##maf version=1 scoring=roast.v3.3
a score=10245.000000
s hg38.chr5_KI270793v1_alt         0 6 +    126136 gaattc
s panPan2.chr5             182987193 6 - 183735486 gaattc
i panPan2.chr5             N 0 C 0
s gorGor5.CYUI01015805v1       77503 6 +    698298 gaattc
i gorGor5.CYUI01015805v1   N 0 C 0
s rheMac8.chr6             179455015 6 - 180051392 gaattt
i rheMac8.chr6             N 0 C 0
s macFas5.chr6             181186130 6 - 181584905 gaattt
i macFas5.chr6             N 0 C 0
s macNem1.NW_012012389v1      180978 6 -   1764207 gaattt
i macNem1.NW_012012389v1   N 0 C 0
s colAng1.NW_012118799v1      128022 6 -    514179 gaattc
i colAng1.NW_012118799v1   N 0 C 0

a score=2950412.000000
s hg38.chr5_KI270793v1_alt         6 781 +    126136  
s panPan2.chr5             182987199 781 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       77509 782 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179455021 765 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181186136 771 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      180984 776 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      195982 776 -  16742782  
i cerAty1.NW_012009470v1   N 0 C 0
s chlSab2.chr4              90504985 779 -  91010382  
i chlSab2.chr4             N 0 C 0
s manLeu1.NW_012110441v1       78522 776 -    438239  
i manLeu1.NW_012110441v1   N 0 C 0
s colAng1.NW_012118799v1      128028 772 -    514179  
i colAng1.NW_012118799v1   C 0 C 0

a score=1828695.000000
s hg38.chr5_KI270793v1_alt       787 420 +    126136 gatgacagccagggtgcaggattccaggtGTCAGGAGTGGCGCACTGTGCCGCCCCCCCCTGCCCCccacccaaaagacatgttgaagtccttaacccagtgcctcggaatgcaacctttcttggaaacagcgactt--acagaggcaatcaaattaccatgaggccattaaggtgggccctgatccacgatcactggtgtccttctaagaaggggaaacctggccccgtagagagacaggcacggaggagagattctgtgaagagacacaggggaagacggcctgtgagagca-gggctggagggaggccctccgagacaaacaacgccagcggctgcgtagatcaccagcagccaggaggggcatggaacagcttctcccgcacggctcacaTGAGCAGAAGGTGCAGGTACCAGAGTGCT
s panPan2.chr5             182987980 416 - 183735486 gatgacagccagggtgcaggattccaggtGTCAGGAGTGGCGCACTGTGCCGCCCCCC--TGCCCCccacccaaaagacatgttgaagtccttaacccactgcctcagaatgcaacctttcttggaaacagcgtctt--acagaggcaatcaaattaccatgaggccattaaggtggggcctgatccacgatcactggtgtccttctaagaaggggaaacctggccccgtagagagacaggcacagaggagagattctgtgaagagacataggggaagacggcctgtgagagca-tggctggagggaggccctc-gagacaaacaacgccagcggctgcgtagaccaccagcagccaggagaggcatg-aacagcttctcccgcacggctcacaTGAGCAGAAGGTGCAGGTACCAGAGTGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       78291 417 +    698298 gatgacagccagggtgcaggattccaggtGTCAGGAGTGGCGCACTGTGCCGCCTCCC--CGCCCCccacccaaaagacatgttgaagtccttaacccagtgcctcggaatgcaacctttcttggaaacagcgtctt--acagaggcaatcaaattaccatgaggccattaaggtggaccctgatccacgatcactggtgtccttctaagaaggggaaacctggccccatggagagacaggcacggaggagagattctgtgaagagacacaggggaagacggcctgtgagagca-gggctggagggaggccctccgagacaaacaacgccagcgggt-cgtagaccaccagcagccaggaggggcatggaacagcttctcccgcacggctcacaTGAGCAGAAGGTGCAGGTACCAGAGTGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120503212 410 - 121039945 GATGACAGCCAGGGCGCAGGATTCCAGGAGTCAGGAGTGGCG--CTGTGC-----CCC--CACCtcccgcccaaaagatatgttgaagtccttaacccagtgcctgggaatgcaacctttcttggaaacagcgtctt--acagaggcaatcaaattaccatgaggccattaaggtgggccctgatccatgatcactggtgtccttctaagaaggggaaacctggccccgc--agagacaggcacagaggagagattctgtgaagagacacaggggaagacggcctgtgagagcaggggctggagggaggccctccgagacaaacaacaccagcggctgcatagaccaccagcagccaggaggggcacggaacagcttctcccgcacggctcacaTGAGCAGAAGGTGCAGGTACTAGAGTGCC
i nomLeu3.chr6             N 0 C 0
s rheMac8.chr6             179455786 408 - 180051392 gatgacagccagcgtgcaggattccaggtGTCAGGACTGGCG--CTGTG---GCCCCC--GACCCTCCGccccaaagacatgttgaagtccttagcccactgcctcggaatgcaacc-ttcttggaaacagggtcttggaaacagccaatcaaattaccatgaggccattaaggtgggccctgatccacgaccactggtgtccttctaagaaggggaa------acctgtagagagacaggcacggagcagagattctgtgaagagacacaggggacgacggcttgtgagagca-aggctggagggaggccctctgagacagacaacgccagcagctgcgtagaccaccagcagccaggaggggcacggaacagcttctcccgcacggctcacaTGAGCAGAAGGTGCAGGTACTAGAGTGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181186907 409 - 181584905 gatgacagccagcgtgcaggattccaggtGTCAGGACTGGCG--CTGTG---GCCCCC--GACCCTCCGccccaaagacatgttgaagtccttagcccactgcctcggaatgcaacctttcttggaaacagggtcttggaaacagccaatcaaattaccatgaggccattaaggtgggccctgatccacgaccactggtgtccttctaagaaggggaa------acctgtagagagacaggcacggagcagagattctgtgaagacacacaggggacgacggcttgtgagagca-aggctggagggaggccctctgagacagacaacgccagcagctgcgtagaccaccagcagccaggaggggcacggaacagcttctcccgcacggctcacaTGAGCAGAAGGTGCAGGTACTAGAGTGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      181760 409 -   1764207 gatgacagccagcgtgcaggattccaggtGTCAGGACTGGCG--CTGTG---GCCCCC--GACCCTCTGccccaaagacatgttgaagtccttagcccactgcctcagaatgcaacctttcttggaaacagggtcttggaaacagccaatcaaattaccatgaggccattaaggtgggccctgatccacgaccactggtgtccttctaagaaggggaa------acctgtagagagacaggcacggagcagagattctgtgaagagacacaggggacgacggcttgtgagagca-aggctggagggaggccctctgagacagacaacgccagcagctgcgtagaccaccagcagccaggaggggcacggaacagcttctcccgcacggctcacaTGAGCAGAAGGTGCAGGTAGTAGAGTGCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      196758 409 -  16742782 gatgacagccagcgtgcaggattccaggtGTCAGGACTGGCG--CTGTGCC-ACCCCC--CACCCTCTGccccaaagacatgttgaagtccttagcccagtgcctcggaatgcaacctttcttggaaacagggtctt--acagagccaatcaaattaccatgaggtcattaaggtgggccctgatccacgatcactggtgtccttctaagaaggggaa------acctgtagagagacaggcacggagcagagattctgtgaagagacacaggggacgacggcttgtgagagca-aggctggagggaggccctccgagacagacaacaccagcagctgcgtagaccaccagcagccaggaggggcacggaacagcttctcccgcacggctcgcaTGAGCATAAGGTGTGGGTACTAGAGTGCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90505764 408 -  91010382 gatgacagtcagcgtgcaggattccaggtGTCAGGACTGGCG--CTGTG---ACCCCC--GACCCTCCGccccaaagacaggttgaagtccttagcccaatgcctcggaatgcaacctttcttggaaacagggtctt--acagagccaatcaaattaccatgaggccattaaggtgggccctgatccacaatcaccggtgtcctcctaagaagggaaa-cctggccctgtagagagacaggcacagagcagagattctgtgaagagacacaggggacgacggcttgtgagagca-aggctggagggaggccctccg----agacaacgccagcagctgcgtagaccaccagcagccaggaggggcacggaacagcttctcccacacggctcacaTGAGCAGAAGGTGCGGGTACTAGAGTGCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       79298 407 -    438239 gatgacagccagcgtgcaggattccaggtGTCAGGACTGGCG--CTGTGCC-ACCCCC--CACCCTCTGccccaaagacatgttgaagtccttagcccagtgcctcggaatgcaacctttcttggaaacagggtctt--acagagccaatcaaattaccatgaggccattaaggtgggccctgatccacgatcactggtgtccttctaagaaggggaa------acctgtagagagacaggcacggagc--agattctgtgaagagacacaggggacgacggcttgtgagagca-aggctggagggaggccctccgagacagacaacaccagcagctgcgtagaccaccagcagccaggaggggcacggaacagcttctcccgcacggctcacaTGAGCAGAAGGTGCGGGTACTAGAGTGCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      128800 410 -    514179 gatgacagccagcgtgcaggattccaggtGTCAGGACTGGCG--CTGTG---CCCCCC--CACCCTCCAccccaaagacatgttgaagaccttagcccagtgcctcggaatgcaacctttcttggaaacagggtctt--acagagccaaccaaattaccatgaggccattaaggtgggccctgatccacgatcactggtgtccttctaagaaggggaaacctggccctgtagagagacaggcacggagcagagattctgtgaagagacactgggaaagacagcttgtgagagca-aggctggagggaggccctccgagacagacaacgccagcagctgcgtag---accagcagcccggagaggcacggaacagcttctcctgcacggctcgcaggagCAGAAGGGGCGGGTACTGGAGTGCC
i colAng1.NW_012118799v1   C 0 C 0

a score=1382398.000000
s hg38.chr5_KI270793v1_alt      1207 283 +    126136 GCTGTCCACGCAGCAAGTAGTCTGGTTTGAAATGGGG---------TGATGGGGGCTGCAGGACAGGTATCTGAGGGAAGAGGCGATCCCAGGGATGCAGAGCCATTTCGGAGACACTGGAAGAGAAGTCAGCAAAAAAc-------ggctcaaatcgggcccctgcctg-cgctgtgcgtgggcatcttacgggcacaccatc-ctggcttccgtgctgccaatggctgcctccgccctgcaaaggcagagctaagaagatgggacagaggtcacgcagcctccagggcccaaaacattc
s panPan2.chr5             182988396 283 - 183735486 GCTGTCCACGCAGCAAGTAGTCTGGTTTGAAATGGGG---------TGATGGGGGCTGCAGGACAGGTATCTGAGGGAAGAGGCGATCCCAAGGATGCAGAGCCATTTCGGAGACACTGGAACAGAAGGCAGCAAAAAAC-------GGCCCAAATCGGGCCCCTGCCTG-CGCTGTGCGTGGGCATCTTACGGGCACACTGTC-CTGGCTTCCGTGCTGCCAATGGCTGCCTCTGCCCTGCAAAGGCAGAGCTAAGAAGATGGGACAGAGGTCACGCAGCCTCCAGGGCCCAAAACATTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       78708 283 +    698298 GCTGTCCACGCAGCAAGCAGTCTGGTTTGAAATGGGG---------TGATGGGGGCTGCAGGACAGGTATCTGAGGGAAGAGGCGATCCCAAGGATGCAGAGCCATTTCGGAGACACTGGAAGAGAAGTCAGCAAAAAAT-------GGCCCAAATCGGGCCCCTGCCTG-CACTGTGCGTGGGCATCTTACGGGCACACCGTC-CTGgcttccgtgctgccaatggctgcctccgccctgcaaaggcagagctaagaagatgggacagagGTCACGCAGCCTCCAGGGCCCAAAACATTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120503622 281 - 121039945 GCTGTCCACGCAGCAAGTAGTCTGGTTTGAAATGGGG---------TGGGGGGGGCTGCAGGGCCGGTATCTGAGGGAAGAGGCGATTCCAAGGACGCAGAGCCATTTCGGAGACACTGGAACAGAAGTCAGCAAAAAAC-------GGCCCAAATGGGGCCCCTGCCTG-CGCTGTGGGCGGGCATCTTACGGGCACACCGTC-CTGGCTTCTGTACTGCCACTGGCTGCCTCTGCCCTGCAAAGGCAGAGCTAAGAGGATGGGAC--AGGTCACGCAGCCTCCAGGGCCCAAAACAATC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179456194 274 - 180051392 GTTGTCCAGGCAGCAACTGGTCTGGTCTGAAATGGGG---------TGGTGCGGGCTGCAGGGCGGGTATCTGAGGGAAGAGGAGATCCTGAGGATGCAGAGCCAT---------ACCGGAACAGAAGTCAGCAAAGAAT-------ggcccaaatcgggcccctgcctg-cgctgtgggcaggcattttacgggcacagcgtc-ctggcttccatactgccaatggctgcctctgccctgcaaaggcagagctaagaagatgggacagaggtcacgcagcctccagggcccaaaacattc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181187316 274 - 181584905 GCTGTCCAGGCAGCAACTGGTCTGGTCTGAAATGGGG---------TGGTGCGGGCTGCAGGGCGGGTATCTGAGGGAAGAGGAGATCCTGAGGATGCAGAGCCAT---------ACCGGAAcagaagtcagcaaagaat-------ggcccaaatcgggcccctgcctg-cgctgtgggcaggcattttacgggcacagcgtc-ctggcttccatactgccaatggctgcctctgccctgcaaaggcagagctaagaagatgggacagaggtcacgcagcctccagggcccaaaacattc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      182169 274 -   1764207 GCTGTCCAGGCAGCAACTGGTCTGGTCTGAAATGGGG---------TGGTGCGGGCTGCAGGGCGGGTATCTGAGGGAAGAGGAGATCCTGAGGATGCGGAGCCAT---------ACCGGAACAGAAGTCAGCAAAGAAT-------ggcccaaatcgggcccctgcctg-cgctgtgggcaggcattttacgggcacagcgtc-ctggcttccgtactgccaatggctgcctctgccctgcaaaggcagagctaagaagatgggacagaggtcacgcagcctccagggcccaaaacattc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      197167 282 -  16742782 GCTGTCCAGACAGCAACTGGTCTGGTCTGAAATGGGG---------TGGTGCGGGCTGCAGGGCGGGTATCTGAGGGAAGAGTAGATCCTGAGGATGCAGAGCCATTTCGGAGACACTGGAACAGAAGTCAGCAAAGAAT-------ggcccaaatcgggcccctgcctg-cgctgtgggcaggcatcttacgggcacagcgtc-ctggcttccatactgccaatggctgcctccgccctgc-aaggcagagctaagaagatgggacagaggtcacgcagcctccagggcccaaaacattc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90506172 283 -  91010382 GCTGTCCAGGCAGCAACTGGTCTGGTCTGAAATGGGG---------TGGTGAGGGCTGCAGGGCGGGTATCTGAGGGAAGAGGAGATCCCGAGGATGCAGAGCCATTTCGGAGACACTGGAACAGAAGTCAGCAAAGAAT-------GGCCCAAAGCGGGCCCCTGCCTG-CGCTGTGGGCAGGCATCTTACGGGCACACCGTC-CTGgcttccacactgccaatggctgcctccaccctgcaaaggcagagctaagcagatgggacagaggtcacgcagcctccagggcccaaaacattc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       79705 283 -    438239 GCTGTCCAGGCAGCAACTGGTCTGGTCTGAAATGGGG---------TGGTGCGGGCTGCAGGGCGGGTATCTGAGGGAAGAGGAGATCCCGAGGATGCAGAGCCATTTCGGAGACACCGGAACAGAAGTCAGCAAAGAAT-------GGCCCAAATCGGGCCCCTGCCTG-CGCTGTGGGCAGGCATCTTACGGGCACAGCGTC-CTGgcttccatactgccaatggctgcctccgccctgcaaaggcagagctaagaagatgggacagaggtcacgcagcctctagggcccaaaacattc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      129210 283 -    514179 GCTGTCCAGGCAGCAACTGGTCTGGTTTGAAATGGGG---------TGGTGCGGGCTGCAGGGTGGGTATCTGAGGGAAGAGGAGATCCCGAGGATGCAGAGCCATTTTGGAGACACTGGAACAGAAGTCAGCAAAGAAT-------GGCCCAAATCGGGCCCCTGCCTG-CGCTGTGGGCAGGCATCTTacgggcacaccatc-ctggcttccatactgccaatggccgcctccgccctgcagaggcagagctaagaagatgggacagaggtcacgcagcctccagggcccaaaacattc
i colAng1.NW_012118799v1   C 0 C 0
s canFam3.chr34             11673728 294 +  42124431 GCTGTCTACACAGTAATTAACCTAGTTTGGAATGGGGACATAAGGAGAGTGGGGGCTAAAG----GGGATCTGA-GGAACAGGAGACCCCAAGGATTTAAAATTGATCCTGAGACATTGGAAcagaaactggcaatgtatagccacaggtccaatcctgcccactacctatttctgtaataaag--tttaattggaacacagtcatttgttcaagtattacctatggctgctttcatgctacaaaggtagaattcaaatgttgagaacgagatcatgtggtccacaaaaccaaaatcattc
i canFam3.chr34            N 0 C 0

a score=25656.000000
s hg38.chr5_KI270793v1_alt      1490 4 +    126136 acac
s panPan2.chr5             182988679 4 - 183735486 ACAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       78991 4 +    698298 ACAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120503903 4 - 121039945 ACAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179456468 4 - 180051392 acac
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181187590 4 - 181584905 acAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      182443 4 -   1764207 acac
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      197449 4 -  16742782 acac
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90506455 4 -  91010382 acAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       79988 4 -    438239 acac
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      129493 4 -    514179 acAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203777539 4 + 204313951 acat
i calJac3.chr2             N 0 I 2
s canFam3.chr34             11674022 4 +  42124431 actc
i canFam3.chr34            C 0 I 15

a score=1462010.000000
s hg38.chr5_KI270793v1_alt      1494 249 +    126136 aaaaaagctgactgatccctgCACT--AGGAGTTTAA-AATGAGTGGAGGCATCTCACACAAG-AAAAAAAATGATTTGATTAAAAGCCTCAGACAAGACAAATGGTACTCAAGAA--AGTGTACAATCCGACCACTTTCCACGGCTATGCAGACAGAGTCCACTGATTTCTGCCCCTTGAATCAACCCATAAACAAAGCACGAAGTCTCTCTAGGGTTTTGGGATACACGCAGATACTATCAACC----GAACATAGA------------
s panPan2.chr5             182988683 249 - 183735486 AAAAAAGCTGACTGATCCCTGCACT--AGGAGTTTAA-AATGAGTGGAGGCATCTCACACAAG-AAAAAAAATGATTTGATTAAAAGCCTCAGACAAGACAAATGGTACTCAAGAA--AGTGTACAATCCGACCACTTCCCACGGCTATGCAGACAGAGTCCACTGATTTCTGCCCCTTGAATCAACCCATAAACAAAGCACGAAGTCTCTCTAGGGTTTTGGGATACACGCAGATACTATCAACC----GAACATAGA------------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       78995 240 +    698298 AAAAAAGCTGACTGATCCCTGCACT--AGGAGTTTAA-AATGAGTGGAGGCATCTCACACAAG--AAAAAAATGATTTGATTAAAAGCCTCAGACAAGACAAACGGTACTCAAAA----------AATCCGACCACTTCCCACGGCTATGCAGACAGAGTCCACTGATTTCTGCCCCTTGAATCAACCCATAAACAAAGCACGAAGTCTCTCTAGGGTTTTGGGATACACGCAGATACTATCAACC----GAACATAGA------------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120503907 248 - 121039945 AAAAAAGCTGACTGACCCGTGCACT--AGGAGTTTAA-GATGAGTAGAGGCACCTCACACAAG--AAAAAAAAGATTTGATTAAAAGCCTCAGACAAGACAAACGGTACTCAAGAA--AGTGTACAATCCGACCACTTCCCACGGCTATGCAGACAGAGTCCACTGATTTCTGCCCCTTGAATCAACCCATAAACAAAGCACGAAGTCTCTCTAGGGTTTTGGGATACACGCAGATACTATCAACC----GAACATAGA------------
i nomLeu3.chr6             C 0 M 100
s rheMac8.chr6             179456472 245 - 180051392 aaaaaggctgactgacccctgCACT--AGGAGTTTAA-AATGAGTGAAAGCATCTCACACAAG-AAAAAAAATGATTTGATTAAAAGCTTCAGACAAGACAAACAGCGCTCAAGAA--AGTGTATAATCCAACCACTTCCCATGGCGACGCAGACAGAGTCCCCTGATTTCTGCCCCTTGAATCAACCCATAAACAAA----AAAGTCTCTCTAGGGTTTTGGGATACACGTAGATACTATCAACC----CAACACAGA------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181187594 245 - 181584905 AAAAAGGCTGACTGACCCCTGCACT--AGGAGTTTAA-AATGAGTGAAAGCATCTCACACAAG-AAAAAAAATGATTTGATTAAAAGCTTCAGACAAGACAAACAGCGCTCAAGAA--AGTGTATAATCCAACCACTTCCCACGGCGACGCAGACAGAGTCCCCTGATTTCTGCCCCTTGAATCAACCCATAAACAAA----AAAGTCTCTCTAGGGTTTTGGGATACACGTAGATACTATCAACC----CAACACAGA------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      182447 245 -   1764207 aaaaaggctgactgacccctgCACT--AGGAGTTTAA-AATGAGTGAAAGCATCTCACACAAG-AAAAAAAATGATTTGATTAAAAGCTTCAGACAAGACAAACAGCGCTCAAGAA--AGTGTATAATCCAACCACTTCCCACGGCGACGCAGACAGAGTCCCCTGATTTCTGCCCCTTGAATCAACCCATAAACAAA----AAAGTCTCTCTAGGGTTTTGGGATACACGTAGATACTATCAACC----CAACACAGA------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      197453 241 -  16742782 aaaaaggttgactgacccctgAACT--AGGAGTTTAA-AATGAATGAAAGCATCTCACACAAG-AAAAAAAATGATTTGATTAAAAGCTTCAGACAAGACAAACAGTGCTCAAGAA--AGTGTATAATCCAACCAGTTCCCACAGCGACG----CAGAGTCCCCTGATTTCTGCCCCTTGAATCAACCCATAAACAAA----AAAGTCTCTCTAGGGTTTTGGGATACACGTAGATACTATCAACC----CAACACAGA------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90506459 250 -  91010382 AAAAAGGCTGACTGACCCCTGCACT--AGGAGTTTAA-AATGAGCGAAAGCATCTCACACAAGAAAAAAAAATGATTTGATTAAAAGCTTCAGACAAGACAAACAGCGCTCAAGAA--AGTGTATAATCCAACCAGTTCCCACGGCGATGCAGACAGAGTCCCCTGATTTCTGCCCCTTGAATCAACCCATAAACAGAGCACGAAGTCTCTCTAGAGTTTTGGGATACACGTAGATACTATCAACC----CAACACAGA------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       79992 249 -    438239 aaaaaggctgactgacccctgCACT--AGGAGTTTAA-AATGAGTGAAAGCATCTCACACAAG-AAAAAAAATGATTTGATTAAAAGCTTCAGACAAGACAAATAGCGCTCAAGAA--AGTGTATAATCCAACCAGTTCCCACAGCGACGCAGACAGAGTCCCCTGATTTCTGCCCCTTGAATCAACCCATAAACAAAGCGTGAAGTCTCTCTAGGGTTTTGGGATACATGTAGATACTATCAACC----CAACACAGA------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      129497 246 -    514179 CAAAAGGCTGCCTGACCCCTGCACT--AGGAGTTTAA-AATGAGTGAAAGCATCTCACACAAG--AAAAACGTGATTTGATTACAAGCTTCAGACAAGACAAACAGCACTCAAGAG--AGTGTATAATCCAACCAGTTCCCACAGCGACGCAGACAGAGTCCCCTGATTTCTGCCCCTTGAATCAACCCATACACAAAGCACGAAG--TCTCTAGGGTTTTGGGATACACGTAGATACTATCAACC----CAACACAGA------------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203777545 240 + 204313951 aaaGACACTGAC----ACCTGCACTAGAGGAATTTAA-AATGAGCTAAGGCATCTTACACAAG-AAAAACAA-----TGATTAAAAGCTTCAGACA----AAGCAGTGCTCAAGAACGAGCGCATAATCCAACCACTTCCCGCGGCAGTGTAGACAGAGCTCACGAATTTCCGCCCCTTGAATCAACCCATAAACAAAGCATGAAGTCTCTCTAGGGTTTGGGGGTACAGGGAGATGCTATCAACG----CAACACAGA------------
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          15932488 239 +  16417988 aaaaaaGCTGAC----ACCTGCACTAGAGGAATTTAA-AATGAGCTAAGGCATCTTGCAC-AG-AAAAAAAA-----TGATTAGAAGCTTCAGATA----AAACACTGCTCAAGAAACAGCATATAATCCAACGACTTCCCACAGCAATGCAGACAGAGCTCACTAACTTCTGTCCCTTGAATCAACCCATAAACAAAACTCAAAGTCTCTCTAGGGTTTTCGGATACAGGGAGATACCATCAACG----CAACACAGA------------
i saiBol1.JH378155         N 0 C 0
s canFam3.chr34             11674041 241 +  42124431 aaaagaattggtcaaccACACCATCAGAGGAATTTAAGGATGAGCTAAAGCACTTAATGCAAG-AAGAAAA------CCATTAAAAGCTCCAGACAAACAAAATGGTGTATAAG----CGCATATAATCGTAGCACATTACA-AGCAATATAAATA--------------CTGCCTTAAAAATCAACCTGCAAAC----CACAAAGACACTTTATGATTTCAGAACACATTTAAATACTATTAACCTTCACAGTGTACAGTTAAACCTAAC
i canFam3.chr34            I 15 C 0

a score=239533.000000
s hg38.chr5_KI270793v1_alt      1743 39 +    126136 CATGCAGGCAGCAGG-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
s panPan2.chr5             182988932 39 - 183735486 CATGCAGGCAGCAGG-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79235 39 +    698298 CATGCAGGCAGCAGG-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179456717 39 - 180051392 AATGCAGGCAGCAGA-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181187839 39 - 181584905 AATGCAGGCAGCAGA-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      182692 39 -   1764207 AATGCAGGCAGCAGA-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      197694 39 -  16742782 AATGCAGGCAGCAGG-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90506709 39 -  91010382 AATGCAGACAGCAGG-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80241 39 -    438239 AATGCAGGCAGCAGG-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      129743 39 -    514179 AATGCAGGCAGCAGG-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203777785 39 + 204313951 CATGCAGGCAGCAGG-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i calJac3.chr2             C 0 I 616
s saiBol1.JH378155          15932727 39 +  16417988 AATGCAGGCAGCAGG-GCTG-----------GGGCTGCAAGGGGAAGCAGG---
i saiBol1.JH378155         C 0 I 37
s canFam3.chr34             11674282 54 +  42124431 AATGGAGCTGACAGGAGCTGGGAGGGGGCACGGGCTGCATAGGCAGACAAAAGA
i canFam3.chr34            C 0 C 0
e nomLeu3.chr6             120504155 100 - 121039945 M

a score=177445.000000
s hg38.chr5_KI270793v1_alt      1782 36 +    126136 CCCGGCTCACACA-CACGCCCACGGTCTCCGAAGGTG
s panPan2.chr5             182988971 36 - 183735486 CCCGGCTCACACA-CACGCCCACGGTCTCCGAAGGCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79274 36 +    698298 CCCGGCTCACACA-CACGCCCACGGTCTCCGAAGGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179456756 36 - 180051392 CCCGGCTCACACA-CACGCCCATGGTCCCCGGAGGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181187878 36 - 181584905 CCCGGCTCACACA-CACGCCCACGGTCCCCGGAGGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      182731 36 -   1764207 CCCGGCTCACGCA-CACGCCCATGGTCCCCGGAGGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      197733 36 -  16742782 CCCGGCTCACACA-CACGCCCATGGTCCCTGGAGGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90506748 35 -  91010382 CCTGGCTCACACA-CATGCCCATGGTCCCCGGA-GTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80280 36 -    438239 CCTGGCTCACACA-CACGCCCATGGTCCCCGGAGGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      129782 36 -    514179 CCCGGCTCACACA-CACGCCCATGGTCCCCGGAGGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203778440 36 + 204313951 CCCAGCTCACATG-CACACCCATGGTCCACCAAGGCA
i calJac3.chr2             I 616 C 0
s saiBol1.JH378155          15932803 36 +  16417988 CCCGGCTCACACG-CATGCCCATGGTCCACCAAGGCA
i saiBol1.JH378155         I 37 C 0
s canFam3.chr34             11674336 34 +  42124431 TCCCACTCCCACAGCTCAACTACATCTGGCAGAG---
i canFam3.chr34            C 0 C 0
e nomLeu3.chr6             120504155 100 - 121039945 M

a score=137932.000000
s hg38.chr5_KI270793v1_alt      1818 19 +    126136 GCCTCACCAGCACCAGCCA
s panPan2.chr5             182989007 19 - 183735486 GCCTCACCAGCACCAGCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79310 19 +    698298 GCCTCACCAGCACCAGCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179456792 19 - 180051392 GCCTCACCAGCACCAGCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181187914 19 - 181584905 GCCTCACCAGCACCAGCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      182767 19 -   1764207 GCCTCACCAGCACCAGCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      197769 19 -  16742782 GCCTCACCAGCACCAGCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90506783 19 -  91010382 GCCTCACCATCACCAGCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80316 19 -    438239 GCCTCACCAGCACCAGCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      129818 19 -    514179 GCCTCACCAGCACCAGCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203778476 19 + 204313951 GCCTCACCAGCACCAGCCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15932839 19 +  16417988 GCCTCGCCGGCACCAGCTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       15287 19 +    298490 GCCTCACCAGCACCAGCCA
i cebCap1.NW_016108158v1   N 0 C 0
s canFam3.chr34             11674370 19 +  42124431 CCAGCACGGCCACAAGACA
i canFam3.chr34            C 0 I 1
e nomLeu3.chr6             120504155 100 - 121039945 M

a score=187646.000000
s hg38.chr5_KI270793v1_alt      1837 31 +    126136 TGGGGAGGGAG-ACAGGAAGG--CGCATCCCGGC-
s panPan2.chr5             182989026 31 - 183735486 TGGGGAGGGAG-ACAGGAGGG--CGCATCCCGGC-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79329 31 +    698298 TGGGGAGGGAG-ACAGGAGGG--CACATACCGGC-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179456811 31 - 180051392 TGGGGAGGGAG-ACAGGAGGG--CGCATCCCAGC-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181187933 31 - 181584905 TGGGGAGGGAG-ACAGGAGGG--CGCATCCCAGC-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      182786 31 -   1764207 TGGGGAGGGAG-ACAGGAGGG--CGCATTCCAGC-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      197788 31 -  16742782 TGGGGAGGGAG-ACAGGAGGG--CGCATCCCAGC-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90506802 31 -  91010382 TGGGGAGGGAG-ACAGGAGGG--CGCATCCCAGC-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80335 31 -    438239 TGGGGAGGGAG-ACAGGAGGG--TGCATCCCAGC-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      129837 31 -    514179 TGGGGAGGGAG-ACAGAAGGG--CGCATCCCAGC-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203778495 29 + 204313951 T-GGGAGGGAC-GCA-GAGGA--CGCATCCCAGC-
i calJac3.chr2             C 0 I 1570
s saiBol1.JH378155          15932858 31 +  16417988 TGGGGAGGAAG-GCAGGAGGA--TGCAACCCAGC-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       15306 28 +    298490 TGGGGAGGGAA-GCA---GGA--CACATCCCAGA-
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1833661 31 -   2165740 TGCAGGGGGAG-GCAGGAAGG--GACATCTCCAA-
i otoGar3.GL873745         N 0 C 0
s canFam3.chr34             11674390 35 +  42124431 TGAGCAGAGAACACAAAAAGGATCATATTCCATGG
i canFam3.chr34            I 1 C 0
e nomLeu3.chr6             120504155 100 - 121039945 M

a score=507053.000000
s hg38.chr5_KI270793v1_alt      1868 105 +    126136 ACCGTCACA------GAAAGGGTGGGGGAGGAAG---------------AAGTCCTCCTCGATCCAGGAAGACGGGTC-----CTGCTGAATGTGCTCACGGCCAGAAGTGG-GATTTGGC---------------------------------------------------------TGGATGGGCAG--
s panPan2.chr5             182989057 162 - 183735486 ACCGTCACA------GAAAGGGTGGGGGAGGAAG---------------AAGTTCTCCTCGATCCAGGCAGATGGGTC-----CTGCTGAATGTGCTCACGGCCGGAAGCGG-GATTTGGCCGGATGGGCAGCTACGGGTCCTGCTGAATGTGCTCACGGCCGGAAGCAGGATTTGGCTGGATGGGCAG--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79360 105 +    698298 ACCGTCACA------GAAAGGGCGGGGGAGGAAG---------------AAGTCCTCCTCGATCCAGGCAGACGGGTC-----CTGCTGAATGTGCTCACGGCCAGAAGTGG-GATTTGGC---------------------------------------------------------TGGATGGGCAG--
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179456842 105 - 180051392 ACCGTCACA------CAAAAGGTGGAGGAGGAAG---------------GAGTCCTCCTCTATCCAGGCAGGTGGGTC-----CTGCTGAATGTGCTCATGGCCAGAAATGG-GATTTGGT---------------------------------------------------------TGGATGGACGG--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181187964 105 - 181584905 ACCGTCACA------GAAAAGGTGGAGGAGGAAG---------------GAGTCCTCCTCTATCCAGGCAGGTGGGTC-----CTGCTGAATGTGCTCATGGCCAGAAATGG-GATTTGGT---------------------------------------------------------TGGATGGACGG--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      182817 105 -   1764207 ACCGTCACA------GAAAAGGTGGAGGAGGAAG---------------GAGTCCTCCTCTATCCAGGCAGGTGGGTC-----CTGCTGAATGTGCTCATGGCCAGAAATGG-GATTTGGT---------------------------------------------------------TGGATGGACGG--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      197819 105 -  16742782 ACCGTCACA------GAAAAGGTGGAGGAGGAAG---------------GAGTCCTCCTCTATCCAGGCAGGTGGGTC-----CTGCTGAACGTGCTCATGGCCAGAAATGG-GATTTGGT---------------------------------------------------------TGGTTGGACAG--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90506833 105 -  91010382 ACCGTCACA------GAAGAGGTGGAGGAGGAAG---------------GAGTCCTCCTCTATCCAGGCAGGTGGGTC-----CTGCTGAATGTGCTCATGGCCAGAAATGG-GATTTGGT---------------------------------------------------------TGGATGGACAG--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80366 105 -    438239 ACCGTCACA------GAAAAGGTGGAGGAGGAAG---------------GAGTCCTCCTCTATCCAGGCAGGTGGGTC-----CTGCTGAATGTGCTCATGGCCAGAAATGG-GATTTGGT---------------------------------------------------------TGGATGGACAG--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      129868 105 -    514179 ACCATCACA------GAAAAGGTGGAGGAGGAAG---------------GAGTCCTCCTCTATCCAGGCAGGTGGGTC-----CTGCAGAATGTGCTCATGGCCAGAAATGG-GATTTGGT---------------------------------------------------------TGGATGGACAG--
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15932889 103 +  16417988 GCTGTC-CT------GGCAAGGCCGGGGAAGAAG----------------AGTCCTCCTCTCTCCAGGCAGGTGGGTC-----CAGGTGAAGGCGCTCCCCGCCAGGAAAGG-GATTTGGT---------------------------------------------------------TGGATGGGCAG--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       15334 104 +    298490 ACTGTC-CT------GGAAAGGCCGGGGAGGAAG---------------AAGTCCTCCTCTCTCCAGGCAGGTGGGTC-----CAGGTGAAGGTGCTCACCGCCAGAAATGG-GATTTGGT---------------------------------------------------------TGGATGGGCAG--
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1833692 104 -   2165740 ATGGTCTCAGGCCTTGGGAGGGTAGGGGAGGAGGTGCCTATGGAGGCCTAAGTGCCCCACAACC------GGCAGCTC-----CC----------CCCACTTCCCAAA--GG-GATCTGGC---------------------------------------------------------TATAAGG------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11674425 100 +  42124431 ACTGT-ACC------GCTGGGGTCAGAGAGGAAG---------------GG-----CCTGT-----GGCAG--GGGTCAGTGACTGCTTAAGGTGCTCACACCCATAAAAGGTGATGTGTT---------------------------------------------------------TGCATGTTTGGAG
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203778524 1570 + 204313951 I
e nomLeu3.chr6             120504155 100 - 121039945 M

a score=582442.000000
s hg38.chr5_KI270793v1_alt      1973 109 +    126136 CTAAGAAAGTAGCTGA-AGCGA--GAGCT-GGAAGCAGAGGCAG-CCACAGAC-GTGAGAGCTG-CCAGCCCCGGGA-------------------AAGGGAC-----------AGGACAAGCCCTTTGC-TGAGTTGATTTTACAC
s panPan2.chr5             182989219 109 - 183735486 CTAAGAAAGTAGCTGA-AGCGA--GAGCT-GGAAGCAGAGGCAG-CCACAGAC-GTGAGAGCTG-CCAGCCCCGGGA-------------------AAGGGAC-----------AGGACAAGCCCTTTGC-TGAGTTGATTTTACAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79465 109 +    698298 CTAAGAAAGTAGCTGA-AGCAA--GAGCT-GGAAGCAGAGGCAG-CCACAGAC-GTGAGAGCTG-CCAGCCCCGGGA-------------------AAGGGAC-----------AGGACAAGCCCTTTGC-TGAGTTGATTTTACAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504256 114 - 121039945 CTAAGAAAGTAACTGA-AGCGA--GAGCTAAGAAGCAGAGGCAACCCACAGACGGTGAGAGCTG-CCAGCCCCGGGAA-----------------GAGGGGAC-----------ATGACAAGCCCTTTGC-TGAGTTGATTTTACAC
i nomLeu3.chr6             M 100 C 0
s rheMac8.chr6             179456947 109 - 180051392 CTAAGAAAGTAACTGA-AGCAA--TAGCT-ACAAGCAGAGGCGA-TCACAGAT-GTGAGAACTG--CAGTCCTGGGAA------------------GAGGGAC-----------ATGACAAGCCCTTTCC-TGGGTTGATTTCACAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188069 109 - 181584905 CTAAGAAAGTAACTGA-AGCAA--TAGCT-ACAAGCAGAGGCGA-TCACAGAT-GTGAGAACTG--CAGTCCTGGGAA------------------GAGGGAC-----------ATGACAAGCCCTTTCC-TGGGTTGATTTCACAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      182922 109 -   1764207 CTAAGGAAGTAACTGA-AGCAA--TAGCT-ACAAGCAGAGGCGA-TCACAGAT-GTGAGAACTG--CAGTCCTGGGAA------------------GAGGGAC-----------ATGACAAGCCCTTTCC-TGGGTTGATTTCACAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      197924 107 -  16742782 CTAAGAAAGTAACTGT-A-CAA--GAGCT-ACAAGCAGAGGCGA-TCACAGAC-GTGAGAACTG--CAGCCCTGGGAA------------------GAAGGAC-----------ATGACAAGCCCTTTCC-TGGGTT-ATTTCACAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90506938 108 -  91010382 CTAAGAAAGTAACTGA-AGCAA--GAGCT-ACAAGCAGAGGCAA-TCACAGAC--TGAGAACTG--CAGCCCTGGGAA------------------AAGGGTC-----------ATGACAAGCCCTTTCC-TGGGTTGATTTTACAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80471 108 -    438239 CTAAGAAAGCAACTGT-A-CAA--GAGCT-ACAAGCAGAGGCGA-CCACAGAC-GTGAGAACTG--CAGCCCTGGGAA------------------AAGGGAC-----------ATGACAAGCCCTTTCC-TCGGTTGATTTCACAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      129973 109 -    514179 CGAAGAAAGTAACTGA-AGCAA--GAGCT-ACAAGCAGAGGCGA-TCACAGAC-GTGAGAACTG--CAGCCCTGGGAA------------------GAGGGAC-----------GTGACAAGCCCTTTCC-TGGGCTGATTTTACAC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15932992 107 +  16417988 CTGAGAAAGGAACTGA-AACAA--AAGCC-AGAAGCAGAGGCGA-CCACAGAC--TGAGAGCTG-CCAGCCCTGGGAA------------------GATGGAC-----------ATGACAAACCCTTTGC-TGGGTTGCTTTTAC--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       15438 110 +    298490 CTGAGAAAGTAACTGA-AACAA--AAGCT-AGAATTAGAGGCGA-CCACAGAC-GTGAGAGCTG-CCAGCCCTGGGAA------------------GAAGGAC-----------ATGACAAACCCTTTGC-CGGATTGCTTTTACAC
i cebCap1.NW_016108158v1   C 0 I 47
s otoGar3.GL873745           1833796 120 -   2165740 -TGGGAAAGCAGCTCACAGCAACCTAGGC-AGCATCACAGACGT-CAGCAG-C-ATGAAGAGGG--TGGCCCGAAGAG------------------GGCGGCC-GCTGCTTCTTGTCATGATCTCTTCAT-CTCCTCTAGCTTACAC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11674525 141 +  42124431 ATGAGCGAGTAACTCA-AACAA--AACCT-GCAagcagaaacaa-ctgcagaa-gcaaccaatgattgtctctgaggatggggctgaggcagcggtaaggggctgtcatttctcatcacacgcctctcacactatttgattttacat
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203778524 1570 + 204313951 I

a score=318366.000000
s hg38.chr5_KI270793v1_alt      2082 57 +    126136 ATATTACCTTAATCAACAGTTTC-GATATTAAAAATAACTCCTAGGAA-TGTGGAGAAC
s panPan2.chr5             182989328 57 - 183735486 ATATTACCTTAATCTACAGTTTC-GATATTAAAAATTACTCCTAGGAA-TGTGGAGAAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79574 57 +    698298 ATATTACCTTAATTAACAGTTTC-AATAGTAAAAATAACTCCTAGGAA-TGTGGAGAAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504370 58 - 121039945 ATATTACCTTAATCAACAGTTTCAAATATTAGAAATAACTCCTAGGAA-TGTGGAGAAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457056 57 - 180051392 ATATTACCTTAATCAACAGTTTC-AATATTAGAAATAACTCCTAGCAA-TGCGGAGAAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188178 57 - 181584905 ATATTACCTTAATCAACAGTTTC-AATATTAGAAATAACTCCTAGCAA-TGCGGAGAAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183031 57 -   1764207 ATATTACCTTAATCAACAGTTTC-AATATTAGAAATAACTCCTAGCAA-TGCGGAGAAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      198031 57 -  16742782 ATATTACCTTAATCAACAGTTTC-AATATTAGAAATAACTTCTAGCAA-CGTGGAGAAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90507046 57 -  91010382 ATATTACCTTAATCAACAGTTTA-AATATTAGAAATAACTTCCAGGAA-CGCAGAGAAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80579 57 -    438239 ATATTACCTTAATCAACAGTTTC-AATATTAGAAATAACTCCTAGCAA-TGCGGAGAAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130082 56 -    514179 ATATTACCTTAATC-ACAGTTTC-AATATTAGAAATAACTTCCAGGAA-GGCGGAGAAC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15933099 54 +  16417988 ATGTTACCTTA----ACACTTTC-AGTATTAGAAGTGACCTCTAGGAAGTATCAAGAAC
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1833916 58 -   2165740 GTGTTACTTTAATAAACACTTCA-AATAGTAAAAATGGCTTTTAGAGGGTGTGGAAAAT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11674666 48 +  42124431 gtattactttaataaaC-TTTTC-AATATTAAAAA--------AGAAC-TATGGAAAAC
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1       15548 47 +    298490 I
e calJac3.chr2             203778524 1570 + 204313951 I

a score=213761.000000
s hg38.chr5_KI270793v1_alt      2139 35 +    126136 ------------AGGAGAGAGGCCCCGTCCCACTGTCCACGGAGTCC
s panPan2.chr5             182989385 35 - 183735486 ------------AGGAGAGAGGCCCCGTCCCACTGTCCGCGGAGTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79631 35 +    698298 ------------AGGAGAGAGGCCCCGTCCCACTGTCCACTGAGTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504428 35 - 121039945 ------------AGGAGAGCAGCCCCGTCCCACCGTCCACTGAGTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457113 34 - 180051392 ------------GGGAGAGAGGCCCCGTCCCACC-TCCACTGAGTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188235 34 - 181584905 ------------GGGAGAGAGGCCCCGTCCCACC-TCCACTGAGTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183088 34 -   1764207 ------------GGGAGAGAGGCCCCGTCCCACC-TCCACTGAGTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      198088 34 -  16742782 ------------GGGAGAGAGGCCCCGTCCCACC-TCCACTGAGTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90507103 35 -  91010382 ------------AGGAGAGAGCCCCCGTCCCACCGTCCACTGAGTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80636 34 -    438239 ------------GGGAGAGAGGCCCCGTCCCACC-TCCACTGAGTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130138 35 -    514179 ------------GGGAGAGAGGCCCCATCCCACCATCCACTGAGTCC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15933153 35 +  16417988 ------------AGGAGAGAGGTCCTGTCCCACCGTCCACGGAGTCC
i saiBol1.JH378155         C 0 I 4
s cebCap1.NW_016108158v1       15595 35 +    298490 ------------AGGAGAGAGGTCCCATCCCACCATCCACGGAGTCC
i cebCap1.NW_016108158v1   I 47 I 980
s otoGar3.GL873745           1833974 19 -   2165740 -------------GGAGAGAAG---------------AGCTGAGATC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11674714 47 +  42124431 ACGGACAAGAGAGGGCGAGAGACACTGTCCCACCATCTCCTTGAGCC
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203778524 1570 + 204313951 I

a score=194247.000000
s hg38.chr5_KI270793v1_alt      2174 40 +    126136 ---CCGCCAGGCAGGCTCTGCCCTTCCTCCCTCCTGGTGTCCG
s panPan2.chr5             182989420 40 - 183735486 ---CCGCCAGCCAGGCTCTGCCCTTCCTCCCTCCTGGTGGCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79666 39 +    698298 ---CCG-CAGCCAGGCTCTGCCCTTCCTCCCTCCTGGTGTCCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504463 39 - 121039945 ---CCGCTAGCCGGGCTCTG-CCTTCCTCCCTCCTGGTGTCCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457147 39 - 180051392 ---CCGCCAGCCGGGCTCTG-CTTTCCTCCCTCCTGGCGTCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188269 39 - 181584905 ---CCGCCAGCCGGGCTCTG-CTTTCCTCCCTCCTGGCGTCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183122 39 -   1764207 ---CCGCCAGCCGGGCTCTG-CTTTCCTCCCTCCTGGCGTCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      198122 39 -  16742782 ---CTGCCAGCTGGGCTCTG-CTTTCCTCCCTCCTGGCGTCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90507138 39 -  91010382 ---CCGCCGGCCGGGCTCTG-CTTTCCTCCCTCCTGGCGTCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80670 39 -    438239 ---CCGCCAGCCGGGCTCTG-CTTTCCTCCCTCCTGGCGTCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130173 39 -    514179 ---CCGCCGGCCGGGCTCTG-CTTTCCTCCCTCCTGGCGTCCA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15933192 39 +  16417988 ---ACACGGGCCAGGCTCTC-CTTTCCTCCCTCCTGGCACCTG
i saiBol1.JH378155         I 4 C 0
s otoGar3.GL873745           1833993 29 -   2165740 ----------CAGTGTTCTA-CCTTCCTC---TCTGACATCTG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11674761 42 +  42124431 CCACTGGCATCTGAGTGTTC-CCTTTCCTCTTTTGGACAGCTC
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1       15630 980 +    298490 I
e calJac3.chr2             203778524 1570 + 204313951 I

a score=135653.000000
s hg38.chr5_KI270793v1_alt      2214 24 +    126136 CCCCTGGAG-AGTGACCG-GCACACA
s panPan2.chr5             182989460 24 - 183735486 CCTCTGGAG-AGTGACCA-GCACACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79705 24 +    698298 CCCCTGGAG-AGTGACCG-GCACACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504502 24 - 121039945 CCCCTGGAG-AGTGACTG-GCACACA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457186 21 - 180051392 CCCCTGGAG----AACTG-GCACACA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188308 21 - 181584905 CCCCTGGAG----AACTG-GCACACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183161 21 -   1764207 CCCCTGGAG----GACTG-GCACACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      198161 21 -  16742782 CCCCTGGAG----GACTG-GCACACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90507177 21 -  91010382 CCCCTGGAG----GACTG-GCACACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80709 21 -    438239 CCCCTGGAG----GACTG-GCACACA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130212 21 -    514179 CCCCTGGAG----GACTG-GCACACA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780094 24 + 204313951 CCTCTGGAC-AGCGACTG-GCACCCA
i calJac3.chr2             I 1570 I 2
s saiBol1.JH378155          15933231 24 +  16417988 CCCTTGGAG-AGCAACTG-GCACCCA
i saiBol1.JH378155         C 0 I 2461
s otoGar3.GL873745           1834022 25 -   2165740 CCCTCTGAG-CATAGCAGTGCACACA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11674803 25 +  42124431 CCCTTGAAGTGGCAATCA-GCACACA
i canFam3.chr34            C 0 I 3
e cebCap1.NW_016108158v1       15630 980 +    298490 I

a score=80268.000000
s hg38.chr5_KI270793v1_alt      2238 17 +    126136 GTGAATGACGTTCGGTT
s panPan2.chr5             182989484 17 - 183735486 GTGAATGACGTTCGGTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79729 17 +    698298 GTGAATGACGTTCGGTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504526 17 - 121039945 GTGAATGACGTTCAGTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457207 17 - 180051392 GCGAACGACGTTCAGTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188329 17 - 181584905 GCGAACGACGTTCAGTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183182 17 -   1764207 GTGAACGACGTTCAGTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      198182 17 -  16742782 GCGAACGACGTTCAGTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90507198 17 -  91010382 GCGAACGACGCTCAGTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80730 17 -    438239 GCGAACGACGTTCAGTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130233 17 -    514179 GCGAACGACGTTCAGTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780120 17 + 204313951 GCACATGACTCACAGTC
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          15935716 17 +  16417988 GTACGTGACTCACAGTC
i saiBol1.JH378155         I 2461 C 0
s otoGar3.GL873745           1834047  9 -   2165740 ------GCAGCTTGG--
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11674831 17 +  42124431 GTCTATATCTTTTAGGT
i canFam3.chr34            I 3 C 0
e cebCap1.NW_016108158v1       15630 980 +    298490 I

a score=2126417.000000
s hg38.chr5_KI270793v1_alt      2255 262 +    126136 AATCCTCCTGACAGCAGGCCAGTCAGAAACA---CTCTGGGTGTCCGT---AGCACTTCCGTTCATACCTGCCCTCTTTCAAAGAAGCTGGGACGCTCTCTTTGGAGTCGAGTGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTTGCTCTCACGGGGCGATCGTCTA-GAAGAAAAGGCCACACAAGACTGT---------------GCAGGTGGCAAGC----------------------------------------------------------------GGCGGGCGGCTGCATC-------CACCCTGGGGCAT-CTACACGGGGCAGGG-----------------------TGTCCAT
s panPan2.chr5             182989501 262 - 183735486 AATCCTCCTGACAGCAGGCCAGTGAGATACA---CTCTGGGCGTCCGT---AGCACTTCCGTTCATACCTGCCCTCTTTCAAAGAAGCTGGGACGCTCTCTTTGGAGTCGAGTGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTCTCTCTCACGGGGCGATCGTCTA-GAAGAAAAGGCCACACAAGACTGC---------------GCAGGTGGCAAGC----------------------------------------------------------------GGTGGGCGGCTGCATC-------CACCCTGGGGCAT-CTACACGGGGCAGGG-----------------------TGTCCAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       79746 262 +    698298 AATCCTCCTGACAGCAGGCCAGTCAGAAACA---CTCTGGGCGTCCGT---AGCACTTCCGTTCATACCTGCCCTCTTTCAAAGAAGCTGGGACGCTCTCTTTGGAGTCGAGTGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTCTCTCTCACGGGGCGATCGTCTA-GAAGAAAAGGCCACACAAGACTGC---------------GCAGGTGGCAAGC----------------------------------------------------------------GGCGGGCGGCTGCATC-------TACCCTGGGGCAT-TTACATGGGGCAGGG-----------------------TGTCCAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504543 262 - 121039945 AATCCTCCTGATGGCAGGCCAGTCAGAAACA---CTCTGGGCATCCGT---GGCACTTCCGTTCATACCTGCCCTCTTTCAAAGAAGCTGGGATGCTCTCTTTTGAGTCGAGTGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTCTCTCTCACGGGGCGATCGTCTA-GAAGAAAAGGCCACAGAAGACTGC---------------GCAGGTGGCAAGT----------------------------------------------------------------GGCGGGCGGCTGCATC-------CACCCTGGGGCAT-CTACACAGGGCAGGG-----------------------TGTCCAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457224 262 - 180051392 AATCCTCCTGACAGCAGGCCAGTCAGAAACA---CTCTGGGCATCCAT---GGCACTTCTGTTCATACCTGCCCTCTTTCAAAGAAGCTGGGACGCTCTCTTTTGAGTCGAGTGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTCTCTCTCACGGGGCGATCATCTA-GAAGAAAAGGCCACAGAAGACTGC---------------GCAGGTGGCAAGC----------------------------------------------------------------AGTGGGCGGCTGCGTC-------CACCCTGGGGCAT-CTGCACAGGGCAGGG-----------------------TGTCCAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188346 262 - 181584905 AATCCTCCTGACAGCAGGCCAGTCAGAAACA---CTCTGGGCATCCAT---GGCACTTCTGTTCATACCTGCCCTCTTTCAAAGAAGCTGGGACGCTCTCTTTTGAGTCGAGTGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTCTCTCTCACGGGGCGATCATCTA-GAAGAAAAGGCCACAGAAGACTGC---------------GCAGGTGGCAAGC----------------------------------------------------------------AGTGGGCGGCTGCGTC-------CACCCTGGGGCAT-CTGCACAGGGCAGGG-----------------------TGTCCAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183199 262 -   1764207 AATCCTCCTGACAGCAGGCCAGTCAGAAACA---CTCTGGGCATCCAT---GGCACTTCTGTTCATACCTGCCCTCTTTCAAAGAAGCTGGGACGCTCTCTTTTGAGTCGAGTGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTCTCTCTCACGGGGCGATCATCTA-GAAGAAAAGGCCACAGAAGACTGC---------------GCAGGTGGCAAGC----------------------------------------------------------------AGTGGACGGCTGCGTC-------CACCCTGGGGCAT-CTGCACAGGGCAGGG-----------------------TGTCCAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      198199 262 -  16742782 AATCCTCCTGACAGCAGGCCAGTCAGAAACA---CTCTGGGCATCCAT---GGCACTTCTGTTCATACCTGCCCTCTTTCAAAGAAGCTGGGACGCTCTCTTTTGAGTCGAGTGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTCTCTCTCACGGGGCGATCATCTA-GAAGAAAAGGCCACAGAAGACTGT---------------GCAGGTGGCAAGT----------------------------------------------------------------GGTGGGCGGCTGCGTC-------CACCCTGGGGCAT-CTGCACAGGGCAGGG-----------------------TGTCCAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90507215 262 -  91010382 AATCCTCCTGACAGCAGGCCAGTCAGAAACA---CTCTGGGCGTCCGT---AGCACTTCTGTTCATACCTGCCCTCTTTCAAAGAAGCTAGGACGCTCTCTCTCGAGTCGAGCGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTCTCTCTCACGGGGCGATCGTCTA-GAAGAAAAGGCCACAGAAGACTGT---------------GCAGGTGGCAAGC----------------------------------------------------------------GGTGGGTGGCTGCGTC-------CACCCTGGGGCAT-CTGCACAGGGCAGGG-----------------------TGTCCAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       80747 262 -    438239 AATCCTCCTGACAGCAGGCCAGTCAGAAACA---CTCTGGGCATCCAT---AGCACTTCTGTTCATACCTGCCCTCTTTCAAAGAAGCTGGGGCGCTCTCTTTTGAGTCGAGTGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTCTCTCTCACGGGGCGATCATCTA-GAAGAAAAGGCCACAGAAGACTGC---------------GCAGGTGGCAAGC----------------------------------------------------------------AGTGGGCGGCTGCGTC-------CACCCTGGGGCAT-CTGCACAGGGCAGGG-----------------------TGTCCAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130250 262 -    514179 AATCCTCCTGACGGCAGGCCCGTCAGAAACA---CTCTGGGCATCCGT---AGCACTTCTGTTCATACCTGCCCTCTTTCAAAGAAGCTGGGACGCTCTCTTTTGAGTCGAGTGAGTCCTCTGATGCAAAATGCAGTCGGGAAGCCTTCCGCTCGCTCTCTCTCACGGGGCGATCGTCTA-GAAGAAAAGGCCACAGAAGACTGC---------------GCAGGTGGCAAGC----------------------------------------------------------------GGCGGGTGGCTGCGTC-------CACCTTGGGGCAT-CTGCACAGGGCAGGG-----------------------TGTCCAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780137 254 + 204313951 AATCCTCCTGGCAGCAGGCCAGTTCCAAACA---CTCTGGGCATCCG----AGCACTTCTGTTCATACCTGCCCACTTTCAAAGCAGCTGGGATGCTCTCCTTTGAGTCCAATGAGTCCTCTGATTCAAAATGCAGCTGGGAAGCCTTCCGCTCGCTTGCTCTCACGGGGCGATCATCTA-GGAGAAAAGGCCACAGAGGACTGC---------------GCGGGTGGCA-----------------------------------------------------------------------GGTGGCCGTGTC-------CACCCTGGAGCAT-CTGCACAGGGCAGGG-----------------------TGTCTAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15935733 254 +  16417988 AATCCTCCTGGCAGCAGGCCAGTGTCAAACA---CTCTGGGCATCCA----AGCACTTCTCTTCATACCTGCCCACTTTCAAAGCAGCTGGGATGCTCTCCTTTGAGTCCATTGAGTCCTCTGATGCAAAATGCAGCTGGGAAGCCTTCCGCTCACTCTCTCTCACGGGGCGATCGTCTA-GGAGAAAAGGCCACAGAGGACTAG---------------GCGGGTGGCA-----------------------------------------------------------------------GGCGGCTGCGTC-------CACCCTGGAGCAT-CCGCACAGGGCAGGA-----------------------TGCCCGT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       16610 254 +    298490 AATCCTCCTGGCAGCAGGCCAGTGTCAAACA---CTCTGGGCGTCCA----AGCACTTCTGTTCATACCTGCCCACTTTCAAAGCAGCTGGGATGTTCTCCTTTGAGTCCAGTGAGTCCTCTGATGCAAAACGCAGCTGTGAAGCCTTCCGCTCACTCTCTCTCACGGGGCGATCGTCTA-GGAGAAAAGGCCACAGAGGACTGC---------------GCGGGTGGCA-----------------------------------------------------------------------GGCTGCTGCGTC-------CACCCTGCAGCAT-CTGCACAGGGCAGGG-----------------------TGCCTGT
i cebCap1.NW_016108158v1   I 980 I 28
s otoGar3.GL873745           1834056 202 -   2165740 ---------GGCAGCTG---------AGAGA---CTTGTGGGGCCCAT----GTATGTCCGCTCATACCTTCCAACTGTCAAAGCAGTAGGGACGCTCTCCTCTGAGCCAGGTGAGTCCTCCGAGGCAAAATGCAGACGGGAAGCCTTCCTCTCACTGGCTCTCACAGGACGGTCATCTA-GGGGAGAATGCC---CAGAACTGC---------------G--GAAGGCA-----------------------------------------------------------------------GGCAGCAGCACC-------CTCTTC-----------------------------------------------------
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11674848 379 +  42124431 AAACAGTCTACTAACAGGAGAGTCTGAACAGCTCCTCTCAATGTTCAAATAACCACTTCTGTTCATACCTTCCGGCTGTGAAAACGGCTGGGAAGCTCTGCTTCGAGTTGAGTGACTCCTCTGATGCAAACTGTAGCCGGGATGCTTTCCGCTCACTGTCTCTCACAGGACGGTCATCTAGGGATAAAATGCCAGAGAAATCAGCAGCCACCACCATGAAGCAGGTGACAGGCTCCAATGACCCAAGCCCCACAAGAGTCCCTCCCAGAACCCTTGAAGCACCTGACCTTCCCCTTGGGAATAAGGATGCTTCTATCGCACACCCTGCAGCACACTGCACCTGGCTGGGACTGCCACCACTTGCTCACAGACCTTCCAT
i canFam3.chr34            C 0 C 0

a score=161357.000000
s hg38.chr5_KI270793v1_alt      2517 30 +    126136 CCCCTCGG---GGCCAGCCCTGC---------TCCCACTAAC-----------
s panPan2.chr5             182989763 30 - 183735486 CCCCTCGG---GGCCAGCCCTGC---------TCCCGCTAAC-----------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80008 30 +    698298 CCCCTCAG---GGCCAGCCCTGC---------TCCCGCTAAC-----------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504805 30 - 121039945 CCCCTCAG---GGCCAGCCCTGC---------TCCCGCTGAC-----------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457486 30 - 180051392 CCCCTCAG---GGCCAGCCCTGC---------TCCTGCTGAC-----------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188608 30 - 181584905 CCCCTCAG---GGCCAGCCCTGC---------TCCTGCTGAC-----------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183461 30 -   1764207 CCCCTCAG---GGCCAGCCCTGC---------TCCTGCTGAC-----------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      198461 30 -  16742782 CCTCTCAG---GGCCAGCCCTGC---------TCCCACTGAC-----------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90507477 30 -  91010382 CTCCTCAG---GGCCAGCCCTGC---------TCCCGCTGAC-----------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81009 30 -    438239 CCCCTCAG---GGCCAGCCCTGC---------TCCCACTGAC-----------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130512 30 -    514179 CCCCTTGG---GGCCAGCCCTGC---------TCCCATTGAC-----------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780391 28 + 204313951 -CCCTCAG---GGGTGGCCCTGC---------GTGGGCTGA------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15935987 28 +  16417988 -CCGTCAG---GGGCGGCCCTGT---------GTAGGCTGA------------
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1834259 28 -   2165740 CCCTGCCA---GGACA--CCTGT---------CCCCACAGGC-----------
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11675227 53 +  42124431 CCCCTGGGGCCGGCCGGCCCTGCCAGAAGTATCCCCATAGGCACTGGGTCGAC
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1       16864 28 +    298490 I

a score=304740.000000
s hg38.chr5_KI270793v1_alt      2547 42 +    126136 CTAGCACCGGAATGCTGGGCTCTGGTGGTCCCACA--GCTTCCC
s panPan2.chr5             182989793 42 - 183735486 CTAGCACCGGAATGCTGGGCTCTGGTGGTCCCACA--GCTTCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80038 41 +    698298 CTAGCA-CGGAATGCTGGGCTCTGGTGGTCCCACA--GCTTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504835 42 - 121039945 CTAGCACCGGAATGCTGGGCTCTGGTGGTCCCACA--GCTTCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457516 42 - 180051392 CTAGTACAGGAATGCTGGGCTCTGGTGGTCCCACA--GCTTCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188638 42 - 181584905 CTAGTACAGGAATGCTGGGCTCTGGTGGTCCCACA--GCTTCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183491 42 -   1764207 CTAGTACAGGAATGCTGGGCTCTGGTGGTCCCACA--GCTTCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      198491 42 -  16742782 CTAGTACAGGAATGCTGGGCTCTGGTGGTCCCACA--GCCTTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90507507 42 -  91010382 CTCGTACCGGAATGCCGGGCTCTGGTGATCCCACA--GCTTCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81039 42 -    438239 CTAGTACAGGAATGCTGGGCTCTGGTGGTCCCACA--GCCTTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130542 42 -    514179 CTAGTACAGGAATGCTGGGCTCTGGTGGTCCCACA--GCTTCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780419 25 + 204313951 CTACTACAGGAAAGCTGGGC-------------------TTCCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15936015 42 +  16417988 CTAGTACAGGAACGCTGGGCTCTGGTGGTCCTGCA--GTTTCCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       16892 42 +    298490 CTAGCAAAGGAACGCTGGGCTCTGGTGGTCCCACG--GCTTCTT
i cebCap1.NW_016108158v1   I 28 C 0
s otoGar3.GL873745           1834287 44 -   2165740 CCAAGAAAGGAAATGTAGGCTTTGGTGGCTACATATGGTTTCCC
i otoGar3.GL873745         C 0 I 644
s canFam3.chr34             11675280 43 +  42124431 CCAGTGAAGGAATGCTGGGCTGT-GTGGCTACACTTGGTTTCCC
i canFam3.chr34            C 0 C 0

a score=539551.000000
s hg38.chr5_KI270793v1_alt      2589  84 +    126136 GGCGATGCCCAGCG-TGGTGCT--GAGGCC----------------GCCTGTCCCTCAGA---------------GCTCACTGCTGCGCACGGGAGCAGCCGCACACAGATGAGGCTc
s panPan2.chr5             182989835  83 - 183735486 GGCGATGCCCAGCG-TGGTGCT--GAGGCC----------------GCCTGTCCCTCAGA---------------GCTCACTGCTGCGCACAGAAGCAGCCACACACAGATGAGGCT-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80079  84 +    698298 GGCGATGCCCAGCG-TGGTGCT--GAGGCT----------------GCCTGTCCCTCAGA---------------GCTCACTGCTGCGCACGGGAGCAGCCGCACACAGATGAGGCTc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504877  68 - 121039945 GGAGATGCCCAGCG-TGGTGCT--GAGGCC----------------GCCTGTCCCTCAGA---------------GCTCACTGCTGCGCACAGGAGCAGCCG----------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457558  86 - 180051392 GGAGATACCCAGCG-TGGTGCCAAGAGGCC----------------GCCTGTCCCTCGGA---------------GCTCACTGCTGCTCAGAGGAGCAGCCGCACACGGATGAGGctc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188680  86 - 181584905 GGAGATACCCAGCG-TGGTGCCAAGAGGCC----------------GCCTGTCCCTCAGA---------------GCTCACTGCTGCTCAGAGGAGCAGCCGCACACGGATGAGGctc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183533  86 -   1764207 GGAGATACCCAGCG-TGGTGCCAAGAGGCC----------------GCCTGTCCCTCAGA---------------GCTCACTGCTGCTCAGAGGAGCAGCCTCACACGGATGAGGCTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      198533  86 -  16742782 GGAGATGCCCAGCA-TGGTGCCGAGAGGCC----------------GCCTGTCCCTCAGA---------------GCTCACTGCTGCTCAGAGGAGCAGCCGCACACGGATGAGGCTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90507549  86 -  91010382 GGAGATGCCCAGCC-TGGTGCCCAGAGGCC----------------GCCTGTCCCTCAGA---------------GCTCACTGCTGTTCACAGGAACAGCCGCACACGGATGAGGCTC
i chlSab2.chr4             C 0 I 401
s manLeu1.NW_012110441v1       81081  86 -    438239 GGAGATGCCCAGCG-TGGTGCCGAGAGGCC----------------GCCTGCCCCTCAGA---------------GCTCACTGCTGCTCAGAGGAGCAGCCGCACATGGATGAGactc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130584  86 -    514179 GGAGACACCCAGCG-TGCTGCCCAGAGGCC----------------GCCTGTCCCTCAGA---------------GCTCACTGCTGCTCACAGGAGCAGCCGCACACGGATGAGGCTc
i colAng1.NW_012118799v1   C 0 I 42
s calJac3.chr2             203780444  84 + 204313951 GGAGATGCCCAGCG-TGGTGCCGAGA-GCC----------------ACCTGTTCCTCAGA---------------GCTCACTGCTGCTCACAGGCGCAGCTGCACATGGACCAGGCT-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15936057  84 +  16417988 GGAGATGCCCAGCG-TGGTGCCGAGA-GCC----------------GCCTGTTCATCAAA---------------GCTCACTGCTGCTCACAGGCACAGCTGCACATGGACCAGGCT-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       16934  84 +    298490 GGAGATGCCCAGCA-TGGTGCCGAGA-ACC----------------GCCTGTTCCTCAGA---------------GCTCACTGCTGCTCACAGGCACAGCTGCACACGGACCAGACT-
i cebCap1.NW_016108158v1   C 0 C 0
s canFam3.chr34             11675323 116 +  42124431 AGAGATGCCGAGGACTGATTCCGAGAGGGCTGGCCTACTCACATAAAGCTACTCCTCAGACACTACACTTTGGAGGCAGCCTGCAGCCCATAGGAAAAGAAATCCACATGCAATTC--
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I

a score=47213.000000
s hg38.chr5_KI270793v1_alt      2673 6 +    126136 acacac
s panPan2.chr5             182989918 5 - 183735486 -CACAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80163 6 +    698298 acacac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504945 5 - 121039945 -CACAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457644 6 - 180051392 acacac
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181188766 6 - 181584905 acacac
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183619 6 -   1764207 ACACAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      198619 6 -  16742782 Acacac
i cerAty1.NW_012009470v1   C 0 I 204
s chlSab2.chr4              90508036 6 -  91010382 acacac
i chlSab2.chr4             I 401 C 0
s manLeu1.NW_012110441v1       81167 6 -    438239 acacac
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130712 6 -    514179 acacac
i colAng1.NW_012118799v1   I 42 C 0
s calJac3.chr2             203780528 5 + 204313951 -CACAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15936141 5 +  16417988 -CACAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       17018 5 +    298490 -CTCAC
i cebCap1.NW_016108158v1   C 0 C 0
s canFam3.chr34             11675439 6 +  42124431 ACAAAC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I

a score=16905.000000
s hg38.chr5_KI270793v1_alt      2679 2 +    126136 ac
s panPan2.chr5             182989923 2 - 183735486 AC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80169 2 +    698298 ac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504950 2 - 121039945 AC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457650 2 - 180051392 ac
i rheMac8.chr6             C 0 I 136
s macFas5.chr6             181188772 2 - 181584905 ac
i macFas5.chr6             C 0 I 136
s macNem1.NW_012012389v1      183625 2 -   1764207 AC
i macNem1.NW_012012389v1   C 0 I 150
s cerAty1.NW_012009470v1      198829 2 -  16742782 ac
i cerAty1.NW_012009470v1   I 204 C 0
s chlSab2.chr4              90508042 2 -  91010382 ac
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81173 2 -    438239 ac
i manLeu1.NW_012110441v1   C 0 I 180
s colAng1.NW_012118799v1      130718 2 -    514179 ac
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780533 2 + 204313951 AC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15936146 2 +  16417988 AC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       17023 2 +    298490 AC
i cebCap1.NW_016108158v1   C 0 C 0
s canFam3.chr34             11675445 2 +  42124431 AG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I

a score=1078629.000000
s hg38.chr5_KI270793v1_alt      2681 165 +    126136 --------------acacgcacacCCTTTCTCTAAAGTGCACACCGGGTGCGGGGTGGGATTCTCAAGTCACACTCAG-----GTAA--------CCCAGAGAAGCCTCCACGG--------AGGGAGCCTGCC-------------CGGCCCGAGAGGCTGCAACTT------------------------------------CCAGGAGGCCTTT----------------TGGGTCTGTGCTTAGGG---CTGGGCCTCAGGGAC
s panPan2.chr5             182989925 165 - 183735486 --------------ACACGCACACCCTTTCTCTAAAGTGCACACCGGGTGCGGGGTGGGATTCTCAAGTCACACTCAG-----GTAA--------CCCAGAGAAGCCTCCAAGG--------AGGGAGCCTGCC-------------CGGCCCGAGAGGCTGCAACTT------------------------------------CCAGGAGGCCTTT----------------TGGGTCTGTGCTTAGGG---CTGGGCCTCAGGGAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80171 165 +    698298 --------------acacgcacacCCTTTCTCTAAAGTGCACACCGGGTGCGGGGTGGGATTCTCAAGTCACACTCAG-----GTAA--------CCCAGAGAAGCCTCCATGG--------AGGGAGCCTGCC-------------CGGCCCGAGAGGCTGCAACTT------------------------------------CCAGGAGGCCTTT----------------TGGGTCTGTGCTTAGGG---CTGGGCCTCAGGGAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120504952 165 - 121039945 --------------ACACGCACACCCTTTCTCTAAAGTGCACACCGGGTGCGGGGTGGGATCCTCAAGTCACACTCGG-----GTAA--------CCCAGAGAAGCCTCCACGG--------AGGGAGCCTGCC-------------CAGCCCGAGAGGCTGCAACTT------------------------------------CCAGGAGGCCTTT----------------TGGGTCTGTGCTTAGGG---CTGGGCCTCAGGGAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457788 165 - 180051392 --------------acacacacaCCCTTTCTCTAAAGTGCACGCCGGGTGTGAGGTGGGATTCTTAAGTCACACTTGG-----GTAA--------CCCAAAGAAGCCTCCAGGG--------AGGGAGGCTGCC-------------CGGCTCGTGAGGCTGCACCTT------------------------------------CCAGGGGGCCTTT----------------AGGGTCTGTGCTTAGGG---CTGGACCTCAGGGAC
i rheMac8.chr6             I 136 C 0
s macFas5.chr6             181188910 165 - 181584905 --------------acacacacaCCCTTTCTCTAAAGTGCACGCCGGGTGTGAGGTGGGATTCTTAAGTCACACTTGG-----GTAA--------CCCAAAGAAGCCTCCAGGG--------AGGGAGGCTGCC-------------CGGCTCGTGAGGCTGCACCTT------------------------------------CCAGGGGGCCTTT----------------AGGGTCTGTGCTTAGGG---CTGGACCTCAGGGAC
i macFas5.chr6             I 136 C 0
s macNem1.NW_012012389v1      183777 165 -   1764207 --------------acacacacacCCTTTCTCTAAAGTGCACGCCGGGTGTGAGGTGGGATTCTTAAGTCACACTTGG-----GTAA--------CTCAGAGAAGCCTCCAGGG--------AGGGAGGCTGCC-------------CGGCTCGTGAGGCTGCACCTT------------------------------------CCAGGGGGCCTTT----------------AGGGTCTGTGCTTAGGG---CTGGACCTCAGGGAC
i macNem1.NW_012012389v1   I 150 I 20
s cerAty1.NW_012009470v1      198831 163 -  16742782 --------------acacacacaCCCTTTCTCTAAAGTGCACGCCGGGTGTGAGGTGGGATTCTTAAGTCACACTCGG-----GTAA--------CCCAGAGAAGCCTCCAGGG--------AGGGAGGCTGCC-------------CGGCTCGTGAGGCTGCACCTT------------------------------------CCAGGGGGCCTTT----------------AGGGTCTGTGCTTAGGG---CTAGACCTC--GGAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508044 164 -  91010382 --------------atacacacacCCTTCCTCTAAAATGCACACCGGGTGTGAGGTGGGATTCTCAA-TCACACTCGG-----GTAA--------CCCAGAGAAGCCTCCAGGG--------AGGGAGGCTGCC-------------CGGCCCGTGAGGCTGCACCTT------------------------------------CCAGGGGGCCTTT----------------AGGGTCTGTGCTTAGGG---CTGGACCTCAGGGAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81355 163 -    438239 --------------acacacacacCCTTTCTCTAAAGTGCATACTGGGTGTGAGGTGGGATTCTCAAGTCACACTCGG-----GTAA--------CCCAGAGAAGCCTCCAGGG--------AGGGAGGCTGCC-------------CGACTCGTGAGGCTGCACCTT------------------------------------CCAGGGGGCCTTT----------------AGGGTCTGTGCTTAGGG---CTAGACCTC--GGAC
i manLeu1.NW_012110441v1   I 180 C 0
s colAng1.NW_012118799v1      130720 165 -    514179 --------------acacacacacCCTTTCTCTAAAGTGCACAACGGGTGTGAGGTGGGATTCTCAAGTCACACTCGG-----GTAA--------CCCAGAGAAGCCTCCAGGG--------AGGGAGGCTGCC-------------TGGCCCGTGAGGCTGCAACTT------------------------------------CCAGGGGGCCTTT----------------AGGGTCTGTGCTTAGGG---CTGGACCTCAGGGAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780535 161 + 204313951 --------------GCACGCACACCCTTTCTCCAATGTGTACAGTGGGTGCAGGGTGGGATTCTCAAGTCACACTCAG-----GCA----------ACAGAGGACCTTCCATGG-------AAAGGAACCTGCC-------------CGGGCCGTGAGG--GCTACAT------------------------------------TCAGG-GGCCTTT----------------TGGGTCTGTGCTTAGGG---CTGGACCTCATGGCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15936148 162 +  16417988 --------------GCATGCACACTCTTTCTTTAGCACGTACAGCAGGTGCAGGGT-GGATTCTCAAGTCACACTGAG-----GTAA--------CACAGAGGACCCTCCATGG-------AAGGGAACCTGCC-------------CAGGCCGTGAGG--GCAACTT------------------------------------TCAGG-GGCCTGT----------------TGGGTCTGTGCTTAGAG---CTGGACCTCATGGTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       17025 163 +    298490 --------------ACATGCACACCCTTTCTCTAACGTGTACAGTGGGTATGGGGTGGGATTCTCAAGTCACATTCAG-----GCAA--------CACAGAGGACCCTCCATGG-------AAGGGAACATGCC-------------CGGGCCGTGAGG--GCAGCTT------------------------------------TCAGG-GGCCTTT----------------TGGGTCTGTGCTTAGGG---CTGGACCTCATGGTC
i cebCap1.NW_016108158v1   C 0 C 0
s canFam3.chr34             11675447 267 +  42124431 GCACTTCCTTGGCAGCACGTTCAC-CTTCTTTTAATACACATTCTGGGTACCCAATGAGGTtcttgaaccacactgagcacatgtgagttgtctctgtagataagagtcccgaacatgttaaagagaggatgtcgtggccacatgtttgggcctagggtttacatcctcagttccaacgtttcaactgttcccacatgTGTGCCCCAGAAGGCCTCTACTTAGTTCTTACTCCTCGGTCTTCCCTTAGAATATCTGAGGTTTAAGATG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I

a score=74956.000000
s hg38.chr5_KI270793v1_alt      2846 32 +    126136 ----------------GTGCGTAC-CTGGGGCCACCAGG---------------------CT-CCCACCCA----
s panPan2.chr5             182990090 32 - 183735486 ----------------GTGCGTAC-CTGGGGCCGCCAGG---------------------CT-CCCACCCA----
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80336 32 +    698298 ----------------GTGCGTAC-CTGGGGCCGCCAGG---------------------CT-CCCACCCA----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505117 33 - 121039945 ----------------GTGCGTAC-CTGGGGCCACCAGG---------------------CTCCCCACCCA----
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457953 20 - 180051392 ----------------ACGCATGC-CCAG--------------------------------G-CCTACCC-----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189075 20 - 181584905 ----------------ACGCATGC-CCAG--------------------------------G-CCTACCC-----
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      198994 31 -  16742782 ----------------ACGCATGC-CCGGGGCCACCAGG---------------------CG-CCCACCC-----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508208 31 -  91010382 ----------------ACGCATGC-CCGGGGCCACCAGG---------------------CT-CCCACCC-----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81518 31 -    438239 ----------------ACGCATGC-CCGGGGCCACCAGG---------------------CT-CCCACCC-----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130885 31 -    514179 ----------------ACACATGC-CCGGGGCCACCAGG---------------------CT-CCCGCCC-----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780696 31 + 204313951 ----------------ATGGGTGC-CCAGGGCCATGAAG---------------------CT-TCCACCC-----
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          15936310 31 +  16417988 ----------------ATGGGTGC-CCGGGGCCATGAGG---------------------CT-TCCATCC-----
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       17188 31 +    298490 ----------------ATGGGTGC-CCAGGGCCAAGAAG---------------------CT-TCCACCC-----
i cebCap1.NW_016108158v1   C 0 I 1
s canFam3.chr34             11675714 73 +  42124431 GTTCCCAACATGAAAAGTCAATGCTTTGgggacacctggacggctcagtcggtgaagtgtct-gccatca-cctc
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e macNem1.NW_012012389v1      183942 20 -   1764207 I

a score=276915.000000
s hg38.chr5_KI270793v1_alt      2878 38 +    126136 AGAAC----TCCTGGAGCTTCCTCATGTAAATCCCTG----AAGAT----------
s panPan2.chr5             182990122 38 - 183735486 AGAAC----TCCTGGAGCTTCCTCATGTAAATCCCCG----AAGAT----------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80368 38 +    698298 AGAAC----TCCTGGAGCTTCCTCATGTAAATCCCTG----AAGAT----------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505150 38 - 121039945 AGAAC----TCCTGGAGCTTCCTCATGTAAATCCCCG----AAGAT----------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179457973 38 - 180051392 AGAAC----TTCTGGAGCTTCCTTATGTAAATCCCTG----GAGAT----------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189095 38 - 181584905 AGAAC----TTCTGGAGCTTCCTTATGTAAATCCCTG----GAGAT----------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      183962 38 -   1764207 AGAAC----TTCTGGAGCTTCCTTATGTAAATCCCTG----GAGAT----------
i macNem1.NW_012012389v1   I 20 I 374
s cerAty1.NW_012009470v1      199025 38 -  16742782 AGAAC----TTCTGGAGCTTCCTTATGTAAATCCCTG----GAGAT----------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508239 38 -  91010382 AGAAC----TTCTGGAGCTTCCTTATGTAAATCCCTG----GAGAT----------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81549 38 -    438239 AGAAC----TTCTGGAGCTTCCTTATGTAAATCCCTG----GAGAT----------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130916 38 -    514179 AGAAC----TCCTGGAGCTTCCTTATGTAAATCCCTG----GAGAT----------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780728 38 + 204313951 AGAAC----TCCTGGAGCTTCCTTGCATGAATCCCTG----AAGAT----------
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          15936342 38 +  16417988 AGAAC----TCCTGGAGCTTCCTGGCATGAATCCCTG----AAGAT----------
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1       17220 38 +    298490 AGAAC----TCCTGGAGCTTCCTTTCGTGAATCCCTA----AAGAT----------
i cebCap1.NW_016108158v1   I 1 C 0
s canFam3.chr34             11675787 54 +  42124431 aggtcatgatcctgggg--tcctgggatcaagccccacaacgggatcctcgctgag
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I

a score=352493.000000
s hg38.chr5_KI270793v1_alt      2916  62 +    126136 AAGAAGGTC---------------------CCCAGGCCTTC-------------------------------------------------------------------AACCTTGGCGCTTTGGAACTTACAACACATCTTAACCCCCAT
s panPan2.chr5             182990160  62 - 183735486 AAGAAGGTC---------------------CCCAGGCCTTC-------------------------------------------------------------------AACCTTGGCGCTTTGGAACTTGCAACACATCTTAACCCCCAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80406  62 +    698298 AAGAAGGTC---------------------CCCAGGCCTTC-------------------------------------------------------------------AACCTTGGCGCTTTGGAACTTACAACACATCTTAACCCCCAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505188  62 - 121039945 AAGAAGGTC---------------------CCCAGGCCTCC-------------------------------------------------------------------AACCTTGGCGCTTTGGAACTTGCAACACATCTTAACCCCCAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179458011  62 - 180051392 AAGAAGGTC---------------------CCCAGGCCTCC-------------------------------------------------------------------AACCTCGGTGCTCTGGAACTTGTAACACATCTTAGCCCCTAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189133  62 - 181584905 AAGAAGGTC---------------------CCCAGGCCTCC-------------------------------------------------------------------AACCTCGGTGCTCTGGAACTTGTAACACATCTTAGCCCCTAC
i macFas5.chr6             C 0 I 318
s cerAty1.NW_012009470v1      199063  62 -  16742782 AAGAAGGTC---------------------CCCAGGCCTCC-------------------------------------------------------------------AACCTCAGCGCTCTGGAACTTGCAACACATCTTAGCCCCTAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508277  62 -  91010382 AAGAAGGTC---------------------CCCAGGCCTCC-------------------------------------------------------------------AACCTCGGCACTCTGGAACTTGCAACACATCTTAGCCCCCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81587  62 -    438239 AAGAAGGTC---------------------CCCAGGCCTCC-------------------------------------------------------------------AACCTCAGCGCTCTGGAACTTGCAACACATCTTAGCCCCTAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      130954  62 -    514179 AAGAAGGTC---------------------CCCGGGCCTCC-------------------------------------------------------------------AACCTCAGCGCTCTGGAACTTGCAACACACCTTAGCCCCCAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780766  62 + 204313951 AAGAAGGTC---------------------CTCAGGCCTTC-------------------------------------------------------------------AACACTGGTGCTTTGGAACTTGTAACACATTTTAATCTGCAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15936380  62 +  16417988 AAGAAGGTC---------------------CTCAGGCCTTC-------------------------------------------------------------------AACACTGGCGCTTTGGAACTTGTAACACATTTTAATTCCCAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       17258  62 +    298490 AAGAAGGTC---------------------CTCAGGCCTTC-------------------------------------------------------------------AACACTGGCGCTTTGGAACTTGTAACACTTTTTAATCCCTAT
i cebCap1.NW_016108158v1   C 0 C 0
s canFam3.chr34             11675841 149 +  42124431 tggagagtctgctcttccctctgcctctgatccatgccgcccccctgccctacttgtgctcgctttctgtctctcaaataaataaaatcttaaagaaaaaAAAAAAAGAAAGTCAATGCTTTGGACCAT-TAACACATCCCACCACAGAA
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e macNem1.NW_012012389v1      184000 374 -   1764207 I

a score=11396.000000
s hg38.chr5_KI270793v1_alt      2978 2 +    126136 TT
s panPan2.chr5             182990222 2 - 183735486 TT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80468 2 +    698298 TT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505250 2 - 121039945 TT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179458073 2 - 180051392 TC
i rheMac8.chr6             C 0 I 320
s macFas5.chr6             181189513 2 - 181584905 TC
i macFas5.chr6             I 318 C 0
s cerAty1.NW_012009470v1      199125 2 -  16742782 TC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508339 2 -  91010382 TC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81649 2 -    438239 TC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131016 2 -    514179 TC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780828 2 + 204313951 TC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15936442 2 +  16417988 TC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       17320 2 +    298490 TC
i cebCap1.NW_016108158v1   C 0 C 0
s canFam3.chr34             11675990 2 +  42124431 TT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e macNem1.NW_012012389v1      184000 374 -   1764207 I

a score=1063684.000000
s hg38.chr5_KI270793v1_alt      2980 159 +    126136 GTAATGTGAATTCTGTGACAAGTTCCCACGCTGCCTC--------CATTTAGCCTACAGCACGCCCCAAAAACTACAGAATCACTGTAAG-AAATGAGTGAGTAATAGCATAAT-ATAATGTTCAAAGCAGAAAAACGGAGGAGTTCTGATAATCACACAAAGATGCCG
s panPan2.chr5             182990224 159 - 183735486 GTAATGTGAATTCTGTGACAAGTTCCCACGCTGCCTC--------CATTTAGCCTACAGCACGACCCAAAAACTATAGAATCACAGTAAG-AAATGAGTGAGTAATAGCACAAT-ATAATGTTCAAAGCAGAAAAACGGAGGAGTTCTGATAATCACACAAAGATGCCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80470 159 +    698298 GTAATGTGAATTCTGTGACAAGTTCCCACGCTGCCTC--------CACTTAGCCTACAGCACGCCCCAAAAACTATAGAATCACAGTAAG-AAATGAGTGAGTAATAGCACAAT-ATAAGGTTCAAAGCAGAAAAACGGAGGAGTTCTGATAATCACACAAAGACGCCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505252 159 - 121039945 GTAACGTGAATTCTGTGACAAGTTCCCATGCTGCCTC--------CATTTAGCCTACAGCACGCCCTGAAAACCATAGAATCACAGTAAG-AAATGAGTAGGTAATAGCGCAAT-ATAATGTTCAAAGCAGAAAAACAGAGGAATTCTGATAATCACACAAAGATGCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179458395 154 - 180051392 GTAATGTTAAATCTGTGACAAGTTCCCA-GTTGCCTC--------CATTGAGCCTATAGCACACCTCGAAAACTACATAATTACAGTAAG-AAATGA----GTAACAGCACAAC-ATAATGTGCAAAGCAGAAAAACAGAGGAGTTCTGAAAATCACACAAAGGTGCCA
i rheMac8.chr6             I 320 C 0
s macFas5.chr6             181189515 154 - 181584905 GTAATGTTAAATCTGTGACAAGTTCCCA-GTTGCCTC--------CATTGAGCCTATAGCACACCTCGAAAACTACATAATTACAGTAAG-AAATGA----GTAACAGCACAAC-ATAATGTGCAAAGCAGAAAAACAGAGGAGTTCTGAAAATCACACAAAGGTGCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184374 154 -   1764207 GTAATGTTAAATCTGTGACAAGTTCCCA-GTTGCCTC--------CATTGAGCCTATAGCACACCTCGAAAACTACATAATTACAGTAAG-AAATGA----GTAACAGCACAAC-ATAATGTGCAAAGCAGAAAAACAGAGGAGTTCTGAAAATCACACAAAGGTGCCA
i macNem1.NW_012012389v1   I 374 C 0
s cerAty1.NW_012009470v1      199127 154 -  16742782 GTAATGTTAAATCTGTGACAAGTTCCCA-GCTGCCTC--------CATTGAGCCTATAGCACACCTCGAAAACTACATAATTACAGTAAG-AAATGA----GTAACAGCACAAC-ATAATGTGCAAAGCAGAAAAACAGAGGAGTTCTGAAAATCACACAAAGGTGCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508341 154 -  91010382 GTAATGTTAAATCTGTGACAAGTTCCCA-GCTGCCTC--------CATTGAGCCTATAGCACACCTTGAAAACTACATAATTACAGTAAG-AAATGA----GTAACAGCACAAC-ATAATGTGCAAAGCAGAAAAACTGAGGAGTTCTGAAAATCACACAAAGGTGTCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81651 154 -    438239 GTAATGTTAAATCTGTGACAAGTTTCCA-GCTGCCTC--------CATTGAGCCTATAGCACACCTCAAAAACTACATAATTACAGTAAG-AAATGA----GTAACAGCACAAC-ATAATGTGCAAAGCAGAAAAACAGAGGAGTTCTGAAAATCACACAAAGGTGCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131018 154 -    514179 GTAATGTTACATCTGTGATAAGTTCCCA-GCTGCCTC--------CATTGAGCCTAGAGCACACCTCGAAAACTACATAATTACAGTAAG-ACATGA----GTAACAGCACAAC-ATAATGTGCAAAGCAGATTTTCAGAGGAGTTCTGAAAATCACACAAAGGTGCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780830 159 + 204313951 GTGACATTAATTCTGTGATGAGTTCCCACACTGCCTC--------CATTTAGCCTACAGCATACCCTGAGAACTATATAATTACAGTCAG-ACATGAGCAAGTGATAGCACAAT-ATAATTTTCAAAGCAGAAAAACAGAGGAGTTCTGAAAATCACATAAAAATGCCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15936444 156 +  16417988 GTGATGTTAATTCTGTGACAAGCTCCCACACAGCCTC--------CACATAGCCTACAGCACACCTTGAGAACTATATAATTACAGTCAG-ACCTGAGCAAGTGATAGCACAAC-ATAATTTTCAAAGCAGAAAAACA---GAGTTCTGAAAATCACACAAAGATGGCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       17322 159 +    298490 GTGACGTTAATTCTGTTACGAGTTCCCATACTGCCTC--------CCTTTAGCCTACAGCACACCTTGAGAACTATACAATTACAGTCAG-ACATGGGCAAGGGATAGCACAAT-ATAATTTTCAAAGCAGAAAAACAGAGGAATTCTGAAAATCACACAAAGATGCCg
i cebCap1.NW_016108158v1   C 0 I 3217
s canFam3.chr34             11675992 159 +  42124431 --AATATTACAATGGT--TAAATTCCAAACCTGCTTCCCAAAGAGCATTTAATCTATGGCACACTCCAAAAAGTATACCATTACAAAAAGCAAATGA----ATAACAAATCAATAACCACTGTCAAAGTGGA-AAACAAAGGAGTTGTGCAAATCATACACAAGTGCC-
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I

a score=448847.000000
s hg38.chr5_KI270793v1_alt      3139 86 +    126136 AGTCAGAGGCCTCTGCAACCTGGGGCACTCTCCACCCAGCACACAGGGCACCCTCAGGAGACAC-GTGCGCCAGGAGA------CCTG-CACCC
s panPan2.chr5             182990383 86 - 183735486 AGTCAGAGGCCTCTGCAACCTGGGGCTCTCTCCACCCAGCACACAGGGCACCCCCAGGAGACAC-GTGCGCCAGGAGA------CCTG-CACCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80629 86 +    698298 AGTCAGAGGCCTCTGCAACCTGGGGCTCTCTCCACCCAGCACACAGGGCACCCCCAGAAGACAC-GTGCGCCAGGAGA------CCTG-CACCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505411 87 - 121039945 AGTCAGAGGCCTCTGCAACCTGGGGCGCTCTCCACCCAGCACACAGGACGTCCCCAGGAGACAC-GTGCGCCAGGAGA------CCTGCCCCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179458549 81 - 180051392 AGTCAGAGGCCTCTGCAACCTGGGGCGCTCTCCACCCAGCACACATGACGCCCCCAGGAGACAT-GGGCACCAGGAGA------CCTG------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189669 81 - 181584905 AGTCAGAGGCCTCTGCAACCTGGGGCGCTCTCCACCCAGCACACATGACGCCCCCAGGAGACAT-GGGCACCAGGAGA------CCTG------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184528 81 -   1764207 AGTCAGAGGCCTCTGCAACCTGGGGCGCTCTCCACCCAGCACACATGACGCCCCCAGGAGACAT-GGGCACCAGGAGA------CCTG------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199281 80 -  16742782 AGTCAGAGGCCTCTGCAACCTGGGGCGCTCTCCA-CCAGCACACATGACACCCCCAGGAGACAC-GGGCGCCAGGAGA------CCTG------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508495 81 -  91010382 AGTCAGAGGCCTCTGCAACCTGGGGCGCTCTCCACTCAGCACACATGATGCCCCCAGGAGACAC-GGGCACCAGGAGA------CCTG------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81805 80 -    438239 AGTCAGAGGCCTCTGCAACCTGGGGCGCTCTCCAC-CAGCACACATGACACCCCCAGGAGACAC-GGGCGCCAGGAGA------CCTG------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131172 81 -    514179 AGTCAGAGGCCTCTGCTACCTGGGGCGCTCTCCACCCAGCACACATGACACCCCCAAGAGACAT-GGGGGCCACGAGA------CCTG------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203780989 87 + 204313951 AGTGCAAGGCCGCTGCGGCCTGAGGCCCTTTCCACCCTGCACACAGGACGCCCCCAGGAGACCCTGTGAGCCCAGAGA------CATG-CCCCC
i calJac3.chr2             C 0 I 2030
s saiBol1.JH378155          15936600 87 +  16417988 AGTGCAAGGCCTCTGTGGCCTGGGGCCCTCTCCACCCTGTACACAGGACGCCCCCAGAAGACCCGGTGAGCCCAGACA------CATG-CCCCC
i saiBol1.JH378155         C 0 I 6810
s canFam3.chr34             11676151 68 +  42124431 --TCTGGGGGCTATGC--CCTG--------------CTGCACGTGGGACA-CCCCAGGAGCTCC-CCTCCTCAAGACACAACTGCCTG------
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       17481 3217 +    298490 I

a score=-536.000000
s hg38.chr5_KI270793v1_alt      3225 3 +    126136 -AAT
s panPan2.chr5             182990469 3 - 183735486 -AAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80715 3 +    698298 -AAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505498 3 - 121039945 -GAC
i nomLeu3.chr6             C 0 C 0
s canFam3.chr34             11676219 3 +  42124431 AGA-
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       17481 3217 +    298490 I
e saiBol1.JH378155          15936687 6810 +  16417988 I
e calJac3.chr2             203781076 2030 + 204313951 I
e manLeu1.NW_012110441v1       81885 0 -    438239 C
e chlSab2.chr4              90508576 0 -  91010382 C
e cerAty1.NW_012009470v1      199361 0 -  16742782 C
e colAng1.NW_012118799v1      131253 0 -    514179 C
e macNem1.NW_012012389v1      184609 0 -   1764207 C
e macFas5.chr6             181189750 0 - 181584905 C
e rheMac8.chr6             179458630 0 - 180051392 C

a score=54487.000000
s hg38.chr5_KI270793v1_alt      3228 14 +    126136 CCCACCCTCCCGCA
s panPan2.chr5             182990472 14 - 183735486 CCCACCCTCCCGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80718 14 +    698298 CCCACCCTCCCGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505501 14 - 121039945 CCCACCATCCCGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179458630 10 - 180051392 ----CCCTCCCGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189750 10 - 181584905 ----CCCTCCCGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184609 10 -   1764207 ----CCCTCCCGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199361 10 -  16742782 ----CCCTCCCGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508576 10 -  91010382 ----CCCTCCCGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81885 10 -    438239 ----CCCTCCCGCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131253 10 -    514179 ----CCCTCCCGCA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15943497 14 +  16417988 CCCACAGCCCCGCA
i saiBol1.JH378155         I 6810 C 0
s canFam3.chr34             11676222 14 +  42124431 GATGCCATCTCTCA
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       17481 3217 +    298490 I
e calJac3.chr2             203781076 2030 + 204313951 I

a score=481764.000000
s hg38.chr5_KI270793v1_alt      3242 78 +    126136 ACCTTTCCACCCCGGCCTTCACCAGCCCCGCACTAACGACGCATAGCTCTCTGCCCACCAAGAC-TCGCTTCCCTTCTG
s panPan2.chr5             182990486 78 - 183735486 ACCTTTCCACCCTGGCCTTCACCAGCCCCGCACTAACGACGCATAGCTCTCTGCCCACCAAGAC-TCGCTTCCCTTCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80732 78 +    698298 ACCTTTCCACCCCGGCCTTCACCAGCCCCGCACTAACGACGCATAGCTCTCTGCCCACCAAGAC-TCGCTTCCCTTCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505515 79 - 121039945 ACCGTTCCACCCCAGCCTTCACCCGCCCTGCACTAACAACGCGTAGCTCTCTGCCCACCGAGACTTTGCCTCACTGCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179458640 79 - 180051392 ACCTTTCCACCCCGGCCTTCACCCACCCTGCGCTAACGACGCACAGCTCTCTGCCCACCAAGACTTCGCTTCACTTCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189760 79 - 181584905 ACCTTTCCACCCCGGCCTTCACCCACCCCGCGCTAACGACGCACAGCTCTCTGCCCACCAAGACTTCGCTTCACTTCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184619 79 -   1764207 ACCTTTCCACCCCGGCCTTCACCCACCCCGCGCTAACGACGCACAGCTCTCTGCCCACCAAGACTTCGCTTCACTTCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199371 79 -  16742782 ACCTTTCCACCCCGGCCTTCACCCGCCCCGCACTAACGACGCACAGCTCTCTGCCCACCAAGACTTCGCTTCACTTCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508586 79 -  91010382 ACCTCTCCACCCCGGCCTTCACCCGCCCCGCACTGACGACGCACAGCTCTCTGCCCACCACGACTTCGCTTCACTTCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81895 79 -    438239 ACCTTTCCACCCCGGCCTTCACCCGCCCCGCACTAACAACGCACAGCTCTCTGCCCACCAAGACTTCGCTTCACTTCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131263 79 -    514179 ACCTTTCCACCCCGGCCTTCACCCGCCCCGCGCTGACGACGAACAGCGCTCTGCCCGCCAAGACTTCGCTTCCCTTCTG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15943511 75 +  16417988 -CCCTTCTACCCTGGCGTTCACCTGCCCTGTAT---TAACACACAGCCGTCTGTCCACCAAGACTTCGCTTTGCTCCTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       20698 79 +    298490 ACCCTTCCACCCCGGCCTTCACCCGCCCTGCACCAACAACACACAGCTCTCTGTCCACCAAGACTTTGCTTTGCTCCCT
i cebCap1.NW_016108158v1   I 3217 C 0
s canFam3.chr34             11676236 65 +  42124431 ------------TGGCTTGGACACTTGCCTGATGGCTAACACACAGC--TCTACTCACTTAGCCTTTGCTTCACTTCTG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I

a score=782953.000000
s hg38.chr5_KI270793v1_alt      3320 104 +    126136 AGTCAGTTCCAAATCCCG-TACTCCAAGAACATTTCTCTGGACTGTT---GTGTAAATTCTAATGCAGCATGTCCGAAGCCAACTGCAAACTCACCTTCACCCCAAGC
s panPan2.chr5             182990564 105 - 183735486 AGTCAGTTCCAAATCCCGTTACTCCAAGAACATTTCTCTGGACTGTT---GTGTAAATTCTAATGCAGCATGTCCGAAGCCAACTGCAAACACACCTTCACCCCAAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80810 104 +    698298 AGTCAGTTCCAAATCCCG-TACTCCAAGAACATTTCTCTGGACTGTT---CTGTAAATTCTAATGCAGCATGTCCGAAGCCAACTGCAAACTCACCTTCACCCCAAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505594 102 - 121039945 AGTCAGTTCCAAATCCC--CACTCCAAGAACGTTCCTCTTGACTGTT---GTGTAAATTCTAACGCAGCACGTCCG-AGCCGACTGCAAACCCACCTTCACCCCAAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179458719 104 - 180051392 AGTCAGTTCCAAATCCCG-CACTCCAAGAACATTTCTCTGGACTGTT---GTATAAATTCTAAGGCGGCATGTCTGAAGCCAAATGCAAACTCACCTCCACCCCAAAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189839 104 - 181584905 AGTCAGTTCCAAATCCCG-CACTCCAAGAACATTTCTCTGGACTGTT---GTATAAATTCTAAGGCGGCATGTCTGAAGCCAAATGCAAACTCACCTCCACCCCAAAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184698 104 -   1764207 AGTCAGTTCCAAATCCCG-CACTCCAAGAACATTTCTCTGGACTTTT---GTATAAATTCTAAGGCGGCATGTCTGAAGCCAAATGCAAACTCACCTCCACCCCAAAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199450 104 -  16742782 AGTCAGTTCCAAATCCCG-CACTCCAAGAACATTTCTCTGGACTGTT---GTATAAATTCTAAGGCGGCATGTCTGAAGCCAAATGCAAACTCACCTCCACCCCAAAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508665 104 -  91010382 AGTCAGTTCCAAATCCCG-CACTCCAAGAACATTTCTCTGGACCGTC---GTATAAATTCTAAGGCGGCAGGTCTGAAGCCAAATGCAAACTCACCTCCACCCCAAAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       81974 104 -    438239 AGTCAGTTCCAAATCCCG-CACTCCAAGAACATTTCTCTGGACTGTT---GTACAAATTCTAAGGCGGCATGTCTGAAGCCAAATGCAAACTCACCTCCACCCCAAAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131342 104 -    514179 AGTCAGTTCCAAATCCCG-CACTCCAGGAATATTTCTCTGGACTGTT---GTATAAATTCTAAGGCGGCATGTCTGAAGCCAAACGCAAACTCACCTCCACCCCAAAG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15943586 101 +  16417988 AGTCAGTTCCAAATCCCA-TTCTCC---AACACTTCTCTGGACTGTT---CCGTACATTCTAATGTAGCATGTCCAAAGGCAACCGCAAACTCACCTTCTCCCCAAGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       20777 104 +    298490 AGTCAGTTTCAAATCCCA-TTCTCCAAGAACACTTCTCTGGACTGTT---CTGTAAATTCTAATGTGTCATGTCCAAAGCCAACCGCAAACTCACCTTCTCCCCAAGC
i cebCap1.NW_016108158v1   C 0 I 79
s aotNan1.NW_018503740v1    25339220 104 -  25620257 AGTCAGTTCCAAATCCCG-TTCTCCAAGAACACTTCTCTGGACTGTT---CTGTAAATTCTAATGCAGCATGTCCAAAGCCAACCGCAAACTCACCTTCTCCCCAAGC
i aotNan1.NW_018503740v1   N 0 C 0
s canFam3.chr34             11676301 105 +  42124431 AGTGAGTTCCAAATCCCC-TACTCTAAGTACACTTCTCTGGACTGTCCCACTATACACTCAGACTCAACACAGTTAAAACCAA-TGCAAACGCA-TTTCTCCCCAAAT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I

a score=106709.000000
s hg38.chr5_KI270793v1_alt      3424 18 +    126136 --CCACCCTCTCCTG--CTGGC
s panPan2.chr5             182990669 18 - 183735486 --CCACCCTTTCCTG--TTGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80914 18 +    698298 --CCACCCTCTCCTG--CTGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505696 18 - 121039945 --CCACCCTCTCCTG--CTGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179458823 18 - 180051392 --CCAGCCTCTCCTG--CTGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189943 18 - 181584905 --CCAGCCTCTCCTG--CTGGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184802 18 -   1764207 --CCAGCCTCTCCTG--CTGGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199554 18 -  16742782 --CCAGCCTCTCCTG--CCTGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508769 18 -  91010382 --CCAGCCTCTCCTG--CTGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82078 18 -    438239 --CCAGCCTCTCCTG--CCTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131446 18 -    514179 --CCACCCTCTCCTG--CCGGC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15943687 18 +  16417988 --TTACCCCCTCCTG--CTGGC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25339324 18 -  25620257 --TCACCCCCTCCTG--CCAGC
i aotNan1.NW_018503740v1   C 0 I 22
s canFam3.chr34             11676406 22 +  42124431 CTATACCCCCTTCTGACTTTGC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       20881 79 +    298490 I
e calJac3.chr2             203781076 2030 + 204313951 I

a score=10160.000000
s hg38.chr5_KI270793v1_alt      3442 4 +    126136 -AAGG
s panPan2.chr5             182990687 4 - 183735486 -ATGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80932 4 +    698298 -ACGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505714 4 - 121039945 -GCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179458841 4 - 180051392 -GCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189961 4 - 181584905 -GCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184820 4 -   1764207 -GCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199572 4 -  16742782 -GCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508787 4 -  91010382 -GCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82096 4 -    438239 -GCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131464 4 -    514179 -GCAG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15943705 4 +  16417988 -GCAG
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11676428 4 +  42124431 AATA-
i canFam3.chr34            C 0 I 1
e aotNan1.NW_018503740v1    25339342 22 -  25620257 I
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       20881 79 +    298490 I
e calJac3.chr2             203781076 2030 + 204313951 I

a score=102838.000000
s hg38.chr5_KI270793v1_alt      3446 16 +    126136 TCTC----TCCAGACGCCGC
s panPan2.chr5             182990691 16 - 183735486 TCTC----TCCAGACGCCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80936 16 +    698298 TCTC----TCCAGACGCCGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505718 16 - 121039945 TCTC----CCCAGACGCCAC
i nomLeu3.chr6             C 0 I 105
s rheMac8.chr6             179458845 16 - 180051392 TCTC----CCCAAATGCTGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189965 16 - 181584905 TCTC----CCCAAACGCTGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184824 16 -   1764207 TCTC----CCCAAACGCTGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199576 16 -  16742782 TCTC----CCCAAACGCTGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508791 16 -  91010382 TCTC----CCCAAACGCTGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82100 16 -    438239 TCTC----CCCAAACGCTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131468 16 -    514179 TCTC----CCCAAACACTGC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15943709 16 +  16417988 TCTC----CCCAAACGCTGA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25339364 16 -  25620257 TCTC----CCCAAACGCTGG
i aotNan1.NW_018503740v1   I 22 C 0
s canFam3.chr34             11676433 20 +  42124431 TCTCCTCTCCCAGACCCCAC
i canFam3.chr34            I 1 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       20881 79 +    298490 I
e calJac3.chr2             203781076 2030 + 204313951 I

a score=23459.000000
s hg38.chr5_KI270793v1_alt      3462 6 +    126136 --CTCCAT
s panPan2.chr5             182990707 6 - 183735486 --CTCCAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80952 6 +    698298 --CTCCAT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179458861 6 - 180051392 --CTCCAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189981 6 - 181584905 --CTCCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184840 6 -   1764207 --CTCCAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199592 6 -  16742782 --CTCCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508807 6 -  91010382 --CTCCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82116 6 -    438239 --CTCCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131484 6 -    514179 --CTCCAC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15943725 6 +  16417988 --CTTCTC
i saiBol1.JH378155         C 0 I 18
s aotNan1.NW_018503740v1    25339380 6 -  25620257 --TTTCAC
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11676453 5 +  42124431 AGCCC---
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       20881 79 +    298490 I
e calJac3.chr2             203781076 2030 + 204313951 I
e nomLeu3.chr6             120505734 105 - 121039945 I

a score=661310.000000
s hg38.chr5_KI270793v1_alt      3468 117 +    126136 CCCACACGCAGGCCCTTGCTATCTGCCTCCTCCACCACCGGGGCCTTTCCATGACCCACGCGGAGCCAAGGACCGAGCCCACTCCAGGAGGCACCACGC-----------------------------------------------------------------------------------------------AGGGCAGCAGGCCGTCCC
s panPan2.chr5             182990713 117 - 183735486 CCCACACGCAGGCCCTTGCTATCTGCCTCCTCCACCACCGGGGCCTTTCCATGACCCACGCGGAGCCAAGGACCGAGCCCACTCCGGGAGGCACCACGC-----------------------------------------------------------------------------------------------GGGGCAGCAGGCCGTCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       80958 117 +    698298 CCCACACGCAGGCCCTTGCTATCTGCCTCCTCCACCACCAGGGCCTTTCCATGACCCACGCGGAGCCAAGGACCGAGCCCACTCCGGGAGGCACCACGC-----------------------------------------------------------------------------------------------AGGGCAGCAGGCCATCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179458867 116 - 180051392 CTCACACACAGGCCCTTGCTATCTGCCTCCTCCACCACCAGGGCCTTTCCATGACCCATGTGGAGCCAAGGACTGGGCCCCCTCCGGGAGGCACCATGC------------------------------------------------------------------------------------------------GGGCGGGAGGCCGTCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181189987 116 - 181584905 CTCACACACAGGCCCTTGCTATCTGCCTCCTCCACCACCAGGGCCTTTCCATGACCCATGTGGAGCCAAGGACTGAGCCCCCTCCGGGAGGCACCATGC------------------------------------------------------------------------------------------------GGGCGGGAGGCCGTCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184846 116 -   1764207 CTCACACACAGGCCCTTGCTATCTGCCTCCTCCACCACCAGGGCCTTTCCATGACCCATGTGGAGCCAAGGACTGAGCCCCCTCCGGGAGGCACCATGC------------------------------------------------------------------------------------------------GGGCGGGAGGCCGTCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199598 117 -  16742782 CTCACACGCAGGCCCCTGCTATCTGCCTCCTCCACCACCAGGGCCTTTCCATGACCCACATGGAGCCAAGGACTGAGCCCCCTCCGGGAGGCACCATGC-----------------------------------------------------------------------------------------------GGGGCGGGAGGCCGTCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508813 117 -  91010382 CTCACACGCAGGCCCCTGCTATCTGCCTCCTCCACCACCAGGGCCTTTCCATGACCCACAAGGAGCCAAGGACTGAGCCCCCTCCGGGAGGCACCATGT-----------------------------------------------------------------------------------------------GGGGCGGGAGGCCGTCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82122 117 -    438239 CTCACACGCAGGCCCCTGCTATCTGCCTCCTCCACCACCAGGGCCTTTCCATGACCCACGTGGAGCCAAGGACTGAGCCCCCTCCGGGAGGCACCATGC-----------------------------------------------------------------------------------------------GGGGCGGGAGGCCGTCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131490 212 -    514179 CCCACACGCAGGCCCTTGCTATCTGCCTCCTCCACCACCAGGGGCTTTCCATGACCCACGTGGAGCCAAGGACCAAGCCCCCTCCGGGAGGCACCGTGCGGGGAGGGAGGCACCTTGCGGGGAGGGAGGCACCATGTGGGGAGGGAAGCACCATGCAGGGAGGGAGACACCGTGCGGGGCGGGAGGCACCACGCGGGGCAGCAGGCCGTCCC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15943749 114 +  16417988 CCCACACGCAGGCCCTTGCTATCTGCCTCCTCCACCACCAAGGCCTTTCCATGACCCAAGCACAGCCGAGGACTGAGCCC-CTCC-GGAGGCAGCACTC------------------------------------------------------------------------------------------------GGGCAGCGGGCCGTCCC
i saiBol1.JH378155         I 18 I 1
s cebCap1.NW_016108158v1       20960 115 +    298490 CCCACACACAGGCCCTTGCTATCTGCCTCCTCCACCACCAAGGCCTTTCCATGACCCAAGCATAGCCGAGGACTGAGCCC-CTCCGGGAGGCACCATTC------------------------------------------------------------------------------------------------AGGCAGCAGGCCATCCC
i cebCap1.NW_016108158v1   I 79 I 59
s aotNan1.NW_018503740v1    25339386 115 -  25620257 CCCACATGCAGGCCCTTGCTATCTGCCTCCTCCACCACCAAGGCCTTTCCATGACCCACGCATAGCCGAGGACTGAGCCC-CTCCGGGAGGCACCATTC------------------------------------------------------------------------------------------------AGGCAGCAGGCCATCCC
i aotNan1.NW_018503740v1   C 0 I 57
s canFam3.chr34             11676458  55 +  42124431 CCAGCACTGAGTCCCC----ATATGCTCCCCTC---------GCTGTTCTTCTGTCCACA------------------CTCCTCCA------------------------------------------------------------------------------------------------------------------------------
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e nomLeu3.chr6             120505734 105 - 121039945 I

a score=49313.000000
s hg38.chr5_KI270793v1_alt      3585 11 +    126136 GGGGCCCCGCA
s panPan2.chr5             182990830 11 - 183735486 GGGGCCCCGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81075 11 +    698298 GGGGCCCCGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179458983 11 - 180051392 CGGGCCCAGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181190103 11 - 181584905 CGGGCCCAGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184962 11 -   1764207 CGGGCCCAGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199715 11 -  16742782 GGGGCCCAGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508930 11 -  91010382 GGGGCCCAGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82239 11 -    438239 GGGGCCCAGCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131702 11 -    514179 GGGGCCCAGCA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15943864 11 +  16417988 GGGACCCAGCA
i saiBol1.JH378155         I 1 I 114
s canFam3.chr34             11676513 11 +  42124431 GGGGCTCTCAA
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25339501 57 -  25620257 I
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       21075 59 +    298490 I
e calJac3.chr2             203781076 2030 + 204313951 I
e nomLeu3.chr6             120505734 105 - 121039945 I

a score=106148.000000
s hg38.chr5_KI270793v1_alt      3596 27 +    126136 ----CCTCCGTGGTTCCCGCAGCGCCTCTGA
s panPan2.chr5             182990841 27 - 183735486 ----CCTCCGTGGTTCCTGCAGCGCCTCTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81086 27 +    698298 ----CCTCCGTGGTTCCCGCAGCGCCTCTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179458994 26 - 180051392 ----CCTCCG-GGTTCCCGCAGCGCCTCTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181190114 26 - 181584905 ----CCTCCG-GGTTCCCGCAGCGCCTCTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184973 26 -   1764207 ----CCTCTG-GGTTCCCGCAGCGCCTCTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199726 26 -  16742782 ----CCTCCG-GGTTCCCGCAGCGCCTCTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508941 26 -  91010382 ----CCTCCG-GGTTCCCGCAGCGCCTCTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82250 26 -    438239 ----CCTCCG-GGTTCCCGCAGCGCCTCTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131713 26 -    514179 ----CCTCCG-GCTTCCCGCAGCGCCTCTGA
i colAng1.NW_012118799v1   C 0 C 0
s canFam3.chr34             11676524 30 +  42124431 CTTCTCACCT-GGAACCCGTGATGGCTCTGA
i canFam3.chr34            C 0 I 110
e aotNan1.NW_018503740v1    25339501 57 -  25620257 I
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       21075 59 +    298490 I
e saiBol1.JH378155          15943875 114 +  16417988 I
e calJac3.chr2             203781076 2030 + 204313951 I
e nomLeu3.chr6             120505734 105 - 121039945 I

a score=148213.000000
s hg38.chr5_KI270793v1_alt      3623 40 +    126136 CTGCCAGCGCCACTGCAGGAAGCATCTCTCACATGCGGGG
s panPan2.chr5             182990868 40 - 183735486 CTGCCAGCGCCACTGCTGGAAGCATCTCTCACATGCGGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81113 40 +    698298 CTGCCAGCGCCACTGCTGGAAGCATCTCTCACACACGGAG
i gorGor5.CYUI01015805v1   C 0 I 39
s rheMac8.chr6             179459020 40 - 180051392 CTGCCAGCGCCACTGCTGGAAGCATCTGTCGTGTGCAGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181190140 40 - 181584905 CTGCCAGCGCCACTGCTGGAAGCATCTGTCGTGTGCAGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      184999 40 -   1764207 CTGCCAGTGCCACTGCTGGAAGCATCTGTCGTGTGCAGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199752 40 -  16742782 CTGCCAGCGCCACTGCTGGAAGCATCTGTCATGTGCAGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90508967 40 -  91010382 CTGCCAGCGCCACTGCTGGAAGCATCTGTCGTGTGCAGGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82276 40 -    438239 CTGCCAGCGCCACTGCTGGAAGCATCTGTCGTGTGCAGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131739 40 -    514179 CTGCCAGCGCCACTGCTGGAAGCATCTGTCACGTGCGGGA
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25339501 57 -  25620257 I
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       21075 59 +    298490 I
e saiBol1.JH378155          15943875 114 +  16417988 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11676554 110 +  42124431 I
e nomLeu3.chr6             120505734 105 - 121039945 I

a score=106390.000000
s hg38.chr5_KI270793v1_alt      3663 23 +    126136 AGACGGTTGTGCTCCTTCTCTGT
s panTro5.chr5             181269393 23 - 181907262 AGACGGTTGCGCTCCTTCTCTGC
i panTro5.chr5             N 0 C 0
s panPan2.chr5             182990908 23 - 183735486 AGACGGTTGTGCTCCTTCTCTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81192 23 +    698298 AGACGGCTGCGCTCCTTCTCTGT
i gorGor5.CYUI01015805v1   I 39 C 0
s rheMac8.chr6             179459060 23 - 180051392 AGACTGTTGTGTTCCTTCTCTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181190180 23 - 181584905 AGACTGTTGTGTTCCTTCTCTGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      185039 23 -   1764207 AGACTGTTGTGTTCCTTCTCTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199792 23 -  16742782 AGACTGTTGTGTTCCTTCTCTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90509007 23 -  91010382 AGACTGTTGTGTTCCTTCTCTGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82316 23 -    438239 AGACTGTTGTGTTCCTTCTCTGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131779 23 -    514179 AGACTGTTGTGTTCCTTCTCTGT
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25339501 57 -  25620257 I
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       21075 59 +    298490 I
e saiBol1.JH378155          15943875 114 +  16417988 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11676554 110 +  42124431 I
e nomLeu3.chr6             120505734 105 - 121039945 I

a score=43663.000000
s hg38.chr5_KI270793v1_alt      3686 111 +    126136 AGAAACACTAAGAGGGGAGACGGTCGCGCTCCTTCTCTGCAGAAACACTAAGAGGGAGACGGCTGCGCTCCTTCTCTGCAGAAAC-------------------------TCTCTGCAGAAACACTAAGAGGG-AGA
s panTro5.chr5             181269416  98 - 181907262 AGAAACACTAAGAGGG-AGACGGTTGTGCTCCTTCTCTGCAGAAACACTAAGAGGGAGATGGTTGCGCTCCTTCTCTGTAGAAAC--------------------------------------ACTAAGAGGGGAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182990931  99 - 183735486 AGAAACGCTAAGAGGGAAGACGGTTGCGCTCCTTCTCTGTAGAAACACTAAGAGGGAGACGGTTGCGCTCCTTCTCTGTAGAAAC--------------------------------------ACTAAGAGGGAAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81215 136 +    698298 AGAAACACTAAGAGGGAAGACGGTCGCGCTCCTCCTCTGTAGAAACACTAAGGGGGAGACGGCTGCGCTCCTCCTCTGTAGAAACACTAAGAGGAGACGGTCGCGCTCCTCCTCTGTAGAAACACTAAGAGGG-AGA
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25339501  57 -  25620257 I
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       21075  59 +    298490 I
e saiBol1.JH378155          15943875 114 +  16417988 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11676554 110 +  42124431 I
e nomLeu3.chr6             120505734 105 - 121039945 I
e manLeu1.NW_012110441v1       82339   0 -    438239 C
e chlSab2.chr4              90509030   0 -  91010382 C
e cerAty1.NW_012009470v1      199815   0 -  16742782 C
e colAng1.NW_012118799v1      131802   0 -    514179 C
e macNem1.NW_012012389v1      185062   0 -   1764207 C
e macFas5.chr6             181190203   0 - 181584905 C
e rheMac8.chr6             179459083   0 - 180051392 C

a score=34312.000000
s hg38.chr5_KI270793v1_alt      3797 72 +    126136 CGGTCGCGCTCCTTCTCTGCAGAAACACTAAGAGGGAGACGGCCGCGCTCCTTCTCTACAGAAACACTAAGA
s panTro5.chr5             181269514 72 - 181907262 CAGTTGCGCTCCTTCTCTGCAGAAACACTAAGAGGGAGACGGTTGCGCTCCTTCTCTGCAGAAACACTAAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991030 72 - 183735486 CGGCTGCACTCCTTCTCTGTAGAAACACTAAGAGGGAGACGGTTGCGCTCCTTCTCTGCAGAAACACTAAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81351 72 +    698298 TGGTCGCGCTCCTCCTCTGTAGAAACACTAAGAGGGAGACGGCTGCGCTCCTCCTCTGTAGAAACACTAAGG
i gorGor5.CYUI01015805v1   C 0 I 233
s canFam3.chr34             11676664 38 +  42124431 CAATTGTGTTCCTTTT------GCACACCTAAAGGTA-----------TCCTTCT-----------------
i canFam3.chr34            I 110 C 0
e aotNan1.NW_018503740v1    25339501 57 -  25620257 I
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       21075 59 +    298490 I
e saiBol1.JH378155          15943875 114 +  16417988 I
e calJac3.chr2             203781076 2030 + 204313951 I
e nomLeu3.chr6             120505734 105 - 121039945 I
e manLeu1.NW_012110441v1       82339  0 -    438239 C
e chlSab2.chr4              90509030  0 -  91010382 C
e cerAty1.NW_012009470v1      199815  0 -  16742782 C
e colAng1.NW_012118799v1      131802  0 -    514179 C
e macNem1.NW_012012389v1      185062  0 -   1764207 C
e macFas5.chr6             181190203  0 - 181584905 C
e rheMac8.chr6             179459083  0 - 180051392 C

a score=600.000000
s hg38.chr5_KI270793v1_alt      3869 1 +    126136 G
s panTro5.chr5             181269586 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991102 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s saiBol1.JH378155          15943989 1 +  16417988 G
i saiBol1.JH378155         I 114 C 0
e aotNan1.NW_018503740v1    25339501 57 -  25620257 I
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       21075 59 +    298490 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11676702 0 +  42124431 C
e nomLeu3.chr6             120505734 105 - 121039945 I
e manLeu1.NW_012110441v1       82339 0 -    438239 C
e chlSab2.chr4              90509030 0 -  91010382 C
e cerAty1.NW_012009470v1      199815 0 -  16742782 C
e colAng1.NW_012118799v1      131802 0 -    514179 C
e macNem1.NW_012012389v1      185062 0 -   1764207 C
e macFas5.chr6             181190203 0 - 181584905 C
e rheMac8.chr6             179459083 0 - 180051392 C
e gorGor5.CYUI01015805v1       81423 233 +    698298 I

a score=9169.000000
s hg38.chr5_KI270793v1_alt      3870 15 +    126136 GGGAGACGGCTGCGC
s panTro5.chr5             181269587 15 - 181907262 GGAAGACGGCTGCGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991103 15 - 183735486 GGAAGACGGCTGCGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81656 15 +    698298 GGGAGACGGCTGCGC
i gorGor5.CYUI01015805v1   I 233 C 0
s saiBol1.JH378155          15943990 15 +  16417988 GGAAGACCCTCACGT
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11676702  5 +  42124431 ----------TATGT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25339501 57 -  25620257 I
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       21075 59 +    298490 I
e calJac3.chr2             203781076 2030 + 204313951 I
e nomLeu3.chr6             120505734 105 - 121039945 I
e manLeu1.NW_012110441v1       82339  0 -    438239 C
e chlSab2.chr4              90509030  0 -  91010382 C
e cerAty1.NW_012009470v1      199815  0 -  16742782 C
e colAng1.NW_012118799v1      131802  0 -    514179 C
e macNem1.NW_012012389v1      185062  0 -   1764207 C
e macFas5.chr6             181190203  0 - 181584905 C
e rheMac8.chr6             179459083  0 - 180051392 C

a score=3279.000000
s hg38.chr5_KI270793v1_alt      3885 2 +    126136 TC
s panTro5.chr5             181269602 2 - 181907262 TC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991118 2 - 183735486 TC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81671 2 +    698298 TC
i gorGor5.CYUI01015805v1   C 0 C 0
s saiBol1.JH378155          15944005 2 +  16417988 TC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25339558 2 -  25620257 TC
i aotNan1.NW_018503740v1   I 57 C 0
s canFam3.chr34             11676707 2 +  42124431 CC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       21075 59 +    298490 I
e calJac3.chr2             203781076 2030 + 204313951 I
e nomLeu3.chr6             120505734 105 - 121039945 I
e manLeu1.NW_012110441v1       82339 0 -    438239 C
e chlSab2.chr4              90509030 0 -  91010382 C
e cerAty1.NW_012009470v1      199815 0 -  16742782 C
e colAng1.NW_012118799v1      131802 0 -    514179 C
e macNem1.NW_012012389v1      185062 0 -   1764207 C
e macFas5.chr6             181190203 0 - 181584905 C
e rheMac8.chr6             179459083 0 - 180051392 C

a score=18943.000000
s hg38.chr5_KI270793v1_alt      3887 9 +    126136 CTTCTCTGC
s panTro5.chr5             181269604 9 - 181907262 CTTCTCTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991120 9 - 183735486 CTTCTCTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81673 9 +    698298 CTCCTCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s saiBol1.JH378155          15944007 9 +  16417988 CTTCTCTGT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       21134 9 +    298490 CTTCTCTGT
i cebCap1.NW_016108158v1   I 59 C 0
s aotNan1.NW_018503740v1    25339560 9 -  25620257 CTTTTCTGT
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11676709 9 +  42124431 CTTCTCCAC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e nomLeu3.chr6             120505734 105 - 121039945 I
e manLeu1.NW_012110441v1       82339 0 -    438239 C
e chlSab2.chr4              90509030 0 -  91010382 C
e cerAty1.NW_012009470v1      199815 0 -  16742782 C
e colAng1.NW_012118799v1      131802 0 -    514179 C
e macNem1.NW_012012389v1      185062 0 -   1764207 C
e macFas5.chr6             181190203 0 - 181584905 C
e rheMac8.chr6             179459083 0 - 180051392 C

a score=164929.000000
s hg38.chr5_KI270793v1_alt      3896 19 +    126136 AGAAACAC--TAAGATTCTGA
s panTro5.chr5             181269613 19 - 181907262 AGAAACAC--TAAGATTCTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991129 19 - 183735486 AGAAACAC--TAAGATTCTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81682 19 +    698298 AGAAACAC--TAAGATACTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179459083 19 - 180051392 AGAAACAC--TAAGATTCTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181190203 19 - 181584905 AGAAACAC--TAAGATTCTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      185062 19 -   1764207 AGAAACAC--TAAGATTCTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199815 19 -  16742782 AGAAACAC--TAAGATTCTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90509030 19 -  91010382 AGAAACAC--TAAGATTCTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82339 19 -    438239 AGAAACAC--TAAGATTCTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131802 19 -    514179 AGAAACAC--TAAGATTCTGA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15944016 19 +  16417988 AGAAACAC--CAAGATTCTGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       21143 19 +    298490 AGAAACAG--TAAGATTCTCA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25339569 19 -  25620257 AAAAACAC--TAAGATTCTGA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11676718 21 +  42124431 ACAAACACTGTAAGATTCTGA
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e nomLeu3.chr6             120505734 105 - 121039945 I

a score=1193346.000000
s hg38.chr5_KI270793v1_alt      3915 143 +    126136 ATCTAAAACTTGGATTACAGAGG-----CAATGATTTAGAACTGAAGACTCCAAAAATTACCTAGAATAAGGAC---TGTAGCTCCTGAAAC--AGCCAAACTCAACTGTTTATGAGTTACTTGGTTAATTGGCCAAATAAACACTATAAAAC--
s panTro5.chr5             181269632 143 - 181907262 ATCTAAAACTTGGATTACAGAGG-----CAATGATTTAGAACTGAAGACTCCAAAAATTACCCAGAATAAGGAC---TGTAGCTTCTGAAAC--AGCCAAACTCAACTGTTTATGAGTTACTTGGTTAATCGGCCAAATAAACACTACAAAAC--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991148 143 - 183735486 ATCTAAAACTTGGATTACAGAGG-----CAATGATTTAGAACTGAAGACTCCAAAAATTACCCAGAATAAGGAC---TGTAGCTTCTGAAAC--AGCCAAACTCAACTGTTTATGAGTTACTTGGTTAATCGGCCAAATAAACACTACAAAAC--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81701 143 +    698298 ATCTAAAACTTGGATTACAGAGG-----CAATGATTTAGAACTGAAGACTCCAAAAATTACCTAGAATAAGGAC---TGTAGCTCCTGAAAC--AGCCAAACTCCACTGTTTATGAGTTACTTGGTTAATCGGCCAAATAAACACTACAAAAC--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505839 143 - 121039945 ATCTAAAACTTGGATGACAGAGG-----CAATGATTTAGAACTGAAGATTCCAAAAATTATCCAGAATAAGGAC---TGTAGCTCCTGAAAC--AGCCAAACTCAACTGTTTATGAGTTACTTGGTTAATCAGCCAAATAAACGCTACAAACC--
i nomLeu3.chr6             I 105 C 0
s rheMac8.chr6             179459102 143 - 180051392 ATCTAAAACCTGGATGACAGAGG-----CGATGATTTAGAACTGAAGATTCCAAAATTTACCCCGAGTAAGGAC---AGCAGCTTCTGAAAC--AGACAAACTCAAGTGTTTATGAGTCACTTGGTTAATCAGCCAAATAAATGCCACAAAAC--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181190222 143 - 181584905 ATCTAAAACCTGGATGACAGAGG-----CGATGATTTAGAACTGAAGATTCCAAAATTTACCCCGAGTAAGGAC---AGCAGCTTCTGAAAC--AGACAAACTCAAGTGTTTATGAGTCACTTGGTTAATCAGCCAAATAAATGCCACAAAAC--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      185081 143 -   1764207 ATCTAAAACCTGGATGACAGAGG-----CGATGATTTAGAACTGAAGATTCCAAAATTTACCCCGAGTAAGGAC---AGCAGCTTCTGAAAC--AGACAAACTCAAGTGTTTATGAGTCACTTGGTTAATCAGCCAAATAAATGCCACAAAAC--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      199834 143 -  16742782 ATCTAAAACCTGGATGACAGAGG-----CGATGATTTAGAACTGAAGATTCCAAAAATTACCCAGAGTAAGGAC---AGCAGCTTCTGAAAC--AGCCAAACTCAAGTATTTATGAGTCACTTGGTTAATCAGCCAAATAATCGCCACAAAAC--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90509049 143 -  91010382 ATCTAAAACCTGGATGACAGAGG-----CGATGATTTAGAACTGAAGATTCCAAAAATTACCCAGAGTAAGGAC---AGCAGCTTCTGAAAC--AGCCAGACTCAAGTGTTTATGAGTCACTTGGTTAATCAGCCAAATAAACGCCACAAAAC--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82358 143 -    438239 ATCTAAAACCTGGATGACAGAGG-----CGATGATTTAGAACTGAAGATTCCAAAAATTACCCAGAGTAAGGAC---AGCAGCTTCTGAAAC--AGCCAAACTCAAGTGTTTATGAGTCACTTGGTTAATCGGCCAAATAAACGCCACAAAAC--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      131821 143 -    514179 ATCTAAAACCTGGATGACAGAGG-----CGATGATTTCGAATTGAAGATTCCAAAAATCATCCAGAGTAAGGAC---AGCAGCTTTTGAAAC--AGCCAAACTCAAGTGTTTATGAGTCACTTGGTTAACCAGCCAAATAACCACCACAAAAC--
i colAng1.NW_012118799v1   C 0 I 98
s saiBol1.JH378155          15944035 139 +  16417988 GTCTAAAACCTGGATGACAGAGG-----TGATGATTTAGAATTGAAGATTCCAAAAATTACCCAT------GAC---TGCAGCTTCTGAAACAGAGCCAGACTCAACAGTTGAGGAGTTATTTGGCTGACCAGCCACAAAACCGATACAAAAC--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       21162 145 +    298490 ATCTAAAACCTGGATGACAGAGG-----TGATGATTTAGAACTGAAGATTCCAAAAATTACCCATAATAAGGAC---TGCAGCTTCTGAAACAGAGCCAAACTCAACTGTTTAGGAGTTATTTGGCTAACTAGCCAAATAAACATTACAAAAC--
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25339588 145 -  25620257 ATCTAAAATTTGGATGACAGAGG-----TGACGATTTAGACCTGAAGATTCCAAAAATTACCCATAATAAGGAC---TGCAGCTTCTGAAACAGAGCCCAACTCAACTGTTAAGGAGTTATTTGGCTAACCAGCCAAATAAACATTACAAAAC--
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11676739 144 +  42124431 ATCTAAAACTTTTAAAACAAAGGTAAAATAATGATTTAGGATTGGAAATGGCAAGATTTTCCCATAATATGGACTAATAATGCTTCTGAAAAAGAACCAGATTCAACTATTCATAACT--------TAAACAGTCAAAGAAG---TTAAGAACAT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I

a score=42831.000000
s hg38.chr5_KI270793v1_alt      4058 6 +    126136 -AGGCGC
s panTro5.chr5             181269775 6 - 181907262 -AGGCGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991291 6 - 183735486 -AGGCGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81844 6 +    698298 -AGGCGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505982 6 - 121039945 -AGGCGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179459245 6 - 180051392 -AGGCGC
i rheMac8.chr6             C 0 I 156
s macFas5.chr6             181190365 6 - 181584905 -AGGCGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      185224 6 -   1764207 -AGGCGC
i macNem1.NW_012012389v1   C 0 I 156
s cerAty1.NW_012009470v1      199977 6 -  16742782 -AGGCGC
i cerAty1.NW_012009470v1   C 0 I 114
s chlSab2.chr4              90509192 6 -  91010382 -AGACGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82501 6 -    438239 -AGGTGC
i manLeu1.NW_012110441v1   C 0 C 0
s saiBol1.JH378155          15944174 6 +  16417988 -AGGCGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       21307 6 +    298490 -AGGCGC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25339733 6 -  25620257 -AGGCAC
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11676883 6 +  42124431 CAGCCT-
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e colAng1.NW_012118799v1      131964 98 -    514179 I

a score=8162.000000
s hg38.chr5_KI270793v1_alt      4064 2 +    126136 CT
s panTro5.chr5             181269781 2 - 181907262 CT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991297 2 - 183735486 CT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81850 2 +    698298 CT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505988 2 - 121039945 TT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181190371 2 - 181584905 TT
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90509198 2 -  91010382 TT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82507 2 -    438239 TT
i manLeu1.NW_012110441v1   C 0 I 51
s saiBol1.JH378155          15944180 2 +  16417988 TT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       21313 2 +    298490 TT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25339739 2 -  25620257 TT
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11676889 2 +  42124431 TT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e cerAty1.NW_012009470v1      199983 114 -  16742782 I
e colAng1.NW_012118799v1      131964 98 -    514179 I
e macNem1.NW_012012389v1      185230 156 -   1764207 I
e rheMac8.chr6             179459251 156 - 180051392 I

a score=30137.000000
s hg38.chr5_KI270793v1_alt      4066 11 +    126136 ATTCCTCCCAA
s panTro5.chr5             181269783 11 - 181907262 ATTCCTCCCAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991299 11 - 183735486 ATTCCTCCCAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81852 11 +    698298 ATTCCTCCCAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120505990 11 - 121039945 ATTCCTCCCAA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181190373  9 - 181584905 -TTCCCCCCA-
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90509200 10 -  91010382 -TTCCCCCCAA
i chlSab2.chr4             C 0 I 42
s saiBol1.JH378155          15944182 11 +  16417988 CTGCCTCGAAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       21315 11 +    298490 ATTCCTCGAAA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25339741 11 -  25620257 ATTCCTTGAAA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11676891 11 +  42124431 ACTCCTCCTAA
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e manLeu1.NW_012110441v1       82509 51 -    438239 I
e cerAty1.NW_012009470v1      199983 114 -  16742782 I
e colAng1.NW_012118799v1      131964 98 -    514179 I
e macNem1.NW_012012389v1      185230 156 -   1764207 I
e rheMac8.chr6             179459251 156 - 180051392 I

a score=5797.000000
s hg38.chr5_KI270793v1_alt      4077 2 +    126136 AC
s panTro5.chr5             181269794 2 - 181907262 AC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991310 2 - 183735486 AC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81863 2 +    698298 AC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120506001 2 - 121039945 AC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181190382 2 - 181584905 AC
i macFas5.chr6             C 0 I 136
s chlSab2.chr4              90509252 2 -  91010382 GT
i chlSab2.chr4             I 42 C 0
s manLeu1.NW_012110441v1       82560 2 -    438239 GC
i manLeu1.NW_012110441v1   I 51 C 0
s saiBol1.JH378155          15944193 2 +  16417988 GC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       21326 2 +    298490 GC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25339752 2 -  25620257 GC
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11676902 2 +  42124431 AT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e cerAty1.NW_012009470v1      199983 114 -  16742782 I
e colAng1.NW_012118799v1      131964 98 -    514179 I
e macNem1.NW_012012389v1      185230 156 -   1764207 I
e rheMac8.chr6             179459251 156 - 180051392 I

a score=21457.000000
s hg38.chr5_KI270793v1_alt      4079  7 +    126136 CTCTTAT-------
s panTro5.chr5             181269796  7 - 181907262 CTCTTAT-------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991312  7 - 183735486 CTCTTAT-------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81865  7 +    698298 CTCTTAT-------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120506003  7 - 121039945 CTCTTAC-------
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181190520  7 - 181584905 CTCTCAC-------
i macFas5.chr6             I 136 C 0
s chlSab2.chr4              90509254  7 -  91010382 CTCTCAC-------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82562  7 -    438239 CTCTCAC-------
i manLeu1.NW_012110441v1   C 0 C 0
s saiBol1.JH378155          15944195  7 +  16417988 CTCTTAT-------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       21328  7 +    298490 CTCCTAT-------
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25339754  7 -  25620257 CTCTTAT-------
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11676904 13 +  42124431 -GCCTAAAAATTAA
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e cerAty1.NW_012009470v1      199983 114 -  16742782 I
e colAng1.NW_012118799v1      131964 98 -    514179 I
e macNem1.NW_012012389v1      185230 156 -   1764207 I
e rheMac8.chr6             179459251 156 - 180051392 I

a score=2895015.000000
s hg38.chr5_KI270793v1_alt      4086 371 +    126136 AATTAAACAGCGAAATCCTAATTGGGTTTGGAAACAGACACTGTGTC--TTGGGGGG-GTCCATTGTTAATGTCCACGGCCCC------------ATCCCAGGGGGAAGAGTGTCAGGCACAGCAGCCAGGCTCTCAGGTGGCCAGCA--CCACGCATGCA-----------------------------CGCCGCATGCTC--CCAAGGAGGCGCTC-----------------CTCGCTGCCAAGAGCTGCAGCACA--GAGCTCTATCCACACTGCTCAGGCTCTGGAAGCCCAGCCG-CAGGGCCTGTCCAGGGCCCAGCACTTGCCACATGAGTGGGTGAGCCAGGGTCTTCCCTGTC-AGTGATGCTGGGAGCTAGGTCTCACTTTGGCCACA-----CAGACGCCCTGA--GTGCCTCCCAGCCCTTGCAGAGCAGCAAA
s panTro5.chr5             181269803 370 - 181907262 AATTAAACAGCGAAATCCTAATTGGGTTTGGAAACAGACACTGTGTC--TTGGGGGG--TCCATTGTTAATGTCCATGGCCCC------------ATCCCAGGGGGAAGAGTGTCAGGCACAGCAGCCAGGCTCTCAGGTGGCCAGCA--CCACGCATGCA-----------------------------CACCACATGCTC--CCAAGGAGGCGCTC-----------------CTCGCTGCCAAGAGCTGCAGCACA--GAGCTCTATCCACACTGCTCAGGCTCTGGAAGGCCAGCCG-CAGGGCCTGTCCAGGGCCCAGCACTTGCCACATGAGTGGGTGAGCCAGGGTCTTCCCTGTC-AGTGATGCTGGGAGCTAGGTCTCACTTTGGCCACA-----CAGACGCCCTGA--GCGCCTCCCAGCCCTTGCAGAGCAGCAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991319 370 - 183735486 AATTAAACAGTGAAATCCTAATTGGGTTTGGAAACAGACACTGTGTC--TTGGGGGG--TCCATTGTTAATGTCCATGGCCCC------------ATCCCAGGGGGAAGAGTGTCAGGCACAGCAGCCAGGCTCTCAGGTGGCCAGCA--CCACGCATGCA-----------------------------CACCACATGCTC--CCAAGGAGGCGCTC-----------------CTCGCTGCCAAGAGCTGCAGCACA--GAGCTCTATCCACACTGCTCAGGCTCTGGAAGGCCAGCCG-CAGGGCCTGTCCAGGGCCCAGCACTTGCCACATGAGTGGGTGAGCCAGGGTCTTCCCTGTC-AGTGATGCTGGGAGCTAGGTCTCACTTTGGCCACA-----CAGACGCCCTGA--GCGCCTCCCAGCCCTTGCAGAGCAGCAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       81872 369 +    698298 AATTAAACAGCGAAATCCTAATTGGGTTTGGAAACAGACACTGTGTC--TTGGGGGG--TCCATTGTTAATGTCCACAGCCCC------------ATCCCA-GGGGAAGAGTGTCAGGCACAGCAGCCAGGCTCTCAGGTGGCCAGCA--CCACGCATGCA-----------------------------CGCCGCATGCTC--CCAAGGAGGCGCTC-----------------CTCGCTGCCAAGAGCTGCAGCACA--GAGCTCTATCCACACTGCTCAGGCTCTGGAAGCCCAGCTG-CAGGGCCTGTCCAGGGCCCAGCACTTGCCACATGAGTGAGTGAGCCAGGGTCTTCCCTGTC-AGTGATGCTGGGAGCTAGGTCTCACTTTGGCCACA-----CAGACGCCCTGA--GCGCCTCCCAGCCCTTGCAGAGCAGCAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120506010 372 - 121039945 AATTAAACAGCAAAATCCTAATTGGGTTTGGAAACAGACAGTGTGTC--TTGGGGGGAGTCCACTGTTAATACCCACGGCCCC------------ATCCCAGGGGACAGAGCGTCAGGCAGCGCAGCCAGGCTCTCAGGTGGCCAGCA--CCACGCATGCA-----------------------------CGCCGCATGCTC--CCAAGGAGGCGCTC-----------------CTTGCTGCCAAGAGCTGCAGCACA--GAACTCTATCCACACTGCTCAGGCTCTGGAAGGCCAGCAG-CAGGGCCTGTCCAGGGCCCAGCACTTGCCACATGAGCGGGTGAGCCAGGGTCTTCCCTGAC-AGTGATGTTGGGAGCTAGGTCTCACTTTGGCCACA-----CAGACACCCTGA--GCGCCTCCCAGCCCTTGCAGAGCAGCAAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179459407 366 - 180051392 AATTCAACAGTGAAATCCTCATTGGGTTTGGAAACAGACACTGTGTC--TCGGGGGG--TCCACTGTGAATG-CCACGGCCCC------------GTCCCAGTCGGAAGAGTGTCAGGCAGCACAGCCAGGCTCTCAGGC-GCCCGCA--CCACGCATG-------------------------------CACCACACGCTC--CCAAGGACGTGCTC-----------------CTGGCTGCCAAGAGCTGCAGCACA--GAGCTCTATCCACACTGCTCAGGCTTTGGAAGGCCAGCAG-CAGGGCCTGTCCAGGGCCCAGCACTTGCCACATGAGCGGGTGAGCCAGGGTCTTCCCTGAC-AGTGATGCTGGGAGCTAGGTCTCACTTTGGCCACA-----GAGACGCCCTGA--GCGCCTCCCAGCCTTTGCAGAGCAGCAAA
i rheMac8.chr6             I 156 C 0
s macFas5.chr6             181190527 366 - 181584905 AATTCAACAGTGAAATCCTCATTGGGTTTGGAAACAGACACTGTGTC--TCGGGGGG--TCCACTGTGAATG-CCACGGCCCC------------GTCCCAGTCGGAAGAGTGTCAGGCAGCACAGCCAGGCTCTCAGGC-GCCCGCA--CCACGCATG-------------------------------CACCACACGCTC--CCAAGGACGCGCTC-----------------CTCGCTGCCAAGAGCTGCAGCACA--GAGCTCTATCCACACTGCTCAGGCTTTGGAAGGCCAGCGG-CAGGGCCTGTCCAGGGCCCAGCACTTGCCACATGAGCGGGTGAGCCAGGGTCTTCCCTGAC-AGTGATGCTGGGAGCTAGGTCTCACTTTGGCCACA-----GAGACGCCCTGA--GCGCCTCCCAGCCTTTGCAGAGCAGCAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      185386 366 -   1764207 AATTCAACAGTGAAATCCTCATTGGGTTTGGAAACAGACACTGTGTC--TCGGGGGG--TCCACTGTGAATG-CCACGGCCCC------------GTCCCAGTCGGAAGAGTGTCAGGCAGCACAGCCAGGCTCTCAGGC-GCCTGCA--CCACGCATG-------------------------------CGCCACACGCTC--CCAAGGACGCGCTC-----------------CTCGCTGCCAAGAGCTGCAGCACA--GAGCTCTATCCACACTGCTCAGGCTTTGGAAGGCCAGCAG-CAGGGCCTGTCCAGGGCCCAGCACTTGCCACATGAGCGGGTGAGCCAGGGTCTTCCCTGAC-AGTGATGCTGGGAGCTAGGTCTCGCTTTGGCCACA-----GAGACGCCCTGA--GCGCCTCCCAGCCTTTGCAGAGCAGCAAA
i macNem1.NW_012012389v1   I 156 C 0
s cerAty1.NW_012009470v1      200097 366 -  16742782 AATTAAACAGTGAAATCCTCATTGGGTTTGGAAACAGACACTGTGTC--TTCGGGGG--TCCACTGTGAATG-CCACGGCCCC------------GTCCCAGTCGGAAGAGTGTCAGGCAGCACAGCCAGGCTCTCAGGC-GCCCACA--CCACGCATG-------------------------------CGCCACACGCTC--CCAAGGAAGCGCTC-----------------CTCGCTGCCAAGAGCTGCAGCACA--GAGCTCTATCCACACTGCTCAGGCTCTGGAAGGCCAGCAG-CAGGGTCTGTCCAGGGCCCAGCACTTGCCACATGAGCGGGTGAGCCAGGGTCTTCCCTGAC-AGAGATGCTGGGAGCTGGGTCTCACTTTGGCCACA-----GAGACGCCCTGA--GCGCCTCCTAGCCCTTGCAGAGCAGCAAA
i cerAty1.NW_012009470v1   I 114 C 0
s chlSab2.chr4              90509261 367 -  91010382 AATTAAACAGTGAAATCCTCATTGGGTTTGGAAACAGACACTGCGTC--TTGGGGGG--TCCACTGTGAATG-CCACAGCACC------------ATTCTAGTCGGAAGAGTGTCAGGCAGCACAGCCAGGCACTCAGGC-GCCCGCA--CCGCGCATG-------------------------------CGTCACACGCTC--CCAAGGAAGCGCTC-----------------CTCGCTGCCAAGAGCTGCAGCACA--GAGCTCTATCCACACTGCTCAGGCTCTGGGAGGCCAGCAG-CAGGGCCTGTCCAGGGCCCAGCACTTACCACATGAGCAGGTGAGCCAGGGTCTTCCCTGACAAGAGATGCTGGGAGCTAGGTCTCACTTTGGCCACA-----GAGACGCCCTGA--GCGCCTCCCAGCCCTTGCAGAGCAGCAAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82569 366 -    438239 AATTAAACAGTGAAATCCTCATTGGGTTTGGAAACAGACACTGTGTC--TTCGGGGG--TCCACTGTGAATG-CCACGGCCCC------------GTCCCAGTCGCAAGAGTGTCAGGCAGCACAGCCAGGCTCTCAGGC-GCCCACA--CCACGCATG-------------------------------CGCCACACGCTC--CCAAGGAAGCGCTC-----------------CTCGCTGCCAAGAGCTGCAGCACA--GAGCTCTATCCACACTGCTCAGGCTCTGGAAGGCCAGCAG-CAGGGCCTGTCCAGGGCCCAGCACTTGCCACATGAGCGGGTGAGCCAGGGTCTTCCCTGAC-AGTGATGCTGGGAGCTAGGTCTCACTTTGGCCACA-----GAGACGCCCTGA--GCGCCTCCCAGCCTTTGCAGAGCAGCAAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      132062 350 -    514179 AATTAAGCAGTGAAGTCCTCACTGGGTTTGGAAACAG----TGTGTC--TTGGGGTG--TCCACTGTGAATG-CCACGGCCCT------------GTCCCAGTCAGAAGAGTGTCAGGCAGCAGAGCCAGGCTCTCAGGC-GCCCGCA--CCATGCATG-------------------------------TGCCACACGCTC--CCAAGGAGGCGCTC-----------------CTCACTGCCAAGAGCGGCAGCACA--GAGCTCTATCCACACT------------GGAAGCCAGCGG-CAGGGCCTGTCCAGGGCCCAGCACTTGCCACATGAGTGGGTGAGCCAGGGTCTTCCCTGGC-AGTGATGCTGGGAGCTAGGTCTCACTTTGGCCACA-----GAGACGCCCTGA--GCGCCTCCCAGCCCTTGCAGAGCAGCAAA
i colAng1.NW_012118799v1   I 98 C 0
s saiBol1.JH378155          15944202 327 +  16417988 CCTTGAACAGCAAAATCTGAATTGGGTTTGGAAACAGACAGTGTGTC--TTGGGGGG--TCCATTATTAATGCCCACGGCCCC------------ACCCAAGGGGGAAGAGAGTTGGAC-CAGCAGCCAGGCTCTCAGGAGGCCAGCA--ACACACATG----------------------------------------CTC--CCAAGGAG-----------------------------GCCGAGAGCTACTGCGCA--GAGCTCCGTCCACACCGGCCAGGCTCCGGAAG-------G------------CAGCGCCCAGCACTCGCCACATGAGTGGGGGAGCCAGGGTCTTCCCTGAC-AGTGATTCTGGGAGCTGGGTCTCACTCTGGCCACA-----CAGACACCTGGA--GTGCCT-CCAGCCCTTGCAGAGCAGTGAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       21335 346 +    298490 AATTGAACAGCAAAATCCTAATTGGGTTTGGAAACAGACAGTGTGTC--TTGGGGGG--TCCATTATTAATGCCCACGGCCCC-------------CTCCAGGGGGAAGAGAGTTGCAC-CAGCAGCCAGGCTCTCAGGAGGCCAGCA--ACGCGCATT----------------------------------------CTC--CCAAGGAGGCTCTC-----------------CTCGCTGCCAAGAGCCGCAGCGCA--GAGCCCTATCCACGCTGGTCAGGCTCCGGAAGGCCAGCAG------------CAGCGCCCAGCACTCGCCGCATGGGCGGGAAAGCCAGGGTCTTCCCTGAC-AGTGATGCTGGGAGCTGGGTCTCACTCAGGCCACA-----CAGGTACCCTGA--GTGCCTCCCAGCCCTTGCAGAGCAGTGAA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25339761 345 -  25620257 AATTGAACAGCAAAATCCTAACTGGGTTTGGAAACAGACA--GTGTC--TTGGGGGG--TCCATTATTAACGCCCATGGCCCC------------ACCCCAGGGGGAAGAGAGTTGGAC-CAGCAGCCAGGCTCTCAGGAGGCCAGCG--ACACGCATG----------------------------------------CTC--CCAAGGAGGCTCTC-----------------CTCGCTGCCAAGAGCCGCAGCGCA--GAGCTCTATCCACACTGGTCAGGCTCCGGAAGGCCAGCAG------------CAGCGCCCAGCACTCACCGCATGAGTGGGAAAGCCAGGGTCTTCCCTGAC-AGTGATGCTGGGAGCTGGGTCTCACTCTGGCCACA-----CAGACACCCTGA--GTGCCTCCCAGGCCTTGCACAGCAGCGAA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11676917 442 +  42124431 AACTAAACACTGAAATTCTAAGTAGGCTTGAAAATAACCAGTGTGCCAATAGGGAAG--TTGGTCACTGATACCCACAGCCCATCCCTATGCCCAGGCCCAGGCAGGTGTG-GCCTAGCAGAGTGGCCAGGCTCCCTAGA-GCCTACAGTTCACCAGTGCAGAGTGGGGGAGAGGCCCTGGGAGAGAAGCCAGCACAGACTCGTGCAGCAAGGTGTTCATGAGAGAATCTATCTACTCACAGCCAAGAGATGTAAAACATGGAGTCTCCAGGACACTGGATGGACACTGCCAGGACAGGAGCCACAGTATGCCCACAGTTCAGTACCTACCACACACAAGAACAGTGGAGTATCTTCCCTGACAAGTGCTGCTGTGATTTGGGTTTTACTTTGGTTTCATTAGGTCAGCACCCAGAAGATGCCCCCCAACC-TCACCAAGCAGTGAA
i canFam3.chr34            C 0 I 122
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I

a score=2112356.000000
s hg38.chr5_KI270793v1_alt      4457 270 +    126136 TGCCA-CCCCAGTTGCTGCCCTCCCATCCGATGCT---GCCACTGCCAACTGCCAGCCCCCAGTGCCCAGGGGAGCTGAGCTCCTGCAAGAGCAAAGTCCACCAGGACCCAGG----GATACTGTCAGCTCCTCAAGTCACTTTTAGAAGGTCAGAG-AAAAATTGTTTTGATCGTTAGTTACTGAAAAA-TGGTCAAACTGTGGCAGACTGGGGCATTCTTCCAAGAGGACTCCTTTAAACAGATTTCAATCCATACCACTA-ACCTACACTGTCACCA-------A
s panTro5.chr5             181270173 272 - 181907262 TGC-A-CCCCAGTTGCTGCCCTCCCATCCAATGCTCCTGCCACTGCCAACTGCCAGCCCCCAGTGCCCAGGG-AGCTGAGCTCCTGCAAGAGCAAAGTCCACCAGGACCCAGG----GATACTGTCAGCTCCTCAAGTCACTTTTAGATGGTCAGAC-AAAAATTGTTTTGATCGTTAGTTACTAAAAAAATGGTCAAACTGTGGCAGACTGGGGCATTCTTCCAAGAGGACTCCTTTAAACAGATTTCAATCCATACCACTA-ACCTACACTGTCACCA-------A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991689 272 - 183735486 TGC-A-CCCCAGTTGCTGCCCTCCCATCCAATGCTCCTGCCACTGCCAACTGCCAGCCCCCAGTGCCCAGGG-AGCTGAGCTCCTGCAAGAGCAAAGTCCACCAGGACCCAGG----GATACTGTCAGCTCCTCAAGTCACTTTTAGAAGGTCAGAC-AAAAATTGTTTTGATCGTTAGTTACTAAAAAAATGGTCAAACTGTGGCAGACTGGGGCATTCTTCCAAGAGGACTCCTTTAAACAGATTTCAATCCATACCACTA-ACCTACACTGTCACCA-------A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       82241 272 +    698298 TGC-A-CCCCAGTTGctgccctcccatccgatgctcctgccactgccaactgccagcccccagtgccCAGGGGAGCTGAGCTCCTGCAAGTGCAAAGTCCACCAGGACCCAGG----GATACTGTCAGCTCCTCAAGTCACTTTTAGAAGGTCAGAG-AAAAATTGTTTTGATCGTTAGTTACTAAAAAA-TGGTCAAACTGTGGCAGACTGGGGCATTCTTCCAAGAGGACTCCTTTAAACAGATTTCAATCCATACCACTA-ACCTACACTGTCACCA-------A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120506382 271 - 121039945 TGC-ACCCCCAGTTGCTGCCCTCCCATCCGATGCTCCTGCCACTGCCAACTGCCGGCCCCCAGTGCCCAGGGTAGCTGAACTCCTGCAGAAGCAAAGTCCACCAGGACCCAGG----GATACTGTCAGCTTCTCAAGTCACTTTCAGAAGGTCAGAG-AAAAATTGTTTTGATCGTTAGTTACTAAAAAA-TGGTCAAACTGTGGCAGACTGGGGCATTCTCACAAGACGACTCCTTGAAAC--ATTTCAACCCATACCACTA-ACCTACACTATCACCA-------A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179459773 280 - 180051392 TGC-ACCCCCAGTCACTGGCCTCCCATCCGATGCTCCTTCCACTGCCAGCTGCCAGCCCCCAGTGCCCAGGGTGGCTGAGCTCCTGCAGAAGTAAAGTCCACCAGGACCCAGG----CCTGCTGTCAGCTCCTCGAGTCACTTTTAGAAGGTCAGAG-AAAAGTTGTTTTGATCATTAGTTACTAAAAAA-TGGTCAAACTGTGGCAGACTGGGGCATTCTCACAAGAGGACTCCTTTAAACAGATTTCAATCCATACTGCTG-ACCTACACTGTCACCAAACGGGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181190893 280 - 181584905 CGC-ACCCCCAGTCACTGGCCTCCCATCCGATGCTCCTTCCACTGCCAGCTGCCAGCCCCCAGTGCCCAGGGTGGCTGAGCTCCTGCAGAAGTAAAGTCCACCAGGACCCAGG----CCTGCTGTCAGCTCCTCGAGTCACTTTTAGAAGGTCAGAG-AAAAGTTGTTTTGATCATTAGTTACTAAAAAA-TGGTCAAACTGTGGCAGACTGGGGCATTCTCACAAGAGGACTCCTTTAAACAGATTTCAATCCATACTGCTG-ACCTACACTGTCACCAAACGGGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      185752 278 -   1764207 CGC-ACCCCCAGTCACTGGCCTCCCATCCGATGCTCCTTCCACTGCCAGCTGCCAGCCCCCAGTGCCCAGGGTGGCTGAGCTCCTGCAGAAGTAAAGTCCACCAGGACCCAGG----CCTGCTGTCAGCTCCTCGAGTCACTTTTAGAAGGTCAGAG-AAAAGTTGTTTTGATCATTAGTTACTAAAAAA-TGGTCAAACTGTGGCAGACTGGGGCATTCTCACAAGAGGACTCCTTT--ACAGATTTCAATCCATACTGCTG-ACCTACACTGTCACCAAACGGGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      200463 277 -  16742782 CGC-ACCCCCAGTCACTGGCCTCCCATCCAATGCTCCTTCCACTGCCAGCTGCCAGCCCCCAGTGCCCAGGGTGGCTGAGCTCCTGCAGAAGCAAAGTCCACCAAGACCCAGG----CCTACTGTCAGCTCCTCGAGTCACTTTTAGAAGGTCAGAG-AAAA---GTTTTGATCATTAGTTACTAAAAAA-TGGTCAAACTGTGGCAGACTGGGGCATTCTCACAAGAGGACTCCTTTAAACAGATTTCAATCCACACCACTA-ACCTACACTGTCACCAAACGGGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90509628 280 -  91010382 CGC-ACCCCCAGTCACTGGCCTCCCATCCGATGCTCCTTCCACTGCCAACTGCCAGCCCCCAGTGCCCAGGGTGGCTGAGCTCCTGCAGAAGCAAAGTCCACCAAGACCCAGG----CCTACCGTCAGCTCCTCGAGTCACTTTCAGAAGGTCAGAG-AAAAATTGTTTTGATCATTAGTTACTAAAACA-TGGTCAAACTGTGGCAGACTGGGGCATTCTCACGAGAGGACTCCTTTAAACAGATTTCAATCCATACCACTA-ACCCACACTGTCACCAAACGGGGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       82935 277 -    438239 CGC-ACCCCCAGTCACTGGCCTCCCATCCGACGCTCCTTCCACTGCCAGCTGCCAGCCCCCAGTGCCCAGGGTGGCTGAGCTCCTGCAGAAGCAAAGTCCACCAAGACCCAGG----CCTACTGTCAGCTCCTTGAGTCACTTTTAGAAGGTCAGAG-AAAA---GTTTTGATCATTAGTTACTAAAAAA-TGGTCAAACTGTGGCAGACGGGGGCATTCTCACAAGAGGACTCCTTTAAACAGATTTCAATCCACACCACTA-ACCTACACTGTCACCAAACGGGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      132412 284 -    514179 CGC-ACCCCCAGTCACTGGCCTCCCATCCGATGCTCCTTCCACTGCCAACTGCCAGCCTCCAGTACCCAGGGTAGCTGAGCTCCTGCAGAAGCAAAGTCCACCAGGACCCAGGGCTACTTACTGTCAGCTCCTCGAGTCACTTTTAGAAGGTCAGAG-AAAAATTGTTTTGATCATTAGTTACTACAAAA-TGGTCAAACTGTGGCAGACTGGGGCATTCTCACAAGAGGACTCCTTTAAACAGATTTCAATCCATACCACTA-ACCTACACTGTCACCAAACAGGGA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15944529 254 +  16417988 TGC-ACCCCCAATTGCTGCCCTCCCACCTGACACTCCTGCC-CCGGCACTCGCCAGCC-CGAGC---------------CCTCCTGCAGAAGCAAAGCCCACCAGGACACAGG----ACTACCATCAG---CAAAAACCACTTTCAGAAGGTTACAG-AAAAACTGTCTTGATTGTTAGTCACTAAAAAA-CGGTCAAACGGTGGCAGACTGGAGCATTCTTACAAGTGGACTCCTTTAAACAGATTTCAGTCCACAGCACTAAACCGACACTGTCACCAA-------
i saiBol1.JH378155         C 0 I 6
s cebCap1.NW_016108158v1       21681 272 +    298490 TGC-ACCCCCAATTGCTGCCCTCCCGTCCAACGCTCCTGCC-CCGCCACTCGCCAGCC-CCAGTGCCCAGTGCCGCTGAGCTCCTGCAGAAGCAAAGCCCACCAGGACGGAGG----GCTACCATCAGCTCCTCAAGCCACTTTCAGAAGGTTAGAG-AAAAACTGTTTTGATTGTTAGTTACTAAAAAA-TGGTCAAACTGTGGCAGACTGGGGCATTCTTACAAGAGGACTCCTTTAAACAGATTTCAATCCACACCACTAAGCCTACACTGTCACCAA-------
i cebCap1.NW_016108158v1   C 0 I 6
s aotNan1.NW_018503740v1    25340106 272 -  25620257 TGC-A-CCCCAATTGCTGCCCTCCCGTCCGACGCTCCTGTC-CCGCCACTCGCCAGCC-CCAGTGCCCAGTGCAGCTGAGCTCTTGCAAAGGCAAAGCCCACCGGGACGCAGG----GCTCCCATCAGCTCCTCTAGCCACTTTCAGAAGGTTAGAGAAAAAACTGTTTTGATTGTTAGTTACTAAAAAA-TGGTCAAACTGCGGCAGACTGGGGCATTCTTACAAGAGGACTCCTTTAAACAGATTTCAATCCACACCACTACACCTACACTGTGACCAA-------
i aotNan1.NW_018503740v1   C 0 I 40
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11677359 122 +  42124431 I

a score=228809.000000
s hg38.chr5_KI270793v1_alt      4727 30 +    126136 ACAGAGGGTGTGTGTGCTGCATGCT----GACAG
s panTro5.chr5             181270445 30 - 181907262 ACAGAGGGTGTGTGTGCTGCATGCT----GACAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991961 30 - 183735486 ACAGAGGGTGTGTGTGCTGCATGCT----GACAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       82513 30 +    698298 ACAGAGGGTGTGTGTGCTGCATGTT----GACAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120506653 34 - 121039945 ACAGAGCCTGTGTGTGCTGCGTGCTGACAGACAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460053 34 - 180051392 ACAGAGGGTGTGTGTGCTGCATGCTGACAGACAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181191173 34 - 181584905 ACAGAGGGTGTGTGTGCTGCATGCTGACAGACAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186030 34 -   1764207 ACAGAGGGTGTGTGTGCTGCATGCTGACAGACAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      200740 34 -  16742782 ACAGAGGGTGTGTGTGCTGCATGCTGACAGACAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90509908 34 -  91010382 ACAGACGGTGTGTGTGCTGCATGCTGACAGACAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       83212 34 -    438239 ACAGAGGGTGTGTGTGCTGCATGCTGACAGACAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      132696 34 -    514179 ACAGAGGGTGTGTGTACTGCATGCTGACAGACAG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15944789 34 +  16417988 ACGGAGGGTGTGTGCGCTACATGCTGACGGACAG
i saiBol1.JH378155         I 6 C 0
s cebCap1.NW_016108158v1       21959 34 +    298490 ACGGAGGGTGTGTGCACTAGATACTGACAGACAG
i cebCap1.NW_016108158v1   I 6 C 0
e aotNan1.NW_018503740v1    25340378 40 -  25620257 I
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11677359 122 +  42124431 I

a score=1534865.000000
s hg38.chr5_KI270793v1_alt      4757 190 +    126136 CTCTTTCCAGCATCTCCAGAAACTTCTCCAAGTAGCAAAGCAGTGCAGTTTAAAATGTTAGAATTTggccaggctcagtggcccacgcctgtattcccagcactttgggaggcc-----------------------------------------------------agagtgggcagatg------------------------acttgaggccaggagttcgaaaccagcctggccaacatggcaaaaccctatctctactaaaa
s panTro5.chr5             181270475 190 - 181907262 CTCTTTCCAGCATCTCCAGAAACTTCTCCAAGTAGCAAAGCAGTGCAGTTTAAAATGTTAGAATTTggccaggctcagtggcccacgcctgtattcccagcactttgggaggcc-----------------------------------------------------agggtgggcagatg------------------------acttgaggccaggagttcgaaaccagcctggccaacatggcaaaaccctatctctactaaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182991991 190 - 183735486 CTCTTTCCAGCATCTCCAGAAACTTCTCCAAGTAGCAAAGCAGTGCAGTTTAAAATGTTAGAATTTggccaggctcagtggcccacgcctgtattcccagcactttgggaggcc-----------------------------------------------------agggtgggcagatg------------------------acttgaggccaggagttcgaaaccagcctggccaacatggcaaaaccctatctctactaaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       82543 190 +    698298 CTCTTTCCAGCATCTCCAGAAACTTCTCCAAGTAGCAAAGCAATGCAGTTTAAAATGTTAGAATTTggccaggctcagtggcccacgcctgtattcccagcactttgggaggcc-----------------------------------------------------agggtgggcagatg------------------------acttgaggccaggagttcgaaaccagcctggccaacatggcaaaaccctatctctactaaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120506687 190 - 121039945 CTCTTTCCAGCATCTCCAGAAGCTTCTCCAAGTAGCAAAGCAGTGCAGTTTAAAATGTTAGAATTTggccaggctcagtggcccacgcctgtattcccagcactttgggaggcc-----------------------------------------------------agggtgggcagatc------------------------acttgaggccaggagtttgaaaccagcctggccaacatggcaaaaccccatctctactaaaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460087 188 - 180051392 CTCTTTCCAGCACCTCCAGAAACTTCTCCAAGCAGCAAGGCAGTGCCGTGTAAACTGTTAGAATTTGGCCAGCCTC--tggcccaagcctgtaatcccagcactttgggaggcc-----------------------------------------------------aggctaggcggatc------------------------acttcaggccaggagttcgaaaccagcctggcccacatggcaaaaccccatctctactaaaa
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181191207 188 - 181584905 CTCCTTCCAGCACCTCCAGAAACTTCTCCAAGCAGCAAGGCAGTGCCGTGTAAACTGTTAGAATTTGGCCAGCCTC--tggcccaagcctgtaatcccagcactttgggaggcc-----------------------------------------------------aggctaggcggatc------------------------acttcaggccaggagttcgaaaccagcctggcccacatggcaaaaccccatctctactaaaa
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186064 188 -   1764207 CTCTTTCCAGCACCTCCAGAAACTTCTCCAAGCAGCAAAGCAGTGCCGTGTAAACTGTTAGAATTTGGCCAGCCTC--tggcccaagcctgtaatcccagcactttgggaggcc-----------------------------------------------------aggctaggtggatc------------------------acttcaggccaggagtttgaaaccagcctggcccacatggcaaaaccccatctctactaaaa
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      200774 189 -  16742782 CTCTTTCCA-CACCTCCAGAAACCTCTGCAAGCAGCAAAGCAGCGCCGTGTAAACTATTAGAATTTggccagcctcagtggcccaagcctgtaatcccagcactttgggaggcc-----------------------------------------------------agggtgggcggatc------------------------acttcgggccaggagttcgaaaccagcctggcccacatggcaaaaccccatctctactaaaa
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90509942 190 -  91010382 CTCTTTCCAGCACCTCCAGAAACTTCTCCAAGCAGCAAAGCAGTGCCGTGTAAACTGTTAGAATTTggccagcctcagtggcccaagcctgtaatcccagcactttgggaggcc-----------------------------------------------------agggtgggcggatc------------------------acttcaggccaggagttcgaaaccagcctggcccacatggcaaaaccccatctctactaaaa
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       83246 187 -    438239 CTCTTTCCA-CACCTCCAAAAACCTCTCCAAGCAGCAAAGCAGTGCCGTGTAAACTGTTAGAATTTGGCCAGCCTC--tggcccaagcctgtaatcccagcactttgggaggcc-----------------------------------------------------agggtgggtggatc------------------------acttcaggccaggagttcgaaaccagcctggcccacatggcaaaaccccatctctactaaaa
i manLeu1.NW_012110441v1   C 0 I 11876
s colAng1.NW_012118799v1      132730 190 -    514179 CTCTTTCCAGCACCTCCAGAAACTTCTCCAAGTAGCAAAGCAGTGGCATGTAAAATGTTAGAATTTggccagcctcagtggcccaagcctgtaatcccagcactttgggaggcc-----------------------------------------------------agggtaggcggatc------------------------acttcagaccaggagtttgaaaccagcctggccaacatggcaaaaccccatctctagtaaaa
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15944823 266 +  16417988 CTCTTTCCAGCATCTCCAGAAACTTTTCC-AGTGGCAAAGCAGTGCAGTTTAAAATGCTAGAATTTggccaggcacagcagcccaggcctgtcagcccagcaccttgggaggcccggggcagacagatctcaaggccaggagGGGCAGACAGATCTCAAGGCCAGGAGGGGCAGACAGATCTCAAGGCCAGGAGGggcagacagatctcaaggccaggagttccagaccagcctggccaacgtggcaaaaccccatctctactaaaa
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       21993 190 +    298490 CTCTTTCCAGTATCTCCAGAAACTTCTCCAAGTGGCAAAACAGTGCAGTTTAAAATGTTAGAATTTggccaggcacaggagccaacgcctgtcatcccagcactttgggaggcc-----------------------------------------------------agggcagacagatc------------------------actcaaggccaggagttcgagaccagcctggccaacgtggcaaaacctcatctctactaaaa
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25340418 190 -  25620257 CTCTTTCCAGCATCTCCAGGAACTTCTCCAAGTGGCAAAACAGTGCAGTTTAAAATGTTAGAATCTggccaggcacagcagcccacgcctgtggtcccagcactttgggaggcc-----------------------------------------------------agggcagacagatc------------------------gctcaaggtcaggagttcgagaccagcctggccagcacgacaaaaccccatctctactaaaa
i aotNan1.NW_018503740v1   I 40 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11677359 122 +  42124431 I

a score=797607.000000
s hg38.chr5_KI270793v1_alt      4947 123 +    126136 agacacaaattagcagggcacagtggcacgcacctgtaatctcagctacttgggaggctg----cggcaggagtattgcttgaacccgggaggcggaggttgcagtgagctaagatcacgccactgc
s panTro5.chr5             181270665 123 - 181907262 agacacaaattagcagggcatggtggcacgtgcctgtaatctcagctacttgggaggctg----aggcaggagtattgcttgaacccgggaggcggaggttgcagtgagctgagatcacgccactgc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992181 123 - 183735486 agacacaaattagcagggcacggtggcacgcgcctgtaatctcagctacttgggaggctg----aggcaggagtattgcttgaacccgggaggcggaggttgcagtgagctgagatcacgccactgc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       82733 123 +    698298 agacacaaattagcagggcacggtggcacgcacctgtaatctcagctacttgggaggctg----aggcaggagtattgcttgaacccgggaggcggaggttgcagtgagctgagatcacgccactgc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120506877 123 - 121039945 agacacaaattagcagggcatgctggcacgcacctgtaatctcagctacttgggaggctg----aggcaggagtattgcttgaacccgggaggtggaggttgcagtgagctgagatcacgccactgc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460275 115 - 180051392 agacaaaaatcagcagggcatggtggcatgtacctgtaatcccagctacttgggaggctg----aggcaggagtattgctt--------gaggcggagattacagtaagctgagatcacgccacaga
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181191395 115 - 181584905 agacaaaaatcagcagggcatggtggcatgtacctgtaatcccagctacttgggaggctg----aggcaggagtattgctt--------gaggcggagattacagtaagctgagatcacgccacaga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186252 115 -   1764207 agacaaaaatcagcagggcatggtggcatgtacctgtaatcccagctacttgggaggctg----aggcaggagtattgctt--------gaggcggagattacagtaagctgagatcacgccacaga
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      200963 115 -  16742782 agacaaaaattagcagggcatggtggcacgcacctgtaatcccagctacttgggaggctg----aggcaggagtattgctt--------gaggcggagattgcagtaagctgagatcacgccacaga
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510132 115 -  91010382 agacaaaaattagcagggcatggtggcatgcacctgtaatcccagctactcgggaggctg----aggcaggagcaatgctt--------gaggcggagattgcagtaagctgagatcacgccacaga
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      132920 115 -    514179 agacaaaaattagcagggcatggtggcacgcacctgtaatcccagctacttgggaggctg----aggcaagactattgctt--------gaggcggagattgcagtgagctgagatcacgccacaga
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15945089 123 +  16417988 atacaaaagttagctgggcgtggtagtgcacgcctgtagtcccagcaacttgggaggcca----aggcaggagtaatgtttgaacctgggaggtggaggttgcagtgagccaagatcaccccactgc
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       22183 127 +    298490 atacaaaaatgagctgggtgtggtagcacatgcctgtagtcccagctacttgggaggccaagacagacaggagtaatgcttgaacctgggaggtggaggttgcagtgagccaagatcaccccactgc
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25340608 123 -  25620257 ctacaaaaattagctgggcgtggtagcgcatgcctgtagtcccagctacttgggaggcca----aggtaggagtaatacttgaacctgggaggtggaggttgcagtgggccaagatcaccgcactgc
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11677359 122 +  42124431 I
e manLeu1.NW_012110441v1       83433 11876 -    438239 I

a score=112658.000000
s hg38.chr5_KI270793v1_alt      5070 13 +    126136 actccagcctggg
s panTro5.chr5             181270788 13 - 181907262 actccagcctggg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992304 13 - 183735486 actccagcctggg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       82856 13 +    698298 actccagcctggg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507000 13 - 121039945 actcaagcctggg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460390 13 - 180051392 actctagtctggg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181191510 13 - 181584905 actctagtctggg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186367 13 -   1764207 actctagtctggg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201078 13 -  16742782 actctagtctggg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510247 13 -  91010382 actctagtctggg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       95309 13 -    438239 actctagtctggg
i manLeu1.NW_012110441v1   I 11876 C 0
s colAng1.NW_012118799v1      133035 13 -    514179 actctagtctggg
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15945212 13 +  16417988 actccagcctggg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       22310 13 +    298490 cctccagcctggg
i cebCap1.NW_016108158v1   C 0 I 317
s aotNan1.NW_018503740v1    25340731 13 -  25620257 actccagcctggg
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11677359 122 +  42124431 I

a score=2103659.000000
s hg38.chr5_KI270793v1_alt      5083 339 +    126136 cgatgaagcgagactatgtctcaaaaataa-----aat-aaaaTGTGAGAATTCCATATACAAACACATGTGTGATCACATCACCATCAAGATACCGCAGGCCAGTCCT--------------------------------------CCCTGTGATGAGGTGACACGGCCCCGCAT-GGCTCCACGATGGCCCCAGACAGCC-TTCCCGGTCTACTCGCTGAGGCGCTTAGGTGCTCCTCCACCTGTTTTCCCACCTCTGGTGTGCAGCTTTGCTG-----ACGTCACACGAACTTCATGGGGCTGACAGGGTGAGGGCTGCCGGGTGTTCATCTGGTGGGTGGCAAAACCCCAGCTGGCCCTCAGTCCCGACGCCCACAACGGGCAGTA
s panTro5.chr5             181270801 339 - 181907262 cgatgaagcgagactatgtctcaaaaataa-----aat-aaaaTGTGAGAATTCCATTTACAAACACATGTGTGATCACATCACCATCAAGACACCGCAGGCCAGTCCT--------------------------------------CCCTGTGATGAGGTGACACGGCCCCGCAT-GGTTCCATGATGGCCCCAGACAGCC-TGCCCAGTCTACTCGCTGAGGCGCTCAGGTGCTCCTCCACCTGTTTTCCCACCTCCAGTGTGCAGCTTCGCTG-----ACGTCACACGAACTTCTTGGGGCTGACAGGGTGAGGGCTGCCAGGTGTTCATCTGGTGGGTGGCAAAACCCCAGCTGGCCCTCAGTCCCGACGCCCACAATGGGCAGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992317 339 - 183735486 cgatgaagcgagactatgtctcaaaaataa-----aat-aaaaTGTGAGAATTCCATTTACAAACACATGTGTGATCACATCACCATCAAGACACCGCAGGCCAGTCCT--------------------------------------CCCTGTGATGAGGTGACACGGCCCCGCAT-GGCTCCATGATGGCCCCAGACAGCC-TGCCCAGTCTACTCGCTGAGGCGCTCAGGTGCTCCTCCACCTGTTTTCCCACCTCCAGTGTGCAGCTTCGCTG-----ACGTCACACGAACTTCTTGGGGCTGACAGGGTGAGGGCTGCCAGGTGTTCATCTGGTGGGTGGCAAAACCCCAGCTGGCCCTCAGTCCCGACGCCCACAATGGGCAGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       82869 339 +    698298 cgatgaagcgagactatgtctcaaaaataa-----aat-aaaaTGTGAGAATTCCATTTACAAACACATGTGTGATCACATCACCATCAAGACACCGCAGGCCAGTCCT--------------------------------------CCCTGTGATGAGGTGACACGGCCCCGCAT-GGCTCCACGATGGCCCCAGACAGCC-TGCCCGGTCTACTCGCTGAGGTGCTCAGGTGCTCCTCCACCTGTTTTCCCACCTCCGGTGTGCAGCTTCGCTG-----ACGTCACACGAACTTCATGGGGCTGACAGGGTGAGGGCTGCTGGGTGTTCATCTGGTGGGTGGCAAAACCCCAGCTGGCCCTCAGTCCCGACGCCCACAACGGGCAGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507013 332 - 121039945 cgacgaagcgagactatgtcccaaaaatta-----aat-aaaaTGTGAGAATTCCATTTACAAACACACGCGTGATCACATCACCGTCAAGACACCACAGGCCAGCCCT--------------------------------------CCCTATGATGAGGTGACATGGCCCTGCAT-GGCTCCACGACGGCCCCAGACAGCC-TGCCCAGTCTACTCGCTGAGGCGCCCAGGCGCTCCTCCACCCGTTTTCCCACCTCCTGCGTGCAGCTTTG------------CACATGAACTTGACGGGGCTGACAGGGTGACGGCTGCCGGGTGTTCATCTGGTGGGTGGCAAAACCCCAGCTGGCCCTCAGTCCCGACGCCCACAACAGACATTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460403 343 - 180051392 caatgaagcgagactatgtctcaaaaataacataaaat-aaaCTGTGAGAATTCCATTTACAAACAC--GTGTGATCACGTCACCGTCAAGACACCACAGGCCAGTCCT--------------------------------------CCCTGTGATGAGGTGACAAGGCACCACATGGGCTCCACGATGGCCAAAGACGGCC-TACCCGGTCTACTGACTGAGGCGCTCAGGCGTTCCTCCACCTATTTTCCCACCTCCCGTGTGCAGCTTCACTG-----ACATCACACGGACTTCACGGGGCTGACAGGGTGAGGTCTGCTGGGTGTTCATCTGGTGTGTGGCAAAACCCCAGCTGGCCCTCAGTCCCGATGGGCACGACGGACAGTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181191523 343 - 181584905 caatgaagcgagactatgtctcaaaaataacataaaat-aaaCTGTGAGAATTCCATTTACAAACAC--GTGTGATCACGTCACCGTCAAGACACCACAGGCCAGTCCT--------------------------------------CCCTGTGATGAGGTGACAAGGCACCACATGGGCTCCACGATGGCCAAAGACGGCC-TACCCGGTCTACTGACTGAGGCGCTCAGGCGTTCCTCCACCTATTTTCCCACCTCCCGTGTGCAGCTTCACTG-----ACATCACACGGACTTCACGGGGCTGACAGGGTGAGGTCTGCTGGGTGTTCATCTGGTGTGTGGCAAAACCCCAGCTGGCCCTCAGTCCCGATGGGCACGACGGACAGTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186380 340 -   1764207 caatgaagcgagactatgtctcaaaaataacataaaat-aaaCTGTGAGAATTCCATTTACAAACAC--GTGTGATCACGTCACCGTCAAGACACCACAGGCCAG---T--------------------------------------CCCTGTGATGAGGTGACAAGGCACCACATGGGCTCCACGATGGCCAAAGACGGCC-TACCCGGTCTACTGACTGAGGCGCTCAGGCGTTCCTCCACCTATTTTCCCGCCTCCTGTGTGCAGCTTCACTG-----ACATCACACGGACTTCACGGGGCTGACAGGGTGAGGTCTGCTGGGTGTTCATCTGGTGTGTGGCAAAACCCCAGCTGGCCCTCAGTCCCGATGGGCACGACGGACAGTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201091 342 -  16742782 caatgaagcgagactatgtctcaaaaataacataaaat-aaaaTATGAGAATTCCATTTACAAACAC--GTGTGATCACGTCACCGTCAAGACACCACAGGCCAGTC-T--------------------------------------CCCTGTGATGAGGTGACAAGGCACCACATGGGCTCCACGATGGCCAAAGACAGCC-TACCCAGTCTACTGACTGAGGTGCTCAGGCGTTCCTCCACCTATTTTCCCACCTCCTGTGTGCAGCTTCACTG-----ACATCACACGGACTTCATGGGGCTGACAGGGTGAGGTCCGCTGGGTGTTCATCTGGTGGGCAGTAAAACCCCAGCTGGCCCTCAGTCCTGATGCACACGATGGACAGTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510260 374 -  91010382 caatgaagcgagactatgtctcaaaaataac-----ac-aaaaTATGAGAATTCCATTTACAAACAC--GTGTGATCACGTCACCGTCAAGACACCACAGGCCAGTCCTCCCTGTGATGAGGTGACAAGACACCACAGGTCAGTCCTCCCTGTGATGAGGTGACAAGACACCACATGGGCTCCACGATGGCCAAAGACGGCC-TACCCGGTCTACTGACTGAGGCGCTCAGACGCTCCTCCACCTATTTTCCCAGCTCCTGTGTGCAGCTTCACTG-----ACAT--CACGGACTTCACAGGGCTGACAGGGTGAGGTCCGCTGGGTGTTCATCTGGTGGGTGGCAAAATCCCAGCTGGCCCTCAGTCCCAATGCACGGAACGGACAGTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       95322 343 -    438239 caatgaagcgagactatgtctcaaaaataacataaaat-aaaaTATGAGAATTCCATTTACAAACAC--GTGTGATCACGTCACCGTCAAGACACCACAGGCCAGTCCT--------------------------------------CCCTGTGATGAGGTGACAAGGCACCACGTGGGCTCCACGATGGCCAAAGACAGCC-TACCCAGTCTACTGACTGAGGTGCTCAGGCGTTCCTCCACCTATTTTCCCACCTCCTGTGTGCAGCTTCACTG-----ACATCACACGGACTTCACGGGGCTGACAGGGTGAGGTCTGCTGGGTGTTCATCTGGTGTGTGGCAAAACCCCAGCTGGCCCTCAGTCCCGATGGGCACGACGGACAGTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      133048 338 -    514179 caatgaagcgagactatgtctcaaaaataacataaaat-aaaaTGTGGGAATTCCATTTACAAACAC--GTGTGATCACGTCACCGTCAAGACACCACAGGCCAGTCCT--------------------------------------CCCTGTGATGAGGTGACATGGCACCACACGGGCTCCACGATGGCCAAAGACGGCC-TACCCAGTCT----ACTGAGGCGCTGAGGCGCTCCTCCACCTGTTTTCCCGCCTCCTGTGTGCAGCTTCACTG-----ACATCACACGGACTTCATGGGGCTGACAGGGTGAGGTCTGCTGGGCGTTCATCTGGTGGGTGGCAAAACCCCA-CTGGCCCTCAGTCCCGACGCGCACGACGGACAGTA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15945225 282 +  16417988 tgacagagcgagactctgtatcaaaT-------------GAAGTGTTAGAATTCCAATTACAAATTCGTGGGTGGTCACATCATGGTCAGGACACT-----CCAGTCCT--------------------------------------CCCTGTGATGAGGTGATGTTGCCCCGTGT-CGCTCCACAATGG------------------------------------CTCAGACGCTCCTCCACCTGCTTTCCCACCTCCTGCATGTGGCTTCGCTG-----ACGTCACACAGACGTCACAGGGCTGA-AGGGCGAAGTCTGCTGGGCGTTCATCTGCTGGGCAGCAAAACCCTGGAGGGTCCTCAGTCCCG---------ACAGTCAGTT
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25340744 334 -  25620257 tggcagagtaagagtctgtatcaaataaaa--taaaataaaaGTGTTAGAATTCCATTTACAAACTCGTGGGTGGTCACATCATGGTCAGGACATT-----CCGGTCCT--------------------------------------GCCTGTGACGAGGCGACGTCGCCCCGTGT-CGCTCCACGATGGCCCCAGACAGCCGGGCCCAGTCCACTCGCCGAGGCCCTCAGAGGGTCCTCCACCCGCTTTCCCACCTCCCGCGTGCGGCTTCGCTGACGTCACGTCACGCGGACGTCACAGGGCTGA-AGGGCGAGGTCTGCCGGGCGTTCATCTGCTGGGCAGCAAAACCCCGGAGGGTCCTCAGTCCCG---------ACAGTCAGTC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e cebCap1.NW_016108158v1       22323 317 +    298490 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11677359 122 +  42124431 I

a score=28020.000000
s hg38.chr5_KI270793v1_alt      5422 3 +    126136 CCC
s panTro5.chr5             181271140 3 - 181907262 CCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992656 3 - 183735486 CCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       83208 3 +    698298 CCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507345 3 - 121039945 CCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460746 3 - 180051392 CCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181191866 3 - 181584905 CCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186720 3 -   1764207 CCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201433 3 -  16742782 CCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510634 3 -  91010382 CCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       95665 3 -    438239 CCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      133386 3 -    514179 CCC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15945507 2 +  16417988 -CC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       22640 3 +    298490 CCC
i cebCap1.NW_016108158v1   I 317 C 0
s aotNan1.NW_018503740v1    25341078 2 -  25620257 -CC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1834331 644 -   2165740 I
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11677359 122 +  42124431 I

a score=93522.000000
s hg38.chr5_KI270793v1_alt      5425 10 +    126136 AGGGGCCAGG
s panTro5.chr5             181271143 10 - 181907262 AGGGGCCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992659 10 - 183735486 AGGGGCCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       83211 10 +    698298 AGGGGCCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507348 10 - 121039945 AGGGGCTGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460749 10 - 180051392 AGGGGCCGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181191869 10 - 181584905 AGGGGCCGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186723 10 -   1764207 AGGGGCCGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201436 10 -  16742782 AGGGGCCGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510637 10 -  91010382 AGGGGCCGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       95668 10 -    438239 AGGGGCCGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      133389 10 -    514179 AGGGGCCGGG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15945509 10 +  16417988 CAGGGCCAGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       22643 10 +    298490 AGGGGCCAGA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25341080 10 -  25620257 CGGGGCCAGA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1834975 10 -   2165740 AGGAGCCAGG
i otoGar3.GL873745         I 644 C 0
e calJac3.chr2             203781076 2030 + 204313951 I
e canFam3.chr34             11677359 122 +  42124431 I

a score=180410.000000
s hg38.chr5_KI270793v1_alt      5435 22 +    126136 CACATCACCCACCAACGTG------------------CTT
s panTro5.chr5             181271153 22 - 181907262 CACATCACCCACCAACGTG------------------CTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992669 22 - 183735486 CACATCACCCACCAACGTG------------------CTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       83221 22 +    698298 CACATCACCCGCCAACGTG------------------CTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507358 40 - 121039945 CACATCACCCACCAACGTGCTTCAGCTGCGGGGCCTCCTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460759 40 - 180051392 CACATCACCCACCGAGGTGCTTTAGCTGTGGGGCCTCCTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181191879 40 - 181584905 CACATCACCCACCGAGGTGCTTTAGCTGTGGGGCCTCCTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186733 40 -   1764207 CACATCACCCACCGAGGTGCTTTAGCTGTGGGGCCTCCTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201446 40 -  16742782 CACATCACCCACCGACGTGCTTCAGCTGCGGGGCCTCCTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510647 40 -  91010382 CACATCACCCACCCATGTGCTTCAGCTGCGGGGCCTCCTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       95678 40 -    438239 CACATCACCCACCGACGTGCTTCAGCTGCGGGGCCTCCTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      133399 40 -    514179 CACATCACCCACCGACGTGCTTCAGCTGCGGGGCCTCCTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203783106 21 + 204313951 CACATC-ACCACCGATGTG------------------CTG
i calJac3.chr2             I 2030 I 18
s saiBol1.JH378155          15945519 22 +  16417988 CAAATCAACCACCAATGTG------------------CTT
i saiBol1.JH378155         C 0 I 18
s cebCap1.NW_016108158v1       22653 22 +    298490 CACATCACCCACCGATGTG------------------CTT
i cebCap1.NW_016108158v1   C 0 I 20
s aotNan1.NW_018503740v1    25341090 22 -  25620257 CACATCACCCGCCGATGTG------------------CTT
i aotNan1.NW_018503740v1   C 0 I 18
s otoGar3.GL873745           1834985 31 -   2165740 CAGGTCTCCTGCACACACGCCACATATAC--------CT-
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11677359 122 +  42124431 I

a score=12686.000000
s hg38.chr5_KI270793v1_alt      5457 2 +    126136 TA-
s panTro5.chr5             181271175 2 - 181907262 CA-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992691 2 - 183735486 CA-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       83243 2 +    698298 CA-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507398 2 - 121039945 CA-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460799 2 - 180051392 CA-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181191919 2 - 181584905 CA-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186773 2 -   1764207 CA-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201486 2 -  16742782 CA-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510687 2 -  91010382 CA-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       95718 2 -    438239 CA-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      133439 2 -    514179 CA-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203783145 2 + 204313951 CA-
i calJac3.chr2             I 18 C 0
s saiBol1.JH378155          15945559 2 +  16417988 CA-
i saiBol1.JH378155         I 18 C 0
s aotNan1.NW_018503740v1    25341130 2 -  25620257 CA-
i aotNan1.NW_018503740v1   I 18 C 0
s otoGar3.GL873745           1835016 2 -   2165740 -AA
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       22675 20 +    298490 I
e canFam3.chr34             11677359 122 +  42124431 I

a score=1086962.000000
s hg38.chr5_KI270793v1_alt      5459 124 +    126136 GCTGCTGTTTACTTGAAATTGACATACAAATCTCAGTTCTCTAAGAGAACCTGAATGCTCC-----CCACAGCCGTGGAAAAC-AGCCTGTTCAGGGCACTCGCAGTGGGGGAAAGTGCTCTGTCCTCTG
s panTro5.chr5             181271177 124 - 181907262 GCTGCTGTTTACTTGAAATTGACATACAAATCTCAGTTCTCTAAGAGAACCTGAATGCTCC-----CCACAGCCGTGGAAAAC-CGCCTGTTCAGGACACTCGCAGTGGGGGAAAGTGCTCTGTCCTCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992693 124 - 183735486 GCTGCTGTTTACTTGAAATTGACATACAAATCTCAGTTCTCTGAGAGAACCTGAATGCTCC-----CCACAGCCGTGGAAAAC-CGCCTGTTCAGGACACTCGCAGTGGGGGAAAGTGCTCTGTCCTCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       83245 124 +    698298 GCTGCTGTTTACTTGAAATTGACATACAAATCTCAGTTCTCTAAGAGAACTTGAATGCTCC-----CCACAGCCGTGGAAAAC-AGCCTGTTCAGGGCACTCACAGTGGGGGAAAGTGCTCTGTCCTCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507400 123 - 121039945 GCTGCTGTTTACTTGAAATTGACATACAAATCTCAGTTCTCTAAAAGAACCTGAATGCT-C-----CCACAGCCGTGGAAAAC-AGCCTGTTCAGGGCACTCGCAGTGGGAGAAAGTGTTCTGTCCTCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460801 124 - 180051392 GCTGCTGTTGACTTGAAATTGACATAAGAATCTCAGTTCTCTAAAAGAACCTGAACGCTCC-----CCACGGCCGTGGAAAAC-AGCCTGTTCAGGGCACTCGCAGTGGGGGAAAGTGTTCCGTCCTCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181191921 124 - 181584905 GCTGCTGTTGACTTGAAATTGACATAAGAATCTCAGTTCTCTAAAAGAACCTGAACGCTCC-----CCACGGCCGTGGAAAAC-AGCCTGTTCAGGGCACTCGCAGTGGGGGAAAGTGTTCCGTCCTCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186775 124 -   1764207 GCTGCTGTTGACTTGAAATTGACATAAGAATCTCAGTTCTCTAAAAGAACCTGAACGCTCC-----CCACGGCCGTGGAAAAC-AGCCTGTTCAGGGCACTCGCAGTGGGGGAAAGTGTTCCGTCCTCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201488 124 -  16742782 GCTGCTGTTTACTTGAAATTGACATAAGAATCTCAGTTCTCTAAAAGAACCTGAACGCTCC-----CCACGGCCGTGGAAAAC-AGCCTGTTCAGGGCACTCGCGGTGGGGGAAAGTGTTCCGTCCTCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510689 124 -  91010382 GCGGCTGTTTACTTGAAATTGACATAAGAATCTCAGTTCTCTAAAAGAACCTGAACGCTCC-----CCATGGCCGTGGAAAAC-AGCCTGTTCAGGGCACTCGCAGTGGGGGAAAGTGTTCCGTCCTCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       95720 124 -    438239 GCTGCTGTTCACTTGAAATTGACATAAGAATCTCAGTTCTCTAAAAGAACCTGAATGCTCC-----CCACGGCCGTGGAAAAC-AGCCTGTTCAGGGCACTCGCGGTGGGGGAAAGTGTTCCGTCCTCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      133441 123 -    514179 GCTGCTGTTTACTTGAAATTGACATAAGAATCTCAGTTCTCTAGAAGAACCTGAGCGCTCC-----CCACGGCCGTGGAAAAC-AGCCTGTTCAGGGCACTCGCAGTGGGGG-AAGTGTTCTGCCCTCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203783147 118 + 204313951 GCTGCTATTTGCCTGAAACTGACATATCAACCTCAATCCTCTGAAAGAACC-AACTGCTCC-----TCACAGCCGTGG-AAGC-ATCTTGTTCAGGGCACTCACAGTGGG-GAAAGGG-TCTGTC--CTG
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          15945561 107 +  16417988 GCTGCTATTTACTCGAAACTGACATATCAATCTCAATCCTCTGAAAGA--------------------ACAGCCATGG-AAGC-CTCTTGTTCAGGGCACTCACAGTGGG-GAAAGGGTTCTGTCCTCTG
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       22695 121 +    298490 GCTGCTATTTACTTGAAACTGACATACCAATCTCAATCCTCTCAAAGTACC-CACTGCTCC-----TCACAGCCGTGG-AAGT-GTCTTGTTCAGGGCACTCACAGTGGG-GAAAGGGTTCTGTCCTCTG
i cebCap1.NW_016108158v1   I 20 I 324
s aotNan1.NW_018503740v1    25341132 121 -  25620257 GCTGCTATTTACTTGAAACTGACATATCAATCTCAACCCTCTGAAAGAACC-GACTGCTCC-----TCACAGCCGTGG-AAGC-ATCTTGTTCAGGGCACTCACAGTGGG-GAAAGGGTTCTGTCCTCTG
i aotNan1.NW_018503740v1   C 0 I 1
s otoGar3.GL873745           1835018  93 -   2165740 GCTGCCACTTGCTTAAAATTA-------------------CTAAAAGTACTTGGGTGCCTTCTTGGCTATAGCCACAGAAAACAAGCTTGTTCAGGACATTTATAGTGAGGG------------------
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11677359 122 +  42124431 I

a score=48720.000000
s hg38.chr5_KI270793v1_alt      5583 5 +    126136 TGATT
s panTro5.chr5             181271301 5 - 181907262 TGATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992817 5 - 183735486 TGATT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       83369 5 +    698298 TGATT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507523 5 - 121039945 TGATT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460925 5 - 180051392 TGATT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181192045 5 - 181584905 TGATT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186899 5 -   1764207 TGATT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201612 5 -  16742782 TGATT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510813 5 -  91010382 TGATT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       95844 5 -    438239 TGATT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      133564 5 -    514179 TGATT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203783266 5 + 204313951 TGATT
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          15945669 5 +  16417988 TGATT
i saiBol1.JH378155         I 1 C 0
s aotNan1.NW_018503740v1    25341254 5 -  25620257 TGATT
i aotNan1.NW_018503740v1   I 1 C 0
e otoGar3.GL873745           1835111 0 -   2165740 C
e cebCap1.NW_016108158v1       22816 324 +    298490 I
e canFam3.chr34             11677359 122 +  42124431 I

a score=1146025.000000
s hg38.chr5_KI270793v1_alt      5588 120 +    126136 CTGTTGGTCTTTTGTTCTAACAAGATAGTTGGGATTCTG-TGATTCTTTTGTTTTTGATAAGGTCCTAGGTTC--AGAAGGAGGGGCAGCTTTCGAACAGCGGTGCATGGTAGGTCTGACCCT
s panTro5.chr5             181271306 120 - 181907262 CCGTTGGTCTTTTGTTCTAACAAGATAGTCGGGACTCTG-TGATTCTTTTGTTTTTGATAAGGTCCTCGGTTC--AGAAGGAGGGGCAGCTTTCGAACAGCGGTGCATGGTAGGTCTGACCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992822 120 - 183735486 CCGTTGGTCTTTTGTTCTAACAAGATAGTCGGGACTCTG-TGATTCTTTTGTTTTTGATAAGGTCCTCGGTTC--AGAAGGAGGGGCAGCTTTCGAACAGCGGTGCATGGTAGGTCTGACCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       83374 120 +    698298 CTGTTGGTCTTTTGTTCTAACAAGATAGTTGGGATTCTG-TGATTCTTTTGTTTTTGATAAGGTCCTTGGTTC--AGAAGGAGGGGCAGCTTTCGAACAGCGGTGCATGGTAGGTCTGACCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507528 122 - 121039945 CTGTTGGTCTTTTGTTCTAACAAGATAGTTGGGACTCTG-TGATTCTTTTGTTTTTGATAAGGTCCTAGGTTCTTAGTAGGAGGGGCAGGTGTTGAACAGCGGTGCATGGTAGGTCTGACCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179460930 120 - 180051392 CTGTTGGTCTTTTTTTCTAACAAGATAGTCGGGACTCTG-TGATTCTTCTGTTTTTGATAAGGTCCTAGGTTC--AGAAGGAGGGGCAGGTTTTGAACAGCAGTGCATGGTAGGTCTGACCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181192050 119 - 181584905 CTGTTGGTC-TTTTTTCTAACAAGATAGTCGGGACTCTG-TGATTCTTCTGTTTTTGATAAGGTCCTAGGTTC--AGAAGGAGGGGCAGGTTTTGAACAGCAGTGCATGGTAGGTCTGACCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      186904 120 -   1764207 CTGTTGGTCTTTTTTTCTAACAAGATAGTCGGGACTCTG-TGATTCTTCTGTTTTTGATAAGGTCCTAGGTTC--AGAAGGAGGGGCAGGTTTTGAACAGCAGTGCATGGTAGGTCTGACCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201617 120 -  16742782 CTGTTGGTCTTTTTTCCTAACAAGATAGTCGGGACTCTG-TGATTCTTCTGCTTTTGATAAGGTCCTAGGTTC--AGAAGGAGGGGCAGGTTTTGAACAGCAGTGCATGGTAGGTCTGACCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510818 120 -  91010382 CTGTTGGTCTTTTTTTCTAACAAGATAGTCGGGACTCTG-TGATTCTTCTGTTTTTGATAAGGTCCTAGGTTC--AGAAGGAGGGACAGGTTTTAAACAGCAGTGCATGGTAGGTCTGACCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       95849 120 -    438239 CTGTTGGTCTTTTTTTCTAACAAGATAGTCGGGACTCTG-TGATTCTTCTGTTTTTGATAAGGTGCTAGGTTC--AGAAGGAGGGGCAGGTTTTAAACAGCAGTGCATGGTAGGTCTGACCCT
i manLeu1.NW_012110441v1   C 0 T 4181
s colAng1.NW_012118799v1      133569 116 -    514179 CTGTTGGTCTTTTTTTCTAACAAGATAGTCGGGACTCTG-TGATTCTT----TTTTGACAAGGTTCTAGGTTC--AGAAGGAGGGGCAGGATTTGAACAGCAGTGCATGGTAGGTCTGACCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203783271 114 + 204313951 CTGCTGGTCTTTTGTTCTAACAAAATAGTCGGGACTC---TGATTCT---G-TTTTGATAATGTCCTAGGTTC--AGAAGGAGGCGCAGGTTTTGAACAGCGGTGCATGATACGTCTGACCCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15945674 116 +  16417988 CT-CTGGTCTTTTTTTCTAACAAGATAGTCGGGACTCTT-TGATTCT---GTTTTTGATAATGTCCTAGGTTC--AGAAGGAGGGGCAGGTTTTGAACAGCGGTGCATGATAGGTCTGACCCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       23140 117 +    298490 CTGCTGGTCTTTCTTTCTAACAAGATAGTCGGGACTCTG-GGATTCT---GTTTTTGATAATGTCCTAGGTTC--AGAAGGATGGGCAGGTTTTGAACAGCGGTGCATAATAGGTCTGACCCT
i cebCap1.NW_016108158v1   I 324 C 0
s aotNan1.NW_018503740v1    25341259 117 -  25620257 CTGCTGGCCTTTTTTTCTAACAAGATAGTCGGGACTCTG-TGATTCT---GTTTTTGATAATGTCCTAGGTTC--AGAAGGAGGGGCAGGTTTTGAACAGCGGCGCATGATAGGTCCGACCCT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1835111  91 -   2165740 -------CCTCATGTTTT-------------GGGCTGTGTTGATTCTTA-CTCTCTGATAA----CTGG--CC--AGAGGAGGGATCAGGCCCCG-ATGCTGGTGCA--GCAGGTCAGACCCT
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11677359 122 +  42124431 I

a score=1321993.000000
s hg38.chr5_KI270793v1_alt      5708 152 +    126136 AACAACAGAAGCAACCAGGGaacgtttataggcccctggccatgccgggcagt---ctgggagcttacagatattaac-tcaggtctccccaccacgacatgtcaacacagcattcttatccccccacttcacacaggaggactgaggtaagagaC
s panTro5.chr5             181271426 152 - 181907262 aacaacagaagcaaccagtgaacgtttataggcccctggccatgctgggcagt---ctgggagcttacagatattaac-tcaggtctccccaccatgacatgtcaacacagcattcttatccccccacttcacataggaggactgaggtaagagaC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182992942 152 - 183735486 aacaacagaagcaaccagtgaacgtttataggcccctggccatgctgggcagt---ctgggagcttacagatattaac-tcaggtctccccaccatgacaggtcaacacagcattcttatccccccacttcacataggaggactgaggtaagagaC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       83494 152 +    698298 AACAACAGAAGCAACCAGGGaacgtttataggcccctggccatgccgggcagt---ctgggagcttacagatagtaac-tcaggtctccccaccacgacatgtcaacacagcattcttatccccccacttcacacaggaggactgatgtaagagaC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507650 152 - 121039945 AACAACAGAaataaccagtgaacgtttataggcccctggccatgctgggcagt---ctgggagcttacagatattaac-tcaggtctccccaccacgacatgtcaacacggcattcttatccccccacttcacacaggaggactgaggtaagagaC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179461050 152 - 180051392 AACAACAGAaataaccagtgaacgtttataggcccctggccatgccgggcagt---ctgggagcttacagatatgaac-tcaggtctccccaccacgacatgtccacatggcattcttatccccccacttcacacaggaggactgaggtaagagaC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181192169 152 - 181584905 AACAACAGAaataaccagtgaacgtttataggcccctggccatgccgggcagt---ctgggagcttacagatatgaac-tcaggtctccccaccacgacatgtccacatggcattcttatccccccacttcacacaggaggactgaggtaagagaC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      187024 152 -   1764207 AACAACAGAaataaccagtgaacgtttataggcccctggccatgccgggcagt---ctgggagcttacagatatgaac-tcaggtctccccaccacgacatgtccacatggcattcttatccccccacttcacacaggaggactgaggtaagagaC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201737 152 -  16742782 AACAACAGAaataaccagtgaacatttataggtccctggccatgccgggtagt---ctgggagcttacagatatgaac-tcaggtctccccaccacgacatgtccacacggcattcttatcccctcacttcacacaggaggactgaggtaacagaC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90510938 152 -  91010382 AACAACAGAaataaccagtgaacgtttataggtccctggccatgccgggcagt---ttgggagcttacagatatgaac-tcaggtctccccaccacgacatgtccacacggcattcttatccccccacttcacacaggaggactgaggtaacagaC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       91788 152 -    438239 AACAACAGAaataaccagtgaacgtttataggcccctggccatgccgggcagt---ctgggagcttacagatatgaac-tcaggtctccccaccacgacatgtccacatggcattcttatccccccacttcacacaggaggactgaggtaacagaC
i manLeu1.NW_012110441v1   T 4181 C 0
s colAng1.NW_012118799v1      133685 147 -    514179 AACAACAGAaataaccagtgaacgtttataggcccctggccatgccgggcagt---ctgggagcttacagatattaac-tcaggtctccccaccacgacatgtccacacggcattcttatcccc-catttcacacaggaggactgaggta----AC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203783385 118 + 204313951 AACAACAGAAACAGCCAGTGAA--------------TGGCCATGCTGGGC--------------------ATATTAAC-TCGGGTCTCCCCACC---ACAGGTCAACACAGACTTCGTATCCCCCCAGTTCACACAGGAGGGCTGAGGTAAGAGGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15945790 135 +  16417988 AACAACAGAAATAGCCAGAGAA--------------TGGCCAGGCTGGGCAGC---CCAGGAGCTTACAGATACTAAC-TCAGGTCTCCCCACC---ACATGTCAACACAGCATTCGTATCCCCCTACTTCACACAGGAGGACTGAGGTAAGAGGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       23257 126 +    298490 AACAGCAGAAATAGCCAGCGAA--------------TGGCCGTGCTGGGCAGC---CCAGG---------ATATTAAC-TCGGGTCTCCCCACC---ACATGTCAACACAGCATTCGTATCCCCCCACTTCACACAGGAGGACTGAGGTAAGAGGC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25341376 133 -  25620257 AACAGCAGAAATAGCCAGTG-A--------------TGGCCATGCTGGGCAGC---CCGGGAGCTTACAGATGTTAAC-TAGGGTCTCCCCACC---ACATGTCAACACAGCATTCGTATCCCCC-ACTTCACACGGGAGGACTGAGGTAAGAGGC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1835202 131 -   2165740 AACTAGGGAAATA-CCTGTGAATG-CCAGGAGCCCTGGGTCATTCCAGGTGCTGTCCTGGGAGTTCACACATGGTGACACCACGTCTCCTTACAACACCCTGT----------------------GACCTTAAAGTGGGACCCTGA-GTAAGAGAT
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11677359 122 +  42124431 I

a score=9468240.000000
s hg38.chr5_KI270793v1_alt      5860 1022 +    126136  
s panTro5.chr5             181271578 1022 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182993094 1022 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       83646 1022 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120507802 1009 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179461202  984 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181192321  984 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      187176  983 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      201889  980 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90511090  980 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       91940  982 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      133832  981 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203783503  951 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15945925  943 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       23383  944 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25341509  958 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1835333  897 -   2165740  
i otoGar3.GL873745         C 0 I 295
s canFam3.chr34             11677481  972 +  42124431  
i canFam3.chr34            I 122 C 0

a score=89667.000000
s hg38.chr5_KI270793v1_alt      6882 14 +    126136 TGAAATAAGCCAGC
s panTro5.chr5             181272600 14 - 181907262 TGAAATAAGCCAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994116 14 - 183735486 TGAAATAAGCCAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       84668 14 +    698298 TGAAATAAGCCAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120508811 14 - 121039945 TGAAATAAGCCAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462186 14 - 180051392 TGAAATAAGTCAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181193305 14 - 181584905 TGAAATAAGCCAGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      188159 14 -   1764207 TGAAATAAGCCAGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      202869 14 -  16742782 TGAAATAAGCCAGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512070 14 -  91010382 CGAAATAAGCCAGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       92922 14 -    438239 TGAAATCAGCCAGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      134813 14 -    514179 TGAAATAAGCCAGC
i colAng1.NW_012118799v1   C 0 C 0
s canFam3.chr34             11678453 14 +  42124431 TGAAACGGACCATC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25342467  0 -  25620257 C
e otoGar3.GL873745           1836230 295 -   2165740 I
e cebCap1.NW_016108158v1       24327  0 +    298490 C
e saiBol1.JH378155          15946868  0 +  16417988 C
e calJac3.chr2             203784454  0 + 204313951 C

a score=2310055.000000
s hg38.chr5_KI270793v1_alt      6896 259 +    126136 AACACACA----------------------CTGACCAACCAACTGTATAAACTTATTTGCAATAACTCCATGTCATTACCAGGAAAAGTAGAAAAATGAAAC--GTTCTCATCTGTGAAGTTCTCTGGGCCCCACGCGGTGAGACGGTCGTTTAT--------GGAACCCACATGTG-----------ACGCAACTAAGCACagctaatatctaccgaggcctcagcgtgcagcaagctgagtgatgtgcacgcacaatttcatttaatccacacgc-----------------------cgccctacagggtgagaaccatcag--
s panTro5.chr5             181272614 269 - 181907262 AACACACA----------------------CTGACCAACCAACTTCATAAACTCATTTGCAATAAATACATGTCGTTACCAGGAAAAGTAGAAAAATGAAAC--GTTCTCATCTGTGAAGTTCTCTGGGCTCCACGTGGTGAGACGGTCGTTTAT--------GGAACCTACATGTGCCGCAG-TGTGACACAACTAAGCACGgctaatatctactgaggcctcagcgtgcagcaagctgagtgatgtgcatgcacaatttcatttaatccacacgc-----------------------cgccctacagggtgagaaccatcag--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994130 269 - 183735486 AACACACA----------------------CTGACCAACCAACTTCATAAACTCATTTGCAATAAATACATGTCGTTACCAGGAAAAGTAGAAAAATGAAAC--GTTCTCATCTGTGAAGTTCTCTGGGCTCCACGTGGTGAGACGGTCGTTTAT--------GGAACCTACATGTGCCGCAG-CGTGACACAACTAAGCACGgctaatatctaccgaggcctcagcgtgcagcaagctgagtgatgtgcatgcacaatttcatttaatccacaggc-----------------------cgccctacagggtgagaaccatcag--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       84682 269 +    698298 AACACACA----------------------CTGACCAACCAACTTCATAAACTCATTTGCAATAAATACATGTCGTTACCAGGAAAAGTAGAAAAATGAAAC--GTTCTCATCTGTGAAGTTCTCTGGGCCCTACGTGGTGAGACGGTCGTTTAT--------GGAACCCACATGTGCCGCAG-CGTGACACAACTAAGCACagctaatatctaccgaggcctcagcgtgcagcaagctgagtgatgtgcacacacaatttcatttaatccacacgc-----------------------cgccctacagggtgagaaccatcag--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120508825 271 - 121039945 AACACACA----------------------CTGACCAACGAACTTAATAAAGGCATTTGCAATAAATACATGTCATTACCAGCAAAAGTAGAAAAATGAAACATGTTCTTATCTGTGAAGTTCTCTGGGCCCCACGTGGTGAGATGATTGTTTAT--------GGAACCCACATGTGCCGCAG-CGTGATGCAACTAAGCACagctaatatctactgaggcctcggtgtgcagcaagctgagtgatttgcacgcacaatttcatttaatccacatgc-----------------------cgccctatggggtgagaaccatcaG--
i nomLeu3.chr6             C 0 I 177
s rheMac8.chr6             179462200 269 - 180051392 AACACACA----------------------CTGCCCAACAAACTTCATGAACGCATTTGCAATAAACAC--GTTGTTACCAGGAAAAGTAGAAAAATGAAGCACGTTCTCATCTATGAAGTTCTCTGGGCCTCACGCGGTGAGATGATCGTTTAG--------GGAAGCCACATGTGCCATGG-CGTGATGCAACTAAGCACagctaatatctactgaggcctcagtgtgcaccaagctgagtgatttacacacacaatttcatttaatccacacgc-----------------------cgctctacagggtgagaactgtcag--
i rheMac8.chr6             C 0 I 2
s macFas5.chr6             181193319 269 - 181584905 AACACACA----------------------CTGACCAACAAACTTCATGAACGCATTTGCAATAAACAC--GTTGTTACCAGGAAAAGTAGAAAAATGAAGCACGTTCTCATCTATGAAGTTCTCTGGGCCTCACGCGGTGAGATGATCGTTTAG--------GGAAGCCACATGTGCCATGG-CGTGATGCAACTAAGCACagctaatatctactgaggcctcagtgtgcaccaagctgagtgatttacacacacaatttcatttaatccacacgc-----------------------cgctctacagggtgagaactgtcag--
i macFas5.chr6             C 0 I 2
s macNem1.NW_012012389v1      188173 269 -   1764207 AACACACA----------------------CTGACCAACAAACTTCATGAACGCATTTGCAATAAACAC--GTTGTTACCAGGAAAAGTAGAAAAATGAAGCACGTTCTCATCTATGAAGTTCTCTGGGCCTCACGCGGTGAGATGATCGTTTAG--------GGAAGCCACATGTGCCATGG-CGTGATGCAACTAAGCACagctaatatctactgaggcctcagtgtgcaccaagctgagtgattgacacacacaatttcatttaatccacacgc-----------------------cgctctacagggtgagaactgtcag--
i macNem1.NW_012012389v1   C 0 I 2
s cerAty1.NW_012009470v1      202883 269 -  16742782 AACACACA----------------------CTGACCAACAAACTTCATAAACGCATTTGCAATAAACAC--GTCGTTACCAGGAAAAGTAGAAAAATGAAGCACGTTCTCATTTATGAAGTTCTCTGGGCCTCATGCGGTGAGATGATCGTTTAG--------GGAAGCCACATGTGCCATGG-CGTGATGCAACTAAGCACagctaatctctactgaggcctcagtgtgcaccaagctgagtgatttacacacacaattccatttaatccacacgc-----------------------cgctctacagggtgagaactgtcag--
i cerAty1.NW_012009470v1   C 0 I 2
s chlSab2.chr4              90512084 269 -  91010382 AACACACA----------------------CTGACCAACAAACTTCATAAACGCATTTGCAATAAACAC--GTCGTTACCAGGAAAAGTGGAAAAATGAAGCATGTTCTCATCTATGAAGTTCTCTGGGCCTCACGCGGTGAGATGATCGTTTAG--------GGAAGCCACATGTGCCATGG-CGTGATGCAACTAAGCACagctaatctctactgaggcctcagtgtgcaccaagctgagtgatttacacacacaatttcatttaatccacacgc-----------------------cgctccacacggtgagaactgtcag--
i chlSab2.chr4             C 0 I 2
s manLeu1.NW_012110441v1       92936 262 -    438239 AACACACA----------------------CTGACCAAC--------TAAACGCATTTGCAATAAACACATGTCGTTA-CAGGAAAAGTAGAAAAATGAAGCATGTTCTCATCTATGAAGTTCTCTGGGCCTCACGCGGTGAGATGATCGTTTAG--------GGAAGCCACATGTGCCACGG-CGTGATGCAACCAAGCACagctaatctctactgaggcctcagtgtgcaccaagctgagtgatttacacacacaattccatttaatccacacgc-----------------------cgctctacagggtgagaactgtcag--
i manLeu1.NW_012110441v1   C 0 I 2
s colAng1.NW_012118799v1      134827 269 -    514179 AACACACG----------------------CTGACCAACAAACTTCATAAACGCATTTACAATAAACAC--GTAGTTACCAGGAAAAGTAGAAAAACGAAGCATGTTCTCATCTATGACGTTCTCTGGGCCTCACGCGGTGAGATGAGCGTTTAG--------GGAAGCCACATGTGCCATGG-CGTGATGCAACCAAGCACagctaatatctactgaggtctcagtgtgcaccaagctgagtgatttacacatacaatttcatttaatccacacgc-----------------------cgctctacagggtgagagctgtcag--
i colAng1.NW_012118799v1   C 0 I 2
s calJac3.chr2             203784454 225 + 204313951 ----------------------------------CCAACCGACTTAACCAACACGTTTGCAATAAACACATGT-GTTACCAGGAAAAGTAGAAAAATGAGACATGCTCTCATTTGTGAAGTTCTCTGGGTCCCATGCGGTGAGATGAC------------------------------------------GCGACTGGGCACagctggtacctactgaggcctccgtgtgcaccacactgagtgattcacacacacagtgtcacttaatccacacgc-----------------------cgccctacagggtgagaaccctcag--
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          15946868 257 +  16417988 ----------------------------------CCAACCAACTTAATAAACACACTTGCAATAAATACATGT-GTTACCAGCAAAAGTAGTAAAATGAGACACGTTCTCATTTGTGAAGTTCTCTGGG-CCCACGCGGTGAGATGACTGTTTAG--------GGAAGCCACGTGTGCCGCAG-CGTGATGGGACTGAGCATagctggtacctatggaggcctccatgtgcaccacgctgagtgactctcacacacaacctcacttaatccacacgc-----------------------cgccctacagggtgagaaccattgg--
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       24327 258 +    298490 ----------------------------------CCAACCAACTTAATAAACACATTTGCAATAAACACATGC-GTTACCAGGAAAAGTAGTAAAATGAGACACGTTCTCATTTGTGAAGTTCTCTGGGCCCCACGCCGTGAGAAGACCGTTTAG--------GGAAGCCACGTGTGCCGCAG-CGTGACGTGACTGAGCACGgctggtacctactgaggcctccgtgtgcaccaggctgagtgattcacacacacaatttcacttaatccacacac-----------------------cgccctacagggtgagaaccatagg--
i cebCap1.NW_016108158v1   C 0 I 1
s aotNan1.NW_018503740v1    25342467 255 -  25620257 ----------------------------------CCAACCAAC-TAATAAAGACGTTTGCAATAAATACATGC-GTTACCAGGAAAAGCGGTAAAATGAGAC--GTTCTCATTTGCGAAGTTCTCTGGGCCCCACGCGGTGAGATGACCGTTTAG--------GGAAGCCCCGTGTGCCGCAG-CGTGACGCGACTGGGCACagccggtacctactgaggcctccgtgtgcaccacgctgagtgattcacacacacaatttcacttaatccacacac-----------------------cgccctagcgggtgagaaccatcag--
i aotNan1.NW_018503740v1   C 0 I 1
s otoGar3.GL873745           1836525 259 -   2165740 AACACACAGTAAATTAACCCACCGTATGTTCTGATCAACCAACTTAATAAACACATTTGCAATGAATACATGC------CAGGAAAGGCACAGAAGTGAAAGGTGCACTCATCTGGGAAGGGCAAT--GTTTTGCACAGTAAAACATTCATGTAGCAAATGTAAGATGTCACATGTACCAC------------------CATTGTTAA-----------------GAGAGTGGAGAACAAAGAGATTCAtacatgtaatctcttttcatctgcacac-----------------------agccctggagggtaagaacaacgag--
i otoGar3.GL873745         I 295 I 2
s canFam3.chr34             11678467 264 +  42124431 AATATGAA----------------------TCAAC--ACCAACTTAACAAATGCACCTGCAATGGCCATATGCCACTACCAGGAAGAGCACAAAGACAGAAG-TGTTCT-AGGTAGGAGG--CTCCGTGTCTCACACTG-GAAATGGCTATTCGGCATG----ACATGTCACGTTCACAACAGTCCTAATGGCACTGAGGATGGCCTGTATCTACTGAGTTCTc------------------------------actatttcattcagtctgcacacaatccaggtgtgacacacaacctcacaccacagagtaagagctattactg
i canFam3.chr34            C 0 C 0

a score=1300727.000000
s hg38.chr5_KI270793v1_alt      7155 133 +    126136 cccccc---cttcacagatgagaaagctgaggcCTGGGAACGGGGAAAGATGAGGCAGCACTGGGTGTAGCCTGGGCTAG-GTCCGCATCTGACTTGGAGCAGACT--CCCGAGCTGGTGTCAGACGTGGCCTCCATAA
s panTro5.chr5             181272883 134 - 181907262 cccccc--acttcacagatgagaaagctgaggcctgggaacggggaaAGATGAGGCAGCACTGGGTGTAGCCTGGGCTAG-GTCCGCATCTGACTTGGAGCAGACT--CCCGAGCTGGTGTCAGACGTGGCCTCCATAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994399 134 - 183735486 cccccc--acttcacagatgagaaagctgaggcctgggaacggggaaAGATGAGGCAGCACTGGGTGTAGCCTGGGCTAG-GTCCGCATCTGACTTAGAGCAGACT--CCCGAGCTGGTGTCAGACGTGGCCTCCATAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       84951 136 +    698298 ccccccccccttcacagatgagaaagctgaggcctgggaacggggaaAGATGAGGCAGCACTGGGTGTAGCCTGGGCTAG-GTCCGCATCTGACTTGGAGCAGACT--CCCGAGCTGGTGTCAGACGTGGCCTCCATAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509273 133 - 121039945 cccccc---cttcacagatgagaaagctgaggcctgggaagggggaaagaTGAGGCAGCACTGGGTGCAGCCTGGGCTGG-GTCCGCATCTGACTTGGAGCAGACT--CCCCAGCTGGTGTCAGACGCGGCCTCCATAA
i nomLeu3.chr6             I 177 C 0
s rheMac8.chr6             179462471 133 - 180051392 tctgcc---cttcacagatgagaaagctgaggtctgggaaggGGGAAAGAGGAGGCAGCACTGGGTGCAGCCTGGGTGGG-GTCCGCATCTGACTTGGAGCAAACT--CCCAAGCTGGTGTCAGACGCGGCCTCCATAA
i rheMac8.chr6             I 2 C 0
s macFas5.chr6             181193590 133 - 181584905 tctgcc---cttcacagatgagaaagctgaggtctgggaaggGGGAAAGAGGCGGCAGCACTGGGTGCAGCCTGGGTGGG-GTCCGCATCTGACTTGGAGCAAACT--CCCAAGCTGGTGTCAGACGCGGCCTCCATAA
i macFas5.chr6             I 2 C 0
s macNem1.NW_012012389v1      188444 133 -   1764207 tctgcc---cttcacagatgagaaagctgaggtctgggaaggGGGAAAGAGGAGGCAGCACTGGGTGCAGCCTGGGTGGG-GTCCGCATCTGACTTGGAGCAAACT--CCCAAGCTGGTGTCAGACGCGGCCTCCTTAA
i macNem1.NW_012012389v1   I 2 C 0
s cerAty1.NW_012009470v1      203154 133 -  16742782 tctgcc---cttcgcagatgagaaagctgaggcctgggaaggGGGAAAGAGGAGGCAGCACTGGGTGCAGCTTGGGCAGG-GTCCACATCTGACTTGGAGCAGCCT--CCCAAGCTGGTGTCAGACGCGGCCTCCATAA
i cerAty1.NW_012009470v1   I 2 C 0
s chlSab2.chr4              90512355 132 -  91010382 tctgcc---cttcgcagatgagaaagctgaggcctgggaaggGGG-AAGATGAGGCAGCACTGGGTGCAGCCTGGGCGGG-GTCCGCATCTGACTTGGAGCAGACT--CCCAAGCTGGTGTCACACGCGGCCTCCATAA
i chlSab2.chr4             I 2 C 0
s manLeu1.NW_012110441v1       93200 133 -    438239 tctgcc---cttcgcagatgagaaagctgaggcctgggaaggGGGAAAGAGGAGGCAGCACTGGGTGCAGCCTGGGCAGG-GTCCGCATCTGACTTGGAGCAAACT--CCCAAGCTGGTGTCAGACGCGGCCTCCATAA
i manLeu1.NW_012110441v1   I 2 C 0
s colAng1.NW_012118799v1      135098 133 -    514179 tctgcc---cttcacagatgagaaagctgaggtctgggaaggGGGAAAGATGAAGCAGCACTGGGTGCAGCCTGGGCTAG-GTCCGCATCTGACTTGGAGCAGCCT--CCCAAGCTGGTGTCAGACGCGGCCTCCATAA
i colAng1.NW_012118799v1   I 2 C 0
s calJac3.chr2             203784680 128 + 204313951 gcccca---cttcgcagatgagaaagctgaggcctg---a-ggggAACGATGAGGCAGCACTGGGTGCAGCCTGG-CTGG-GCCCACGTCTGACTTGGAGCAGACT--CCCGAGCTGGTGCCAGACACAGCCTCCATAA
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          15947126 131 +  16417988 gcccca---ctttgcagatgagaaagctgaggcctgggaa-ggggaagGATGAGGCCACACTCGGTGTAACCTGG-CTGG-GCCCACGTCTGACTTGGAGCAGACT--CCCGAGCTGCTGTCAGACACAGCCTCCATAA
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1       24586 131 +    298490 gcccca---attcgcagatgagaaagctgaggcctggaaa-ggggaagGATGAGGCCACACTGGGTGCAGCCTGG-CTGG-GCCCACGTCTGACTTGGAGCAGACT--CCCGAGCTGCTGTCAGACACAGCCTCCATAA
i cebCap1.NW_016108158v1   I 1 I 32
s aotNan1.NW_018503740v1    25342723 129 -  25620257 gtccca---cttcgcagatgagaaagctgaggcctgggaa-ggGGAACGATGAGGCAGCGCTGGGTGCAGCCCAG---GG-GCCCACGTCTGACCTGGAGCAGACT--CCCGAGCTGGTGTCAGACACAGCCTCCATAA
i aotNan1.NW_018503740v1   I 1 C 0
s otoGar3.GL873745           1836786 134 -   2165740 ctccca---aatcacagtttagaaagctgaggactgggtgggtagaaggatgc--cagcaaagacagcagcctgggctggagcctgcacctggctcagagccacattgctggaccctgcatcagacgtgctctctacac
i otoGar3.GL873745         I 2 I 7
s canFam3.chr34             11678731 129 +  42124431 ttccca---ccatacagatgagaaaccag----ctgcacagactgagagaTGACCCAGCACAGGGGGAAACTGGGCTGAG-ACTCACAGGTGACTCTGAGCAGGGC--CCCCACCCCGTGTCAGGGGCACACTCTGTGA
i canFam3.chr34            C 0 C 0

a score=176393.000000
s hg38.chr5_KI270793v1_alt      7288  61 +    126136 TGCT---------------------------------------------------------------------------------C--------AGGCACCAGGCTCAGGGCAG-------G----------------CGCA----TCCCAC----------------GGTTCT--GTCCGGGCCAATCA-GGCCA
s panTro5.chr5             181273017 142 - 181907262 TGCTGAGGGACCAGGCTCAGGGCAGGCACATCCCACGGTTCTGTCCGGGCCAATCAGGCCATGCAGACGCGGCCTCCATAATGCTC--------AGGCATCTGGCTCAGGGCAG-------G----------------CGCA----TCCCAC----------------GGTTCT--GTCCGGGCCAATCA-GGCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994533  61 - 183735486 TGCT---------------------------------------------------------------------------------G--------AGGGACCAGGCTCAGGGCAG-------G----------------TGCA----TCCCAC----------------GGTTCT--GTCCGGGCCAATCA-GGCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85087  61 +    698298 TGCT---------------------------------------------------------------------------------C--------AGGCATCGGGCTCAGGGCAG-------G----------------CGCA----TCCCAC----------------GGTTCT--GTCCGGGCCAATCA-GGCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509406   4 - 121039945 TGCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462604  36 - 180051392 TGCT---------------------------------------------------------------------------------C--------AGGCACCAGGCTCGGGGCAG-------G----------------CGCA----TCCCAC--------------------------------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181193723  61 - 181584905 TGCT---------------------------------------------------------------------------------C--------AGGCACCAGGCTCGGGGCAG-------G----------------CGCA----TCCCAC----------------GGTTCT--GTCAGGGCCAATCA-GGCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      188577  36 -   1764207 TGCT---------------------------------------------------------------------------------C--------AGGCACCAGGCTCGGGGCAG-------G----------------CGCA----TCCCAC--------------------------------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      203287  61 -  16742782 TGCT---------------------------------------------------------------------------------C--------AGGCACCAGGCTCGGGGCAG-------G----------------CGTA----TCCCAT----------------GGTGTT--GTCAGGGCCAATCA-GGCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512487  61 -  91010382 TGCT---------------------------------------------------------------------------------C--------AGGCACCAGGCTCGGGGCAG-------G----------------CGCA----TCCCAC----------------GGTGTT--GTCAGGGCCAATCA-GGCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93333  61 -    438239 TGCT---------------------------------------------------------------------------------C--------AGGCACCAGGCTCGGGGCAG-------G----------------CGTA----TCCCAT----------------GGTGTT--GTCAGGGCCAATCA-GGCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135231  62 -    514179 TGCT---------------------------------------------------------------------------------C--------AGGCACCAGGCTCGGGGTAG-------G----------------CGTA----TCCCAC----------------GGTTCT--GTCAGGGCCAGTTAGGGTTA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203784808  60 + 204313951 TGTT---------------------------------------------------------------------------------C--------AAGCCCCATGCTCAGGGCAG-------G----------------CA-A----TCCCAC----------------AGTCCT--GTCGGGGCCAATCA-GGCCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15947257  61 +  16417988 TGTT---------------------------------------------------------------------------------C--------AGGCCCCACGCTCGGGGCAG-------G----------------CACA----TCCCAC----------------AGTCCT--GTCAAGGCCAATCA-GGCCA
i saiBol1.JH378155         C 0 T 79
s aotNan1.NW_018503740v1    25342852  61 -  25620257 TGTT---------------------------------------------------------------------------------C--------AGGCCCCACGCTCGGGGCAG-------G----------------CACC----TCCCAC----------------AGTCCT--GTCAAGGCCAATCA-GGCCA
i aotNan1.NW_018503740v1   C 0 I 793
s otoGar3.GL873745           1836927  87 -   2165740 tgtt---------------------------------------------------------------------------------CCAGGGCAGGAGTTCCAGCCACAGGCAAG-------GTTTACACAACAACCCCTGAA----CCCCAC----------------CACCCCAGGTGACTGCCTGCCA-GGACA
i otoGar3.GL873745         I 7 C 0
s canFam3.chr34             11678860  87 +  42124431 -------------------------------------------------------------------------------------------AGGGGGCAGGAAGTCATGAGCAGAAAGTTTG----------------CACAACTTTCCCACTTGCCATCACCTGGGTGATTTC--TTCCTTGCTTACGAGGACCA
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1       24717  32 +    298490 I

a score=-2448.000000
s hg38.chr5_KI270793v1_alt      7349 1 +    126136 -T
s panTro5.chr5             181273159 1 - 181907262 -T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994594 1 - 183735486 -T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85148 1 +    698298 -T
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181193784 1 - 181584905 -T
i macFas5.chr6             C 0 T 80
s cerAty1.NW_012009470v1      203348 1 -  16742782 -C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512548 1 -  91010382 -T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93394 1 -    438239 -C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135293 1 -    514179 -T
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1837014 1 -   2165740 -T
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11678947 1 +  42124431 A-
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25342913 793 -  25620257 I
e cebCap1.NW_016108158v1       24717 32 +    298490 I
e saiBol1.JH378155          15947318 79 +  16417988 T
e calJac3.chr2             203784868 0 + 204313951 C
e nomLeu3.chr6             120509410 0 - 121039945 C
e macNem1.NW_012012389v1      188613 0 -   1764207 C
e rheMac8.chr6             179462640 0 - 180051392 C

a score=4500.000000
s hg38.chr5_KI270793v1_alt      7350 1 +    126136 G
s panTro5.chr5             181273160 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994595 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85149 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      203349 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512549 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93395 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135294 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1837015 1 -   2165740 G
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11678948 1 +  42124431 G
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25342913 793 -  25620257 I
e cebCap1.NW_016108158v1       24717 32 +    298490 I
e saiBol1.JH378155          15947318 79 +  16417988 T
e calJac3.chr2             203784868 0 + 204313951 C
e nomLeu3.chr6             120509410 0 - 121039945 C
e macNem1.NW_012012389v1      188613 0 -   1764207 C
e macFas5.chr6             181193785 80 - 181584905 T
e rheMac8.chr6             179462640 0 - 180051392 C

a score=107485.000000
s hg38.chr5_KI270793v1_alt      7351 29 +    126136 CAGACGCAGCCTCCATAATGCTCAGGCAT---
s panTro5.chr5             181273161 29 - 181907262 CAGACGCGGCCTCCATAATGCTCAGGCAT---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994596 29 - 183735486 CAGACGCGGCCTCCATAATGCTCAGGCAT---
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85150 29 +    698298 CAGACGTGGCCTCCATAATGCTCAGGCAC---
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509410  7 - 121039945 ----------------------CAGGCAC---
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181193705 29 - 181584905 CAGACGCGGCCTCCATAATGCTCAGGCAC---
i macFas5.chr6             T 80 C 0
s cerAty1.NW_012009470v1      203350 29 -  16742782 CAGATGCGGCCTCCATAATGCTCAGGCAC---
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512550 29 -  91010382 CAGATGCGGCCTCCACAATGCTCAGGCAC---
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93396 29 -    438239 CAGATGCGGCCTCCATAATGCTCAGGCAC---
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135295 29 -    514179 CAGATGCGGCCTCCATAATGCTCAGGCAC---
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203784868  6 + 204313951 CAGGCA--------------------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15947239 29 +  16417988 CAGACACAGCCTCCATAATGTTCAGGCCC---
i saiBol1.JH378155         T 79 I 50
s aotNan1.NW_018503740v1    25343706 29 -  25620257 CAGACACAGCCTCCATAATGTTCAGGCCC---
i aotNan1.NW_018503740v1   I 793 C 0
s otoGar3.GL873745           1837016 16 -   2165740 -------TGCCTTC------CCCCAGCAC---
i otoGar3.GL873745         C 0 I 4
s canFam3.chr34             11678949 30 +  42124431 CACCCACATCAGCAACACTG--CAGGAAGCCT
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1       24717 32 +    298490 I
e macNem1.NW_012012389v1      188613  0 -   1764207 C
e rheMac8.chr6             179462640  0 - 180051392 C

a score=21844.000000
s hg38.chr5_KI270793v1_alt      7380 8 +    126136 CGGGCTCA
s panTro5.chr5             181273190 8 - 181907262 CTGGCTCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994625 8 - 183735486 CTGGCTCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85179 8 +    698298 CAGGCTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509417 8 - 121039945 CACGCCCG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181193734 8 - 181584905 CAGGCTCG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      203379 8 -  16742782 CAGGCTCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512579 8 -  91010382 CAGACTCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93425 8 -    438239 CAGGCTCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135324 8 -    514179 CAGGCTCG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15947318 6 +  16417988 --CGGGCA
i saiBol1.JH378155         I 50 C 0
s aotNan1.NW_018503740v1    25343735 8 -  25620257 CACGCTCG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1837036 3 -   2165740 CAA-----
i otoGar3.GL873745         I 4 I 1
s canFam3.chr34             11678979 8 +  42124431 CTCACTCA
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1       24717 32 +    298490 I
e calJac3.chr2             203784874 0 + 204313951 C
e macNem1.NW_012012389v1      188613 0 -   1764207 C
e rheMac8.chr6             179462640 0 - 180051392 C

a score=2660.000000
s hg38.chr5_KI270793v1_alt      7388 1 +    126136 -G
s panTro5.chr5             181273198 1 - 181907262 -G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994633 1 - 183735486 -G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85187 1 +    698298 -G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509425 1 - 121039945 -G
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181193742 1 - 181584905 -G
i macFas5.chr6             C 0 I 42
s cerAty1.NW_012009470v1      203387 1 -  16742782 -G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512587 1 -  91010382 -G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93433 1 -    438239 -G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135332 1 -    514179 -G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203784874 1 + 204313951 -G
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15947324 1 +  16417988 -G
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       24749 1 +    298490 -G
i cebCap1.NW_016108158v1   I 32 C 0
s aotNan1.NW_018503740v1    25343743 1 -  25620257 -G
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11678987 1 +  42124431 T-
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1837039 1 -   2165740 I
e macNem1.NW_012012389v1      188613 0 -   1764207 C
e rheMac8.chr6             179462640 0 - 180051392 C

a score=22035.000000
s hg38.chr5_KI270793v1_alt      7389 2 +    126136 GG
s panTro5.chr5             181273199 2 - 181907262 GG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994634 2 - 183735486 GG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85188 2 +    698298 GG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509426 2 - 121039945 GG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181193785 2 - 181584905 GG
i macFas5.chr6             I 42 C 0
s cerAty1.NW_012009470v1      203388 2 -  16742782 GG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512588 2 -  91010382 GG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93434 2 -    438239 GG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135333 2 -    514179 GG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203784875 2 + 204313951 GG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15947325 2 +  16417988 GG
i saiBol1.JH378155         C 0 T 48
s cebCap1.NW_016108158v1       24750 2 +    298490 GG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25343744 2 -  25620257 GG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1837040 2 -   2165740 AG
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11678988 2 +  42124431 GG
i canFam3.chr34            C 0 C 0
e macNem1.NW_012012389v1      188613 0 -   1764207 C
e rheMac8.chr6             179462640 0 - 180051392 C

a score=25923.000000
s hg38.chr5_KI270793v1_alt      7391 4 +    126136 CAGG
s panTro5.chr5             181273201 4 - 181907262 CAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994636 4 - 183735486 CAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85190 4 +    698298 CAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509428 4 - 121039945 CAGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181193787 4 - 181584905 CAGG
i macFas5.chr6             C 0 T 42
s cerAty1.NW_012009470v1      203390 4 -  16742782 CAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512590 4 -  91010382 CAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93436 4 -    438239 CAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135335 4 -    514179 CAAG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15947279 4 +  16417988 CAGG
i saiBol1.JH378155         T 48 C 0
s cebCap1.NW_016108158v1       24752 4 +    298490 CAGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25343746 4 -  25620257 CAGG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1837042 4 -   2165740 CCGG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11678990 3 +  42124431 CAC-
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203784877 0 + 204313951 C
e macNem1.NW_012012389v1      188613 0 -   1764207 C
e rheMac8.chr6             179462640 0 - 180051392 C

a score=239135.000000
s hg38.chr5_KI270793v1_alt      7395 31 +    126136 CGCATCCCACGGTTCTGTCAGGGCCAATCAG------
s panTro5.chr5             181273205 31 - 181907262 CGCATCCCACGGTTCTGTCAGGGCCAATCAG------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994640 31 - 183735486 CGCATCCCACGGTTCTGTCAGGGCCAATCAG------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85194 31 +    698298 TGCATCCCACGGTTCTGTCAGGGCCAATCAG------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509432 31 - 121039945 CGTATCCCACGGTTCTATCTGCGCCAATCAG------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462640 21 - 180051392 ----------GGTTCTGTCAGGGCCAATCAG------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181193749 31 - 181584905 CGCATCCCACGGTTCTGTCAGGGCCAATCAG------
i macFas5.chr6             T 42 C 0
s macNem1.NW_012012389v1      188613 21 -   1764207 ----------GGTTCTGTCAGGGCCAATCAG------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      203394 31 -  16742782 TGCATCCCACGGTTCTGTCAGGGCCACTCAG------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512594 31 -  91010382 TGCATCCCACGGTTCTGTCAGGGCCACTCAG------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93440 31 -    438239 TGCACCCCACGGTTCTGTCAGGGCCACTCAG------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135339 31 -    514179 TGCATCCCATGGTTCTGTCAGGGCCAATCAG------
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15947283 31 +  16417988 CACATCCCACAGTCCTGTCAAGGCCAATCAG------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       24756 31 +    298490 CACATCCCACAGTCCTGTCAAGGCCAATCAG------
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25343750 31 -  25620257 CACCTCCCACAGTCCTGTCAAGGCCAATCAG------
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1837046 31 -   2165740 CGTTTTCTGCACTGCTGTCCGAGGCAGTCTG------
i otoGar3.GL873745         C 0 I 95
s canFam3.chr34             11678993 34 +  42124431 CGCCACACAAGGGTCTG---AGGCCACCAAGAGTCAG
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203784877  0 + 204313951 C

a score=42990.000000
s hg38.chr5_KI270793v1_alt      7426 4 +    126136 GCCA
s panTro5.chr5             181273236 4 - 181907262 GCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994671 4 - 183735486 GCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85225 4 +    698298 GCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509463 4 - 121039945 GCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462661 4 - 180051392 GCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181193780 4 - 181584905 GCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      188634 4 -   1764207 GCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      203425 4 -  16742782 GCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512625 4 -  91010382 GCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93471 4 -    438239 GCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135370 4 -    514179 GCCA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15947314 4 +  16417988 GCCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       24787 4 +    298490 GCCA
i cebCap1.NW_016108158v1   C 0 I 26
s aotNan1.NW_018503740v1    25343781 4 -  25620257 GCCA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11679027 4 +  42124431 ACTA
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1837077 95 -   2165740 I
e calJac3.chr2             203784877 0 + 204313951 C

a score=16892.000000
s hg38.chr5_KI270793v1_alt      7430 2 +    126136 TG
s panTro5.chr5             181273240 2 - 181907262 TG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994675 2 - 183735486 TG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85229 2 +    698298 TG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509467 2 - 121039945 TG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462665 2 - 180051392 TG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181193784 2 - 181584905 TG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      188638 2 -   1764207 TG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      203429 2 -  16742782 TG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512629 2 -  91010382 TG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93475 2 -    438239 TG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135374 2 -    514179 TG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15947318 2 +  16417988 CG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25343785 2 -  25620257 CG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11679031 2 +  42124431 TG
i canFam3.chr34            C 0 I 76
e otoGar3.GL873745           1837077 95 -   2165740 I
e cebCap1.NW_016108158v1       24791 26 +    298490 I
e calJac3.chr2             203784877 0 + 204313951 C

a score=9100.000000
s hg38.chr5_KI270793v1_alt      7432 1 +    126136 G
s panTro5.chr5             181273242 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994677 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85231 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509469 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462667 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181193786 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      188640 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      203431 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512631 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93477 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135376 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15947320 1 +  16417988 G
i saiBol1.JH378155         C 0 I 6
s aotNan1.NW_018503740v1    25343787 1 -  25620257 G
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1837077 95 -   2165740 I
e cebCap1.NW_016108158v1       24791 26 +    298490 I
e calJac3.chr2             203784877 0 + 204313951 C
e canFam3.chr34             11679033 76 +  42124431 I

a score=15606.000000
s hg38.chr5_KI270793v1_alt      7433 3 +    126136 -TAG-
s panTro5.chr5             181273243 3 - 181907262 -CAG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994678 3 - 183735486 -CAG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85232 3 +    698298 -CAG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509470 3 - 121039945 -CAG-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462668 3 - 180051392 -CAG-
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181193787 3 - 181584905 -CAG-
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      188641 3 -   1764207 -CAG-
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      203432 3 -  16742782 -CAG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512632 3 -  91010382 -CAG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93478 3 -    438239 -CAG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135377 3 -    514179 -CAG-
i colAng1.NW_012118799v1   C 0 C 0
s aotNan1.NW_018503740v1    25343788 5 -  25620257 GCAGG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1837077 95 -   2165740 I
e cebCap1.NW_016108158v1       24791 26 +    298490 I
e saiBol1.JH378155          15947321 6 +  16417988 I
e calJac3.chr2             203784877 0 + 204313951 C
e canFam3.chr34             11679033 76 +  42124431 I

a score=-771.000000
s hg38.chr5_KI270793v1_alt      7436 1 +    126136 T
s panTro5.chr5             181273246 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994681 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85235 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509473 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      203435 1 -  16742782 T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512635 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93481 1 -    438239 T
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135380 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s aotNan1.NW_018503740v1    25343793 1 -  25620257 G
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1837077 95 -   2165740 I
e cebCap1.NW_016108158v1       24791 26 +    298490 I
e saiBol1.JH378155          15947321 6 +  16417988 I
e calJac3.chr2             203784877 0 + 204313951 C
e canFam3.chr34             11679033 76 +  42124431 I
e macNem1.NW_012012389v1      188644 1 -   1764207 I
e macFas5.chr6             181193790 1 - 181584905 I
e rheMac8.chr6             179462671 1 - 180051392 I

a score=798049.000000
s hg38.chr5_KI270793v1_alt      7437 97 +    126136 TGTGCACAGCTC-CCCTCACCACCACCTAGGCATCTCTCTCCAGGGTGACCCTGCCAGGAGCCCAGGAGGCAGCCCCAGGCCCACTGCACTGCCACTC
s panTro5.chr5             181273247 97 - 181907262 TGTGCACAGCTC-CTCTCACCACCACCTAGGCACCTCTCTCCAGGGTGACCCCGCCAGGAGCCCAGGAGGCAGCCCCAGGCCCACTGCGCTGCCACTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994682 97 - 183735486 TGTGCACAGCTC-CTCTCACCACCACCTAGGCACCTCTCTCCAGGGTGACCCCGCCAGGAGCCCAGGAGGCAGCCCCAGGCCCACTGCGCTGCCACTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85236 97 +    698298 TGTGCACAGCTC-CCCTCACCACCACCTAGGCATCTCTCTCCAGGGTGACCCCGCCAGGAGCCCAGGGGGCAGCCCCAGGCCCACTGCGCTGCCACTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509474 97 - 121039945 TGTGCACAGCTC-CCCTCACCACCACCTAGGCATCTCCCTCCAGGGTGACCCCGCCAGGGGCCCAGGAGGCAGCCCCAGGCCCACTGCACTGCCACTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462672 96 - 180051392 TGTGCACAGCTC-CCCTCACCACCACCTAGGCGTCTCCCTCCGGGGTGACCCTGCCAGGGGCCCA-GAGGCAGCCCCAGGCCCACTGTGCTGCCACTC
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181193791 96 - 181584905 TGTGCACAGCTC-CCCTCACCATCACCTAGGCGTCTCCCTCCGGGGTGACCCTGCCAGGGGCCCA-GAAGCAGCCCCAGGCCCACTGTGCTGCCACTC
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      188645 96 -   1764207 TGTGCACAGCTC-CCCTCACCACCACCTAGGCGTCTCCCTCCAGGGTGACCCTGCCAGGGGCCCA-GAGGCAGCCCCAGGCCCACTGTGCTGCCACTC
i macNem1.NW_012012389v1   I 1 C 0
s cerAty1.NW_012009470v1      203436 96 -  16742782 TGTGCACAGCTC-CCCTCACCACCACCTAGGCGTCTCCCTCCGGTGTGACCCTGCCAGGGGCCCA-GAGGCAGCTCCAGGCCCACTGTGCTACCACTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512636 96 -  91010382 TGTGCACAACTC-CCCTCACCACCATCTAGGCGTCTCCCTCCAGGGTGACCCTGCCAGGGGCCCA-GAGGCAGCCCCAGGCCCACTGTGCTGCCACTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93482 96 -    438239 TGTGCACAGCTC-CCCTCACCACCACCTAGGCGTCTCCCCGCAGGGTGACCCTGCCAGGGGCCCA-GAGGCAGCTCCAGGCCCACAGTGCTACCACTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135381 96 -    514179 TGTGCACAGCTC-CCCTCACCACCACCTAGGTGTCTCCCTCCAGGGTGACCCTGCCAGGGGCCCA-GAGGCAGCCCCAGGCCCACTGTGCTGCCACTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203784877 97 + 204313951 TGTGCACAGCTCTCCCTCTCTATCACCTAGGCATCTCCCACTACGGCGACCCCGCCAGGGGCCCA-GCAGCAGCCCCAGACCCACTGTGTTGCCACTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15947327 86 +  16417988 TGTGCACAGCTCCCCCGCACCATCACCTCGGCGTCTCCCACCAGGGCGACCCCGCCAGGGGCCCA-GCAACAGCCCCAGAC-----------CCACTC
i saiBol1.JH378155         I 6 C 0
s aotNan1.NW_018503740v1    25343794 96 -  25620257 TGTGCACAGCTC-CCCTCACCATCACCTAGGCGTCTCCCACCAGGGCGACCCCGCCAGGGGCCCA-GCAGCAGCCCCAGACCCACTGCGCTGCCACTT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1837077 95 -   2165740 I
e cebCap1.NW_016108158v1       24791 26 +    298490 I
e canFam3.chr34             11679033 76 +  42124431 I

a score=19545.000000
s hg38.chr5_KI270793v1_alt      7534 2 +    126136 AG
s panTro5.chr5             181273344 2 - 181907262 AG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994779 2 - 183735486 AG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85333 2 +    698298 AG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509571 2 - 121039945 AC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462768 2 - 180051392 AG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181193887 2 - 181584905 AG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      188741 2 -   1764207 AG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      203532 2 -  16742782 AG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512732 2 -  91010382 AG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93578 2 -    438239 AG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135477 2 -    514179 AG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203784974 2 + 204313951 AG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15947413 2 +  16417988 AG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       24817 2 +    298490 AG
i cebCap1.NW_016108158v1   I 26 C 0
s aotNan1.NW_018503740v1    25343890 2 -  25620257 AG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1837077 95 -   2165740 I
e canFam3.chr34             11679033 76 +  42124431 I

a score=21328.000000
s hg38.chr5_KI270793v1_alt      7536 2 +    126136 TA
s panTro5.chr5             181273346 2 - 181907262 TA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994781 2 - 183735486 TA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85335 2 +    698298 TA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509573 2 - 121039945 TA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462770 2 - 180051392 TA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181193889 2 - 181584905 TA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      188743 2 -   1764207 TA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      203534 2 -  16742782 TA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512734 2 -  91010382 TA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93580 2 -    438239 TA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135479 2 -    514179 TA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203784976 2 + 204313951 TA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15947415 2 +  16417988 TA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       24819 2 +    298490 TA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25343892 2 -  25620257 TA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1837172 2 -   2165740 TT
i otoGar3.GL873745         I 95 C 0
e canFam3.chr34             11679033 76 +  42124431 I

a score=2076555.000000
s hg38.chr5_KI270793v1_alt      7538 215 +    126136 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAAGATATAATCATCGTCATCAGAG--------------------GGCGACAACACAACGTAACGTGATGTGTATGAAATGTAGCCCACGGTAAACACAAAAA----TACGCAACAC------------AAAGTGTACCGTATACAGATG---TAAGCAGAGGGTTACAAAACAGACTCCGT-----------TTCTGCT---------GTGAATGGACTTTCCACTGATGTTGATAGCAATAAA
s panTro5.chr5             181273348 213 - 181907262 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAAGATATAACCATCGTCATCAGAG--------------------GGCGACAACACAACGTAACGTGATGTGTATGAAATGTAGCCCACGGTAAACACAAAAA----TACACAACAC------------AAAGT--ACCGTATACAGGTG---TAAGCAGAGGGTTACAAAACAGACTCCGT-----------TTCTGCT---------GTGAATGGACTTTCCACTGATGTTGGTAGCAATAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994783 213 - 183735486 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAAGATATAACCATCGTCATCAGAG--------------------GGCGACAACACAACGTAACGTGATGTGTATGAAATGTAGCCCACGGTAAACACAAAAA----TACACAACAC------------AAAGT--ACCGTATACAGGTG---TAAGCAGAGGGTTACAAAACAGACTCCGT-----------TTCTGCT---------GTGAATGGACTTTCCACTGATGTTGGTAGCAATAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85337 215 +    698298 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAAGATATAACCATCGTCATCAGAG--------------------AGCGACAACATAACGTAACGTGATGTGTATGAAATGTAGCCCACGGTAAACACAAAAA----TACACAACAC------------AAAGTGTACCGTATACAGGTG---TAAGCAGAGGGTTACAAAACAGACTCCAT-----------TTCTGCT---------GTGAATGGACTTTCCACTGATGTTGATAGCAATAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509575 214 - 121039945 AGTCTCAGGGGTCTCATTTCATTTCCTTTAAAGATATAACCATCGTCATCAGAG--------------------GGCTACAACACAACGTAACGTGATGTGTATGAAATGTAGCCCACGGTAAACACAAAAA-----ACACAACAC------------AAAGTGTACCGTTTACAGGTG---TAAGCAGAGGGTTACAAAACAGACTCCGT-----------TTCTGCT---------GTGAATGGACTTTCCACTGATGTTGATAGCAATAAA
i nomLeu3.chr6             C 0 I 5
s rheMac8.chr6             179462772 215 - 180051392 AGTCTCTGGGGTCTCACTGCATTTCCTTTAAAGATATAACCATCATCATCAGAG--------------------GGCTACAACACAACGTAACGCGATGTGTATGAAATGTAGCCCACGGTAAACACAAAAA----AACACAACCC------------CAAGTGTACGGTTTACAGGTG---TAAACAGAGGGTTACAAAACACACACCGT-----------TTCTGCT---------GCAAATGGACTTTCCACTGAGGTTGATAGCAGTAAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181193891 215 - 181584905 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAAGACATAACCATCATCATCAGAG--------------------GGCTACAACACAACGTAATGCGATGTGTATGAAATGTAGCCCACGGTAAACACAAAAA----AACACAACCC------------CAAGTGTACAGTTTACAGGTG---TAAACAGAGGGTTACAAAACACACACCGT-----------TTCTGCT---------GCAAATGGACTTTCCACTGAGGTTGATAGCAATAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      188745 215 -   1764207 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAAGATATAACCATCATCATCAGAG--------------------GGCTACAACACAACGTAACGCGATGTGTATGAAATGTAGCCCATGGTAAACACAAAAA----AACACAACCC------------CAAATGTACGGTTTACAGGTG---TAAACAGAGGGTTACAAAACACACACCGT-----------TTCTGCT---------GCAAATGGACTTTCCACTGAGGTTGATAGCAATAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      203536 224 -  16742782 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAAGATTTAACCATCACCATCAGAG--------------------AGCTACAACACAACGTAACGTGATGTGTATGAAATGTAGCCCATGGTAAACACAAAAA----AACACAACCC------------AAAGTGTACGGTTTACAGGTG---TAAACAGAGGGTTACAAAACACACGCCGT--TTCTGCCGCTTCTGCT---------GCGAATGGGCTTTCCACCGATGTTGATAGTAATAAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512736 215 -  91010382 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAAGATATAACCACCATCATCAGAG--------------------GGCTACAACACAACGTAACGTGATGTGTATGAAATGTAGCCCACGGTAAACACAAAAA----ACCACAACCC------------CAAGTGTACGGTTCACAGGTG---TAAGCAGAGGGTTACAAAACACACGCCGT-----------TTCTGCC---------GCAAATGGACTTTCCGCTGATGTTGATAGCAATCAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       93582 224 -    438239 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAAGATCTAACCATCACCATCAGAG--------------------AGCTACAACACAACGTAACGTGATGTGTATGAAATGTAGCCCAAGGTAAACACAAAAA----AACACAACCC------------AAAGTGTACGGTTTACAGGTG---TAAGCAGAGGGTTATAAAACACACGCCGT-----------TTCTGCCGCTTCTGCTGCGAATGGGCTTTCCACCGATGTTGATAGTAATAAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135481 215 -    514179 AGTCTCTGGAGTCTCATGTCATTTCCTTTAAAGATATAACCATCATCATCAGAG--------------------GGCTACAACACAACGTAACGTGATGTGTATGAAATGTAGCCCACGGTAAACACAAAAA----GACACTACCC------------AAAGTGTACAGTTTACAGGTG---TAAGCAGAGGGTTACAAAACACATGCCGT-----------TTCTGCT---------GCGAATGGACTTTCCACTGATGTTGATAGCAATCAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203784978 213 + 204313951 AGTCTGTGGGGTCTCATTTCATTTCCTTTAAAGATATAACCATCGTCAGCAGAG--------------------GGCTACAACACAATGTAACGTGATGTGTATGAAATCTAGCCCACAGCAAACACAATAA----AACACAACAC--------------AGAGTCCAGTTTACAGGTT---TAAGTACACAGTTACAAGACAGACCCCGT-----------TTCCACT---------ATAAATGTACTTTCCACTGATTTAGATAGCATTTAA
i calJac3.chr2             C 0 I 386
s saiBol1.JH378155          15947417 215 +  16417988 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAATATGTAACTATCATCAGCAGAG--------------------GGCTACAACACAATGTAATGTGATGTGTATGAAATCTAGCCCACAGCAAACACAATAA----AACACAACAC------------CAAGAGTCCAGTTCACAGGTG---TAAGCACACAGTTGCAAAACAGACTCCGT-----------TTCCACT---------GTAAATGTACTTTCCACTGATGTTGATAGCAACGAA
i saiBol1.JH378155         C 0 I 5
s cebCap1.NW_016108158v1       24821 213 +    298490 AGTCTCTGTGGTCTCATTTCATTTCCTTTAAAGATATAACCATCGTCAGCAGAG--------------------GGCTACAACACAATGTAACGTGATGTGTATGAAATCCAGCCCACGGCAAACACAATAA----AACACAACAC--------------AGAGTCCAGTTTACAGGTA---TAAGCACACAGTTACAAAACAGACTCCGT-----------TTCCACT---------GTAAATGTACTTTCCACTGATGTTGATAGCAATGAA
i cebCap1.NW_016108158v1   C 0 I 5
s aotNan1.NW_018503740v1    25343894 213 -  25620257 AGTCTCTGGGGTCTCATTTCATTTCCTTTAAATACACAACCTTCGTCAGTAGAG--------------------GGCTACAACACAATGTAACGTGCTGTGTATGAAATCCAGCCCACGGCAAACACAACCA----AACACCACAC------------AGAGAGTCCACTTCACAGGTA---TAAG--CACAGTCACAAAACAGACTCCGT-----------GTCCACT---------GTAAATGTGCTTTCCACTGATGTTGACGGTTACGAA
i aotNan1.NW_018503740v1   C 0 I 5
s otoGar3.GL873745           1837174 221 -   2165740 AGTCTTTGGGGTCTTATCTTTCATCCTTTAAGGAGACAACTATCTTCATCAGAT--------------------AGCTAGCGAA-----------GATGTATAAGAAATCCAGCTCA-AGCAAACATAAGAAAAATAACACAATACTTCGAATCATTCTAAGTCCAGAGTTCACAAGTATGCTAAGCATACAATTACAAAAGAT-TGTATT-----------TTTTACC---------CTAAATGTACCTTTCACTGATATTGATAGCAATACA
i otoGar3.GL873745         C 0 I 5
s canFam3.chr34             11679109 228 +  42124431 AGTCCTTCAGGCCTTATTTCAGTTCCTTTAAAGATACAACTATTTTCATCAGAGATAGGACTTCTGGTTGTTAAAGTCATTTAAAGACGTAATGAGATGCATGAGAAA---AACCCA------ACGCCTATA----ACTGTGGT--------------TAACCATACGGCCTACA--CG---TAAGCACAGG--TATAAAACAGACTGCATTTTTTTTTTTTTTTTACC---------ATAAATGTACTTTCCACTG---CTGATAGCAATTAA
i canFam3.chr34            I 76 I 5

a score=46840.000000
s hg38.chr5_KI270793v1_alt      7753 4 +    126136 TTTT
s panTro5.chr5             181273561 4 - 181907262 TTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182994996 4 - 183735486 TTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85552 4 +    698298 TTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509794 4 - 121039945 TTTT
i nomLeu3.chr6             I 5 C 0
s rheMac8.chr6             179462987 4 - 180051392 TCTT
i rheMac8.chr6             C 0 I 5
s macFas5.chr6             181194106 4 - 181584905 TCTT
i macFas5.chr6             C 0 I 5
s macNem1.NW_012012389v1      188960 4 -   1764207 TCTT
i macNem1.NW_012012389v1   C 0 I 5
s cerAty1.NW_012009470v1      203760 4 -  16742782 TTTT
i cerAty1.NW_012009470v1   C 0 I 331
s chlSab2.chr4              90512951 4 -  91010382 TCTT
i chlSab2.chr4             C 0 I 5
s manLeu1.NW_012110441v1       93806 4 -    438239 TTTT
i manLeu1.NW_012110441v1   C 0 I 4152
s colAng1.NW_012118799v1      135696 4 -    514179 TTTT
i colAng1.NW_012118799v1   C 0 I 5
s calJac3.chr2             203785577 4 + 204313951 CTTT
i calJac3.chr2             I 386 C 0
s saiBol1.JH378155          15947637 4 +  16417988 TTTT
i saiBol1.JH378155         I 5 C 0
s cebCap1.NW_016108158v1       25039 4 +    298490 TTTT
i cebCap1.NW_016108158v1   I 5 C 0
s aotNan1.NW_018503740v1    25344112 4 -  25620257 TTTT
i aotNan1.NW_018503740v1   I 5 C 0
s otoGar3.GL873745           1837400 4 -   2165740 TTTT
i otoGar3.GL873745         I 5 C 0
s canFam3.chr34             11679342 4 +  42124431 TTTT
i canFam3.chr34            I 5 C 0

a score=17312.000000
s hg38.chr5_KI270793v1_alt      7757 3 +    126136 AAG-
s panTro5.chr5             181273565 3 - 181907262 AAG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182995000 3 - 183735486 AAG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85556 3 +    698298 AAG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509798 3 - 121039945 AAG-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462996 3 - 180051392 AAG-
i rheMac8.chr6             I 5 C 0
s macFas5.chr6             181194115 3 - 181584905 AAG-
i macFas5.chr6             I 5 C 0
s macNem1.NW_012012389v1      188969 3 -   1764207 AAG-
i macNem1.NW_012012389v1   I 5 C 0
s cerAty1.NW_012009470v1      204095 3 -  16742782 aag-
i cerAty1.NW_012009470v1   I 331 C 0
s chlSab2.chr4              90512960 3 -  91010382 AAG-
i chlSab2.chr4             I 5 C 0
s colAng1.NW_012118799v1      135705 3 -    514179 AAG-
i colAng1.NW_012118799v1   I 5 C 0
s calJac3.chr2             203785581 3 + 204313951 TGG-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15947641 3 +  16417988 TAG-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       25043 3 +    298490 TAG-
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25344116 3 -  25620257 TAG-
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1837404 3 -   2165740 AAG-
i otoGar3.GL873745         C 0 I 420
s canFam3.chr34             11679346 3 +  42124431 -AGG
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1       93810 4152 -    438239 I

a score=609322.000000
s hg38.chr5_KI270793v1_alt      7760 54 +    126136 AAAGAGACCTAAAACTTACCTCCAGACTAACCAAGGAGTTGCGCGAGAGATCCA
s panTro5.chr5             181273568 54 - 181907262 AAAGAGACCTAAAACTTACCTCCAGACTAACCAAGGAGTTGCGCGAGAGATCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182995003 54 - 183735486 AAAGAGACCTAAAACTTACCTCCAGACTAACCAAGGAGTTGCGCGAGAGATCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85559 54 +    698298 AAAGAGACCTAAAACTTACCTCCAGACTAACCAAGGAGTTGCGCGAGAGATCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509801 54 - 121039945 AAAGAGACCTAAAACTTACCTCCAGACTAACCAAGGAGTTGCGCGAGAGATCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179462999 54 - 180051392 AAAGAGACCTAAAACTTACCTCCAGACTAACCAAGGAGTTGCGTGAGAGATCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181194118 54 - 181584905 AAAGAGACCTAAAACTTACCTCCAGACTAACCAAGGAGTTGCGTGAGAGATCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      188972 54 -   1764207 AAAGAGACCTAAAACTTACCTCCAGACTAACCAAGGAGTTGCGTGAGAGATCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      204098 53 -  16742782 aaagagacc-aaaaCTTACCTCCAGACTAACCAAGGAGTTGCGTGAGAGATCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90512963 53 -  91010382 AAAGAGACC-TAAACTTACCTCCAGACTAACCAAGGAGTTGCGTGAGAGATCCA
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      135708 54 -    514179 AAAGAGACCTAAAACTTACCTCCAGACTAACCAAGGAGTTGCGTGAGAGATCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203785584 54 + 204313951 AAAGAGGCGTGAAACTCACCTCCAGACTAACCAAGGAGTTGCGTGAGAGATCGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15947644 54 +  16417988 AAAGAGACCTAAAACTCACCTCCAGACTAACCAAGGAGTTGCGTGAGAGATCGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       25046 54 +    298490 AAAGAGACCTAAAACTCACCTCCAGACTAACCAAGCAGTTGCGTGACAGATCGA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25344119 54 -  25620257 AAAGAGACCTGAAACTCACCTCCAGGCTAACCAAGGAGTTGCGTGAGAGATCGA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1837827 54 -   2165740 aaaGAAACCTTAAACTTACCTCTAGACTAACCAAGGAGTTGCGTGAAAGATCTA
i otoGar3.GL873745         I 420 C 0
s canFam3.chr34             11679349 54 +  42124431 AAACAAACCTAAAACTTACCTCTAGGCTCACCAAGGAGTTGCGTGAGAGGTCTA
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1       93810 4152 -    438239 I

a score=1328809.000000
s hg38.chr5_KI270793v1_alt      7814 101 +    126136 AAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTGATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACTGAAGCTCAGCTAAGAAT
s panTro5.chr5             181273622 101 - 181907262 AAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTGATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACCGAAGCTCAGCTAAGAAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182995057 101 - 183735486 AAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTGATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACCGAAGCTCAGCTAAGAAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85613 101 +    698298 AAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTAATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACCGAAGCTCAGCTAAGAAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509855 101 - 121039945 AAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTAATCTTCCCTTGGTAAGTTCCAGGAATAGACAATGACCGAAGCTCAGCTAAGAAT
i nomLeu3.chr6             C 0 I 1
s rheMac8.chr6             179463053 101 - 180051392 AAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTAATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACTGAAGCTCAGCTGAGAAT
i rheMac8.chr6             C 0 I 3
s macFas5.chr6             181194172 101 - 181584905 AAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTAATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACTGAAGCTCAGCTGAGAAT
i macFas5.chr6             C 0 I 3
s macNem1.NW_012012389v1      189026 101 -   1764207 AAGATTTCAGACCTGTTAAGCTCATCAGAGAATGTCCCAGGTGGGTAATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACTGAAGCTCAGCTGAGAAT
i macNem1.NW_012012389v1   C 0 I 3
s cerAty1.NW_012009470v1      204151 101 -  16742782 AAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTAATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACTGAAGCTCAGCTGAGAAT
i cerAty1.NW_012009470v1   C 0 I 3
s chlSab2.chr4              90513016 101 -  91010382 AAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTAATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACTGAAGCTCAGCTGAGAAT
i chlSab2.chr4             C 0 I 4
s manLeu1.NW_012110441v1       97962 101 -    438239 AAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTAATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACTGAAGCTCAGCTAAGAAT
i manLeu1.NW_012110441v1   I 4152 I 5773
s colAng1.NW_012118799v1      135762 101 -    514179 AAGATTTCAGACGTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTAATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACTGAAGCTCAGCTAAGAAT
i colAng1.NW_012118799v1   C 0 I 4
s calJac3.chr2             203785638 101 + 204313951 GAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTGATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACCGAAGCTCGGCTAAGAAT
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          15947698 101 +  16417988 GAGATTTCAGACCTGTTAAACTCATCAGAGAACGTCCCAGGTGGGTGATCTTCTCTTGGTAAGTTCCAGGAATAGACAATGACCGAAGCTCGGCTGAGAAT
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       25100 101 +    298490 GAGATTTCAGACCTGTTAAACTCATCAGAGAATGTCCCAGGTGGGTGATCTTCTCCTGGTAGGTTCCAGGAATAGACAATGACCGAAGCTCAGCTAAGAAT
i cebCap1.NW_016108158v1   C 0 I 1
s aotNan1.NW_018503740v1    25344173  98 -  25620257 GAGATTTCAGACCCGTTAAACGCATCAGAGAATGTCCCAGGTGGGTGA---TCTCTTGGTAAGTTCCAGGGATAGACAATGACGGAAGCTCGGCTAAGAAT
i aotNan1.NW_018503740v1   C 0 I 1
s otoGar3.GL873745           1837881 101 -   2165740 AAGATTTCAGACCTGATAAATTCATCAAAGAATTTCCTAGGTGAGTAATCTTCTCTTGGTAAGTTCCAGGAATAGATAAAGATTGAAGCTCAGCTAAGAAT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11679403 101 +  42124431 ATGATTTTAGACCCGTTAAATGCATCAAGGAATTTCCTAGGTGAGTAATCTTTTCTTGGTAAGTTCCAGGAATAGATAATGACCGAAGTTCAGCTAAGAAC
i canFam3.chr34            C 0 C 0

a score=313756.000000
s hg38.chr5_KI270793v1_alt      7915 32 +    126136 A-GAAAAATTGTAAGATTTTAATCTTTTATTTT-----
s panTro5.chr5             181273723 32 - 181907262 A-GAAAAATTGTGAGATTTTAATCTTTTATTTT-----
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182995158 32 - 183735486 A-GAAAAATTGTGAGATTTTAATCTTTTATTTT-----
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85714 32 +    698298 A-AAAAAACTATGAGATTTTAATCTTTTATTTT-----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509957 32 - 121039945 A-AAAAAATTATGAGATTTTAATCTTTTATTTT-----
i nomLeu3.chr6             I 1 C 0
s rheMac8.chr6             179463157 32 - 180051392 A-AAAAAATTATGAGATTTTAATCTTTTCTTTT-----
i rheMac8.chr6             I 3 C 0
s macFas5.chr6             181194276 32 - 181584905 A-AAAAAATTATGAGATTTTAATCTTTTCTTTT-----
i macFas5.chr6             I 3 C 0
s macNem1.NW_012012389v1      189130 32 -   1764207 A-AAAAAATTATGAGATTTTAATCTTTTCTTTT-----
i macNem1.NW_012012389v1   I 3 C 0
s cerAty1.NW_012009470v1      204255 32 -  16742782 A-AAAAAATTATGAGATTTTAATCTTTTCTTTT-----
i cerAty1.NW_012009470v1   I 3 C 0
s chlSab2.chr4              90513121 32 -  91010382 A-AAAAAATGATGAGATTTTAATCTTTTCTTTT-----
i chlSab2.chr4             I 4 C 0
s manLeu1.NW_012110441v1      103836 32 -    438239 A-AAAAAATTATGAGATTTTAATCTTTTCTTTT-----
i manLeu1.NW_012110441v1   I 5773 C 0
s colAng1.NW_012118799v1      135867 25 -    514179 A-AAAAAATTATGAGAT-------TTTTCTTTT-----
i colAng1.NW_012118799v1   I 4 C 0
s calJac3.chr2             203785740 32 + 204313951 C-AAAAAATTATGAGACTTTAATCTTTTCTTTT-----
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          15947800 32 +  16417988 C-AAAAAATTATGAGACTTTAATCTTTTCTTTT-----
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1       25202 32 +    298490 C-AAAAAATTATGAGACTTTAATCTTTTCTTTT-----
i cebCap1.NW_016108158v1   I 1 C 0
s aotNan1.NW_018503740v1    25344272 33 -  25620257 CAAAAAAATTATGAGACTTTAATCTTTTCTTTT-----
i aotNan1.NW_018503740v1   I 1 C 0
s otoGar3.GL873745           1837982 21 -   2165740 --AAAAAATTATAACATTTTA----------TT-----
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11679504 36 +  42124431 --AGAAAATGATGAGACTTTAACCTTACtttttatttt
i canFam3.chr34            C 0 I 50

a score=1810428.000000
s hg38.chr5_KI270793v1_alt      7947 192 +    126136 GAAAACA---ATTATAATAACGGT-CAAGTTCTTGGTG-TTGGATATGGAG--TAGAAACtgacacagattcttggtttaattcaactttactcaggctcctgaatcttctcctcggccatctgtgcccttccttgtaaagtccagtttagtgcggccaaaacccccaccctcagtatctgctcaggttcctcatcccc
s panTro5.chr5             181273755 192 - 181907262 GAAAACA---ATTATAATAACGGT-CAAGTTCTTGGTG-TTGGATATGGAG--TAGAAACtgacacagattcttggtttaattcaactttactcaggctcctgaatcttctccttggccatctgtgcccttccttgtaaagtccagtttagtgtggccaaaacccccaccctcaatatctgctcaggttcctcatgccc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182995190 192 - 183735486 GAAAACA---ATTATAATAACGGT-CAAGTTCTTGGTG-TTGGATATGGAG--TAGAAACtgacacagattcttggtttaattcaactttactcaggctcctgaatcttctccttggccatctgtgcccttccttgtaaagtccagtttagtgcggccaaaacccccaccctcaatatctgctcaggttcctcatcccc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85746 193 +    698298 GAAAACA---ATTATAATAACGGT-CAAGTTCTCGGTGTTTGGATATAGAG--TAGAAACtgacacagattcttggtttaattcaactttactcaggctcctgaatcttctcctcggccatctgtgcccttccttgtaaagtccagtttagtgcggccaaaacccccaccctcattatctgctcaggttcctcatcccc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120509989 196 - 121039945 GCAAACAATTATTATAATAACAGT-CAAGTTCTTGGTGTTTGGATATAGAG--TAGAAACtgacacagattcttggtttaattcaactttactcaggctcctgaatcttctcctcggccatctgtgcccttccttgtaaagtccagtttagtgcagccaaaacccccaccctcagtatctgctcaggttcctcatcccc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179463189 196 - 180051392 GAAAACAATTATTATAATAAAGGT-CAAGTTCTTGGTGTTTGGATATAGAG--TAGACACtgacacagattcctggtttaattcaacttcactcaggctcccgaatcttctcctcggccatctgtgcccttccttgtaaagtccagtttagtgcggccagaacccccaccctcagtatctgctcaggttccctatcccc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181194308 196 - 181584905 GAAAACAATTATTATAATAAAGGT-CAAGTTCTTGGTGTTTGGATATAGAG--TAGACACtgacacagattcctggtttaattcaacttcactcaggctcccgaatcttctcctcggccatctgtgcccttccttgtaaagtccagtttagtgcggccagaacccccaccctcagtatctgctcaggttccctatcccc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      189162 196 -   1764207 GAAAACAATTATTATAATAAAGGT-CAAGTTCTTGGTGTTTGGATATAGAG--TAGACACtgacacagattcctgatttaattcaacttcactcaggctcccgaatcttctcctcggccatctgtgcccttccttgtaaagtccagtttagtgcggccagaacccccaccctcagtatctgctcaggttccctatcccc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      204287 196 -  16742782 GAAAACAATTATTATAATAAAGGT-CAAGTTCTTGGTGTTTGGATATAGAG--GAGACACtgacacagattcttggtttaattcaactttactcaggctcctgaatcttctcctcggccatctgcgcccttccttgtaaagtccagtttagtgtggccagaacccccagcctcagtatctgctcaggttccctatcccc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90513153 194 -  91010382 GAAAACAATTATTATAATAAAGGT-CAAGTTCTTGGTGTTTGGATATAGAG--TAGACACtgacacagattcttggtttaattcaactttactcaggctcctgaatcttctccttggccatctgcg-ccttccttgtaaagtccagtttagtgcggcca-aactgcccccctcagtatctgctcaggttccctatcccc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      103868 196 -    438239 GAAAACAATTATAATAATAAAGGT-CAAGTTCTTGGTGTTTGGATATAGAG--TAGACACtgacacagattcttggtttaattcaactttactcaggctcctgaatcttctcctcggccatctgcgcccttccttgtaaagtccagtttagtgtggccacaacccccaccctcagtatctgctcaggttccctatcccc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      135892 196 -    514179 GAAAACAATTATTATAATAAAGGT-CAAGTTCTTGGTGTTTGGATATGGAG--TAGGCACCgacacagattcttggtttaattcaactttactcaggctcctgaatcttctcctcggccatctgcgcccttccttgtaaagtccagttcagtgcggccaaaacccccaccctcaatatctgctcaggttccctatcccc
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203785772 192 + 204313951 GAAAACAATGATTACAATAAAAGT-GAGGTTCTTGGTGTTTGGA-AAACAG--TAGATACtgacacag--tcctggtttgtctaaaccctactccagctcctgaatcttctcctaggccgtctgt-cccttccttgtaaagtccagtccagcacagccagaacccccaccctcaatatctgatcaggtttctcatcccc
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          15947832 194 +  16417988 GAAAACAATGATTACAATAAAGAT-GAGGTTCTTGGTGTTTGGA-ATACAGTATAGATACtgacacag--tcctggtttgactaaaccttactccagctcctgaatcttctcctaggccatccgt-cccttccttgtaaagtcccgtctagcgcagccagaacccccaccctcaatatctgatcaggttccttatcccc
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       25234 192 +    298490 GAAAACAATGATTACAACAAAAGT-GAGGTTCTTGGTGTTTGGA-AGACAG--TAGATACtgacacag--tcctggtctgactaaacctgactccagctcctgaaccttcccctaggccatctgt-cccttccttgtgaagtcctgtccagcgcagccagaacccccaccctcaatatctgatcggcttcctcatcccc
i cebCap1.NW_016108158v1   C 0 I 95
s aotNan1.NW_018503740v1    25344305 192 -  25620257 GAAAACAATGATTACAATACAAGT-GAGGTCCTTGGTGTTTGGA-ATACAG--TGGATACtgacacag--tcctgctttgactgaaccttactccagctcctgaatctcctcctaggccctctgt-cccttccttgtaaggtccagtccagcgcagccagaacccccaccctcagtatctgatcaggttcctcatcccc
i aotNan1.NW_018503740v1   C 0 I 1
s otoGar3.GL873745           1838003 184 -   2165740 GAATATAGGTATTGTCATAAAAGTCCAAATTCTTAGTTTTTAGAAATACAG--CAGACATGgacaaagaccc----tttgaccaaactttactcaggctcctgaatct--tcctagaccatctgcgtgcttctttataaaattcagctttat----ctaaaac--ccagccaagtcagtttagtaagaatcctaccct-
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11679540  50 +  42124431 I

a score=728321.000000
s hg38.chr5_KI270793v1_alt      8139 96 +    126136 agatcccataggtggtgtctgctcaccctggcctctctttcgcaataatcctgttcagttg---gtttagcccaaatcccctt-actcctcatgtgtcct
s panTro5.chr5             181273947 96 - 181907262 agatcccataggtggtgtctgctcaccctggcctctctttcacaataatcctgttcagttg---gtttagcccaaatcccctt-actcctcatgtgtcct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182995382 96 - 183735486 agatcccataggtggtgtctgctcaccctggcctctctttcacaataatcctgttcagttg---gtttagcccaaatcccctt-actcctcatgtgtcct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       85939 96 +    698298 agatcccataggtggtgtctgctcaccctggcctctctttcgcaataatcctgttcagttg---gtttagcccaaatcccctt-actcctcatgtgtcct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120510185 96 - 121039945 agatcccacaggtggtgtctggtcaccctggcctctcttatgcaataatcctgttcggtcg---gtttagcccaaatcccctt-attcctcacgtgtcct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179463385 96 - 180051392 agatcccacaggtggtgtctggtcaccctggcctctcttttgcaataatcccgttcagtcg---gtttagctcaaatcccctt-actcctcatgtgtcct
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181194504 96 - 181584905 agatcccacaggtggtgtctggtcaccctggcctctcttttgcaataatcctgttcagtcg---gtttagctcaaatcccctt-actcctcatgtgtcct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      189358 96 -   1764207 agatcccacaggtggtgtctggtcaccctggcctctcttttgcaataatcccgttcagtcg---gtttagctcaaatcccctt-actcctcatgtgtcct
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      204483 96 -  16742782 agatcccacaggtggtgtctggtcaccctggcctctctttcgcaataatcccgttcagtcg---gtttagcccaaatcccctt-cctcctcatgtgtcct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90513347 96 -  91010382 agatcccacaggtggtgtctggtcaccctggcctctctttcgcaataatcccgttcagtcg---gtttagcccaaatcccctt-actcctcatgcgtcct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      104064 96 -    438239 agatcccacaggtggtgtctgatcaccctggcctctctttcgcaataatcccgttcagtcg---gtttagcccaaatcccctt-actcctcatgtgtcct
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      136088 96 -    514179 agatcccacaggggctgtctggtcaccctggcctctctttcgcagtaatcctgttcagtag---gtttagcccaaatcccctt-cctcctcatgtgtcct
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203785965 96 + 204313951 aggtcccacaggtgatgctgggtc-ccccagcctgtcttttgcaacagccccgttgggtcg---gtttagctacaatccccctggctcctcatgtttgct
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          15948027 94 +  16417988 acgtcccacaggtgatgctgggtc-ccccagcctgtctttcgcaacagccccattgggtcg---gtttagctaaaatccccctggctcctcacgtctg--
i saiBol1.JH378155         I 1 C 0
s aotNan1.NW_018503740v1    25344498 94 -  25620257 aggtcccacaggtgatgccggct--ccccagcctgtctttcgcaacagcccc-ctgggtcg---gtttagctaaaattcccctggctcctcctgtttgct
i aotNan1.NW_018503740v1   I 1 C 0
s otoGar3.GL873745           1838187 85 -   2165740 tgatgcc-caggcaatatctgctc---ctggcctgccctcagcaa-gatcctctggggtggggagtgcagccagaagccccca-gcttcct---------
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       25426 95 +    298490 I
e canFam3.chr34             11679540 50 +  42124431 I

a score=2034787.000000
s hg38.chr5_KI270793v1_alt      8235 213 +    126136 ctcagtcattttccatccactgcccccaccctgacc---ctaggctataaact-ccccccggcccctgctgtacttggagttgagctccatctctc-tcccccactgcaaaatcccagcgcagtggccccaggcccacctcaatggttctgaataaagccttcctcactgtgcc-tgacaagggtcattcaaaacatttcttcctctaacaGTATATGT
s panTro5.chr5             181274043 213 - 181907262 ctcagtcattttccatccactgcccccaccctgacc---ctcggctataaact-ccccccggcccctgctgtacttggagttgagctccatctctc-tcccccactgcaaaatcccagcgcagtggccccaggcccacctcaatggttctgaataaagccttcctcactgtgcc-tgacaagagtcattcaaaacatttcttcctctaacaGTATATGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182995478 213 - 183735486 ctcagtcattttccatccactgcccccaccctgacc---ctcggctatacact-ccccccggcccctgctgtacttggagttgagctccatctctc-tcccccactgcaaaatcccagcgcagtggccccaggcccacctcaatggttctgaataacgccttcctcactgttcc-tgacaagggtcattcaaaacatttcttcctctaacaGTATATGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86035 213 +    698298 ctcagtcattttccatccactgcccccaccctgacc---ctcggctataaact-ccccccggcccctgctgtacttggagttgagctccatctctc-tctcccactgcaaaatcccagcgcagtggccccaggcccacctcaatggttctgaataaagccttcctcactgtgcc-tgacaagggtcattcaaaacatttcttcctctaacGGTATATGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120510281 214 - 121039945 ctcagtcatttgccatccactgcccctgccctgacc---ctcggctataaactacccccaggcccctgctgtacttggagttgagctccatctctc-tcccccactgcaaaatcccagcgcagtggccccaggcccacctcgatggttctgaataaagccttcctcaccgtgcc-tgacaagggtcattcaaaacatttcttcctctaacaGTATATGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179463481 213 - 180051392 ctcagtcattttccacccacggcccctgccctcatc---ctcggctatgaact-ccccctggtcgctgctgtacttggagctgagctccatctctc-ttccccactgcaaaatcccagcactgtgaccccaggcccacctcgatggctctgaataaagccttcctccccgtgcc-tgacgagggtcactcagaacatttcttcctccaacaGTACACGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181194600 213 - 181584905 ctcagtcattttccacccactgcccctgccctcatc---ctcggctatgaact-ccccctggtcgctgctgtacttggagctgagctccatctctc-ttccccactgcaaaatcccagcactgtgaccccaggcccacctcgatggctctgaataaagccttcctccccgtgcc-tgacgagggtcattcagaacatttcttcctccaacaGTACACGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      189454 213 -   1764207 ctcagtcattttccacccactgcccctgccctcatc---ctcggctatgaact-ccccctggtcgctgctgtacttggagctgagctccatctctc-ttccccactgcaaaatcccagcactgtgaccccaggcccacctcgatggctctgaataaagccttcctccccgtgcc-tgacgagggtcattcagaacatttcttcctccaacaGTACACGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      204579 213 -  16742782 ctcagtcattttccacccactgcccctgccctcacc---ctcggctatgaact-ccccctggccgctgctgtacttggagctgagctccatctctc-tcccccactgcaaaatcccagcactgtgaccccaggcccacctcgatggctctgaataaagccttcctccccgtgcc-tgacgagggtcattcagaacatttcttcctccaacaGTACACGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90513443 211 -  91010382 ctcagtcattttccacccactgcccc-gccctcatc---ctcggctaccaact-ccccct-gcccctgctgtacctggagccgagctccgtctctc-tcccccactgcaaaatcccagcactgtgaccctaggcccacctcgatggctctgaataaaggcttcctcaccgtgcc-tgacgagggtcattcaaaacatttcttcctCCCACAGTACACGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      104160 213 -    438239 ctcagtcattttccacccactgcccctgccctcatc---ctcggctatgaact-ccccctggttgctgctgtacttggagctgagctccatctctc-tcccctactgcaaaatcccagcactgtgaccccaggcccacctcgatggctctgaataaagccttcctcaccgtgcc-tgacgagggtcattcaaaacatttcttcctccaacaGTACACGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      136184 213 -    514179 ctcagtcattttccatccactgcccctgccctcatc---ctcggctataaact-ccccctagcccctgctgtacttggagctgagctctatctctc-tcccccactgcaaaatcccagcactgtgaccctaagcccacctcaatggctctgaataaagccttcctcaccgtgcc-tgacaagggtcattcaaaacatttcttcctctaacaGTACACGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203786061 212 + 204313951 ctcagtca-tttccatccactgccct-accctgatc---ctcagctataaact-ccccttggccccggtcgcacttgcagctgagctccagctctcttcccccactgcaaaatcccagcacagtggcctgaggcccgcatcgatggttctgaacaaagccttcctcactgtgcc-tgacaagggtcattcaatacatttcttcctctaacaATGCATGT
i calJac3.chr2             C 0 I 2165
s saiBol1.JH378155          15948121 211 +  16417988 ctcagtcattttccatccactgcccc-accctgatc---ctcagctataaact-ccccttggcccctgccgcacttgca-ttgagctccatctctc-tcccccactgcaaaatcccagcacgggggccccaggcccgcctcgacggttctgaacaaagccttcctcactgtgcc-tgacaagggtcattcaatacagtccttcctctaacaATACATGT
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       25521 211 +    298490 ctcagtcattttccatccactgtccc-accctgatc---ctcggctataaact-ccccttggcccctgccccacttgcagctgagctccatctctc--tccccactgcaaaatcccagcatggtggccccaggcccgcctcaatggttctgaacaaagcctttctcactgtgcc-tgacaagggtcattcaatacagtccttcctctaacaACGCATGT
i cebCap1.NW_016108158v1   I 95 C 0
s aotNan1.NW_018503740v1    25344592 212 -  25620257 ctcagccactttccacccactgcccc-accctgatc---ctcgactataaact-gccctcggcccccacctcacctgcagctgggccccatctctc-tcccccacggcaaaatcccagcacagtggccccaggcccgcctccatggctctgaacaaagccttccccaccgtgcc-tggcaagggtcattcaatacattccttcctctaacaATACACGT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1838272 174 -   2165740 gatagggactttcc-tctactgacctcacacctgcctggctcaaatgtatgtg-tcctc--------actgtattggaagttgagctctgtcgctc-tcccccactgcaagatctcgctacactgatcct------------------------------taccttgccatgccttaacaaggggcactgaataaacttcctc----aATAatacacat
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11679540  50 +  42124431 I

a score=957941.000000
s hg38.chr5_KI270793v1_alt      8448  97 +    126136 AAAAAGAT-----TGAAAGACAAACTTTAACACATGTGTCCTATTGTGGAATAAATCCCTTTATTTTCCCTCTTACACATTTCTGTATTTT-CAGCTTTTCTC
s panTro5.chr5             181274256  97 - 181907262 AAAAAGAT-----TGAAAAATAAATGTTAACACATGTGTCCTATTGTGGAATAAATCCCTTTATTTTCCCCCTTACACATTTCTGTATTTT-CAGCTTTTCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182995691  97 - 183735486 AAAAAGAT-----TGAAAGACAAACGTTAACACATGTGTCCTATTGTGGAATAAATCCCTTTATTTTCCCCCTTACACATTTCTGTATTTT-CAGCTTTTCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86248  97 +    698298 AAAAAGAT-----TGAAAGACAAACGTTAACACATGTGTCCTATTGTGGAATAAATCCCTTTATTTTCCCCCTTACACATTTCTGTATTTT-CAGCTTTTCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120510495  97 - 121039945 AAAAAGAT-----TGAAGGACAAATGTTAACACAAGTGTCCTATTGTGGAATAAATCCCTTTATTTTCCCCCTTACACATTTCTGTATTTT-CAGCTTTTCTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179463694  95 - 180051392 AAAAAGAC-----TGAGAGACAAATGCTAACAT--GTGTCCTATTGTGGAATAAATCCCTTTACTTTCCCTCTTACACATTTCTGTATTTT-CAGCTTTTCTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181194813  95 - 181584905 AAAAAGAC-----TGAGAGACAAATGCTAACAC--GTGTCCTATTGTGGAATAAATCCCTTTACTTTCCCTCTTACACATTTCTGTATTTT-CAGCTTTTCTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      189667  95 -   1764207 AAAAAGAC-----TGAGAGACAAATGCTAACAC--GTGTCCTATTGTGGAATAAATCCCTTTACTTTCCCTCTTACACATTTCTGTATTTT-CAGCTTTTCTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      204792  95 -  16742782 AAAAAGAC-----TGAGAGACAAATGTTAACAC--GTGTCCTATTGTGGAATAAATCCCTTTACTTTCCCTCTTACACATTTCTGTATTTT-CAGCTTTTCTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90513654  95 -  91010382 AAAAAGAC-----TGAGAGTCAAATGTTAACAC--ATGTCCTATTGTGGAATAAATCCCTTTACTTTCCCTCTTACACATTTCTGTATTTT-CAGCTTTTCTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      104373  95 -    438239 AAAAAGAC-----TGAGAGACAAATGTTAACAT--GTGTCCTATTGTGGAATAAATCCCTTTACTTTCCCTCTTACACATTTCTGTATTTT-CGGCTTTTCTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      136397  95 -    514179 AAAAAGAC-----TGAGAGACAAATGTTAACAC--GAGTCCTATTGTGGAATAAATCCCTTTACTTTCCCTCTTACACATTTCTGTATTTT-CAGCTTTTCTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203788438  97 + 204313951 AAAAAGAC-----TGAAAGACAAACATTAATGCATGTGTCCTACTGTGGAATAAATCCCTCTATGATCCCCCTTACACATTTCTGTATTTC-CAACTTTTCTT
i calJac3.chr2             I 2165 C 0
s saiBol1.JH378155          15948333  97 +  16417988 AAAAAGAC-----TGAAAGACAAACATTAACCCATGTGTCCTACTGGGGACTAAATCCCTCTATTATCCCTGTTACACATTTCTGTACTTC-CAACTTTTCTT
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1       25732  95 +    298490 AAAAAGAC-----CGAAAGACAAATGTTAA--CACGTGTACTACTGCGGACTAAGTCCCTTGATTATCCCCTTCACACATTTCTGTACTTC-CAACCTTTCTT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25344804  97 -  25620257 AAAAAGAC-----TGAAAGACAAACGTTAACACACGTGTCCTACTGTGGAATAAATCCCTCTATTATCCCCCTTACACATTTCTGTATTTC-CAACTTTTCTT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1838446 103 -   2165740 aaaaacacagaaaggaaagacaaatgttaacacatttatcccactgtgggataaatccctttatcctccccctcctgcttttctatattttccaagttttctt
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11679540  50 +  42124431 I

a score=2255228.000000
s hg38.chr5_KI270793v1_alt      8545 276 +    126136 AGAGAGATAT---GTATCCTCGTAATCTGAAAGAGGCACCTAGAA-CTCAGTGCAACTCCTTTGGAGTTGGAATATCAGCACTGAC-----GAGCAAGGAACGTACCTGAAGTTTCGGCTTATGTTTATCTCTACAATACCTCCAAGCCCACACGCTTCTTCCCACCTTTACTGCCTCTCCCTCCAAAACCGTCTCTCCCCAGGAACACCCCTCTACTTCATCTCCCGCCTCCACTTCTGGCTGCTCAATTCTGTCACCCCTTGCAGCC-----------ATCACCATCTGAAAC-C
s panTro5.chr5             181274353 276 - 181907262 AGAGAGATAT---GTATCCTCGTCATCTGAAAGAGGCACCTAGAA-CTCAGTGCAACTCCTTTGGAGTTGGAATATCAGCACTGAC-----GAGCAAGGAACGTACCTGAAGTTTCAGCTTATGTTTATCTCTACAATATCTCCAAGCCCACACACTTCTTCCCACCTTTACTGCCTCTCCCTCCAAAACCGTCTCTCCCCAGGAACACCCCTCTACTTCATCTCGCACCTCCACTTCTGGCTGCTCAATTTTGTCACCCCTTGCAGCC-----------ATCACCATCTGAAAC-C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182995788 276 - 183735486 AGAGAGATAT---GTATCCTCGTAATCTGAAAGAGGCACCTAGAA-CTCAGTGCAACTCCTTTGGAGTTGGAATATCAGCACTGAC-----GAGCAAGGAACGTACCTGAAGTTTCAGCTTATGTTTATCTCTACAATACCTCCAAGCCCACACGCTTCTTCCCACCTTTACTGCCTCTCCCTCCAAAACCGTCTCTCCCCAGGAACACCCCTCTACTTCATCTGGCGCCTCCACTTCTGGCTGCTCAATTCTGTCACCCCTTGCAGCC-----------ATCACCATCTGAAAC-C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86345 276 +    698298 AGAGAGATAT---GCATCCTCGTAATCTGAAAGAGGCACCTAGAA-CTCAGTGCAACTCCTTTGGAGTTGGAATATCAGCACTGAC-----GAGCAAGGAACGTACCTGAAGTTTCAGCTTGTGTTTACCTCTACAATGCCTCCAAGCCCACACGCTTCTTCCCACCTTTACTGCCTCTCCCTCCAAAACCGTCTCTCCCCAGGAACACCCCTCTACTTCATCTCCCGCCTCCACTTCTGGCTGCTCAATTCTGTCACCCCTTGCAGCC-----------ATCACCATCTGAAAC-C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120510592 275 - 121039945 GGAGAGATAT---GTACCCTCGTAATCTGAAAGAGGCACCTAGAA-CCCAGTGCAATTCCTTTGGAGGTGGAATATCAGCACTGAC-----AAGCAAGGAACGTACCTGAAGTTTCAGCTTATGTTTATCTCTACAATACCTCCAAGCCCACACGCTTCTTCCCACCTTTACTGCCTCTCCCTCCAAAACCGTCTCTCCCCAGGAACA-CTTTCTAAACCATCTCCCGCCTCCACTTCTGGCTGCTCAATTCTGTCACCCCTTGCAGCC-----------ATCACCATCTGAAAC-C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179463789 264 - 180051392 AGAGAGATAT---GTATCCTCGTAATCTGAAAAAGGCACCTAGAA-CCCAGTACAACTCCTTTGGAGTTGGACTACCAGCACTGAC-----GAGCAAGGAATGTACCTGAAGTTTCAGCTTATGTTTATCTCTGCAGTACCTCCAGG-CCACACGCTTCTTCCCACCTTTACTG------CCTCCAAAACCACCTCTCCCCAGGAACCCCC----AATTCATCTCCCGCCCCCAC-TCCGGCTGCTGAGTTCCGTCACGCCTTGCAGCC-----------ATCACCATCCGAAAC-C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181194908 264 - 181584905 AGAGAGATAG---GTATCCTCGTAATCTGAAAAAGGCACCTAGAA-CCCAGTACAACTCCTTTGGAGTTGGACTATCAGCACTGAC-----GAGCAAGGAATGTACCTGAAGTTTCAGCTTATGTTTATCTCTGCAGTACCTCCAGG-CCACACGCTTCTTCCCACCTTTACTG------CCTCCAAAACCACCTCTCCCCAGGAACCGCC----AATTCATCTCCCGCCCCCAC-TCCGGCTGCTGAGTTCCGTCACGCCTTGCAGCC-----------ATCACCATCCGAAAC-C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      189762 264 -   1764207 AGAGAGATAT---GTATCCTCGTAATCTGAAAAAGGCACCTAGAA-CCCAGTACAACTGCTTTGGAGTTGGACTATCAGCACTGAC-----GAGCAAGGAATGTACCTGAAGTTTCAGCTTATGTTTATCTCTGCAGTACCTCCAGG-CCACACGCTTCTTCCCACCTTTACTG------CCTCCAAAACCACCTCTCCCCAGGAACCCCC----AATTCATCTCCCGCCCCCAC-TCCGGCTGCTGAGTTCCATCACGCCTTGCAGCC-----------ATCACCATCCGAAAC-C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      204887 266 -  16742782 AGAGAGATAT---GTATCCTCGTAATCTGAAAAAGGCACCTAGAA-CCCAGTACAACTCCTTTGGAGTTGGACTATCAGCACTGAC-----GAGCAAGGAATGTACCTGAAGTTTCAGCTTATGTTTATCTCTGCAATACCTCCAGG-CCACACGCTTCTTCCCACCTTTACTG------CCTCCAAAACCACCTCTCCCCAGGAACCCCC--CTAATTCATCTCCCGCCTCCAC-TCCGGCTGCTCAGTTCCGTCACGCCTTGCAGCC-----------ATCACCATCCGAAAC-C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90513749 270 -  91010382 AGACAGATAT---GTATCCTCGTAATCTGAAAAAGGCACCTAGAA-CCCAGTACAATTCCTTTGGAGTTGGACTATCAGCACTGAT-----GAGCAAGGAATGTACCTGAAGTTTCAGCTTATGTTTATCTCTGCAGTACCTCCAGGCCCACACGCTTCTTCCCACCTTTACTG------CCTCCAAAACCATCTCTCCCCAGGAACACCCCTCTAATTCATCTCCCGCCTCCACTTCTGGCTGCTCAATTCTGTCACGCCTTGCAGCC-----------ATCACCATCCGAAAC-C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      104468 264 -    438239 AGAGAGAGAT---GTATCCTCGTAATCTGAAAAAGGCACCTAGAA-CCCAGTACAACTCCTTTGGAGTTGGACTATCAGCACTGAC-----GAGCAAGGAATGTACCTGAAGTTTCAGCTTATGTTTATCTCTGCAGTACCTCCAGG-CCACACGCTTCTTCCCACCTTTACTG------CCTCCAAAACCACCTCTCCCCAGGAACCCCC----AATTCATCTCCCGCCTCCAC-TCCGGCTGCTCAGTTCCGTCACGCCTTGCAGCC-----------ATCACCATCCGAAAC-C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      136492 265 -    514179 ----AGATAT---ATATCCTCGTAATCTGAAAAAGGCACCTAGAA-CCCAGTACAACTCCTTTGGAGTTGGACTATCAGCACTGAC-----GAGCAAGGAATGTACCTGAAGTTTCAGCTTATGTTTATCTCTGCAATACCTCCAGGCCCACATGCTTCTTCCCACCTTTACTG------CCTCCAAAACCATCTCTCCCCAGGAACACCCCTC-TATTCATCTCCCGCCTCCACTTCTGGCTGCTCAATTCTGTCACGCCTCGCAGCC-----------ATCACCATCTGAAAC-C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203788535 250 + 204313951 AAATATA------GGACCCTCATCATCTGAAAGAGGCACCGAGAAACCCAGTGCGACTCATTCGGAGTTGCAATGTCAGCACTGAG-----GAGCAGGGACCGTA-CGGGGGTTTCAGCTTGTG-CTATGTCCACAGCACCTCCAGGCCCATGCCCTTCCTGCCACCTTTACTGTCTCTC-------------CTCTCACCAGGA-------ACTAATTCATCTCCCGCTTCCAC-TCTGGCTGCTCAATTCCGTCACCCCTCGCAGCC-----------ATCACCATCTGAAAC--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15948430 243 +  16417988 ---------------------ATCATCTGAAAGAGGCACCGAGAACCCCAGTGCGACCCATTCGGAGTTGGAATGTCAGCACTGAG-----GAGCAGGGACCGCACCTGGGGTTTTAGCT--------------CAGTCCCTCCAAGCCCACACCCTGCCTTCCACCTCGATTGCCTCTCCCTCCCAAACCATCTCTCACCAGGAACGCCTCACTAATTCATCTCCTGCTTCCAC-TCTGGCTGCTCAATTCTGTCACCCCTCACAGCC-----------ATCACCATCTGAAAC--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       25827 268 +    298490 AGATACA------GGACCCTCATCACCTGAAAGAGGCAC--AGAAACCCAGGGCGACTCACTCGGAGTTGGAATGTCAGCACTGAG-----GAGCAGGGACCGCACCTGGGGTTTTAGCTCATG-TTATTTCC-CCATACCTCCAAGCCCACGCTCTTCCTTCCGCCTTTACTGCCTCTCCCTCCCAAACCGTCTCTCACCAAGAACGCCTCACTAATTCATCTCCCGCTTCCAC-TCTGGCTGCCCAATTCCATCACCCCTCACAGCC-----------ATCGCCATCTGAAAC--
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25344901 270 -  25620257 AGATATA------GGACCCTCATCATCTGAAAGAGGCACCGAGAAACCCAGTGCGACTCATTCGGAGTTGGAATGTCAGCACTGAG-----GAGCAGGGACCGTCCCTGGGGTTTTAGCT--TG-TTATTTCCACAGTACCTCCAAGCCCACGCCCTTCCTTCCACCTTTACTGCCTCTCCCTCCCAAACCGTCTCTCACCAGGAACACCTCACTCATTCACCTCCCGCTTCCAC-TCTGGCTGCTCAGTTCCGTCACCCCTCGCAGCC-----------ATCACCGTCTGAAACC-
i aotNan1.NW_018503740v1   C 0 I 406
s otoGar3.GL873745           1838549 228 -   2165740 agagagagctatagtaacctcataatctgaaaGTATCATTTAGGAAAAGAACGCAACTCATTCA-------AATGTGAACACTGATGCCAAGAAAGGGGATTGCATTTGAAGTCTCAGCTCACA------GCTCAAGTTCCTCTGGTGTTGAG---TCTGTCACGCCT------------TCCCCAAGACA-----CCAGCAGGAGTCCCCTCCTGACTGACC-CCCGGGCCCAT----GGCTGCT-------------------GCCC-----------AATGCCATGTGAAAC-T
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11679590 266 +  42124431 AGTGAGCTATA--GCAACCTCAGAATCTGAAAAAATCAT---GAA-AATAATGTAACTCGTTCAAAGTTTGAATACCGGTAAAGAC-----GAATTG---------CTAAGGTTTTAGCT--TGTTTACCTTCAAAATGTCTCTGAGCCCTTGCCCTGCTGCCCATCCCCTCTGCTTCT-CCCCTCAAACCCTCTCCCACCACCAATAT------AAGTGGGCTCGTACTTTGACAGCTGGCTGTTCAACTCCATTGC-CCATGCAGCCTTCACTTAGAGATCACAATCTGAAAC-C
i canFam3.chr34            I 50 C 0

a score=215396.000000
s hg38.chr5_KI270793v1_alt      8821 24 +    126136 CACTCGTCGGGTAACCTGTCTGCT
s panTro5.chr5             181274629 23 - 181907262 CA-TCGTCGGGTAACCTGTCTGCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996064 22 - 183735486 CA-TCGTCGGGTAACCTGTCTGC-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86621 24 +    698298 CACTCGTCGGGTAACCTGTCTGCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120510867 24 - 121039945 CACTAGCCGGGTAACCTCTCTGCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464053 24 - 180051392 CACTAGTCGGGTAGCCTGTCTGCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195172 24 - 181584905 CACTAGTCAGGTAGCCTGTCTGCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190026 24 -   1764207 CACTAGTCGGGTAGCCTGTCTGCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205153 24 -  16742782 CACTAGTCGGGTAGCCTGTCTGCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514019 24 -  91010382 CACTCGTCGGGTAACCTGTCTGCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      104732 24 -    438239 CACTAGTCGGGTAACCTGTCTGCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      136757 24 -    514179 CACTAGTCGGGTAACCTGTCTGCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203788785 24 + 204313951 CACCAGCCGGGTAACCTGTCTGCT
i calJac3.chr2             C 0 I 2
s saiBol1.JH378155          15948673 24 +  16417988 CACCAGCCGGGTAACCTGTCTGCT
i saiBol1.JH378155         C 0 I 2
s cebCap1.NW_016108158v1       26095 24 +    298490 CACCAGCCGGGTAACCTGTCTGCT
i cebCap1.NW_016108158v1   C 0 I 874
s otoGar3.GL873745           1838777 17 -   2165740 -------CAGTCAGCCTGTCCACT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11679856 24 +  42124431 CACTGGTTAGCTAACCCGACTGCT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I

a score=123781.000000
s hg38.chr5_KI270793v1_alt      8845 21 +    126136 GTCCT-CCTGTTACAACTGTGG
s panTro5.chr5             181274652 21 - 181907262 GTCCT-CCTGTTACAACTGTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996086 21 - 183735486 GTCCT-CCTGTTACAACTGTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86645 21 +    698298 GTCCT-CCTGTTACAACTGTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120510891 21 - 121039945 GTCCT-CCTGTTACAACTGTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464077 21 - 180051392 GGCCT-CCTCTTACACCTGTGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195196 21 - 181584905 GGCCT-CCTCTTACACCTGTGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190050 21 -   1764207 GGCCT-CCTCTTACACCTGTGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205177 21 -  16742782 GTCCT-CCTCTTACACCTGTGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514043 21 -  91010382 GTCCT-CCTCTTACACCTGTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      104756 21 -    438239 GTCCT-CCTCTTACACCTGTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      136781 21 -    514179 GTCCT-CCTCTTACACCTGTGG
i colAng1.NW_012118799v1   C 0 I 37
s calJac3.chr2             203788811 20 + 204313951 GTCCT-CCCCCAACGCCTCGG-
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          15948699 20 +  16417988 GTCCT-CCCCCCACACCTCGG-
i saiBol1.JH378155         I 2 C 0
s otoGar3.GL873745           1838794 21 -   2165740 CTGTC-CCCAGCACACCTGAGG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11679880 21 +  42124431 -TCATGCCAGTCACAGGCGAGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e cebCap1.NW_016108158v1       26119 874 +    298490 I

a score=116076.000000
s hg38.chr5_KI270793v1_alt      8866 17 +    126136 TCGGGCTGTGCAAGCTC
s panTro5.chr5             181274673 17 - 181907262 TCAGGCTGTGCAAGCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996107 17 - 183735486 TCAGGCTGTGCAAGCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86666 17 +    698298 TCAGGCTGTGCAAGCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120510912 17 - 121039945 TTGGGCTGTGCAAGCTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464098 17 - 180051392 TCGGGCTGTGCAAGCTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195217 17 - 181584905 TCGGGCTGTGCAAGCTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190071 17 -   1764207 TCGGGCTGTGCAAGCTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205198 17 -  16742782 TCGGGCTGTGCAAGCTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514064 17 -  91010382 TCACGCTGTGCAAGCTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      104777 17 -    438239 TCGGGCTGTGCAAGCCC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203788831 17 + 204313951 TGGGACCGTGCGAGCTC
i calJac3.chr2             C 0 I 24
s saiBol1.JH378155          15948719 17 +  16417988 TGGGACCGTGCGAGCTC
i saiBol1.JH378155         C 0 I 24
s otoGar3.GL873745           1838815 16 -   2165740 -GCACCTTTGCATGCTC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11679901 15 +  42124431 --GCACAGTGCATGCTC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e cebCap1.NW_016108158v1       26119 874 +    298490 I
e colAng1.NW_012118799v1      136802 37 -    514179 I

a score=66120.000000
s hg38.chr5_KI270793v1_alt      8883 7 +    126136 CACGCAC
s panTro5.chr5             181274690 7 - 181907262 CACGCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996124 7 - 183735486 CACGCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86683 7 +    698298 CACGCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120510929 7 - 121039945 CGCGCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464115 7 - 180051392 CATGCAC
i rheMac8.chr6             C 0 I 23
s macFas5.chr6             181195234 7 - 181584905 CATGCAC
i macFas5.chr6             C 0 I 23
s macNem1.NW_012012389v1      190088 7 -   1764207 CATGCAC
i macNem1.NW_012012389v1   C 0 I 23
s cerAty1.NW_012009470v1      205215 7 -  16742782 CATGCAC
i cerAty1.NW_012009470v1   C 0 I 23
s chlSab2.chr4              90514081 7 -  91010382 CATGCAC
i chlSab2.chr4             C 0 I 23
s manLeu1.NW_012110441v1      104794 7 -    438239 CATGCAC
i manLeu1.NW_012110441v1   C 0 I 23
s calJac3.chr2             203788872 7 + 204313951 CACGCAC
i calJac3.chr2             I 24 C 0
s saiBol1.JH378155          15948760 7 +  16417988 CACGCAC
i saiBol1.JH378155         I 24 C 0
s cebCap1.NW_016108158v1       26993 7 +    298490 CACGCAC
i cebCap1.NW_016108158v1   I 874 C 0
s otoGar3.GL873745           1838831 7 -   2165740 TGTGCAC
i otoGar3.GL873745         C 0 I 23
s canFam3.chr34             11679916 7 +  42124431 TATGCAC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e colAng1.NW_012118799v1      136802 37 -    514179 I

a score=853187.000000
s hg38.chr5_KI270793v1_alt      8890  90 +    126136 ---------------------CCCA-TAAGCAGTCACTACATCAACATTAATTACAAGATGAAAGTTTCCGTAATCAAAAAGGCAGTTTAGATCCGAATACATCAAT--------ACTTT
s panTro5.chr5             181274697  90 - 181907262 ---------------------CCCA-TAAGCAGTCATTACATCCACGTTAACTACAAGATGAAAGTTTCCATAATCAAAAAGGCAGTTTCGATCCGAATACATCAAT--------ACTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996131  90 - 183735486 ---------------------CCCA-TAAGCAGTCATTACATCCACGTTAACTACAAGATGAAAGTTTCCATAATCAAAAAGGCAGTTTAGATCCGAATACATCAAT--------ACTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86690  90 +    698298 ---------------------CCCA-TAAGCAGTCATTACATCAACGTTAACTACAAGATGAAAGTTTCCATAATCAAAAAGGCAGTTTAGATCCGAATACATCAAT--------ACTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120510936  90 - 121039945 ---------------------CCCA-TAAGCAGTCATTACATCAACGTTAACTACAAGATGAAAGTTTCCATAACCAAAAAGGCAGTTTAGATCTGAATGCGTCAAT--------CCTTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464145  90 - 180051392 ---------------------CTCA-TAAGCAGTCATTAGATCAACGTTAACTACAAGATCAAAGTGTCCACAATCAAAAAGACAGTTTAGATCTGAATACACCAAC--------ACTTT
i rheMac8.chr6             I 23 C 0
s macFas5.chr6             181195264  90 - 181584905 ---------------------CTCA-TAAGCAGTCATTAGATCAACGTTAACTACAAGATCAAAGTTTCCACAATCAAAAAGACAGTTTAGATCTGAATACACCAAC--------ACTTT
i macFas5.chr6             I 23 C 0
s macNem1.NW_012012389v1      190118  90 -   1764207 ---------------------CTCA-TAAGCAGTCATTAGATCAACGTTAACTACAAGATCAAAGTTTCCACAATCAAAAAGACAGTTTAGATCTGAATACACCAAC--------ACTTT
i macNem1.NW_012012389v1   I 23 C 0
s cerAty1.NW_012009470v1      205245  90 -  16742782 ---------------------CTCA-TAAGCAGTCATTAGAGCAACGTTAACTACAAGATCAAAGTTTCCACAATCAAAAAGACAGTTTAGATCTGAATACATCAAC--------ACTTT
i cerAty1.NW_012009470v1   I 23 C 0
s chlSab2.chr4              90514111  90 -  91010382 ---------------------CTCA-TAAGCAGTCATTAGATCAACGTTAACTACAAGATCAAAGTTTCCATAATCAAAAAAACAGTTTAGATCTGAATACATCAAC--------ACTTT
i chlSab2.chr4             I 23 C 0
s manLeu1.NW_012110441v1      104824  90 -    438239 ---------------------CTCA-TAAGTAGTCATTAGATCAACGTTAACTACAAGATCAAAGTTTCCACAATCAAAAAGACAGTTTAGATCTGAATACATCAAC--------ACTTT
i manLeu1.NW_012110441v1   I 23 C 0
s colAng1.NW_012118799v1      136839  90 -    514179 ---------------------CTCA-TAAGCAGTCATTAGATCAACGTTAGCTACAAGATGAAAGTTTCCATAATCAGAAAGACAGTTTAGATCTGAATACTTCAGT--------ACTTT
i colAng1.NW_012118799v1   I 37 C 0
s calJac3.chr2             203788879  90 + 204313951 ---------------------CCCA-TAAGCAGCCATCAGAGCAACGTCAACTACAAGATGAAAGTTTCCACAGCCAAAAGGACAGTTTAGATCTGAATACATCAAT--------ACTTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15948767  98 +  16417988 ---------------------CCCA-TAAGCAGCCATTAGAGCAACGTCAAACACAAGGTTAAAGTTTCCACAGCCAAAAAGACAGTTTAGATCTGAATACATCAATACACCAAGACTTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       27000  90 +    298490 ---------------------CCCA-CAAGCAGCCATTAGACCGACATCAACTACAAGATGAAAGTTTCCACAGCCAAAAAGACAGTTTACATCTGAATACGTCAAT--------ACTTT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1838861  89 -   2165740 ---------------------CTCA-ATAGCAACCATCAGATCAATGT-AACTGCAAAAATAAAGTTTCCATAATTAAAAAGGCAGTTGGGATCCGAATACACCAAT--------ACTTT
i otoGar3.GL873745         I 23 C 0
s canFam3.chr34             11679923 110 +  42124431 CACATGCCTCTGCATGGCACACTCAGTAAATGACCATGAAGTCAATGTT-GCTACAAAGTT-AAGTTTCTGTAATCAAAAAGACAGTTTGGGTCTGGGCACACCAAT--------GTTTT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I

a score=242425.000000
s hg38.chr5_KI270793v1_alt      8980 27 +    126136 CCTGGGAACATTTATGTTTTAGAATAT
s panTro5.chr5             181274787 27 - 181907262 CCTGGGAACATTTATGTTTTAGAATAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996221 27 - 183735486 CCTGGGAACATTTATGTTTTAGAATAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86780 27 +    698298 CCTGGGAACATTTATGTTTTAGAATAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511026 27 - 121039945 CCTGGGAACATTTATGTTTTAGAATAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464235 27 - 180051392 CCCAGGAACATTTATGTTTTAGAATAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195354 27 - 181584905 CCCAGGAACATTTATGTTTTAGAATAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190208 27 -   1764207 CCCAGGAACATTTATGTTTTAGAATAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205335 27 -  16742782 CCCAGGAACATTTATGTTTTAGAATAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514201 27 -  91010382 CCCAGGAACATTTATGTTTTAGAATAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      104914 27 -    438239 CCCAGGAACATTTATGTTTTAGAATAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      136929 27 -    514179 CCCAGGAACATTTATGTTTTAGAATAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203788969 27 + 204313951 CCCAGGAAAATTTAAATGTTAAAATAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15948865 27 +  16417988 CCCGGGAAAATTTAAATGTTAAAATAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       27090 27 +    298490 CCCAGGAAAATTTAAATGTTAAAATAT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1838950 27 -   2165740 CCTAGGAGCATTTACATTTTAAAATGT
i otoGar3.GL873745         C 0 I 3
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e canFam3.chr34             11680033  0 +  42124431 C

a score=70694.000000
s hg38.chr5_KI270793v1_alt      9007 19 +    126136 Gttttggtttttttgtttt--------
s panTro5.chr5             181274814 18 - 181907262 Gttttggtttttt-gtttt--------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996248 18 - 183735486 Gttttggtttttt-gtttt--------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86807 19 +    698298 GTTTTGGAttttttgtttt--------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511053 19 - 121039945 Gttttggtttttttgtttc--------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464262 18 - 180051392 ATTTTGGG-tttttgtttt--------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195381 19 - 181584905 ATTTTGGGttttttgtttt--------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190235 19 -   1764207 ATTTTGGGttttttgtttt--------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205362 19 -  16742782 GTTTTGGGttttttgtttt--------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514228 19 -  91010382 GTTTTGGGttttttgtttt--------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      104941 19 -    438239 GTTTTGGGTTTTTTGTTTT--------
i manLeu1.NW_012110441v1   C 0 T 15867
s colAng1.NW_012118799v1      136956 19 -    514179 GTTTGGGGttttttgtttt--------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203788996 16 + 204313951 Gtt------tttttggtgttt-----t
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15948892 20 +  16417988 Gtt------tttttgttttttggtg-t
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       27117 21 +    298490 Gtt------tttttgttttttggtgtt
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e otoGar3.GL873745           1838977  3 -   2165740 I
e canFam3.chr34             11680033  0 +  42124431 C

a score=1298228.000000
s hg38.chr5_KI270793v1_alt      9026 155 +    126136 tgttt--tcagatggag-tcttactctgttgcccatgctggagtaccgtggtgcgatctcggctcactgcaacctccacctcctaggttcaagtgattctcccgcctcagtctcctgagtagctgggattacagggacacgccaccacatccgg------------------------------------ctaa
s panTro5.chr5             181274832 155 - 181907262 tgttt--tcagatggag-tcttactctgttgcccatgctggagtaccgtggtgcgatctcggctcactgcaacctccacctcctaggttcaagtgattctcccacctgagtctcctgagtagctgggattacagggacctgccaccacatccgg------------------------------------ctaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996266 155 - 183735486 tgttt--tcagatggag-tcttactctgttgcccatgctggagtaccgtggtgcgatctcggctcactgcaacctccacctcctaggttcaagtgattctcccgcctgagtctcctgagtagctgggattacagggacctgccaccacatccgg------------------------------------ctaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       86826 191 +    698298 tgttt--tcagatggag-tcttactctgttgcccatgctggagtactgtggtgcgatctcggctcactgcaacctccacctcctaggttcaagtgattctcccgcctcagtctcctgagtagctgggattacagggacacgccaccacatccggctaatttttgtatttttagtagagatggcgtctcTACTAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511072 191 - 121039945 tgttt--tgagatggag-tcttactctgttgcccaggctggagtaccatggtgcgatctcggctcactgcaacctccacctcctgggttcaagtgagtctcccgcctcagtctcctgagtagctgggattacagggacgcgccaccacatccggctaatttttgtatttttggtagagacggcgtttcTACTAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464280 191 - 180051392 tgttt--tgagatggag-tcttactctgctgcccaggctggagtgcagtggtgtgacctcggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagtctcctgaatagctaggattacagggacgtgccaccacatcccactaatttgtgtgtttttagtacagatggggtttcTACTAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195400 191 - 181584905 tgttt--tgagatggag-tcttactctgctgcccaggctggagtgcagtggtgtgacctcggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagtctcctgaatagctaggattacagggacgtgccaccacatcccactaatttgtgtgtttttagtacagatggggtttcTACTAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190254 191 -   1764207 tgttt--tgagatggag-tcttactctgctgcccaggctggagtgcagtggtgtgacctcggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagtctcctgaatagctaggattacagggacgtgccaccacaccccactaatttgtgtgtttttagtacagatggggtttcTACTAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205381 192 -  16742782 tgttt--tgagatggagttcttactctgctgcccaggctggagtgcagtggtgtgacctcggctcactgcaacctccacctcctaggttcaagtgattctcctgcctcagtctcctgaatagctaggattacagggacgtgccaccacatcccgctaatttgtgtgtttttagtagagatggtgtttcTACTAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514247 191 -  91010382 tgttt--tgagatggag-tcttactctgctgcccaggctggagtgcagtggtgcgacctcggctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagtctcctgaatagctaggattacagggacgtgccaccacatcccgctaatttgtgtatttttagtagagatggggtttcTACTAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       89093 191 -    438239 cgttt--tgagatggagttcttactctgctgcccaggctggagtgcagtggtgtgacctctgctcactgcaacctctacctcctgggttcaagtgattctcctgcctcagtctcctgaatagctaggattacagggacgtgccaccacatcccgctaatttgtgtgtttttagtagagat-gggtttctactaA
i manLeu1.NW_012110441v1   T 15867 C 0
s colAng1.NW_012118799v1      136975 191 -    514179 tgttt--tgagatggag-tcttactctgttgcccaggctggagtgcagtggtgcaacctcggctcactgcaacctccatctcctgggttcaactgattctcctgcctcagtctcctgaatagctaggattacagggacgtgccaccacatcccgctaattcgtgtatttttagtagaaacggggtttcTACTAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789012 155 + 204313951 ttttt--ggagacagag-tctcactctgttgcccaggctggaatgcagtggtttgatctcagctcaccacaacctccaccatccgggtacaagtgattctcctgtctcagcctcctgagtagctgggattataggtgcctgccaccatattcagctaa------------------------------------
i calJac3.chr2             C 0 I 30
s saiBol1.JH378155          15948912 157 +  16417988 tttttggggggacagag-tctcactctgttgcccaggctggagtgcagtggtttgatctcagctcactgcaacctccgccttcccggtacaagtgattctcctgtctcagcctcctgagtagctgggattacaggtgcctgccaccacatccagctaa------------------------------------
i saiBol1.JH378155         C 0 I 25
s cebCap1.NW_016108158v1       27138 155 +    298490 ttttt--ggagacagag-tctcactctgctgcccaggctggagtgcagtggtttcatctcagctcactgcaacctccaccttccgggtacaagtgattctcctgcctcagcctcctgagtagctgggattacaggtgcctgccaccacatccagctaa------------------------------------
i cebCap1.NW_016108158v1   C 0 I 103
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e otoGar3.GL873745           1838977   3 -   2165740 I
e canFam3.chr34             11680033   0 +  42124431 C

a score=115280.000000
s hg38.chr5_KI270793v1_alt      9181 19 +    126136 AACCCCACGTTTCCCTGTT
s panTro5.chr5             181274987 19 - 181907262 AACCCCACGTTTCCCTGTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996421 19 - 183735486 AACCCCACGTTTCCCTGTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87017 19 +    698298 AACCCCACGTTTCCCTGTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511263 19 - 121039945 AACCCCACGTTTCCCTGTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464471 19 - 180051392 AACCCCATGTTTCCCTGTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195591 19 - 181584905 AACCCCATGTTTCCCTGTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190445 19 -   1764207 AACCCCATGTTTCCCTGTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205573 19 -  16742782 AACCCCATGTTTCCCTGTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514438 19 -  91010382 AACCCCATGTTTCCCTGTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       89284 19 -    438239 AACCCCATGTTTCCCTGTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137166 19 -    514179 AACCCCATGTTTCCCTGTT
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e otoGar3.GL873745           1838977  3 -   2165740 I
e cebCap1.NW_016108158v1       27293 103 +    298490 I
e saiBol1.JH378155          15949069 25 +  16417988 I
e calJac3.chr2             203789167 30 + 204313951 I
e canFam3.chr34             11680033  0 +  42124431 C

a score=212402.000000
s hg38.chr5_KI270793v1_alt      9200 32 +    126136 TCCTCAGGTAGCCCTCAGGCATCGTCTCAGGT
s panTro5.chr5             181275006 32 - 181907262 TCCTCAGGTAGCCCTCAGGCATCATCTCAGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996440 32 - 183735486 TCCTCAGGTAGCCCTCAGGCATCATCTCAGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87036 32 +    698298 TCCTCAGGTAGCCCTCACGCATCATCTCAGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511282 29 - 121039945 TCCTCAGGTAGCCCTCAGGCA---TCTCAGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464490 32 - 180051392 TCCTCACGTAGCCCTCGGGCATCATCTCAGAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195610 32 - 181584905 TCCTCACGTAGCCCTCGGGCATCATCTCAGAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190464 32 -   1764207 TCCTCACGTAGCCCTCGGGCATCATCTCAGAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205592 32 -  16742782 TCCTCACGTAGCCCTCGGGCATCATCTCAGAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514457 32 -  91010382 TCCTCACGCAGCCCTCGGGCGTCATCTCAGAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       89303 32 -    438239 TCCTCACGTAGCCCTCGGGCATCATCTCAGAC
i manLeu1.NW_012110441v1   C 0 I 6883
s colAng1.NW_012118799v1      137185 32 -    514179 TCCTCACGTAGCCCTTGGGCATCATCTCAGAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                530045 32 - 204313951 TCCTCGCCTAGCTACTGGGCATCATCTCAGGC
i calJac3.chr2             n 30 C 0
s saiBol1.JH378155            471652 32 -  16417988 TCCTCGTCTAGCCACCGGGCATCATCTCAGGC
i saiBol1.JH378155         n 25 C 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e otoGar3.GL873745           1838977  3 -   2165740 I
e cebCap1.NW_016108158v1       27293 103 +    298490 I
e canFam3.chr34             11680033  0 +  42124431 C

a score=1183305.000000
s hg38.chr5_KI270793v1_alt      9232 167 +    126136 GCAGCTAAACAGCAGGATGCTGCCTGGTTTTGCCCCACTTGGAGG-CACACA-GAC-AAGCAGTTCATTGTCCCCCACACCCTGCCACCGGGACAGGGTCAGGAGGGGACAAGGTGCAGTGACCTTTGGCTCATGTTACTGAAAGAAAAGGGTTTCCGTGACAGTCTTGT
s panTro5.chr5             181275038 167 - 181907262 GCAGCTAAACAGCAGGACGCTGCCTGGTTTTGCCCCACTTGGAGG-CACACA-GAC-AAGCAGCTCATTGTCCCCCACACCCTGCCACCGGGACGGGGTCAGGAGGGGACAAGGTGCAGTGACCTTTGGCTCATGTTCCTGAAAGAAAAGGGTTTCCGTGACAGTCTTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996472 167 - 183735486 GCAGCTAAACAGCAGGACACTGCCTGGTTTTGCCCCACTTGGAGG-CACACA-GAC-AAGCAGCTCATTGTCCCCCACACCCTGCCACCGGGACAGGGTCAGGAGGGGACAAGGTGCAGTGACCTTTGGCTCATGTTCCTGAAAGAAAAGGGTTTCCGTGACAGTCTTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87068 168 +    698298 GCAGCTAAACAGCAGGACACTGCCTGGTTTTGCCCCACTTGGAGG-CACACG-GACAAAGCAGTTCATTGTCCCCCACACCCTGCCACCGGGACAGGGTCACGAGGGGACAAGGTGCAGTGACCTTTGGCTCATGTTCCTGAAAGAAAAGGGTTTCCGTGACAGTCTTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511311 168 - 121039945 GCAGCTAAACAGAAGGACGCTGCCTGGTTTTGCCCCACTTGGAGG-CACACAGGAC-AAGCAGCTCATTGTCCCCCATACCCTGCCACCGGGACAGGGTCAGGAGGGGACAAGGTGCAGTGACCTTTGGCTCATGTTCCTGAAGGAAAAGGGTTTCCGTGACAGTCTTAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464522 167 - 180051392 GCAGCTAAACAGCAGGACGCTGCGTGGTTCTGCCCCACTTGCAGG-CACACAGGAC-AAGCAGCTCATTGTCCCCTACACCCTGCCACCAGGACAGGGTCAGGAGGGGACAAGGTGCAGTGACTTTTGGCTCATGTTCCCGAAAGAAAAGCA-TTCCGTGACAGTCTTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195642 166 - 181584905 GCAGCTAAACAGCAGGACGCTGCGTGGTTCTGCCCCACTTGCAGG-CACACAGGAG-AAGCAGCTCATTGTCCCC-ACACCCTGCCACCAAGACAGGGTCAGGAGGGGACAAGGTGCAGTGACTTTTGGCTCATGTTCCTGAAAGAAAAGCA-TTCCGTGACAGTCTTGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190496 168 -   1764207 GCAGCTAAACAGCAGGACGCTGCGTGGTTCTGCCCCACTTGCAGGCCCCACAGGAC-AAGCAGCTCATTGTCCCCTACACCCTGCCACCAGGACAGGGTCAGGAGGGGACAAGGTGCAGTGACTTTTGGCTCATGTTCCCGAAAGAAAAGCA-TTCCGTGACAGTCTTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205624 167 -  16742782 GCAGCTAAACAGCAGGACGCTGCGTGGTTCTGCCCCACTTGCAGG-CACACAGGAC-AAGCAGCTCATTGTCCCCCACACCCTGCCACCAGGACAGGGTCAGGAGGGGACAAGGTGCAGTGACTTTTGGCTCATGTTCCCGAAAGAAAAGCA-TTCCGTGACAGTCTTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514489 167 -  91010382 GCAGCTAAACAGCAGGACGCCGCGTGGTTCTGCCCCACTTGCAGG-TACACAGGAC-AAGCAGCTCATTGTCCCCCACACCCTGCTACCGGCACAGGGTCAGGAGGGGACAAGGTGCAGTGACTTTTGGCTCATGTTCCCGAAAGAAAAGGG-TTCCGTGACAGTCTTGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96218 167 -    438239 GCAGCTAAACAGCAGGACGCTGCGTGGTTCTGCCCCACTTGCAGG-CACACAGGAC-AAGCAGCTCATTGTCCCCCACACCCTGCCACCAGGACAGGGTCAGGAGGGGACAAGGTGCAGTGACTTTTGGCTCATGTTCCCGAAAGAAAAGCA-TTCCGTGACAGTCTTGT
i manLeu1.NW_012110441v1   I 6883 C 0
s colAng1.NW_012118799v1      137217 167 -    514179 GCAGCTAAACAGCAGGACACTGCCTGGTTCTGTCCTACTTGCAGG-CACACAGGAC-AAGCAGCTCACTGTCCCCCACACCCTGCCACCAGAACAGGGTCAGGAGGGGACAAGGTGCAGTGACTTTTGGCTCATGTTCCTGAAAGAAAAGGG-TTCCGTGACAGTCTTGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                530077 166 - 204313951 ACAGCTAAACAGCAGGGCGCAGGCTGGTTGT-CCCCACTTGGAAG-CACACAGGAT-AGGCAGCTCTTTGTCCTCCACACCCTGCCACGGGGACAGGGTCAGGAGGGGATGAGGTGCAGTAACCTTCAGGTCACGATCCTGAAAGAGAAGGT-TTCCGTGGCAGTCCTGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155            471684 166 -  16417988 ACCGCTAAACAGCAGGGTGCAGCCTGGCTGT-CCCCACTTGGAAG-CACACAGGAT-AGCCAGCTCTTTGTCCCCCACACCCTGCCACGGGGACGGGGTCGGGAGGGGATGAGCTGCAGTGACCTCCAGGTCACGATCCTGAAAGAGAAGGT-TTCCGTGGCAGTCCTGT
i saiBol1.JH378155         C 0 n 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e otoGar3.GL873745           1838977   3 -   2165740 I
e cebCap1.NW_016108158v1       27293 103 +    298490 I
e canFam3.chr34             11680033   0 +  42124431 C

a score=16497.000000
s hg38.chr5_KI270793v1_alt      9399 2 +    126136 gg
s panTro5.chr5             181275205 2 - 181907262 gg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996639 2 - 183735486 gg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87236 2 +    698298 gg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511479 2 - 121039945 gg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464689 2 - 180051392 gg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195808 2 - 181584905 gg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190664 2 -   1764207 gg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205791 2 -  16742782 gg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514656 2 -  91010382 gg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96385 2 -    438239 gg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137384 2 -    514179 gg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                530243 2 - 204313951 AG
i calJac3.chr2             C 0 T 12897
s saiBol1.JH378155          15949094 2 +  16417988 gg
i saiBol1.JH378155         I 25 C 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e otoGar3.GL873745           1838977 3 -   2165740 I
e cebCap1.NW_016108158v1       27293 103 +    298490 I
e canFam3.chr34             11680033 0 +  42124431 C

a score=42420.000000
s hg38.chr5_KI270793v1_alt      9401 7 +    126136 tttcctg
s panTro5.chr5             181275207 7 - 181907262 tttcctg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996641 7 - 183735486 tttcctg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87238 7 +    698298 tttcctg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511481 7 - 121039945 tttcctg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464691 7 - 180051392 tttcctg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195810 7 - 181584905 tttcctg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190666 7 -   1764207 tttcctg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205793 7 -  16742782 tttcctg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514658 7 -  91010382 tttcctg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96387 7 -    438239 tttcctg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137386 7 -    514179 tttcctg
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15949096 4 +  16417988 tttc---
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25345171 406 -  25620257 I
e otoGar3.GL873745           1838977 3 -   2165740 I
e cebCap1.NW_016108158v1       27293 103 +    298490 I
e calJac3.chr2                530245 12897 - 204313951 T
e canFam3.chr34             11680033 0 +  42124431 C

a score=542283.000000
s hg38.chr5_KI270793v1_alt      9408 65 +    126136 accatgttggccaggctggtctcgaactcctgacctcaggtgatccatccacctcggcctcccaa
s panTro5.chr5             181275214 65 - 181907262 accacgttggccaggctggtctcgaactcctgacctcaggtgatccatccgcctcggcctcccaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996648 65 - 183735486 accacgttggccaggctggtcttgaactcctgacctcaggtgatccatccgcctcggcctcccaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87245 65 +    698298 accatgttggccaggctggtctcgaactcctgacctcaggtgatccatccgcctcggcctcccaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511488 65 - 121039945 accatgttggccaggctggtctcgaactcctgacctcaagtgatccatccacctcagcctcccaa
i nomLeu3.chr6             C 0 I 8
s rheMac8.chr6             179464698 65 - 180051392 accatgttggccaggccggtctcaaactcctgacctccagtgatccatccacctcagcctcccaa
i rheMac8.chr6             C 0 I 8
s macFas5.chr6             181195817 65 - 181584905 accatgttggccaggctggtctcaaactcctgacctccagtgatccatccacctcagcctcccaa
i macFas5.chr6             C 0 I 8
s macNem1.NW_012012389v1      190673 65 -   1764207 accatgttggccaggctggtctcaaactcctgacctccagtgatccatccacctcagcctcccaa
i macNem1.NW_012012389v1   C 0 I 8
s cerAty1.NW_012009470v1      205800 65 -  16742782 accgtgttggccaggctggtctcacactcctgacctccagtggtccatccgcctcagcctcctga
i cerAty1.NW_012009470v1   C 0 I 8
s chlSab2.chr4              90514665 65 -  91010382 accatgttggccaggctggtctcgaacccctgaccttcagtgatccatccgcctcagcctcccaa
i chlSab2.chr4             C 0 I 8
s manLeu1.NW_012110441v1       96394 65 -    438239 accgtgttggccaggctggtctcacactcctgacctccagtgatccatccgcctcagcctcctga
i manLeu1.NW_012110441v1   C 0 I 8
s colAng1.NW_012118799v1      137393 65 -    514179 accatgttggccaggctggcctcgaactcctgacctccagtgatccatccgcctcagcctcccaa
i colAng1.NW_012118799v1   C 0 I 8
s calJac3.chr2             203789197 65 + 204313951 accctgttgctcgggctggtcttgaactcctgacctaaagtgatccatctgccttgacctcccaa
i calJac3.chr2             I 30 I 8
s saiBol1.JH378155          15949100 65 +  16417988 accatgttggttgggctggtctcgaactccttacctaaagtgatctatctgccttgacctcccaa
i saiBol1.JH378155         C 0 I 8
s aotNan1.NW_018503740v1    25345577 65 -  25620257 accatgttggtcgggctggtctcgacctcctgacctaaagtgatccatctgccttgaccttccaa
i aotNan1.NW_018503740v1   I 406 I 8
e otoGar3.GL873745           1838977  3 -   2165740 I
e cebCap1.NW_016108158v1       27293 103 +    298490 I
e canFam3.chr34             11680033  0 +  42124431 C

a score=286995.000000
s hg38.chr5_KI270793v1_alt      9473 30 +    126136 gactacaggcatgagccaccacacccaacc
s panTro5.chr5             181275279 30 - 181907262 gactacaggcatgagccaccacacccaacc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996713 30 - 183735486 gactacaggcatgagccaccacacccaacc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87310 30 +    698298 gactacaggcatgagccaccacacccaacc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511561 30 - 121039945 gactacaggcatgagccaccgcgcccaacc
i nomLeu3.chr6             I 8 C 0
s rheMac8.chr6             179464771 30 - 180051392 gactacaggcatgagtcactacacccaacc
i rheMac8.chr6             I 8 C 0
s macFas5.chr6             181195890 30 - 181584905 gactacaggcatgagccactacgcccaacc
i macFas5.chr6             I 8 C 0
s macNem1.NW_012012389v1      190746 30 -   1764207 gactacaggcatgagccactacgcccaacc
i macNem1.NW_012012389v1   I 8 C 0
s cerAty1.NW_012009470v1      205873 30 -  16742782 gactacaggcatgagccactacgcccaacc
i cerAty1.NW_012009470v1   I 8 C 0
s chlSab2.chr4              90514738 30 -  91010382 gactacaggcatgagccactacgcccaacc
i chlSab2.chr4             I 8 C 0
s manLeu1.NW_012110441v1       96467 30 -    438239 gactacagtcatgagccactatgcccaacc
i manLeu1.NW_012110441v1   I 8 C 0
s colAng1.NW_012118799v1      137466 30 -    514179 gactacaggcatgagccactatgccTAACT
i colAng1.NW_012118799v1   I 8 C 0
s calJac3.chr2             203789270 30 + 204313951 gactagaggcgtgagccactgcgcccggcc
i calJac3.chr2             I 8 C 0
s saiBol1.JH378155          15949173 30 +  16417988 gactataggcgtgagccactgcactcggcc
i saiBol1.JH378155         I 8 C 0
s cebCap1.NW_016108158v1       27396 30 +    298490 gactacaggcgtgagccactgtgcccggcc
i cebCap1.NW_016108158v1   I 103 C 0
s aotNan1.NW_018503740v1    25345650 30 -  25620257 gactacaggcgtgagccactgcgcccggcc
i aotNan1.NW_018503740v1   I 8 C 0
e otoGar3.GL873745           1838977  3 -   2165740 I
e canFam3.chr34             11680033  0 +  42124431 C

a score=164053.000000
s hg38.chr5_KI270793v1_alt      9503 16 +    126136 AGAATATGTTCTGATT
s panTro5.chr5             181275309 16 - 181907262 AGAATATGTTCTGATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996743 16 - 183735486 AGAATATGTTCTGATT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87340 16 +    698298 AGAATATGTTCTGATT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511591 16 - 121039945 AGAATATGTTTTGATT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179464801 16 - 180051392 AGAATATGTTCTGATT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195920 16 - 181584905 AGAATATGTTCTGATT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190776 16 -   1764207 AGAATATGTTCTGATT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205903 16 -  16742782 AGAATATGTTCTGATT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514768 16 -  91010382 AGAATATGTTCTGATT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96497 16 -    438239 AGAATATGTTCTGATT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137496 16 -    514179 AGAATATGTTCTGATT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789300 16 + 204313951 AGAATATGTTTTGATT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949203 12 +  16417988 AGAATATG----GTTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       27426 16 +    298490 AGAATATGTTTTGATT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25345680 16 -  25620257 AGAATATGTTTTGATT
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11680033 16 +  42124431 AAAACACATCTCAATT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1838977  3 -   2165740 I

a score=962374.000000
s hg38.chr5_KI270793v1_alt      9519 91 +    126136 AAGTTTAAAATTTGGTTTGAGCTcttccagttccaggcaacatggagaggacacatttcaacctgctcct-cccgcatattagacccactgc
s panTro5.chr5             181275325 91 - 181907262 AAGTTTAAAATTTGGTTTGAGCTcttccagttccaggcaacatggagaggacacatttcaccctgctcct-cccgcatattagacccactgc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996759 91 - 183735486 AAGTTTAAAATTTGGTTTGAGCTcttccagttccaggcaacatggaggggacacatttcaccctgctcct-cccgcatattagacccactgc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87356 91 +    698298 AAGTTTAAAATTTGGTTTGAGCTCTTCCAGTCCCAggcaacatggagaggacacacttcaccctgctcct-cccgcatattagacccactgc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511607 90 - 121039945 AAGTTTAAAATTTGGTTTGAGCTCCTCCAGTTCCAGGCAACATGGAGGGGACACATTTCA-CCTGCTCCT-CCCGCACATTAGACCCACCGC
i nomLeu3.chr6             C 0 M 100
s rheMac8.chr6             179464817 91 - 180051392 AAATTTACAATTTGGTTTGAGCTCctccagttccaggcaagatggaggggacacatttcaccctgctcct-ctcgcatatcagacccaccgc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181195936 91 - 181584905 AAATTTACAATTTGGTTTGAGCTCctccagttccaggcaagatggaggggacacatttcaccctgctcct-ctcgcatatcagacccaccgc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190792 91 -   1764207 AAATTTACAATTTGGTTTGAGCTCctccagttccaggcaagatggaggggacacatttcaccctgctcct-ctcgcatatcagacccaccgc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      205919 91 -  16742782 AAATTTACAATTTGGTTTGAGCTCctccagttccaggcaagatggaggggacacatttcaccctgctcct-ctcgcatatcagacccaccgc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514784 91 -  91010382 AAGTTTACAATTTGGTTTGAGCTcttccaattccaggcaagatggaggggacacatttcaccctgttcct-cccgcatattagacccaccgc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96513 91 -    438239 AAATTTACAATTTGGTTTGAGCTCctccagttccaggcaagatggaggggacacatttcaccctgctcct-ctcgcatatcagacccaccgc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137512 91 -    514179 AAGTTTACAATTTGGTTTGAGCTcttccagttccaggcaagatggaggggacgcatttcatcctgctcct-cctgcatattagacccaccgc
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789316 91 + 204313951 AAGTTTAAAATTGGGTTGGAGCTcttccaattccaggcaagatggaggagatatatcccaccctactcct-ctcacatattagacccaccac
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949215 91 +  16417988 AAGTTTAAATTTGGGTTGGAGCTCTCCCAgttccaggcaagatggaggagatacatttcactctactcct-cccacatattagacccaccac
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       27442 91 +    298490 AAGTTTAAAATTGGGTTGGAGCTcttccaattccaggcaagatggaggagatacatttcaccctactcgt-cccacgtattagacccaccac
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25345696 91 -  25620257 AAGTTCAAAATTGGGTTGGAGCTcttccgattccaggcaagatggaggagatacatttcatcctactcct-cccacatattagacccaccac
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1838980 77 -   2165740 AAGTTTAAAAGTTGGTCCAAGCACCTCTAGTTCCAGACAAG-----GCAGACATATGTCA-CCTGCTCCT-CTTC--------ACTTACCGC
i otoGar3.GL873745         I 3 I 9
s canFam3.chr34             11680049 91 +  42124431 TAATTTAAAACT-GGTCTGTGGGCCTCCATTTCCAgaaaagacagaataaacccatttcaccctattcctactcacatattatgactaactc
i canFam3.chr34            C 0 C 0

a score=333181.000000
s hg38.chr5_KI270793v1_alt      9610 38 +    126136 cctggaggaaaatatacggaacaagcattgggggactg--
s panTro5.chr5             181275416 38 - 181907262 cctggaggaaaatatatggaacaagcattgggggactg--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996850 38 - 183735486 cctggaggaaaatatatggaacaagcattgggggactg--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87447 38 +    698298 cctggaggaaaatatatggaacaagcattgggggactg--
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179464908 38 - 180051392 cctggaggaaaatatatggaacaagcactggcggactg--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196027 38 - 181584905 cctggaggaaaatatatggaacaagcactggcggactg--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190883 38 -   1764207 cctggaggaaaatatatggaacaagcactggcggactg--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206010 38 -  16742782 cctggaggaaaatatatggaacaagcactggtggactg--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514875 38 -  91010382 cctggaggaaaacatatagaacaagcactgggggactg--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96604 38 -    438239 cctggaggaaaatatatggaacaagcactggcggactg--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137603 38 -    514179 cctggaggaaaatatatggaacaagcattgggggactg--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789407 38 + 204313951 cctgcaggaaaatatacaaaacaagcactggaagactg--
i calJac3.chr2             C 0 I 4
s saiBol1.JH378155          15949306 38 +  16417988 cctggaggaaaatatacaaaacaggcattgggaggccg--
i saiBol1.JH378155         C 0 I 4
s cebCap1.NW_016108158v1       27533 38 +    298490 cctggaggaaaatgcacaaaacaagcattgggagaccg--
i cebCap1.NW_016108158v1   C 0 I 4
s aotNan1.NW_018503740v1    25345787 38 -  25620257 cctggaggaaagtatacaaaacaagcatcgggagactg--
i aotNan1.NW_018503740v1   C 0 I 4
s otoGar3.GL873745           1839066 35 -   2165740 CCAGGAGGCAAG-GCACGGAA-GGGCAATGG-GCACGG--
i otoGar3.GL873745         I 9 I 6
s canFam3.chr34             11680140 40 +  42124431 cctggacaacaatgtataaaccaagcaccagacaactctg
i canFam3.chr34            C 0 C 0
e nomLeu3.chr6             120511697 100 - 121039945 M

a score=1684852.000000
s hg38.chr5_KI270793v1_alt      9648 189 +    126136 ----aaaggaacaga-agccaaccagccaggggcctcggcactcgagagagaacccagcgctgagtccctggcttgactctggggttttgtttatgcttatttactacacatcccactctgggtgccacagaagtcggcagcccagaaacacaa-----aaagaccaaa------aacc---gtaagcctgctctcgatggccaaagg
s panTro5.chr5             181275454 175 - 181907262 ----aaaggaacaga-agccaaccagccaagggcctcggcactcgagagagaacccagcgctgagtccctggcttgactctggggttttgtttatgcttatttactacacatgccactccaggtgccacagaagtcggcagcccagaaacacaa-----aaagaccaaa------aacc---g--------------acggccaaagg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182996888 175 - 183735486 ----aaaggaacaga-agccaaccagccaggggcctcggcactcgagagagaacccagcgctgagtccctggcttgactctggggttttgtttatgcttatttactacacatcccactccgggtgccacagaagtcggcagcccagaaacacaa-----aaagaccaaa------aacc---g--------------acggccaaagg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87485 189 +    698298 ----aaaggaacaga-agccaaccagccaggggcctcggcactcgagagagaacccagcgctgagtccctggcttgactctggggttttgtttatgcttatttactacacatcccactctgggtgccacagaagtcggcagcccagaaacacaa-----aaagaccaaa------aacc---gtaagcctgctctcgatggccaaagg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511799 189 - 121039945 ----AAAGgaacaga-agccaaccagccaggggcctcggcactcgagagagaacccagcgctgagtccctggcttgactctggggttttgtttctgcttatctactacacatcccactccgggtgctacagaagccagcagcccagaaacaccg-----aaagaccaaa------aacc---gtaagcctgctctcgacggccaaagg
i nomLeu3.chr6             M 100 C 0
s rheMac8.chr6             179464946 189 - 180051392 ----caatgaacaga-agccaaccggccacgggcctcggcactcgagaggtaacccagcactgaggccctgggttgactctggggttttgtttatgtttgtttactacacatcccactccgggtgccacaaaagctggcagcccagaaacacca-----aaagaccaaa------aacc---gtaagcctgctctcgatggccaaagg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196065 189 - 181584905 ----caatgaaccga-agccaaccggccatgggcctcggcactcgagaggtaacccagcactgaggccctgggttgactctggggttttgtttatgtttgtttactacacatcccactctgggtgccacaaaagctggcagcccagaaacacca-----aaagaccaaa------aacc---gtaagcctgctctcgatggccaaagg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      190921 189 -   1764207 ----caatgaacaga-agccaaccggccacgggcctcggcactggagaggtaacccagcactgaggccctgggttgactctggggttttgtttatgtttgtttactacacatcccactccgggtgccacaaaagctggcagcccagaaacaccc-----aaagaccaaa------aacc---gtaagcctgctctcgatggccaaagg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206048 189 -  16742782 ----caatgaacaga-agccaaccggccacgggcctcggcactcgagaggtaacccagcactgaggccctgggttgactctggggttttgtttatgtttgtttactacacatcccactccgggtgccacagaagctggcagcccagaaacacca-----aaagaccaaa------aacc---gtaagcctgctctcgacggccaaagg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90514913 189 -  91010382 ----caatgaacaga-agccaaccggccaggggccttggcactcgagaggtaacccagcactgaggccctgggtcgactctggggttttgtttatgcttgtttactacacatcccactccgggtgccacagaagctagcagcccagaaacacca-----aaagaccaaa------aacc---gtaagcctgctctcgatggccaaagg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96642 185 -    438239 ----caatgaacaga-agccaaccggccacgggcctcggcactcgagaggtaacccagcactgaggccctgggttgactctggggttttgtttatgtttgtttactacacatcccactccgggtgccacagaagctggcagcccagaaacacca-----aaagaccaaa------aacc---gtaa----gctctccatagccaaagg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137641 189 -    514179 ----caatgaacaga-agccaaccggccaggggcctcggcactcgagaggtaacccagcactgaggccctgggttgactctggcgttttgtttatgcttgtttactacacatcccacgccgggtgccacagaagctggcagcccagaaagacca-----aaagaccaaa------aacc---gtaagcctgctctcgatggccaaagg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789449 190 + 204313951 ----gtgggaagagatggccaaccagccagggacctcagcactcgagaaataacccagcactgagtccctgggttggctctggggttttgttcatgctggtctactacacatcccactctggctgccacacaagctagcatcccagatacacca-----acggaccaaa------aacc---ctcagcctgccctcgatggtcagagg
i calJac3.chr2             I 4 C 0
s saiBol1.JH378155          15949348 162 +  16417988 ----gtgggaacagaaggccagccagccaggggcctcggcactcgagaaataacccagcactgagtccctggattggctctggggttttgt----------------------------tgggtgccacacaggctagcatcccggacacacca-----atgggccaaa------aacc---ctcagcctgctctccatggtcaaagg
i saiBol1.JH378155         I 4 C 0
s cebCap1.NW_016108158v1       27575 162 +    298490 ----gtgggaacagatggccaacc----------------------------acccagcactgagtccctgggttggctctggggttttgtttatgctggcctactacacgtcccactctgggtgccacacaagctagcatcccagacacacca-----atggaccaaa------aacc---ctcagcctgctcttaatggtcaaagg
i cebCap1.NW_016108158v1   I 4 C 0
s aotNan1.NW_018503740v1    25345829 189 -  25620257 ----gtgggaacagacggccaaccggccagggacctcggcactcgagaaataacccagcactgagtccctgggttggctccggggttttgtttatgccggtctactacacgtcccactccgggtgccacatgagcgagcaccccagacacacca-----atggacc-aa------agcc---ctcagcctgctctccatggtcaaagg
i aotNan1.NW_018503740v1   I 4 C 0
s otoGar3.GL873745           1839107 166 -   2165740 ----caggagccaaa-ggtcagctgtttggggacctcag-actcaagaaataacctagcagtaagctcc----------ccaggg--------------gtctacagtacaacc--ctctgagtgccaaaggagctggcaacccagaaacaccaatgacatagatcaaa------aaatcaggtaagcctgcttttc----tcagagg
i otoGar3.GL873745         I 6 C 0
s canFam3.chr34             11680180 187 +  42124431 aagtgtgtggaacgg-gtcca--catttagggacctcaa-----gaaatgtcacgcagtg--agggccctgcattggtctcagggctgtctgtttg---gtcttctatacatcccaatccaagtgccaaagaagctagcaacccagaaccatca-----atggactctaacatgtaagg---gtaagcctgtggtccagggtagaagg
i canFam3.chr34            C 0 C 0

a score=92494.000000
s hg38.chr5_KI270793v1_alt      9837 11 +    126136 accagga--gggg
s panTro5.chr5             181275629 11 - 181907262 accagga--gggg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997063 11 - 183735486 accagga--gggg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87674 11 +    698298 accagga--gggg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511988 11 - 121039945 cccagga--gggg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465135 11 - 180051392 accagga--gggg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196254 11 - 181584905 accagga--gggg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191110 11 -   1764207 accagga--gggg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206237 11 -  16742782 accagga--gggg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515102 11 -  91010382 accagga--gggg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96827 11 -    438239 accagga--gggg
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203789639 11 + 204313951 accagga--gggg
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949510 13 +  16417988 acgaagGTCAAAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       27737 11 +    298490 accagga--gggg
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25346018 11 -  25620257 accagga--gggg
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1839273  4 -   2165740 acca---------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11680367 11 +  42124431 accagga--tggg
i canFam3.chr34            C 0 C 0
e colAng1.NW_012118799v1      137830  0 -    514179 C

a score=6046.000000
s hg38.chr5_KI270793v1_alt      9848 4 +    126136 cct-g
s panTro5.chr5             181275640 4 - 181907262 cct-g
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997074 4 - 183735486 cct-g
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87685 4 +    698298 cct-g
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120511999 4 - 121039945 cct-g
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465146 4 - 180051392 cct-g
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196265 4 - 181584905 cct-g
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191121 4 -   1764207 cct-g
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206248 4 -  16742782 cct-g
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515113 4 -  91010382 cct-g
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96838 4 -    438239 cct-g
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203789650 3 + 204313951 cCT--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949523 3 +  16417988 CCT--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       27748 4 +    298490 cCTT-
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25346029 4 -  25620257 cCTT-
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1839277 0 -   2165740 C
e canFam3.chr34             11680378 0 +  42124431 C
e colAng1.NW_012118799v1      137830 0 -    514179 C

a score=10311.000000
s hg38.chr5_KI270793v1_alt      9852 5 +    126136 gcagg
s panTro5.chr5             181275644 5 - 181907262 gcagg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997078 5 - 183735486 gcagg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87689 5 +    698298 gcagg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512003 5 - 121039945 gcagg
i nomLeu3.chr6             C 0 C 0
s cebCap1.NW_016108158v1       27752 5 +    298490 GCAGG
i cebCap1.NW_016108158v1   C 0 I 14
s aotNan1.NW_018503740v1    25346033 5 -  25620257 GCAGG
i aotNan1.NW_018503740v1   C 0 I 9
e otoGar3.GL873745           1839277 0 -   2165740 C
e saiBol1.JH378155          15949526 0 +  16417988 C
e calJac3.chr2             203789653 0 + 204313951 C
e canFam3.chr34             11680378 0 +  42124431 C
e manLeu1.NW_012110441v1       96842 0 -    438239 C
e chlSab2.chr4              90515117 0 -  91010382 C
e cerAty1.NW_012009470v1      206252 0 -  16742782 C
e colAng1.NW_012118799v1      137830 0 -    514179 C
e macNem1.NW_012012389v1      191125 0 -   1764207 C
e macFas5.chr6             181196269 0 - 181584905 C
e rheMac8.chr6             179465150 0 - 180051392 C

a score=20731.000000
s hg38.chr5_KI270793v1_alt      9857 19 +    126136 acagactctctgtacatca
s panTro5.chr5             181275649 19 - 181907262 acagactctctgtacatca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997083 19 - 183735486 acagactctctgtacatca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87694 19 +    698298 acagactctctgtacatca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512008 19 - 121039945 acagactgtctgcacatca
i nomLeu3.chr6             C 0 I 1
s otoGar3.GL873745           1839277 17 -   2165740 --aaaCTCTTTTGACATCA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25346038  9 -  25620257 I
e cebCap1.NW_016108158v1       27757 14 +    298490 I
e saiBol1.JH378155          15949526  0 +  16417988 C
e calJac3.chr2             203789653  0 + 204313951 C
e canFam3.chr34             11680378  0 +  42124431 C
e manLeu1.NW_012110441v1       96842  0 -    438239 C
e chlSab2.chr4              90515117  0 -  91010382 C
e cerAty1.NW_012009470v1      206252  0 -  16742782 C
e colAng1.NW_012118799v1      137830  0 -    514179 C
e macNem1.NW_012012389v1      191125  0 -   1764207 C
e macFas5.chr6             181196269  0 - 181584905 C
e rheMac8.chr6             179465150  0 - 180051392 C

a score=1365.000000
s hg38.chr5_KI270793v1_alt      9876 1 +    126136 t
s panTro5.chr5             181275668 1 - 181907262 t
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997102 1 - 183735486 t
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87713 1 +    698298 t
i gorGor5.CYUI01015805v1   C 0 C 0
s saiBol1.JH378155          15949526 1 +  16417988 T
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1839294 1 -   2165740 T
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25346038 9 -  25620257 I
e cebCap1.NW_016108158v1       27757 14 +    298490 I
e calJac3.chr2             203789653 0 + 204313951 C
e canFam3.chr34             11680378 0 +  42124431 C
e nomLeu3.chr6             120512027 1 - 121039945 I
e manLeu1.NW_012110441v1       96842 0 -    438239 C
e chlSab2.chr4              90515117 0 -  91010382 C
e cerAty1.NW_012009470v1      206252 0 -  16742782 C
e colAng1.NW_012118799v1      137830 0 -    514179 C
e macNem1.NW_012012389v1      191125 0 -   1764207 C
e macFas5.chr6             181196269 0 - 181584905 C
e rheMac8.chr6             179465150 0 - 180051392 C

a score=25484.000000
s hg38.chr5_KI270793v1_alt      9877 24 +    126136 cagccctcctgcaaccacacacAC
s panTro5.chr5             181275669 24 - 181907262 cagccctcctgcaaccacacacAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997103 24 - 183735486 cagccctcctgcaaccacacacAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87714 24 +    698298 cagccctcctgcaaccacacacAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512028 24 - 121039945 cagccctcctgcaaccacacacAC
i nomLeu3.chr6             I 1 C 0
s calJac3.chr2             203789653  8 + 204313951 ---------------CATAGGC-C
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949527 11 +  16417988 -----------CA--CATAGGCTC
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1839295 24 -   2165740 CAGCCCTACTCCAACCACACACAC
i otoGar3.GL873745         C 0 I 19
e aotNan1.NW_018503740v1    25346038  9 -  25620257 I
e cebCap1.NW_016108158v1       27757 14 +    298490 I
e canFam3.chr34             11680378  0 +  42124431 C
e manLeu1.NW_012110441v1       96842  0 -    438239 C
e chlSab2.chr4              90515117  0 -  91010382 C
e cerAty1.NW_012009470v1      206252  0 -  16742782 C
e colAng1.NW_012118799v1      137830  0 -    514179 C
e macNem1.NW_012012389v1      191125  0 -   1764207 C
e macFas5.chr6             181196269  0 - 181584905 C
e rheMac8.chr6             179465150  0 - 180051392 C

a score=93989.000000
s hg38.chr5_KI270793v1_alt      9901  90 +    126136 TGTTCACATCATCAGCCCT--------CCTGCAAGcaaacccccaccca------cacacacaaca----------------acacatacacacac---------gcacacac-CCCTCGTCCACTTGGC
s panTro5.chr5             181275693  88 - 181907262 TGTTCACATCATCAGCCCT--------CCTGCAAGcaaacccccaccca------cacacacaac------------------cacacacacacac---------acacacCC-CCCTCGTCCACTTGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997127 106 - 183735486 TGTTCACATCATCAGCCATCAGCCCTCCCTGCAAGCAAACCCCCACCC-------cacacacaaca----------------acacacacacacacacacacacgacacacac-CCCTCGTCCACTTGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87738  95 +    698298 TGTTCACGTCATCAGCCCT--------CCTGCAAGCAAACCCCCACCca------cacacacaaca-----------catacacacacacacacac---------acacacac-CCCTTGTCCACTTGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512052 113 - 121039945 TGTTCACATCATCAGTCCT--------CCTGCAAGCAAACCCCCACCCACCCACCcacacacaaccacacacccacccacaaccacacacacacac---------acacacacacCCTCGTCCACCTGGC
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203789661  74 + 204313951 CCTTCACATCATCAGTCCT--------ACTGTGACCAAAC-------ca------cacac----------------------acacacacacacac---------acacacac-acCTCGTCCACCT---
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949538  72 +  16417988 TCTTCACATCATCAGCCCT--------ACTGCGACCAAAC---------------CACAC----------------------ACCCACACCCACAC---------CCACACAC-ACCTCGTCCACCT---
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25346038   9 -  25620257 I
e otoGar3.GL873745           1839319  19 -   2165740 I
e cebCap1.NW_016108158v1       27757  14 +    298490 I
e canFam3.chr34             11680378   0 +  42124431 C
e manLeu1.NW_012110441v1       96842   0 -    438239 C
e chlSab2.chr4              90515117   0 -  91010382 C
e cerAty1.NW_012009470v1      206252   0 -  16742782 C
e colAng1.NW_012118799v1      137830   0 -    514179 C
e macNem1.NW_012012389v1      191125   0 -   1764207 C
e macFas5.chr6             181196269   0 - 181584905 C
e rheMac8.chr6             179465150   0 - 180051392 C

a score=13095.000000
s hg38.chr5_KI270793v1_alt      9991 9 +    126136 ACCAGGAGG
s panTro5.chr5             181275781 9 - 181907262 ACCAGGAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997233 9 - 183735486 ACCAGGAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87833 9 +    698298 ACCAGGAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512165 9 - 121039945 ACCAGGAGG
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      137830 9 -    514179 accaggagg
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25346038 9 -  25620257 I
e otoGar3.GL873745           1839319 19 -   2165740 I
e cebCap1.NW_016108158v1       27757 14 +    298490 I
e saiBol1.JH378155          15949610 0 +  16417988 C
e calJac3.chr2             203789735 0 + 204313951 C
e canFam3.chr34             11680378 0 +  42124431 C
e manLeu1.NW_012110441v1       96842 0 -    438239 C
e chlSab2.chr4              90515117 0 -  91010382 C
e cerAty1.NW_012009470v1      206252 0 -  16742782 C
e macNem1.NW_012012389v1      191125 0 -   1764207 C
e macFas5.chr6             181196269 0 - 181584905 C
e rheMac8.chr6             179465150 0 - 180051392 C

a score=19152.000000
s hg38.chr5_KI270793v1_alt     10000 6 +    126136 GGCCTT
s panTro5.chr5             181275790 6 - 181907262 GGCCTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997242 6 - 183735486 GGCCTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87842 6 +    698298 GGCCTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512174 6 - 121039945 GGCCTT
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      137839 6 -    514179 ggcctt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789735 6 + 204313951 GGCCTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949610 6 +  16417988 GGCCTT
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11680378 6 +  42124431 ggGCTT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25346038 9 -  25620257 I
e otoGar3.GL873745           1839319 19 -   2165740 I
e cebCap1.NW_016108158v1       27757 14 +    298490 I
e manLeu1.NW_012110441v1       96842 0 -    438239 C
e chlSab2.chr4              90515117 0 -  91010382 C
e cerAty1.NW_012009470v1      206252 0 -  16742782 C
e macNem1.NW_012012389v1      191125 0 -   1764207 C
e macFas5.chr6             181196269 0 - 181584905 C
e rheMac8.chr6             179465150 0 - 180051392 C

a score=34728.000000
s hg38.chr5_KI270793v1_alt     10006 5 +    126136 GCAGG
s panTro5.chr5             181275796 5 - 181907262 GCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997248 5 - 183735486 GCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87848 5 +    698298 GCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512180 5 - 121039945 GCAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465150 5 - 180051392 gcagg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196269 5 - 181584905 gcagg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191125 5 -   1764207 gcagg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206252 5 -  16742782 gcagg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515117 5 -  91010382 gcagg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96842 5 -    438239 gcagg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137845 5 -    514179 gcagg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789741 1 + 204313951 ----G
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949616 1 +  16417988 ----G
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11680384 5 +  42124431 GCAGC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25346038 9 -  25620257 I
e otoGar3.GL873745           1839319 19 -   2165740 I
e cebCap1.NW_016108158v1       27757 14 +    298490 I

a score=31388.000000
s hg38.chr5_KI270793v1_alt     10011 5 +    126136 ACAGA
s panTro5.chr5             181275801 5 - 181907262 ACAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997253 5 - 183735486 ACAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87853 5 +    698298 ACAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512185 5 - 121039945 ATGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465155 5 - 180051392 acaga
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196274 5 - 181584905 acaga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191130 5 -   1764207 acaga
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206257 5 -  16742782 acaga
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515122 5 -  91010382 acaga
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96847 5 -    438239 acaga
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137850 5 -    514179 ccaga
i colAng1.NW_012118799v1   C 0 C 0
s aotNan1.NW_018503740v1    25346047 5 -  25620257 ACAGG
i aotNan1.NW_018503740v1   I 9 C 0
s canFam3.chr34             11680389 5 +  42124431 ACATG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1839319 19 -   2165740 I
e cebCap1.NW_016108158v1       27757 14 +    298490 I
e saiBol1.JH378155          15949617 0 +  16417988 C
e calJac3.chr2             203789742 0 + 204313951 C

a score=38096.000000
s hg38.chr5_KI270793v1_alt     10016 5 +    126136 CTCTC
s panTro5.chr5             181275806 5 - 181907262 CTCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997258 5 - 183735486 CTCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87858 5 +    698298 CTCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512190 5 - 121039945 CTCTC
i nomLeu3.chr6             C 0 I 140
s rheMac8.chr6             179465160 5 - 180051392 gtctc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196279 5 - 181584905 gtctc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191135 5 -   1764207 gtctc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206262 5 -  16742782 ctctc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515127 5 -  91010382 gtctc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96852 5 -    438239 ctctc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137855 5 -    514179 ctctc
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       27771 5 +    298490 CTCTC
i cebCap1.NW_016108158v1   I 14 C 0
s aotNan1.NW_018503740v1    25346052 5 -  25620257 CTCTC
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11680394 3 +  42124431 --CTC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1839319 19 -   2165740 I
e saiBol1.JH378155          15949617 0 +  16417988 C
e calJac3.chr2             203789742 0 + 204313951 C

a score=161732.000000
s hg38.chr5_KI270793v1_alt     10021 17 +    126136 TTCACATCATCAGCCCT
s panTro5.chr5             181275811 17 - 181907262 TTCATATCATCAGCCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997263 17 - 183735486 TTCATATCATCAGCCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87863 17 +    698298 TTCACATCATCAGCCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512335 17 - 121039945 TTCACATCATCAGCCCT
i nomLeu3.chr6             I 140 C 0
s rheMac8.chr6             179465165 17 - 180051392 ttcacatcaccagccct
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196284 17 - 181584905 ttcacatcaccagccct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191140 17 -   1764207 ttcacatcaccagccct
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206267 17 -  16742782 ttcacatcaccagccct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515132 17 -  91010382 ttcacatcaccagccct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96857 17 -    438239 ttcacatcaccagccct
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137860 17 -    514179 ttcacatcaccagccct
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789742 14 + 204313951 TTCA---CATCAGCCCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949617 14 +  16417988 TTCA---CATCAGCCCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       27776 17 +    298490 TTCACATCATCAGCCCT
i cebCap1.NW_016108158v1   C 0 I 542
s aotNan1.NW_018503740v1    25346057 17 -  25620257 TTCACATCATCAGCCCT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1839319 19 -   2165740 I
e canFam3.chr34             11680397  0 +  42124431 C

a score=42220.000000
s hg38.chr5_KI270793v1_alt     10038 5 +    126136 CCTGC
s panTro5.chr5             181275828 5 - 181907262 CCTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997280 5 - 183735486 CCTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87880 5 +    698298 CCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512352 5 - 121039945 CCTGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465182 5 - 180051392 cctgc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196301 5 - 181584905 cctgc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191157 5 -   1764207 cctgc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206284 5 -  16742782 cctgc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515149 5 -  91010382 cctgc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96874 5 -    438239 cctgc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137877 5 -    514179 cctgc
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789756 5 + 204313951 GCTGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949631 5 +  16417988 ACTGT
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25346074 5 -  25620257 ACTGC
i aotNan1.NW_018503740v1   C 0 I 116
s canFam3.chr34             11680397 4 +  42124431 -CTGA
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1839319 19 -   2165740 I
e cebCap1.NW_016108158v1       27793 542 +    298490 I

a score=54830.000000
s hg38.chr5_KI270793v1_alt     10043  47 +    126136 AAGCAAACCC---------------------------CCA--------------------------------------CTCGCGCGcacacac----acacacaca------tacacacaca
s panTro5.chr5             181275833  37 - 181907262 AAGCAAACCC---------------------------CCA--------------------------------------CTCGCGcacacacac----acacacaca----------------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997285  45 - 183735486 AAGcaaaccc---------------------------cca--------------------------------------ctcgcgcgcacacac----acacacaat--------cacacaca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87885  45 +    698298 AAGcaaaccc---------------------------cca--------------------------------------ctcgcacacacacac----acaatcaca--------cacacaca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512357  37 - 121039945 AAGCAAACCC---------------------------CCA--------------------------------------CTTGcacacacacac----acacacaca----------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465187  35 - 180051392 aagcaaacc---------------------------------------------------------------------------cacacacac----atacacaac--------cacacaca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196306  35 - 181584905 aagcaaacc---------------------------------------------------------------------------cacacacac----atacacaac--------cacacaca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191162  35 -   1764207 aagcaaacc---------------------------------------------------------------------------cacacacac----atacacaac--------cacacaca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206289  27 -  16742782 aagtaaacc---------------------------------------------------------------------------cacacacac----atacacaac----------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515154  43 -  91010382 aagcaaacC---------------------------------------------------------------------------cacacacac----atacacaaccacacacacacacaca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96879  35 -    438239 aagcaaacc---------------------------------------------------------------------------cacacacac----atacacaac--------cacacaca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137882  35 -    514179 aagcaaacc---------------------------------------------------------------------------cacacacac----atacacaac--------cacacaca
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789761 108 + 204313951 GACCAAACCA------CACACCCACCCCCTATTGCAACCAAACCATACACACACACACACACCTCGTCCATGTGACAAACcacacacacacacacacacacacacC--------CTCCTGCA
i calJac3.chr2             C 0 I 27
s saiBol1.JH378155          15949636  77 +  16417988 GACCAAACCATACACCCACATCCACCCCCTATTGCAACTA---------------------------------GCCACCCCCCCGACACACAC----ACACACAAC--------CTACTGCA
i saiBol1.JH378155         C 0 I 18
s canFam3.chr34             11680401  20 +  42124431 ------------------------------------------------------------------------------------CAC-CAGCC----CCACACTAG--------CTC-----
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25346079 116 -  25620257 I
e otoGar3.GL873745           1839319  19 -   2165740 I
e cebCap1.NW_016108158v1       27793 542 +    298490 I

a score=20410.000000
s hg38.chr5_KI270793v1_alt     10090 3 +    126136 cac
s panPan2.chr5             182997330 3 - 183735486 cat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87930 3 +    698298 tac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512394 3 - 121039945 cac
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465222 3 - 180051392 cac
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196341 3 - 181584905 cac
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191197 3 -   1764207 cac
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206316 3 -  16742782 ccc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515197 3 -  91010382 cac
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96914 3 -    438239 cac
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137917 3 -    514179 cac
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789896 3 + 204313951 CAC
i calJac3.chr2             I 27 C 0
s saiBol1.JH378155          15949731 3 +  16417988 CAC
i saiBol1.JH378155         I 18 C 0
s aotNan1.NW_018503740v1    25346195 3 -  25620257 CAC
i aotNan1.NW_018503740v1   I 116 C 0
e panTro5.chr5             181275870 0 - 181907262 C
e otoGar3.GL873745           1839319 19 -   2165740 I
e cebCap1.NW_016108158v1       27793 542 +    298490 I
e canFam3.chr34             11680421 0 +  42124431 C

a score=136497.000000
s hg38.chr5_KI270793v1_alt     10093 16 +    126136 acacacacCCCTCGTC
s panTro5.chr5             181275870 15 - 181907262 -cacacacCCCTCGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997333 16 - 183735486 acacacacCCCTCGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87933 16 +    698298 acacacCCCCCTCATC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512397 16 - 121039945 acaAATGCCCCTCGTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465225 16 - 180051392 acaaacacCCCTCGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196344 16 - 181584905 acaaacacCCCTCGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191200 16 -   1764207 acaaacacCCCTTGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206319 16 -  16742782 acaaacacccCTCGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515200 16 -  91010382 acacacacCCCTCGTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96917 16 -    438239 acaaacacCCCTCGTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137920 16 -    514179 acaaacacCCCTCGTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789899 16 + 204313951 ACATACACCCTTCATC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949734 16 +  16417988 ACATACACCCTTCATC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       28335 16 +    298490 ACATACACCCTTCATC
i cebCap1.NW_016108158v1   I 542 C 0
s aotNan1.NW_018503740v1    25346198 16 -  25620257 ACGCACCCCCTTCATC
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11680421  9 +  42124431 -CATACACCT------
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1839319 19 -   2165740 I

a score=4049000.000000
s hg38.chr5_KI270793v1_alt     10109 411 +    126136 CACCTGGCCTTGCGCAGCAGCCAGCACCGGGG-TGTGAGAATGGATCCTGACTGCTGTCCCGGCCTGGCTAGAACGAGGTGGTGCCCTTCACTCTCCCAGCCAGTA-GGGTCTGCCAGAGGCCGTGGGTGAGGCAGGAGCTCCATGACTGTCCCGGCAACAAGGTGGCACCCAGCAGGCTCGAGTGAGGAgtcttctcaagtaaggggatttaaacaggaagcagagtctcatgacatcatacccagcatgtccacaatatgat---aaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaacacagtcaatcaacagataccaccaaga-gagaacacagaacttag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaatgagcaattacaaac
s panTro5.chr5             181275885 411 - 181907262 CACCTGGCCTTGCACAGCAGCCAGCACCGGGG-TGTGAGAATGGATCCTGACTGCTGTCCCGGTCTGGCTAGAACGAGGTGGTGCCCTTCACCCTCCCAGCCAGTA-GGGTCTGCCAGAGGCCGTGGGTGAGGCAGGAGCTCCACGACTGTCCCGGCAACAAGGTGGCACCCAGCAGGCTCGAGTGAGGAgtcttctcaagtaaggggatttaaacaggaagcagagtctcatgacatcatacccagcatgtccacaatatgat---aaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaacacagtcaatcaacagataccaccaaga-gagaacacagaagttag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaatgagcaattacgaac
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997349 411 - 183735486 CACCTGGCCTTGCGCAGCAGCCAGCACCGGGG-TGTGAGAATGGATCCTGACTGCTGTCCCGGCCTGGCTAGAACGAGGTGGTGCCCTTCACCCTCCCAGTGAGTA-GGGTCTGCCAGAGGCCGTGGGTGAGGCAGGAGCTCCACGACTGTCCCGGCAACAAGGTGGCACCCAGCAGGCTCGAGTGAGGAgtcttctcaagtaaggggatttaaacaggaagcagagtctcatgacatcatacccagcatgtccacaatatgat---aaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaacacagtcaatcaacagataccaccaaga-gagaacacagaacttag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaatgagcaattacaaac
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       87949 411 +    698298 CACCTGGCCTTGCGCAGCAGCCAGCACCGGGG-TGTGAGAATGGATCCTGACTGCTGTCCCAGCCTGGGTAGAACAAGGTGGTGCCCTTCACCCTCCCAGCCAGTA-GGGTCTGCCAGAGGCCGTGGGTGAGGCAGGAGCTCCACAACTGTCCCGGCAACAAGGTGGCACCCAGCAGGCTCAAGTGAGGAgtcttctcaagtaaggggatttaaacaggaagcagagtctcatggcatcatacccagcatgtccacaacatgat---aaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaacacagtcaatcaacagataccaccaaga-gagaacacagaacttag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaatgagcaattacaaac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512413 411 - 121039945 CACCTGGCCTTGTGCAGCAGCCAGCACTGGGG-TGTGAGAATGGATCCTGACTGCTGTCCTGGCCTGGCTAGAACGAGGTGGTGCCCTTCACCCTCCCAGCCAGTA-GGGTCTGCCAGAGGCCGTGGGTGAGACAGGCGCTCCACAACTGTCCCGGCAACAAGGTGGCACCCAGCAGGCTCGAGTGAGGAgtcttctcaagtaagaggatttaaacaggaagcagagtctcatgacatcatacccagcatgtccacaatacgat---aaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaacacagtcaaacaacaaataccaccaaga-gagaacacagaagtcag----gtctaacaaggattttaaagtgactgtcataaaaaatgcttcaatgaaaaattacaaac
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465241 410 - 180051392 CACCTGGCTTTGCGTAGCAGCCAGCACTGGGG-TGTGAGAATGGATCCTGACTGCTGTCCCGG-CTGGCTAGAACGAGGTGGTGCCCTTCACGCTCCCAGCCAGTA-GGGTCTGCCAGAGCCTGTGGGTGAGGCAGGAGCCCCACGACTGTCCCGGCAATGAGGCTGCACCCAGCAGGCTTGAGTGAGGAATcttctcaagtaatgggatttaaacaggaagcagagcctcatgacatcatacccagcatgtccacaatacgat---aaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaacacagtcaatcaacagataccaccaaca-gagaacacagaattcag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaaagagcaattacaaac
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196360 410 - 181584905 CACCTGGCTTTGTGTAGCAGCCAGCACTGGGG-TGTGAGAATGGATCCTGACTGCTGTCCCGG-CTGGCTAGAACGAGGTGGTGCCCTTCACCCTCCCAGCCAGTA-GGGTCTGCCAGAGCCTGTGGGTGAGGCAGGAGCCCCACGACTGTCCCGGCAATGAGGCTGCACCCAGCAGGCTTGAGTGAGGAATcttctcaagtaatgggatttaaacaggaagcagagcctcatgacatcatacccagcatgtccacaatacgat---aaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaacacagtcaatcaacagataccaccaaca-gagaacacagaattcag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaaagagcaattacaaac
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191216 411 -   1764207 CACCTGGCTTTGCGTAGCAGCCAGCACTGGGG-TGTGAGAATGGATCCTGACTGCTGTCCCGG-CTGGCTAGAACGAGGTGGTGCCCTTCACCCTCCCAGCCAGTA-GGGTCTGCCAGAGCCTGTGGGTGAGGCAGGAGCCCCACGACTGTCCCGGCAATGAGGCTGCACCCAGCAGGCTTGAGTGAGGAATcttctcaagtaatgggatttaaacaggaagcagagcctcatgacatcatacccagcatgtccacaatacgata--aaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaacacagtcaatcaatagataccaccaaca-gagaacacagaattcag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaaagagcaattacaaac
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206335 410 -  16742782 CACCTGGCCTTGCGTAGCAGCCAGCACTGGGG-TGTGAGAATGGATCCTGACTGCTGTCCCGG-CTGGCTAGAACGAGGTGGTGCCCTTCACCCTCCCAGCCAGTA-GGGTCTGCCAGAGGCTGTGGGTGAGGCAGGAGCCCCATGACCGTCCCGGCAATGAGGCTGCACCCAGCAGGCTCGAGTGAGGAATcttctcaagtaatgggatttaaacaggaagcagagcctcatgacatcatacccagcatgtccacaatacgat---aaaaaatgactaagaaccag----aaaaatggcaatttgaatgagaaaacacagtcaatcaacagataccaccaaca-gagaacacagaattcag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaaagagcaactacaaac
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515216 410 -  91010382 CACCTGGCCTTGCGCAGCAGCCAGCACCGGGG-TGTGAGGATGGATCCTGACTGCTGTCCCGG-CTGGCTAGAACGAGGTGGTGCCCTTCACCCTCCCAGCCAGTA-GGGTCTGCCAGAGCCTGTGGGTGAGGCAGGAGGCCCACGACTGTCCCGGCACTGAGGCTGCACCCAGCAGGCTCGAGTGAGGAATcttctcaagtaatgggatttaaacaggaagcggagcctcatgacatcatacccagcatgtccacaatacgat---aaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaacacagtcaatcaacagatacccccaaga-aagaacacagaagtcag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaaagagcaattacaaac
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       96933 410 -    438239 CACCTGGCCTTGCGTAGCAGCCAGCACTGGGG-TGTGAGAATGGATCCTGACTGCTGTCCCGG-CTGGCTAGAACGAGGTGGTGCCCTTCACCCTCCCAGCCAGTA-GGGTCTGCCAGAGCCTGTGGGTGAGGCAGGAGCCCCACGACTGTCCCGGCAATGAGGCTGCACCCAGCAGGCTCGAGTGAGGAATcttctcaagtaatgggatttaaacaggaagcagagcctcatgacatcatactcagcaagtccacaatacgat---aaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaacatagtcaatcaacagataccaccaaca-gagaacacagaattcag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaaagagcaactacaaac
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      137936 410 -    514179 CACCTGGCCTTGCGTAGCAGCCAGCACTGGGG-TGTGAGAATGGATCCTGACTGCTGTCCCGG-CTGGCTAGAACGAGGTGGTGCCCTTCACCCTCCCAGACAGTA-GGGTCTGCCAGAGCCTGTGGGTGAGGCAGGAGCCCCACGACTGTCCCGGCAATGAGGCTGCACCCAGCAGGCTCGAGTGAGGAATcttctcaagtaatgggatttaaacaggaagcagagcctcatgacatcatacccagcatgtccacaataggat---aaaaaatgaccaagaaccag----aaagatggcaatttgaatgagaaaacacagtcaatcaacagataccaccaaga-gagaacacagaagtcag----gtctaacaaggattttaaagtgactgtcataaaaaatacttcaaagagcaattacaaac
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203789915 407 + 204313951 CACCTGGCCTTGTGCGGCAGCAAGCACC--AG-TCTGAGAATGGACCCTGACCACTGTCCTGGCCTGGCTGGAACCACGTGCTGCCCTTCAccctcccagccggca-gggtccaccagaggccatggatgaagcaggagctccacgaccgaccaggcaaagaggcagcacccagcaggctagagtgaggagtcatctcaagtaacgggatttaaacaggaagc--agtctcatgacgtcatacccagtgtgtccacaatacgatttaaaaaaatgaccaagaaccag----aaaaatggcaatttgaatgagaaaac--agtcagtcaacagatatcaccaaga-gaggacacagaagtcaa----gtctaacaaggactttaaagtgactgtcat-aaaaatacttcggcgtgcaattacaaac
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15949750 358 +  16417988 CACCTGGCCTTGTGCCGCAGCAAGCACCGGGG-CGTGAGAATGGACCCTGACCACGGTCCTGGcctggctggagcgacgtggcgcccttcgccctcccgggcagca-gggtccgccagaggccgt--------------------------ccgggc--ggaggcggcgcccagcag--cggagggag-----------------gggactgaaacaggaagcggagtctcgtgacgtcacgcccagcgtgtccgcaatccgattt-aagaaacgaccaagaaccag----aaaaatggcaatttgaacgagaaaac--agtcgatcaacagctatcaccgaga-gaggacacagaagtcac----gtctaacaaggactttaaagtgactgtcataaaaaatact------tgtaactacaaac
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       28351 405 +    298490 CACCTGGCCTTGTGCAGCAGCAAGCACCTGGG-TGTGAGAATGGACCCTGACTACTGGCCTGGCCTGGCTGGAATGACGTGGTGCCCTTCACCCTCCCAGCCAGCA-GAGTCCGCCAGAGGCCATGGGTGAAGCCGGAGCCCCACGACCGTCCGGGC--AGAGGCGACACCCAGCAGGCTAGAGCGAGGAGTCATCTCGAGTAAGCGgatttaaacaggaagcagagtctcatgatgtcatacccagcatgtccacagtacgattt-aagaaacaaccaagaaccag----aaaaatggcaatttgaatgag--aac--agtcaatcaacaggtatcaccaaga-gaggacacagaagtcaa----gtctaacaaggactttaaagtgactgtaat--aaaatatttctgtgtgcaattacaaac
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25346214 406 -  25620257 CACCTGGCCTTGTGCAGCAGCAAGCACCGGGG-TGTGAGAATGGACCCTGACTACTGGCCTGGCCTGGCTGGAACGACGCGGTGCCCTTCACCCTCCCAGCCAGCA-GGGTGCGCCAGAGGCCATGGATGACGCAGGAGCCCCACGACCGCCCAGGC--AGAGGCGGCACCCAGCAGGCGAGAGTGAGGAGTCCGGTCAAGTAAGGGgatttaaacacgaagcagagtctcatgacgtcacacccagcatgtccacaacacgattt-acaaaatgaccgagaaccag----agaaacggcaatttgaatgagaaaac--agtcaatcaacagacatcacca--a-gaggacacagaagtcaa----gtctaacaaggactataaagtgactgtcat-aaaaatacttctgtgtgcaattacaaac
i aotNan1.NW_018503740v1   C 0 I 4556
s otoGar3.GL873745           1839338 344 -   2165740 CACCTGG-TTTGCACAGT--------------------GAGTGGACCCTGACCTCTGGC-----CTGGCTGTAA-GAGGTGGTGCCTTTCACTCTCCTGGCCACCAGGGGTCGACCAGAGGC--TGGGTG-----------------------------CAAGGCAATACCAA-----CTAGTGCTAGGAAT------GAGCcagaatttttaaatagaaagc--agtctcaaacatttatacctgg-gtgaccaacatataataa-aaaaaaatacaaaaacccag----aaaaacatcaatttgaatgggaaaacataatcaac--agagacaccagcactacaagaacagagaagtcag-attatcctacagggaatttaaaggaattgccat-aaaaatactccaatgaaaaattatgaat
i otoGar3.GL873745         I 19 I 2
s canFam3.chr34             11680430 361 +  42124431 ------GCCACGCACAGTGGCCAGCGATGGGACTATGCGAAGGGACCCTGACTACAACTCCAGCTGGGCTGCCAGGAGGTGGC-----------------CCACAA-GCATCTA-TGGAGGCTATGTGAGCAACAGGAGC-CTGTCACCACCTCAGAAACAAGGCAGTGCCCACTCAGTGCCAATA----------CTGTGTAATGagatttaaatcaggaac--agcctccta-----atacccaaaatgtccatgacataata--aaaaaatgaccaaaagctggaaaaaaaaatctcaatttgaatgagaaa----aaacaatcaacagacaccaacatg--gagatgacagaagtcagaattatttaacaagagttttaaagc-------------agtagttcaatgaacaattatcaac
i canFam3.chr34            C 0 C 0

a score=263188.000000
s hg38.chr5_KI270793v1_alt     10520 30 +    126136 --acctgagacaaa-ggaaaaact-a----g--tcttagc
s panTro5.chr5             181276296 30 - 181907262 --acctgagacaaa-ggaaaaaat-a----g--tcttagc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997760 30 - 183735486 --acctgagacaaa-ggaaaaaat-a----g--tcttagc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       88360 30 +    698298 --acctgagacaaa-ggaaaaaat-a----g--tcttagc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512824 29 - 121039945 --ccttgagacaaa-ggaaaaa-t-a----g--ccttagc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465651 30 - 180051392 --acttgagacaaa-ggaaaaact-a----g--tcttagc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181196770 30 - 181584905 --acttgagacaaa-ggaaaaact-a----g--tcttagc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      191627 30 -   1764207 --acttgacacaaa-ggaaaaact-a----g--tcttagc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      206745 30 -  16742782 --acttgagacaaa-ggaaaaact-a----g--tcttagc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90515626 30 -  91010382 --acttgagacaaa-ggaaaaact-a----g--tcttagc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1       97343 30 -    438239 --acttgagacaaa-ggaaaaact-a----g--tcttagc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      138346 30 -    514179 --acttgagacaaa-gcaaaaact-a----g--tcttagc
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203790322 30 + 204313951 --acttgagacaaa-aaagaaaac-a----g--tcttagc
i calJac3.chr2             C 0 I 4693
s saiBol1.JH378155          15950108 31 +  16417988 --gcttgagacaaa-agaaaaaataa----g--tcttcgc
i saiBol1.JH378155         C 0 I 5209
s cebCap1.NW_016108158v1       28756 30 +    298490 --acttgagacaaa-agaagaaat-a----g--tcttagc
i cebCap1.NW_016108158v1   C 0 I 4743
s otoGar3.GL873745           1839684 35 -   2165740 --tcttgaaacaagtgaaaaaaat-agaatg--tcttagc
i otoGar3.GL873745         I 2 C 0
s canFam3.chr34             11680791 34 +  42124431 actcctaaaacaaa-tgataaaac-g----ggaccttggt
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I

a score=844613.000000
s hg38.chr5_KI270793v1_alt     10550 127 +    126136 aaagaaacaggagatataaagaagaaacaaatagaaatttcaaa---gaaaaatacaataac-------------aaaaaat----cacaagagcagtttaatagcaaaatggagatgacagatgaaaactgt--------------------------aaaaccgt----------------agagaa---------
s panTro5.chr5             181276326 126 - 181907262 aaagaaacaggagatataaagaagaaacaaatagaaatttcaaa---gaaaaatacaataac-------------aaaaaat----caca-gagcagtttaatagcaaaatggagatggcagatgaaaactgt--------------------------aaaactgt----------------agagaa---------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997790 127 - 183735486 aaagaaacaggagatataaagaagaaacaaatagaaatttcaaa---gaaaaatacaataac-------------aaaaaat----cacaagagcagtttaatagcaaaatggagatggcagatgaaaactgt--------------------------aaaactgt----------------agagaa---------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       88390 127 +    698298 aaagaaacaggagatataaagaagaaacaaatagaaatttcaaa---gaaaaatacaataac-------------aaaaaat----cacaagagcagtttaatagcaaaatggagatgacagatgaaaactgt--------------------------aaaaccat----------------agagaa---------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512853 128 - 121039945 aaagaaacagaagatataaagaagaaacaaatagaaatttcaaa---gaaaaatacagtaac------------aaaaaaat----cacaagagcagtttaatagcaaaatggagatgacagatgaaaactgt--------------------------aaaactgt----------------agagaa---------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179465681 127 - 180051392 aaagaaacagaagatataaagaagaaacaaatagaaatttcaaa---gaaaaatacaataac-------------aaaaaat----cacaagagcagtttaacagcaaaatggagatgacagatgaaaaccat--------------------------aaaactgt----------------aaagaa---------
i rheMac8.chr6             C 0 I 2852
s macFas5.chr6             181196800 127 - 181584905 aaagaaacagaagatataaagaagaaacaaatagaaatttcaaa---gaaaaatacaataac-------------aaaaaat----cacaagagcagtttaacagcaaaatggagatgacagatgaaaaccat--------------------------aaaactgt----------------aaagaa---------
i macFas5.chr6             C 0 I 2861
s macNem1.NW_012012389v1      191657 127 -   1764207 aaagaaacagaagatataaagaagaaacaaatagaaatttcaaa---gaaaaatacaataac-------------aaaaaat----cacaagagcagtttaacagcaaaatggagatgacagatgaAAACCAT--------------------------AAAACTGT----------------AAAGAA---------
i macNem1.NW_012012389v1   C 0 I 2866
s cerAty1.NW_012009470v1      206775 127 -  16742782 aaagaaacagaagatataaagaagaaacaaatagaaatttcaaa---gaaaaatacaataac-------------aaaaaat----cacaagagcagtttaacagcaaaatggagatgacagatgaAAACCGT--------------------------AAAACTGT----------------AAAGAA---------
i cerAty1.NW_012009470v1   C 0 I 1477
s chlSab2.chr4              90515656 127 -  91010382 aaagaaacagaagatataaagaagaaacaaa-agaaatttcaaa---gaaaaatacaataac------------aaaaaaat----cacaacagcagtttaatagtaaaacggagatgacagatgaAAACCat--------------------------aaaactgt----------------aaagaa---------
i chlSab2.chr4             C 0 I 2599
s manLeu1.NW_012110441v1       97373 127 -    438239 aaagaaacagaagatataaagaagaaacaaatagaaatttcaaa---gaaaaatacaataac-------------aaaaaat----cacaagagcagtttaacagcaaaatggagatgacagatgaAAACCGT--------------------------AAAACTGT----------------AAAGAA---------
i manLeu1.NW_012110441v1   C 0 I 11177
s colAng1.NW_012118799v1      138376 127 -    514179 aaagaaacagaagatacaaagaagaaacaaatagaaatttcaaa---gaaaaatacaataac-------------aaaaaat----cacaagagcagtttaatagcaaaatggagatgacagatgaAAACCGt--------------------------aaaactgt----------------aaagaa---------
i colAng1.NW_012118799v1   C 0 I 3919
s otoGar3.GL873745           1839719 138 -   2165740 aaaggaactgaagctataaagaagaaacaaatagaaatttcaaaaatgaaaaatataataactgaaaccagggggaaaaaaa----ctcaaaagcagctcaatagcagaatggagatgacaaagaaaa-------------------------------aaacttga----------------gaagag---------
i otoGar3.GL873745         C 0 I 3
s canFam3.chr34             11680825 187 +  42124431 caaaaaacagaagacata---aagaaacaaaaagaaattttagaaatgtaaaatacaataac--------taaataaaaaataccctacagaagcagctccgtaacagaatggagatgacagaagaaaaaaattcaaagtaaatgcaaagatattgatcaaaattgtactatttttccagcagagagaaaacagacaa
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I

a score=89042.000000
s hg38.chr5_KI270793v1_alt     10677 112 +    126136 aaactaagagaa-----------------------------------tctgtcacaa-------gcagacct-------gccctaag-------------------acaactgctgaaaaaatttttt----caaatataaag--------------------------gaaaaac----gaaaga----aacctagagcatcgtggaatgaagaaaa
s panTro5.chr5             181276452 112 - 181907262 aaactaagagaa-----------------------------------tctgtcacaa-------gcagacct-------gccctaag-------------------acaactgctgaaaaaatttttt----caaatataaag--------------------------gaaaaac----aaaaga----aacctagagcatcgtgaaatgaagaaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182997917 112 - 183735486 aaactaagagaa-----------------------------------tctgtcacaa-------gcagacct-------gccctaag-------------------acaactgctgaaaaaatttttt----caaatataaag--------------------------gaaaaac----gaaaga----aacctagagcatcgtgcaatgaagaaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       88517 112 +    698298 aaactaagagaa-----------------------------------tctgtcacaa-------gcagacct-------gccctaag-------------------acaactgctgaaaaaatttttt----caaatataaag--------------------------gaaaaat----gaaaga----aacctagagcatcgtggaatgaagaaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120512981 116 - 121039945 aaactaagagaa-----------------------------------cttgtcacga-------gcagacct-------gccctaag-------------------acaattgctgaagaaatttttt----caaatataaag--------------------------gaaaaacgaaagaaaga----aacctagagcattgtggaatatagaaaa
i nomLeu3.chr6             C 0 C 0
s otoGar3.GL873745           1839860 118 -   2165740 atgcaaagacag-----------------------------------attgatctaa-------actgtcca-------gtctga---------------------tcaacagaggaaaaaataggctacagaaaaaaaaaaa--------------------------gaaaaaa----gaaggaacagagccttggggacctgtgaataaggaaaa
i otoGar3.GL873745         I 3 I 2744
s canFam3.chr34             11681012 205 +  42124431 aaataaagagcagagcctcaggtgtccatggaaaaagatctaacatttctgtcaaagttccaatgcagttccaattagagttccaagaagagaaagaaaagacattacaactaa-gaaaaaattctag----caattaaagaaataatggctgaaagcttatcaaatttggcaaaa----gacata----aagctacatattcaagaagttgagaaaa
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e chlSab2.chr4              90515783 2599 -  91010382 I
e cerAty1.NW_012009470v1      206902 1477 -  16742782 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I
e macFas5.chr6             181196927 2861 - 181584905 I
e rheMac8.chr6             179465808 2852 - 180051392 I

a score=93151.000000
s hg38.chr5_KI270793v1_alt     10789 115 +    126136 --aataacagaacagata-aacatgcagataaatatgtttcctcctgagttactgaaaaggctaggtatttaaaaaaaatcataatattaatacggttctcaaggtatgcagaggaaa
s panTro5.chr5             181276564 110 - 181907262 --aataacagaacagata-aacatgcagataaatatgtttcctcctgagttactgaaaaggctaggtatttttaaaaaatcgtaatattaatacggttctcaagg-----agaggaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182998029 115 - 183735486 --aataacagaacagata-aacatgcagataaatatgtttcctcctgagttactgaaaaggctaggtatttttaaaaaatcgtaatattaatacggttctcaaggtatgcagaggaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       88629 114 +    698298 --aataacagaacagata-aacatgcagataaatatgtttcctcctgagttactgaaaaggctaggta-ttaaaaaaaatcgtaatattaatacagttctcaaggtatgcagaggaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120513097 112 - 121039945 --aataacggaacagata-aacatgcaaataa--atgtttcctcctgagttattgaaaaggctaggta-tttaaaaaaatcgtaatattaatatggttctcaaggtatgcagaggaaa
i nomLeu3.chr6             C 0 C 0
s canFam3.chr34             11681217 113 +  42124431 ccccaaacagaataaagacaaaaaaaaaaaaaaaaagccacccccagatacatcagaaa---taaac--ttctaaaaactaaaaacagtgaaagaatctcgaaagcaaccagagagaa
i canFam3.chr34            C 0 I 226
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e chlSab2.chr4              90515783 2599 -  91010382 I
e cerAty1.NW_012009470v1      206902 1477 -  16742782 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I
e macFas5.chr6             181196927 2861 - 181584905 I
e rheMac8.chr6             179465808 2852 - 180051392 I

a score=213153.000000
s hg38.chr5_KI270793v1_alt     10904 236 +    126136 tacttaagacaactaaattgtaaaggggagaggatagagacctaaatggtgataaagtttctatatttcacttagaagtagtaaaatacctgtacaagtaaactgtgttgaattacataaatacattgtaatttgtatagccaccactatgaaaaccatacaaggagatatacaccaaaacataacagataaatcaaaatgagatactaaaaatattcgagtaagtcacagcaggc
s panTro5.chr5             181276674 236 - 181907262 tacttaagacaactaaattgtaaaggggataggatagagacctaaatggtgataaagtttctatatttcacttagaagtggtaaaatatctgtacaagtaaactgtgttgaattacataaatacattgtaatttgtatagccaccactatgaaaaccatacaaggagatatacaccaaaacataacagataaatcaaaatgagatactaaaaatattcgagtaagtcacagcaggc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182998144 236 - 183735486 tacttaagacaactaaattgtaaaggggataggatagagacctaaatggtgataaagtttctatatttcacttagaagtggtaaaatatctgtacaagtaaactgtgtggaattacataaatacattgtaatttgtatagccaccactatgaaaaccacacaaggagatatacaccaaaacataacagataaatcaaaatgagatactaaaaatattcgagtaagtcacagcaggc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       88743 236 +    698298 tacttaagacaactaaattgtaaaggggagaggatagagacctaaatggtgataaagtttctatatttcacttagaagtggtaaaatatctatacaagtaaactgtgctgaattacataaatacattgtaatttgtatagccaccactatgaaaaccatacaaggagatatacaccaaaacataacagataaatcaaaatgagatactaaaaatattcgagtaagtcacagcaggc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120513209 236 - 121039945 tacttaagacaactaaattgtaaaggggagtggatagagacctaaatggtgataaagtttctgtatttcacttagaagtggtaaaatatctgtacaagtaaactgtgttgaatgacataaatacattgtaatttgtatagccaccactatgaaaaccatacaaggagatatacaccaaaacataacagataaatcaaaatgagacactaaaaatattcgagtaagtcacaggaggc
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e canFam3.chr34             11681330 226 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e chlSab2.chr4              90515783 2599 -  91010382 I
e cerAty1.NW_012009470v1      206902 1477 -  16742782 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I
e macFas5.chr6             181196927 2861 - 181584905 I
e rheMac8.chr6             179465808 2852 - 180051392 I

a score=300723.000000
s hg38.chr5_KI270793v1_alt     11140 328 +    126136 agg-aaaagggaaacagaagaaaa-----aacacaggaaacaatcaaaaaacaataaaatgg---cacacttaagttctaatatttaacaattagattaaa--tgtaaatggcc-taaaacactactacaagacaga---gattagcagagtgaataaaaataatgaaccaggaaactaatttc-----------aaatataaagatacaggtaggttaaaagttcaaagc-aatggataggaaaagatac----gccatgcaa-----------------aaaccaatcaa---------aagaagctaccg-taacaacagta---------atat-----caaataagacagatgtctcaa---------caaagaaaatt-----accaggaaaaaagaggaacaaggcc
s panTro5.chr5             181276910 328 - 181907262 agg-aaaagggaaacagaagaaaa-----aacacaggaaacaatcaaaaaacaataaaatgg---cacacttaagtcctaatatttaacaattagattaaa--tgtaaatggcc-tacaacactactacaagacaga---gattagcagagtgaataaaaataatgaaccaggaaactaatttc-----------aaatataaagatacaggtaggttaaaagttcaaagc-aatggataggaaaagatac----gccatgcaa-----------------aaaccaatcaa---------aagaagctacag-taacaacagta---------atat-----caaataagacagatgtctcaa---------caaagaaaatt-----accaggaaaaaagaggaacaaggcc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182998380 328 - 183735486 agg-aaaagggaaacagaagaaaa-----aacacaggaaacaatcaaaaaacaataaaatgg---cacacttaagttctaatatttaacaattagattaaa--tgtaaatggcc-tacaacactactacaagacaga---gattagcagagtgaataaaaataatgagccaggaaactaatttc-----------aaatataaagatacaggtaggttaaaagttcaaagc-aatggataggaaaagatac----gccatgcaa-----------------aaaccaatcaa---------aagaagctacag-taacaacagta---------atat-----caaataagacagatgtctcaa---------caaagaaaatt-----accaggaaaaaagaggaacaaggcc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       88979 328 +    698298 agg-aaaagggaaacagaagaaaa-----aacacaggaaacaatcaaaaaacaataaaatgg---cacacttaagttctaatatttaacaattagattaaa--tgtaaatggcc-taaaacactactacaagacaga---gattagcagagtgaataaaaataatgaaccaggaaactaatttc-----------aaatataaagatacaggtaggttaaaagttcaaagc-aatagacaggaaaagatac----gccatgcaa-----------------aaaccaatcaa---------aagaagctacag-taacaacagta---------atat-----caaataagacagatgtctcaa---------caaagaaaatt-----accaggaaaaaagaggaacaaggcc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120513445 330 - 121039945 aggaaaaagggtaacagaagaaaa-----aacacaggaaacgatcaaaaaacaataaaatgg---tacacttaagttctaatatttaacaattagattaaa--tgtaaatggcc-taaaacactactacaagacaga---gattagcagagtgaataaaaataatgaaccaggaaactaatttc-----------aaatataaagatacaggtaggttaaaagttcaaagcaaatggataggaaaagatac----gccatgcaa-----------------aaaccaatcaa---------aagaagctacag-taacaacagta---------atat-----caaataagacagatgtctcaa---------caaagaaaatt-----accaggaaaaaagaggaagaaggtc
i nomLeu3.chr6             C 0 C 0
s canFam3.chr34             11681556 408 +  42124431 aaa-ggaaggataacagaagaaaacctggagcatcagaaatga--aaaaaataatgaaacaggtaaacatctagctaaaaatgttt-ccttctaatttaaaattgtggacgaccataaaagaaaaaaaaaagattaatgtggttctcaaggaatacagagaaaatatttaagacaactaaattataaaggagaagaaaaccaaagaaaacaatgggtgtaaggttttga-c-attttgcatgaaggggtaaaatggccatacaagtagagtgtattaaattatacaaatccactgcaatttataaagcaaccgctaaaaacactatacaaagagatatgctcaaaaatataatagataactcaaatgaaacactaaaaaaaatcctcaaaccatagaaaggcaggaaaagggaa
i canFam3.chr34            I 226 I 260
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e chlSab2.chr4              90515783 2599 -  91010382 I
e cerAty1.NW_012009470v1      206902 1477 -  16742782 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I
e macFas5.chr6             181196927 2861 - 181584905 I
e rheMac8.chr6             179465808 2852 - 180051392 I

a score=237774.000000
s hg38.chr5_KI270793v1_alt     11468 270 +    126136 caggcaccgtggctcacacttgtaatcccagcactttgggagcccagcagagatcacctgaggtcaggagttcgagactagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattaggcaggcgtgatggcaggcgcctgtaatcccagctactcgggaagctgaagcagaggaatcatgtgaacccgggaggcagaggttgcagtgacccaagatcgtgccactgcactccagcctgggggacaagaaggaaactc
s panTro5.chr5             181277238 258 - 181907262 caggcaccatggctcacgcttgtaatcccagcactttggga------------tcacctgaggtcaggagttcgagactagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattaggcaggcgtggtggcaggtgcctgtaatcccagctactcgggaagctgaagcagaggaatcatgtgaacccgggaggcggaggttgcagtgacccaagatcgtgccactgcactccagcctgggggacaagaaggaaactc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182998708 258 - 183735486 caggcaccgtggctcacgcttgtaatcccagcactttgggc------------tcacctgaggtcaggagttcgagactagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattaggcaggcgtggtggcaggtgcctgtaatcccagctactcgggaagctgaagcagaggaatcatgtgaacccgggaggcggaggttgcagtgacccaagatcgtgccactgcactccagcctgggggacaagaaggaaactc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       89307 270 +    698298 caggcaccgtggctcacgcttgtaatcccagcactttgggagcccagcagagatcacctgaggtcaggagttcgagactagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattaggcaggcgtggtggcaggtgcctgtaatcccagctactcgggaagctgaagcagaggaatcatgtgaacccgggaggcggaggttgcagtgacccaagatcgtgccactgcactccagcctgggggacaagaaggaaactc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120513775 270 - 121039945 caggcacggtggctcacgctcgtaatcccagcattttgggagcccggcagagatcacctgaggtcaggaattcgagactagcctggccaacatggagaaaccccgtctctactaaacatacaaaaattaggcaggcgtggtgacaggtgcctgtaatcccagctactcgggaagctgaagcagaggaatcatgtgaacctgggaggcggaggttgcagtgacccaagatcgtgccactgcactccagcctgggggacaagaaggaaactc
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e canFam3.chr34             11681964 260 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e chlSab2.chr4              90515783 2599 -  91010382 I
e cerAty1.NW_012009470v1      206902 1477 -  16742782 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I
e macFas5.chr6             181196927 2861 - 181584905 I
e rheMac8.chr6             179465808 2852 - 180051392 I

a score=529252.000000
s hg38.chr5_KI270793v1_alt     11738 499 +    126136  
s panTro5.chr5             181277496 499 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182998966 494 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       89577 501 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120514045 490 - 121039945  
i nomLeu3.chr6             C 0 C 0
s canFam3.chr34             11682224 457 +  42124431  
i canFam3.chr34            I 260 I 193
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e chlSab2.chr4              90515783 2599 -  91010382 I
e cerAty1.NW_012009470v1      206902 1477 -  16742782 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I
e macFas5.chr6             181196927 2861 - 181584905 I
e rheMac8.chr6             179465808 2852 - 180051392 I

a score=62306.000000
s hg38.chr5_KI270793v1_alt     12237 72 +    126136 gccgggcgcggtggatcatgcctgtaatcccagcactttgggaggccgaggtgggc-ggatcatgaggtcagg
s panTro5.chr5             181277995 72 - 181907262 gccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggtgggc-ggatcatgaggtcagg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182999460 72 - 183735486 gccgggcacagtggctcatgcctgtaatcccagcactttgggaggccgaggtgggc-ggatcatgaggtcagg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       90078 73 +    698298 gccgggcgcggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcgggatcacgaggtcagg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120514535 72 - 121039945 gccaggcgtggtggctcatgtctgtaatcccagcactttgggaggccgaggcgggc-ggatcacgatgtcagg
i nomLeu3.chr6             C 0 I 112
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e canFam3.chr34             11682681 193 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e chlSab2.chr4              90515783 2599 -  91010382 I
e cerAty1.NW_012009470v1      206902 1477 -  16742782 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I
e macFas5.chr6             181196927 2861 - 181584905 I
e rheMac8.chr6             179465808 2852 - 180051392 I

a score=148822.000000
s hg38.chr5_KI270793v1_alt     12309 175 +    126136 agttccagctactcgggaggctgaggcaggagaatggcatgaacccaggaggcagagctttcaatgagccaagattgcgtcactgcactccagcctgggtgacagagcgagactccacctcaaaaaaaaaaaaaaaaaaaaaa--------ttcacaggtcaaacaggaagtatcgagggaaa
s panTro5.chr5             181278067 183 - 181907262 agttccagctactcgggaggctgaggcaggagaacggcatgaacccgggaggcagagctttcaatgagccaagattgcgccactgcactccagcctgggtgacagagcgagactccacctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattcacaggtcaaacaggaagtatcgagggaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182999532 168 - 183735486 agttccagctactcgggaggctgaggcaggagaacggcatgaacccgggaggcagagctttcaatgagccaagattgcgtcacggcactccagcctgggtgacagaacgagactccacctcaaaaaaaaaaaaaaa---------------ttcacaggtcaaacaggaagtatcaagggaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       90151 178 +    698298 agttccagctactcgggaggctgaggcaggagaacggcatgaacccgggaggcagagctttcaatgagccaagattgcgccactgcactccagcctgggtgacagagcgagactccacctcaaaaaaaaaaaaaaaaaaaaaaaaa-----atcacaggtcaagcaggaagtatcgagggaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120514719 178 - 121039945 agtcccagctactcgggaggctgaggcaggagaacggcatgaacccaggaggcagagctttcaatgagccaagatcgtgccactgcactccagcctggatgacagagcgagactccacctcaaaaacaaaacaaacaaacaaaaaa-----ttcacaggtcaaacaggaagtatcgaggaaaa
i nomLeu3.chr6             I 112 C 0
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e canFam3.chr34             11682681 193 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e chlSab2.chr4              90515783 2599 -  91010382 I
e cerAty1.NW_012009470v1      206902 1477 -  16742782 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I
e macFas5.chr6             181196927 2861 - 181584905 I
e rheMac8.chr6             179465808 2852 - 180051392 I

a score=184892.000000
s hg38.chr5_KI270793v1_alt     12484 165 +    126136 ttcttaaaatacgctgaactggatgaaaattaaaatacaacataacaaaatttgtggatacagctaaagcagtgcttacagggaaacttgtggcac----tgtttataatagaaaataggaaagtctcaaatcaataatctacagttttgcctcaaggatttag-aaaag
s panTro5.chr5             181278250 165 - 181907262 ttcttaaaatacgctgaactggatgaaaattaaaatacaacataacaaaatttgtggatacagctaaagcagtgcttacagggaaacttgtggcac----tatttataatagaaaataggaaagtctcaaatcaataatctacagttttgcctcaagaatttag-aaaag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182999700 165 - 183735486 ttcgtaaaatacgctgaactggatgaaaattaaaatacaacataacaaaatttgtggatacagctaaagcagtgcttacagggaaacttgtggcac----tatttataatagaaaataggaaagtctcaaatcaataatctacagttttgcctcaagaatttag-aaaag
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       90329 165 +    698298 ttcttaaaatacgctgaactggatgaaaattaaaatacaacataacaaaatttgtggatacagctaaagcagtgcttacagggaaacttgtggcac----tatttatgatagaaaataggaaagtctcaaatcaataatctacagttttgcctcaagaatttag-aaaag
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120514897 166 - 121039945 ttcttaaaatatgctgaactggatgaaaattaaaatacaacataacaaaatttgtggatacagctaaagtagtgcttagaggaaaacttgtggcac----tatttataatagaaaataagaaagtctcaaatcaataatctacagttttgcctcaagaatctagaaaaag
i nomLeu3.chr6             C 0 C 0
s canFam3.chr34             11682874 159 +  42124431 tttttaaaaaat-----atatattgaaaatgaaaat-----ataacaaaatttgtgaatgcagctagagctgtgcttagagaaaaatttacagcactaaatatttatactagaaaattaaaaggcctcaaatcaataatctaaactctcacctcaagaatctac-aaaag
i canFam3.chr34            I 193 I 2678
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e chlSab2.chr4              90515783 2599 -  91010382 I
e cerAty1.NW_012009470v1      206902 1477 -  16742782 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I
e macFas5.chr6             181196927 2861 - 181584905 I
e rheMac8.chr6             179465808 2852 - 180051392 I

a score=266028.000000
s hg38.chr5_KI270793v1_alt     12649 302 +    126136 tataaaataaatgcaaagcaagcagaaagaaggaaataaaaaaaagcagaaatcaatgaaatttgaaactagaaaaacactggagaaaaatcaaacccaaagtcggttctttgaaactatcaataacattcacaagcctctagcaagactaaaaaagaaagaatacacagattatcaacatcaggaacagaaaagggatatccctgtaaaccttgtagcactaatcagggaagaagggaggactcggcatgtcccgaggtcagctgccctctcacctgcttcctcagagccctgtggtgcct
s panTro5.chr5             181278415 302 - 181907262 tataaaataaatgcaaagcatgcagaaaggaggaaattttaaaaagcagaaatcaatgaaatttgaaactagaaaaatactggagaaaaatcaaacccaaagtcggttctttgaaactatcaataacattcagaagcctctagcaagactaaaaaagaaagaatacacagattatcaatatcaggaacagaaaagggatatccctgtaaaccttgtagcactaatcagggaagaagggaggactcggcatgtcccgaggtcagctgccctctcacctgcttcctcagagccctgtggtgcct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             182999865 302 - 183735486 tataaaataaatgcaaagcatgcagaaagaaggaaattttaaaaagcagaaatcaatgaaatttgaaactagaaaaatactggagaaaaatcaaacccaaagtcggttctttgaaactatcaataacattcagaagcctctagcaagactaaaaaagaaagaatacacagattatcaatatcaggaacagaaaagggatatccctgtaaaccctgtagcactaatcagggaagaagggaggactcggcatgtcccgaggtcagctgccctctcacctgcttcctcagagccctgtggtgcct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       90494 301 +    698298 tataaaataaatgcaaagcaagcagaaagaaggaaatttaaaaaagcagaaatcaatgaaatttgaaactagaaaaacactggagaaaaatcaaacccaaagtcggttctttgaaactatcaataacattcagaagcctctagcaagactaaaaaagaaagaatacacagattatcaatatcaggaacagaaaagggatatccctgtaaaccttgtagcactaatcagggaagaagggaggactcgg-atgtcccgaggtcagctgccctctcacctgcttcctcagagccctgtggtgcct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120515063 297 - 121039945 tataaaataaatgcaaagcaagcagaaagaaggaaataaaaaaaagcagaaatcaatgaaatttgaaactataaaaacactggagaaaaatcaaacccaaagtcggttctttgaaactatcaataacattcgcaagcctctagcaagactaaaaaagaaagaatacacagattatcgatatcag-----gaaAAGGGATAtccctgtaaaccttgcagcactaatcagggaagaagggaggACTCGGTGTGTCCCGaggtcagctgccctctcacctgcttcctcagagccacgtggtgcct
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e chlSab2.chr4              90515783 2599 -  91010382 I
e cerAty1.NW_012009470v1      206902 1477 -  16742782 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I
e macFas5.chr6             181196927 2861 - 181584905 I
e rheMac8.chr6             179465808 2852 - 180051392 I

a score=6876.000000
s hg38.chr5_KI270793v1_alt     12951 2 +    126136 ac
s panTro5.chr5             181278717 2 - 181907262 ac
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183000167 2 - 183735486 ac
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       90795 2 +    698298 ac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120515360 2 - 121039945 ac
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179468660 2 - 180051392 ac
i rheMac8.chr6             I 2852 C 0
s macFas5.chr6             181199788 2 - 181584905 ac
i macFas5.chr6             I 2861 C 0
s cerAty1.NW_012009470v1      208379 2 -  16742782 ac
i cerAty1.NW_012009470v1   I 1477 C 0
s chlSab2.chr4              90518382 2 -  91010382 ac
i chlSab2.chr4             I 2599 C 0
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I
e macNem1.NW_012012389v1      191784 2866 -   1764207 I

a score=1653590.000000
s hg38.chr5_KI270793v1_alt     12953 434 +    126136 tgcctcaggatcacttggattttgtcacgaggttacagttccccttaaccactctacagat----aataac-----------ctggacattataaaccgttaagttttccatttgagatattctttcaggacctggggactgatgccagctggtct-aaagggccccgcaagcggattcaccaaagaatgcagtttccacaccctgataattccatggcccttacctccaccaactgacaacaccaatcttccagctcctcacagtcctgttcctctaaaacccccagctcaggctgggtgtaggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgagatcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatataaaaaattagccgggcatggtggcgcgtg
s panTro5.chr5             181278719 434 - 181907262 tgcctcaggatcacttggattttgtcacgaggttacagttccccttaaccactctacagat----aataac-----------ctggacattataaaccgttaacttttccatttgagatattctttcaggacctggggactgatgccagctggttt-aaagggccccacaagcagatgcaccaaagaatgcagtttccacaccctgataattccatggcccttacctccaccaattgacaacaccaattttccagctcctcacaatcctgttcctctaaaacccccagctcaggctgggtgtgggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgagatcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatataaaaaattagccgggcatggtggcgcgtg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183000169 435 - 183735486 tgcctcaggatcacttggattttgtcacgaggttacagttccccttaaccactctacagat----aataac-----------ctggacattataaactgttaagttttccatttgagatattctttcaggacctggggactgatgccagctggtctaaaagggccccacaagcagatgcaccaaagaatgcagtttccacaccctgataattccatggcccttacctccaccagttgacaacaccaattttccagctcctcacaatcctgttcctctaaaacccccagctcaggctgggtgtgggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgagctcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatataaaaaattagccgggcatggtggcgcgtg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       90797 434 +    698298 tgcctcaggatcacttggattttgtcacgaggttacagttccccttaaccactctacagat----aataac-----------ctggacattataaaccgttaagttttccatttgagatattctttcaggacctggggactgatgccagctggtct-aaagggccccacaagcagattcaccaaagaatgcagtttccacaccctgataattccatggcccttacctccaccaattgacaacaccaattttccagctcctcacaatcctgttcctctaaaacccccagctcaggctgggtgtaggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgagatcaggagttcaagaccagcctggccaacatggtgaaaccccgtctctactaaaaatataaaaaattagccgggcatggtggcacgtg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120515362 433 - 121039945 tgcctcaggatcatgtggactttgtcacgaggttacagttccccttaactactctacagat----aataac-----------ttggacattataaaccgttaagttttccatttgagatattctttcaggacctggggactgatgccagctggtct-aaaggaccccacaagcggattcaccaaagaatgcagtttccacaccctgataattccatggcctttaccttgaccaattgacaacaccaattttccagccccttacaatcctgttcctttaaaaaccccagctcaggctgggtgt-ggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggtggatcacctgagatcaggagttcaagaccagcctggctaatatggtgaaaccctgtctctactaaaaatataaaaaattagccgggcgtggtggcacgcg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179468662 444 - 180051392 tgcctcaggatcacatggactttgtcacgatgttactgttccccttaaccactccacagag----aactactctacagattattggacattataaaacattaagttttccatttgagatattctttgaggacctggggactgatgccatctggtct-aaaggaccccacaagcggattcaccaaagaatgcagtttccataccctgataattccatggcccttacctcgaccaactgacaacatcaattttccagcccctcacaatcctgttcctttcaagaccccagctcaggctgggcgt-ggtggctcatgcctgtaatcccagcactttgggaagccaaggcaggtggatcacctgagatcaggagctcaagaccagcctggccaacatggtgaaacactgtctctactaaatatacaaaaaattagccgggcttggtggcgtgcg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181199790 444 - 181584905 tgcctcaggatcacatggactttgtcacgatgttactgttccccttaaccactccacagag----aactactctacagattattggacattataaaacattaagttttccatttgagatattctttgaggacctggggactgatgccatctggtct-aaaggaccccacaagcggattcaccaaagaatgcagtttccataccctgataattccatggcccttacctcgaccaactgacaacatcaattttccagcccctcacaatcctgttcctttcaagaccccagctcaggctgggtgt-ggtggctcatgcctgtaatcccagcactttgggaagccaaggcaggtggatcacctgagatcaggagctcaagaccagcctggccaacatggtgaaacactgtctctactaaatatacaaaaaattagccgggcttggtggcatgcg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      194650 444 -   1764207 tgcctcaggatcacatggactttgtcacgatgttactgttccccttaaccactctacagag----aactactctacagattattggacattataaaacattaagttttccatttgaaatattctttgaggacctggggactgatgccatctggtct-aaaggaccccacaagcggattcaccaaagaatgcagtttccacaccctgataattccatggcccttacctcgaccaactgacaacatcaattttccagcccctcacaatcctgttcctttcaagaccccagctcaggctgggcgt-ggtggctcatgcctgtaatcccagcactttgggaagccaaggcaggtggatcacctgagatcaggagctcaagaccagcctggccaacatggtgaaacactgtctctactaaatatacaaaaaattagccgggcttggtggcgtgcg
i macNem1.NW_012012389v1   I 2866 C 0
s cerAty1.NW_012009470v1      208381 448 -  16742782 tgcctcaggatcacatggactttgtcacgatgttactgttccccttaaccactctacagagaactaactactctacagattattggacattataaaacattaagttttccatttgagatactctttgaggacctggggactgatgccaactggtct-aaaggaccccacaagcggattcaccaaagaatgcagtttccacaccctgataattccatggcccttacctcgaccaactgacaacatcaattttccagcccctcacaatcctgttcctttcaagaccccagctcaggctgggcgt-ggtggctcatgcctgtaatcccagcactttgggaagccaaggcaggtggatcacctgagatgaggagctcaagaccagcctggccaacatggtggaacactgtctctactaaatatacaaaaaattagccgggcttggtggcgtgcg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90518384 444 -  91010382 tgcctcaggatcacgtggactttatcacgatgttactgttccccttaactactctacagag----aactactctacagattattggacattacaaaacgttaagtttttcatgtgagatattctttgaggacctggggactgatgccagctggtct-aaaggaccccacaagcggattcaccaaagaatgcagtttccacaccctgataattccatggcccttacctcgaccaactgacaacatcaattttccagcccctcacaatcctgttcctttcaagacccccgctcaggctgggcat-ggtggctcatgcctgtaatcccagcactttgggaagccaaggcaggtggatcacctgagatcaggagctcaagaccagcctggccaacatggtaaaacaccctctctactaaatatacaaaaaattagccgggcttggtggtgtgcg
i chlSab2.chr4             C 0 C 0
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e colAng1.NW_012118799v1      138503 3919 -    514179 I

a score=580777.000000
s hg38.chr5_KI270793v1_alt     13387 125 +    126136 cttgtaatcccagctactcaggaggctgagt-----gaatcacttgaacctgggaggtggaggttgcagtgagctgagattgtgccactgcactccaacctggacgacagagtgagactccgtcta-----aaaa
s panTro5.chr5             181279153 125 - 181907262 cttgtaatcccagctactcaggaggctgagt-----gaatcacttgaacctgggaggtggaggttgcagtgagctgagattgtgccactgcactccaacctggacgacagagtgagactccatcta-----aaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183000604 125 - 183735486 cttgtaatcccagctactcaggaggctgagt-----gaatcacttgaacctgggaggtggaggttgcagtgagctgagattgtgccactgcactccaacctggacgacagagtgagactccgtcta-----aaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       91231 125 +    698298 cttgtaatcccagctactcaggaggctgagt-----gaatcacttgaacctgggaggcggaggttgcagtgagctgagattgcgccactgcactccaacctggacgacagagtgagactccgtcta-----aaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120515795 125 - 121039945 cttgtaatcccagctactcaggaggctgagt-----gaatcacctgaacctgggaggtggaggctgcagtgagctgagattgtgccactgcactccaacctggacgacagagtgagactccatcta-----aaaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179469106 131 - 180051392 cttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcaatgagctgagattatgcaactgcactccagcctggacgacagagtgagactccgtttc----aaaaa
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181200234 130 - 181584905 cttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcaatgagctgagattatgcaactgcactccagcctggacgacagagtgagactccgtctc-----aaaa
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      195094 130 -   1764207 cttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcaatgagctgagattatgcaactgcactccagcctggacgacagagtgagactccgtctc-----aaaa
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      208829 132 -  16742782 cttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcaatgagctgagattatgcaactgcactccagcctggagaacagagtgaaactccgtctc---aaaaaa
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90518828 135 -  91010382 cttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcactgagttgagattatgcaactgcactccagcctggatgacagagtgagactccatttcaaaaaaaca
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      142422 130 -    514179 cttgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcactgagctgagattatgcaactgcacttcagcctgggcgacagagtgagactccgtctc-----aaaa
i colAng1.NW_012118799v1   I 3919 C 0
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e saiBol1.JH378155          15950139 5209 +  16417988 I
e calJac3.chr2             203790352 4693 + 204313951 I
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I

a score=27931.000000
s hg38.chr5_KI270793v1_alt     13512  9 +    126136 aaaa--aa---acc
s panTro5.chr5             181279278  8 - 181907262 aaaa--aa----cc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183000729  8 - 183735486 aaaa--aa----cc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       91356 12 +    698298 aaaa--aaaaaacc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120515920 12 - 121039945 aaaa--aaaaaaac
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179469237 14 - 180051392 aaaaccaaaaaacc
i rheMac8.chr6             C 0 I 2
s macFas5.chr6             181200364 14 - 181584905 aaaaccaaaaaacc
i macFas5.chr6             C 0 I 2
s macNem1.NW_012012389v1      195224 14 -   1764207 aaaaccaaaaaacc
i macNem1.NW_012012389v1   C 0 I 2
s cerAty1.NW_012009470v1      208961 14 -  16742782 aaaaccaaaaaacc
i cerAty1.NW_012009470v1   C 0 I 2
s chlSab2.chr4              90518963 14 -  91010382 aaaaacaaaaaacc
i chlSab2.chr4             C 0 I 2
s colAng1.NW_012118799v1      142552 14 -    514179 aaaaccaaaaaacc
i colAng1.NW_012118799v1   C 0 I 2
s calJac3.chr2             203795045  9 + 204313951 -----aaaaaaacc
i calJac3.chr2             I 4693 I 2
s saiBol1.JH378155          15955348  9 +  16417988 -----aaaaaaacc
i saiBol1.JH378155         I 5209 I 2
e aotNan1.NW_018503740v1    25346620 4556 -  25620257 I
e otoGar3.GL873745           1839978 2744 -   2165740 I
e cebCap1.NW_016108158v1       28786 4743 +    298490 I
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I

a score=1523546.000000
s hg38.chr5_KI270793v1_alt     13521 179 +    126136 gctcagatctccttggggagatggattgaggcctccttccacctccctgctgggcccctgccagccttaaactctttctctgctgcaaacc----------------ccactgtctcagtgtattggcctgtggcccccacag---cacctgactgaacctgttggtccagtaacaCctgcagaccacacacagacat
s panTro5.chr5             181279286 179 - 181907262 actcagatctccttggggagatggattaaggcctccctccacctccctgctgggcttctgccagccttaaactctttctctgctgcaaacc----------------ccgctgtgtcagtgtattggcctgtggcccccacag---cacctgactgaacctgttggtccagtaacaCCTGCACACCACACAcagacat
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183000737 179 - 183735486 gctcagatctccttggggagatggattgaggcctccttccacctccctgctgggcttctgccagccttaaactctttctctgctgcaaacc----------------ccgctgtctcagtgtattggcctgtggcccccacag---cacctgactgaacctgttggtccagtaacaCCTGCACACCACACAcagacat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       91368 178 +    698298 gctcagatctccttggggagacggattgagg-ctccttccacctccctgctgggctcctgccagccttaaactctttctctgctgcaaacc----------------ccgctgtctcagtgtactggcctgtggcccccacag---cacctgactgaacctgttggtccagtaacaCCTGCAAACCACACAcagacat
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120515932 179 - 121039945 gctcagatctccttggggagatggattgaggcctccttccacctccctgctgggctcctgccagcattaaactccttctctgctgcaaccc----------------ccgctgtctcagtgtatcggcctgtggcccccacag---cacctgactgaacctgttggtccagtaacaCctgcagaccacacacagacat
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179469253 178 - 180051392 gctcagatctccttggggagatggattgaggcctccttccacctccctgctgggctcctgccagcattaaactctttctctgctgcaaacc----------------ctgctgtctcagtgtattggcctgtgg-ccccacag---cacctgactgaacctgttggtccagtaacaCctgcagaccacacagagacat
i rheMac8.chr6             I 2 C 0
s macFas5.chr6             181200380 178 - 181584905 gctcagatctccttggggagatggattgaggcctccttccacctccctgctgggctcctgccagcattaaactctttctctgctgcaaacc----------------ctgctgtctcagtgtattggcctgtgg-ccccacag---cacctgactgaacctgttggtccagtaacaCctgcagaccacacagagacat
i macFas5.chr6             I 2 C 0
s macNem1.NW_012012389v1      195240 178 -   1764207 gctcagatctccttggggagatggattgaggcctccttccacctccctgctgggctcctgccagcattaaactctttctctgctgcaaacc----------------ctgctgtctcagtgtattggcctgtgg-ccccacag---cacctgactgaacctgttggtccagtaacaCctgcagaccacacagagacat
i macNem1.NW_012012389v1   I 2 C 0
s cerAty1.NW_012009470v1      208977 178 -  16742782 gctcagatctccttggggagatggattgaggcctccttccaccttcctgctgggctcctgccagcattaaactctttctctgctgcaaacc----------------ctgctgtctcagtgtattggcctgtgg-cctcacag---cacctgactgaacctgttggtccagtaacaCctgcagaccacacagacacat
i cerAty1.NW_012009470v1   I 2 C 0
s chlSab2.chr4              90518979 175 -  91010382 gctcagatctcctcggggagatagattgaggcctccttccacctccctgct-ggctcctgccaacattaaa--ctttctctgctgcaaacc----------------ctgctgtctcagtgtattggcctgtgg-ccccacag---cacctgactgaacctgttggtccagtaacaCctgcagaccacacacagacat
i chlSab2.chr4             I 2 C 0
s colAng1.NW_012118799v1      142568 181 -    514179 gctcagatctcctcggggagatggattgaggcctccttccacctccctgatgagctcctgccagcattaaactctttctctgctgcaaacc----------------ctgctgtttcagtgtattggcatgtgg-ccccacagcaacacctgactgaacttgttggtccagtaacaCCTGCAAACCACACAcagacat
i colAng1.NW_012118799v1   I 2 C 0
s calJac3.chr2             203795056 187 + 204313951 gctcagatctccctggggagatggattgaggcctccttccacctccctgctgggctcctgccaggattagactgtttctctgctgcaaacc----cgccctccc---gccatgtctcggtgtattggcctgtgg-ccctgcag---cacctgactgaacctgtcggcccagtaacaCctgcagaccactcacagacat
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          15955359 194 +  16417988 gctcagatctccttggggagacggatgaaggcctccttccacctccctgctgagctcctgccaggattaaacggtttctctgctgcaaaccgccgccccctcccccaccccagtctcagtgtatttgcctgtgg-ccctgcag---cacctgattgaacctgtcggcccagtaacaCctgcagaccacacacagacat
i saiBol1.JH378155         I 2 C 0
s cebCap1.NW_016108158v1       33529 188 +    298490 gctcagatctccttggggagatgtattaaggcctccttccacctccctgctgggctcctgccaggattaaactgtttctctgctgcaaacc---acccccccac---cccatgtctcagtgtattggcctgtgg-ccctgtag---cacctgactgaacctgtcggcccagtaacaCctgcagaccacacacagacat
i cebCap1.NW_016108158v1   I 4743 C 0
s aotNan1.NW_018503740v1    25351176 189 -  25620257 gctcagatcttcctggggagatggactgaggcctccttccacctccctgctgggttcctgccaggattaaactgtttctctgctgcaaacc--ggtcccccacc---cccatgtctcagtgtattggcctgtgg-ccctgcag---cacctgactgaacctgtcggcccagtaacaCctgcagaccacacacagacat
i aotNan1.NW_018503740v1   I 4556 C 0
e otoGar3.GL873745           1839978 2744 -   2165740 I
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I

a score=3764656.000000
s hg38.chr5_KI270793v1_alt     13700 494 +    126136  
s panTro5.chr5             181279465 493 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183000916 493 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       91546 491 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120516111 491 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179469431 494 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181200558 494 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      195418 492 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      209155 501 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90519154 494 -  91010382  
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      142749 496 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203795243 494 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15955553 504 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       33717 471 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25351365 475 -  25620257  
i aotNan1.NW_018503740v1   C 0 I 20
s otoGar3.GL873745           1842722 508 -   2165740  
i otoGar3.GL873745         I 2744 C 0
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I

a score=105622.000000
s hg38.chr5_KI270793v1_alt     14194 18 +    126136 CA-GTCACGGAACCA--GTGA
s panTro5.chr5             181279958 20 - 181907262 CA-GTCACGGAACCACAGTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001409 20 - 183735486 CA-GTCACGGAACCACAGTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92037 20 +    698298 CA-GTCACGGAACCACAGTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120516602 20 - 121039945 CA-GTCACGGAACCACAGTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179469925 20 - 180051392 CA-GTCACGGTACCACAATGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201052 20 - 181584905 CA-GTCACGTTACCACAATGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      195910 20 -   1764207 CA-GTCACGGTACCACAATGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      209656 20 -  16742782 CA-GTCACGGTACCACAATGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90519648 20 -  91010382 CA-GTCACGGTACCACAATGA
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      143245 20 -    514179 CA-GTCCCGGTACCCCAATGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203795737 18 + 204313951 ---GTAACGGAACCACAACCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15956057 18 +  16417988 ---GTCACGGAACCACGACCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       34188 18 +    298490 ---GTCGCGGAACCACAACCA
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1843230 19 -   2165740 CATCTCATAAAACCCATAT--
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25351840 20 -  25620257 I
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I

a score=502628.000000
s hg38.chr5_KI270793v1_alt     14212 62 +    126136 -CCCGATAGACAGGCAGGGGCCGGGACGCCGGG-ACCCGAACGCGGGCA--GGGGCCGCACCTGGG
s panTro5.chr5             181279978 62 - 181907262 -CCCGATAGACAGGCAGGGGCCGGGACGCCGGG-ACCCGAACGCGGGCA--GGGGCCACACCTGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001429 62 - 183735486 -CCCGATAGACAggcaggggccgggacgccggg-acccgaacgcgggca--ggggccgcacctggg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92057 62 +    698298 -CCCGATAGACAGGCAGGGGCCGAGACGCCGGG-ACCCGAACGCGGGCA--GGGGCCGCACCTGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120516622 62 - 121039945 -CCCGCTAGACAGGCAGGGGCCGGGACGCGGGA-ACCCGAACGCGGGGA--GGGGCCGCACCTGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179469945 62 - 180051392 -CCCGATAGACAAGCAGGAGCCGCGACTCCGGG-ACCGGAACGCGGGCA--GGGGCCGCACCTGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201072 62 - 181584905 -CCCGATAGACAAGCAGGAGCCGCGACTCCGGG-ACCAGAACGCGGGCA--GGGGCCGCACCTGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      195930 62 -   1764207 -CCCGATAGACAAGCAGGAGCCGCGACTCCGGG-ACCGGAACGCGGGCA--GTGGCCGCACCTGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      209676 62 -  16742782 -CCCGATAGACAAGCAGGAGCCGCGACTCCGGG-ACCGGAACGCGGGCA--GGGGCCGCACCTGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90519668 61 -  91010382 -CCCGACAGACAGGCAGGAGCCGCGACTCCAGG-ACT-GAACGCGGGCA--GGGGCCGCACCTGGG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      143265 62 -    514179 -CCCGACAGACAGGCAGGAGCCGCGACTCCGGG-ACCGGAACGCGGGCA--GGGGCCGCACCTGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203795755 55 + 204313951 -CCCGACAGGCAGGCAGGAGCCG-GACTCCGGG-ACA------CGGGCA--GCGGCCGCACCTGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15956075 61 +  16417988 -CCCGACAGGCGGGCAGGAGCCG-GACCCCGGG-ACACGGACGCGGGCA--GGGGCCGCACCTGGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       34206 61 +    298490 -CCCGACAGGCAGGCAGGAGCCG-GACGCCGGG-ACACGGACGCGGGCA--GGGGCCGCACCTGGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25351860 61 -  25620257 -CCCGACAGGCGGGCAGGAGCCG-GACTCCGGG-ACACGGACGCGGGCA--GGGGCCGCACGTGGG
i aotNan1.NW_018503740v1   I 20 I 71
s otoGar3.GL873745           1843249 59 -   2165740 CCCC------TGGGTAGGTGCCA-GGCTCTGAGCACCTGGACCATGCCACCTGGGTCGCACCAGGG
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I

a score=25636.000000
s hg38.chr5_KI270793v1_alt     14274 4 +    126136 CACG
s panTro5.chr5             181280040 4 - 181907262 CACG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001491 4 - 183735486 cacg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92119 4 +    698298 CACG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120516684 4 - 121039945 CACG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470007 4 - 180051392 CACG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201134 4 - 181584905 CACG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      195992 4 -   1764207 CACG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      209738 4 -  16742782 CACG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90519729 4 -  91010382 TTCG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      143327 4 -    514179 CACG
i colAng1.NW_012118799v1   C 0 M 4115
s calJac3.chr2             203795810 4 + 204313951 CACG
i calJac3.chr2             C 0 I 21
s saiBol1.JH378155          15956136 4 +  16417988 CACG
i saiBol1.JH378155         C 0 I 21
s cebCap1.NW_016108158v1       34267 4 +    298490 CACG
i cebCap1.NW_016108158v1   C 0 I 21
s otoGar3.GL873745           1843308 1 -   2165740 --C-
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25351921 71 -  25620257 I
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I

a score=129522.000000
s hg38.chr5_KI270793v1_alt     14278 28 +    126136 GG---GGGTGGGTCGC----------TCACCTGGACACGCG
s panTro5.chr5             181280044 26 - 181907262 GG---GGGTGCG--GC----------TCACCTGGGCACGCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001495 26 - 183735486 gg---gGGTGCG--GC----------TCACCTGGGCACGCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92123 28 +    698298 GG---GGGTGGGTCGC----------TCACCTGGGCACGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120516688 28 - 121039945 GG---GGGTGGGTCGC----------TCACCTGGGCACGCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470011 28 - 180051392 AG---GGGCGGGGTCC----------TCACCTGGGCGCGCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201138 28 - 181584905 AG---GGGCGGGGTCC----------TCACCTGGGCGCGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      195996 28 -   1764207 AG---GGGCGGGGTCC----------TCACCTGGGCGCGCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      209742 28 -  16742782 AG---GGGCAGGGTCC----------TCACCTGGGCGCGCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90519733 28 -  91010382 AG---GGGCGGGGTCC----------TCACCTGGGCACGCG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203795835 31 + 204313951 GGGGAGGATGGGGTCC----------TCACCTGGGCAGGCG
i calJac3.chr2             I 21 C 0
s saiBol1.JH378155          15956161 28 +  16417988 GG---GGGTGGAGTCC----------TCACCTGGGCACGCG
i saiBol1.JH378155         I 21 M 2469
s cebCap1.NW_016108158v1       34292 27 +    298490 GG---TGG-GGGGTCC----------TCACCTGGGCGCGCG
i cebCap1.NW_016108158v1   I 21 C 0
s otoGar3.GL873745           1843309 30 -   2165740 --------TGCATCACCTGATCCACATCACCTGGAC---CG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25351921 71 -  25620257 I
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e colAng1.NW_012118799v1      143331 4115 -    514179 M

a score=355722.000000
s hg38.chr5_KI270793v1_alt     14306 71 +    126136 CGCCCCG----CTCGCCCGCGACCGTTCCGGACGCCCGCGGCGCCTGCGTAGACGGGTCCCGCCTGCCCACGGTC
s panTro5.chr5             181280070 71 - 181907262 CGCCCCG----CTCGCCCGCGACCGTTCCGGACGCCCGCGGCGCCTGCGTAGACGGGTCCCGCCTGCCCACGGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001521 71 - 183735486 CGCCCCG----CTCGCCCGCGACCGTTCCGGACGCCCGCGGCGCCTGCGTAGACGGGTCCCGCCTGCCCACGGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92151 71 +    698298 CGCCCCG----CTCGCCCGCGACCGTTCCGGACGCCCGCGGCGCCTGCGTAGACGGGTCCCGCCTGCCCACGGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120516716 70 - 121039945 CGCCCCG----CCCGCCCTCGACCGTTCCGGACGCCCGCGGCGCC-GCGCAGAGGGGTCCCGCCTGCCCTCGGTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470039 75 - 180051392 CGCCCCGCCCTCCCGCCCGAGACCGTTCCGGACGCCCGCGGCGCCTGCGCAGAGGAGCCCCACCTGCCCACGGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201166 75 - 181584905 CGCCCCGCCCTCCCGCCCGAGACCGTTCCGGACGCCCGCGGCGCCTGCGCAGAGGAGCCCCACCTGCCCACGGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196024 75 -   1764207 CGCCCCGCCCTCCCGCCCGAGACCGTTCCGGACGCTCGCGGCGCCTGCGCAGAGGAGCCCCACCTGCCCACGGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      209770 75 -  16742782 CGCCCCGCCCTCCCGCCCGAGACCGTTCCGGACGCCCGCGGCGCCTGCGCAGAGGGGCCCCACCTGCCCACGGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90519761 75 -  91010382 CGCCCCGCCCTCCCGCCCGAGACCGTTCCGGACGCCCACGGCGCCTGCGCAGAGGGGCCCCACCTGCCCACGGTC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203795866 48 + 204313951 CGCCCAG----CCCGCCAGCGACCGTTCCGGCCGCCCGCGGC-----------------------GCCCACAGTC
i calJac3.chr2             C 0 I 19
s cebCap1.NW_016108158v1       34319 70 +    298490 CGCCCCG----CCCGCCCGCGACCGTCCCGGCCGCCCGCGGCGCCTGCGCAGAGGGG-CCCGCCTGCCCGCGGTG
i cebCap1.NW_016108158v1   C 0 I 19
s otoGar3.GL873745           1843339 62 -   2165740 CACCTCT----CCGGCCCCCTTCTG--CCAGACGCC----GCGCCTGCGTAAAGG---CAGACCCGCCGCTGGTC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25351921 71 -  25620257 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e colAng1.NW_012118799v1      143331 4115 -    514179 M

a score=539127.000000
s hg38.chr5_KI270793v1_alt     14377 101 +    126136 CGCC-------------------GCCG-CCCCGGG---AAGCTCGGCACCCACC-----CCCCCGCCACCTCACGCTTGCACCCCCGCCCGCC-----CTCCGGCGCACCCAGGTCGCGGTGAGGCCCTAAGCC
s panTro5.chr5             181280141 101 - 181907262 CGCC-------------------GCCG-CCCCGGG---AAGCTCGGCACCCACC-----CCCCTGCCACCTCACGCTTGCACCCCCGCCCGCC-----CTCCGGCGCACCCAGGTCGCGGTGAGGCCCTAAGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001592 101 - 183735486 CGCC-------------------GCCG-CCCCGGG---AAGCTCGGCACCCACC-----CCCCTGCCACCTCACGCTTGCACCCCCGCCCGCC-----CTCCGGCGCACCCAGGTCGCGGTGAGGCCCTAAGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92222 101 +    698298 CGCC-------------------GCCG-CCCCGGG---AAGCTCGGCACCCACC-----CCCCCGCCACCTCACGCTTGCACCCCCGCCCGCC-----CTCCGGCGCACCCAGGTCGCGGTGAGGCCCTAAACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120516786 101 - 121039945 CGCC-------------------GCCG-CCCCGAG---AAGCTCGGCACCCACC-----CCCCGCCACCCTCACGCTTGCACCCCCGCCCGCC-----CTCCGGCGCACCCAGGTCGCGGTGAGGCCCTAGGCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470114 116 - 180051392 TGCCGCCCAGGCAACCAGGCGCGGCCG-CCCCGGG---AAGCTCGGTACCCACC-----CCCCGCCACCCTCACGCTTGCACCCCCGCCCG---------CTGGCGCACCCAGGTCGCGGTGAGGCCCTAGTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201241 116 - 181584905 TGCCGCCCAGGCAACCAGGCGCGGCCG-CCCCGGG---AAGCTCGGTACCCACC-----CCCCGCCACCCTCACGCTTGCACCCCCGCCCG---------CTGGCGCACCCAGGTCGCGGTGAGGCCCTAGTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196099 116 -   1764207 TGCCGCCCAGGCAACCAGGCGCGGCCG-CCCCGGG---AAGCTCGGTACCCACC-----CCCCGCCACCCTCACGCTTGCACCCCCGCCCG---------CTGGCGCACCCAGGTCGCGGTGAGGCCCTAGTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      209845 116 -  16742782 CGCCGCCCAGGCAACCAGGCGCGGCCG-CCCCGGG---AAGCTCGGCACCCACC-----CCCCGCCACCCTCACGCTTGCACCCCCGCCCG---------CCGGCGCACCCAGGTCGCGGTGAGGCCCTAGTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90519836 116 -  91010382 CGCCGCCCAGGCAACCAGGCGCGGCCG-CCCCGGG---AAGCTCGGCACCCACC-----CCCCGCCACCCTCACGCTTGCACCCCCGCCCG---------CCGGCGCACCCAGGTCGCGGTGTGGCCCTAGTCC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203795933  77 + 204313951 -------------------CGCGGCCG-CCCCGGG---AAGCTCG---------------------------------GCATCCCCGCCCGCC-CACCCGCCGGCGCACCCAGGTTGCGGTGAGGCCCCAGGCC
i calJac3.chr2             I 19 C 0
s cebCap1.NW_016108158v1       34408 110 +    298490 -------------------CGCGGCCG-CCCCGGG---AAGCTCGGCACCGCTCGGCATCCCCGCCACCCTCATGCTTGCACCCCTGCCCGCC-CGCCCGCCGGCACACCCAGGTTGCGGTGAGGCCCCAGGCC
i cebCap1.NW_016108158v1   I 19 C 0
s aotNan1.NW_018503740v1    25351992 110 -  25620257 -------------------CGCGGCCGACCCCGGGCAAAAGCTCGGCACCCACC-----CCCCGCCCACCTCGCGCTTGCACCCCCGCCCGCCTCGTCCGCCGGCGCACCCAGGTTGCGCTGAGGCTCCAGGCC
i aotNan1.NW_018503740v1   I 71 C 0
s otoGar3.GL873745           1843401  71 -   2165740 ---------------------AGGC---TCCTGGG---GCGCTCTATGCCCCGT-----ACCC------------------------CCTGCC-------CCGGCGCACCCAGGTCGTGGTGAGGCGCCAGGCC
i otoGar3.GL873745         C 0 C 0
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11683033 2678 +  42124431 I
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e colAng1.NW_012118799v1      143331 4115 -    514179 M

a score=561498.000000
s hg38.chr5_KI270793v1_alt     14478 71 +    126136 GCTCTTCGCCCGAACCGCCTCCTCGCTCAGCACCAGCCGAGGGCCAGCCCGCGCCATG-TTTCAAACGGAGC
s panTro5.chr5             181280242 71 - 181907262 GCTCTTCGCCCGAACCGCCTCCTCGCTCAGCACCAGCCGAGGGCCAGCCCGCGCCATG-TTTCAAACGGAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001693 71 - 183735486 GCTCTTCGCCCGAACCGCCTCCTCGCTCAGCACCAGCCGAGGGCCAGCCCGCGCCATG-TTTCAAACGGAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92323 71 +    698298 GCTCTTCGCCCGAACCGCCTCCTCGCTCAGCACCAGCCGAGGGCCAGCCCGCGCCATG-TTTCAAACGGAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120516887 71 - 121039945 GCTCTTCGCCCGAACTGCCTCCTCGCTCAGCAGCAGCCGAGGCCCAGCCCGCGCCATG-TTTCAAACGGAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470230 71 - 180051392 GCTCTTCGCCCGGACCGCCTCCTCGCTCAGCACCAGCCGCGGACCAGCCCGCGCCATG-TTTCAAACGAAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201357 71 - 181584905 GCTCTTCGCCCGGACCGCCTCCTCGCTCAGCACCAGCCGCGGCCCAGCCCGCGCCATG-TTTCAAACGAAGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196215 71 -   1764207 GCTCTTCGCCCGGACCGCCTCCTCGCTCAGCACCAGCCGCGGACCAGCCCGCGCCATG-TTTCAAACGAAGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      209961 71 -  16742782 GCTCTTCGCCCGGACCGCTTCCTCGCTCAGCACCAGCCGCGGACCAGCCCGCGCCATG-TTTCAAACGGAGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90519952 71 -  91010382 GCTCTTCGCCCGGACCGCCTCCTCGCTCAGCACCAGCCGCGGACCAGCCCGCGCCATG-TTTCAAACGGAGC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203796010 71 + 204313951 GCTCTTCGACCGGATCACTTCTTCACTCAGCTCCAGCCGCGGGACAGCCGGCGCCATG-TTTCAAACGGAGC
i calJac3.chr2             C 0 I 1
s cebCap1.NW_016108158v1       34518 71 +    298490 GCTCTTCGACCGGATCGCTTCCTCACTCAGCACCAGCCGCGGGACAGCCCGCGCCATG-TTTCAAACGGAGC
i cebCap1.NW_016108158v1   C 0 I 642
s aotNan1.NW_018503740v1    25352102 71 -  25620257 GCTCTTCCACCGGATCGCTTCCTCACTCAGCACCAGCCACGGGGCAGCCCGCGCCATG-TTTCAAACGGAGC
i aotNan1.NW_018503740v1   C 0 I 1
s otoGar3.GL873745           1843472 72 -   2165740 GCTCTTTGCCCGGACCGTCTCCTCGCTAAGCACCAGTCTCAGGCCCGCTGGCGCCATGTTTTCAAACGGGAG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11685711 71 +  42124431 GCTCTTCTCCCGGATCTTCTCCTCGA-CACCTTTAGCCACGGGCCCGCAGGCGCCATACTTTCAAACGGCAC
i canFam3.chr34            I 2678 I 3
e saiBol1.JH378155          15956189 2469 +  16417988 M
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e colAng1.NW_012118799v1      143331 4115 -    514179 M

a score=129892.000000
s hg38.chr5_KI270793v1_alt     14549 20 +    126136 CCTCG-GACG--GCGCCTgcgcg
s panTro5.chr5             181280313 20 - 181907262 CCTCG-GACG--GCGCCTGCGCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001764 20 - 183735486 CCTCG-GACG--GCGCCTGCGCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92394 20 +    698298 CCTCG-GACG--GCGCCTGCGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120516958 20 - 121039945 CCTCG-GACG--GCGCCTgcgcg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470301 20 - 180051392 CCTCG-GACG--GCGCCTGCGCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201428 20 - 181584905 CCTCG-GACG--GCGCCTGCGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196286 20 -   1764207 CCTCG-GACG--GCGCCTGCGCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210032 20 -  16742782 CCTCG-GACG--GCGCCTGCGCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520023 20 -  91010382 CCTCG-GACG--GCGCCTGCGCG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203796082 20 + 204313951 -CTCACCACA--GCGCCTgcgcg
i calJac3.chr2             I 1 C 0
s aotNan1.NW_018503740v1    25352174 20 -  25620257 -CTCACCACG--GCGCCTgcgcg
i aotNan1.NW_018503740v1   I 1 I 14659
s otoGar3.GL873745           1843544 22 -   2165740 GCTCG-CACAGTGCGCCTGCGCA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11685785 20 +  42124431 CCTGC-GCCC--GCGCCTGCGCA
i canFam3.chr34            I 3 C 0
e cebCap1.NW_016108158v1       34589 642 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e colAng1.NW_012118799v1      143331 4115 -    514179 M

a score=350726.000000
s hg38.chr5_KI270793v1_alt     14569 107 +    126136 gc-gggcgggg------------------c----gaggctacgagaggggcgggacctgcgtcggcagaaccgaga--------------------gcctggc-gggacggggcggggcctgcgcggcggggcgaggggcgtggctggggg
s panTro5.chr5             181280333 107 - 181907262 GC-GGGCGGGG------------------C----GAGGCTAAGAGAGGGGCGGGACCTGCGTCGGCAGAACTAAGA--------------------GCCTggc-gggacggggcggggcctgcgcggcgtggcgaggggcgcggctggggg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001784 107 - 183735486 GC-GGGCGGGG------------------C----GAGGCTAAGAGAGGGGCGGGACCTGCGTCGGCAGAACTAAGA--------------------GCCTggc-gggacggggcggggcctgcgcggcgtggcgaggggcgtggctggggg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92414 126 +    698298 GC-GGGCGGGC------------------C----GAGGCTAAGAGAGGGGCGGGACCTGCGTCGGCGGAACCAAGAGCCTggcgggacggggcggggcctggc-gggacggggcggggcctgcgcggcggggcgaggggcgtggctgggg-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120516978  65 - 121039945 gc-gggcggga------------------c----gaggctaagaga---------------------------------------------------------------ggggcggggcctgcgcggcggggcggggagcgtggcgggggg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470321 107 - 180051392 GC-GGGCGGGG------------------C----AAGGCTAAGAGAGGGGCGGGACCTGCGTGGGCAGAACCAAGA--------------------GTCTGGC-GGGACGGGGCGGGGCCTGCGCGGCGGGGCGGGGAGAGGGGCCGGGCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201448 107 - 181584905 GC-GGGCGGGG------------------C----AAGGCTAAGAGAGGGGCGGGACCTGCGTGGGCAGAACCAAGA--------------------GTCTGGC-GGGACGGGGCGGGGCCTGCGCGGCGGGGCGGGGAGAGGGGCCGGGCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196306 107 -   1764207 GC-GGGCGGGG------------------C----AAGGCTAAGAGAGGGGCGGGACCTGCGTGGGCAAAACCAAGA--------------------GTCTGGC-GGGACGGGGCGGGGCCTGCGCGGCGGGGCGGGGAGAGGGGCCGGGCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210052 107 -  16742782 GC-GGGCGGGG------------------C----AAGGCTAAGAGAGGGGCGGGACCTGCGCGGGCAGAACCAAGA--------------------GTCTGGC-GGGACGGGGCGGGGCCTGCGCGGCGGGGCGGGGAGAGGGGCCGGGAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520043 107 -  91010382 GC-GGGCGGGG------------------C----AAGGCTAAGAGAGGGGCGGGACCTGCGTGGGCAGAACCAAGA--------------------GTCTggc-gggacggggcggggcctgcgcggcggggcggggAGAGACGCCCCGAT
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203796102 120 + 204313951 gcggggcggggtggagcctgcacgacggcc----ggggcggggag-ggggcggggcctgcgc-agtggacccaaga--------------------gcccggc-gagacggggcgtgccctgcgctgcggg----ggggcggggcctacgg
i calJac3.chr2             C 0 I 1
s otoGar3.GL873745           1843566  59 -   2165740 ------CTGAG------------------C----AAGGC-----------------CCAAGTGGGCGCAGCCAAGT--------------------GCCGGGCGGGGGTGAGCCCGGGCTTGCC---------------------------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11685805  86 +  42124431 -----GTGGGG------------------CCGCGGGGGATCCGCGAggggcggggccgg-gtcgggagtgggcggg--------------------gccgggc-g----ggggcggggccgg---ggccgggcggggg-------------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1       34589 642 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e manLeu1.NW_012110441v1       97500 11177 -    438239 I
e colAng1.NW_012118799v1      143331 4115 -    514179 M

a score=8523.000000
s hg38.chr5_KI270793v1_alt     14676 2 +    126136 ag
s panTro5.chr5             181280440 2 - 181907262 ag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001891 2 - 183735486 ag
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92540 1 +    698298 -a
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517043 2 - 121039945 ag
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470428 2 - 180051392 AG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201555 2 - 181584905 AG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196413 2 -   1764207 AG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210159 2 -  16742782 AG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520150 2 -  91010382 AG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      108677 2 -    438239 AG
i manLeu1.NW_012110441v1   I 11177 C 0
s calJac3.chr2             203796223 1 + 204313951 -g
i calJac3.chr2             I 1 I 1
s canFam3.chr34             11685891 2 +  42124431 cg
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1843625 0 -   2165740 C
e cebCap1.NW_016108158v1       34589 642 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e colAng1.NW_012118799v1      143331 4115 -    514179 M

a score=231234.000000
s hg38.chr5_KI270793v1_alt     14678 48 +    126136 ggggc--gggac-tgcgtgggcggAACCAAGAG---CCTGGC--GGGGG-GTTCTCC
s panTro5.chr5             181280442 48 - 181907262 ggggc--gggacctgcgtgggcggAACCAAGAG---CCTGGC--GGGGG-GT-CTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001893 48 - 183735486 ggggc--gggacctgcgtgggcggAACCAAGAG---CCTGGC--GGGGG-GT-CTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92541 48 +    698298 ggggc--gggacctgcgtgggcggAACCAAGAG---CCTGGC--GGGGG-GT-CTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517045 49 - 121039945 ggggc--ggggcctgcgtgggcggAACCAAGAG---CCTGGC--GGGGGTGT-CTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470430 50 - 180051392 GGGGCGGGGGACCT-CGT-GGCGGACCCAAGAG---CCTGGCCGGAGGG-GC-CTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201557 50 - 181584905 GGGGC--GGGACCTGCGTGGGCGGAACCAAGAG---CCTGGCCGGGAGG-GG-CTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196415 50 -   1764207 GGGGC--GGGACCTGCGTGGGCGGAACCAAGAG---CCTGGCCGGGAGG-GG-CTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210161 50 -  16742782 GGGGC--GGGACCTGCGTGGGCGGAACCAAGAG---CGTGGCCGGGGGG-GT-CTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520152 50 -  91010382 GGGGC--GGGACCTGCGTGGGCGGAACCAAGAG---CCTGGCCGAGGGG-GT-CTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      108679 50 -    438239 GGGGC--GGGACCTGCGTGGGCGGAACCAAGAG---CCTGGCCGGGGGG-GT-CTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      147469 48 -    514179 GGGGC--GGGACCTGCGTGGGCGGAACCGAGAG---CCTGGCCGG--GG-GT-CTCC
i colAng1.NW_012118799v1   M 4115 C 0
s calJac3.chr2             203796225 53 + 204313951 ggggc--ggggcCTGTGCGGACGGAACCCAGAGGATCCTGAGTGGGTAG-TT-CACC
i calJac3.chr2             I 1 I 440
s otoGar3.GL873745           1843625 28 -   2165740 --------------------GCAACACCAGCAG---CCTA----GGAGG-CT-ATCC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11685893 22 +  42124431 ggggc--ggggC-----------GAGCCGTCGC---CC-------------------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1       34589 642 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M

a score=430304.000000
s hg38.chr5_KI270793v1_alt     14726  90 +    126136 TGAATGGCGGTTCTCCCAGGTACT---GG-CCACGC--------GACCCCAGCCCCCGCCCCAGATAGCTCCCTGTCAAGGCTTCCC---TGGGCGCG--GCCGCCT
s panTro5.chr5             181280490  90 - 181907262 TGAATGGCGGTTCTCCCAGGTACT---GG-CCACGC--------GACCCCAGCCCCCGCCCAAGATAGCTCCCTGTCAAGGCTTCCC---TGGGCGCG--GCCGCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183001941  90 - 183735486 TGAATGGCGGTTCTCCCAGGTACT---GG-CCACGC--------GACCCCAGCCCCCGCCCCAGATAGCTCCCTGTCAAGGCTTCCC---TGGGCGCG--GCCGCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92589  90 +    698298 TGAATGGCGGTTCTCCCAGGTACT---GG-CCACGC--------GACCCCAGCCCCCGCCCCAGATAGCTCCCTGTCAAGGCTTCCC---TGGGCGCG--GCCGCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517094  90 - 121039945 TGAATGGCGGTTCTCCCAGGTACT---GG-CCACGC--------GACCCCAGCCCCCGCCCCAGATAGCGCCCTGTCAAGGCATCAC---TGGGCGCA--GCCGCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470480  94 - 180051392 TGAATGGCGGTTCTCCCAGGCACTT--GGCCTCCGC--------CCACCCAGCCCCCGCCCCAGATAGCGCCCCGTCTAGGCTTCCT---GGGACGCTTGGCCGCCT
i rheMac8.chr6             C 0 I 27
s macFas5.chr6             181201607  91 - 181584905 TGAATGGCGGTTCTCCCAGGCACTT--GG-CTCCGC--------CACCCCAGCCCCCGCCCCAGATAGCGCCGCGTCTAGGCTTCCC---TGGGCGCT--GCCGCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196465  91 -   1764207 TGAATGGCGGTTCTCCCAGGCACTT--GG-CTCCGC--------CACACCAGCCCCCGCCCCAGATAGCGCCCCGTCTAGGCTTCCC---TGGGCGCT--GCCGCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210211  91 -  16742782 TGCATGGCGGTTCTCCCAGGTACTA--GG-CTCCGC--------CACCCCAGCCCCCGCCCCAGATAGCGCCCCGTCTAGGCTTCAC---TGGGCGCG--GCCGCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520202  91 -  91010382 TGAATGGCGGTTCTCCTAGGCGCTT--GG-CTCCGC--------CACCCCAGCCCCCGCCCCAGATAGCGCCCCGTCTAGGCTTCCC---TGGGCGCG--GCCGCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      108729  91 -    438239 TGCATGGCGGTTCTCCCAGGCACTA--GG-CTCCGC--------CACCCCGGCCCCCGCCCCAGATAGCGCCCCGTCTAGGCTTCAC---TGGGCGCG--GCCGCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      147517  90 -    514179 TGAGTGGCGGTTCTCACAGGCACT---GG-CTCCGC--------CACCCCAGTCCCCGCCCCAGATAGCGCCCCGTCTAGGCGTCCC---TGGGCGTG--GCCGCCT
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1843653 100 -   2165740 ----TGAGGGGGCTTCTTGATGCCTCCGC-CCACGCAGTGCCCAGACCCCGGTGCCTGGCCAAGAAAGTGCCTTCCCAAGAAAGCCCAAGTGGGCGCC--CGTGCCC
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11685915  26 +  42124431 ------GCGGGCCTACCA---------GG-CT-CGC--------------------------AGGGAGC--------------------------------------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1       34589 642 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796278 440 + 204313951 I

a score=100135.000000
s hg38.chr5_KI270793v1_alt     14816 23 +    126136 TCTAGGCCCCGGCCCTTGACACA
s panTro5.chr5             181280580 23 - 181907262 TCTAGGCCCGGGCCCTTGACACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002031 23 - 183735486 TCTAGGCCCGGGCCCTTGACACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92679 23 +    698298 TCTAGGCCCGGGCCCTTGACACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517184 23 - 121039945 TCTAGGCCCGGGTCCTTGACACA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181201698 23 - 181584905 TCTAGGCCCGGGTCCTTGACACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196556 23 -   1764207 TCTAGGCCCGGGTCCTTGACACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210302 23 -  16742782 TCTAGGCCCGGGTCCTTGACACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520293 23 -  91010382 TCTAGGCCCGGGTCCTTGACACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      108820 23 -    438239 TCTAGGCCCGGGTCCTTGACACA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      147607 22 -    514179 TCTAGGCCCGGGTCCTTGACAC-
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1843754 19 -   2165740 TGAGGACCCCCACCCCTCC----
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11685941 15 +  42124431 --------CCTGCCCTCAGGGGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1       34589 642 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796278 440 + 204313951 I
e rheMac8.chr6             179470574 27 - 180051392 I

a score=163828.000000
s hg38.chr5_KI270793v1_alt     14839 26 +    126136 CGCGGTG----TCCTCCC-GGGGAAACCCCG
s panTro5.chr5             181280603 26 - 181907262 CGCCGTG----TCCTCCC-GGGGAAACCCCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002054 26 - 183735486 CGCCGTG----TCCTCCC-GGGGAAACCCCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92702 26 +    698298 CGCCGTG----TCCTCCC-GGGGAAACCCCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517207 26 - 121039945 CGCCGTG----TCCTCCC-GGGGAAACCCCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470601 27 - 180051392 CCCGGTT----CCCTCCCGGGGGAAAGCCCG
i rheMac8.chr6             I 27 C 0
s macFas5.chr6             181201721 26 - 181584905 CGCCGTG----TCCTCCC-GGGGAAAGCCCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196579 26 -   1764207 CGCCGTG----TCCTCCC-GGGGAAAGCCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210325 26 -  16742782 CGCCGTG----TCCTCCC-GGGGAAAGCCCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520316 26 -  91010382 CGCCGTG----TCCTCCC-GGGGAAAGCCCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      108843 26 -    438239 CGCCGTG----TCCTCCC-GGGGAAAGCCCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      147629 25 -    514179 -GCCGTG----TCCTCCC-GGGGAAAGCCCG
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1843773 23 -   2165740 ---TGTGGACTTGTTCCC-AGG----CCCCG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11685956 26 +  42124431 CGCGGGG----CCCTCCC-GGGGAAAGCCCG
i canFam3.chr34            C 0 I 2001
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1       34589 642 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796278 440 + 204313951 I

a score=1501188.000000
s hg38.chr5_KI270793v1_alt     14865 270 +    126136 AGTAGGCGCGGTGGAATCGCGGCTGGTGGTGGGCATGGGGACCCTGCCCCATCC---ACACTCCGCTCCCACCCTGAACCCAGCGCCCCCGGGGACCCCCGACTCACCT----------------AGACTCCCCAC---CCAACCCGA-CCCCCCCGCGGGGACCCCTCCAGACACCCCAGCACCCGCCCGGAGCCTTGTCTGCTGCACCTCCCGTCCAGCCCCGGGCCTCCCAGAGGTGGGCGGGAGCTGAGCTTCTCCCCAGCCAGTCACTCCCCACGGCCGGTCCTTCTC---
s panTro5.chr5             181280629 269 - 181907262 AGTAGGCGCGGTGGAATCGCGGCTGGTGGTGGGCGTGGGGACCCTGCCCCGTCC---ACACTCCGCTCCCACCCTGAACCCAGCGCCCCCGGGGACCCCCGACTCACCT----------------AGACTCCCC-C---CGAACCCGA-CCCCCACGCGGGGACCCCTCCAGACCCCCCAGCACCCGCCCGGAGCCTTGTCTGCTGCACCTCCCGTCCAGCCCCGGGCTTCCCAGAGGTGGGCGGGAGCTGAGCTTCTCCCCAGCCAGTCACTCCCCACGGCCGGTCCTTCTC---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002080 269 - 183735486 AGTAGGCGCGGTGGAATCGCGGCTGGTGGTGGGCGTGGGgaccctgccccgtcc---acactccgctcccaccctgaacccggcgcccccggggacccccgactcacct----------------agactcccc-c---cgaacccga-cccccacGCGGGGACCCCTCCAGACCCCCCAGCACCCGCCCGGAGCCTTGTCTGCTGCACCTCCCGTCCAGCCCCGGGCTTCCCAGAGGTGGGCGGGAGCTGAGCTTCTCCCCAGCCAGTCACTCCCCACGGCCGGTCCTTCTC---
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       92728 272 +    698298 AGTAGGCGCGGTGGAATCGCGGCTGGTGGTGGGCGTGGGGACCCTGCCCCATCC---ACACTCCGCTCCCACCCTGAACCCAGCGCCCCCGGGGACCCCCGACTCACCT----------------AGACTCCCC-CCCACCAACCCGA-CCCCCACGCGGGGACCCCTCCAGACCCCCCAGCACCCGCCCGGAGCCTTGTCTGCTGCACCTCCCGTCCAGCCCCGGGCCTCCCAGAGGTGGGCGGGAGCTGAGCTTCTCCCCAGCCAGTCACTCCCCACGGCCGGTCCTTCTC---
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517233 270 - 121039945 AGTAGGCGCGGTGGAATCGCGGCTGGTGGTGGGCGTGGGGACCCTGCCCCATCC---ACACTCCGCTCCCACCCTGAACCCAGCGCCCCCGGGGACCCCCGACTCACCT----------------AGACACCCCCC---CCGACCCGA-CCCCCACGCGGGTGCCCCTCCAGAACCCCCAGCACCCGCCCGGAGCCTTGTCTGCTGCGCCTCCCGTCCAGCCCCGGGCCTCCCAGAGGTGGGCGGGAGCTGAGCTTCTCCCCAGCCAGTGACTCCCCACGGCCGGTCCTTCTC---
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470628 267 - 180051392 AGTAGGCGCGGTGGAATCGCGGCTGCTGGTGCGCATGGGGACCCTTCCCCATTC---ACACTCCGCTCCCACCCTGAACCCCGCG-CCCCGGGGATCCCCGACTCTCTT----------------AGACTCCCCGC---C--ACCCGA-CCCCCACGCAGGGACCCCTCCAGACCCCCCAGTACCCGCCCGGGGCCTTGTCTGCTGCACCTCCCGTCCAGCCCCGGGCCTCGCAGAGGTGGGCGGCAGCTGAGCTGCTCCACAGCCAGTCACTCCCCACAACCGGTCTTTCTG---
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181201747 267 - 181584905 AGTAGGCGCGGTGGAATCGCGGCTGCTGGTGCGCATGGGGACCCTTCCCCATTC---ACACTCCGCTCCCACCCTGAACCCCGCG-CCCCGGGGATCCCCGACTCTCTT----------------AGACTCCCCGC---C--ACCCGA-CCCCCACGCAGGGACCCCTCCAGACCCCCCAGTACCCGCCCGGGGCCTTGTCTGCTGCACCTCCCGTCCAGCCCCGGGCCTCGCAGAGGTGGGCGGGAGCTGAGCTGCTCCCCAGCCAGTCACTCCCCACAGCCGGTCTTTCTC---
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196605 267 -   1764207 AGTAGGCGCGGTGGAATCGCGGCTGCTGGTGCGCATGGGGACCCTTCCCCATTC---ACACTCCGCTCCCACCCTGAACCCCGCG-CCCCGGGGATCCCCGACTCTCTT----------------AGACTCCCCGC---C--ACCCGA-CCCCCACGCAGGGACCCCTCCAGACCCCCCAGTACCCGCCCGGGGCCTTGTCTGCTGCACCTCCCGTCCAGCCCCGGGCCTCGCAGAGGTGGGCGGGAGCTGAGCTGCTCCCCAGCCAGTCACTCCCCACAGCCGGTCTTTCTC---
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210351 267 -  16742782 AGTAGGCGCGGTGGAATCGCGGCTGCTGGTGCGCGTGGGGACCCTTCCCCATCC---ACACTCCGCTCCCACCCTGAACCCCGCG-CCCCGGGGATCCCCGACTCTCCT----------------AGACTCCCCGC---C--ACCCGA-CCCCCACGCGGGGACCCCTCCAGACCCCCCAGTACCCGCCCGGGGCCTTGTCTGCTGCACCTCCCGTCCAGCCCCGGGCCTCGCAGAGGTGGGCGGGAGCTGAGCTGCTCCCCAGCCAGTCACTCCCCACAGCCGGTCTTTCTC---
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520342 268 -  91010382 AGTAGGCGCGGTGGAATCGCGGCCGCTGGTGCGCGTGGGGACCCTTCCCCATTC---ACACTCCGCTCCCACCCTGAACCCCGCG-CCCCGGGGATCCCTGACTCTCCT----------------AGACTCCCCGC---C--ACCCGACCCCCCACGCGGAGACCCCTCCAGACCCCCCAGTACCCGTCCGGGGCCTTGTCTCCTGCACCTCCCGTCCAGCCCCGGGCCTCCCAGAGGTGGGCGGGAGCTGAGCTTCTCCCCAGCCAGTCACTCCCCACAGCCGGTCCTTCTC---
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      108869 267 -    438239 AGTAGGCGCGGTGGAATCGCGGCTGCTGGTGCGCGTGGGGACCCTTCCCCATCC---ACACTCCGCTCCCACCCTGAACCCCGCG-CCCCGGGGATCCCCGACTCTCCT----------------AGACTCCCCGC---C--ACCCGA-CCCCCACGCAGGGACCCCTCCAGACCCCTCAGTACCCGCCCGGGGCCTTGTCTGCTGCACCTCCCGTCCAGCCCCGGGCCTCGCAGAGGTGGGCGGGAGCTGAGCTGCTCCCCAGCCAGTCACTCCCCACAGCCGGTCTTTCTC---
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      147654 266 -    514179 AGTAGGTGCGGTGGAATCGCGGCTGCTGGTGCGCGTGGGGACCCTTCCCCATTG---ACACTCCGCTCCCACCCTGAACCCCGCG-CCCCGGGGATCCCCGACTCTCCT----------------AGACTCCCCGC---C--ACCCGA-CCCCCACGCGGGGACCCCTCCAGGCCCCCCAGTACCCGTCCGGGGCC-TGTCTGCTGCACCTCCTGTCCAGCCCCGGGCCTCCCAGAGGTGGGCGGGAGCTGAACTTCTCCCCAGCCAGTCACTCCCCACTGCCGGTCCTTCTC---
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1843796 245 -   2165740 GAC---CCCAGTGATCTCTCT--------------------CCCCTCCCGCTCCCAGAGACCCCACCCCCACCCAAAAGCCGGC--TTCCTGAGACCTCTGTCCCCCTTCCTTCTTGTCCCTTGGAGACCCCCC-C---A--ATCTGG-TCCACCTT------CCCTTCCTGTCCCTC-----CCCCCCCCATACCCTATCTATGCCTCCTCAC--CCTGCCCTGGGGGTCCC---GCCCTCTGGGGATTACGCCCCCTCTTCTCTAG-CACCCCCAGC--CCAGTACCTCTGGTT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1       34589 642 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796278 440 + 204313951 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=161428.000000
s hg38.chr5_KI270793v1_alt     15135 24 +    126136 CACCCCAGAACCTCCAGAGATGTC
s panTro5.chr5             181280898 24 - 181907262 CACCCCAGAACCTCCAGAGATGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002349 24 - 183735486 CACCCCAGAACCTCCAGAGATGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93000 24 +    698298 CACCCCAGAACCTCCAGAGATGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517503 24 - 121039945 CACCCCAGAACCTCCAGAGATGTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470895 24 - 180051392 CACCCCAGAACCTCCAGAGATGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181202014 24 - 181584905 CACCCCAGAACCTCCAGAGATGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196872 24 -   1764207 CACCCCAGAACCTCCAGAGATGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210618 24 -  16742782 CACCCCAGAACCTCCAGAGATGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520610 24 -  91010382 CACCCCAGAACCTCCAGAGATGTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      109136 24 -    438239 CACCCCAGAACCTCCAGAGATGTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      147920 24 -    514179 CACCCCAGAACCTCCAGAGATGTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                517348 11 - 204313951 CACCCCAGAAC-------------
i calJac3.chr2             T 12897 C 0
s otoGar3.GL873745           1844041 21 -   2165740 CTAACCAGGACCTC---AGATGTG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1       34589 642 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=228427.000000
s hg38.chr5_KI270793v1_alt     15159 31 +    126136 -----------------ACAGGCCCAGCACTGTGGCTCGTGGCTGACC
s panTro5.chr5             181280922 31 - 181907262 -----------------ACAGGCCCAGCACTGTGGCTCGTGGCTGACC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002373 31 - 183735486 -----------------ACAGGCCCAGCACTGTGGCTCGTGGCTGACC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93024 31 +    698298 -----------------ACAGGCCCAGCACTGTGGCTCGTGGCCGACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517527 31 - 121039945 -----------------ACAGGCCCAGCACTGTGGCTCATGGCTGACG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470919 31 - 180051392 -----------------ACCGGCCCAGCGTTGTGGCTCATGGCTGACC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181202038 31 - 181584905 -----------------ACCGGCCCAGCGTTGTGGCTCATGGCTGACC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196896 31 -   1764207 -----------------ACCGGCCCAGCGTTGTGGCTCATGGCTGACC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210642 31 -  16742782 -----------------ACCGGCCCAGCGCTGTGGCTCATGGCTGACC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520634 31 -  91010382 -----------------ACCGGCCCAGCACTGTGGCTCGTGGCTGACC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      109160 31 -    438239 -----------------ACCGGCCCAGCGCTGTGGCTCACGGCTGACC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      147944 31 -    514179 -----------------ACCGTCCCAGCACTGTGGCTCATGGCTGACC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                517359 29 - 204313951 -------------------AGGCCCAGCACTGTGGCTCATGGCTGACC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      263261 31 -    298490 -----------------ACAGGCCCAGCACCGTGGCTCATGGCTGACG
i cebCap1.NW_016108158v1   n 642 C 0
s otoGar3.GL873745           1844062 46 -   2165740 AGGTCTGAGCTTTCTCTCTCAGCCCATCAT--TGGCCAGTGGCCGTCC
i otoGar3.GL873745         C 0 I 66
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=933284.000000
s hg38.chr5_KI270793v1_alt     15190 119 +    126136 GCGCCCTGGAGGGTCTCGCTGTGTTTATCCTTGTGAGGTCCTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTTATTGGGAAGACTTTAATCCTGCTCAAGACATCTACTGT
s panTro5.chr5             181280953 119 - 181907262 GCGCCCTGGAGGGTCTCGCTGTGTTTATCCCTGTGAGGTCCTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTTATTGGGAAGACTTTAGTCCTGCCCAAGACATCTACTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002404 119 - 183735486 GCGCCCTGGAGGGTCTCGCTGTGTTTATCCCTGTGAGGTCCTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTTATTGGGAAGACTTTAGTCCTGCCCAAGACATCTACTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93055 119 +    698298 GCGTCCTGGAGGGTCTCGCTGTGTTTATCCCTGTGAGGTCCTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTTATTGGGAAGACTTTAATCCTTCCCAAGACATCTACTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517558 119 - 121039945 GCGCCCTGGAGGGTCCCCCTGTGTTTATCCCAGTGAGGTCCTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTTATTGGGAAGACTTTAATCCCGCTCAAGACACCTGCTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179470950 119 - 180051392 GCGCCCTGGAGGGTCTCCCTGTGTTTATCCCTGTGAGGTCCTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTCATTGGGAAGACTTTAATCCCGCTCAGGACATCTACTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181202069 119 - 181584905 GCGCCCTGGAGGGCCTCCCTGTGTTTATCCCTGTGAGGTCCTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTCATTGGGAAGACTTTAATCCCGCTCAGGACATCTACTGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      196927 119 -   1764207 GCGCCCTGGAGGGTCTCCCTGTGTTTATCCCTGTGAGGTCCTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTCATTGGGAAGACTTTAATCCCGCTCAGGACATCTACTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210673 119 -  16742782 GCGCCCTGGAGGGTCTCCCCGTGTTTATCCCTGTGAGGTCCTTCTGCAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTCATTGGGAAGACTTTAATCCCGCTCAGGACATCTACTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520665 119 -  91010382 GCGCCCTGGAGGGTCTCCCTGTGTTTATCCCTGTGAGATCTTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTCATTGGGAAGACTTTAATCCCGCTCAGGACATCTACTGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      109191 119 -    438239 GCGCCCTGGAGGGTCTCCCTGGGTTTATCCCTGTGAGGTCCTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTCATTGGGAAGACTTTAATCCCGCTCAGGACATCTACTGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      147975 119 -    514179 GCGCCCTGGAGGGTCTCCCTGTGTTTATCCCTGTGAGGTCCTTCTACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTCTTCATTGGGAAGACTTTAATCCCGCTCAGGACATCTACTGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                517388 118 - 204313951 GCGCCCTGGAGGGTCTCCCTGCGTTTA-CCCTGTGAGGTCCTTCCACAGAGCTTTCAAGGAAGACAGAGTTCAGCCTGTTGAGCGGGAAGACTTCAGTCCCGCTCAGGACATCCACTGT
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      263292 118 -    298490 GCGCCCTGGAGGGTCTCCCTGCGTTTA-CCCTGTGAGGTCCTTCCACAGAGCTTTCAGGGAAGACAGAGTTCAGCCTGTTGAGCGGGAAGACTTCAATCCCGCTCAGGACATGCACTGT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844108  66 -   2165740 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=1154209.000000
s hg38.chr5_KI270793v1_alt     15309 150 +    126136 GTCACCGTACCACTGTGGCCCAGCGCC----TGGTGGAGTGAATCCAGACCCCCAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTA-GGGGCACCCAGAAACCCTCACCCCAGATTAGACCAGCTCGTTGGCAACATCCCTGGTATGTCAC
s panTro5.chr5             181281072 150 - 181907262 GTCACCGTACCACTGTGGCCCAGCGCC----TGGTGGAGTGAGTCCAGAGCCCCAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTA-GGGGCACCCAGAAACCCTCACCCCAGATTAGACCAGCTCGTTGGCAACGTCCCTGGTATGTCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002523 150 - 183735486 GTCACCGTACCACTGTGGCCCAGCGCC----TGGTGGAGTGAGTCCAGAGCCCCAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTA-GGGGCACCCAGAAACCCTCACCCCAGATTAGACCAGCTCATTGGCAACGTCCCTGGTATGTCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93174 150 +    698298 GTCACCGTACCACTGTGGCCCAGCGCC----TGGTGGAGTGAGTCCAGAGCCCCAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTA-GGGGCACCCAGAAACCCTCACCCCAGATTAGACCAGCTCGTTGGCAACGTCCCTGGTATGTCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517677 150 - 121039945 GTCACCGTACTACTGTGGCCCAGCGCC----TGGTGGAGTGAGTGCAGAGCCCCAGGGGTGTCTCCTCCCGGCCTTTCTCCTGGTGTCTA-GGGGTACCCAGAAACCCTCACCCCAGATTAGACCAGCTCGTTGGCAACGTCCCTGGTATGTCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179471069 151 - 180051392 GTCACTGTACCACTGTGACCCAGCGCC----TCATGGAGTGAGTCCAAAGCCCTAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTAGGGGGCACCCAGAAACCCTCACCTCAGATTAGACCAGCTCGTTGGCAACGTCCCTGGTATTTCAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181202188 151 - 181584905 GTCACTGTACCACTGTGACCCAGCGCC----TCATGGAGTGAGTCCAAAGCCCTAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTAGGGGGCACCCAGAAACCCTTACCTCAGATTAGACCAGCTCGTTGGCAACGTCCCTGGTATTTCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      197046 151 -   1764207 GTCACTGTACCACTGTGACCCAGCGCC----TCATGGAGTGAGTCCAAAGCCCTAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTAGGGGGCACCCAGAAACCCTCACCTCAGATTAGACCAGCTCGTTGGCAACGTCCCTGGTATTTCAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210792 151 -  16742782 GTCACTGTACCACTGTGACCCAGCGCC----TCGTGGAGTGAGTCCAAAGCCCTAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTAGGGGGCACCCAGAAACCCTCACCTCAGATTAGACCAGCTCGTTGGCAACGTCCCTGGTATTTCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520784 151 -  91010382 GTCACTGTACCACTGTGACCCAGCGCC----TCGTGGAGTGAGTCCAAAGCCCTAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTAGGGGGCACCCAGAAACCCTCACCTCAGATTAGACCAGCTCGTTGGCGACGTCCCTGGTATTTCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      109310 151 -    438239 GTCACTGTACCACTGTGACCCAGCGCC----TCGTGGAGTGAGTCCAAAGCCCTAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTAGGGGGCACCCAGAAACCCTCACCTCAGATTAGACCAGCTCGTTGGCAACGTCCCTGGTATTTCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      148094 151 -    514179 GTCACAGTACCACTGTGGCCCAGCGCC----TCATGGAGTGAGTCCAAAGCCGTAGGGGTGTCCCCTCCCCGCCTTTCTCCTGGTGTCTAGGGGGCACCCAGAAACCCTCACCTCAGATTAGACTAGCTCGTTGGCAACGTCCCTGGTATTTCAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                517506 150 - 204313951 GTCACTGTGTCACTGTGGCCCAGCACC----TGGTGGACCGTGCCTAGAGCCCCAGGAGTCTCCCCTCCTCACCTTCCTCCTGGTGACTA-GGGGCACCCAGATACCATAACTGCAGATTAGACCAGCTCGCTGACAACGTCCCTGGTATGTCAC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      263410 150 -    298490 GTCACTGTGTCACTGTGGCCCAGCACC----TGGTGGACCCAGCCCAGAGCCCCAGGGGTGTCCCCTCCCCACCTTCCTCCTGGTGACTA-GGGGCACCCAGATACCATCACTGCAGATTAGACCAGCTCGCTGGCAACGTCCCTGGTATGTCAC
i cebCap1.NW_016108158v1   C 0 n 0
s otoGar3.GL873745           1844174 117 -   2165740 GTCCCTGACCAGCTTTGGGCAAGCAACAGATTTATGGGCGGTGTAACCAGATACAGGGA-----CATCTTAGCCTTTGTCCTGGTGTCCA-GGGGT--------------------------------CTGCTGATAATATGCCCTGTATGTCAC
i otoGar3.GL873745         I 66 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=91191.000000
s hg38.chr5_KI270793v1_alt     15459 14 +    126136 AGCCTGG--------GGGGTGA
s panTro5.chr5             181281222 14 - 181907262 AGCCTGG--------GGGGTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002673 14 - 183735486 AGCCTGG--------GGGGTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93324 14 +    698298 AGCCTGG--------GGGGTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517827 14 - 121039945 AGCCTGG--------GGGGTGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179471220 14 - 180051392 AGCCTGG--------GGAGTCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181202339 14 - 181584905 AGCCTGG--------GGAGTCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      197197 14 -   1764207 AGCCTGG--------GGAGTCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210943 14 -  16742782 AGCCTGG--------GGAGTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520935 14 -  91010382 AGCCTGG--------GGAGTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      109461 14 -    438239 AGCCTGG--------GGAGTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      148245 14 -    514179 AGCCTGG--------GGAGTGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                517656 22 - 204313951 TGCCAGGTGTGTACAGGGGTGA
i calJac3.chr2             C 0 T 72045
s otoGar3.GL873745           1844291 14 -   2165740 AGCCCAG--------GGGGTTA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1      263560  0 -    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=304195.000000
s hg38.chr5_KI270793v1_alt     15473 59 +    126136 TAGACAAGGC-AGGGTAGTGGTGGGGGGTACGTATGGTGGTA-GTAGACGAGGGTATACAC
s panTro5.chr5             181281236 56 - 181907262 TAGACAAGGC-AGGGTAGTGA---GGGGTACGTATGGTGGTA-GTAGACGAGGGTATACAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002687 56 - 183735486 TAGACAAGGC-AGGGTAGTGA---GGGGTACGTATGGTGGTA-GTAGACGAGGGTATACAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93338 56 +    698298 TAGACAAGGC-AGGGTAGTGG---AGGGTACGTATGGTGGTA-GTAGACGAGGGTATACAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517841 56 - 121039945 TACACAAGGC-AGGGTAGTGG---AGGGTACGTATGGTGGTA-GTAGACGAGGGTATACAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179471234 55 - 180051392 TACACAAGGC-AGGGTAGT-G---GGGGTACGTATGGTGGTA-GTAGATGAGGGTATACAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181202353 55 - 181584905 TACACAAGGC-AGGGTAGT-G---GGGGTACGTATGGTGGTA-GTAGATGAGGGTATACAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      197211 55 -   1764207 TACACAAGGC-AGGGTAGT-G---GGGGTACGTATGGTGGTA-GTAGATGAGGGTATACAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      210957 55 -  16742782 TACACAAGGC-AGGGTAGT-G---GGGGTACGTATGGTGGTA-GTAGATGAGGGTATACAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90520949 55 -  91010382 TACACAAGGC-AGGGTAGT-G---GGGGTACGTATGGTGGTA-GTAGATGAGGGTATACAC
i chlSab2.chr4             C 0 I 644
s manLeu1.NW_012110441v1      109475 55 -    438239 TACACAAGGC-AGGGTAGT-G---GGGGTACGTATGGTGGTA-GTAGATGAGGGTATACAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      148259 56 -    514179 TACACAAGGC-AGGGTAGTGG---GGGGTACGTATGGTGGTA-GTAGACGAGGGTATACAC
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1844305 50 -   2165740 ---ACAGGGCTAAGGGGGTTA---GGAGAGGCTGGGGTGGGGCGCAAACGTGGCAA-----
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1      263560  0 -    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2                517678 72045 - 204313951 T
e canFam3.chr34             11685982 2001 +  42124431 I

a score=18612.000000
s hg38.chr5_KI270793v1_alt     15532 3 +    126136 AGA
s panTro5.chr5             181281292 3 - 181907262 AGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002743 3 - 183735486 AGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93394 3 +    698298 AGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517897 3 - 121039945 AGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179471289 3 - 180051392 AGA
i rheMac8.chr6             C 0 I 458
s macFas5.chr6             181202408 3 - 181584905 AGA
i macFas5.chr6             C 0 I 32
s macNem1.NW_012012389v1      197266 3 -   1764207 AGA
i macNem1.NW_012012389v1   C 0 I 426
s cerAty1.NW_012009470v1      211012 3 -  16742782 AGA
i cerAty1.NW_012009470v1   C 0 I 1250
s manLeu1.NW_012110441v1      109530 3 -    438239 AGA
i manLeu1.NW_012110441v1   C 0 I 498
s colAng1.NW_012118799v1      148315 3 -    514179 AGA
i colAng1.NW_012118799v1   C 0 I 290
s otoGar3.GL873745           1844355 3 -   2165740 AGA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1      263560 0 -    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2                517678 72045 - 204313951 T
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521004 644 -  91010382 I

a score=-81.000000
s hg38.chr5_KI270793v1_alt     15535 2 +    126136 -CA
s panTro5.chr5             181281295 2 - 181907262 -CA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002746 2 - 183735486 -CA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93397 2 +    698298 -CA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517900 2 - 121039945 -CA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181202443 2 - 181584905 -TA
i macFas5.chr6             I 32 C 0
s otoGar3.GL873745           1844358 2 -   2165740 CC-
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1      263560 0 -    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2                517678 72045 - 204313951 T
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      109533 498 -    438239 I
e chlSab2.chr4              90521004 644 -  91010382 I
e cerAty1.NW_012009470v1      211015 1250 -  16742782 I
e colAng1.NW_012118799v1      148318 290 -    514179 I
e macNem1.NW_012012389v1      197269 426 -   1764207 I
e rheMac8.chr6             179471292 458 - 180051392 I

a score=26064.000000
s hg38.chr5_KI270793v1_alt     15537 13 +    126136 GAGGGTGTACATG
s panTro5.chr5             181281297 13 - 181907262 GAGGGTGTACATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002748 13 - 183735486 GAGGGTGTACATG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93399 13 +    698298 GAGGGTGTACATg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517902 13 - 121039945 GAGGGTGTACACG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181202445 13 - 181584905 GAGGGTGTACACG
i macFas5.chr6             C 0 I 269
s calJac3.chr2             203796718 13 + 204313951 GGGGGTGTGTGCA
i calJac3.chr2             I 440 C 0
s otoGar3.GL873745           1844360 13 -   2165740 GAGGGTGTGTGCA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1      263560  0 -    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      109533 498 -    438239 I
e chlSab2.chr4              90521004 644 -  91010382 I
e cerAty1.NW_012009470v1      211015 1250 -  16742782 I
e colAng1.NW_012118799v1      148318 290 -    514179 I
e macNem1.NW_012012389v1      197269 426 -   1764207 I
e rheMac8.chr6             179471292 458 - 180051392 I

a score=8457.000000
s hg38.chr5_KI270793v1_alt     15550 6 +    126136 GGGAAt
s panTro5.chr5             181281310 6 - 181907262 GGGAGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002761 6 - 183735486 GGGAGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93412 6 +    698298 gggagt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517915 6 - 121039945 GGGAGT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181202727 6 - 181584905 gggagt
i macFas5.chr6             I 269 I 10
s calJac3.chr2             203796731 6 + 204313951 GGAGGT
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1844373 3 -   2165740 GGG---
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1      263560 0 -    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      109533 498 -    438239 I
e chlSab2.chr4              90521004 644 -  91010382 I
e cerAty1.NW_012009470v1      211015 1250 -  16742782 I
e colAng1.NW_012118799v1      148318 290 -    514179 I
e macNem1.NW_012012389v1      197269 426 -   1764207 I
e rheMac8.chr6             179471292 458 - 180051392 I

a score=63069.000000
s hg38.chr5_KI270793v1_alt     15556 23 +    126136 gtgtgcaggggctg----------tgtgcaggg
s panTro5.chr5             181281316 23 - 181907262 GTGTGCAGGGAGTG----------TGTGCAGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002767 23 - 183735486 GTGTGCAGGGAGTG----------TGTGCAGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93418 23 +    698298 gtgtgcaggggctg----------tgtgcaggg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517921 23 - 121039945 GTGTGCAGGGGCTG----------TATACAGGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181202743 23 - 181584905 gtgtgtaggggttg----------tgtgcaggg
i macFas5.chr6             I 10 C 0
s macNem1.NW_012012389v1      197695 23 -   1764207 gtgtgtaggggttg----------tgtgcaggt
i macNem1.NW_012012389v1   I 426 C 0
s colAng1.NW_012118799v1      148608 23 -    514179 gtgtgtaggggttg----------tgtgcaggg
i colAng1.NW_012118799v1   I 290 C 0
s calJac3.chr2             203796737 33 + 204313951 GTGAGCAGAGGATGCCACAGGGTATGTGCAGGG
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1844376 17 -   2165740 ------AGGGATGG----------GGAGCAGGG
i otoGar3.GL873745         C 0 I 8
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e cebCap1.NW_016108158v1      263560  0 -    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      109533 498 -    438239 I
e chlSab2.chr4              90521004 644 -  91010382 I
e cerAty1.NW_012009470v1      211015 1250 -  16742782 I
e rheMac8.chr6             179471292 458 - 180051392 I

a score=-960.000000
s hg38.chr5_KI270793v1_alt     15579 26 +    126136 agtgtgtgtggatggtgta---gg-ggagt
s panTro5.chr5             181281339 27 - 181907262 GCTGTGTGCAGGGAGTGTG---TGTGGATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002790 27 - 183735486 GCTGTGTGCAGGGAGTGTG---TGTGGATG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93441 14 +    698298 agtgtgtgt----------------ggatg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517944 27 - 121039945 GCTGTGTGCAGGGAGTGTG---TGTGGATG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181202766 26 - 181584905 agtgtgtgTGGATGGTGTA---GGGGAGT-
i macFas5.chr6             C 0 I 81
s macNem1.NW_012012389v1      197718  2 -   1764207 ag----------------------------
i macNem1.NW_012012389v1   C 0 I 12
s colAng1.NW_012118799v1      148631 26 -    514179 agtgtgtgtggatggtgta---ggggagt-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796770 29 + 204313951 AGTACATCCAGGAGGTGTATATTGGGAGT-
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1      263560  0 -    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      109533 498 -    438239 I
e chlSab2.chr4              90521004 644 -  91010382 I
e cerAty1.NW_012009470v1      211015 1250 -  16742782 I
e rheMac8.chr6             179471292 458 - 180051392 I

a score=23485.000000
s hg38.chr5_KI270793v1_alt     15605 5 +    126136 gtgta
s panTro5.chr5             181281366 5 - 181907262 GTGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002817 5 - 183735486 GTGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93455 5 +    698298 gtgta
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179471750 5 - 180051392 GTGTA
i rheMac8.chr6             I 458 C 0
s macFas5.chr6             181202873 5 - 181584905 GTGTA
i macFas5.chr6             I 81 C 0
s macNem1.NW_012012389v1      197732 5 -   1764207 gtgta
i macNem1.NW_012012389v1   I 12 C 0
s cerAty1.NW_012009470v1      212265 5 -  16742782 GTGTA
i cerAty1.NW_012009470v1   I 1250 C 0
s chlSab2.chr4              90521648 5 -  91010382 gtgta
i chlSab2.chr4             I 644 C 0
s manLeu1.NW_012110441v1      110031 5 -    438239 GTGTA
i manLeu1.NW_012110441v1   I 498 C 0
s calJac3.chr2             203796799 5 + 204313951 ATGCA
i calJac3.chr2             C 0 T 207
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1      263560 0 -    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e nomLeu3.chr6             120517971 0 - 121039945 C
e colAng1.NW_012118799v1      148657 0 -    514179 C

a score=559312.000000
s hg38.chr5_KI270793v1_alt     15610 95 +    126136 ggggagtgtgtagggggtgtgtGCAGAGGTTGTACACGGGG--TGTGCAGGAGGTGTACTCAGAATGTGTTCAGGGAGTGTGTGCAGAAGGTGTACA
s panTro5.chr5             181281371 95 - 181907262 AGGGAGTGTGTAGGGGGTGTATGCAGAGGTTGTACACGGGG--TGTGCAGGAGGTGTACTCAGAATGTGTTCAGGGAGTGTGTGCAGAAGGTGTACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002822 95 - 183735486 AGGGAGTGTGTAGGGGGTGTATGCAGAGGTTGTACACGGGG--TGTGCAGGAGGTGTACTCAGAATGTGTTCAGGGAGTGTGTGCAGAAGGTGTACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93460 95 +    698298 ggggagtgtgtagggggtgtgtGCAGAGGTTGTACACGGGG--TGTGCAGGAGGTGTACTCAGAATGTGTTCAGGGAGTGTGTGCAGAAGGTGTACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120517971 85 - 121039945 -------TTGTAGGGGGTGTGTGCAGAGGTTGTACAC---G--TGTGCAGGAGGTGTACTCAGAATGTGTGCAGGGAGTGTGTGCAGAAGGTGTACA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179471755 95 - 180051392 GGGGAGTGTGTAGCGGGTGTGTACAGAGGTTGTACATGGGG--TGTGCAGTAGGTGTACTCAGAATGTGTGCAGGGAGTGTGTGCAGAAGGTGTACA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181202878 95 - 181584905 GGGGAGTGTGTAGCGGGTGTGTACAGAGGTTGTACATGGGG--TGTGCAGTAGGTGTACTCAGAATGTGTGCAGGGAGTGTGTGCAGAAGGTGTACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      197737 95 -   1764207 ggggagtgtgtagcgggtgtgtaCAGAGGTTGTACATGGGG--TGTGCAGTAGGTGTACTCAGAATGTGTGCAGGGAGTGTGTGCAGAAGGTGTACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212270 95 -  16742782 GGGGAGTGTGTAGCGGGTGTGTACAGAGGTTGTACATGGGG--TGTGCAGTAGGTGTACTCAGAATGTGTGCAGGGAGTGTGTGCAGAAGGTGTACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90521653 93 -  91010382 ggggagtgtgtagcgggtgtgtgCAGAGGTTGCACACAGGG--TATGCAGTAGGTGTACTCAGAATGTGTGCAGGGA--GTGTGCAGAAGGTGTACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110036 95 -    438239 GGGGAGTGCGTAGCGGGTGTGTACAGAGGTTGTACATGGGG--TGTGCAGTAGGTGTACTCAGAATGTGTGCAGGGAGTGTGTGCAGAAGGTGTACA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      148657 88 -    514179 -------gtgtagcgggtgtgtgCAGAGGTTTTACACGGGG--TGTGCAGTAGATGTACTCAGAATGTGTGCAGGGAGTGTGTGCAGAAGGTGTACA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796597 85 + 204313951 GGGGTGTGTGCAGGAGGTGTGTGCAGAGGAGGCACACAGGGTCTGTGCAGG-----------GAGTATGTACAGGG-GTGTACATAGGAAGTGTGCA
i calJac3.chr2             T 207 T 86
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1      263560  0 -    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=669138.000000
s hg38.chr5_KI270793v1_alt     15705 106 +    126136 TGGGGTGTATGCAGGAGGAGTGTGCAGAGGGTGTACATGTAGGGGGTGTGTGCAGACAGTATACAGAAGGGGTGTGTGCAGAGGATGCACACAGGGTCTCTGCAGG
s panTro5.chr5             181281466 106 - 181907262 TGGGGTGTATGCAGGAGGAGTGTGCAGAGGGTGTACATGTAGGGGGTGTGTGCCGACAGTATACAGAAGGGGTGTGTGCAGAGGATGCACACAGGGTCTCTGCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183002917 106 - 183735486 TGGGGTGTATGCAGGAGGAGTGTGCAGAGGGTGTACATGTAGGGGGTGTGTGCCGACAGTATACAGAAGGGGTGTGTGCAGAGGATGCACACAGGGTCTCTGCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93555 106 +    698298 TGGGTTGTATGCAGGAAGAGTGTGCAGAGGGTGTACATGTAGGGGGTGTGTGCAGACAGTATACAGAAGGGGTGTGTGCAGAGGATGCACACAGGGTCTCTGCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518056 106 - 121039945 TGGGGTGTATGCAGGAGGAGTGTGCAGAGGGTGTACATGTAAGGGGTGTGTGCAGACAGTATACACAAGGGGTGTGTACAGAGGATGCACACAGGGTCTCTGCAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179471850 106 - 180051392 TGGGGTGTATGCAGGAGGAGTGTGCAGAGGGTGTACATGTAGGGGGTGTGTGCAGAGAGTATACACAAGGAGTGTGTACAGAGGATGCACACAGGGTCTGTGCAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181202973 106 - 181584905 TGGGGTGTATGCAGGAGGAGTGTGCAGAGGGTGTACATGTAGGGGGTGTGTGCAGAGAGTATACACAAGGAGTGTGTACAGAGGATGCACACAGGGTCTGTGCAGG
i macFas5.chr6             C 0 T 350
s macNem1.NW_012012389v1      197832 106 -   1764207 TGGGGTGTATGCAGGAGGAGTGTGCAGAGGGTGTACATGTAGGGGGTGTGTGCAGAGAGTATACACAAGGAGTGTGTACAGAGGATGCACACAGGGTCTGTGCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212365 106 -  16742782 TGGGGTGTATGCAGGAGGAGTGTGCAGAGGGTGTACATGTAGGGGGTGTGTGCAGAGAGTATACACAAGGTGTGTGTACAGAGGATGCACACAGGGTCTGTGCAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90521746 106 -  91010382 TGGGGTATATGCAGGAGGAGTGTGCAGAGGGTGTACATGTAGGGGGTGTGTGCAGAGAGTATACACAAGGAGTGTGTACAGAGGATGCACACAGGGTCTGTACAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110131 106 -    438239 TGGGGTGTATGCAGGAGGAGTGTGCAGAGGGTGTACATGTAGGGGGTGTGTGCAGAGAGTATACACAAGGTGTGTGTACAGAGGATGCACACAGGGTCTGTGCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      148745 101 -    514179 TAGGGTGTATGCAGGAGGAGTGTGCAGCGGGTGTACATGTAGGGGGTGTGTGC--AGAGTATACAT---GAGTGTGTGCAGAGGATGCACACAGGGTCTGTGCAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796596  52 + 204313951 TGGGGTGTGTGCAGGAG------------------------------------------------------GTGTGTGCAGAGGAGGCACACAGGGTCTGTGCAGG
i calJac3.chr2             T 86 C 0
s cebCap1.NW_016108158v1       35231  52 +    298490 TGGGGTGTGTGCAGGAG------------------------------------------------------GTGTGTGCAGAGGATGCACACAGGGTCTGTGCAGG
i cebCap1.NW_016108158v1   I 642 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393   8 -   2165740 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=141101.000000
s hg38.chr5_KI270793v1_alt     15811 64 +    126136 GAGTATGTGCA-GTGCTGTACATAAGGAGTATGCAGGGGGTATATACAGGGTGTATGTGCAA--------GGG
s panTro5.chr5             181281572 64 - 181907262 GAGTATGTGCA-GTGCTGTACATAAGGAGTATGCAGGGGGTATATACAGGGTGTATGTGCAA--------GGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003023 64 - 183735486 GAGTATGTGCA-GTGCTGTACATAAGGAGTATGCAGGGGGTATATACAGGGTGTATGTGCAA--------GGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93661 64 +    698298 GAGTATGTGCA-GGGCTGTACATAAGGAGTATGCAGGGGGTATATACAGGGTGTATGTGCAA--------GGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518162 63 - 121039945 GAGTATGTGCA-GTGGTGTACATAAGGAGTATGCA-GGGGTATATACAGGGTGTATGTGCAA--------GGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181202729 59 - 181584905 gagtgtgta--------------ggggagtgtgtaggggttgtgtgcagggagtgtgtgTGGATGGTGTAGGG
i macFas5.chr6             T 350 C 0
s colAng1.NW_012118799v1      148846 62 -    514179 GAGTATGTGCA-GGG--GTACATAGGGAGTATGCAGGGGGTATATACAGGGTGTTTGTGCAG--------GGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796648 63 + 204313951 GAGTATGTACA-GGGGTGTACATAGGAAGTGTGCA-GGGGTTTATACAGGGTGTGTGTGCAA--------GGG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       35283 64 +    298490 GAGTACGTACAGGGGGTGTACATAGGATGTGTGCA-GGGGTTTATACAGGGTGTGTGTGCAA--------GGG
i cebCap1.NW_016108158v1   C 0 I 134
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237  0 -    438239 C
e chlSab2.chr4              90521852  0 -  91010382 C
e cerAty1.NW_012009470v1      212471  0 -  16742782 C
e macNem1.NW_012012389v1      197938  0 -   1764207 C
e rheMac8.chr6             179471956  0 - 180051392 C

a score=3267.000000
s hg38.chr5_KI270793v1_alt     15875 14 +    126136 GTGTGTGCAACAGT
s panTro5.chr5             181281636 14 - 181907262 ATGTGTGCAACAGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003087 14 - 183735486 ATGTGTGCAACAGT
i panPan2.chr5             C 0 I 502
s gorGor5.CYUI01015805v1       93725 14 +    698298 GTGTGTGCAACAGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518225  2 - 121039945 GT------------
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181202788 13 - 181584905 GAGTGTGTAGTGG-
i macFas5.chr6             C 0 I 278
s colAng1.NW_012118799v1      148908 13 -    514179 GTGTGTACAGAGG-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796711 13 + 204313951 -TTGATACGGGGGT
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237  0 -    438239 C
e chlSab2.chr4              90521852  0 -  91010382 C
e cerAty1.NW_012009470v1      212471  0 -  16742782 C
e macNem1.NW_012012389v1      197938  0 -   1764207 C
e rheMac8.chr6             179471956  0 - 180051392 C

a score=9628.000000
s hg38.chr5_KI270793v1_alt     15889 11 +    126136 GTGTGCAGGAG
s panTro5.chr5             181281650 11 - 181907262 GTGTGCAGGAG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93739 11 +    698298 GTGTGCAGGAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518227 11 - 121039945 GTGTGCAGAGG
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203796724 11 + 204313951 GTGTGCAGGAG
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237  0 -    438239 C
e chlSab2.chr4              90521852  0 -  91010382 C
e cerAty1.NW_012009470v1      212471  0 -  16742782 C
e colAng1.NW_012118799v1      148921  0 -    514179 C
e macNem1.NW_012012389v1      197938  0 -   1764207 C
e macFas5.chr6             181202801 278 - 181584905 I
e rheMac8.chr6             179471956  0 - 180051392 C
e panPan2.chr5             183003101 502 - 183735486 I

a score=34109.000000
s hg38.chr5_KI270793v1_alt     15900 12 +    126136 GTGTGTGCAGGG
s panTro5.chr5             181281661 12 - 181907262 GTGTGTGCAGGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93750 12 +    698298 GTGTGTGCAGAG
i gorGor5.CYUI01015805v1   C 0 I 63
s nomLeu3.chr6             120518238 12 - 121039945 GTGTGTGCAGGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181203079 12 - 181584905 GTGTGTGCAGGG
i macFas5.chr6             I 278 C 0
s cerAty1.NW_012009470v1      212471 12 -  16742782 GTGTGTGCAGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90521852 12 -  91010382 GTGTGTGCAGGG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      148921 12 -    514179 GTGTGTGCAGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796735 11 + 204313951 GTGTGAGCAGA-
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237  0 -    438239 C
e macNem1.NW_012012389v1      197938  0 -   1764207 C
e rheMac8.chr6             179471956  0 - 180051392 C
e panPan2.chr5             183003101 502 - 183735486 I

a score=21765.000000
s hg38.chr5_KI270793v1_alt     15912 12 +    126136 TCTATGTGTGGG
s panTro5.chr5             181281673 12 - 181907262 GCTATGTGTGGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93825 12 +    698298 GCTATGTGTGGG
i gorGor5.CYUI01015805v1   I 63 C 0
s nomLeu3.chr6             120518250 10 - 121039945 --GCTGTGTGGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181203091 12 - 181584905 ACTATGTGCGGG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      212483 12 -  16742782 ACTATGTGTGGG
i cerAty1.NW_012009470v1   C 0 I 13
s chlSab2.chr4              90521864 12 -  91010382 ACTATGTGCGGG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      148933 12 -    514179 ACTGTGTGCAGG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796746  0 + 204313951 C
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237  0 -    438239 C
e macNem1.NW_012012389v1      197938  0 -   1764207 C
e rheMac8.chr6             179471956  0 - 180051392 C
e panPan2.chr5             183003101 502 - 183735486 I

a score=35329.000000
s hg38.chr5_KI270793v1_alt     15924 24 +    126136 GGTGTGTGCAACAGTGTGTGCAGG
s panTro5.chr5             181281685 24 - 181907262 GGTGTGTGCAACAGTATGTGCAGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93837 13 +    698298 GGTGTGTGCAACA-----------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518260 24 - 121039945 GGTGTGTGCAACAGTGTGTGCAGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181203103 24 - 181584905 GGTGTGTGCAACAGTGTGTGCAGG
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90521876 24 -  91010382 GGTGTGTGCAACAGTGTGTGCAGG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      148945 24 -    514179 GGTGTGTGCAACAGTGTGTGCAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796746 11 + 204313951 ---GGATGCCACAG----------
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237  0 -    438239 C
e cerAty1.NW_012009470v1      212495 13 -  16742782 I
e macNem1.NW_012012389v1      197938  0 -   1764207 C
e rheMac8.chr6             179471956  0 - 180051392 C
e panPan2.chr5             183003101 502 - 183735486 I

a score=33062.000000
s hg38.chr5_KI270793v1_alt     15948 12 +    126136 AGGTGTGTGCAG
s panTro5.chr5             181281709 12 - 181907262 AGGTGTGTGCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003603 12 - 183735486 AGGTGTGTGCAG
i panPan2.chr5             I 502 C 0
s gorGor5.CYUI01015805v1       93850 10 +    698298 --GTGTGTGCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518284 12 - 121039945 GGGTGTGTGCAG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181203127 12 - 181584905 AGGTTTGTGCAG
i macFas5.chr6             C 0 I 1
s chlSab2.chr4              90521900 12 -  91010382 AGGTTTGTGCAG
i chlSab2.chr4             C 0 I 3
s colAng1.NW_012118799v1      148969 12 -    514179 AGGTTTGTGCAG
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203796757 11 + 204313951 -GGTATGTGCAG
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237  0 -    438239 C
e cerAty1.NW_012009470v1      212495 13 -  16742782 I
e macNem1.NW_012012389v1      197938  0 -   1764207 C
e rheMac8.chr6             179471956  0 - 180051392 C

a score=-3673.000000
s hg38.chr5_KI270793v1_alt     15960 2 +    126136 -GA
s panTro5.chr5             181281721 2 - 181907262 -GG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003615 2 - 183735486 -GA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93860 2 +    698298 -GA
i gorGor5.CYUI01015805v1   C 0 T 100
s nomLeu3.chr6             120518296 2 - 121039945 -GG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181203140 1 - 181584905 -G-
i macFas5.chr6             I 1 C 0
s colAng1.NW_012118799v1      148982 1 -    514179 -G-
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203796768 2 + 204313951 GG-
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237 0 -    438239 C
e chlSab2.chr4              90521912 3 -  91010382 I
e cerAty1.NW_012009470v1      212495 13 -  16742782 I
e macNem1.NW_012012389v1      197938 0 -   1764207 C
e rheMac8.chr6             179471956 0 - 180051392 C

a score=7249.000000
s hg38.chr5_KI270793v1_alt     15962 6 +    126136 GGTGTG
s panTro5.chr5             181281723 6 - 181907262 GCTATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003617 6 - 183735486 GGTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93762 6 +    698298 GGTGTG
i gorGor5.CYUI01015805v1   T 100 C 0
s macFas5.chr6             181203141 6 - 181584905 GGTGTG
i macFas5.chr6             C 0 C 0
s colAng1.NW_012118799v1      148983 6 -    514179 GGTGTG
i colAng1.NW_012118799v1   C 0 I 16
s calJac3.chr2             203796770 6 + 204313951 AGTACA
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e nomLeu3.chr6             120518298 0 - 121039945 C
e manLeu1.NW_012110441v1      110237 0 -    438239 C
e chlSab2.chr4              90521912 3 -  91010382 I
e cerAty1.NW_012009470v1      212495 13 -  16742782 I
e macNem1.NW_012012389v1      197938 0 -   1764207 C
e rheMac8.chr6             179471956 0 - 180051392 C

a score=1135.000000
s hg38.chr5_KI270793v1_alt     15968 2 +    126136 TG
s panTro5.chr5             181281729 2 - 181907262 TG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003623 2 - 183735486 TG
i panPan2.chr5             C 0 I 93
s gorGor5.CYUI01015805v1       93768 2 +    698298 TG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518298 1 - 121039945 -G
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203796776 2 + 204313951 TC
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237 0 -    438239 C
e chlSab2.chr4              90521912 3 -  91010382 I
e cerAty1.NW_012009470v1      212495 13 -  16742782 I
e colAng1.NW_012118799v1      148989 16 -    514179 I
e macNem1.NW_012012389v1      197938 0 -   1764207 C
e macFas5.chr6             181203147 0 - 181584905 C
e rheMac8.chr6             179471956 0 - 180051392 C

a score=4103.000000
s hg38.chr5_KI270793v1_alt     15970 6 +    126136 CAGGAG
s panTro5.chr5             181281731 6 - 181907262 TGGGGG
i panTro5.chr5             C 0 I 25
s gorGor5.CYUI01015805v1       93770 6 +    698298 CAGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181203147 6 - 181584905 CAGGGG
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203796778 6 + 204313951 CAGGAG
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e nomLeu3.chr6             120518299 0 - 121039945 C
e manLeu1.NW_012110441v1      110237 0 -    438239 C
e chlSab2.chr4              90521912 3 -  91010382 I
e cerAty1.NW_012009470v1      212495 13 -  16742782 I
e colAng1.NW_012118799v1      148989 16 -    514179 I
e macNem1.NW_012012389v1      197938 0 -   1764207 C
e rheMac8.chr6             179471956 0 - 180051392 C
e panPan2.chr5             183003625 93 - 183735486 I

a score=4247.000000
s hg38.chr5_KI270793v1_alt     15976 25 +    126136 CTATGTGTGGGGGTGTGTGCAACAG---
s gorGor5.CYUI01015805v1       93776 25 +    698298 CTATGTGTGGGGGTGTGTGCAACAG---
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518299 23 - 121039945 --CTGTGTGGGGGTGTGTGCAATAG---
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181203153 23 - 181584905 -TATACAC-AGGGTGTGTGCAGGAG---
i macFas5.chr6             C 0 I 1
s calJac3.chr2             203796784 14 + 204313951 --------------GTGTATATTGGGAG
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181281737 25 - 181907262 I
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237  0 -    438239 C
e chlSab2.chr4              90521912  3 -  91010382 I
e cerAty1.NW_012009470v1      212495 13 -  16742782 I
e colAng1.NW_012118799v1      148989 16 -    514179 I
e macNem1.NW_012012389v1      197938  0 -   1764207 C
e rheMac8.chr6             179471956  0 - 180051392 C
e panPan2.chr5             183003625 93 - 183735486 I

a score=8100.000000
s hg38.chr5_KI270793v1_alt     16001 11 +    126136 TATGTGCA-GAG
s panTro5.chr5             181281762 11 - 181907262 TGTGTGCA-GAG
i panTro5.chr5             I 25 C 0
s gorGor5.CYUI01015805v1       93801 12 +    698298 TATGTGCAGGAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518322 12 - 121039945 TGTGTGCAGGAG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181203177 11 - 181584905 TGTGTGCA-TAG
i macFas5.chr6             I 1 C 0
s calJac3.chr2             203796798  9 + 204313951 --TATGCA-GGG
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110237  0 -    438239 C
e chlSab2.chr4              90521912  3 -  91010382 I
e cerAty1.NW_012009470v1      212495 13 -  16742782 I
e colAng1.NW_012118799v1      148989 16 -    514179 I
e macNem1.NW_012012389v1      197938  0 -   1764207 C
e rheMac8.chr6             179471956  0 - 180051392 C
e panPan2.chr5             183003625 93 - 183735486 I

a score=63188.000000
s hg38.chr5_KI270793v1_alt     16012 38 +    126136 GTGTGTGTAGGGGCTATGTGTGGGGGTGTGTGCAACAG-
s panTro5.chr5             181281773 38 - 181907262 GTGTGTGTAGGGGCTATGTGTGGGGGTGTGTGCAATAG-
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93813 38 +    698298 GTGTGTTCAGGGGCTATGTGTGGGGGTGTGTGCAACAG-
i gorGor5.CYUI01015805v1   C 0 I 50
s nomLeu3.chr6             120518334 13 - 121039945 GTGTGTGCAGAGG--------------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179471956 38 - 180051392 GTGTGTGCAGGGACTATGTGCGGGGGTGTGTGCAACAG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203188 33 - 181584905 GTGTGTGCAGGGGGTATACACG-----GTGTGTGAAGG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      197938 38 -   1764207 GTGTGTGCAGGGACTATGTGCGGGGGTGTGTGCAACAG-
i macNem1.NW_012012389v1   C 0 C 0
s manLeu1.NW_012110441v1      110237 38 -    438239 GTGTGTGCAGGGACTGTGTGCGGGGGTGTGTGCAACAG-
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203796807 39 + 204313951 GTTTATACAGGGTGTGTGTGCAGGGGTGTGTACAGAGGG
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521912  3 -  91010382 I
e cerAty1.NW_012009470v1      212495 13 -  16742782 I
e colAng1.NW_012118799v1      148989 16 -    514179 I
e panPan2.chr5             183003625 93 - 183735486 I

a score=29231.000000
s hg38.chr5_KI270793v1_alt     16050 11 +    126136 TGTGTGCAGGA
s panTro5.chr5             181281811 11 - 181907262 TGTGTGCAGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003718 11 - 183735486 TGTGTGCAGAG
i panPan2.chr5             I 93 C 0
s gorGor5.CYUI01015805v1       93901 11 +    698298 TATGTGCAGGG
i gorGor5.CYUI01015805v1   I 50 C 0
s nomLeu3.chr6             120518347 11 - 121039945 CGTGTGCAGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179471994 11 - 180051392 TGTGTGCAGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203221 10 - 181584905 TGTGTAC-GGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      197976 11 -   1764207 TGTGTGCAGGA
i macNem1.NW_012012389v1   C 0 C 0
s manLeu1.NW_012110441v1      110275 11 -    438239 TGTGTGCAGGA
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203796846 10 + 204313951 TGGGTGCAGG-
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521912  3 -  91010382 I
e cerAty1.NW_012009470v1      212495 13 -  16742782 I
e colAng1.NW_012118799v1      148989 16 -    514179 I

a score=28216.000000
s hg38.chr5_KI270793v1_alt     16061 7 +    126136 GGTGTGT
s panTro5.chr5             181281822 7 - 181907262 GCTATGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003729 7 - 183735486 GCTATGT
i panPan2.chr5             C 0 T 172
s gorGor5.CYUI01015805v1       93912 7 +    698298 GCTATGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518358 7 - 121039945 GCTGTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472005 7 - 180051392 GGTTTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203231 7 - 181584905 GGTGTGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      197987 7 -   1764207 GGTTTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212508 7 -  16742782 GGTTTGT
i cerAty1.NW_012009470v1   I 13 C 0
s manLeu1.NW_012110441v1      110286 7 -    438239 GGTTTGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149005 7 -    514179 GGTGTGT
i colAng1.NW_012118799v1   I 16 C 0
s calJac3.chr2             203796856 7 + 204313951 GGTGTGT
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521912 3 -  91010382 I

a score=212123.000000
s hg38.chr5_KI270793v1_alt     16068 64 +    126136 GCAGGAGGTGTGTGCAACAGTGTGCAGGGGGTGTACACAAGGTGTGTGCA--------GGAGGTGTGTGTAG
s panTro5.chr5             181281829 64 - 181907262 GCAGGAGGTGTGTGCAACAGTGTGCAGGGGGTGTACACAAGGTGTGTGCA--------GGAGGTGTGTGTAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003564 64 - 183735486 GCAGGAGGTGTGTGCAACAGTGTGCAGGGGGTGTACACAAGGTGTGTGCA--------GGAGGTGTGTGTAG
i panPan2.chr5             T 172 C 0
s gorGor5.CYUI01015805v1       93919 64 +    698298 GCAGGAGGTGTGTGCAACAGTGTGCAGGGGGTGTACACAAGGTGTGTGCA--------GGAGGTGTGTGTAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518365 63 - 121039945 GCAGGAGGTATGTGCAACAGTGTGCA-GGGGTGTACACAAGGTGTGTGCA--------GGAGGTGTGTGTAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472012 51 - 180051392 GCAGAGG------------GTGTGCA-GGGGTATACACAGGGTGTGTGCA--------GGAGATGTGTGCAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203238 41 - 181584905 GCAG-----------------------GGAGTATACACAGGGTGTGTGTA--------GGAGGTGTCTGCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      197994 51 -   1764207 GCAGAGG------------GTGTGCA-GGGGTGTACACAGGGTGTGTGCA--------GGAGATGTGTGCAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212515 51 -  16742782 GCAGAGG------------GTGTGCA-GGGGTATACACAGGGTGTGTGCA--------GGAGATGTGTGCAT
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      110293 51 -    438239 GCAGAGG------------GTGTGCA-GGGGTATACACACGGTGTGTGCA--------GGAGATGTGTGCAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149012 61 -    514179 GCAGGAGAT----------GTGTGCA-TAGGTGTGTTCAGGGGGTATACACGGTGTGTGAAGGTGTGTGTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796863 54 + 204313951 GCAGGAGGT----------GTGTGCAGGGGATATACACAGGGTGTGTGCA--------GGAGGTGTGTGCAG
i calJac3.chr2             C 0 T 199
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521912  3 -  91010382 I

a score=89569.000000
s hg38.chr5_KI270793v1_alt     16132 23 +    126136 ATGTGTGTGCAGGAGGTATACAC
s panTro5.chr5             181281893 23 - 181907262 ATGTGTGTGCAGGAGGTATACAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003628 23 - 183735486 ATGTGTGTGCAGGAGGTATACAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       93983 23 +    698298 ATGTGTGTGCAGGAGGTATACAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518428 23 - 121039945 AGGTGTGTACAGGGGGTATACGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472063 23 - 180051392 AGGTGTGTGCAGGGGGTATACAC
i rheMac8.chr6             C 0 I 65
s macFas5.chr6             181203279 11 - 181584905 AGGTGTGTGCA------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198045 23 -   1764207 AGGTGTGTGCAGGGGGTATACAC
i macNem1.NW_012012389v1   C 0 I 74
s cerAty1.NW_012009470v1      212566 23 -  16742782 AGGTGTGTGCAGGGGGTATACAC
i cerAty1.NW_012009470v1   C 0 I 65
s manLeu1.NW_012110441v1      110344 23 -    438239 AGGTGTGTGCAGGGGGTATACAC
i manLeu1.NW_012110441v1   C 0 I 65
s colAng1.NW_012118799v1      149073 23 -    514179 AGGTGTGTGCAGGGAGTATACAC
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796917 199 + 204313951 T
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521912  3 -  91010382 I

a score=10435.000000
s hg38.chr5_KI270793v1_alt     16155 8 +    126136 AGGGTTTG
s panTro5.chr5             181281916 8 - 181907262 AGGGTTTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003651 8 - 183735486 AGGGTTTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94006 8 +    698298 AGGGTTTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518451 8 - 121039945 AGGGTTTG
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      149096 8 -    514179 AGGGTGTG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796917 199 + 204313951 T
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110367 65 -    438239 I
e chlSab2.chr4              90521912 3 -  91010382 I
e cerAty1.NW_012009470v1      212589 65 -  16742782 I
e macNem1.NW_012012389v1      198068 74 -   1764207 I
e macFas5.chr6             181203290 0 - 181584905 C
e rheMac8.chr6             179472086 65 - 180051392 I

a score=14988.000000
s hg38.chr5_KI270793v1_alt     16163 10 +    126136 TGCAGAGGAT
s panTro5.chr5             181281924 10 - 181907262 TGCAGAGGAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003659 10 - 183735486 TGCAGAGGAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94014 10 +    698298 TGCAGAGGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518459 10 - 121039945 TGCAGAGGAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472151  9 - 180051392 TGCAGAGGT-
i rheMac8.chr6             I 65 C 0
s cerAty1.NW_012009470v1      212654  9 -  16742782 TGCAGAGGT-
i cerAty1.NW_012009470v1   I 65 C 0
s manLeu1.NW_012110441v1      110432  9 -    438239 TGCAGAGGT-
i manLeu1.NW_012110441v1   I 65 C 0
s colAng1.NW_012118799v1      149104  5 -    514179 TGCAG-----
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796917 199 + 204313951 T
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521912  3 -  91010382 I
e macNem1.NW_012012389v1      198068 74 -   1764207 I
e macFas5.chr6             181203290  0 - 181584905 C

a score=19168.000000
s hg38.chr5_KI270793v1_alt     16173 7 +    126136 GTGTGTG
s panTro5.chr5             181281934 7 - 181907262 GTGTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003669 7 - 183735486 GTGTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94024 7 +    698298 GTGTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518469 7 - 121039945 GTGTGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472160 7 - 180051392 GTGTGCA
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      198142 7 -   1764207 GTGTGCA
i macNem1.NW_012012389v1   I 74 C 0
s cerAty1.NW_012009470v1      212663 7 -  16742782 GTGTGCA
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      110441 7 -    438239 GTGTGCA
i manLeu1.NW_012110441v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796917 199 + 204313951 T
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521912 3 -  91010382 I
e colAng1.NW_012118799v1      149109 0 -    514179 C
e macFas5.chr6             181203290 0 - 181584905 C

a score=369985.000000
s hg38.chr5_KI270793v1_alt     16180 66 +    126136 GGAGGTGTGTGCAGGGGATCTGTGCAGGGAGTGTACACAGGCTGTGTGCAGAGGCTATGTGCAGGG
s panTro5.chr5             181281941 66 - 181907262 GGAGGTGTGTGCAGGGGATCTGTGCAGGGAGTGTACACAGGCTGTGTGCAGAGGCTATGTGCAGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003676 66 - 183735486 GGAGGTGTGTGCAGGGGATCTGTGCAGGGAGTGTACACAGGCTGTGTGCAGAGGCTATGTGCAGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94031 66 +    698298 GGAGGTGTGTGCAGGGGATCTGTGCAGGGAGTGTACACAGGCTGTGTGCAGAGGCTATGTGCAGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518476 66 - 121039945 GGAGGTGTGTGCAGGGGATCTGTGCAGGGAGTGTGCACAGGCTGTGTGCAGAGGCTATGTGCAGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472167 66 - 180051392 GGAGGTGTGTGCAGGGGATATGTGCAGGGAGTGTACACAGGTTGTGTGCAGAGGCTATGTGCAGGG
i rheMac8.chr6             C 0 T 214
s macFas5.chr6             181203290 66 - 181584905 GGAGGTGTGTGCAGGGGATATGTGCAGGGAGTGTACACAGGTTGTGTGCAGAGGCTATGTGCAGGG
i macFas5.chr6             C 0 I 2
s macNem1.NW_012012389v1      198149 66 -   1764207 GGAGGTGTGTGCAGGGGATATGTGCAGGGAGTGTACACAGGTTGTGTGCAGAGGCTATGTGCAGGG
i macNem1.NW_012012389v1   C 0 T 214
s cerAty1.NW_012009470v1      212670 66 -  16742782 GGAGGTGTGTGCAGGGGATATGTGCAGGGAGTGTACACAGGTTGTGTGCAGAGGCTATGTGCAGGG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      110448 66 -    438239 GGAGGTGTGTGCAGGGGATATGTGCAGGGAGTGTACACAGGTTGTGTGCAGAGGCTATGTGCAGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149109 65 -    514179 -GAGGTGTGTGCAGGGGATATGTGCAGGGAGTGTACACAGACTGTGTGCAGAGGCTATGTGCAGGG
i colAng1.NW_012118799v1   C 0 I 2
s calJac3.chr2             203796718 65 + 204313951 GGGGGTGTGTGCAGGAGGTGTGAGCAGAGGATGC-CACAGGGTATGTGCAGGGAGTACATCCAGGA
i calJac3.chr2             T 199 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521912  3 -  91010382 I

a score=13299.000000
s hg38.chr5_KI270793v1_alt     16246 4 +    126136 GGTG
s panTro5.chr5             181282007 4 - 181907262 GGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003742 4 - 183735486 GGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94097 4 +    698298 GGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518542 4 - 121039945 GGTG
i nomLeu3.chr6             C 0 T 171
s macFas5.chr6             181203358 4 - 181584905 AGTG
i macFas5.chr6             I 2 C 0
s cerAty1.NW_012009470v1      212736 4 -  16742782 AGTG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      110514 4 -    438239 AGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149176 4 -    514179 AGTG
i colAng1.NW_012118799v1   I 2 C 0
s calJac3.chr2             203796783 4 + 204313951 GGTG
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521912 3 -  91010382 I
e macNem1.NW_012012389v1      198215 214 -   1764207 T
e rheMac8.chr6             179472233 214 - 180051392 T

a score=7416.000000
s hg38.chr5_KI270793v1_alt     16250 2 +    126136 TG
s panTro5.chr5             181282011 2 - 181907262 TG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003746 2 - 183735486 TG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94101 2 +    698298 TG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518375 2 - 121039945 TG
i nomLeu3.chr6             T 171 C 0
s macFas5.chr6             181203362 2 - 181584905 TG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      212740 2 -  16742782 TG
i cerAty1.NW_012009470v1   C 0 T 220
s manLeu1.NW_012110441v1      110518 2 -    438239 TG
i manLeu1.NW_012110441v1   C 0 T 220
s colAng1.NW_012118799v1      149180 2 -    514179 TG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796787 2 + 204313951 TA
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90521912 3 -  91010382 I
e macNem1.NW_012012389v1      198215 214 -   1764207 T
e rheMac8.chr6             179472233 214 - 180051392 T

a score=6314.000000
s hg38.chr5_KI270793v1_alt     16252 3 +    126136 TGC
s panTro5.chr5             181282013 3 - 181907262 TGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003748 3 - 183735486 TGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94103 3 +    698298 TGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518377 3 - 121039945 TGC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181203364 3 - 181584905 TGC
i macFas5.chr6             C 0 T 277
s colAng1.NW_012118799v1      149182 3 -    514179 TGC
i colAng1.NW_012118799v1   C 0 T 201
s calJac3.chr2             203796789 3 + 204313951 TAT
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110520 220 -    438239 T
e chlSab2.chr4              90521912 3 -  91010382 I
e cerAty1.NW_012009470v1      212742 220 -  16742782 T
e macNem1.NW_012012389v1      198215 214 -   1764207 T
e rheMac8.chr6             179472233 214 - 180051392 T

a score=789.000000
s hg38.chr5_KI270793v1_alt     16255 4 +    126136 AACA
s panTro5.chr5             181282016 4 - 181907262 AACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003751 4 - 183735486 AACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94106 4 +    698298 AACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518380 4 - 121039945 AACA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181203090 4 - 181584905 GACT
i macFas5.chr6             T 277 C 0
s calJac3.chr2             203796792 1 + 204313951 --T-
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      110520 220 -    438239 T
e chlSab2.chr4              90521912 3 -  91010382 I
e cerAty1.NW_012009470v1      212742 220 -  16742782 T
e colAng1.NW_012118799v1      149185 201 -    514179 T
e macNem1.NW_012012389v1      198215 214 -   1764207 T
e rheMac8.chr6             179472233 214 - 180051392 T

a score=76941.000000
s hg38.chr5_KI270793v1_alt     16259 18 +    126136 GTGTGCAGGGAGTGTACA
s panTro5.chr5             181282020 18 - 181907262 GTGTGTAGGGGGTGTACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003755 18 - 183735486 GTGTGTAGGGGGTGTACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94110 18 +    698298 GTGTGCAGGGGGTGTACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518384 17 - 121039945 GTGTGCAGGG-GTGTACA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472019 17 - 180051392 GTGTGCA-GGGGTATACA
i rheMac8.chr6             T 214 C 0
s macFas5.chr6             181203094 17 - 181584905 ATGTGCG-GGGGTGTGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198001 17 -   1764207 GTGTGCA-GGGGTGTACA
i macNem1.NW_012012389v1   T 214 C 0
s cerAty1.NW_012009470v1      212522 17 -  16742782 GTGTGCA-GGGGTATACA
i cerAty1.NW_012009470v1   T 220 C 0
s chlSab2.chr4              90521915 18 -  91010382 GTGTGCAGGGGGTATACA
i chlSab2.chr4             I 3 C 0
s manLeu1.NW_012110441v1      110300 17 -    438239 GTGTGCA-GGGGTATACA
i manLeu1.NW_012110441v1   T 220 C 0
s colAng1.NW_012118799v1      148984 18 -    514179 GTGTGCAGGGGGTATACA
i colAng1.NW_012118799v1   T 201 C 0
s calJac3.chr2             203796793 11 + 204313951 -------GGGAGTATGCA
i calJac3.chr2             C 0 I 113
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=6600.000000
s hg38.chr5_KI270793v1_alt     16277 1 +    126136 C
s panTro5.chr5             181282038 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003773 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94128 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518401 1 - 121039945 C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472036 1 - 180051392 C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203111 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198018 1 -   1764207 C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212539 1 -  16742782 C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90521933 1 -  91010382 C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110317 1 -    438239 C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149002 1 -    514179 C
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796804 113 + 204313951 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=241763.000000
s hg38.chr5_KI270793v1_alt     16278 48 +    126136 AA-GGTGTGTGCAGGAGGTGTGTGCAGAGGTGTGTGCAGGAG-GTATACA
s panTro5.chr5             181282039 48 - 181907262 AA-GGTGTGTGCAGGAGGTGTGTGCAGAGGTGTGTGCAGGAG-GTATACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003774 48 - 183735486 AA-GGTGTGTGCAGGAGGTGTGTGCAGAGGTGTGTGCAGGAG-GTATACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94129 48 +    698298 AA-GGTGTGTGCAGGAGGTATGTGCAGAGGTGTGTGCAGGAG-GTATACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518402 14 - 121039945 AA-GGTGTGTGCAGG-----------------------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472037 48 - 180051392 AG-GGTGTGTGCAGGAGATGTGTGCATAGGTGTGTGCAGGGG-GTATACA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203112 49 - 181584905 AACAGTGTGTGCAGGAGGTTTGTGCAGAGG-GTGTGCAGGGGTATACACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198019 48 -   1764207 AG-GGTGTGTGCAGGAGATGTGTGCATAGGTGTGTGCAGGGG-GTATACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212540 48 -  16742782 AG-GGTGTGTGCAGGAGATGTGTGCATAGGTGTGTGCAGGGG-GTATACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90521934 48 -  91010382 AG-GGTGTGTGCAGGAGATGTGTGCATAGGTGTGTGCAGGGG-GTATACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110318 48 -    438239 AC-GGTGTGTGCAGGAGATGTGTGCATAGGTGTGTGCAGGGG-GTATACA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149003 48 -    514179 AG-GGTGTGTGCAGGAGATGTGTGCATAGGTGTGTTCAGGGG-GTATACA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796917 48 + 204313951 AG-GGTATGTTCAGAAGGTGTGTGCAGAGGTGTGTGCAGGGG-GTATATA
i calJac3.chr2             I 113 T 123
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=42611.000000
s hg38.chr5_KI270793v1_alt     16326 9 +    126136 TGGTGTGTG
s panTro5.chr5             181282087 9 - 181907262 TGGTGTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003822 9 - 183735486 TGGTGTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94177 9 +    698298 TGGTGTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179472085 9 - 180051392 CGGTGTGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203161 9 - 181584905 GGGTGTGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198067 9 -   1764207 CGGTGTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212588 9 -  16742782 CGGTGTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90521982 9 -  91010382 CGGTGTGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110366 9 -    438239 CGGTGTGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149051 9 -    514179 CGGTGTGTG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796965 123 + 204313951 T
e canFam3.chr34             11685982 2001 +  42124431 I
e nomLeu3.chr6             120518416 0 - 121039945 C

a score=35383.000000
s hg38.chr5_KI270793v1_alt     16335 6 +    126136 AAGGTA
s panTro5.chr5             181282096 6 - 181907262 AAGGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003831 6 - 183735486 AAGGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94186 6 +    698298 AAGGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518416 5 - 121039945 -AGGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472094 6 - 180051392 AAGGTG
i rheMac8.chr6             C 0 I 139
s macFas5.chr6             181203170 6 - 181584905 CAGGAG
i macFas5.chr6             C 0 I 3
s macNem1.NW_012012389v1      198076 6 -   1764207 AAGGTG
i macNem1.NW_012012389v1   C 0 I 139
s cerAty1.NW_012009470v1      212597 6 -  16742782 AAGGTG
i cerAty1.NW_012009470v1   C 0 I 139
s chlSab2.chr4              90521991 6 -  91010382 AAGGTG
i chlSab2.chr4             C 0 I 64
s manLeu1.NW_012110441v1      110375 6 -    438239 AAGGTG
i manLeu1.NW_012110441v1   C 0 I 139
s colAng1.NW_012118799v1      149060 6 -    514179 AAGGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796842 6 + 204313951 AGGGTG
i calJac3.chr2             T 123 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=29499.000000
s hg38.chr5_KI270793v1_alt     16341 5 +    126136 TGTGT
s panTro5.chr5             181282102 5 - 181907262 TGTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003837 5 - 183735486 TGTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94192 5 +    698298 TGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518421 5 - 121039945 TGTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472239 5 - 180051392 TGTGC
i rheMac8.chr6             I 139 C 0
s macFas5.chr6             181203179 5 - 181584905 TGTGC
i macFas5.chr6             I 3 I 183
s macNem1.NW_012012389v1      198221 5 -   1764207 TGTGC
i macNem1.NW_012012389v1   I 139 C 0
s cerAty1.NW_012009470v1      212742 5 -  16742782 TGTGC
i cerAty1.NW_012009470v1   I 139 C 0
s chlSab2.chr4              90522061 5 -  91010382 TGTGC
i chlSab2.chr4             I 64 C 0
s manLeu1.NW_012110441v1      110520 5 -    438239 TGTGC
i manLeu1.NW_012110441v1   I 139 C 0
s colAng1.NW_012118799v1      149066 5 -    514179 TGTGT
i colAng1.NW_012118799v1   C 0 I 114
s calJac3.chr2             203796848 5 + 204313951 GGTGC
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=515858.000000
s hg38.chr5_KI270793v1_alt     16346 90 +    126136 AGAGGTGTGTGCAGGGGGTATACACAGGGTTTGTGCAGAGGATGTGTGAGGGAGTTGTGTGCAGGGGATCTGTGCAGGGAGTGTACACAG
s panTro5.chr5             181282107 90 - 181907262 AGAGGTGTGAGCAGGGGGTATACACAGGGTTTGTGCAGAGGATGTGTGAGAGAGGTGTGTGCAGGGGATCTGTGCAGGGAGTGTACACAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003842 90 - 183735486 AGAGGTGTGAGCAGGGGGTATACACAGGGTTTGTGCAGAGGATGTGTGAGAGAGGTGTGTGCAGGGGATCTGTGCAGGGAGTGTACACAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94197 90 +    698298 AGAGGTGTGTGCAGGGGGTATACACAGGGTTTGTGCAGAGGATGTGTGCGGGAGGTGTGTGCAGGGGATCTGTGCACGGAGTGTACACAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518426 90 - 121039945 AGAGGTGTGTACAGGGGGTATACGCAGGGTTTGTGCAGAGGATGTGTGTGGGAGGTGTGTGCAGGGGATCTGTGCAGGGAGTGTGCACAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472244 88 - 180051392 AGAGGTGTGTGCAGGGGGTATACACAGGA-TTGTGCAAGAGGCGTGTGCAGGAGGTGTGTGCAGGGGATATGTGCA-GGAGTGTACACAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203367 88 - 181584905 AGAGGTGTGTGCAGGGGGTATACACAGGA-TTGTGCAAGAGGCGTGTGCAGGAGGTGTGTGCAGGGGATATGTGCA-GGAGTGTACACAG
i macFas5.chr6             I 183 C 0
s macNem1.NW_012012389v1      198226 88 -   1764207 AGAGGTGTGTGCAGGGGGTATACACAGGA-TTGTGCAAGAGGCGTGTGCAGGAGGTGTGTGCAGGGGATATGTGCA-GGAGTGTACACAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212747 88 -  16742782 AGAGGTGTGTGCAGGGGGTATACACAGGA-TTGTGCAAGAGGCGTGTGCAAGAGGTGCGTGCAGGGGATATGTGCA-GGAGTGTACACAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522066 88 -  91010382 AGAGGTGTGTGCAGCGGGTATACACAGGA-TTGTGCAAGAGGCGTGTGCAGGAGGTGTGTGCAGGGGATATGTGCA-GGAGTGTACACAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110525 88 -    438239 AGAGGTGTGTGCAGGGGGTATACACAGGA-TTGTGCAAGAGGCGTGTGCAAGAGGTGCATGCAGGGGATATGTGCA-GGAGTGTACACAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149185 88 -    514179 AGAGGTGTGTGCAGGGGGTATACACAGGA-TTGTGCAAGAGGTGTGTGCAGGAGGTGTGTGCAGGGGATATGTGCG-GGAGTGTACACAG
i colAng1.NW_012118799v1   I 114 C 0
s calJac3.chr2             203796853 90 + 204313951 AGGGGTGTGTGCAGGAGGTGTGTGCAGGGGATATACACAGGGTGTGTGCAGGAGGTGTGTGCAGAGGGTATGTTCAGAAGGTGTGTGCAG
i calJac3.chr2             C 0 I 22
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=64009.000000
s hg38.chr5_KI270793v1_alt     16436 11 +    126136 GCTGTGTGCAG
s panTro5.chr5             181282197 11 - 181907262 GCTGTGTGCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003932 11 - 183735486 GCTGTGTGCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94287 11 +    698298 GCTATGTGCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518516 11 - 121039945 GCTGTGTGCAG
i nomLeu3.chr6             C 0 I 19
s rheMac8.chr6             179472332 11 - 180051392 GCTGTGTGTAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203455 11 - 181584905 GCTGTGTGTAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198314 11 -   1764207 GCTGTGTGTAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212835 11 -  16742782 GCTGTGTGTAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522154 11 -  91010382 GCTGTGTGTAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110613 11 -    438239 GCTGTGTGTAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149273 11 -    514179 GCTGTGTGTAG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796943 22 + 204313951 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=17761.000000
s hg38.chr5_KI270793v1_alt     16447 6 +    126136 GGGGTA
s panTro5.chr5             181282208 6 - 181907262 GGGGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003943 6 - 183735486 GGGGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94298 6 +    698298 GGGGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179472343 6 - 180051392 AGGTTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203466 6 - 181584905 AGGTTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198325 6 -   1764207 AGGTTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212846 6 -  16742782 AGGTTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522165 6 -  91010382 AGATTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110624 6 -    438239 AGGTTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149284 6 -    514179 AGGTTA
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796943 22 + 204313951 I
e canFam3.chr34             11685982 2001 +  42124431 I
e nomLeu3.chr6             120518527 19 - 121039945 I

a score=55656.000000
s hg38.chr5_KI270793v1_alt     16453 19 +    126136 TGTGCAACAGTGTGCAGGG
s panTro5.chr5             181282214 19 - 181907262 TGTGCAACAGTGTGCAGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003949 19 - 183735486 TGTGCAACAGTGTGCAGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94304 19 +    698298 TGTGCAGTAGTGTGCAGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518546 19 - 121039945 TGTGCAACAGTGTGCAGGG
i nomLeu3.chr6             I 19 C 0
s rheMac8.chr6             179472349  9 - 180051392 ----------TGTGCAGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203472  9 - 181584905 ----------TGTGCAGGG
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      198331  9 -   1764207 ----------TGTGCAGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212852  9 -  16742782 ----------TGTGCAGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522171  9 -  91010382 ----------TGTGCAGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110630  9 -    438239 ----------TGTGCAGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149290  9 -    514179 ----------TGTGCAGGG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796943 22 + 204313951 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=5500.000000
s hg38.chr5_KI270793v1_alt     16472 1 +    126136 G
s panTro5.chr5             181282233 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003968 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94323 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518565 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472358 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      198340 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212861 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522180 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110639 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149299 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796943 22 + 204313951 I
e canFam3.chr34             11685982 2001 +  42124431 I
e macFas5.chr6             181203481 1 - 181584905 I

a score=6600.000000
s hg38.chr5_KI270793v1_alt     16473 1 +    126136 G
s panTro5.chr5             181282234 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003969 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94324 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518566 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472359 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203482 1 - 181584905 G
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      198341 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212862 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522181 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110640 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149300 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393 8 -   2165740 I
e cebCap1.NW_016108158v1       35347 134 +    298490 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796943 22 + 204313951 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=104878.000000
s hg38.chr5_KI270793v1_alt     16474 18 +    126136 GGTGTGTGCAGAGGTGTG
s panTro5.chr5             181282235 18 - 181907262 AGTGTGTGCAGAGGTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003970  8 - 183735486 AGTGTGTG----------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94325 18 +    698298 AGTGTGTGCAGAGGTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518567 18 - 121039945 AGTATGTGCAGAGGTGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472360 18 - 180051392 AGTGTGTACAGAGGTGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203483 18 - 181584905 AGTGTGTACAGAGGTGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198342 18 -   1764207 AGTGTGTACAGAGGTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212863 18 -  16742782 AGTGTGTACAGAGGTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522182 18 -  91010382 AGTGTGTACAGAGGTGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110641 18 -    438239 AGTGTGTACAGAGGTGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149301 18 -    514179 AGTGTGTACAGAGGTGTG
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       35481 18 +    298490 ggtgtgtgcagaggtgtg
i cebCap1.NW_016108158v1   I 134 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e saiBol1.JH378155          15956189 2469 +  16417988 M
e calJac3.chr2             203796943 22 + 204313951 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=103295.000000
s hg38.chr5_KI270793v1_alt     16492 18 +    126136 TGCAGGGGGTGTACACAG
s panTro5.chr5             181282253 18 - 181907262 TGCAGGGGGTGTACACAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003978  3 - 183735486 ---------------CAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94343 18 +    698298 TGCAGGGGGTATACACAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518585 18 - 121039945 TGCAGGGGGTATACACAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472378 18 - 180051392 TGCAGGGGGTGTACACAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203501 18 - 181584905 TGCAGGGGGTGTACACAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198360 18 -   1764207 TGCAGGGGGTGTACACAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212881 18 -  16742782 TGCAGGGGGTGTACACAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522200 18 -  91010382 TGCAGGGGGTGTACACAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110659 18 -    438239 TGCAGGGGGTGTACACAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149319 18 -    514179 TGCAGGGGGTGTACACAG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15958663 16 +  16417988 TGCAGGGGGCATACGG--
i saiBol1.JH378155         M 2469 C 0
s cebCap1.NW_016108158v1       35499 16 +    298490 tgcaggggGTATACGG--
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393  8 -   2165740 I
e calJac3.chr2             203796943 22 + 204313951 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=1026678.000000
s hg38.chr5_KI270793v1_alt     16510 122 +    126136 AGGGTGGTGGCAGGCGGTGGATGCAAGGCTGCATCTGTTCAGCCCAAGACGTTCCATTGGTCCAGTGGTGTTAGAGCACATTTGGTCAGGTTGCCTTCATGGGATATTTGACAAGCTGCAAA
s panTro5.chr5             181282271 122 - 181907262 AGGGTGGTGGCAGGCGGTGGATGCAAGGCTTCATCTGTTCAGCCCAAGACGTTCCGTTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGGTTGCCTTCATGGGATATTTGACAAGCTGCAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183003981 122 - 183735486 AGGGTGGTGGCAGGCAGTGGATGCAAGGCTTCATCTGTTCAGCCCAAGACGTTCCGTTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGGTTGCCTTCATGGGATATTTGACAAGCTGCAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94361 122 +    698298 AGGGTGGTGGCAGGCAGTGGATGCAAGGCTGCATCTGTTCAGCCCAAGACGTTCCGCTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGATTGCCTTCATGGGATATTTGACAAGCTGCAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518603 122 - 121039945 AGGGTGGTGGCTGGCGGTGGATGCAAGGCTGCATCTGTTCAGCCCAAGACGTTCCCTTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGATTGCCTTCATCGGATATTTGACAAGCTGCAAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472396 121 - 180051392 TTGGTGGTGGCAGACGGTGGATGCAAGGCTGCATCTGGTCAGCCCAGGACATTCTCTTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGATTGCC-TCATCAGATATTTGACAAGCTGCAAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203519 121 - 181584905 TGGGTGGTGGCAGACGGTGGATGCAAGGCTGCATCTGGTCAGCCCAGGACGTTCTCTTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGATTGCC-TCATCAGATATTTGACAAGCTGCAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198378 121 -   1764207 TGGGTGGTGGCAGACGGTGGATGCAAGGCTGCATCTGGTCAGCCCAGGACGTTCTCTTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGATTGCC-TCATCAGATATTTGACAAGCTGCAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      212899 121 -  16742782 TGGATGGTGGCAGACGGAGGATGCAAGGCTGCATCTGGTCAGCCCAGGACGTTCTCTTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGATTGCC-TCATCAGATATTTGACAAGCTGCAAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522218 121 -  91010382 TGGGTGGTGGCAGACAGTGGATGCAAGGCTGCATCTGGTCAGCCCAGGACATTCTCTTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGATTGCC-TCATCAGATATTTGACAAGCTGCAAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110677 121 -    438239 TGGATGGTGGCAGACGGAGGATGCAAGGCTGCATCTGGTCAGCCCAGGACGTTCTCTTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGATTGCC-TCATCAGATATTTGACAAGCTGCAAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149337 122 -    514179 TGGGTGGTGGCAGACGGTGGATGCAAGGCTGCATCTGCTCAGCCCAGGACGTTCTCTTGGTCCAGTGGTGTTAGAGCACATTTGGCCAGATTGCCTTCATCGGATATTTGACAAGCTGCAAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203796965 121 + 204313951 GGGGTGGTGGCAGATGGTGGATGCAGGGCTGCATCTGATCAGCCCAGGACGTTCTCTTGGCCCACTGGTGTTAGAGTACATTTAGCC-AATTGCCCTTGTCTGATATTTGACAAGCTGCAAA
i calJac3.chr2             I 22 C 0
s saiBol1.JH378155          15958679 121 +  16417988 GGGGTGGTGGCAGATGGTGGATGCGGGGCTGCATCTGGTCAGCCCAGGACGTTCTCTTGGCCCACTGGTGTTAGAGTACATTTGGCC-AATTGCCCTCATCTGATATTTGACAAGCTGCAAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       35515 122 +    298490 GGGGTGGTGGCAGATGGTGGATGCAGGGCTGCATCTGGTCAGCCCAGGACGTTCTCTTGGCCCACTGGTGTTAGAGTACATTTGGCCGGATTGCCCTCATCTGATATTTGACAAGCTGCAAA
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e otoGar3.GL873745           1844393   8 -   2165740 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=766878.000000
s hg38.chr5_KI270793v1_alt     16632  97 +    126136 CCCGAGGGCATGCTGGTGCCCGAGGGCGCCTCCGTGCTGACCTCAGCATGTGCAGCAAGAGCCAGGGCACAGGG----GCGGCCTGGCCCATTTCAGGCAG
s panTro5.chr5             181282393  97 - 181907262 CGCGAGGGCATGCTGGTGTCCGAGGGCGCCTCCGTGCTGACCTCAGCATGTGCAGCAAGAGCCAGGGCACGGGG----GTGGCCTGGCCCATCTCAGGCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183004103  97 - 183735486 CGCGAGGGCATGCTGGTGTCCGAGGGCGCCTCCGTGCTGACCTCAGCATGTGCAGCAAGAGCCAGGGCACGGGG----GTGGCCTGGCCCATCTCAGGCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94483 100 +    698298 CCCGAGGGCATGCTGGTGTCCGAGGGCGCCTCCGTGCTGACCTCAGCATGTGCGGCAAGAGCCAGGGCACGGGGG-GCGGGGCCTGGCCCATCTCAGGCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518725  98 - 121039945 CCCGAGGGCGTGCTGGTGTCTGAGGGCGCCTCTGTGCTGACCTCAGCATGTGCAGCAAGAGCCAGGGCACGGGGG---GCGGCCTGGCCCATCTCAGGCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472517  94 - 180051392 CCCGAGGGCATGCTGGTGTCCGAGGGTGCCTCTGTGCTGACCTCAGCATGTGCAGCAAGAGCCAAGGCATG-------GCGGCCTGGCCCATCTCAGGCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203640  94 - 181584905 CCCGAGGGCATGCTGGTGTCCGAGGGTGCCTCTGTGCTGACCTCAGCATGTACAGCAAGAGCCAAGGCACG-------GCAGCCTGGCCCATCTCAGGCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198499  94 -   1764207 CCCGAGGGCATGCTGGTGTTCGAGGGTGCCTCTGTGCTGACCTCAGCATGTGCAGCAAGAGTCAAGGCACG-------GCGGCCTGGCCCATCTCAGGCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      213020  94 -  16742782 CCTGAGGGCATGCTGGTGTCTGAAGGTGCCTCTGTGCTGACCTCAGCATGTGCAGCAAGAGCCAAGGCACG-------GCAGCCTGGCCCATCTCAGGCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522339  94 -  91010382 CCCGAGGGCATGCTGGTGTCCGAGGGTGCCTCTGTGCTGACCTCAGCATGTGCAGCAAGAGCCAAGGCACG-------GCAGCCTGGCCCATCTCAGGCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      110798  94 -    438239 CCCGAGGGCATGCTGGTGTCCGAGGGTGCCTCTGTGCTGACCTCAGCATGTGCAGCAAGAGCCAAGGCACG-------GCAGCCTGGCCCATCTCAGGCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149459  94 -    514179 CCTGAGGGCATGCTGGTGTCTGAGGGTGTCTCTGTGCTGACCTCAGCATGTGCAGCAAGAGCCAAGGCACG-------GCAGCCTAGCCCATCTCAGGCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203797086  92 + 204313951 CCCAAGGGCATGCTGGTGTCTGAGGGCGCCTCTGTGCTGACCTCGGCGTGTGCAGCAAGAGACCGGGCACC-------ATGGCCT-GCCTGTCTCAGGCA-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15958800  92 +  16417988 CCCAAGGGCATGCTGGTGTCCGAGGGCACCTCTGTGCTGACCTCAGCATGTGCAGCAAGAGCCCGGACACC-------GTGGCCT-GCCTGTCTCAGGCA-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       35637  92 +    298490 CCCAAGGGCATGCTGGTGTCCAGGGGCACCTCTGTGCTGACCTCAGCGTGTGCAGCAAGAGCCCGGGCACC-------GTGGTCT-GCCTGTCTCGGGCA-
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1844401  83 -   2165740 CCTGAGGACTTGCCTACCTCAGAGAG-GCTTCTGGGTTTGCATCTG-------AGCAAGGGCCCGGGGCCCAGGAGGCACAGGCTGGCT--------GC--
i otoGar3.GL873745         I 8 C 0
e aotNan1.NW_018503740v1    25352194 14659 -  25620257 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=5926188.000000
s hg38.chr5_KI270793v1_alt     16729 646 +    126136  
s panTro5.chr5             181282490 646 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183004200 646 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       94583 646 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120518823 615 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179472611 634 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181203734 634 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      198593 634 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      213114 634 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90522433 634 -  91010382  
i chlSab2.chr4             C 0 I 319
s manLeu1.NW_012110441v1      110892 634 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      149553 646 -    514179  
i colAng1.NW_012118799v1   C 0 I 316
s calJac3.chr2             203797178 624 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15958892 617 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       35729 620 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25366853 596 -  25620257  
i aotNan1.NW_018503740v1   I 14659 C 0
s otoGar3.GL873745           1844484 586 -   2165740  
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11685982 2001 +  42124431 I

a score=77520.000000
s hg38.chr5_KI270793v1_alt     17375 7 +    126136 AGAAAAT
s panTro5.chr5             181283136 7 - 181907262 AGAAAAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183004846 7 - 183735486 AGAAAAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95229 7 +    698298 AGAAAAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120519438 7 - 121039945 AGAAAAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179473245 7 - 180051392 AGAAAAT
i rheMac8.chr6             C 0 I 318
s macFas5.chr6             181204368 7 - 181584905 AGAAAAT
i macFas5.chr6             C 0 I 321
s macNem1.NW_012012389v1      199227 7 -   1764207 AGAAAAT
i macNem1.NW_012012389v1   C 0 I 316
s cerAty1.NW_012009470v1      213748 7 -  16742782 AGAAAAT
i cerAty1.NW_012009470v1   C 0 I 319
s chlSab2.chr4              90523386 7 -  91010382 agaaaaT
i chlSab2.chr4             I 319 C 0
s manLeu1.NW_012110441v1      111526 7 -    438239 AGAAAAT
i manLeu1.NW_012110441v1   C 0 I 316
s colAng1.NW_012118799v1      150515 7 -    514179 agaaaaT
i colAng1.NW_012118799v1   I 316 C 0
s calJac3.chr2             203797802 7 + 204313951 AGAAAAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15959509 7 +  16417988 AGAAAAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       36349 7 +    298490 AGAAAAT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25367449 7 -  25620257 AGAAAAT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1845070 0 -   2165740 C
e canFam3.chr34             11685982 2001 +  42124431 I

a score=647334.000000
s hg38.chr5_KI270793v1_alt     17382 72 +    126136 ATAGACACTACAGAAGGGCACCGAGATTCGATATGCCGCCCTGCTGAGATAACCCACACTAACATGCCCACA
s panTro5.chr5             181283143 72 - 181907262 ATAGACACTACAGAAGGGCACCGAGATTCGATATGCCGCCCTGCTGAGATAACCCACACTAACATGCCCACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183004853 72 - 183735486 ATAGACACTACAGAAGGGCACCGAGATTCGATATGCCGCCCTGCTGAGATAACCCACACTAACATGCCCACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95236 72 +    698298 ATAGACACTACAGAAGGGCACCGAGATTCGATATGCCGCCCTGCTGAGGTAACCCACACTAACATGCCCACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120519445 71 - 121039945 AC-GACACTACAGAAGGCCACCGAGATTTGATATGCCGCCGTGCTGAGATAACCCGCGCTAACACGCCCTCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179473570 72 - 180051392 ATAGACACTACAGAAGGGCACCAAGATTCGATATGCCGCCCTACTGAGTTAACCGACACTAACATGCCCACA
i rheMac8.chr6             I 318 C 0
s macFas5.chr6             181204696 72 - 181584905 ATAGACACTACAGAAGGGCACCAAGATTCGATATGCCGCCCTACTGAGTTAACCCACACTAACGTGCCCACA
i macFas5.chr6             I 321 C 0
s macNem1.NW_012012389v1      199550 72 -   1764207 ATAGACACTACAGAAGGGCACCAAGATTCGATATGCCGCCCTACTGAGTTAACCCACACTAACATGCCCACA
i macNem1.NW_012012389v1   I 316 C 0
s cerAty1.NW_012009470v1      214074 72 -  16742782 ATAGACACTACAGAAGGGCACCAAGATTTGATATGCCGCCCTACTGAGTTAACCCACGCTAACATGCCCACA
i cerAty1.NW_012009470v1   I 319 C 0
s chlSab2.chr4              90523393 72 -  91010382 ATAGACACTACAGAAGGGCACCAAGATTCGATATGCCGCCCTACTGAGTTAACCCACACTAGCATGCCCACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      111849 72 -    438239 ATAGACACTACAGAAGGGCACCAAGATTTGATATGCCGCCCTACTGAGTTAACCCACGCTAACATGCCCACA
i manLeu1.NW_012110441v1   I 316 C 0
s colAng1.NW_012118799v1      150522 72 -    514179 ATAGACACTACAGAAGGGCACCAAGATTCGATATGCTGCCCTACTGAGTTAACCCACACTAACATGCCCACA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203797809 72 + 204313951 ATACACACCACAGAAGGGAACCCAGATGAGAGGTGCCGCCCTGCTGAGATAACCCACCCCAGCGTGCCCACG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15959516 72 +  16417988 ATAGACACTACAGAAGGGAACCCAGATGAGAGGTGCCACCCTGCTGAGATAACCCACCTCAGCATTCCCACG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       36356 72 +    298490 ATAGACGCTACAGAAGGGAACCCAGATGAGAGGTGCCGCCCTGCTGAGATAACCCACCCCAGCATGCCCATG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25367456 72 -  25620257 ACACACACTACAGAAGGGAGCCCAGACGAGAGGTGCCGCCCTGCTGAGAAAACCCACCGCAGCGTGCCCACG
i aotNan1.NW_018503740v1   C 0 I 34
s otoGar3.GL873745           1845070 42 -   2165740 ------------------------------ACAAGCTGCCACTCAGAGACAAGCAGCACTCACACTCCCACA
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11685982 2001 +  42124431 I

a score=280578.000000
s hg38.chr5_KI270793v1_alt     17454 38 +    126136 TGTATCCTGCAGGTGTTT-TTCAAGCCTGTGCGTATTGA
s panTro5.chr5             181283215 38 - 181907262 TGTATCCTGCAGGTGTTT-TTCAAGCCTGTGCGTATTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183004925 38 - 183735486 TGTATCCTGCAGGTGTTT-TTCAAGCCTGTGCGTATTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95308 38 +    698298 TGTATCCTGCAGGTGTTT-TTCAAGCCTGTGCGTATTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120519516 38 - 121039945 TGTATCCTGCAGGTGTTT-CTCGAGCCTGTGCGTATTGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179473642 38 - 180051392 TGTCTCCTGCAGGTGTTT-CTCAAGCCTGTGCATATTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181204768 38 - 181584905 TGTATCCTGCAGGTGTTT-CTCAAGCCTGTGCGTATTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      199622 38 -   1764207 TGTATCCTGCAGGTGTTT-CTCAAGCCTGTACATATTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214146 38 -  16742782 TGTATCCTGCAGGTGTTT-CTCAAGCCTGTGCGTATTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90523465 38 -  91010382 TGTATCCTGCAGGTGTTT-CTCAAGCCTGTGCGTGTTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      111921 38 -    438239 TGTATCCTGCAAGTGTTT-CTCAAGCCTGTGCGTATTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      150594 38 -    514179 TGTATCCTGCAGGTGTTT-CTCAAGCCTGTGTGTATTGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203797881 34 + 204313951 ---GTCCCGCAG--TTTTCCTCAGATGTGTGCGCATTCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15959588 36 +  16417988 ---GTCCTGCAAGCGTTTCCTCAGATCTGTGCGCATTCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       36428 36 +    298490 ---GTCCTGCAAGTGTTTCCTCAGATCTGTGCGCATTCA
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1845112 29 -   2165740 ---------CACAGGTTC-CTGTGAGCTGTGCTTATTAG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25367528 34 -  25620257 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=1702323.000000
s hg38.chr5_KI270793v1_alt     17492 178 +    126136 -CAGTCATGAGGCTATGCTAAGCATTGCCGGATGCAT--CTGCCACTAAGTAGTCTTTAACGTTGTTTATTAAA---CA--CTTTTAATGGTCACGTTAGATCATAAACCAAACCCAACTTTA-TTATCCTGTCTTCTGCTGCTGAAAGTTGTGTCTGTCTCCACTTCCTCACGGTGCTCACTCTGG
s panTro5.chr5             181283253 178 - 181907262 -CAGTCATGAGGCTATGCTAAGCATTGCCGTATGCAT--CTGCCACTAAGTAGTCTTTAACGTTGTTTATTAAA---CA--CTTTTAATGGTCACGTTAGATCATAAACCAAACCCAACCTTA-TTATCCTGTCTTCTGCTGCTGAAAGTTGTGTCTGTCTCCACTTCCTCACGGTGCTCACTCTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183004963 178 - 183735486 -CAGTCATGAGGCTATGCTAAGCATTGCCGTATGCAT--CTGCCACTAAGTAGTCTTTAACGTTGTTTATTAAA---CA--CTTTTAATGGTCACGTTAGATCATAAACCAAACCCAACCTTA-TTATCCTGTCTTCTGCTGCTGAAAGTTGTGTCTGTCTCCACTTCCTCACGGTGCTCACTCTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95346 178 +    698298 -CAGTCATGAGGCTATGCTAAGCATTGCCATATGCAT--CTGCCACTAAGTAGTCTTTAACGTTGTTTATTAAA---CA--CTTTTAATGGTCATGTTAGATCATAAACCAAACCCAACTTTA-TTATCCTGTCTTCTGCTGCTGAAAGTTGTGTCTGTCTCCACTTCCTCACGGTGCTTACTCTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120519554 178 - 121039945 -CAGTCATGAGGTTATGCTAAGCATTGCCATATGTAT--CTGCCACTAAGTAGCCTTTAACATTGATTATTAAA---CA--CTTTTAATGGTTACGTTACACCATAAACCAAACCCAACTTTA-TCGTCCTGTCTTCTGCTGCTGAACGTTGTGTCTGCGTCCACTTCCTCACGGTGCTCACTCTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179473680 178 - 180051392 -CAGTCATGAGGTTATGCTAAGCATTGCCGTATGTAT--CTGCCACTGTGTAGTCTTCAACGTTGTTTATTAAA---CA--CTTTTAATGGTCACGTTAGATCATAAACCAAACCCAACTTTA-TTATCCTGTCTTCTGCGGCTAAACGTTGTGTCTGTCTCCACTTCCTCATGGTGCTTACCTTGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181204806 178 - 181584905 -CAGTCATGAGGTTATGCTAAGCATTGCCGTATGTAT--CTGCCACTGTGTAGTCTTCAACGTTGTTTATTAAA---CA--CTTTTAATGGTCACGTTAGATCATAAACCAAACCCAACTTTA-TTATCCTGTCTTCTGCGGCTAAACGTTGTGTCTGTCGCCACTTCCTCATGGTGCTTACCTTGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      199660 178 -   1764207 -CAGTCATGAGGTTATGCTAAGCATTGCCGTATGTAT--CTGCCACTATGTAGTCTTCAACGTTGTTTATTAAA---CA--CTTTTAATGGTCACGTTAGATCATAAACCAAACCCAACTTTA-TTATCCTGTCTTCTGCGGCTGAACGTTGTGTCTGTCTCCACTTCCTCATGGTGCTTACCTTGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214184 178 -  16742782 -CAGTCATGAGGTTATGCTAAGCATTGCCGTATGTAT--CTGCCACTATGTAGTCTTCAACGTTGTTTATTAAA---CA--TTTTTAATGGTCACGTTAGATCATAAACCAAACCCAACTTTA-TTATCCTGTCTTCTGCGGCTGAACGTTGTGTCTGTCTCCACTTCCTCATGGTGCTTACCTTGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90523503 178 -  91010382 -CAGTCATGAGGTTATGCTAAGCATTGCCGTATGTAT--CTGCCACTACGTAGTCTTTAATATTGTTTATTAAA---CA--CTTTTAATGGTCACGTTAGATCATAAACCAAACCCAACTTTA-TTATCCTGTCTTCTGCGGCTGAACGTTGTGTCTGTCTCCACTTCCTCATGGTGCTTACCTTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      111959 178 -    438239 -CAGTCATGAGGTTATGCTAAGCATTGCCGTATGTAT--CTGCCACTATGTAGTCTTCAACGTTGTTTATTAAA---CA--CTTTTAATGGTCACGTTAGATCATAAACCAAACCCAACTTTA-TTATCCTGTCTTCTGCGGCTGAACGTTGTGTCTGTCTCCACTTCCTCATGGTGCTTACCTTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      150632 178 -    514179 -CAGTCATGAGGTTATGCTAAGCATTGCCGCATGTAT--CTGCCACTACGTGGTCTTTAACATTGTTTATTAAA---CA--CTTTTAATGGTCACGTTAGATCATAAACCAAACCCAACTTTA-TTATCCTGTCTTCTGCGGGTGAACATTGTGTCTGTCTCTACTTCTTCACGGTGCTCACCTTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203797915 178 + 204313951 -CAGCCATGAGCTTATGCTGAGCATTACCACAGGTTT--CCGCCACTAAGTAGTCTTCAATGTTGCTTATTAAA----AGCATTTTAATGGTCACATTAGATCATAAACCAAACCC-ACTTTA-TTATCCCGACTCCAGCTGCTGAACATCCTATCCGTCTCCACTTCCTCATGGCGGTCACTCTGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15959624 180 +  16417988 -CAGGCATGAAGTTATGCTAAGCATTGCCACACGCTT--CTGCCACTAAGTAGTCTTTAATGTCGCTTATTAAA---CAGCATTTTAGTGGTCACATTAGAGCATAAACCAAACCCAACATTA-TCATCGCGTCTTCAGCAGCTGAACGTCGTTTCTGTCTCCACTTCTTCAAGGCGGTCACTCTGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       36464 179 +    298490 -CAGGCATGAGGTTATACTAAGCATTGCCACGCACTT--CTGCCACTAAGTAGTCTTTAATGTCACTTATTAAA---CAGCATTTTAGTGGCCACGTTAGATCATAAACCAAACCC-ACGTTA-TTATCCCGTCTTCAGCTGCTGAACGTCATGTCTGTCTCCACTTCCTCATGGCGGTCACTCTGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25367562 177 -  25620257 -CAGTCATGAGGTTATGCTAAGCATTGCCAC--GCTT--CTGCCACGAAGTAGTCTTTCGTGTCGCTTACTAAA---CAGCATTTTAATGGTCACGTTAGATCAGAAACCAAACCC-ACTTTA-TTATCCCGTCTTCAGCAGCTGAACATCGTGTCTGTCTCCACTTCCTCATGGCGGTCACTCTGT
i aotNan1.NW_018503740v1   I 34 C 0
s otoGar3.GL873745           1845141 170 -   2165740 CTAG--ATGCAGTTATGCTAAATGCAGTCATATATATAGCTGTCACTA-------TTTAACATCATTTATTGAATACCA--TTTTTAGTGGACACATTTAATCATGAGCTAGACCCAAATTTATTTAACCCATCT------GCTGGACTTCAGATCTATTGCCACTTCCTTAAAGTGGTCAGTCCAG
i otoGar3.GL873745         C 0 I 228
e canFam3.chr34             11685982 2001 +  42124431 I

a score=369273.000000
s hg38.chr5_KI270793v1_alt     17670 42 +    126136 TTGGCCAAATCATGAAGATCCATGGAGGCGCGGGAGCCTTCC
s panTro5.chr5             181283431 42 - 181907262 TTGGCCAAATCATGAAGATCCATGGAGGCGCGGGAGCCTTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005141 42 - 183735486 TTGGCCAAATCATGAAGATCCATGGAGGCGCGGGAGCCTTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95524 42 +    698298 TTGGCCAAATCATGAAGATCCATGCAGGCGCAGGAGCCTTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120519732 42 - 121039945 TTGGCCACATCGTGAAGATCCATAGAGAGGTGGGAGCCTTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179473858 42 - 180051392 TTGTCCACATCGTGAAGATCCACGGAGGCGTGGGAGCCTTCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181204984 42 - 181584905 TTGTCCACATCGTGAAGATCCACGGAGGCGCGGGAGCCTTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      199838 42 -   1764207 TTGTCCACATCGTGAAGATCCACGGAGGCGTGGGAGCCTTCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214362 42 -  16742782 TTGTCCGCATCGTGAAGATCCATGGAGGCACGGGAGCCTTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90523681 42 -  91010382 TTGGCCACATCGTGAAGATCCATGGAGGCACGGGAGCCTTCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112137 42 -    438239 TTGTCCACATCGTGAAGATCCATGGAGGTACGGGAGCCTTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      150810 42 -    514179 TTGGCCACATTGTGAAGATCTATGGAGGCGTGGGAGCCTTCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203798093 42 + 204313951 TTGGCCACATCGTGAAGATCTGTGGAGGTGTGGCAGCCTTCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15959804 42 +  16417988 CTGGCCACATTGTGAAGATCCTTGGAGACGTGGCAGCCTTCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       36643 39 +    298490 TTGGCCACGTCGT---GATCCGTGGAGGTGTGGCAGCCTTCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25367739 42 -  25620257 TTGGCCACATCGTGAAGATCCGTGGAGGCGTGGCAGCCTTCC
i aotNan1.NW_018503740v1   C 0 T 4096
e otoGar3.GL873745           1845311 228 -   2165740 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=1318185.000000
s hg38.chr5_KI270793v1_alt     17712 157 +    126136 GGCCTGGAATGGGGCAGCAAAAGCACAGAGCCGCAGAGAAGCCGGGAAAGCAAAGGCAGGGGCTG------CTGGGC-TGGGCCCCATCAGCCCCATGGCAGCGGCACCCGCACAGGCCTGGGGTCCCCAGCAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
s panTro5.chr5             181283473 157 - 181907262 GGCCTGGAGTGGGGCCGCGAAAGCACAGAGCCGCAGAGAAGCCGGGAAAGCAAAGGCAGGGGCTG------CTGGGC-TGGGCCCCATCAGCCCCATGGCAGCGGCACCCGCACAGGCCTGGGGTCCCCAGCAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005183 157 - 183735486 GGCCTGGAGTGGGGCCGCGAAAGCACAGAGCCGCAGAGAAGCCGGGAAAGCAAAGGCAGGGGCTG------CTGGGC-TGGGCCCCATCAGCCCCATGGCAGCGGCACCCGCACAGGCCTGGGGTCCCCAGCAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95566 157 +    698298 GGCCTGGAGTGGGGCCGCGAAAGCACAGAGCCGCAGAGAAGCCGGGAAAGCAAAGGCAGGGGCTG------CTGGGC-TGGGCCCCATCAGCCCCATGGCAGCGGCACCCGCACAGGCCTGGGGTCCCCAGCAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120519774 163 - 121039945 GGCCTGGAGTGGGGCCGCAAAAGCACAGAGCCACAGAGAAGCCGGGAAAGCAAAAGCAGGGGCTGAGGTGCCTGGGC-TGGGCCCCATCAGCCCCATGGCAGCGGCACCCGCACAAGCCTGGGGTCCCCAGCAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179473900 161 - 180051392 GGCCTGGAGTGGGGCCGCAAAAGCAGAGAGCCGCGGAGAAGCCTGGAAAGCGGAAAC--GGGCTGAGGTAGCTGGGC-TGGGCCCCATCAGCCCCGTGGCAGCGGCACCTGCACAGGCCTGAGGTCCCCAGCAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205026 163 - 181584905 GGCCTGGAGTGGGGCCGCAAAAGCAGAGAGCCGCGGAGAAGCCTGGAAAGCGGAAACAGGGGCTGAGGTAGCTGGGC-TGGGCCCCATCAGCCCCGTGGCAGCGGCACCTGCACAGGCCTGAGGTCCCCAGCAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      199880 163 -   1764207 GGCCCGGAGTGGGGCCGCAAAAGCAGAGAGCCGCGGAGAAGCCTGGAAAGCGGAAACAGGGGCTGAGGTAGCTGGGC-TGGGCCCCATCAGCCCCGTGGCAGCGGCACCTGCACAGGCCTGAGGTCCCCAGCAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214404 163 -  16742782 GGCCTGGAGTGGGGCCGCAAAAGCAGAGAGCCGCGGAGAAGCCTGGAAAGCGGAGACAGGGGCTGAGGTAGCTGGGC-TGGGCCCCATCAGCCCCGTGGCAGCGGCACCTGCACAGGCCTGAGGTCCCCAGCAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90523723 159 -  91010382 GGCCTGGAGTGGGGCCGCAAAAGCAGAGAGCCGCGGAGAAGCCTGGAAAGCGGAGACAGGGGCTGAGGTAGCTGGGC-TGGGCCCCATCAGCCCCATGGCAGCGGCACATGCACAGGCCTGAGGTCCCCAGCAGCAGGGATG----CTGTGGGCCCAGGGCTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112179 162 -    438239 GGCCTGGAGTGGGGCCGCAAAAGCAGAGAGCCGCGGAGAAGCCTGGAAAGCGGAAACAGGGGCTGAGGTAGCTGGGC-TGGGCCCCATCAGCCCCGTGGCAGCGGCACCTGCACAGGCCTGAGGTCCCCA-CAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      150852 163 -    514179 GGCCTGGAGTGGGGCTGCAAAAGCAGAGAGCCGTGGAGAAGCCTGGAAAGCGGAGGCAGGGGCTGAGGTAGCTGGGC-TGGGCCCCATCAGCCTCATGGCAGCAGCACCTGCACAGGCCTGAGGTCCCCAGCAGCAGGGATGCTGTCTGTGGGCCCAGGGCTCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203798135 160 + 204313951 AGCCTGGAGGGGGCCTGCAAAAGCACAGAGCCGCAGAGAAGCTGAGAAAGCAGAGGC-AGGGGTGAGGTGCCTGGGC-TGGGCCCCATCAGCCT-GTGGCAGAGGCACCCGCACAGGCCTGAAGT-CCCAGCAGCAGGGATGCTGTCTGTGGGTCCAGGTCTCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15959846 162 +  16417988 AGCCTGGAGGGGGACTGCAAAAGCACATAGCCACGGAGAAGCTGGGAAAGCAGAGGCGGGGGGTGAGGTGCCTGGGCTTGGGCCCCATCAGCCT-GTGGCAGAGGCACCCACACAGGCCTGAAGT-CCCAGCAGCAGGAACGCTATCTGTGGGTCCAGGGCTCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       36682 160 +    298490 AGCCTGGAGGGGGACTGCAAAAACACAGAGCCGCGGAGAACCTGGGAAAGCAGAGGCAGGGGGTCAGGTGCCT-GGC-TGGGCCCCATCAGCCT-ACGGCAGAGGCTTCCACACAGGCCTGAAGT-CCCAGCAGCAGGGATGCTGTCTGTGGGTCCAGGGCTCC
i cebCap1.NW_016108158v1   C 0 I 49
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=588293.000000
s hg38.chr5_KI270793v1_alt     17869 90 +    126136 TCCACAGCTTTGGGGGCTTCCTGCCAGAGGAGGGGGGTGGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCCCCAGACCTGGGCACG-CCT
s panTro5.chr5             181283630 90 - 181907262 TCCACGGCTTTGGGGGCTTCCTGCCAGAGGAGGGGGGTGGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCCCCAGACCTGGGCACG-CCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005340 90 - 183735486 TCCACGGCTTTGGGGGCTTCCTGCCAGAGGAGGGGGGTGGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCCCCAGACCTGGGCACG-CCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95723 91 +    698298 TCCACGGCTTTGGGGGCTTCCTGCCAGAGGAGGGGGGTGGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCTCCAGACCTGGGCATGCCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120519937 90 - 121039945 TCCACGGCTTTGGGGGTTTTCTGCCAGAGGAGGGGGGTGGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCCCCAGACCTGGGCACG-CCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474061 90 - 180051392 TCCACGGCTTTGGGGGCTTCCTGCCAGAGGAGGGGGCTGGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCCCCAGACCTGGGCACG-CCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205189 90 - 181584905 TCCACGGCTTTGGGGGCTTCCTGCCAGAGGAGGGGGCTGGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCCCCAGACCTGGGCACG-CCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200043 90 -   1764207 TCCACAGCTTTGGGGGCTTCCTGCCAGAGGAGGGGGCTGGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCCCCAGACCTGGGCACG-CCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214567 90 -  16742782 TCCACGGCTTTGGGGGCTTCCTGCCAGAGGAGGGGGCTGGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCCCCAGACCTGGGCACG-CCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90523882 90 -  91010382 TCCATGGCTTTGGGGGCTTCCTGCCAGAGGAGGGGGCTGGTTCTCCTGGGAAGGGCCCCAAGACAGGAGTCCCCAGACCTGGGCACG-CCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112341 89 -    438239 TCCACGGCTTT-GGGGCTTCCTGCCAGAGGAGGGGGCTGGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCCCCAGACCTGGGCACG-CCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151015 90 -    514179 TCCACGGCTTTGGGGGCTTCCTGCCAGAGGAGAGGGCTAGTTCTCCTGGGAGGGGCCCCAAGACAGGAGTCCCCAGACATGGGCACG-CCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203798295 53 + 204313951 CCTACGGCTTTG----------GCCA---------------------------GATCCTAAGACAGGAGTTCCCCTACCTGGGTACA-CCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15960008 53 +  16417988 CCTACGGCTTTG----------ACCA---------------------------GGCCCTAAGACAAGAGTCTCCATACCTGGGTACA-CCT
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e cebCap1.NW_016108158v1       36842 49 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=753672.000000
s hg38.chr5_KI270793v1_alt     17959 88 +    126136 CACCTCGGGTAGGGCCCCAACGCTTCAGCGGGTCTCACTGGCATCCCTAAACCTAGACCACAGGAGAGTGTGCTGTGCCATCATCACG
s panTro5.chr5             181283720 88 - 181907262 CACCTCGGGTAGGGCCCCAACGCTTCAGCGGGTCTCACTGGCATCCCTAACCCTAGACCACAGGAGAGTGTGCTGTGCCATCATCACG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005430 88 - 183735486 CACCTCGGGTAGGGCCCCAACGCTTCAGCGGGTCTCACTGGCATCCCTAAACCTAGACCACAGGAGAGTGTGCTGTGCCATCATCACG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95814 88 +    698298 CACCTCGGGTAGGGCCCCAACGCTTCAGCGGGTCTCACTGGCATCCCTAAACCTAGACCAGAGGAGAGTGTGCTGTGCCATCATCACG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120520027 88 - 121039945 CACCTTGGGTAGGGCCCCAACGCTTCAGCGGGTCTCACTGGCATCCCTAAACCTAGACCAGAGGAGAGTGCGCTGTGCCATCATCACG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474151 88 - 180051392 CACCTCGGGTGGGGCCCCAACGCTTCAGCGGGTCTCGCTGGCATCCCTAAACCTAGACCAGAGGAAAGTGCGTTGTGCCATGATCACC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205279 88 - 181584905 CACCTCGGGTGGGGCCCCAACGCTTCAGTGGGTCTCGCTGGCATCCCTAAACCTAGACCAGAGGAAAGTGCGTTGTGCCATGATCACC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200133 88 -   1764207 CACCTCGGGTGGGGCCCCAACGCTTCAGCGGGTCTCGCTGGCATCCCTAAACCTAGACCAGAGGAAAGTGCGTTGTGCCATGATCACC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214657 88 -  16742782 CACCTCGGGTGGGGCCCCAACGCTTCAGCGGGTCTCGCTGGCATCCCTAAACCTAGACCAGAGGAAAGTGCGTTGTACCATGATCACC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90523972 88 -  91010382 CACCTCGGGTGGGGCCCCAACGCTTCAGCGGGTCTCACTGGCATCCCTAAACCTAGACCAGAGGAAAGTGCGTTGTGCCATGATCACC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112430 88 -    438239 CACCTCGGGTGGGGCCCCAACGCTTCAGCGGGTCTCGCTGGCATCCCTAAACCTAGACCAGAGGAAAGTGCGTTGTGCCATGATCACC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151105 88 -    514179 CACCTCGGGTAGGGCCCCAACGCTTCAGCGGGTCTCGCTGGCATCCCTAAACCTAGACCAGAGGAAAGTGCATTGTGCCATGATCACC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203798348 88 + 204313951 CACCTCAGGTGGGACCCCAACACTTCAGCAAGTGTCACTGTCACCACTAAAGCTAGACAACAGGAGAGTGTGTTGTGCCATGATCATG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15960061 88 +  16417988 CACCTCAGGTGGGACCCCAACACTTCAGCGAGTGTCACTGGCATCACTAAAGCTAGACCAGAAGAGAGTGTGTTATGCCATGATCACG
i saiBol1.JH378155         C 0 I 886
s cebCap1.NW_016108158v1       36891 88 +    298490 CACCTCAGGTGGGACCCCAACACTTCAGCGAGTGTCACTGGCATCACTAAAGCTAGACCAGAAGAGAGTGTGTTGTGCCATGATCACG
i cebCap1.NW_016108158v1   I 49 C 0
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=33155.000000
s hg38.chr5_KI270793v1_alt     18047 4 +    126136 ATGA
s panTro5.chr5             181283808 4 - 181907262 ATGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005518 4 - 183735486 ATGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95902 4 +    698298 ATGA
i gorGor5.CYUI01015805v1   C 0 I 52
s nomLeu3.chr6             120520115 4 - 121039945 ATGA
i nomLeu3.chr6             C 0 I 179
s rheMac8.chr6             179474239 4 - 180051392 ACGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205367 4 - 181584905 ACGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200221 4 -   1764207 ACGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214745 4 -  16742782 ACGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524060 4 -  91010382 ATGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112518 4 -    438239 ACGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151193 4 -    514179 ATGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203798436 4 + 204313951 ATGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961035 4 +  16417988 atga
i saiBol1.JH378155         I 886 C 0
s cebCap1.NW_016108158v1       36979 4 +    298490 ATGA
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=228101.000000
s hg38.chr5_KI270793v1_alt     18051 29 +    126136 ----------------------------------CCCCTCCCCATCCCAGCGCACGCTCCCAC
s panTro5.chr5             181283812 29 - 181907262 ----------------------------------CCCCTCCCCAACCCAGCGCACGCTCCCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005522 29 - 183735486 ----------------------------------CCCCTCCCCAACCCAGCGCACGCTCCCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95958 29 +    698298 ----------------------------------CCCCTCCCCATCCCAGCGCACGCTCCCAC
i gorGor5.CYUI01015805v1   I 52 C 0
s nomLeu3.chr6             120520298 29 - 121039945 ----------------------------------CCCCTCCCCATCCCAGCGCACACTCCCAC
i nomLeu3.chr6             I 179 C 0
s rheMac8.chr6             179474243 29 - 180051392 ----------------------------------CCCCTCCCCATCCCAGCACACGCTCCCAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205371 29 - 181584905 ----------------------------------CCCCTCCCCATCCCAGCACACGCTCCCAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200225 29 -   1764207 ----------------------------------CCCCTCCCCATCCCAGCACACGCTCCCAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214749 29 -  16742782 ----------------------------------CCCCTCCCCATCCCAGCACACGCTCCCAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524064 29 -  91010382 ----------------------------------CCCCTCCCCATCCCAGCACACGCTCCCAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112522 29 -    438239 ----------------------------------CCCCTCCCCATCCCAGCACACGCTCCCAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151197 29 -    514179 ----------------------------------CCCCTCCCCTTCCCAGCACACGCTCCCAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203798440 63 + 204313951 CCCCTCCTTATCCCAGCACAGGATCCCACCATAACCCCTCCCCAACCCAGCACATGCTCCCAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961039 29 +  16417988 c-------------------------------aa---ctccccatcccagcacacgctcccac
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       36983 43 +    298490 CCC--------------------TCCCACCGTGACCCCTCCCCATCCCAGCACACGCTCCCAC
i cebCap1.NW_016108158v1   C 0 M 477
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=23309.000000
s hg38.chr5_KI270793v1_alt     18080 17 +    126136 GACGCACCGTGCTCACA
s panTro5.chr5             181283841 17 - 181907262 GACGCACCGTGATCACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005551 17 - 183735486 GACGCACCGTAATCACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       95987 17 +    698298 GACGCACCGTGCTCACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120520327 16 - 121039945 AACGCACCATGATCAC-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474272 10 - 180051392 GACGCACCAT-------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205400 10 - 181584905 GACGCACCAT-------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200254 10 -   1764207 GACGCACCAT-------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214778 10 -  16742782 GACGCACCAT-------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524093 10 -  91010382 GATGCACCAT-------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112551 10 -    438239 GACACACCAT-------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151226 10 -    514179 GATGCACCAT-------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203798503  2 + 204313951 ----CA-----------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961068  2 +  16417988 ----ca-----------
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e cebCap1.NW_016108158v1       37026 477 +    298490 M
e canFam3.chr34             11685982 2001 +  42124431 I

a score=57182.000000
s hg38.chr5_KI270793v1_alt     18097 25 +    126136 GTGACCCCTCCCCATCCCAGCGCAC
s panTro5.chr5             181283858 25 - 181907262 GCGACCCCTCCCCATCCCAGCGCAC
i panTro5.chr5             C 0 I 150
s panPan2.chr5             183005568 25 - 183735486 GTGACCCCTCCCCATCCCAGCGCAC
i panPan2.chr5             C 0 I 209
s gorGor5.CYUI01015805v1       96004 25 +    698298 GTGACCCCTCCCCATCCCAGCGCAC
i gorGor5.CYUI01015805v1   C 0 I 50
s nomLeu3.chr6             120520343 23 - 121039945 --GACCCCTCCCCATCCCAGCACAC
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203798505 24 + 204313951 -TGacccctccccatcccagcacag
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961070 24 +  16417988 -tgacccctccgcatcccaGCACAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       37518 25 +    298490 GTGACCCCTCCCCATCCCAGCACAC
i cebCap1.NW_016108158v1   M 477 C 0
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      112561  0 -    438239 C
e chlSab2.chr4              90524103  0 -  91010382 C
e cerAty1.NW_012009470v1      214788  0 -  16742782 C
e colAng1.NW_012118799v1      151236  0 -    514179 C
e macNem1.NW_012012389v1      200264  0 -   1764207 C
e macFas5.chr6             181205410  0 - 181584905 C
e rheMac8.chr6             179474282  0 - 180051392 C

a score=19481.000000
s hg38.chr5_KI270793v1_alt     18122 8 +    126136 GCTCCCAC
s panTro5.chr5             181284033 8 - 181907262 GCTCCCAC
i panTro5.chr5             I 150 C 0
s panPan2.chr5             183005802 8 - 183735486 GCTCCCAC
i panPan2.chr5             I 209 C 0
s gorGor5.CYUI01015805v1       96079 8 +    698298 GCTCCCAC
i gorGor5.CYUI01015805v1   I 50 C 0
s nomLeu3.chr6             120520366 8 - 121039945 ACTCCCAC
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203798529 8 + 204313951 gctcccac
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961094 8 +  16417988 GATCCCAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       37543 8 +    298490 GCTCCCAC
i cebCap1.NW_016108158v1   C 0 I 109
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      112561 0 -    438239 C
e chlSab2.chr4              90524103 0 -  91010382 C
e cerAty1.NW_012009470v1      214788 0 -  16742782 C
e colAng1.NW_012118799v1      151236 0 -    514179 C
e macNem1.NW_012012389v1      200264 0 -   1764207 C
e macFas5.chr6             181205410 0 - 181584905 C
e rheMac8.chr6             179474282 0 - 180051392 C

a score=4698.000000
s hg38.chr5_KI270793v1_alt     18130 4 +    126136 AATG
s panTro5.chr5             181284041 4 - 181907262 AATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005810 4 - 183735486 AATG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96087 4 +    698298 AATG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120520374 4 - 121039945 AATG
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203798537 4 + 204313951 catg
i calJac3.chr2             C 0 I 643
s saiBol1.JH378155          15961102 4 +  16417988 GATT
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e cebCap1.NW_016108158v1       37551 109 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I
e manLeu1.NW_012110441v1      112561 0 -    438239 C
e chlSab2.chr4              90524103 0 -  91010382 C
e cerAty1.NW_012009470v1      214788 0 -  16742782 C
e colAng1.NW_012118799v1      151236 0 -    514179 C
e macNem1.NW_012012389v1      200264 0 -   1764207 C
e macFas5.chr6             181205410 0 - 181584905 C
e rheMac8.chr6             179474282 0 - 180051392 C

a score=154860.000000
s hg38.chr5_KI270793v1_alt     18134 30 +    126136 TGCCGGGATCACA-GTGACCCCATGGGCTAC
s panTro5.chr5             181284045 30 - 181907262 TGCCGGGATCACA-GTGACCCCGTGGGCTAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005814 30 - 183735486 TGCCGGGATCACA-GTGACCCCGTGGGCTAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96091 30 +    698298 TGCCGGGATCACA-GTGACCCCGTGGGCTAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120520378 30 - 121039945 CACCATGATCACA-GTGACCCCCTGGGCTAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474282 24 - 180051392 ------GATCACA-ATGACCCCATGGGCTAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205410 24 - 181584905 ------GATCACA-ATGACCCCATGGGCTAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200264 24 -   1764207 ------GATCACA-ATGACCCCATGGGCTAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214788 24 -  16742782 ------GATCACA-ATGACCCCATGGGCTAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524103 24 -  91010382 ------GATCACA-ATGACCCCATGGGCTAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112561 24 -    438239 ------GATCACA-ATGACCCCATGGGCTAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151236 24 -    514179 ------GATCACA-ATGACCCCATGGGCTAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203799184 30 + 204313951 AGCTGTGATCATG-ATGACCACATGATTAAT
i calJac3.chr2             I 643 I 7
s saiBol1.JH378155          15961106 31 +  16417988 AGCTGTGATCATGAATGACCTCATGATGAAT
i saiBol1.JH378155         C 0 I 7
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e cebCap1.NW_016108158v1       37551 109 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=269592.000000
s hg38.chr5_KI270793v1_alt     18164 32 +    126136 CTGCCGCTCCCAAGGACTAATGGAGGCCTCTG
s panTro5.chr5             181284075 32 - 181907262 CTGCCGCTCCCAAGGACTAATGGAGGCCTCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005844 32 - 183735486 CTGCCGCTCCCAAGGACTAATGGAGGCCTCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96121 32 +    698298 CTGCCGCTCCCAAGGACTAATGGAGGCCTCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120520408 32 - 121039945 CTGCTGCTCCCAAGGACTAATGGAGGCCTCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474306 32 - 180051392 CTGCCACTCCCAAGGACTAATGGAGGCCTCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205434 32 - 181584905 CTGCCACTCCCAAGGACTAATGGAGGCCTCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200288 32 -   1764207 CTGCCACTCCCAAGGACTAATGGAGGCCTCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214812 32 -  16742782 CTGCCGCTCCCAAGGACTAATGGAGACCTCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524127 31 -  91010382 CTACCACTCCCAAGGACT-ATGGAGGCCTCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112585 32 -    438239 CTGCCGCTCCCAAGGACTAATGGAGGCCTCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151260 32 -    514179 CTGCCACTTCCAAGGACTAATGGAGGCCTCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203799221 32 + 204313951 CTGCTGCTCCCAAGGACCAGCGGAGGCCTCCA
i calJac3.chr2             I 7 C 0
s saiBol1.JH378155          15961144 32 +  16417988 CTGCAGCTCCCAAGGACCAGCGGCGGCCTCCA
i saiBol1.JH378155         I 7 C 0
s cebCap1.NW_016108158v1       37660 32 +    298490 CTGCGGCTCCCAAGGACCAGCAGAGGCCTCCA
i cebCap1.NW_016108158v1   I 109 C 0
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e otoGar3.GL873745           1845311 228 -   2165740 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=279702.000000
s hg38.chr5_KI270793v1_alt     18196 31 +    126136 TCCCCAGGTTCTATCCCGGGTTCCTCACAGG
s panTro5.chr5             181284107 31 - 181907262 TCCCCAGGTTCTATCCCGGGTTCCTCACAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005876 31 - 183735486 TCCCCAGGTTCTATCCCGGGTTCCTCACAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96153 31 +    698298 TCCCCAGGTTCTGTCCCGGGTTCCTCACAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120520440 31 - 121039945 TCCCCAGGTTCTATCCCGGGTTCCTCACAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474338 31 - 180051392 TCCCCAGGTTCTAACCTGGGTTCCTCACAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205466 31 - 181584905 TCCCCAGGTTCTAACCTGGGTTCCTCACAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200320 31 -   1764207 TCCCCAGGTTCTAACCTGGGTTCCTCACAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214844 31 -  16742782 TCCCCAGGTTCTAACCTGAGTTCCTCACAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524158 31 -  91010382 TGCCCAGGTTCTAACCCGGGTTCCTCACAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112617 31 -    438239 TCCCCAGGTTCTAACCTGGGTTCCTCACAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151292 31 -    514179 TCCCCAGGTTCTATCCCGGGTTCCTCACGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203799253 31 + 204313951 TCCCCAGGTTGTATCTGTGGTTCCTCACAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961176 31 +  16417988 TCCCCAGGTTCTATCCGGGGTTCCTCACAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       37692 31 +    298490 TCCCCAGGTTCTATCCGGGGTTCCTCACAGG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1845539 28 -   2165740 TTCCCAGGTCCTGCCACAGCTCTACCAC---
i otoGar3.GL873745         I 228 C 0
e aotNan1.NW_018503740v1    25367781 4096 -  25620257 T
e canFam3.chr34             11685982 2001 +  42124431 I

a score=4271710.000000
s hg38.chr5_KI270793v1_alt     18227 453 +    126136 GCACCAGCCCTCAGGCCCAGTTAAATTCCGGAGC-----GG-CTCTTTAAGCCCACAGGCCCAGGCCGCTATGGTAGGA-----CCCAGGTGGGAGAGGCTCTCCGTGTGCTGTCTCCCTGACAGGTGCCCCATCCATAGCTTTCTAGAACATCCCAGGGAGGCTCCCA-GGCCCCGAGCCTCAATCCTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGAGCCCTAC--AGAGACCAGGCCAGCGGAAGGAAACAGGGAGACCCACAT-----------GGTC-AGA---GAAGAGGGCTGGAGGTTCAGCCTGAGGG---GCCTCTGGGCTTTCTCTAAACAGAGCGGGGGTGGGAGGAGGCTGTGATGTACAGTGAG-GGGACTTGAGAGGGAAATGGGGGCCTCCACCCACCCCAGGGACGAGCGCTCACCCCAGGCCCACCTGGCTCGCAGCATCCAAGCCAGGGCTACGCAGAGCAGC
s panTro5.chr5             181284138 453 - 181907262 GCACCAGCCCTCAGGCCCAGTTAAATTCCGGAGC-----GG-CTCTTTAAGCCCACAGGCCCAGGCCGCTATGGTAGGA-----CCCAGGTGGGAGAGGCTCTCCGTGTGCTGTCTCCCTGACAGGTGCCCCATCCATAGCTTTCTAGAACATCCCAGGGAGGCTCCCA-GACCCCGAGCCTCAATCCTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGAGCCCTAC--AGAGACCAGGCCAGCGGAAGGAAACAGGGAGACCCACAT-----------GGTC-AGA---GAAGAGGGCTGGAGGTTCAGCCTGAGGG---GCCTCTGGGCTTTCTCTAAACAGAGCGGGGGTGGGAGGAGGCTGTGATGTGCAGTGAG-GGGACTTGAGAGGGAAATGGCGGCCTCCACCCACCCCAGGGACGAGCGCTCACCCCAGGCCCACCCGGCTCGCAGCATCCAAGCCAGGGCTACGCAGGGCAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183005907 453 - 183735486 GCACCAGCCCTCAGGCCCAGTTAAATTCCGGAGC-----GG-CTCTTTAAGCCCACAGGCCCAGGCCGCTATGGTAGGA-----CCCAGGTGGGAGAGGCTCTCCGTGTGCTGTCTCCCTGACAGGTGCCCCATCCATAGCTTTCTAGAACATCCCAGGGAGGCTCCCA-GACCCCGAGCCTCAATCCTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGAGCCCTAC--AGAGACCAGGCCAGCGGAAGGAAACAGGGAGACCCACAT-----------GGTC-AGA---GAAGAGGGCTGGAGGTTCAGCCTGAGGG---GCCTCTGGGCTTTCTCTAAACAGAGCGGGGGTGGGAGGAGGCTGTGATGTGCAGTGAG-GGGACTTGAGAGGGAAATGGGGGCCTCCACCCACCCCAGGGACGAGCGCTCACCCCAGGCCCACCCGGCTCGCAGCATCCAAGCCAGGGCTACGCAGGGCAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96184 452 +    698298 GCACCAGCCCTCAGGCCCAGTTAAATTCCGGAGC-----GG-CTCTTTAAGCCCACAGGCCCAGGCCGCTATGGTAGAG-----CCCAGGTGGGAGAAGCTCTCCGTGTGCTGTCTCCCTGACAGGTGCCCCATCCATAGCTTTCTAGAACATCCCAGGGAGGCTCCCA-GCCCCCGAGCCTCAATCCTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGAGCCCTAC--AGAGACCAGGCCAGCGGAAGGAAACAGGGAGACCCACAT-----------GGTC-AGA---GAAGAGGGCCAGAGGTTCAGCCTGAGGG---GCCTCTGGGCTTTCTCTAAACAGAGC-GGGGTGGGAGGAGGCTGTGATGTGCAGTGAG-GGGACTTGAGAGGGAAATGGGGGCCTCCACCCACCCCAGGGATGAGCGCTCACCCCAGGCCCACCCGGCTCGCAGCATCCAAGCCAGGGCTACGCAGAGTAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120520471 453 - 121039945 GCACCAGCCCTCAGGCCCAGTTAAATTCTGGAGT-----GG-CTCTTTAGGCCCACAGGCCCAGGCCGCTATGGCAGCG-----CCCAGGTGGGAGATGCTCTCCGTGTGCTGTCTCCCTGACAGGTGCCCCATCCATAGCTTTCTAGAACATTCCAGGGAGGCTCCCA-GGCCCCGAGCCTCAATCCTCAAGCCTGTGGGTCCCAGACTGCAGGCCCAGTGAGCCCTAC--AGAGACCAGGCCAGCGGAAGGAAACGGGGAGACCCACAT-----------GGTT-AGA---GAAGAGGGCTGGAGGTGTGGTCTGAGGG---GCCTCTGGGCTTTCTCTAAACAGAGCAGGGGTGGGAGGAGGCTGTGATGTGCAGTGAG-GGGACTTGAGAGGGAAATGGGGGCCTCCACCCACCCCAGGGACGGGCGCTCACCCCAGGCCCACCCGGCTCGCAGCATCCAAGCCAGGGCTACGCAGAGCAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474369 451 - 180051392 GCACCAGCCCTCAGACCCAGTTAAAGTCTGGAGC-----AG-CTCTTTAGGCCCACAGGCCCAGGCTGCTGTGGCAGGA-----CCCAGGCAGGAGAGGCTCTCCGTGTGCTGTCTCCCCGACAGGTGCCCC-TCCATAGCTTTCTAGAACATTCCAGGGAGGCTCCCA-GGCCCTGAGCCTCAATCTTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGGGCCCTAC--AGAGACTAGGCCAGCGGAAGGAAACAGGGAGACCCACGT-----------GGTC-AGA---GAGGAGGGTTGGAGGTGCAGCCTGAGGGGCCGCCTCTGACCTT----TAAATGGAGTGGGGGTGGGAGGAGGCTTCAATGTGCAGTGAG-GGGACTTGAGAGGGAAATGGGGGTCTCCACCCACCCCAGGGACGGGCACTCACCCCAGGCCCACCCAGCTCACAGCATCCAAGCCAGGGCTACGTAGAGCGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205497 451 - 181584905 GCACCAGCCCTCAGACCCAGTTAAAGTCTGGAGC-----AG-CTCTTTAGGCCCACAGGCCCAGGCTGCTGTGGCAGGA-----CCCAGGCAGGAGAGGCTCTCCGTGTGCTGTCTCCCCGACAGGTGCCCC-TCCATAGCTTTCTAGAACATTCCAGGGAGGCTCCCA-GGCCCTGAGCCTCAATCTTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGGGCCCTAC--AGAGACTAGGCCAGCGGAAGGAAACAGGGAGACCCACGT-----------GGTC-AGA---GAGGAGGGCTGGAGGTGCAGCCTGAGGGGCCGCCTCTGACCTT----TAAATGGAGTGGGGGTGGGAGGAGGCTTCAATGTGCAGTGAG-GGGACTTGAGAGGGAAATGGGGGTCTCCACCCACCCCAGGGACGGGCACTCACCCCAGGCCCACCCAGCTCACAGCATCCAAGCCAGGGCTACGTAGAGCGGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200351 451 -   1764207 GCACCAGCCCTCAGACCCAGTTAAAGTCTGGAGC-----AG-CTCTTTAGGCCCACAGGCCCAGGCTGCTGTGGCAGGA-----CCCAGGCAGGAGAGGCTCTCCGTGTGCTGTCTCCCCGACAGGTGCCCC-TCCATAGCTTTCTAGAACATTCCAGGGAGGCTCCCA-GGCCCTGAGCCTCAATCTTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGGGCCCTAC--AGAGACTAGGCCAGCGGAAGGAAACAGGGAGACCCACGT-----------GGTC-AGA---GAGGAGGGCTGGAGGTGCAGCCTGAGGGGCCGCCTCTGACCTT----TAAATGGAGTGGGGGTGGGAGGAGGCTTCAATGTGCAGCGAG-GGGACTTGAGAGGGAAATGGGGGTCTCCACCCACCCCAGGGACGGGCACTCACCCCAGGCCCACCCAGCTCACAGCATCCAAGCCAGGGCTACGTAGAGCGGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      214875 453 -  16742782 GCACCAGCCCTCAGACCCAGTTAAAGTCTGGAGC-----GG-CTCTTTAGGCCCACAGGCCCAGGCTGCTGTGGCAGGA-----CCCACGCAGGAGAGGTTCTCCGTGTGCTGTCTCCCCAACAGGTGCCCC-TCCATAGCTTTCTAGAACATTCCAGGGAGGCTCCCA-GGCTCTGAGCCTCAATCTTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGGGCCCTACAGAGAGACTAGGCCAGCGGAAGGAAACAGGGAGACCCACGT-----------GGTC-AGA---GAGGAGGGCTGGAGGTGCAGCCTGAGGGGCCGCCTCTGACCTT----TAAATGGAGTGGGGGTGGGAGGAGGCTTCAATGTGCAGTGAG-GGGACTTGAGAGGGAAATGGGGGTCTCCACACACCCCAGGGACGGGCACTCACCCCAGGCCCACCCAGCTCACAGCATCCAAGCCAGGGCTACATAGAGCGGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524189 454 -  91010382 GCACCAGCCCTCAAACCCAGTTAAAGTCTGGAGT-----GG-CTCTTTCGGCCCACAGGCCCAGGCCGCTGTGGCAGGA-----CCCAGGCAGAAGAGGCTCTCCGTGTGCTGTCTCCCCGAAAGGTGCCCC-TCCATAGCTTTCTAGAACATTCCAGGGAGGTTCCCA-GGCCCTGAGCCTCAATCCTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGGGCCCTAC--AGAGACTAGGCCAGTGGAAGGAAACAGGAAGACCCACGT-----------GGTCAAGA---GAGGAGGGCTGGAGGTGCAGCCTGAGGG---GCCTCTGACCTTTATCTAAATGGAGTGGGGGTGGGAGGAGGCTGCGATGTGGGGTGGGAGGGACTTGAGAGGGAAATGGGGGTCTCCACCCACCCCAGGGACGGGCACTCACCCCAGGCCCACCCAGCTCACAGCATCCAAGCCAGGGCTACGTAGAGCGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      112648 453 -    438239 GCACCAGCCCTCAGACCCAGTTAGAGTCTGGAGC-----AG-CTCTTTAGGCCCACAGGCCCAGGCTGCTGTGGCAGGA-----CCCAGGCGGGAGAGGCTCTCCATGTGCTGTCTCCCCGACAGGTGCCCC-TCCATAGCTTTCTAGAACATTCCAGGGAGGCTCCCA-GGTCCTAAGCCTCAATCTTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGGGCCCTACAGAGAGACTAGGCCAGCGGAAGGAAACAGGGAGACCCACGT-----------GGTC-AGA---GAGGAGGGCTGAAGGTGCAGCCTGAGGGGCCGCCTCTGACCTT----TAAATGGAGTGGGGGTGGGAGGAGGCTTCAATGTGCAGTGAG-GGGACTTGAGAGGGAAATGGGGGTCTCCTCCCACCCCAGGGACGGGCACTCACCCCAGGCCCACCCAGCTCACAGCATCCAAGCCAGGGCTATGTAGAGCGGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151323 447 -    514179 GCACCAGCCCTCAGGCCCAGTTAAAGTCTGGAGC-----GG-CTCTTTAGGTCCACAGGCTCAGGCTGCTGTGGTAGGA-----CCCAGGCGGGAG-----CTCGGTGTGCTGTCTCCCCGACAGGTGCCCC-TCCATAGCTTTCTGGAACATTCCAGGGAGGCTCCCA-GGCCCTGAGCCTCAATCCTCAAGCCTGTGGGTCCCAGACTGCAGGCTCAGTGGGCCCTAC--AGAGACCAGGCCAGTGGAAGGAAACAGGGAGACCCACGT-----------GGTC-AGA---GAGGAGGGCTGGAGGTGCAGCCTGAGGG---GCCTCTGATCTTTCTCTAAATGGAGCGGGGGTGGGAGGAGGCTGCGATGTGCAGTGAG-GGGACTTGAGAGGGAAATGGGGGTCTCCACCCACCCCAGGGACGGGCGCTCACCCCAGGCACACCCAGCTCACAGCATCCAAGCCAGGGCTACGTAGAGCGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203799284 424 + 204313951 GCACCAGCCCTCAGGCCGAGTTATCATCTGGAGC-----AG-CACTTTAGGGCCACAGACCCAGGTCGCCATGGCAGAA-----TTCGGGTGGGAGAGGCTCACCATTTGCTGTCTCTCCAACAGGTGCACC-TCCAGAGCTTTCTAGAACATTCCAGGGAGGCTCCCA-GGCCCCGAGTCTCCATCCTCAAGCCT------------------------TTGGCCCTAC--AGAGACCAGAGA----GAAGGAGACGGGGAGACCCACAC-----------GGTC-GGA---GAGGAGAGCTGGGGGAGCAGCCTGAGGG---AGCTCTGGGCTTTCTCTAAGTGGAGTAGGGGTGGGAGGAGGCTGCAATGTGCAGTGAG-GGGGCTTGAGAGGGAAATGGGGGTCTCCACCCACCTGAGGGACAGGCGCTCACCGTAAGCTCACCCGGCTCGCGGCATGGAGACCAGGGCTACGCAGAGCAGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961207 421 +  16417988 GCCCCAGCCCTCAGGCCGAGTTCACATCTGGAGT-----GG-CACTTTAGGCCAACAGACCCAGATCGCTGCGGCAGAA-----GCCGGGTGGGAGAGGCTCCCCATTTGCCGTCTCTCCAACAGGTAAACC-TCCATAGCTTTCTAGAACATTCCAAGGAGGCTCCCA-GTCCCCGAGTCTCCATCCTCAAGCCT-----------------------GTGGGCCCTCC--AGAGACCAGACA--------GAGACAGGAAGACCCACGC-----------GGTT-GGA---GAGGAGAGCTGGGGGAGCAGCCTGAGGG---AGCCCTGGGCTTTCTCTAAATGGAGTAGGGGTGGGAGGAGGCTGCTATGTGCAGTGAG-GGGGCTTGAGAGGGAAATGAGTGTCTCCACCCACCCCAGGGACAGGCACTCACCCTAAGCCCACGCGGCTCGCAGCATCGTGACCAGGGCTGTGCACAGCAGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       37723 453 +    298490 GCACCAACCCTCAGGGCGAGTTAACATCTGGAGCAGCCTGG-CACTTTAGGCCCACAGACCCAGGTTGCTGTGGCAGAA-----TTCGGGTGGGAGAGGCTCCCCATTTGCCGTCTCTCCAACAGGTGCACC-TCCATAGCTTTCTAGAACATTCCAGGGAAGCTCCCA-GTCCCCGAGTCTCCATCCTCAAACCTGTGGGCCATAGACTGCAGGCTCAGTGGGCCCTGC--AAAGACCAGACA----GAAGGAGACAGGGAGACCCACAC-----------GGTC-AGA---GAGGAGAGCTGGGGGAGCAGCCTGAGGG---AGCTCTGGGCTTTCTCTAAATGGAGTAGGGGTGGAAGGAGGCTGCGATGTGCAGTGAG-GGGGCTTGAGGGGGAAATGGGGGTCTCCACCCACCCCAGGGACAGGCGCTCACCCTAAGCCCACCTGGCTTGCAGCATCGAGACCAGGGCTACGCAGAGCAGC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25363685 447 -  25620257 GCACCAGCCCTCAGGCCGAGTTGACATCTGAAGC-----GGCCACTTTAGGCCCACAGGTCCAGGTCGCTGTGGCAGGA-----TCCGGGTGGGAGAGGCTCCCCATTTGCTGTCTCTCCAACAGGTGCACC-TCCATAGCTTTCTAGAACATTCCAGGGAGGCTCCCA-GTCCCCGAGTCTCCATCCTCAAGCCTGTGGGCCCTAGACTGCAGGCTCAGTGGGCCCTAA--AGAGACCAGACA----GAAGGAGATGGGGAGACCC-CAC-----------GGTC-GGA---GAGGAGAGCTGGGGGAGCAG-CTGAGGG---AGCTCTGGGCTTTCTCTAAATGGAGTAGGGGTGGGAGGAGGCTGCGATGTGCAGTAAG-GGGGCTTGAGAGGGAAATGGGGGTCTCCACCCACCCCAGGGAAAGGCACTCACCCTAAGCCCACCCGGCTCGCAGCATCGAGACCAGGGCTACGCAGAGCAGC
i aotNan1.NW_018503740v1   T 4096 I 1076
s otoGar3.GL873745           1845567 386 -   2165740 ---TCAGCCTT--------GTGGAAATCTGGAGC-----AG-CACTTTGGACTAGTGAGCCCA----TCCGTGGCTGGACATTTCCCAGATAGAAATG----------------TTCCCCACCAGATGCCCCCTCCACAGCTTTCTAGAACATTCCAGGGAAGCTCTCAGGGCCTCCAGCCTTAATTGCCAAGCCTGTAGGTACCAAACTGCAGGGTCAGTCATGCCTAA--AGAGATGAGGGCAGAGGAAGATGACAGGGACACCCACGCCAGCCATCGAGGGGA-AGATTGGAGCAGGGCTGGGG-----GCCTGAGGG---G--TTTGGACTTTCTGCAAAACAGGTGCGGGTGGAAGGAGGCTGT--------------GAAACATCATAGGGA-------------------------------TACTCACCTCAGTCCCATC-----CCCCATGTCTCTGTCAGGGCTGGGCAGAGTGGC
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11685982 2001 +  42124431 I

a score=258386.000000
s hg38.chr5_KI270793v1_alt     18680 35 +    126136 TGCTCC------------------CAAACCCAGCTCCCTCTGGGTGCCTGAGC
s panTro5.chr5             181284591 35 - 181907262 TGCGCC------------------CAAACCCAGCTCCCTCTGGGTGCCTGAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006360 35 - 183735486 TGCGCC------------------CAAACCCAGCTCCCTCTGGGTGCCTGAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96636 35 +    698298 TGCGCC------------------CAAACCCAGCTCCCTCTGGGTGCCTGAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120520924 35 - 121039945 TGCGCC------------------CAAACCCAGCTCCCTCTGGGTGCCCGAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474820 35 - 180051392 TGCACC------------------CAACCCCAGCTGCCGCTGGGCGCCTGAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205948 35 - 181584905 TGCACC------------------CAACCCCAGCTGCCGCTGGGCGCCTGAGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200802 35 -   1764207 TGCACC------------------CAACCCCAGCTGCCGCTGGGTGCCTGAGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215328 35 -  16742782 TGCACC------------------CAACCCCAGCTGCCGCTGGGCGCCTGAGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524643 35 -  91010382 TGCACC------------------CAACCCCAGCTGCTGCTGGGCACCTGAGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113101 35 -    438239 TGCACC------------------CAACCCCAGCTGCCGCTGGGCGCCTGAGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151770 35 -    514179 TACACC------------------CAAACCCAGCTGCCGCTGGGTGCCTGAGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203799708 35 + 204313951 TACACC------------------AAAGCCTAACTCCAGCTGTGTGCCTGAGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961628 35 +  16417988 TACACC------------------CAAGCCCAACTCCAGCTGTGTGCCTGAGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       38176 35 +    298490 TACACC------------------CAAGCCCAACTCCAGCTGTGTGCCTGAGC
i cebCap1.NW_016108158v1   C 0 I 78
s otoGar3.GL873745           1845953 46 -   2165740 TGCTGCTGGGGTCTGTTGGCCTGTCAGCCCCGACTAGTGCCTGGTG-------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=457768.000000
s hg38.chr5_KI270793v1_alt     18715  78 +    126136 CAGGCTCAGAGATGCATCCTGCATCGTTCT----TTCTCCATCCTGTGTCA----ACAAGAC-----------------AACACAGGCAACCAGCGT----------GGCCAT
s panTro5.chr5             181284626  78 - 181907262 CAGGCTCAGAGATGCATCCTGCATCGTTCT----TTCTCCATCCTGTGTGG----AGAAGAC-----------------GACACAGGCAACCAGCGT----------GGCCAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006395  78 - 183735486 CAGGCTCAGAGATGCATCCTGCATCGTTCT----TTCTCCATCCTGTGTGG----AGAAGAC-----------------GACACAGGCAACCAGCGT----------GGCCAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96671  78 +    698298 CAGGCTCAGAGATGCATCCTGCATCGTTCT----TTCTCCATCCTGTGTCG----AGGAGAC-----------------GACACAGGCAACCAGCGT----------GGCCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120520959  78 - 121039945 CAGGCTCGGAGATGCATCCTGCATCGTTCT----TTCTCCATCCTGTGTCA----AGAAGAA-----------------GACACAGGCAACCAGCGT----------GGCTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474855  78 - 180051392 CAAGCTCGGAGATGCGTCCTGCGTTGTCCT----CTCTCCACCCTGTGTTG----AGAAGAA-----------------GACACGGGCGTCCAGCGT----------GACCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181205983  78 - 181584905 CAAGCTTGGAGATGCGTCCTGCGTTGTCCT----CTCTCCACCCTGTGTTG----AGAAGAA-----------------GACACGGGCGTCCAGCGT----------GGCCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200837  78 -   1764207 CAAGCTCGGAGATGCGTCCTGCGTTGTCCT----CTCTCCACCCTGTGTTG----AGAAGAA-----------------GACACGGGCGTCCAGCGT----------GGCCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215363  78 -  16742782 CAAGCTCGGAGATGCGTCCTGCATTGTCCT----CTCTCCACCCTGTCTTG----AGAAGAA-----------------GACACGGGCATCCAGCGT----------GGCCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524678  78 -  91010382 CAAGCTCGGAGATGCGTCCTGCGTTGTCCT----CTCTCCACCCCGTGTTG----AGAAGAA-----------------GACACGGGTGTCCAGCGT----------GGCCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113136  78 -    438239 CAAGCTCGGAGATGCGTCCTGCATTGTCCT----CTCTCCACTCTGTGTTG----GGAAGTA-----------------GACACGGGCGTCCAGCGT----------GGCCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151805  78 -    514179 CAAGCTCGGAGATGCATCCTGCGTTGTCCT----CTCTCCGCCCTGTGTTG----AGAAGAA-----------------GACACGGGCGTCCAGCAT----------GGCCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203799743  78 + 204313951 -TCCCTCAGAGACCTGTCCTGTGTTGTCCT----CTGTCCATCCTGCGTTTG---AGAAGGA-----------------GACACAGGCATCCAGCGC----------AGCCGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961663  81 +  16417988 -TCGCTCAGAGACTGGTCCTGAGTCATCCT----CTGTCCGCCCTGCGTTTGAGAAGAAGGA-----------------GATGCGGGCATCCAGCGC----------AGCCGG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1845999 106 -   2165740 CTTGATCAG---CACATCTTGTCCAGTGTCAGAGCTGGCCGCCAGGGCCAG----TGAGGGCCCAGacacacaaacacgcacacacacacacaGCGTCTGTTGGTGAAGCTTG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e cebCap1.NW_016108158v1       38211  78 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=149755.000000
s hg38.chr5_KI270793v1_alt     18793 16 +    126136 GCTGGAAATCCACAGC
s panTro5.chr5             181284704 16 - 181907262 GTTGGAAATCCACAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006473 16 - 183735486 GTTGGAAATCCACAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96749 16 +    698298 GCTGGAAATCCACAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521037 16 - 121039945 GCTGGAAATCCACAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474933 16 - 180051392 GCTGGACATCCACAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206061 16 - 181584905 GCTGGACATCCACAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200915 16 -   1764207 GCTGGACATCCACAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215441 16 -  16742782 GCTGGACATCCACAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524756 16 -  91010382 GCTGGACATCCACAGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113214 16 -    438239 GCTGGATATCCACAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151883 16 -    514179 GCTGGACATCCACAGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203799821 16 + 204313951 GCTGGAAATCCACAGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961744 16 +  16417988 GCTGGAAATCCACAGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       38289 16 +    298490 GCTGGAAATCCACAGC
i cebCap1.NW_016108158v1   I 78 C 0
s otoGar3.GL873745           1846105 16 -   2165740 GCTTGAAGTCCACAGC
i otoGar3.GL873745         C 0 I 71
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=324883.000000
s hg38.chr5_KI270793v1_alt     18809 39 +    126136 CTAGCGGAGCGGCCTCGCCTGCATTCATGTGGCCAGTGG
s panTro5.chr5             181284720 39 - 181907262 CTAGCGGAGCGGCCTCGCCTGCATTCATGTGGCCAGTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006489 39 - 183735486 CTAGCGGAGCGGCCTCGCCTGCATTCATGTGGCCAGTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96765 39 +    698298 CTAGCGGAGCGGCCTCGCCTGCATTCATGTGGCCAGTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521053 39 - 121039945 CTAGTGGAGCGGCCTCGCCTGCATTCATGGGGCCAATGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474949 39 - 180051392 CTAGCAGAGCGGCCTCGCCCGTGCTCATGTGGCCAGTGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206077 39 - 181584905 CTAGCAGAGCGGCCTCGCCCGTGCTCATGTGGCCAGTGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200931 39 -   1764207 CTAGCAGAGCGGCCTCGCCTGTGCCCATGTGGCCATTGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215457 39 -  16742782 CTAGCAGAGCGGCCTCGCCTGTGCTCATGTGGCCAGTGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524772 39 -  91010382 CTAGCAGAGCGGCCTCGCCTGTGCTCATGTGGCCAGTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113230 39 -    438239 CTAGTAGAGCGGCCTCGCCTGTGCTCATGTGGCCAGTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151899 39 -    514179 CTAGCAGAGCGGCCTCGCCTGTGTTCATGTGGCCAGTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203799837 39 + 204313951 CTAGCAGTGCAACCTCACCTGCACTCACATGGCCAGTGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961760 39 +  16417988 CTGGCGGTGCAACCTCACCTGCACTCATGTGGCCAGTGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       38305 39 +    298490 CTAGCAGTGCAACCTCACCTGCACTCACGTGGCCAGTGG
i cebCap1.NW_016108158v1   C 0 I 2392
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e otoGar3.GL873745           1846121 71 -   2165740 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=24144.000000
s hg38.chr5_KI270793v1_alt     18848 4 +    126136 AATT
s panTro5.chr5             181284759 4 - 181907262 AATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006528 4 - 183735486 AATT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96804 4 +    698298 AGTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521092 4 - 121039945 AACT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474988 4 - 180051392 AACT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206116 4 - 181584905 AACT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200970 4 -   1764207 AACT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215496 4 -  16742782 AACT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524811 4 -  91010382 AACT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113269 4 -    438239 AACT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151938 4 -    514179 AACT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203799876 4 + 204313951 GACT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15961799 4 +  16417988 GACT
i saiBol1.JH378155         C 0 I 70
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e otoGar3.GL873745           1846121 71 -   2165740 I
e cebCap1.NW_016108158v1       38344 2392 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=13079.000000
s hg38.chr5_KI270793v1_alt     18852 3 +    126136 CGC
s panTro5.chr5             181284763 3 - 181907262 CGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006532 3 - 183735486 CGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96808 3 +    698298 GGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521096 3 - 121039945 CGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474992 3 - 180051392 CGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206120 3 - 181584905 CGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200974 3 -   1764207 CGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215500 3 -  16742782 CGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524815 3 -  91010382 CGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113273 3 -    438239 CGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151942 3 -    514179 CGT
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e otoGar3.GL873745           1846121 71 -   2165740 I
e cebCap1.NW_016108158v1       38344 2392 +    298490 I
e saiBol1.JH378155          15961803 70 +  16417988 I
e calJac3.chr2             203799880 0 + 204313951 C
e canFam3.chr34             11685982 2001 +  42124431 I

a score=10010.000000
s hg38.chr5_KI270793v1_alt     18855 2 +    126136 GG
s panTro5.chr5             181284766 2 - 181907262 GG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006535 2 - 183735486 GG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96811 2 +    698298 GG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521099 2 - 121039945 AT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474995 2 - 180051392 GG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206123 2 - 181584905 GG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200977 2 -   1764207 GG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215503 2 -  16742782 GG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524818 2 -  91010382 GG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113276 2 -    438239 GG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151945 2 -    514179 GG
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1846192 2 -   2165740 GA
i otoGar3.GL873745         I 71 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e cebCap1.NW_016108158v1       38344 2392 +    298490 I
e saiBol1.JH378155          15961803 70 +  16417988 I
e calJac3.chr2             203799880 0 + 204313951 C
e canFam3.chr34             11685982 2001 +  42124431 I

a score=505659.000000
s hg38.chr5_KI270793v1_alt     18857 76 +    126136 CACACACATTCGCACTGTCAC------------GCTCAGTTCACGTGTGCACACGCTCACAGCCACA-GCACACTCACAGTTCACACAC-
s panTro5.chr5             181284768 76 - 181907262 CACACACATTCGCACTGTCAC------------GCTCAGTTCACGTGTGCAcacgcttacagccaca-gcacactcacagttcacacac-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006537 76 - 183735486 CACACACATTCGCACTGTCAC------------GCTCAGTTCACGTGTGCAcacgcttacagccaca-gcacactcacagttcacacac-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96813 76 +    698298 CACACACATTCGCACTGTCAC------------GCTCAGTTCACGTGTGCAGACGCTCACAGCCACA-GCACACTCACAGTTCACACAC-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521101 72 - 121039945 CACACACATTTGCACTGTCAT------------GCTCAGTTCACGTGTGcacacgctcacagccaca-gca----cacagttcacacac-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179474997 74 - 180051392 CACACACCTTCGCACTGTCAC------------GCTCAGTTCACGTGTGTACACGCTCACAGCCACA-GCACAGT--CAGTTCACACAC-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206125 74 - 181584905 CACACACCTTCGCACTGTCAC------------GCTCAGTTCATGTGTGTACACGCTCACAGCCACA-GCACAGT--CAGTTCACACAC-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      200979 74 -   1764207 CACACACCTTCGCACTGTCAC------------GCTCAGTTCACGTGTGTACATGCTCACAGCCACA-GCACAGT--CAGTTCACACAC-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215505 74 -  16742782 CACACACCTTCGCACTGTCAC------------GCTCAGCTCACGTGTGTACACGCTCACAGCCACA-GCACAGT--CAGTTCACACAC-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524820 74 -  91010382 CACACACCTTTGCACTGTCAT------------GCTCAGTTCATGTGTGTACACGCTCACAGCCACA-GTACAGT--CAGTTCACACAC-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113278 74 -    438239 CACACACCTTCGCACTGTCAC------------GCTCAGTTCACGTGTGTACACGCTCACAGCCACA-GCACAGT--CAGTTCACACAC-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      151947 74 -    514179 CACACACCTTCGCACTGTCAC------------GCTCAGTTCACATGTGTACACACTCACAGCCACA-GCACAGT--CAGTTCACACAC-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203799880 66 + 204313951 ----CACCTTCGCACATTCAC------------GCCCGGCTCAC--GTGCACACGCTCACAAGCACA-GCACA----CAGTCCACGTTC-
i calJac3.chr2             C 0 I 84
s saiBol1.JH378155          15961873 72 +  16417988 CACTCACCTTCGCACACTCAT------------GCTCAGCTCACATGTACACACACTCACAAGCACA-GCACA----CGGTCCACGTTC-
i saiBol1.JH378155         I 70 I 107
s otoGar3.GL873745           1846194 85 -   2165740 AACACACATGTGCACTCTTGCACACTCCCCCTAACTCAGCCCACACTGGCA---GGTCACACCCACACATACAGT--CAGTTCACACTAC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e cebCap1.NW_016108158v1       38344 2392 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=176047.000000
s hg38.chr5_KI270793v1_alt     18933 28 +    126136 CT---CACAC-GCATACA-----------TACAC-----AGGTGTACG
s panTro5.chr5             181284844 31 - 181907262 ctgctcacac-gcataca-----------tacac-----aggtgtacg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006613 31 - 183735486 ctgctcacac-gcataca-----------tacac-----aggtgtacg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96889 31 +    698298 CTGCTCACAC-GCATACA-----------TACAC-----AGGTGTACG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521173 32 - 121039945 ctgctcacacagcataca-----------tacac-----aggtgtacg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475071 32 - 180051392 CTGCTCACACTGCGTACA-----------TACAC-----AGGTGTACG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206199 32 - 181584905 CTGCTCACACTGCGTACA-----------TACAC-----AGGTGTACG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201053 32 -   1764207 CTGCTCACACTGCGTACA-----------TACAC-----AGGTGTACG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215579 32 -  16742782 CTGCTCACACTGCGTACA-----------TACAC-----AGGTGTACG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524894 32 -  91010382 CTGCTCACACTGCATACA-----------TACAC-----AGTTGTACG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113352 32 -    438239 CTGCTCACACTGCGTACA-----------TACAC-----AGGTGTACG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152021 29 -    514179 ---CTCACACTGCGTACA-----------TACAC-----AGGTGTACG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203800030 33 + 204313951 ---CTCACAC-GCACACC-----------TGCTCACACTAAAACCACA
i calJac3.chr2             I 84 I 14
s saiBol1.JH378155          15962052 28 +  16417988 ---CTCACAT-GTACACA-----------CACTC-----AGGAGCACA
i saiBol1.JH378155         I 107 I 308
s otoGar3.GL873745           1846279 39 -   2165740 ---CCCACAC-TCATGCCCCACTTGCTCTCACAC-----TATTGTACA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e cebCap1.NW_016108158v1       38344 2392 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=728531.000000
s hg38.chr5_KI270793v1_alt     18961 118 +    126136 TGCACATGCACACTCACGTACACACCCAC----CCACACACAGTCTCACACCCA------------GGTTCACACCCACACATGGACCT-----------------------------------------CAATC---CACCGGTACCTGCCACACACCCACAC------------------------------------------------------------------------------GCGGACCTCCATCC
s panTro5.chr5             181284875 122 - 181907262 tgcacatgcacactcacgtacacactcacacacccacacacagtctcacaccca------------gtttcacacccacacATGGACCT-----------------------------------------CAATC---CACCGGTACCTGCCACACACCCACAC------------------------------------------------------------------------------GTGGACCTCCATCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006644 122 - 183735486 tgcacatgcacactcacgtacacactcacacacccacacacagtctcacaccca------------gtttcacacccacacATGGACCT-----------------------------------------CAATC---CACCGGTACCTGCCACACACCCACAC------------------------------------------------------------------------------GTGGACCTCCATCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       96920 157 +    698298 TGCACATGCACACTCACGTACACGCTCAC----CCACACACAGTCTCACACCCA------------GTTGCACACCCACACATGGACCT-----------------------------------------AAATC---CACCGGTACCTGCCACACACCCACAC---------------------------------------GTGGACCTCCATCCACTGATATCTGTCACACACCCACATGTGGACCTCCATCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521205 196 - 121039945 tgcacatgcacactcatgtacacgctcac----ccacacacagtctcacaccca------------gttgcacacccacacaTGGACCT-----------------------------------------CCATC---CACTGGTATCTGCCACACACCCACACATGGACCTCCATCCTCTGGTATCTGTCACACACCCACACGTGGACCTCCATCCACCGGTATCTGTCAAACACCCACGCATGGACCTCCATCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475103 122 - 180051392 AGCACATGCACACCCGTGTACACGCTCACACACCCACACGCAGTCTCACACCCA------------GTTGCACACCCACACGTGGACCT-----------------------------------------CCATC---CACCAGTACCCGTCACACACCCACAC------------------------------------------------------------------------------GTGGACCTCTATCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206231 122 - 181584905 AGCACATGCACACCCGTGTACACGCTCACACACCCACACGCAGTCTCACACCCA------------GTTGCACACCCACACGTGGACCT-----------------------------------------CCATC---CACCAGTACCCGTCACACACCCACAC------------------------------------------------------------------------------GTGGACCTCTATCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201085 122 -   1764207 AGCACATGCACACCCGTGTACACGCTCACACACCCACACGCAGTCTCACACCCA------------GTTGCACACCCACACGTGGACCT-----------------------------------------CCATC---CACCAGTACCCATCACACACCCACAC------------------------------------------------------------------------------GTGGACCTCTATCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215611 122 -  16742782 AGCACATGCACACTCGTGTacacgctcacacacccacacacagtctcacaccca------------gttgcacacccacacGTGGACCT-----------------------------------------CCATC---CACCAGTACCCATCACACACCCACAC------------------------------------------------------------------------------GTGGACCTCTATCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90524926 122 -  91010382 AGCACATCCACACTCGTGTACACGCTCACACACCCACACGCAGTCTCACACCCA------------GTTGCACACCCACACGTGGACCT-----------------------------------------CCATC---CACCGGAACCCGTCACACACCCACAC------------------------------------------------------------------------------GTGGACCTCCATCC
i chlSab2.chr4             C 0 I 82
s manLeu1.NW_012110441v1      113384 122 -    438239 AGCACATGCACACTCGTGTacacgctcacacacccacacacagtctcacaccca------------gttgcacacccacacGTGGACCT-----------------------------------------CCATC---CACCAGTACCCGTCACACACCCACAC------------------------------------------------------------------------------GTGGACCTCTATCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152050 122 -    514179 GGCACATGCACACTCGTGTACACGCTCACACACCCACACGCAGTCTCACACCCA------------GTTTCACACCCACACGTGGACCT-----------------------------------------GCATC---CACCGGTACCCGTCACACACCCACAC------------------------------------------------------------------------------GTGGACCTCTATCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203800077 177 + 204313951 TGCACATGAACACTCATGGACATGCTTGCACACCCACACACAGTCTC-CATCCAATACTGGCCCCCATCACACACCCACATGTGGACCCCCATACAGCACCAGCCGCATCACACACTGACACGTACACCTCCATCCAGCACCGGTACCCATCACACACTCACAC------------------------------------------------------------------------------GTGGACCCCCATCC
i calJac3.chr2             I 14 I 922
s saiBol1.JH378155          15962388 131 +  16417988 tgtacatgcacactcatggacatgcttgcacacccacacacaGTCTC-CATCCAATACCGGCCCCCATCACACACCCACATGTGGACCC-----------------------------------------CCATCCAGCACTGG-AGCCATCACACACCCACAC------------------------------------------------------------------------------GTGGACCTCC----
i saiBol1.JH378155         I 308 C 0
s otoGar3.GL873745           1846318  74 -   2165740 TGTGCATGCACTTATGTGGTCTCACACCCACATGCATGCCCAGTTTGGTA-CCA------------GTTTGGTACCCACAGGC--ACCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e cebCap1.NW_016108158v1       38344 2392 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=93186.000000
s hg38.chr5_KI270793v1_alt     19079 24 +    126136 CACTCCAA-----GGCCTTTCCCCACATC
s panTro5.chr5             181284997 24 - 181907262 CACTCCAA-----GGCCTTTCCCCACATC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006766 24 - 183735486 CACTCCAA-----GGCCTTTCCCCACATC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97077 24 +    698298 CACTCCAA-----GGCCTTTCCCCACATC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521401 24 - 121039945 CACTCCAA-----GGCCTTTCCCCACATC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475225 24 - 180051392 CATGCCAA-----GGCCTCTCCCCACACC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206353 24 - 181584905 CATGCCAA-----GGCCTCTCCCCACACC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201207 24 -   1764207 CATGCCAA-----GGCCTCTCCCCACACC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215733 24 -  16742782 CATGCCAA-----GGCCTCTCCCCACACC
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      113506 24 -    438239 CACGCCAA-----GGCCTCTCCCCACACC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152172 24 -    514179 CACTCCAA-----GGCCTCTCCCCATACC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801176 26 + 204313951 CACACCCACATGTGGACCTCCCCTAC---
i calJac3.chr2             I 922 C 0
s saiBol1.JH378155          15962519  6 +  16417988 --------------------CCCTAC---
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1846392 18 -   2165740 ---TCCAG-----TGTC---CAGCACATG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e cebCap1.NW_016108158v1       38344 2392 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I
e chlSab2.chr4              90525048 82 -  91010382 I

a score=2660.000000
s hg38.chr5_KI270793v1_alt     19103 1 +    126136 -C
s panTro5.chr5             181285021 1 - 181907262 -C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006790 1 - 183735486 -C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97101 1 +    698298 -C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521425 1 - 121039945 -C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475249 1 - 180051392 -C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206377 1 - 181584905 -C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201231 1 -   1764207 -C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215757 1 -  16742782 -C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525130 1 -  91010382 -C
i chlSab2.chr4             I 82 C 0
s manLeu1.NW_012110441v1      113530 1 -    438239 -C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152196 1 -    514179 -C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801202 1 + 204313951 -C
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962525 1 +  16417988 -C
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1846410 1 -   2165740 G-
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e cebCap1.NW_016108158v1       38344 2392 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=325735.000000
s hg38.chr5_KI270793v1_alt     19104 36 +    126136 CCGGGCGGCAGGAGCCCAGCGGTCAGTGCAGAGGCA
s panTro5.chr5             181285022 36 - 181907262 CCGGGCGGCAGGAGCCCAGCGGGCAGTGCAGAGGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006791 36 - 183735486 CCGGGCGGCAGGAGCCCAGCGGGCAGTGCAGAGGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97102 36 +    698298 CCGGGCGGCAGGAGCCCAGCGGGCAGTGCAGAGGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521426 36 - 121039945 CCGGGCGGCAGGAGCCCAGCGGGCAGTGCAGAGGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475250 36 - 180051392 CTGGGTGGCAGGAGCCCAGCGGGTAGTGCAGAGGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206378 36 - 181584905 CTGGGTGGCAGGAGCCCAGCGGGTAGTGCAGAGGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201232 36 -   1764207 CTGGGTGGCAGGAGCCCAGCGGGTAGTGCAGAGGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215758 36 -  16742782 CTGGGTGGCAGGAGCCCAGCGGGTAGTGCAGAGGCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525131 36 -  91010382 CAAGGGGGCAGGAGCCCAGCGGGTAGTGCAGAGGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113531 36 -    438239 CTGGGTGGCAGGAGCCCAGCGGGTAGTGCAGAGGCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152197 36 -    514179 CTGGGCGGCAGGAGCCCAGCGGGTAGTGCAGAGGCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801203 36 + 204313951 CCGGGTGGCAGGACCCCAGCGGGCAGTGCAGAGGCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962526 36 +  16417988 CCGGGTGGCAGGAGCCCAGTGGGCAGTGCAGAGGAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       40736 36 +    298490 CCGGGTGGCAGGAGCCCAGCAGGCAGTGCAGAGGCA
i cebCap1.NW_016108158v1   I 2392 I 70
s otoGar3.GL873745           1846411 27 -   2165740 -CCAGTAGCAGGGTCCCC--------CTCAGAGGAA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=9013.000000
s hg38.chr5_KI270793v1_alt     19140 9 +    126136 ------TGGACGAG---G
s panTro5.chr5             181285058 9 - 181907262 ------TGGACGAG---G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006827 9 - 183735486 ------TGGACGAG---G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97138 9 +    698298 ------TGGACGAG---G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521462 9 - 121039945 ------TGGATGAG---G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475286 9 - 180051392 ------TGAACGAGG---
i rheMac8.chr6             C 0 I 13
s macFas5.chr6             181206414 8 - 181584905 ------TGAACGAG----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201268 8 -   1764207 ------TGAACGAG----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215794 9 -  16742782 ------TGAACGAG-G--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525167 8 -  91010382 ------TGAACGAG----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113567 8 -    438239 ------TGAACGAG----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152233 9 -    514179 ------TGAACGAG--G-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801239 9 + 204313951 ------CGGACAAG---G
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962562 9 +  16417988 ------CGGACAAG---G
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1846438 9 -   2165740 GAGCTGTGG---------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e cebCap1.NW_016108158v1       40772 70 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=70322.000000
s hg38.chr5_KI270793v1_alt     19149 16 +    126136 GCCAGGGAGGCAGGTG
s panTro5.chr5             181285067 16 - 181907262 GCCGGGGAGGCAGGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006836 16 - 183735486 GCCGGGGAGGCAGGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97147 16 +    698298 GCCGGGGAGGCGGGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521471 16 - 121039945 GCGGGGGAGGTGGGTG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181206422 16 - 181584905 GCTGAGGAGACAGGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201276 16 -   1764207 GCTGAGGAGACAGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215803 15 -  16742782 -CTGAGGAGGCAGGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525175 16 -  91010382 GCTGAGGAGGCAGGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113575 16 -    438239 GCTGAGGAGGCAGGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152242 15 -    514179 -CTGAGGAGGCAGGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801248 16 + 204313951 GTGGAGGGGGTGGGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962571 16 +  16417988 GTAGAGGGGGTGGGTG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1846447  5 -   2165740 -TCGGG----------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e cebCap1.NW_016108158v1       40772 70 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I
e rheMac8.chr6             179475295 13 - 180051392 I

a score=87484.000000
s hg38.chr5_KI270793v1_alt     19165 18 +    126136 GCACGAGCCAC---------------------------CTGCTCT
s panTro5.chr5             181285083 18 - 181907262 GCACAAGCCAC---------------------------CTGCTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006852 18 - 183735486 GCACGAGCCAC---------------------------CTGCTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97163 18 +    698298 GCACGAGCCAC---------------------------CTGCTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521487 18 - 121039945 GCACGAGCCAC---------------------------CTGCTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475308 18 - 180051392 GTACGAGCCAC---------------------------CGGCTGC
i rheMac8.chr6             I 13 C 0
s macFas5.chr6             181206438 18 - 181584905 GTACGAGCCAC---------------------------CGGCTGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201292 18 -   1764207 GTACGAGCCAC---------------------------CGGCTGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215818 18 -  16742782 GTACGAGCCAC---------------------------CGGCTGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525191 18 -  91010382 GTACGAGCCAC---------------------------CGGCTGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113591 18 -    438239 GTACGAGCCAC---------------------------CGGCTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152257 18 -    514179 GTACGAGCCAC---------------------------CTGCTGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801264 45 + 204313951 GCATGAGCCACCTGGAGACCCGTCCTGAGTGCGCCAGCCTGCTGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962587 45 +  16417988 GCATGAGCCACCTGGAGACCCGTCCTGAGTGCGCCAGGCTGCTGC
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1846452  5 -   2165740 --------------------------------------CTGTT--
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e cebCap1.NW_016108158v1       40772 70 +    298490 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=439270.000000
s hg38.chr5_KI270793v1_alt     19183 67 +    126136 CCACATCCTTC------------TCGAGAGGAAAGGAGGTGCCGGCCCACCCTG--CCCACAGCTCCTCGGCGAAGCCGCG
s panTro5.chr5             181285101 67 - 181907262 CCACATCCTTC------------TCAAGAGGAAAGGAGGTGCCGGCCCACCCTG--CCCACAGCTCCTCGGCGAAGCCGCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006870 67 - 183735486 CCACATCCTTC------------TCAAGAGGAAAGGAGGTGCCGGCCCACCCTG--CCCACAGCTCCTCGGCGAAGCCGCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97181 67 +    698298 CCACATCCTTC------------TCGAGAGGAAAGGAGGTGCGGGCCCACCCTG--CCCACAGCTCCTCGGCGAAGCCGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521505 67 - 121039945 CCACATCCTTC------------TCGAGAGGAAAGGAGGTGCCGGCCCACCCTG--CCCACAGCTCCTCGGTGAAGCCACG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475326 58 - 180051392 TCACATCCTTC------------TCGAGAGGAAAGGAGGTGCCGGCCCACCCTG--CCCACAGTTCCTAAAC---------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206456 58 - 181584905 TCACATCCTTC------------TCGAGAGGAAAGGAGGTGCCGGCCCACCCTG--CCCACAGCTCCTAAAC---------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201310 58 -   1764207 TCACATCCTTC------------TCGAGAGGAAAGGAGGTGCCGGCCCACCCTG--CCCACAGCTCCTAAAC---------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215836 58 -  16742782 TCACATCCTTC------------TCGAGAGGAAAGGAGGTGCCGGCCCACCCTG--CCCACAGCTCCTAAAC---------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525209 58 -  91010382 TCATATCCTTC------------TCGAGAGGAAAGGAGGTGCTGGCCCACCCTG--CCCACAGCTCCTAAAC---------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113609 58 -    438239 TCACATCCTTC------------TCGAGAGGAAAGGAGGTGCCGGCCCACCCTG--CCCACAGCTCCTAAAC---------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152275 58 -    514179 TCACATCCTTC------------TCGAGAGGAAAGGAGGTGCCGGCCCACCCTG--CCCACAGCTCCTAAAC---------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801309 65 + 204313951 CCACATTCTTC------------TGGAGAGGAAAGCAGGCGCCGG-CCACCCT---CCCCCAGCTCCTTGGCCAGGCCGCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962632 62 +  16417988 CCACG---TCC------------TGGAGAGGAAAGGAGGCGCCAG-CCACCCT---CCCCCAGCTCCTTGGCGAGGCCGCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       40842 65 +    298490 CCACGTCCTTC------------TGGAGAGGAAAGGAGGCGCCGG-CCACCCT---CCCCCAGCTCCTCGGCGAGGCTGCA
i cebCap1.NW_016108158v1   I 70 C 0
s otoGar3.GL873745           1846457 71 -   2165740 --ACATCCCTTGTGTTAGGCCAACTGGAAGGAAGGAAGGTGCC------CTCTGGAGCTGCAGCTCATCAGT--GGCAGGA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25364132 1076 -  25620257 I
e canFam3.chr34             11685982 2001 +  42124431 I

a score=1146821.000000
s hg38.chr5_KI270793v1_alt     19250 105 +    126136 TCTGGTCCAGGGCCAGCCGC-CCCTTTGC--TGGTTTCAGTTCCTCCT-----TTATCCATTCATAAACGTTGAACAAAAGCGCTCTTTTCCCTCACGGTATCTCTAGCAGTT
s panTro5.chr5             181285168 105 - 181907262 TCTGGTCCAGGGCCAGCCGC-CCCTTTGC--TGGTTTCAGTTCCTCCT-----TTATCCATTCATAAACGTTGAACAAAAGCGCTCTTTTCCCTCACGGTATCTCTAGCAGTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183006937 105 - 183735486 TCTGGTCCAGGGCCAGCCGC-CCCTTTGC--TGGTTTCAGTTCCTCCT-----TTATCCATTCATAAACGTTGAACAAAAGCGCTCTTTTCCCTCACGGTATCTCTAGCAGTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97248 105 +    698298 TCTGGTCCAGGGCCAGCCGC-CCCTTTGC--TGGTTTCAGTTCCTCCT-----TTATCCATTCATAAACGTTGAACAAAAGCGCTCTTTTCCCTCACGGTATCTCTAGCAGTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521572 105 - 121039945 TCTGGTCCGGGGCCAGCCGC-CCCTTTGC--TGGTTTCAGTTCCTCCT-----TTATCCATTCATAAACGTTGAACAAAAGCACTCTTTTCCCTCACGGTATCTCTAGCAGTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475384 104 - 180051392 -CTGGTCCAGGGCCAGCCGC-CCCTTTGT--TGGTTTCGGTTCCTCCT-----TTATCCATTCATAAATGTTGAACAAAAGCGCTCTTTTCCCTCACGGTATCTCTAGCAGTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206514 104 - 181584905 -CTGGTCCAGGGCCAGCCGC-CCCTTTGT--TGGTTTCGGTTCCTCCT-----TTATCCATTCATAAATGTTGAACAAAAGCGCTCTTTTCCCTCACGGTATCTCTAGCAGTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201368 104 -   1764207 -CTGGTCCAGGGCCAGCTGC-CCCTTTGT--TGGTTTCGGTTCCTCCT-----TTATCCATTCATAAATGTTGAACAAAAGCGCTCTTTTCCCTCACGGTATCTCTAGCAGTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215894 104 -  16742782 -CTGGTCCAGGGCCAGCCGC-CCCTTTGT--TGGTTTCAGTTCCTCCT-----TTATCCATTCATAAATGTTGAACAAAAGCGCTCTTTTCCCTCACGGTATCTCTAGCAGTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525267 104 -  91010382 -CTGGTCCAGGGCCAGCCGC-CCCTTTGT--TGGTTTCAGTTCCTCCT-----TTATCCATTCATAAATGTTGAACAAAAGCGCTCTTTTCCCTCCCGGTATCTCTAGCAGTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113667 104 -    438239 -CTGGTCCAGGGCCAGCCGC-CCCTTTGT--TGGTTTCAGTTCCTCCT-----TTATCCATTCATAAATGTTGAACAAAAGCGCTCTTTTCCCTCACGGTATCTCTAGCAGTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152333 104 -    514179 -CTGGTCCAGGGCCAGCCGC-CCCTTTGC--TGGTTTCAGTTCCTCCT-----TTATCCATTCATAAATGTTGAACAAAAGCGCTTTTTTCCCTCACGGTATCTCTAGCAGTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801374 104 + 204313951 TCTGGTCCAGCGCCAGCCAC-CTTCTTGC--TGGTTTCGGTTCCTCCT-----TTATCCATTCATAAACGTTGAACAAAAGTGCTCTTTTCCC-CACGATATCTCCAGCCGTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962694 104 +  16417988 TCTGGTCCAGGGCCAGCCAC-CCTCTTGC--TGGTTTCGGTTCCTCCT-----TTATTCATTCATAAACGTCGAACAAAAGCGCTCTTTTCCC-CACAGTATCTCCAGCCATT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       40907 104 +    298490 TCTGGTCCAGGGCCAGCCAC-CCTTTTGC--TGGTTTCGGTTCCTCCT-----TTATCCATTCATAAACGTTGAACAAAAGCGCTCTTTTCCC-CACTGTATCTCCAGACGTT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25365208 104 -  25620257 TCTGGTCCAGGGCCAGCCAC-CCCTTTGC--TGGTTTCGGTTCCTCCT-----TTATCCATTCATAAACGTTGAACAAAAGCGCTGTTTTCCC-CACGGTATCTCCAGCCGTT
i aotNan1.NW_018503740v1   I 1076 C 0
s otoGar3.GL873745           1846528 112 -   2165740 TCTGGTCAGGGGCCAGCTGCTCCCTTTGTTGTGGGTATGTTTCCTTCTTGTGCTCATTCATTCACAAG-GCTGAACAAAAGAACCTTTTTCCCTAGCAGTATCTCCAGCAGTT
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11685982 2001 +  42124431 I

a score=1386341.000000
s hg38.chr5_KI270793v1_alt     19355 128 +    126136 AAGATCAACACCAATATTTGAGAACTGTCAATACTGCATTTTACCCA--------CTTCCCAAATGTGAAACCGGAAGGCACACGTAGCCCTTGC-TGGGCTGTTTC--CAGTGAACACAGTTGAGGGTGGGCTTGGGG
s panTro5.chr5             181285273 128 - 181907262 AAGATCAACACCAATATTTGAGAACTGTCAATACTGCATTTTACCCA--------CTTCCCAAATGTGAAACCGGAAGGCACACGTAGCCCTTGC-TGGGCTGTTTC--CAGTGAACACAGTTGAGGGTGGGCTTGGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007042 128 - 183735486 AAGATCAACACCAATATTTGAGAACTGTCAATACTGCATTTTACCCA--------CTTCCCAAATGTGAAACCAGAAGGCACACGTAGCCCTTGC-TGGGCTGTTTC--CAGTGAACACAGTTGAGGGTGGGCTTGGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97353 128 +    698298 AAGATCAACACCAATATTTGAGAACTGTCAATACCGCATTTTACCCA--------CTTCCCAAATGTGAAACCGGAAGGCACACGTAGCCCTTGC-TGGGCTGTTTC--CAGTGAACACAGCTGAGGGTGGGCTTGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521677 133 - 121039945 AAGATCAACATCAATATTTGAGAACTGTCAATACCGCATTTTACCCACTAAC---CTTCCCAAAAGTGAAACCGGATGGCACACGTAGCCCTTGC-TGGGCTGTTTC--CAGTGAACACAGTTGAGGGCGGGCTTGGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475488 133 - 180051392 AAGATCAACATCAATATTTGAGAACTGTCAATATCGCATTTTACCCACTGAC---CTTCCCAAATGTGAGACGGGAAGGCACGCGTAGCCCTTGC-TGGGCCGTTTC--AGGTGAGCACAGTTGAGGGTGGGCTTGGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206618 133 - 181584905 AAGATCAACATCAATATTTGAGAACTGTCAATATCGCATTTTACCCACTGAC---CTTCCCAAATGTGAGACGGGAAGGCACGCGTAGCCCTTGC-TGGGCCGTTTC--AGGTGAGCACAGTTGAGGGTGGGCTTGGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201472 133 -   1764207 AAGATCAACATCAATATTTGAGAACTGTCAATATCGCATTTTACCCACTGAC---CTTCCCAAATGTGAGACGGGAAGGCACGCGTAGCCCTTGC-TGGGCCGTTTC--AGGTGAGCACAGTTGAGGGTGGGCTTGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      215998 133 -  16742782 AAGATCAACATCAATATTTGAGAACTGTCAATATCGCATTTTACCCATTAAC---CTTCCCAAATGTGAGACGGGAAGGCACGCGTAGCCCTTGC-TGGGCCGTTTC--AGGTGAGCACAGCTGAGGGTGGGCTTGGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525371 133 -  91010382 AAGATCAACATCAATATTTGAGAACTGTCAGTATCGCATTTTACCCACTAAC---CTTCCCAAATGGGAAACGGGAAGGCACGCGTAGCCCTTGC-TGGGCTGTCTC--AGGTGAGCACAGTTGAGGGTGGGCTTGGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113771 133 -    438239 AAGATCAACATCAATATTTGAGAACTGTCAATATCGCATTTTACCCACTAAC---CTTCCCAAATGTGAGACGGGAAGGCACGCGTAGCCCTTGC-TGGGCCGTTTC--AGGTGAGCACAGTTGAGGGTGGGCTTGGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152437 133 -    514179 AAGATCAACATCAATATTTGAGAACTGTCAATATCGCATTTTACCCACTAAC---CTTCCCAAATGTGAAACGGGAAGGCATGCGGAGCCCTTGC-TGGGCCGTTTC--AGGTGAGCACAGTTGAGGGTGGGCTTGGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801478 132 + 204313951 AAGGTCAACATCAATCTTTGAGAACTGTCAGTACCGCATTTTACCCACTAAC---CTTCCCAGGTGTG-TATGAGAAGGCATGCGTGGCCCTTGC-GGGGCTGTTTT--TAGTGAACACAGTTGAGGGTGGGCTTGGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962798 132 +  16417988 AAGGTCAACATCAATATTTGAGAACTGTCAGTACCGCATTTTACCCACTAAC---CCTCCCAAGTGTG-GATGGGAAGGCAGGCGTAGCCCTTGC-GGGGCTGTTTC--TGGTGAACACAGTTGAGGATGGGCTTGGGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       41011 132 +    298490 AAGGTCAACATCAATATTTGAGAACTGTCAGTACAGCATTTTACCCACTAGC---TTTCCCAAGTGTG-GATGGGAAGGCATGCGTGGCCCTTGC-GGGGCTGTTTC--TAGTGAACACAGTTGAGGGTGGGCTTGGGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25365312 132 -  25620257 AAGGTCAACATCAATCTTTGAGAACCGTCAGTACCGCATTTTACCCACTAAC---CTTCCCGAGTGTG-GATGGGAAGGCGTGCGTGGCCCTTGC-GGGGCTGTTTC--TAGTGAACACAGTTGAGGGAAGGCTTGGGG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1846640 139 -   2165740 AAGATCAACATCAATATTTGTGAATGAGCAATATAGCACTTTACCAACTAACTTTTTTCCAAAATGTGAAATGTGATGGCATACAAGTCCCTTTCTTGGACTGTTTTTAAGACAAACACAATTGAGGGTGGGCTTGGGG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11687983 133 +  42124431 AGGAGTAGCATTACTACCTGCCAACTGTCTGCATGTCCCTCAGCCAGCCACCA--TCTCCTCAGTGTGAGTTGAGGTGGGGCCTG-GGCCCTGTC-TGCACTGGTTT--AAGGTAACACTGTCAAGGGTGGTTTTGGGG
i canFam3.chr34            I 2001 I 1077

a score=21669.000000
s hg38.chr5_KI270793v1_alt     19483 4 +    126136 GTTC
s panTro5.chr5             181285401 4 - 181907262 GTTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007170 4 - 183735486 GTTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97481 4 +    698298 GTTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521810 4 - 121039945 GTTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475621 4 - 180051392 GTTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206751 4 - 181584905 GTTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201605 4 -   1764207 GTTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216131 3 -  16742782 G-TC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525504 4 -  91010382 GTTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113904 2 -    438239 --TC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152570 4 -    514179 GTTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801610 4 + 204313951 ATTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962930 4 +  16417988 ATTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       41143 4 +    298490 ATTC
i cebCap1.NW_016108158v1   C 0 I 8
s aotNan1.NW_018503740v1    25365444 4 -  25620257 ATTC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1846779 3 -   2165740 GCC-
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11688116 1077 +  42124431 I

a score=554571.000000
s hg38.chr5_KI270793v1_alt     19487  96 +    126136 TCCGCATCGTAATGTCTTAGGAGGGGGTGGGGC----CACACCTTCCCACCTTGTCCGAGTAACA------GGCCACGTGTGCGGTTTAGTTCACACCGTGGAGGA
s panTro5.chr5             181285405  96 - 181907262 TCGGCATCGTAATGTCTTAGGAGGGGGTGGGGC----CACACCTTCCCACCTTGTCCGAGTAACA------GGCCACACGTGCGGTTTAGTTCACACCGTGGAGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007174  96 - 183735486 TCGGCATCGTAATGTCTTAGGAGGGGGTGGGGC----CACACCTTCCCACCTTGTCCGAGTAACA------GGCCACATGTGCGGTTTAGTTCACACCGTGGAGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97485  96 +    698298 TCCACATCGTAATGTCTTAGGAGGGGGTGGGGC----CACACCTTCCTACCTTGTCCGAGTAACA------GGCCACGTGTGCGGTTTAGTTCATACCGTGGAGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521814  96 - 121039945 TCCACGTTGTAATGTCTTAGGAGGGGGTGGGGC----CACACCTTCCCACCTTGTCCAAGTAACA------GGCCACGTGTGCGGTTTAGTTCACAGTGTGGAGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475625  96 - 180051392 CCTGCATCATAACGTCTTAGGAGGGGGTGGGGC----CACACCTTCCAGCCTTGTCTGAGTGACA------GGCCATGTGTGCAGTTTAGTTCACACCGTGGAGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206755  96 - 181584905 CCTGCATCATAACGTCTTAGGAGGGGGTGGGGC----CACACCTTCCAGCCTTGTCTGAGTGACA------GGCCATGTGTGCAGTTTAGTTCACACCGTGGAGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201609  96 -   1764207 CCTGCATCATAACGTCTTAGGAGGGGGTGGGGC----CACACCTTCCAGCCTTGTCTGAGTGACA------GGCCATGTGTGCAGTTTAGTTCACACCGTGGAGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216134  96 -  16742782 CCTGCATCGTAACGTCTTAGGAGGGGGTGGGGC----CACACCTTCCAGCCTTGTCTGAGTGACA------GGCCATGTGTGCAGTTTAGTTCACACCGTGTAGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525508  93 -  91010382 CCTGCATTGTAACGTTATAGGAGGGGGTGGGGC----CACACCTTCCAGCCTTGTCCGAGTGACA------GGCCATGTGTGCAGTTTAGTTCACACCGT---GGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      113906  96 -    438239 CCTGCATCGTAACGTCTTAGGAGGGGGTGGGGC----CACACCTTCCAGCCTTGTCTGAGTGACA------GGCCATGTGTGCAGTTTAGTTCACACTGTGGAGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152574  96 -    514179 CCTGCACCGTAACGTCTTAGGAGGGGGTGGGGC----CACACCTTCCAGCCTTGTCCAAGTGACA------GGCCATATGTGCAGTTTAGTTTACACCGTGGAGGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801614  62 + 204313951 CCTGCATCGCAACGTCTTA--------------------------------------GAGTAACA------GGCTGTGTGTGCGGTTCAGTCCGCACCATGGAGGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962934   8 +  16417988 CCT--------------------------------------------------------------------------------------------------GAGGA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25365448  90 -  25620257 CCTGCATCGCAACATCTTAGAG------GGTGC----AACATCCCGCCGCCGTGCCCGAGTAACA------GGCCCTGTGTGCTGTTCAGTCTGCACAGCGGAGGA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1846782 101 -   2165740 TCTGCATCCTAACATGTTAATGAGGATAAATGCTCTGTCCACAGTAATGCCTCATC-ACGTGACATTTGTTAGCCACACGTACA----AGTCCTTAGGCTGGTGGT
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       41147   8 +    298490 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=2579693.000000
s hg38.chr5_KI270793v1_alt     19583 265 +    126136 GGGGAGTGTGAGGGCAGCG----GGTGGGCCGCTGTGTCCTGGTCTCTGTCCTGCTGTGTGGCCAGGGAGGGAGTGCG-GCTGTCCGATTTAGGTTGAAACACCGTCCATCGGCATCTCTGGGGGATGTTGCCACTGCCCTTGACTCCTGCCCTTGTGTCTGGAAAGGGGAGGCTTCAGAGTGAGTGGCCCACAGCCTTCCAGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCCCCATGGCTGTGGGCC---------GGAGCCCTGTAATAATGGGAAG
s panTro5.chr5             181285501 265 - 181907262 GGGGAGTGTGAGGGCAGCG----GGTGGGCCGCTGTGTCCTGGTCTCTGTCCTGCTGTGTGGCCAGGGAGGGAGTGCG-GCTGTCCGATTTAGGTTGAAACACCATCCATCGGCATCTCTGGGGGATGTTGCCACTGCCCTTGACTCCTGCCCTTGTGTCTGGAAAGGGGAGGCTTCAGAGTGAGTGGCCCGCAGCCTTCCAGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCCCCATGGCTGTGGGCC---------GGAGCCCTGTAATAATGGGAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007270 265 - 183735486 GGGGAGTGTGAGGGCAGCG----GGTGGGCCGCTGTGTCCTGGTCTCTGTCCTGCTGTGTGGCCAGGGAGGGAGTGCG-GCTGTCCGATTTAGGTTGAAACACCATCCATCGGCATCTCTGGGGGATGTTGCCACTGCCCTTGACTCCTGCCCTGGTGTCTGGAAAGGGGAGGCTTCAGAGTGAGTGGCCCGCAGCCTTCCAGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCCCCATGGCTGTGGGCC---------GGAGCCCTGTAATAATGGGAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97581 265 +    698298 GGGGAGTGTGAGGGCAGCG----GGTGGGCCGCTGTGTCCTGGTCTCGGTCCTGCTGTGTGGCCAGGGAGGGAGTGCG-GCTGTCTGATTTAGGTTGAAACACCGTCCATCGGCATCTCTGGGGGATGCTGCCACTGCCCTTGACTCCTGCCCTTGTGTCTGGAAAGGGGAGGCTTCAGAGTGAGTGGCCCGCAGCCTTCCAGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCCCCATGGCTGTGGGCC---------GGAGCCCTGTAGTGATGGGAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120521910 265 - 121039945 GGGGAGTGTGAGGGCAGCG----GGTGGGCCACTGTGTCCTGGTCTCTGTCCCACTGTGTGGCCAGGGAGGGAGTGCA-GCTGTCCAGTTTAGGTTGAAACACCATCCATCGACATCTTTGGGGGATGCTGCCACTGCCCTTGACTCCTGCCCTTGTGTCTGGAAAGGGGAGGCTTCAGAGTGAATGGCCCGCAGCCTTCCAGTTGCAGGAGCT-----GGTATGGGAAGGGGCATCCCCATGGCTGTGGGCC---------GGAGCCCTGTAACGATGGGAAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475721 265 - 180051392 AAGGAGTGTGAGGGCAGCG----GGTGGGCTGCTGTGTCCTGGTCTCTGTCCCGCTGTGTGGCCAGGGAGAGACTGCG-GCTGTCCGGTTTAGGTTGAAACACCATCCATCGACATCTTTGGGGGATGCTGCCACTGCGCTTGACTCCTGCCCTTGTGTCTGGAAAGGAGAGACCTCAGAGGGAGTGGCCCGCAGCCTTCTAGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCACCATGGCTGTGGGCC---------GGAGCCCTGTAACGATGGGAAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181206851 265 - 181584905 AAGGAGTGTGAGGGCAGCG----GGTGGGCTGCTGTGTCCTGGTCTCTGTCCCGCTGTGTGGCCAGGGAGAGACTGCG-GCTGTCCGGTTTAGGTTGAAACACCATCCATCGACATCTTTGGGGGATGCTGCCACTGCCCTTGACTCCTGCCCTTGTGTCTGGAAAGGAGAGACCTCAGAGGGAGTGGCCCGCAGCCTTCTAGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCACCATGGCTGTGGGCC---------GGAGCCCTGTAACGATGGGAAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201705 265 -   1764207 AGGGAGTGTGAGGGCAGCG----GGTGGGCTGCTGTGTCCTGGTCTCTGTCCCGCTGTGTGGCCAGGGAGAGACTGCG-GCTGTCCGGTTTAGGTTGAAACACCATCCATCGACATCTTTGGGGGATGCTGCCACTGCCCTTGACTCCTGCCCTTGTGTCTGGAAAGGAGAGACCTCAGAGGGAGTGGCCCGCAGCCTTCTAGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCACCATGGCTGTGGGCC---------GGAGCCCTGTAACGATGGGAAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216230 265 -  16742782 AGGGAGTGTGAGGGCAGCG----GGTGGGCCGCTGTGTCCTGGTCTCTGTCCCGCTGTGTGGCCAGGGAGAGACTGCG-GCTGTCCGGTTTAGGTTGAAACACCATCCATCGACATCTTTGGGGGATGCTGCCACTGCCCTTGACTCCTGCCCTTGTGTCTGGAAAGGAGAGACCTCAGAGGGAGTGGCCCGCAGCCTTCCGGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCACCATGGCTGTGGGCC---------GGAGCCCTGTAACGATGGGAAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525601 265 -  91010382 AGGGAGTGTGAGGGCAGCG----GGTGGGCCGCTGTGTCCTGGTCTCTGTCCCGCTGTGTGGCCAGGGAGGGACAGTG-GCTGTCCGGTTTAGGTTGAAACACCGTCCATCGACATCATTGGGGGATGCTGCCACTGCCCTTGACTCCTGCCCTTGTGTCTGGAAAGGAGAGACCTCAGAGGGAATGGCCTGCAGCCTTCCAGTTGCAGGAGCT-----GGTGTGGGACGGGGCATCCCCATGGCTGTGGGCC---------AGAGCCCTGTAATGATGGGAAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114002 265 -    438239 AGGGAGTGTGAGGGCAGCG----GGTGGGCCGCTGTGTCCTGGTCTCTGTCCCGCTGTGTGGCCAGGGAGAGACTGCG-GCTGTCCGGTTTAGGTTGAAACACCATCCATCGACATCTCTGGGGGATGCTGCCACTGCCCTTGACTCCTGCCCTTGTGTCTGGAAAGGAGCGACCTCAGAGGGAGTGGCCCGCGGCCTTCCAGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCACCATGGCTGTGGGCC---------GGAGCCCTGTAACGATGGGAAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152670 265 -    514179 AGGGAGAGTGAGGGCAGCG----GGTGGGCCACTGTGTCCTGGTCTCTGTCCCGCTGTGTGGCCGGGGAGGGACTGCG-GCTGTCTGGTGTAGGTTGAAACACCGTCCATCGACATCTTTGGGGGATGCTGCCACTGCCCTTGACTCCTGCCCTTGTGTCTGGAAAGGAGAGACCTCAGAGGGAGTGGCCCGCAGCTTTCCAGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCCCCATGGCTGTGGGCC---------AGAGCCCTGTAACGATGGGAAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801676 261 + 204313951 GGGGAGTGTGAGGGCAGCT----GGTGGGCTGCAGTGTCCTGGTCTCTGTCCTATTGTGTGGCTT-GGAGGGAGTTT--GCTGTCGGGTTTGGGTTGAAACACTGTCC-CCAGCATCTTTGGGGGACACTGCAACTACCTGTGACTCCTGCTGTCGTGTCTGGAAAGGGGAGGCTTCGGAGTGAGTGGCCCACGGCCTTCCCATTGCAGGAGCT-----GGTATGGGAAGGGGCATCCCCGTGGCTC-GGGCT---------GGAGCCCTGTAACAATGGGACA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15962942 262 +  16417988 GGGGAGTGTGAGAGCAGCC----GGCGGGCCGCTGTGGCCTGGTCTCTGTCCTGCTCTGTGGCTC-GGAGGGAGTGC--GCTGTCGGGTTTGGGTTGAAACACCGTCC-CCAGCATCTTTGGGGGACACTGTCACGGCCCGTGACTCCTGCTGTCGTGTCTGGAAAGGGGAGGCTTTGGAGTGAGTGGCCCACGGCCTTCCCGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCCCCATGGCTCTGGGCT---------GGAGCCCTGTAACGATGGGACA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       41155 262 +    298490 GGGGAGTGTGAGGGCAGCC----GGTAGGCCGCTGTGCCCTGGTCTCTGTCCCGCTGTGTGGCTC-GGAGGGAGTGC--GCTGTCGGGTTTGGGTTGAAACACCATCC-CCAGCATCTTTGGGGGACACTGCCACTGCCTGTGACTCCTGCTGTCGTGTCTGGAAAGGGGAGGCTTCGGAGTGAGTGTCCCATGGCCTTCCCGTTGCAGGAGCT-----GGTGTGGGAAGGGGCAACCCCGTGGCTCTGGGCT---------GGAGCCCTGTAACGATGGGACA
i cebCap1.NW_016108158v1   I 8 C 0
s aotNan1.NW_018503740v1    25365538 266 -  25620257 GAGGAGTGTGAGGGCAGCCGGTGGGTGGGCCGCTGTGTCCTGCTCTCTGTCCCGCTGTGTGGCTC-GGAGGGAGCGT--GCTGCCGGGTGTGGGTTGAAACACCGTCC-CCAGCATCTCTGGGGGACACTGCCACTGCCCGTGACTCCGGCTGTCGTGTCTGGAAAGGGGAGGCTTCGGAGTGAGTGGCCCACGGCCTTCCCGTTGCAGGAGCT-----GGTGTGGGAAGGGGCATCCCCGTGGCTCTGGGCT---------GGAATCCTGTAACGATGGGACG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1846883 257 -   2165740 AGGGGGCCT-AGGGCCTTG----------------------GGCCTGTGACCCTCTGTGTGGCTAGCGAGAAAATCTGAGTAGTCTGACCAGGGCCATAGCACCA-CTGTCAGCATCT-TGGATAATGCTTCCACTGCATAAAATTCCTGCC-TCACTTCTGGAAAGGTATGATTTTAGGATGAGTGGTCCAAGGTCATCC-GCTGAGGGTGCCAGCAGGGTCTATGTAAGGCTAATTGCAGGGTTGGGGTCCCTAGCTAAAGGGGCCCTTTCACCACAGGCAG
i otoGar3.GL873745         C 0 I 1411
e canFam3.chr34             11688116 1077 +  42124431 I

a score=337176.000000
s hg38.chr5_KI270793v1_alt     19848 36 +    126136 TTTCAGTGCCCTCATAGGAGTTTCACTGGAGCAGGT
s panTro5.chr5             181285766 36 - 181907262 TTTCAGTGCCCTCATAGGAGTTTCACTGGAGCAGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007535 36 - 183735486 TTTCAGTGCCCTCATAGGAGTTTCACTGGAGCAGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97846 36 +    698298 TTTCAGTGCCCTCATAGGAGTTTCGCTGGAGCAGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522175 36 - 121039945 TTTCAGTGCCCTCATAGGAGTTTCCCTGGAGCAGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179475986 36 - 180051392 TTTCAGTGCCCTCATAGGAGTTGCCCTGGAGCAGGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207116 36 - 181584905 TTTCAGTGCCCTCATAGGAGTTGCCCTGGAGCAGGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      201970 36 -   1764207 TTTCATTGCCCTCATAGGAGTTGCCCTGGAGCACGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216495 36 -  16742782 TTTCAGTGCCCTCATAGGAGTTGCCCTGGAGCAGGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525866 36 -  91010382 TTTCAGTGCCCTCATAGGAGTTGCCCTGGAGCAGGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114267 36 -    438239 TTTCAGTGCCCTCATAGGAGTTGCCCTGGAGCAGGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152935 36 -    514179 TTTCAGTGCCCTCATAGGAGTTGCCCTGGAGCAGGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801937 36 + 204313951 TTTCAATGCCCTCAGAGGTGTTTCCCTGGAGCGGGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15963204 36 +  16417988 TATCAGCACCCTCAGACGCGTTTCCCTGGAGCGGGT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       41417 36 +    298490 TTTCAGTGCCCTCGGAGACATTTCCCTGGAGTGGGT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25365804 36 -  25620257 TTTCAGCGCCCTCAGAGGCGTTTCCCTGGAGCAGGT
i aotNan1.NW_018503740v1   C 0 I 99
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=475648.000000
s hg38.chr5_KI270793v1_alt     19884 142 +    126136 A-AATCGGT-CTGGGAGCTTGTGAACCGCTCTGGGCTGCTG--GGGCTGCACTG----------------------ACAACAAGCACAGAGCCCAGCTACAAGTGGCGTGGCTGCAGGAGACGCCCTGGAGACCTGAGACAGGCTGGGTGTCTCTGCTGTCCCAGGAC
s panTro5.chr5             181285802 165 - 181907262 ACAGTCGGT-CTGGGAGCTTGTGAACCGCTCTGGGCTGCTG--GGGCTGCACTGACAACAAGCACAGAGCCCAGCTACAACAAGCACAGAGCCCAGCTACAAGTGGCGTGGCTGCAGGAGACGCCCTGGAGACCTGAGACAGGCTGGGTGTCTCTGCTGTCCCAGGAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007571 143 - 183735486 ACAGTCGGT-CTGGGAGCTTGTGAACCGCTCTGGGCTGCTG--GGGCTGCACTG----------------------ACAACAAGCACAGAGCCCAGCTACAAGTGGCGTGGCTGCAGGAGACGCCCTGGAGACCTGAGACAGGCTGGGTGTCTCTGCTGTCCCAGGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97882  63 +    698298 ACAGTCAGT-CTGGGAGCTTGTGAACCGCTCTGGGCTGCTG--GGGCTGCACTG-------------------------ACAAGCACAGAG-----------------------------------------------------------------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522211 143 - 121039945 ACCGTCGGT-CTGGGAGCTTGTGAACCGCTCTGGGCTGCTG--GGGCTGCACTG----------------------ACAAAATGCACAGAGCCCAGCTACAAGTGGTGTGGCTGCAGGAGATGCCCTGGAGCCCCGAGGCAGGCTGGGTGTCTCTACTGTCCCAGGAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179476022  68 - 180051392 ACAGTCGGT-CTGGGAGCTTGTGAACCGCTTTGGGCTGCTG--GGGCTGCACTG----------------------ACAGCATGCATAGAGCC---------------------------------------------------------------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207152  68 - 181584905 ACAGTCGGT-CTGGGAGCTTGTGAACCGCTTTGGGCTGCTG--GGGCTGCACTG----------------------ACAGCATGCATAGAGCC---------------------------------------------------------------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202006  68 -   1764207 ACAGTCGGT-CTGGGAGCTTGTGAACCGCTTTGGGCTGCTG--GGGCTGCACTG----------------------ACAGCATGCATAGAGCC---------------------------------------------------------------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216531  68 -  16742782 ACAGTCGGT-CTGGGAGCTTGTGAACCGCTTTGGGCTGCTG--GGGCTGCACTG----------------------ACAGCATGCATAGAGCC---------------------------------------------------------------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525902  68 -  91010382 ACAGTCGGT-CTGGGAGCTAGTGAACCGCTTTGGGCTGCTG--GGGCTGCACTG----------------------ACAGCATGCATAGAGCC---------------------------------------------------------------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114303  68 -    438239 ACAGTCGGT-CTGGGAGCTTGTGAACCGCTTTGGGCTGCTG--GGGCTGCACTG----------------------ACAGCATGCATAGAGCC---------------------------------------------------------------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      152971  68 -    514179 ACAGTCGGT-CTGGGAGCTTGTGAACCGCTTTGGGCTGCTG--GGGCTGCACTG----------------------ACAGCATGCATAGAGCC---------------------------------------------------------------------------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203801973 145 + 204313951 ACGGTCCGTCCCAGGAGCTTGTGAAATGCTCTGTGCTGCTGCTGGGCTGCACTG----------------------ACAGCACGCACGATCCC-AGCAGCGAGTGGCGTGGCCGTGGGAGACGCCCTGGAGACCAGAGGCAGGGTGTGCAGCTCTGCTGTCCCAGGAC
i calJac3.chr2             C 0 T 80
s saiBol1.JH378155          15963240 139 +  16417988 GCAGTGGGTCCCGGAAGCTTGTGAACTGCTCTGTGCTGCTGCTGGGCTGCACTG----------------------ACAGCACGCACAAACCC-AGCCACAAGTGGCCTGGCCGTGGGAGACGCCCTGGAAACCAGAGGCAGGGTGGGCAGCTCTGCTGTCC------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       41453 145 +    298490 GCGGTCGGTCCCAGGGGCTTGTGAACTGCTCTGTGCTGCTGCTGGGCTGCACTG----------------------ACAGCACGCACGAACCC-AGCAGCGAGTGGCATGGCCACGGGAGACGCCCTGGAAACCAGAGGCAGGGTGGGCAGCTCTGCTGTCCCAGGAC
i cebCap1.NW_016108158v1   C 0 I 37
e aotNan1.NW_018503740v1    25365840  99 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=546.000000
s hg38.chr5_KI270793v1_alt     20026 1 +    126136 A
s panTro5.chr5             181285967 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007714 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120522354 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25365840 99 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e cebCap1.NW_016108158v1       41598 37 +    298490 I
e saiBol1.JH378155          15963379 0 +  16417988 C
e calJac3.chr2             203802118 80 + 204313951 T
e canFam3.chr34             11688116 1077 +  42124431 I
e manLeu1.NW_012110441v1      114371 0 -    438239 C
e chlSab2.chr4              90525970 0 -  91010382 C
e cerAty1.NW_012009470v1      216599 0 -  16742782 C
e colAng1.NW_012118799v1      153039 0 -    514179 C
e macNem1.NW_012012389v1      202074 0 -   1764207 C
e macFas5.chr6             181207220 0 - 181584905 C
e rheMac8.chr6             179476090 0 - 180051392 C
e gorGor5.CYUI01015805v1       97945 0 +    698298 C

a score=56237.000000
s hg38.chr5_KI270793v1_alt     20027 15 +    126136 GAACCCAGCTACAAG
s panTro5.chr5             181285968 15 - 181907262 GAACCCAGCTACAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007715 15 - 183735486 GAACCCAGCTACAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97945 12 +    698298 ---CCCAGCTACAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522355 15 - 121039945 GAACCCAGCTACAAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179476090 10 - 180051392 -----CAGCTATGAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207220 10 - 181584905 -----CAGCTATGAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202074 10 -   1764207 -----CAGCTATGAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216599 10 -  16742782 -----CAGCTATGAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525970 10 -  91010382 -----CAGCTATGAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114371 10 -    438239 -----CAGCTATGAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153039 10 -    514179 -----CAGCTACGAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802038 15 + 204313951 GATCCCAGCAGCGAG
i calJac3.chr2             T 80 C 0
e aotNan1.NW_018503740v1    25365840 99 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e cebCap1.NW_016108158v1       41598 37 +    298490 I
e saiBol1.JH378155          15963379  0 +  16417988 C
e canFam3.chr34             11688116 1077 +  42124431 I

a score=301640.000000
s hg38.chr5_KI270793v1_alt     20042 41 +    126136 TGGCGTGGCTGCAGGAGACACCCAGGAGCCCCCAGGCAGGG
s panTro5.chr5             181285983 41 - 181907262 TGGCGTGGCTGCAGGAGACACCCAGGAGCCCCGAGGCAGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007730 41 - 183735486 TGGCGTGGCTGCAGGAGACACCCAGGAGCCCCGAGGCAGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97957 41 +    698298 TGGCGTGGCTGCAGGAGACACCCAGGAGCCCCGAGGCAGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522370 41 - 121039945 TGGCGTGGCTGCAGGAGACACCCAGGAGCCCCGAGGCAGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179476100 41 - 180051392 TGGCATGGCTGCAGGAGATGTCCAGGAGCCCCGAGGCAGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207230 41 - 181584905 TGGCATGGCTGCAGGAGATGTCCAGGAGCCCCGAGGCAGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202084 41 -   1764207 TGGCATGGCTGCAGGAGATGTCCAGGAGCCCCGAGGCAGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216609 41 -  16742782 TGGCATGGCTGCAGGAGATGTCCAGGAGCCCCGAGGCAGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90525980 41 -  91010382 TGGCGTGGCTGCAGGAGATGTCCAGGAGACCCGAGGCAGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114381 41 -    438239 TGGCATGGCTGCAGGAGATGTCCAGGAGCCCCGAGGCAGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153049 41 -    514179 TGGCGTGGCTGCAGGAGACATCCCGGAGACCCGAGGCAGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802053 41 + 204313951 TGGCGTGGCCGTGGGAGACGCCCTGGAGACCAGAGGCAGGG
i calJac3.chr2             C 0 I 24
s aotNan1.NW_018503740v1    25365939 41 -  25620257 TGGCGTGGCCGCGGGAGACACCCTGGAAACCAGAGGCGGGG
i aotNan1.NW_018503740v1   I 99 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e cebCap1.NW_016108158v1       41598 37 +    298490 I
e saiBol1.JH378155          15963379  0 +  16417988 C
e canFam3.chr34             11688116 1077 +  42124431 I

a score=487851.000000
s hg38.chr5_KI270793v1_alt     20083 69 +    126136 TGGGCGGCTCTGCTATCCCAGGACTGGGTCAGGACAGCTCAGCCCTCGCAGTCCTCAGCCAAGTGCTG-C
s panTro5.chr5             181286024 69 - 181907262 TGGGCGGCTCTGCTATCCCAGGACTGGGTCAGGACAGCTCAGCCCTCGCAGTCCTCGGCCAAGTGCTG-C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007771 69 - 183735486 TGGGCGGCTCTGCTATCCCAGGACTGGGTCAGGACAGCTCAGCCCTCGCAGTCCTCGGCCAAGTGCTG-C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       97998 69 +    698298 TGGGCGGCTCTGCTATCCCAGGACTGGGTCAGGACAGCTCAGCCCTCGCAGTCCTCGGCCAAGTGCTG-C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522411 69 - 121039945 TGGGTGTCTCTGCTGTCCCAGGACGGGGTCAGGACAGCTCAGCCCTCGCAGTCCTTGGCCAAGTGCTG-C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179476141 69 - 180051392 TGGGAGGCTCTGCTATCGCAGGACTGGGTCAGGACAGCTCAGCCCTTGCAGTCCTCGGCCAACTGCTG-C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207271 69 - 181584905 TGGGAGGCTCTGCTATCGCAGGACTGGGTCAGGACAGCTCAGCCCTTGCAGTCCTCGGCCAACTGCTG-C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202125 69 -   1764207 TGGGAGGCTCTGCTATCGCAGGAATGGGTCAGGACAGCTCAGCCCTTGCAGTCCTCGGCCAACTGCTG-C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216650 69 -  16742782 TGGGAGGCTCTGCTATCGCAGGACTGGGTCAGGACAGCTCAGCCCTTGCAGTCCTCGGCCACCTGCTG-C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90526021 69 -  91010382 TGGGCGGCTCTGCTATCGCAGGACTGGGTCAGGACAGCTCAGCCCTTGCGGTCCTCGGCCAAGTGCTG-C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114422 69 -    438239 TGGGAGGCTCTGCTATCGCAGGACTGGGTCAGGACAGCTCAGCCCTTGCAGTCCTCGGCCACCTGCTG-C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153090 69 -    514179 TGGGCGGCTCTGCTATCGCAGGACTGGGTCAGGACAGCTCAGCCCTTGTGGTCCTCAGCCAAGTGCTG-C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802118 43 + 204313951 ------------------------TGGG-CGGGACAGCTCGGTGCTCGTGGTCCTCGGCCACATGCCA--
i calJac3.chr2             I 24 C 0
s saiBol1.JH378155          15963379 50 +  16417988 ------------------CGGGACTGGGCCAGGACAGCTCAGCACTTGTGGTCCTTGGCCACGTGCCA--
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25365980 69 -  25620257 TGGGCAGCTCTGCAGTCCCAGGACTGGGCCAGGACAGCTCAGCGCTCGTGGTCCTCGGCCACGTGCCAC-
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e cebCap1.NW_016108158v1       41598 37 +    298490 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=722020.000000
s hg38.chr5_KI270793v1_alt     20152 77 +    126136 CCCGCTCTGCAAGGGGCCCAGAGGGCTCCCAGAGGCCTGCGGACCAGTGCTAGGcctcacatccctgaaccac---tcc--c
s panTro5.chr5             181286093 77 - 181907262 CCCGCTCTGCAAGGGGCCCAGAGGGCTCCCAGAGGCCTGCGGACCAGTGCTAGGcctcacatccctgaaccac---tcc--c
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007840 80 - 183735486 CCCGCTCTGCAAGGGGCCCAGAGGGCTCCCAGAGGCCTGCGGACCAGTGCTAGGCCTCACATCCCTGAACCTCACATCC--C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       98067 77 +    698298 CCCGCTCTGCAAGGGGCCCAGAGGGCTCCCACAGGCCTGCGGACCAGTGCTAGGcctcacatccctgaactac---tcc--c
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522480 76 - 121039945 CCCACTCCGCAAGGGGCCCAGAGGGCTCCCACAGGCCTGCGGACCAGTGCTAGGCCTCACATCCCTGAACCAC---TCC---
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179476210 77 - 180051392 CCCACTCTGCCAGGGGCCCAGAGGGCTCCCACAGGCCTGCGGACCGGTGCCAGGCCCCACATCCCTGAACCAC---TCC--C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207340 77 - 181584905 CCCACTCTGCCAGGGGCCCAGAGGGCTCCCACAGGCCTGCGGACCAGTGCCAGGCCCCACATCCCTGAACCAC---TCC--C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202194 77 -   1764207 CCCACTCTGCCAGGGGCCCAGAGGGCTCCCACAGGCCTGCGGACTGGTGCCAGGCCCCACATCCCTGAACCAC---TCC--C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216719 77 -  16742782 CCCACTCTGCCAGGGGCCCAGAGGGCTCCCACAGGCCTGCGGACCAGTGCCAGGCCCCACATCCCTGAACCAC---TCC--C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90526090 77 -  91010382 CCCACTCTGCCAGGGTCCCAGAGGGCTCCCACAGGCCTACGGACCAGTGCCAGGCCCCACATCCCTGAACCAC---TCC--C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114491 77 -    438239 CCCACTCTGCCAGGGGCCCAGAGGGCTCCCACAGGCCTGCGGACCAGTGCCAGGCCCCACATCCCTGAACCAC---TCC--C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153159 77 -    514179 TCCACTCTGCCAGAGGCCCAGAGGTCTCCCACAGGCCTGCAGACCAGTGCCAGGCCCCACATCCCTGAACCAC---TCC--C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802161 76 + 204313951 CCCACTCTGCAAGGAGCCCAGAGGGCTCCCCTAGGCCTTCGGGCCAGTGCCAGGCCCCACATCCCTGAGCCAC---TCC---
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15963429 76 +  16417988 CCCACTCAGCAAGGAGCCCAAAGAGCTCCCCAAGGCCTGCAGGCCAGTGCCAGGCCCCACATCCCTGAGCCAC---TCT---
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       41635 77 +    298490 CCCACTCTGCAAGGAGCCCAAAGGGCTCTCCCAGGCCTGCGGGCTAGTGCCAGACCCCACATCCCTGAGCCAC---TCCC--
i cebCap1.NW_016108158v1   I 37 I 5
s aotNan1.NW_018503740v1    25366049 76 -  25620257 -CCATTCTGCAAGGAACCCAGAGGGCTCCCCCAGGCCTGCGGGCCAGTGCCAGGCCCCACATCCCTGAGCCAC---TCC-C-
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=146709.000000
s hg38.chr5_KI270793v1_alt     20229 45 +    126136 tgacctcacatccctgaACACATGCAGGGGCCGGGCCTCAGCTGG
s panTro5.chr5             181286170 45 - 181907262 tgacctcacatccctgaACACATGCAGGGGCCGGGCCTCAGCTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007920 45 - 183735486 TGACCTCACATCCCTGAACACATGCAGGGGCCGGGCCTCAGCTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       98144 45 +    698298 tgacctcacatccctgaACACAAGCAGGGGCCGGGCCTCAGCTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522556 25 - 121039945 --------------------AAAGCAGGGGCCGGGCCTCAGCTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179476287 23 - 180051392 TA---------------------GCAGGGGCCGGGCCTCAGCT-G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207417 23 - 181584905 TA---------------------GCAGGGGCCGGGCCTCAGCT-G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202271 23 -   1764207 TA---------------------GCAGGGGCCGGGCCTCAGCT-G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216796 23 -  16742782 TA---------------------GCAGGGGCCGGGCCTCAGCT-G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90526167 24 -  91010382 TA---------------------GCAGTTGCCGGGCCTCAGCTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114568 23 -    438239 TA---------------------GCAGGGGCCGGGCCTCAGCT-G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153236 23 -    514179 TA---------------------GCAGGGGCCAGGCCTCAGCT-G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802237 25 + 204313951 --------------------CAGGCAGGGGCTGGGCCTCAGCTGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15963505 25 +  16417988 --------------------CAGGCAGGGGCCGGGCCTCAGCTGG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25366125 24 -  25620257 ---------------------AGGCAGGGGCCAGGCCTCAGCTGC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e cebCap1.NW_016108158v1       41712  5 +    298490 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=825266.000000
s hg38.chr5_KI270793v1_alt     20274 90 +    126136 GGG-GCATGGCACTGGGTGAGGTCAGAGGTGCTCCAAGCATGTGGCCTAGA-AGGTTTGTCCAAAACAAATTCTCTCCTGGACCCTGGAGGG--
s panTro5.chr5             181286215 90 - 181907262 GGG-GCATGGCACTGGGTGAGGCGAGAGGTGCCCCAAGCATGTGGCCTAGA-AGGTTTGTCCAAAACAAATTCTCTCCTGGACCCTGGAGGG--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183007965 90 - 183735486 GGG-GCATGGCACTGGGTGAGGTCAGAGGTGCCCCAAGCATGTGGCCTAGA-AGGTTTGTCCAAAACAAATTCTCTCCTGGACCCTGGAGGG--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       98189 90 +    698298 GGG-GCATGGCACTGGGTGAGGTCAGAGGTGCCCCAAGCATGTGGCCTAGA-AGGTTTGTCCAAAACAAATTCTCTCCTGGACCCTGGAGGG--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522581 90 - 121039945 GGG-GCATGGCACTGGGTGAGGTCAGAGGTGCCCCAAGCATGTGGCCTACA-AGGTTTGTCCAAAACAAATTCTCTCCTGGACCCTGGAGGG--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179476310 90 - 180051392 GGG-GTATGGCACTGGGCGAGGTCAGAGGTGCCCCAAGCACGTGGCCTACAGGGGTTTGTCCAGAACAAATTCTCTCCTGGACCCT-GGGGG--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207440 90 - 181584905 GGG-GTATGGCACTGGGCGAGGTCAGAGGTGCCCCAAGCACGTGGCCTACAGGGGTTTGTCCAGAACAAATTCTCTCCTGGACCCT-GGGGG--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202294 90 -   1764207 GGG-GTATGGCACTGGGCGAGGTCAGAGGTGCCCCAAGCACGTGGCCTACAGGGGTTTGTCCAGAACAAATTCTCTCCTGGACCCT-GGGGG--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216819 90 -  16742782 GGG-GTATGGCACTGGGCGAGGTCAGAGGTGCCCCAAGCACGTGGCCTACAGGGGTTTGTCCAGAACAAATTCTCTCCTGGACCCT-GCGGG--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90526191 90 -  91010382 GGG-GTACGGCACTGGGCGAGGTCAGAGGTGCCCCAAGCACGTGGCCTACAGGGGTTTGTCCAGAACAAATTCTCTCCTGGACCCT-GCGGG--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114591 90 -    438239 GGG-GTATGGCACTGGGCGAGGTCAGAGGTGCCCCAAGCACGTGGCCTACAGGGGTTTGTCCAGAACAAATTCTCTCCTGGACCCT-GCGGG--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153259 92 -    514179 GGGCGTATGGCACTGGGCGAGGTCAGAGGTGCCCCAAGCATGTGGCCTACAGGGGTTTGTCCAGAACAAATTCTCTCCTGGACCCTGGGGGG--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802262 90 + 204313951 GGG-GCACAGCACTAGGTGAGGTCAGAGGTGTCCCAGGCATGTGGCCTGCAGGGATTTGTCCAAAACAAATTCTATCCTGGACCCT-GAAGG--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15963530 90 +  16417988 GGG-ACACAGCACTAGGTGAGGGCAGAGGTGTCCCAGGCATGTGGCCTGCAGGGGTTTGTCCAAAACAAATTCTATCCTGGACCCT-GAAGG--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       41717 91 +    298490 GGG-GCACAGCACTAGGTGAGGTCAGAGGTGTCCCAGGCATGTGGCCTGCAGGGGTTTGTCCAAAACAAATTCTATCCTGGACCCT-GAAGGG-
i cebCap1.NW_016108158v1   I 5 I 1211
s aotNan1.NW_018503740v1    25366149 91 -  25620257 GGG-GCACAGCATTAGGTGACGTGAGAGGTGTCCCAGGCATGTGGCCTGCAGGGGTTTGTCCAAAACCAATTCTGTCCTGGACCCT-GAAGG-G
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=218269.000000
s hg38.chr5_KI270793v1_alt     20364 30 +    126136 GAAGCAGAAGCCG-GCTGCTTCCTATAGTTC
s panTro5.chr5             181286305 30 - 181907262 GAAGCAGACGCCG-GCTGTTTCCTATAGTTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183008055 30 - 183735486 GAAGCAGACGCCG-GCTGTTTCCTATAGTTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       98279 30 +    698298 GAAGCAGAGGCCG-GCTGTTTCCTATAGTTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522671 30 - 121039945 GAAGCAGAGGCCG-GCTGTTTCCTACAGTTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179476400 30 - 180051392 GAGGTAGAGGCCA-GCTGTTTCCTGCAGTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207530 30 - 181584905 GAGGTAGAGGCCA-GCTGTTTCCTGCAGTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202384 30 -   1764207 GAGGTAGAGGCCA-GCTGTTTCCTGCAGTTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216909 30 -  16742782 GAGGTAGAGGCCA-GCTGTTTCCTGCAGTTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90526281 30 -  91010382 GGGGTAGAGGCCA-GCTGTTTCCTGCAGTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114681 30 -    438239 GAGGTAGAGGCCA-GCTGTTTCCTGCAGTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153351 30 -    514179 GAAGTAGAGGCCA-GCTGTTTCTTGCAGTTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802352 31 + 204313951 GAAATAGAGGCCAGGCTGTTTCCTACACTTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15963620 31 +  16417988 GAAATAGAGGCCAGGCTGTTTCCTACACTTT
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25366240 30 -  25620257 -AAATAGAGGCCAGGCTGTTTCCTACCCTTT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e cebCap1.NW_016108158v1       41808 1211 +    298490 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=1052549.000000
s hg38.chr5_KI270793v1_alt     20394 115 +    126136 CCAACACCAGAAAGCCCAGGACTTCTCAGGGAAATCTTGGTTTCCAGCTTTTTCCGAAAGTGCCTGATGGGCAGGCATTCACTCCTTTCAGACAAGCCCCCCAGCCCTTCAGCCA
s panTro5.chr5             181286335 115 - 181907262 CCAACACCAGAAAGCCCAGGACTTCTCTGGGAAATCTTGGTTTCCAGCTTTTTCCAAAAGTGCCTGATGGGCAGGCATTCACCCCTTTCAGACAAGCCCCCCAGCCCTTCAGCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183008085 115 - 183735486 CCAACACCAGAAAGCCCAGGACTTCTCAGGGAAATCTTGGTTTCCAGCTTTTTCCAAAAGTGCCTGATGGGCAGGCATTCACCCCTTTCAGACAAGCCCCCCAGCCCTTCAGCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       98309 115 +    698298 CCAACACCAGAAAGCCCAGGACTTCTCAGGGAAATCTTGGTTTCCAGCTTTTTCCGAAAGTGCCTAATGGGCAGGCATTCACCCCTTTCAGACAAGCCCCCCAGCCCTTTAGCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522701 115 - 121039945 CCAACACCAGAAAGCCCAGGACTTCTCAGGGAAATCTTGTTTTCCAGCTTTTTCCGAAAGTGCCTGATGGGCAGGCATGCACCCCTCTCAGACAAGCCCCCCAGCCCCTCAGCCA
i nomLeu3.chr6             C 0 I 136
s rheMac8.chr6             179476430 115 - 180051392 CCAACACCGGAAAGCCCAGGACTTCTCAGGGAAATCTTGGTTTCCAGCTTTTTCCGAAAGTGCCTGACAGGCGGGCATGCACCCCTCTCAGAAAAGCCCCCCAGCCCCTCAGGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207560 115 - 181584905 CCAACACCGGAAAGCCCAGGACTTCTCAGGGAAATCTTGGTTTCCAGCTTTTTCCGAAAGTGCCTGACAGGCGGGCATGCACCCCTCTCAGAAAAGCCCCCCAGCCCCTCAGGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202414 115 -   1764207 GCAACACTGGAAAGCCCAGGACTTCTCAGGGAAATCTTGGTTTCCAGCTTTTTCCGAAAGTGCCTGACAGGCGGGCATGCACCCCTCTCAGAAAAGCCCCCCAGCCCCTCAGGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      216939 115 -  16742782 CCAACACCGGAAAGCCCAGGACTTCTCAGGGAAATCTTGGTTTCCAGCTTTTTCCGAAAGTGCCTGACAGGCGGGCATGCACCCCTCTCAGAAAAGCCCCCCAGCCCCTCAGGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90526311 115 -  91010382 CCAACACCGGAAAGCCCAGGACTTCTCAGGGAAATCTTGGTTTCCAGCTTTTTCCGAAAGTGCCTGACAGGCGGGCATGCACCCCTCTCAGAAAAGCCCCCTAGCCCCTCAGGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114711 114 -    438239 CCAACACCGGAAAGCCCAGGACTTCTCAGGGAAATCTTGGTTTCCAGCTTTTTCCGAAAGTGCCTGACAGGCGGGCATGCACCCCTCTCAGAAAAGCCCCC-AGCCCCTCAGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153381 115 -    514179 CCAACACCGGAAAGCCCAGGACTTCTCAGGGAAATCTTGGTTTCCAGCTTTTTCCGAAAGTGCCTGACAGGCGGGCATGCACCCCTCTCAGAAAAGCCCCCTAGCCCCTCAGGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802383 112 + 204313951 CCAACATGGGAAAGCACAGGACTTCTCAGGG-AATCCTGGTTTCCAGC-TTTTCTGAGAGCACCTGATGGGCGGGCATGCACCCCTCTCAGGTGAGCCCCC-AGCCCCTCAGGCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15963651 112 +  16417988 ACAATACTGGAAAGCACAGGATTCCAAAGGG-AATCTTGGTTTCCAGC-TTTTCTGAAAGCACCTGACAGGCGGGCATTCACCCCTCTCAGGCGAGCCCCC-AGCCCCTCAGGCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       43019 112 +    298490 CCAACACTGGAAGGCACAGGACTTCTCAGGG-AATCTTGGTTTCCAGC-TTTTCCGAAAGCACCAGACGGGCGGGCATGCACCCCTCTCAGGTGAGCCCCC-AGCCCCTCAGGCG
i cebCap1.NW_016108158v1   I 1211 C 0
s aotNan1.NW_018503740v1    25366270 111 -  25620257 CCAACACCGGAAAGCACA-GACGTCTCAGGG-AATCTTGGCTTCCAGC-TTTTCCGAAAGCACCTGACGGGCGGGCATGCACCCCTCTCAGGCGAGCCCCC-GGCCCCTCAGGCG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=3289470.000000
s hg38.chr5_KI270793v1_alt     20509 358 +    126136 CTGAGCCGTGACCCTCTCCCCAGGAAGGACTGGTGGGGCTGGGGCACTGCCACCACCTGGAGCCCCATCTTCAGCCGCCTGGCAGGAGCTGCACCTG-CACATGGCACCCGTGAACTCCGGCATCTTCCTCTGTCCTCCCAGGCACTCGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACTCgatatggtttagatgtttgt-ccccacagatctcatgttgaaatgtaatcaccagtgctggaggtgggggctggtaggaggtgtttggatcacaggagtgggtccttcctgaatggcgtgggtcatcctgttggtgataagtgagttctcactctggtagatctggtagtttaaaa
s panTro5.chr5             181286450 358 - 181907262 CTGAGCCGTGACCCTCTCCCCAGGAAGGACTGGTGGGGCCGGGGCACTGCCACCACCTGGAGCCCCATCTTCAGCCGCCTGGCAGGAGCTGTGCCTG-CACATGGCACCCGTGAACTCCGGCATCTTCCTCTGTCCTCCCAGGCACTCGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACTCgatatggtttagatgtttgt-ccccacagatctcatgttgaaatgtaatcaccagtgctggaggtgggggctggtaggaggtgtttggatcacaggagtgggtccttcctgaatggcgtgggtcatcccgttggtgatgagtgagttctcactctggtagatctggtagtttaaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183008200 358 - 183735486 CTGAGCCGTGACCCTCTCCCCAGGAAGGACTGGTGGGGCCGGGGCACTGCCACCACCTGGAGCCCCATCTTCAGCCTCCTGGCAGGAGCTGTGCCTG-CACATGGCACCCGTGAACTCCGGCATCTTCCTCTGTCCTCCCAGGCACTCGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACTCgatatggtttagatgtttgt-ccccacagatctcatgttgaaatgtaatcaccagtgctggaggtgggggctggtaggaggtgtttggatcacaggagtgggtccttcctgaatggcgtgggtcatcccgttggtgatgagtgagttctcactctggtagatctggtagtttaaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       98424 359 +    698298 CTGAGCCGTGACCCTCTCCCCAGGAAGGACTGGTGGGGCTGGGGCACTGCCACCACCTGGAACCCCATCTTCAGCCGCCTGGTAGGGGCTGTGCCTGCCACATGGCACCCGTGAACTCCGGCATCTTCCTCTGTCCTCCCAGGCACTCGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACTCgatatgctttagatgtttgt-tcccacagatctcatgttgaaatgtaatcaccagtgctggaggtgggggctggtaggaggtgtttggatcacaggagtgggtccgtcctgaatggcgtgggtcatcccattggtgatgagtgagttctcactctggtagatctggtagtttaaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120522952 358 - 121039945 CTGAGCCGTGACCCTCTCCCCAGGAAGGACTGGTGGGGCTGGGGCACTGCCACCACCTGGAGCTGCATCTTCAGCCGCCTGGCAGGAGCTGCGCCTG-CACATGGCACCCGTGAACGCCGGCGTCTTCCTCTCTCCTCCCAGGCACTTGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACTCgatatggtttagatgtttgt-ccccacaaatctcatgttgaaatgtaatcaccagtgctggaggggggggctggtaggaagtgtttggatcacaggagtgggtccttcatgaatggcgtgggtcatcctgttggtgatgagtgagttctcactctggtagatctggtagtttaaaa
i nomLeu3.chr6             I 136 C 0
s rheMac8.chr6             179476545 357 - 180051392 CTGAGCCGTGACCCTCTACCCAGGAAGGAGGGGTGGGGCCGAGGCACTGCCACCACCTGGAGCCGCGTCTTCAGCCACCTGGCAGGAGCTGCGCCTG-CACGTGGCACCCGTGAACTCCAGCATCTTTCTCTGACCTCCCAGGCACTTGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACGCgatatggtttggatgtttgt-ccccgcaaatctcatgttgaaatggaattgtcagtgctggaggtgggggctgg-aggaggtgtttggattacaggagtgggtgcctcatgaatggcatgggtcatcccgttggtgacgagtgagttctcactctggtagttctggtagtttaaaa
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181207675 357 - 181584905 CTGAGCCGTGACCCTCTCCCCAGGAAGGAGGGGTGGGGCTGAGGCACTGCCACCACCTGGAGCCGCGTCTTCAGCCACCTGGCAGGAGCTGCGCCTG-CACGTGGCACCCGTGAACTCCAGCATCTTTCTCTGACCTCCCAGGCACTTGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACGCAatatggtttggatgtttgt-ccccgcaaatctcatgttgaaatggaattgtcagtgctggaggtgggggctgg-aggaggtgtttggattacaggagtgggtgcctcatgaatggcatgggtcatcccgttggtgacgagtgagttctcactctggtagttctggtagtttaaaa
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202529 357 -   1764207 CTGAGCCGTGACCCTCTCCCCAGGAAGGAGGGGTGGGGCCGAGGCACTGCCACCACCTGGAGCCGCGTCTTCAGCCACCTGGCAGGAGCTGCGCCTG-CACGTGGCACCCATGAACTCCAGCATCTTTCTCTGACCTCCCAGGCACTTGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACGtgatatggtttggatgtttgt-ccccgcaaatctcatgttgaaatggaattgtcagtgctggaggtgggggctgg-aggaggtgtttggattacaggagtgggtgcctcatgaatggcatgggtcatcccgttggtgacgagtgagttctcactctggtagttctggtagtttaaaa
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      217054 357 -  16742782 CTGAGCCGTGACCCTCTCCCCAGGAAGGAGGGGTGGGGCCGAGGCACTGCCACCACCTGGAGCCGCGTCTTCAGCCACCTGGCAGGAGTTGCGCCTG-CACGTGGCACCCGTGAACTCCAGCATCTTTCTCTGACCTCCCAGGCACTTGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACGCgatatggtttggatgtttgt-ccccgcaaatctcatgttgaaatggaattgtcagtgctggaggtgggggctgg-aggaggtgtttggattacaggagtgggtgcctcatgaatggcatgggtcatcccgttggtgacgagtgagttctcactctggtagatctggtagtttaaaa
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90526426 357 -  91010382 CTGAGCCGTGACCCTCTCCCCAGGAAGGATGGGTGGGGCCGAGGCACTGCCACCACCTGGAGCCGCATCTTCAGCCACCTGGCAGGAGCTGCGCCTG-CACGTGGCACCCGTGAACTTCAGCATCTTCCTCTGACCTCCCAGGCACTTGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACCCgatatggtttggatgtttgt-ccccgcaaatctcatgttgaaatgtaattgtcagtgctggaggtgggggctgg-aggaggtgtttggattacaggagtgggtccctcatgaatgacatgggtcatcctgttggtgatgagtgagttctcaccctggtagatctggtagtttaaaa
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      114825 357 -    438239 CTGAGCCGTGACCCTCTCCCCAGGAAGGAGGGGTGGGGCCGAGGCACTGCCACCACCTGGAGCCGCGTCTTCAGCCACCTGGCAGGAGCTGCGCCTG-CACGTGGCACCCGTGAACTCCAGCATCTTTCTCTGACCTCCCAGGCACTTGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACGCgatatggtttggatgtttgt-ccctgcaaatctcatgttgaaatggaattgtcagtgctggaggtgggggctgg-aggaggtgtttggattacaggagtgggtgcctcatgaatggcatgggtcatcccgttggtgacgagtgagttctcactctggtagatctggtagtttaaaa
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153496 358 -    514179 CTGAGCCGTGACCCTCTCCCCAGGAAGGATGGGTGGGGCCGAGGCACTGCTACCACCTGGAGCCACGTCTTCAGCCACCTGGCAGGAGCTGCGCCTG-CACATGGCACCCGTGAACTCCAGCATCTTCCTCTGACCTCCCAGGCACTTGGCATCTTCCAGGGCTGCTGCCTCCTGAGCCCACCCgatatggtttggatgtttgt-cccctcaaatctcatgttgaaatgtaattgtcagtgctggaggtgggggctggtaggaggtgtttggattacaggagtgggtccctcatgaatgacatgggtcgtaccgttggtgatgagtgagttctcactctggtagatctggtagtttaaaa
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802495 337 + 204313951 CTGAGCCGCGACCTTCTCCCAAGCAAGGAC----AGGGCCAGGATACTGCCACCACCTGGAGCTGTGTCTTCAGCCGAC-AGCAGAAGCTGCGCCTG-TATGTGGCTCCCATCAACTCCGGCGTCTTCCTCTGTCCTCCAGGGCACTTAGCATCTTCTGGGGCTGCCGCCTCCTGGGCCTGCCCgatattgttcagacgtttgtcccccacaaatctcatattgaagtgtaaccgccag-----------------tgtgggaggtgtctggatcacaggggtgggtccctcgtgaatggcgtgggccatccccttggagatgagtgagttctcactctggcagatctgctcgtctaaga
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15963763 353 +  16417988 TGGAGCCATGACCTTCTCCCCAGCAAGGAC----AGGGCCAGGATACTGCCGCCACCGGGAGCCATGTCTTCAGCCAAC-AGTGGGAGCTGTGCCTG-CACGGGGCGCCTGTCAACCCCGGCATCTTCCTCTGTCCTCCCAGGCACTTAGCATCGTCCGGGCCTGCTGCCTCCTGGGCCTGCCCgatattgttcggacatttgt-ccccacaaatctcatatcgaaatggagtcgccagagtgggaggtggggcctggtgggaggtgtctggatcacaggggtgggtccctcatgaatggtgtgggccatccccttggtgaggagtgagttctcgctctggtagatctggtcgtttaaga
i saiBol1.JH378155         C 0 I 507
s cebCap1.NW_016108158v1       43131 347 +    298490 CCGAGCCATGACCTTCTCC----CAAGGAC----AGGGCCAGGATACTGCCACCACCGGGAGCCGTGTCTTCAGCCGAC-AGCAGGAGCTGCACCTG-CACTTGGCACCTATGAACTCTGGCATCTTCCTTTGTCCTCCCAGGCACTTAACATCTTCCGGGGCTGCTGCCT-CTGGGCCTGTCCgatattgttcggacgtttgt-ccccacaaatctcatactgaaatgtaattgccagtgtgggaggtggggcctggtcggaggtgtctggatcacaggggtggatccctcatgaatggcgtgggccatcccctt-gtgatgagtgagttctcaatctggtagatctggttgtttaaga
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25366381 353 -  25620257 CTGAGCCGTGACCTTCTCCCCAGCAAGGAC----AGGGCCAGGATACTGCCACCACCGGGAGCCGTGTCTTCAGCCGGC-AGCGGGAGCTGCGCCTG-CACGTGGCGCCCGTCAACTCCGGCATCTTCCTCTGTCCTCCCAGGCACTTAGCGTCTTCCGGGGCTGCCGCCTTCTGGGCCTGCCCgatattgttcggacgtttgt-ccccacaaatctcatattgaaatgtaatcgccagtgtgggagatggtgcctggtgggaggtgtctggatcacaggagtgggtccctcatgaatggtgtgggccatccccctggtgatgagtgagttctcactctggtagatctggtcgtttaaga
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=509220.000000
s hg38.chr5_KI270793v1_alt     20867 61 +    126136 gtgtgtggtggctgggcgcagtggctcacacctgtaatcccagcactttgggtgactgagg
s panTro5.chr5             181286808 61 - 181907262 gtgtgtggTggctgggtgcagtggctcacacctgtaatcccagcactttgggtgactgagg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183008558 61 - 183735486 gtgtgtggTggctgggcgcagtggctcacacctgtaatcccagcactttgggtgactgagg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       98783 61 +    698298 gtgtgcggtggctgggcacagtggctcacacctgtgatcccagcactttgggtgactgagg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523310 61 - 121039945 gtgtgtggtggctgggcgcagtggctcacacctataatcccagcactttgggcaactgagg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179476902 61 - 180051392 gtgtgtggtggccgggtgcagtggctcacacctgtaatcccagcactttgggcgactgaga
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208032 61 - 181584905 gtgtgtggtggccgggtgcagtggctcacacctgtaatcccagcactttgggcgactgaga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202886 61 -   1764207 gtgtgtggtggccgggtgcagtggctcacacctgtaatcccagcactttgggcgactgaga
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      217411 61 -  16742782 gtgtgtggtggccgggtgcagtggctcacacctgtaatcccagcactttgggcgactgaga
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90526783 61 -  91010382 gtgtgtggtggccgggcgcagtggctcacacctgtactcccagcactttgggcgactgaga
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115182 61 -    438239 gtgtgtggtggccgggtgcagtggctcacacctgtaatcccagcactttgggcaactgaga
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153854 61 -    514179 atgtgtagtggccaggcgcagtggctcacacttgtcatcccagcactttgggcgactgaga
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802832 60 + 204313951 ctgtgtggtggcc-ggcacagtagttcacacctgtaatcccagcactttgggaggccgagg
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43478 58 +    298490 -tgtgtggtggct--gcgcagtagttcacacctgtaatcccagaactttgggcgacggagg
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25366734 60 -  25620257 ctgtgtggTggcc-ggcgcagtagttcacaactgtaatcccagaactttgagtgactgagg
i aotNan1.NW_018503740v1   C 0 I 1260
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=1676875.000000
s hg38.chr5_KI270793v1_alt     20928 221 +    126136 agggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaataattagctgggtgtggtggtgcgcacctgttatcccagctgcttgggaggctgaggcaggagaattgcttgaacctgggagacagaggttgcagtgagctgagattacgccactgcactccagcctgggcgacagagtg
s panTro5.chr5             181286869 221 - 181907262 agggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaataattagctgggtgtggtggtgtgcacctgttatcccagctgcttgggaggctgaggcaggagaattgcttgaacctgggagacagaggttgcagtgagctgagattacgccactgcactccagcctgggcgacagagtg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183008619 221 - 183735486 agggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaataattagctgggtgtggtggtgtgcacctgttatcccagctgcttgggaggctgaggcaggagaattgcttgaacctgggagacagaggttgcagtgagctgagattacgccactgcactccagcctgggcgacagagtg
i panPan2.chr5             C 0 M 422
s gorGor5.CYUI01015805v1       98844 221 +    698298 agggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaacacaaaaataattagctgggtgtggtggtgtgcacctgttatcccagctgcttgggaggctgaggcaggagaattgcttgaacctgggagacagaggttgcagtgagctgagattacgccactgcactccagcctgggcgacagagtg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523371 221 - 121039945 caggtggatcacttgaggtcaggagttcaagaccaccctggccaacatggtgaaaccctgtctctactgaaaacacaaaaataattagccgggtgtggtggtatgcacctgttatcccagctacttgggaggctgcggcaggagaattgcttgaacctgggagacagaggttgcagtgagctgagattacaccactgcactccagcctgggcgacagagtg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179476963 221 - 180051392 cgagtggatcatttgaggtcaggagttcaagaccagcctggccaacatggcaaaaccctgtcttgactaaaaacacaaaaataattagctgggtgtggtggtgtgcacctgttatcccagctacttgggggactgaggcaggagaattgctggaacctgggagacagaggttgcagtgagctgagatcatgccactgcactccagcctgggcaacagagtg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208093 221 - 181584905 cgagtggatcatttgaggtcaggagttcaagaccagcctggccaacatggcaaaaccctgtcttgactaaaaacacaaaaataattagctgggtgtggtggtgtgcacctgttatcccagctacttgggggactgagacaggagaattgctggaacctgggagacagaggttgcagtgagctgagatcatgccactgcactccagcctgggcaacagagtg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      202947 220 -   1764207 cgagtggatcatttgaggtcaggagttcaagaccagcctggccaacatggcaaaaccctgtcttgactaaaaacacaaaaataattagctgggtgtggtggtgtgcacctgttatcccagctacttgggggactgaggcaggagaattg-tggaacctgggagacagaggttgcagtgagctgagatcatgccactgcactccagcctgggcaacagagtg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      217472 221 -  16742782 cgagtggatcatttgaggtcaggagttcaagaccagcctggccaacatggcaaaaccctgtcttgactaaaaacacaaaaataattagctgggtgtggtggtgtgcacctgttatcccagctacttgggggactgaggcaggagaattgctggaacctgggagacagaggttgcagtgagctgagatcatgccactgcattccagcctgggcaacagagtg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90526844 221 -  91010382 cgagtggatcacttgaggtcaggagttcaagaccagcctggccaacatggcaaaaccctgtctcgactaaaaacacaaaaataattagctgggtgtggtggtatgcacctgttatcccagctacttggggggctgaggcaggagaattgctggaacctgggagacagaggttgcagtgagctgagatcatgccactgcactccagcctgggcaacagagtg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115243 221 -    438239 cgagtggatcatttgaggtcaggagttcaagaccagcctggccaacatggcaaaaccctgtcttgactaaaaacacaaaaataattagctgggtgtggtggtgtgcacctgttatcccagctacttgggggactgaggcaggagaattgctggaacctgggagacagaggttgcagtgagctgagatcatgccactgcattccagcctgggcaacagagtg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      153915 221 -    514179 cgagtggatcacttgaggtcaggagttcaagaccagcctggccaacatggcaaaaccctgtctcgactaaaaacacaaaaataattagctgggtgtggtggtgtgcacctgttatcccagctacccggggggctgaggcaggagaattgctggaacctgggagacagaggttgcagtgagctgagatcatgccactgcactccagcctgggcaacagagtg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203802892 215 + 204313951 tgggtggattac--aaggtcaagagatcgagaccatcccggtcaacatggtgaaatcccgtcgctactaaaaatacaaa---aattagccaggcatggtggcacatgcctgtaatcccagctactcaggaggctgaggca-gggagttgctggaacccaggaggcggaggttgcagtgagctgaaatcatgccactgcactccagcctgggtgacagagca
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43536 221 +    298490 tgggtggatcacttgaggtcaggagtttgagaccagcctagccaacatgacgaaaccccatctctactaaaaatacaaaaataattagctgggtatggtggcatgtgcctgttatcccagccactcaggaggctgaggcaggggaattgcttgaacccaggaggcagaggttgtagtgagctgaaatcatgccactgcactccagcccgggtgacagagca
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=85042.000000
s hg38.chr5_KI270793v1_alt     21149 14 +    126136 agactccatctcaa
s panTro5.chr5             181287090 14 - 181907262 agactccatcacaa
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99065 14 +    698298 agactccatctcaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523592 14 - 121039945 agactccgtctcaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179477184 14 - 180051392 acactccatctcaa
i rheMac8.chr6             C 0 I 27
s macFas5.chr6             181208314 14 - 181584905 acactccatctcaa
i macFas5.chr6             C 0 I 8
s macNem1.NW_012012389v1      203167 14 -   1764207 acactccatctcaa
i macNem1.NW_012012389v1   C 0 I 8
s cerAty1.NW_012009470v1      217693 14 -  16742782 acactccatctcaa
i cerAty1.NW_012009470v1   C 0 I 27
s chlSab2.chr4              90527065 14 -  91010382 acactccatctcaa
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115464 14 -    438239 acactccatctcaa
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154136 14 -    514179 acactccatctcaa
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203803107 14 + 204313951 agactctgtctcaa
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43757 14 +    298490 agactctgtctcaa
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=1164.000000
s hg38.chr5_KI270793v1_alt     21163  2 +    126136 -----------tt
s panTro5.chr5             181287104  2 - 181907262 -----------tt
i panTro5.chr5             C 0 I 2
s gorGor5.CYUI01015805v1       99079  2 +    698298 -----------tt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523606  2 - 121039945 -----------tt
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181208336  2 - 181584905 -----------tt
i macFas5.chr6             I 8 C 0
s macNem1.NW_012012389v1      203189  2 -   1764207 -----------tt
i macNem1.NW_012012389v1   I 8 C 0
s chlSab2.chr4              90527079  2 -  91010382 -----------TT
i chlSab2.chr4             C 0 I 45
s manLeu1.NW_012110441v1      115478  2 -    438239 -----------tt
i manLeu1.NW_012110441v1   C 0 I 8
s colAng1.NW_012118799v1      154150  2 -    514179 -----------tt
i colAng1.NW_012118799v1   C 0 I 21
s calJac3.chr2             203803121 11 + 204313951 c--tttatttttt
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43771 13 +    298490 cattttttttttt
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e rheMac8.chr6             179477198 27 - 180051392 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=29633.000000
s hg38.chr5_KI270793v1_alt     21165 20 +    126136 aaaaaaaaaaaaagtgtgag
s panTro5.chr5             181287108 20 - 181907262 aaaaaaaaaaaaaGTGTGAG
i panTro5.chr5             I 2 C 0
s gorGor5.CYUI01015805v1       99081 19 +    698298 -aaaaaaaacaaagtgtgag
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523608 18 - 121039945 --aaaaaaaaaaagtgtgag
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181208338 13 - 181584905 -------aaaaaagtgtgag
i macFas5.chr6             C 0 I 48
s macNem1.NW_012012389v1      203191 13 -   1764207 -------aaaaaagtgtgag
i macNem1.NW_012012389v1   C 0 I 7
s manLeu1.NW_012110441v1      115488 13 -    438239 -------aaaaaagtgtgag
i manLeu1.NW_012110441v1   I 8 I 7
s calJac3.chr2             203803132 10 + 204313951 ----------aaagtgtgag
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43784 10 +    298490 ----------aaagtgtgag
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e chlSab2.chr4              90527081 45 -  91010382 I
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e rheMac8.chr6             179477198 27 - 180051392 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=13483.000000
s hg38.chr5_KI270793v1_alt     21185 5 +    126136 gcgcc
s panTro5.chr5             181287128 5 - 181907262 GCGCC
i panTro5.chr5             C 0 I 1362
s gorGor5.CYUI01015805v1       99100 5 +    698298 gcgcc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523626 5 - 121039945 gcacc
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181208399 5 - 181584905 gcacc
i macFas5.chr6             I 48 C 0
s macNem1.NW_012012389v1      203211 5 -   1764207 gtgcc
i macNem1.NW_012012389v1   I 7 C 0
s manLeu1.NW_012110441v1      115508 5 -    438239 gtgcc
i manLeu1.NW_012110441v1   I 7 C 0
s calJac3.chr2             203803142 5 + 204313951 gtgcc
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43794 5 +    298490 gtgcc
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e chlSab2.chr4              90527081 45 -  91010382 I
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e rheMac8.chr6             179477198 27 - 180051392 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=34227.000000
s hg38.chr5_KI270793v1_alt     21190 15 +    126136 tcccccttctgactt
s gorGor5.CYUI01015805v1       99105 15 +    698298 tcccccttctgactt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523631 15 - 121039945 tcccccctctgactt
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181208404 15 - 181584905 tcccctctctGACTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203216 15 -   1764207 tcccccctctgactt
i macNem1.NW_012012389v1   C 0 C 0
s manLeu1.NW_012110441v1      115513 15 -    438239 tcccccctctgactt
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203803147 15 + 204313951 tcctttctctgactt
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43799 15 +    298490 tcccccttccgactt
i cebCap1.NW_016108158v1   C 0 C 0
e panTro5.chr5             181287133 1362 - 181907262 I
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e chlSab2.chr4              90527081 45 -  91010382 I
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e rheMac8.chr6             179477198 27 - 180051392 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=4200.000000
s hg38.chr5_KI270793v1_alt     21205 2 +    126136 gc
s gorGor5.CYUI01015805v1       99120 2 +    698298 gc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523646 2 - 121039945 gc
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181208419 2 - 181584905 GC
i macFas5.chr6             C 0 C 0
s manLeu1.NW_012110441v1      115528 2 -    438239 gc
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203803162 2 + 204313951 gc
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43814 2 +    298490 gc
i cebCap1.NW_016108158v1   C 0 C 0
e panTro5.chr5             181287133 1362 - 181907262 I
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e chlSab2.chr4              90527081 45 -  91010382 I
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e macNem1.NW_012012389v1      203231 0 -   1764207 C
e rheMac8.chr6             179477198 27 - 180051392 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=8115.000000
s hg38.chr5_KI270793v1_alt     21207 5 +    126136 ccccc
s panTro5.chr5             181288495 5 - 181907262 CCCCC
i panTro5.chr5             I 1362 C 0
s gorGor5.CYUI01015805v1       99122 5 +    698298 ccctc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523648 5 - 121039945 ccccc
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181208421 5 - 181584905 TCCCC
i macFas5.chr6             C 0 T 48
s manLeu1.NW_012110441v1      115530 5 -    438239 tcccc
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203803164 5 + 204313951 tcccc
i calJac3.chr2             C 0 I 871
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e cebCap1.NW_016108158v1       43816 0 +    298490 C
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e chlSab2.chr4              90527081 45 -  91010382 I
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e macNem1.NW_012012389v1      203231 0 -   1764207 C
e rheMac8.chr6             179477198 27 - 180051392 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=5140.000000
s hg38.chr5_KI270793v1_alt     21212 7 +    126136 tctcaca
s panTro5.chr5             181288500 7 - 181907262 TCTCACA
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99127 7 +    698298 tctcaca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523653 7 - 121039945 tctcaca
i nomLeu3.chr6             C 0 C 0
s manLeu1.NW_012110441v1      115535 7 -    438239 ccttgca
i manLeu1.NW_012110441v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e cebCap1.NW_016108158v1       43816 0 +    298490 C
e saiBol1.JH378155          15964116 507 +  16417988 I
e calJac3.chr2             203803169 871 + 204313951 I
e canFam3.chr34             11688116 1077 +  42124431 I
e chlSab2.chr4              90527081 45 -  91010382 I
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e macNem1.NW_012012389v1      203231 0 -   1764207 C
e macFas5.chr6             181208426 48 - 181584905 T
e rheMac8.chr6             179477198 27 - 180051392 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=4581.000000
s hg38.chr5_KI270793v1_alt     21219 3 +    126136 gcc
s panTro5.chr5             181288507 3 - 181907262 GCC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99134 3 +    698298 gcc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523660 3 - 121039945 gcc
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181208378 3 - 181584905 gct
i macFas5.chr6             T 48 C 0
s macNem1.NW_012012389v1      203231 3 -   1764207 gct
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90527126 3 -  91010382 GCT
i chlSab2.chr4             I 45 C 0
s cebCap1.NW_016108158v1       43816 2 +    298490 -tc
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e calJac3.chr2             203803169 871 + 204313951 I
e canFam3.chr34             11688116 1077 +  42124431 I
e manLeu1.NW_012110441v1      115542 0 -    438239 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e rheMac8.chr6             179477198 27 - 180051392 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=7200.000000
s hg38.chr5_KI270793v1_alt     21222 2 +    126136 cc
s panTro5.chr5             181288510 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99137 2 +    698298 cc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523663 2 - 121039945 cc
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181208381 2 - 181584905 cc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203234 2 -   1764207 cc
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90527129 2 -  91010382 CC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203804040 2 + 204313951 CC
i calJac3.chr2             I 871 C 0
s cebCap1.NW_016108158v1       43818 2 +    298490 cc
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e manLeu1.NW_012110441v1      115542 0 -    438239 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e rheMac8.chr6             179477198 27 - 180051392 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=25294.000000
s hg38.chr5_KI270793v1_alt     21224 13 +    126136 cctctcacaatgt
s panTro5.chr5             181288512 13 - 181907262 CCTCTCACAATGT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99139 12 +    698298 cc-ctcacaatgt
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181208383 13 - 181584905 ccccttgcaatgt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203236 13 -   1764207 ccccttgcaatgt
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90527131 13 -  91010382 CCCCTTGCAATGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115542  4 -    438239 ---------atgt
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804042 13 + 204313951 CCTCTCACAATGT
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43820 13 +    298490 cctctcataatgt
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e rheMac8.chr6             179477198 27 - 180051392 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=43914.000000
s hg38.chr5_KI270793v1_alt     21237 14 +    126136 gaggtgcctccccc-
s panTro5.chr5             181288525 14 - 181907262 GAGGCGCCTCCCCC-
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99151 14 +    698298 gaggcgcctctccc-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477225 14 - 180051392 gaggtgcctccccc-
i rheMac8.chr6             I 27 I 1
s macFas5.chr6             181208396 14 - 181584905 gaggcacctcccct-
i macFas5.chr6             C 0 T 58
s macNem1.NW_012012389v1      203249 14 -   1764207 gaggcacctcccct-
i macNem1.NW_012012389v1   C 0 I 1
s chlSab2.chr4              90527144 14 -  91010382 GAGGCACCTCCCCC-
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      115546 14 -    438239 gaggcacctcccct-
i manLeu1.NW_012110441v1   C 0 I 1
s calJac3.chr2             203804055 15 + 204313951 GAGGCGCCTCCTCCC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43833 15 +    298490 gaggcgcctcctcct
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=18036.000000
s hg38.chr5_KI270793v1_alt     21251 13 +    126136 tctgacttGCC-CC
s panTro5.chr5             181288539 13 - 181907262 TCTGACTTGCC-CC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99165 13 +    698298 tctGACTTGCT-CT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477240 13 - 180051392 tctgacttgct-cc
i rheMac8.chr6             I 1 I 42
s macNem1.NW_012012389v1      203264 13 -   1764207 tctGACTTGCT-CC
i macNem1.NW_012012389v1   I 1 C 0
s chlSab2.chr4              90527159 13 -  91010382 TCTGACTTGCT-CT
i chlSab2.chr4             I 1 C 0
s manLeu1.NW_012110441v1      115561 14 -    438239 tctGACTTGCTCCC
i manLeu1.NW_012110441v1   I 1 C 0
s calJac3.chr2             203804070  7 + 204313951 TCTGACT-------
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43848  7 +    298490 tctGACT-------
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e macFas5.chr6             181208410 58 - 181584905 T
e panPan2.chr5             183008840 422 - 183735486 M

a score=-4357.000000
s hg38.chr5_KI270793v1_alt     21264 14 +    126136 TCTCTCACAGCCCG
s panTro5.chr5             181288552 14 - 181907262 TCTCTCACAGCCCC
i panTro5.chr5             C 0 C 0
s macNem1.NW_012012389v1      203277  1 -   1764207 -----C--------
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90527172  7 -  91010382 CCTCTCA-------
i chlSab2.chr4             C 0 T 56
s manLeu1.NW_012110441v1      115575  7 -    438239 CCTCTCA-------
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804077  2 + 204313951 -----CG-------
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43855  2 +    298490 -----CG-------
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e macFas5.chr6             181208410 58 - 181584905 T
e rheMac8.chr6             179477253 42 - 180051392 I
e gorGor5.CYUI01015805v1       99178  0 +    698298 C
e panPan2.chr5             183008840 422 - 183735486 M

a score=10925.000000
s hg38.chr5_KI270793v1_alt     21278 7 +    126136 CCTCTCA
s panTro5.chr5             181288566 7 - 181907262 CCTCTCA
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99178 7 +    698298 CCTCTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477295 7 - 180051392 CCTCTCa
i rheMac8.chr6             I 42 C 0
s macNem1.NW_012012389v1      203278 7 -   1764207 CCTCTCA
i macNem1.NW_012012389v1   C 0 T 42
s calJac3.chr2             203804079 7 + 204313951 CCCCCTA
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43857 7 +    298490 CCCCCCA
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665 0 - 121039945 C
e manLeu1.NW_012110441v1      115582 0 -    438239 C
e chlSab2.chr4              90527179 56 -  91010382 T
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e macFas5.chr6             181208410 58 - 181584905 T
e panPan2.chr5             183008840 422 - 183735486 M

a score=6986.000000
s hg38.chr5_KI270793v1_alt     21285 3 +    126136 CAA
s panTro5.chr5             181288573 3 - 181907262 CAA
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99185 3 +    698298 CAA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477302 2 - 180051392 -aa
i rheMac8.chr6             C 0 I 1
s macNem1.NW_012012389v1      203243 3 -   1764207 caa
i macNem1.NW_012012389v1   T 42 C 0
s manLeu1.NW_012110441v1      115582 3 -    438239 CAA
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804086 3 + 204313951 CAA
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43864 3 +    298490 CAA
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665 0 - 121039945 C
e chlSab2.chr4              90527179 56 -  91010382 T
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e macFas5.chr6             181208410 58 - 181584905 T
e panPan2.chr5             183008840 422 - 183735486 M

a score=6007.000000
s hg38.chr5_KI270793v1_alt     21288 3 +    126136 TGT
s panTro5.chr5             181288576 3 - 181907262 TGT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99188 3 +    698298 TGT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477305 3 - 180051392 tgt
i rheMac8.chr6             I 1 T 83
s macFas5.chr6             181208352 3 - 181584905 tgc
i macFas5.chr6             T 58 C 0
s macNem1.NW_012012389v1      203246 3 -   1764207 tgt
i macNem1.NW_012012389v1   C 0 T 41
s manLeu1.NW_012110441v1      115585 3 -    438239 TGT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804089 3 + 204313951 GGG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43867 3 +    298490 TGT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665 0 - 121039945 C
e chlSab2.chr4              90527179 56 -  91010382 T
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=34139.000000
s hg38.chr5_KI270793v1_alt     21291 12 +    126136 GAGGCGCCTCCC
s panTro5.chr5             181288579 12 - 181907262 GAAGCGCCTCCC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99191 12 +    698298 GAGGCGCCTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477225 12 - 180051392 gaggtgcctccc
i rheMac8.chr6             T 83 C 0
s macFas5.chr6             181208355 12 - 181584905 gaggtgcctccc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203208 12 -   1764207 gaggtgcctccc
i macNem1.NW_012012389v1   T 41 C 0
s manLeu1.NW_012110441v1      115588 12 -    438239 GAGGCACCTCCC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804092 12 + 204313951 GAGGTGCCTCCC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43870 12 +    298490 GAGGCACCTCTG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C
e chlSab2.chr4              90527179 56 -  91010382 T
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I
e panPan2.chr5             183008840 422 - 183735486 M

a score=10395.000000
s hg38.chr5_KI270793v1_alt     21303 3 +    126136 CCC
s panTro5.chr5             181288591 3 - 181907262 CCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009262 3 - 183735486 CCC
i panPan2.chr5             M 422 C 0
s gorGor5.CYUI01015805v1       99203 3 +    698298 CCC
i gorGor5.CYUI01015805v1   C 0 I 200
s rheMac8.chr6             179477237 3 - 180051392 ccc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208367 3 - 181584905 ccc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203220 3 -   1764207 ccc
i macNem1.NW_012012389v1   C 0 C 0
s manLeu1.NW_012110441v1      115600 3 -    438239 CCC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804104 3 + 204313951 CTC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43882 3 +    298490 CCA
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665 0 - 121039945 C
e chlSab2.chr4              90527179 56 -  91010382 T
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=18750.000000
s hg38.chr5_KI270793v1_alt     21306 5 +    126136 TCTGG
s panTro5.chr5             181288594 5 - 181907262 TCTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009265 5 - 183735486 TCTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99406 5 +    698298 TCTGA
i gorGor5.CYUI01015805v1   I 200 C 0
s rheMac8.chr6             179477240 5 - 180051392 tctga
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208370 5 - 181584905 tctga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203223 5 -   1764207 tctga
i macNem1.NW_012012389v1   C 0 C 0
s manLeu1.NW_012110441v1      115603 5 -    438239 TCTGA
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804107 5 + 204313951 TCTGG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43885 5 +    298490 TCTGG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665 0 - 121039945 C
e chlSab2.chr4              90527179 56 -  91010382 T
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=89728.000000
s hg38.chr5_KI270793v1_alt     21311 24 +    126136 CTTGCTCTCCTCTCACAATGTGAA
s panTro5.chr5             181288599 24 - 181907262 CTTGCTCTCCTCTCACAATGTGAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009270 24 - 183735486 CTTGCTCTCCTCTCACAATGTGAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99411 24 +    698298 CTTGCTCTCCTCTCACAATGTGAG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477245 24 - 180051392 cttgctccccccttgcaatgtgag
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208375 24 - 181584905 gttgctccccccttgcaatgtgag
i macFas5.chr6             C 0 T 41
s macNem1.NW_012012389v1      203228 24 -   1764207 cttgctccccccttgcaatgtgag
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90527123 24 -  91010382 CTTGCTCCCCCCTTGCAATGTGAG
i chlSab2.chr4             T 56 C 0
s manLeu1.NW_012110441v1      115608 24 -    438239 CTTGCTCTCCTCTCAAAATGCGAG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804112 22 + 204313951 CTTGCTCCCCTC--ACAGTGTGAG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43890 22 +    298490 CTTGCCACCCTC--ACAATGTGAG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=6980.000000
s hg38.chr5_KI270793v1_alt     21335 2 +    126136 GC
s panTro5.chr5             181288623 2 - 181907262 GC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009294 2 - 183735486 GT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99435 2 +    698298 GC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477269 2 - 180051392 gc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208358 2 - 181584905 gt
i macFas5.chr6             T 41 C 0
s macNem1.NW_012012389v1      203252 2 -   1764207 gc
i macNem1.NW_012012389v1   C 0 T 41
s chlSab2.chr4              90527147 2 -  91010382 GC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115632 2 -    438239 GT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804134 2 + 204313951 GT
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43912 2 +    298490 GT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665 0 - 121039945 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=34328.000000
s hg38.chr5_KI270793v1_alt     21337 7 +    126136 GCCTCCC
s panTro5.chr5             181288625 7 - 181907262 GCCTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009296 7 - 183735486 GCCTCCT
i panPan2.chr5             C 0 T 41
s gorGor5.CYUI01015805v1       99437 7 +    698298 GCCTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477271 7 - 180051392 acctccc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208360 7 - 181584905 gcctccc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203213 7 -   1764207 gcctccc
i macNem1.NW_012012389v1   T 41 C 0
s chlSab2.chr4              90527149 7 -  91010382 ACCTCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115634 7 -    438239 GCCTCCC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804136 7 + 204313951 GCCTCCC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43914 7 +    298490 GCCTCCC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665 0 - 121039945 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=26283.000000
s hg38.chr5_KI270793v1_alt     21344 6 +    126136 CCCTCT
s panTro5.chr5             181288632 6 - 181907262 CCCTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009262 6 - 183735486 CCCTCT
i panPan2.chr5             T 41 C 0
s gorGor5.CYUI01015805v1       99444 6 +    698298 CCCTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477278 6 - 180051392 ctctct
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208367 6 - 181584905 ccctct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203220 6 -   1764207 ccctct
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90527156 6 -  91010382 CCCTCT
i chlSab2.chr4             C 0 T 41
s manLeu1.NW_012110441v1      115641 6 -    438239 CCCTCT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804143 6 + 204313951 CTCTCT
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43921 6 +    298490 CCACCT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665 0 - 121039945 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=158093.000000
s hg38.chr5_KI270793v1_alt     21350 53 +    126136 GACTTGCT-CTCCT-CTCACAATGT-------------------------GAGGCACCTCCCCCCTCTGGCTTGCTCTCC-
s panTro5.chr5             181288638 53 - 181907262 GACTTGCT-CTCCT-CTCACAATGT-------------------------GAGGCGCCTCCCCCCTCTGGCTTGCTCTCC-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009268 53 - 183735486 GACTTGCT-CTCCT-CTCACAATGT-------------------------GAGGTGCCTCCTCCCTCTGACTTGCTCTCC-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99450 53 +    698298 GACTTGCT-CTCCT-CTCACAATGT-------------------------GAGGCGCCTCCCCCCTCTGACTTGCTCTCC-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477284 54 - 180051392 GACTTGCT-CCCCCTCTCaaaatgt-------------------------gaggcacctcccccctctgacttgctctcc-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208373 53 - 181584905 gagttgct-ccccc-cttgcaatgt-------------------------gaggcacctcccctctctGACTTGCTCCCC-
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      203226 53 -   1764207 gacttgct-ccccc-cttgcaatgt-------------------------gaggcacctcccctctctGACTTGCTCCCC-
i macNem1.NW_012012389v1   C 0 I 42
s chlSab2.chr4              90527121 53 -  91010382 GACTTGCT-CCCCC-CTTGCAATGT-------------------------GAGGCACCTCCCCCCTCTGACTTGCTCTCC-
i chlSab2.chr4             T 41 C 0
s manLeu1.NW_012110441v1      115647 48 -    438239 GACTTGCT-CTCCT-CTCACAATGTNNNNNNNNNNNNNNNNNNNNNNNNN-------------------------------
i manLeu1.NW_012110441v1   C 0 M 85
s calJac3.chr2             203804149 51 + 204313951 TGCTGGCT---CCC-CTCACagtgt-------------------------aaggtgcct-ccccctctgacttgctccccc
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43927 55 +    298490 GACTTGCTTCCCCT-CCCATAATGT-------------------------GAGGTGCCTCCCCCCTCTGACTTGCTTCCCC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=41486.000000
s hg38.chr5_KI270793v1_alt     21403 11 +    126136 TCTCACAATGT
s panTro5.chr5             181288691 11 - 181907262 TCTCACAACGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009321 11 - 183735486 TCTCACAATGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99503 11 +    698298 TCTCACAATGT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477338 11 - 180051392 tctcacaatgt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208427 11 - 181584905 TCTCAAAATGT
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      203321 11 -   1764207 TCTCACAATGT
i macNem1.NW_012012389v1   I 42 C 0
s chlSab2.chr4              90527174 11 -  91010382 TCTCACAATGT
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203804200 11 + 204313951 tctcacaatgt
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43982 11 +    298490 TCCCATAATGT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C
e manLeu1.NW_012110441v1      115695 85 -    438239 M
e cerAty1.NW_012009470v1      217707 27 -  16742782 I
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=58370.000000
s hg38.chr5_KI270793v1_alt     21414 12 +    126136 GAGGCGCCTCCC
s panTro5.chr5             181288702 12 - 181907262 GAGGCGCCTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009332 12 - 183735486 GAGGCGCCTCCC
i panPan2.chr5             C 0 T 80
s gorGor5.CYUI01015805v1       99514 12 +    698298 GAGGCGCCTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477349 12 - 180051392 gaggcacctccc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208438 12 - 181584905 GAGGCACCTCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203332 12 -   1764207 GAGGCACCTCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      217734 12 -  16742782 gaggtgcctccc
i cerAty1.NW_012009470v1   I 27 C 0
s chlSab2.chr4              90527185 12 -  91010382 GAGGCACCTCCC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203804211 12 + 204313951 gaggcgcctcct
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       43993 12 +    298490 GAGGCACCTCCC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C
e manLeu1.NW_012110441v1      115695 85 -    438239 M
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=6975.000000
s hg38.chr5_KI270793v1_alt     21426 2 +    126136 CG
s panTro5.chr5             181288714 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99526 2 +    698298 CC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477361 2 - 180051392 cc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208450 2 - 181584905 CC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203344 2 -   1764207 CC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      217746 2 -  16742782 cc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527197 2 -  91010382 CC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203804223 2 + 204313951 cc
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       44005 2 +    298490 CC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665 0 - 121039945 C
e manLeu1.NW_012110441v1      115695 85 -    438239 M
e colAng1.NW_012118799v1      154152 21 -    514179 I
e panPan2.chr5             183009344 80 - 183735486 T

a score=89573.000000
s hg38.chr5_KI270793v1_alt     21428 16 +    126136 CTCTGGCTTGCTCTCC
s panTro5.chr5             181288716 16 - 181907262 CTCTGGCTTGCTCTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009264 16 - 183735486 CTCTGACTTGCTCTCC
i panPan2.chr5             T 80 C 0
s gorGor5.CYUI01015805v1       99528 16 +    698298 CTCTGACTTGCTCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477363 16 - 180051392 ctctGACTTGCTCTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208452 16 - 181584905 CTCTGACTTGCTCTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203346 16 -   1764207 CTCTGACTTGCTCTCC
i macNem1.NW_012012389v1   C 0 T 82
s cerAty1.NW_012009470v1      217748 16 -  16742782 ctctgacttgctcccc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527199 16 -  91010382 CTCTGACTTGCTCTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115780 16 -    438239 CTCTGACTTGCTCTCC
i manLeu1.NW_012110441v1   M 85 C 0
s calJac3.chr2             203804225 16 + 204313951 ctctGACTTGGCCCCC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       44007 16 +    298490 ATCTGACTTGCTCCCC
i cebCap1.NW_016108158v1   C 0 I 1
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=35729.000000
s hg38.chr5_KI270793v1_alt     21444 8 +    126136 TCTCACAA
s panTro5.chr5             181288732 8 - 181907262 TCTCACAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009280 8 - 183735486 TCTCACAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99544 8 +    698298 TCTCACAA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477379 8 - 180051392 TCTCACAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208468 8 - 181584905 TCTCACAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203280 8 -   1764207 TCTCAAAA
i macNem1.NW_012012389v1   T 82 C 0
s cerAty1.NW_012009470v1      217764 8 -  16742782 ccttgcaa
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527215 8 -  91010382 TCTCACAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115796 8 -    438239 TCTCACAA
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203804241 5 + 204313951 ---GACAA
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       44024 8 +    298490 TCTCATAA
i cebCap1.NW_016108158v1   I 1 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665 0 - 121039945 C
e colAng1.NW_012118799v1      154152 21 -    514179 I

a score=65159.000000
s hg38.chr5_KI270793v1_alt     21452 15 +    126136 TGTGAGGC-----------------------------------------GCCTCCC
s panTro5.chr5             181288740 56 - 181907262 CGTGAGGCGCCTCCCCCCTCTGACTTGCTCTCCTCTCACAATGTGAGGTGCCTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009288 15 - 183735486 TGTGAGGT-----------------------------------------GCCTCCT
i panPan2.chr5             C 0 T 41
s gorGor5.CYUI01015805v1       99552 15 +    698298 TGTGAGGC-----------------------------------------GCCTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477387 15 - 180051392 TGTGAGGC-----------------------------------------ACCTCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208476 15 - 181584905 TGTGAGGC-----------------------------------------ACCTCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203288 15 -   1764207 TGTGAGGC-----------------------------------------ACCTCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      217772 15 -  16742782 tgtgaGGC-----------------------------------------ACCTCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527223 15 -  91010382 TGTGAGGC-----------------------------------------ACCTCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115804 15 -    438239 TGAGAGCT-----------------------------------------GTCTCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154173 14 -    514179 tgtgaggt-----------------------------------------gcctcc-
i colAng1.NW_012118799v1   I 21 C 0
s calJac3.chr2             203804246 15 + 204313951 TGTGAGGC-----------------------------------------TCCTCCC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       44032 15 +    298490 TGTGAGGC-----------------------------------------GCCTCCT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C

a score=131734.000000
s hg38.chr5_KI270793v1_alt     21467 26 +    126136 CCCTCTGGCTTGCT-CTCCTCTCACAA
s panTro5.chr5             181288796 26 - 181907262 CCCTCTGGCTTGCT-CTCCTCTCACAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009262 26 - 183735486 CCCTCTGACTTGCT-CTCCTCTCACAA
i panPan2.chr5             T 41 C 0
s gorGor5.CYUI01015805v1       99567 26 +    698298 CCCTCTGACTTGCT-CTCCTCTCACAA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477402 26 - 180051392 CCCTCTGACTTGCT-CTCCTCTCACAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208491 26 - 181584905 CCCTCTGACTTGCT-CTCCTCTCACAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203303 26 -   1764207 CCCTCTGACTTGCT-CTCCTCTCACAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      217787 27 -  16742782 CTCTCTGACTTGCTCCCCCTCTCAAAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527238 26 -  91010382 CCCTCTGACTTGCT-CTCCTCTCACAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115819 26 -    438239 CCCTCTGACTTGCC-CCCCTCTCACAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154187 26 -    514179 ccctctgatttgct-ccccccttgcaa
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203804261 24 + 204313951 CTCTCTGCCTTGCT-CCCCTCACAG--
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       44047 22 +    298490 CCTTCTGACTCG---CCCCCCACAA--
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25366794 1260 -  25620257 I
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C

a score=115880.000000
s hg38.chr5_KI270793v1_alt     21493 15 +    126136 TGTGAGGCGCCTCCC
s panTro5.chr5             181288822 15 - 181907262 TGTGAGGTGCCTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009288 15 - 183735486 TGTGAGGTGCCTCCT
i panPan2.chr5             C 0 T 41
s gorGor5.CYUI01015805v1       99593 15 +    698298 TGTGAGGCGCCTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477428 15 - 180051392 TGTGAGGCACCTCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208517 15 - 181584905 TGTGAGGCACCTCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203329 15 -   1764207 TGTGAGGCACCTCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      217814 15 -  16742782 TGTGAGGGACCTCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527264 15 -  91010382 Tgtgaggcacctccc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115845 15 -    438239 TGTGAGGCACCTCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154213 15 -    514179 tgtgaGGCACCTCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203804285 15 + 204313951 TGTGAGGTGCCTCCC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       44069 15 +    298490 TGTGAGGCACCTCCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25368054 15 -  25620257 TGTGAGGTGCCTCCT
i aotNan1.NW_018503740v1   I 1260 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C

a score=158092.000000
s hg38.chr5_KI270793v1_alt     21508 26 +    126136 CCCTCTG------------------------------------GCTTGC-TCTC-CTCTCACAA
s panTro5.chr5             181288837 26 - 181907262 CCCTCTG------------------------------------ACTTGC-TCTC-CTCTCACAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009262 26 - 183735486 CCCTCTG------------------------------------ACTTGC-TCTC-CTCTCACAA
i panPan2.chr5             T 41 C 0
s gorGor5.CYUI01015805v1       99608 62 +    698298 CCCTCTGACTTGCTCTCCTCTCCAATGTGAGGCTCCTCCCCCCACTTGC-TCTC-CTCTCACAA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477443 26 - 180051392 CCCTCTG------------------------------------ACTTGC-TCTC-CTCTCACAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208532 26 - 181584905 CCCTCTG------------------------------------ACTTGC-TCTC-CTCTCACAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203344 26 -   1764207 CCCTCTG------------------------------------ACTTGC-TCTC-CTCTCACAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      217829 26 -  16742782 CCCTCTG------------------------------------ACTTGC-TCTC-CTCTCACAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527279 26 -  91010382 ccctctg------------------------------------acttgc-cccc-ctatcacaa
i chlSab2.chr4             C 0 T 82
s manLeu1.NW_012110441v1      115860 27 -    438239 CTCTCTG------------------------------------ACTTGCTCCCC-CTCTCACAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154228 26 -    514179 CCCTCTG------------------------------------ACTTGC-TCTC-CTCTCACAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203804300 24 + 204313951 CTCTCTG------------------------------------GCTTGC-TCCC---CTCACAG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       44084 24 +    298490 CCCTCTG------------------------------------ACTTGC-CCCC---CTCACAA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25368069 27 -  25620257 TCCTCTG------------------------------------ACTTGC-TCCCCCTCTCATAA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C

a score=200078.000000
s hg38.chr5_KI270793v1_alt     21534 28 +    126136 TGTGAGGCGCCTCC-CCCTCTGACTTGCT
s panTro5.chr5             181288863 28 - 181907262 TGTGAGGCGCCTCC-CCCTCTGACTTGCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009288 29 - 183735486 TGTGAGGTGCCTCCTCCCTCTGACTTGCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99670 28 +    698298 TGTGAGGCGCCTCC-CCCCCGGACTTGCT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477469 29 - 180051392 Tgtgaggcacctcccctctctgacttgct
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181208558 29 - 181584905 Tgtgaggcacctcccctctctgacttgct
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      203370 29 -   1764207 TGTGAGGCACCTCCCCTCTCTGACTTGCT
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      217855 29 -  16742782 Tgtgaggcacctcccctctctgacttgct
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90527223 29 -  91010382 TGTGAGGCACCTCCCCCCTCTGACTTGCT
i chlSab2.chr4             T 82 C 0
s manLeu1.NW_012110441v1      115887 29 -    438239 TGTGAGGCACCTCCCCCCTCTGACTTGCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154254 29 -    514179 Tgtgaggcacctcccctctctgacttgct
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203804324 28 + 204313951 TGTAAGGTGCCTCCC-CCTCTGACTTGCT
i calJac3.chr2             C 0 I 1
s cebCap1.NW_016108158v1       44108 29 +    298490 TGTGAGGTGCCTCCCTCCTCTGACTTGCT
i cebCap1.NW_016108158v1   C 0 I 573
s aotNan1.NW_018503740v1    25368096 29 -  25620257 TGTGAGGTGCCTCCTCCCTCTGACTCGCC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C

a score=58735.000000
s hg38.chr5_KI270793v1_alt     21562 10 +    126136 CTCCTCTCAC
s panTro5.chr5             181288891 10 - 181907262 CTCCTCTCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009317 10 - 183735486 CTCCTCTCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99698 10 +    698298 CTCCTCTCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477499 10 - 180051392 cccctctcaa
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181208588 10 - 181584905 cccctctcaa
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      203400 10 -   1764207 CCCCTCTCAA
i macNem1.NW_012012389v1   I 1 C 0
s cerAty1.NW_012009470v1      217885 10 -  16742782 cccctctcaa
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90527252 10 -  91010382 CTCCTCTCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115916 10 -    438239 CTCCTCTCAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154284 10 -    514179 cctctctcaa
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203804353 10 + 204313951 CCCCTCTCAC
i calJac3.chr2             I 1 C 0
s cebCap1.NW_016108158v1       44710 10 +    298490 CTCCTCTCAT
i cebCap1.NW_016108158v1   I 573 C 0
s aotNan1.NW_018503740v1    25368125  7 -  25620257 ---CCCCGAC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e saiBol1.JH378155          15964116 507 +  16417988 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665  0 - 121039945 C

a score=202162.000000
s hg38.chr5_KI270793v1_alt     21572  33 +    126136 AATGTGAGGTGCCTCCTCCCTCT--------------------------------------------------------------------------------------------------------------------------GACTTGCTCT
s panTro5.chr5             181288901 114 - 181907262 AATGTGAGGTGCCTCCTCCCTCTGACTTGCTCTCCT-----------------------------------------CTCACAATGTGAGGTGCCTCCTCCCTCTGACTTGCTCTCCTCTCACAATGTGAGGTGCCTCCCCCCCCGACTTGCTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009327  31 - 183735486 AATGTGAGGCGCCTCCCCCCC----------------------------------------------------------------------------------------------------------------------------GACTTGCTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99708 115 +    698298 AATGTGAGGCGCCTCCCCCCTCTGACTTGCTCTCCTCTCACAATGTGAGGCGCCCTCCCCCCCGGACTTGCTCTCCCCTCACATTGTGAGGCACCTCCCCCCTCT----------------------------------------GACTTGCTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179477509  33 - 180051392 aatgtgaggtgcctcccccctct--------------------------------------------------------------------------------------------------------------------------gacttgctct
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181208598  33 - 181584905 aatgtgaggtgcctcccccctct--------------------------------------------------------------------------------------------------------------------------GACTTGCTCT
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      203410  33 -   1764207 AATGTGAGGTGCCTCCCCCCTCT--------------------------------------------------------------------------------------------------------------------------GACTTGCTCT
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      217895  33 -  16742782 aatgtgaggtgcctcccccctct--------------------------------------------------------------------------------------------------------------------------gacttgctct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527262  33 -  91010382 AATgtgaggcacctcccccctct--------------------------------------------------------------------------------------------------------------------------gacttgcccc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      115926  33 -    438239 AATGTGAGGTGCCTCCCCCCTCT--------------------------------------------------------------------------------------------------------------------------GACTTGCTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154294  33 -    514179 aatgtggggtgcctcccccctct--------------------------------------------------------------------------------------------------------------------------GACTTGCTCT
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203804363  33 + 204313951 AATGTGAGGCGCCTCCTCCCTCT--------------------------------------------------------------------------------------------------------------------------GACTCGCCCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15964623  33 +  16417988 AGTGTGAGATGCCTCCCACCTCT--------------------------------------------------------------------------------------------------------------------------GACTTGCTCC
i saiBol1.JH378155         I 507 C 0
s cebCap1.NW_016108158v1       44720  33 +    298490 AATGTGAGGCGCCTCCTCCCTCT--------------------------------------------------------------------------------------------------------------------------GACTCGCCCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25368132  33 -  25620257 AATGTGAGGCGCCTGCCCCATCT--------------------------------------------------------------------------------------------------------------------------GACTTGCTCC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I
e nomLeu3.chr6             120523665   0 - 121039945 C

a score=98962.000000
s hg38.chr5_KI270793v1_alt     21605 12 +    126136 -CCTCTCACAATg
s panTro5.chr5             181289015 12 - 181907262 -CCTCTCACAATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009358 12 - 183735486 -CCTCTCACAATG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99823 12 +    698298 -CCTCTCACAATG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523665 12 - 121039945 -cctctcacaatg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179477543 12 - 180051392 -ccTCTCACAATG
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181208632 12 - 181584905 -CCTCTCACAATG
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      203444 12 -   1764207 -CCTCTCACAATG
i macNem1.NW_012012389v1   I 1 C 0
s cerAty1.NW_012009470v1      217928 12 -  16742782 -cctctcacaatg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527295 12 -  91010382 -cctatcacaatg
i chlSab2.chr4             C 0 T 82
s manLeu1.NW_012110441v1      115959 12 -    438239 -CCTCTCACAATG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154328 12 -    514179 -CTTCTCACAATG
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203804396  8 + 204313951 C-----TACagtg
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15964656 13 +  16417988 CCTTCTCACAATg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       44753  9 +    298490 CC----CACAATg
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25368165 13 -  25620257 CCCTCTCACAATg
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=273048.000000
s hg38.chr5_KI270793v1_alt     21617 34 +    126136 tgaggtgcctcctccctctgacttgcccc-cctct
s panTro5.chr5             181289027 34 - 181907262 TGAGGTGcctcctccctctgacttgcccc-cctct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009370 34 - 183735486 TGAGGTGcctcctccctctgacttgcccc-cctct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99835 34 +    698298 TGAGGTGcctcctccctctgacttgctct-cctct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523677 34 - 121039945 tgagatgcctcctccctctgacttgcccc-cctct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179477555 34 - 180051392 AGAGCTGtctcctccctctgacttgcccc-cctct
i rheMac8.chr6             C 0 I 2
s macFas5.chr6             181208644 34 - 181584905 AGAGCTGtctcctccctctgacttgcccc-cctct
i macFas5.chr6             C 0 I 2
s macNem1.NW_012012389v1      203456 34 -   1764207 AGAGCTGtctcctccctctgacttgcccc-cctct
i macNem1.NW_012012389v1   C 0 I 2
s cerAty1.NW_012009470v1      217940 34 -  16742782 agagctgtctcctccctctgacttgcccc-cctct
i cerAty1.NW_012009470v1   C 0 I 2
s chlSab2.chr4              90527225 34 -  91010382 TGAGGCACCTCCCCCCTCTGACTTGCTCT-CCTCT
i chlSab2.chr4             T 82 I 46
s manLeu1.NW_012110441v1      115971 34 -    438239 AGAGCTGtctcctccctctgacttgcccc-cctct
i manLeu1.NW_012110441v1   C 0 I 2
s colAng1.NW_012118799v1      154340 35 -    514179 AGAGATGtctcctccctctgacttgctctgcctct
i colAng1.NW_012118799v1   C 0 I 2
s calJac3.chr2             203804404 33 + 204313951 tgaggtgcctcccctctcggccttgctcc-tctc-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15964669 33 +  16417988 tgaggcacctccctcctctggcttgctcc-cctc-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       44762 33 +    298490 tgaggcgcctccctccactgacttgctcc-cctc-
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25368178 33 -  25620257 tgaggcacctccccgctctggcttgctcc-cctc-
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=11328.000000
s hg38.chr5_KI270793v1_alt     21651 5 +    126136 taaag
s panTro5.chr5             181289061 5 - 181907262 tacag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009404 5 - 183735486 tacag
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99869 5 +    698298 cacag
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523711 5 - 121039945 tacaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179477591 3 - 180051392 --caa
i rheMac8.chr6             I 2 C 0
s macFas5.chr6             181208680 3 - 181584905 --caa
i macFas5.chr6             I 2 C 0
s macNem1.NW_012012389v1      203492 3 -   1764207 --caa
i macNem1.NW_012012389v1   I 2 C 0
s cerAty1.NW_012009470v1      217976 3 -  16742782 --caa
i cerAty1.NW_012009470v1   I 2 C 0
s manLeu1.NW_012110441v1      116007 3 -    438239 --caa
i manLeu1.NW_012110441v1   I 2 C 0
s colAng1.NW_012118799v1      154377 3 -    514179 --cag
i colAng1.NW_012118799v1   I 2 C 0
s calJac3.chr2             203804437 4 + 204313951 -acag
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15964702 4 +  16417988 -acag
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       44795 4 +    298490 -acag
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25368211 4 -  25620257 -acag
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I
e chlSab2.chr4              90527259 46 -  91010382 I

a score=2760404.000000
s hg38.chr5_KI270793v1_alt     21656 307 +    126136 tgtcatgtatctgctccccctttaccttccaccacaactggaagcttcctgaggcctcatcagaagcagatcctggcactacacttcatgtacggcctacaaaaccatgagccaattaaccctcttttctttataaattacccagtctcaggttttctttatagcaatgcaagaacagcctagtacaCCACCTCTGCCTCTCTTTCCGCCATCTGCTGTTAAAAGCAGGCTGATCAGGACCAGGGGCCAGCATCAGATATAACCTGGC----ATCCCCTGCAAAGTCCCAGGCTTCCCCCACTATGGCTTG
s panTro5.chr5             181289066 307 - 181907262 tgtcatgcatctgctccccctttaccttccaccacaactggaagcttcctgaggcctcatcagaagcagatcctggcactacacttcatgtacggcctacaaaaccatgagccaattaaccctcttttctttataaattacccagtctcaggttttctttatagcaatgcaagaacagcctactacaCCACCTCTGCCTCTCTTTCCGCCATCTGCTGTTAAAAGCAGGCTGATCAGGACCAGGGGCCAGCATCAGATATAACCTGGC----ATCCCCTGCAAAGTCCCAGGCTTACCCCACTATGGCTTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009409 307 - 183735486 tgtcatgcatctgctccccctttaccttccaccacaactggaagcttcctgaggcctcatcagaagcagatcctggcactacacttcatgtacggcctacaaaaccatgagccaattaaccctcttttctttataaattacccagtctcaggttttctttatagcaatgcaagaacagcctactacaCCACCTCTGCCTCTCTTTCCGCCATCTGCTGTTAAAAGCAGGCTGATCAGGACCAGGGGCCAGCATCAGATATAACCTGGC----ATCCCCTGCAAAGTCCCAGGCTTACCCCACTATGGCTTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1       99874 307 +    698298 tgtcatgcatctgctccccctttaccttccaccacaactggaagcttcctgaggcctcatcagaagcagatcctggcactacacttcatgtacggcctacaaaaccatgagccaattaaccctcttttctttataaattacccagtctcaggttttctttatagcaatgcaagaatggcctagtacaCCACCTCTGCCTCTCTTTCCGCCATCTGCTGTTAAAAACAGGCTGATCAGGACCAGGGGCCAGCATCACATATAACCTGGC----ATCCCCTGCAAAGTCCCAGGCTTACCCCACTATGGCTTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120523716 306 - 121039945 tgccatgcatctgctccccctttaccttccaccacaactggaagcttcctgaggcctcatcagaagcagatcctgccactacacttcatgtacggcctacaaaaccatgagccaattaaacctcttttctttataaattacccagtctcaggttttccttatagcaatgcaagaatggcctagtacaCCACCTCTGCCTCTCTTTCCACCATCTGCTGTTAAAAGCAGGCTGATCAGGATC-GGGGCCAGCATCAGATATAACCTGGC----ATCCCCTGCAAAGTCCCAGGCTTACCCCACTATGGCTTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179477594 302 - 180051392 cgccatgcatctgctccccctttaccttccaccacaattggaaacttcctgaggcctcatcagaagcagatcctggcactatacttcatgtacagcctacaaaaccgtgagccaattaaacctcttttctttataaattcccc--tttcagg-tatccttatagcaatccaaga-cgccctagtacCCCGGCTATGCCTCTCTTTACGCCATATGCTG-TGAACACAGGTTGATCAGGACTAGCGGCCAGCATCAGATATAACCTGGT----GTCATATGCCAAGTCCCAGGCTTACCCCAATATGGCTTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208683 307 - 181584905 cgccatgcatctgctccccctttaccttccaccacaattggaaacttcctgaggcctcatcagaagcagatcctggcactatacttcatgtacagcctacaaaaccgtgagccaattaaacctcttttctttataaattacccagtctcaggttttctttatagcaatgcaagaacggcctagtacaCCGCCTCTGCCTCTCTTTCCGCCATCTGCTGTTAAACACAGGTTGATCAGGACCAGCGGCCAGCATCAGATATAACCTGGC----GTCCTCTGCCAAGTCCCAGGCTTACCCCACTATGGCTTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203495 307 -   1764207 cgccatgcatctgctccccctttaccttccaccacaattggaaacttcctgaggcctcatcagaagcagatcctggcactatacttcatgtacagcctacaaaaccgtgagccaattaaacctcttttctttataaattacccagtctcaggttttctttatagcaatgcaagagcggcctagtacaCCGCGTCTGCCTCTCTTTCCGCCATCTGCTGTTAAACACAGGTTGATCAGGACCAGCGGCCAGCATCAGATATAACCTGGC----GTCCTCTGCCAAGTCCCAGGCTTACCCCACTATGGCTTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      217979 307 -  16742782 cgccatgcatctgctccccctttaccttccaccacaattggaaacttcctgaggcctcatcagaagcagatcctggcactatacttcatgtacagcctacaaaaccgtgagccaattaaacctcttttctttataaattacccagtctcaagttttatttacagcaatgcaagaacggcctagtacaCCGCCTCTGCCTCTCTTTCCGCCATCTGCTGTTAAACACAGGTTGATCAGGACCAGGGGCCAGCATCAGATATAACCTGGC----GTCCTCTGCCAAGTCCCAGGCTTACCCCACTATGGCTTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527305 307 -  91010382 tgccatgcatctgctccccctttaccttccaccacaattggaaacttcctgaggcctcatcagaagcagatcctgacgctatacttcatgtacagcctacaaaaccgtgagccaattaaacctcttttctttataaattacccagtctcaggttttctttatagcaatgcaagaacggcctagtacGCCGCCTCTGCCTCTCTTTCTGCCATCTGCTGTTAAACACAGGTTGATCGGGACCAGGGGCCAGCATCAGATATAATCTGGC----GTCCTCTGCCAAGTCCCAGGCTTACCCCACTATGGCTTG
i chlSab2.chr4             I 46 C 0
s manLeu1.NW_012110441v1      116010 307 -    438239 cgccatgcatctgctccccctttaccttccaccacaattggaaacttcctgaggcctcatcagaagcagatcctggcactatacttcatgtacagcctacaaaaccgtgagccaattaaacctcttttctttataaattactcagtctcaggttttctttatagcaatgcaagaacggcctagtacaCCGCCTCTGCCTCTCTTTCCACCATCTGCTGTTAAACACAGGTTGATCAGGACCAGGGGCCAGCATCAGGTATAACCTGGC----ATCCTCTGCCAAGTCCCAGGCCTACCCCACTATGGCTTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154380 307 -    514179 tgccatgcatcggctccccctttaccttccaccacaattggaaatttcctgaggcctcatcagaagcagatcctggcactatacctcatgtatagcctacaaaacagtgagccaattaaacctcttttctttataaattacccagtcgcaggttttctttttagcaatgcaaggacggcctagtacaCCGCCTCTGCCTCTCTTTTCACCGTCTGCTGTTAAACACAGGTTGATCAGGACCAGGGGCCAGCATCAGATATAACCTGGC----GTCCTCTGCCAAGTCCCAGGCTTACCCCACTATGGCTTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203804441 304 + 204313951 tgccatgcacctgctcctcctttgccttccactgtgattggaagctccctgaggcctcatcagaagcagatcctggccctgcacttcatggatggcctccagaaccatgagc--attaaacctcttttctttataaattatgcagtctcaggtttcctttatagcaac-cgagaaaggactagtacaCCGCC-CTGCCTGTCTTCCCGCCCTCTGCTGTT--ATGAAGACTGATCAGGACCAG-GGCCAGCATCAGGTATCTCCTGGCGGCGGTCCTCTGCCAAGTCCCAGGCTTACCCCACTATGGCCCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15964706 303 +  16417988 tgccacgcacctgctccctctttgccttccactgtgattggaagctccctgaggcctcatcagaagcagatcctggcactgcacttcatggatggtctccaggaccatgagc--attaaactttttttcttt-taaattatccagtctcaggtttcctttatagcacc-caagaaaggactagtataCCGCC-CGGCCTGTCTTCCTGCCATCTGCTGTT--ACGCAAACTGATCAGGACCAG-GGCCAGCATCAGATATCACCTGGCGGCGGTCCTCTGCCAACTCCCAGGCTTACCCCACTGTGGCCAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       44799 304 +    298490 tgccatgcacctgctccccctttgccctccactgtgattggaagctccctgaggcctcatcagaagcagatcctggcactgctcttcatggatgacctccagaaccatgtgc--attaagcctcttttctttataaattatccagtctcgggtttcctttatggcacc-caagaacggaccagtacaCGGCC-CAGCCTGTCTTCCCGCCATCTGCTGTT--AGGCAGACTGATCAGGACCAG-GGCCAGCATCAGGTATCACCTGGCAGCCGTCCTCTGCCAAGTCCCAGGCTTACCCCACAATGGCCCG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25368215 303 -  25620257 tgccacgcacctcctctcgctttgccttccaccatgattggaagctccctgaggcctcatcagaagcagatcctggcactgcacttcatggacgg-ctccagaaccatgagc--attaaacctcttttctttataaattatccagtctcaggtttcctttatagcacc-caagaacggcctaGTGTGCCACG-CAGCCTGTCTTCCCGCCATGTGCTGTT--ACGCAGACAGATCAGGACCAC-GGCCAGCATCAGATATCACCTGGCGGCCGTCCTCTGCCAAGTCCCGGGCTTACCCCACTATGGCCTG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11688116 1077 +  42124431 I

a score=2314259.000000
s hg38.chr5_KI270793v1_alt     21963 239 +    126136 GGG-ACCTGCAGCTGCTTGCTCCTCATCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGAGTCCCTTAGGGCCAGGGCAGAGTGTGGCCTGGGGGCCACCAGCCTCAGGAAGCCCAAGGCC--TCCTCCAAGCAGGAGTTCTCTCAGAGCCAGAGCTGCCCCACCCCATATGGCCCAGTGACCATCACTCAAAGCTCACCTTCTCCTTGAGCCTCTGGTCAGCCGACCAGCCCTGACTGCTccc
s panTro5.chr5             181289373 239 - 181907262 GGG-ACCTGCAGCTGCTTGCTCCTCATCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGAGTCCCTTAGGGCCAGGGCAGAGCGTGGCCTGGGGGCCACCAGCCTCAGGAAGCCCAAGGCC--TCCTCCAAGCAGGAGTTCTCTCAGAACCAGAGCCACCCCACCCCATATGGCCCAGTGACCATCACTCAAAGCTCACCTTCTCCTTGAGCCTCTGGTCAGCCGACCAGCCCTGACTGCTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009716 239 - 183735486 GGG-ACCTGCAGCTGCTTGCTCCTCATCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGAGTCCCTTAGGGCCAGGGCAGAGCGTGGCCTGGGGGCCACCAGCCTCAGGAAGCCCAAGGCC--TCCTCCAAGCAGGAGTTCTCTCAGAGCCAGAGCCGCCCCACCCCATATGGCCCAGTGACCATCACTCAAAGCTCACCTTCTCCTTGAGCCTCTGGTCAGCCGACCAGCCCTGACTGCTCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      100181 239 +    698298 GGG-ACCTGCAGCTGCTTGCTCCTCATCTCTGAGGTTTCGGGGAGCCCAGAGCTCAGAGTCCCTTAGGGCCAGGGCAGAGCGTGGCCTGGGGGCCACCAGCCTCCGGAAGCCCAAGGCC--TCCTCCAAGCAGGAGTTCTCTCAGAGCCAGAGCCGCCCCACCCCATATGGCCCAGTGACCATCACTCAAAGCTCACCTTCTCCTTGAGCCTCTGGTCAGCCGACCAGCCCTGActgctccc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120524022 235 - 121039945 GGG-ACCTGCGGCTGCTTGCTCCTCATCTCTGAGGCTTC-AGGAGCCCAGAGCTCAGAGTCCCTTAGGGCCAGGGCAGAGTGTGGCCTGGGGGCCACCAGCCTCAGGAAGCCCAAGGCC--TCCTCCAAGCAGGAGTTTGCTCAGAGCCAGAGCCGCCCGACCCCATATGGCCCAGTGACCATCACTCAAAACTCACCTTCTCCTTGAGCCTCTGGTCAGCCGACCAGCCCTGActgct---
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179477896 239 - 180051392 GGG-ACCTGCAGCTGCTTGCTCCTCATCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGAGTCCCTTAGGGCCAGGGCGGAGTGTTGCCTGGGGGCCACCAGCCTCAGGAAGCCCAAGGCC--TCCTCCAAGCAGGAGTTCTCTCACAGCCAGAGCCGCCCCACCCCATATGGCCCAGTGTCCGTCACTCAAAGCTCACCTTTTCCTTGAGCCTCTGGTCAGCCGACAAGCCCTGACTGCTCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181208990 239 - 181584905 GGG-ACCTGCAGCTGCTTGCTCCTCATCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGAGTCCCTTAGGGCCAGGGCGGAGTGTTGCCTGGGGGCCACCAGCCTCAGGAAGCCCAAGGCC--TCCTCCAAGCAGGAGTTCTCTCACAGCCAGAGCCGCCCCACCCCATATGGCCCAGTGACCGTCACTCAAAGCTCACCTTTTCCTTGAACCTCTGGTCAGCCGACAAGCCCTGACTGCTCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      203802 239 -   1764207 GGG-ACCTGCAGCTGCTTGCTCCTCATCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGAGTCCCTTAGGGCCAGGGCGGAGTGTTGCCTGGGGGCCACCAGCCTCAGGAAGCCCAAGGCC--TCCTCCAAGCAGGAGTTCTCTCACAGCCAGAGCCGCCCCACCCCATATGGCCCAGTGACCGTCACTCAAAGCTCACCTTTTCCTTGAGCCTCTGGTCAGCCGACAAGCCCTGACTGCTCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      218286 239 -  16742782 GGG-ACCTGCAGCTGCTTGCTCCTCATCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGAGTCCCTTAGGGCCAGGGCGGAGTGTTGCCTGGGGGCCACCAGCCTCAGGAAGCCCAAGGCC--GCCTCCAAGCAGGAGTTCTCTCAGAGCCAGAGCCGCCCCACCCCATATGGCCCAGTGACCGTCACTCAAAGCTCACCTTTTCCTTGAGCCTCTGGTCAGCCGACAAGCCCTGACTGCTCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527612 238 -  91010382 GGG-ACCTGCAGCTGCTTGCTCCTCATCTCTGAGGCTTTGGGGAGCCCAGAGCTCAGAGTCCCTTA-GGCCAGGACAGAGTGTTGCCTGGGGGCCACCAGCCTCAGGAAGCCCAAGGCC--TCCTCCAAGCAGGAGTTCTCTCAGAGCCAGAGCCGCCTCACCCCATATGGCCCCATGACCGTCACTCAAAGCTCGCCTTCTCCTTGAGCCTCTGGTCAGCCGACAAGCCCTGACTGCTCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      116317 239 -    438239 GGG-ACCTGCAGCTGCTTGCTCCTCATCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGAGTCCCTTAGGGCCAGGGCGGAGTGTTGCCTGGGGGCCACCAGCCTCAGGAAGCCCAAGGCC--TCCTCCAAGCAGGAGTTCTCTCAGAGCCAGAGCCGCCCCACCCCATATGGCCCAGTGACCGTCACTCAAAGCTCATCTTTTCCTTGAGCCTCTGGTCAGCCGACAAGCCCTGACTGCTCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      154687 239 -    514179 GGG-ACCTGCAACTGCTTGCTCCTCATCTCTGAGGCTTCGGGGAGCCCAGAGTTTAGAGACCCTTAGGGCCAGGGCAGAGTGTTGCCTGGGGGCCACCAGCCTCAGAAAGCTCAAGGCC--TCCTCCAAGCAGGAGTTCTCTCAGAGCCAGAGCCGCCCCACCCCATATGGCCCAGTGACCGTCACTCACAGCTCACCTTTTCCTTGAGCCTCTGGTCAGTCGACAAGCCCTGACTGCTCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203804745 213 + 204313951 GGG-ACCTGCGGCCACCTGCTCCTCTCCTCTGAGGCTTCCGGGAGCCCAGAGCTCAGTGTCCCTAAGGGCCAGGGCAGAGTGTGGCCT-GGGGCCACCAGCTTCACGAAGCTCGAGGCC--TCCTCCAAGCGGGAGTTCCCTG-------------------CTTTCAGGG--CAGTGGCCATCACTCAAAGCTTACCTTCTCCTTGAGCCTCTGGTCAGCTGGC-AGCCCTGACTGCT---
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15965009 234 +  16417988 GGGAACCTGTGGCCACCTGCTCCTCTTCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGCGTCCCTGAGGGCCAGGGCAGAGTGTGGCCT-GGGGCTACCAGCTTCAGGAAGCTCCAGGCC--TCCCCCAAACGGGAGCTCCCTGAAAGCCAGAGTCACCCA-CTCCACATGGCCCAGTGGCCATCACTCAAAGCTCACCTTCTCCTTGAGCCTCTGGTCAGCTGGC-AGCCCTGACTGCT---
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       45103 236 +    298490 GGG-ACCCGCAGCCGCCTGCTCCTCTCCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGCGTCTCCGAGGGCCAGGGCAGAGTGTGGCCT-GGGGCCACCAGCTTCAGGAAGCTCCAGGCC--TCCTCCAAGCAGGAGTTCCCTGAAAGCCAGAGCCACCCC-CACCACGTGGCCCAGTGGCCATCACTCAAAGCTTACCTTCTCCTTGAGCCTCTGGTCGGCTGGC-AGCCCTGACTGCTCCC
i cebCap1.NW_016108158v1   C 0 I 26
s aotNan1.NW_018503740v1    25368518 236 -  25620257 GGG-ACCTGCGGCCACCTACTCCTCTCCTCTGAGGCTTCGGGGAGCCCAGAGCTCAGCGTCCCTGAGGGCCAGGGCAGAGTGTGGCCT-GGGGCCACCAGCTTCAGGAAGCTCGAGGCC--TCCTCCAAGCGGGAGTTCACTGAAAGCCAGAGCCACCCC-CTCCACGTGGCCCAGTGGCCATCACTCAAAGCTCACCTTCTCCTTGAGCCTCTGGTCAGCTGGC-AGTCCTGACTGCTCCC
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11689193 178 +  42124431 GGG-GTCTGCAG---CCTGCTCCCCACCTCTGAGGCTCTAGTGAGTACAGGGCTCAGGGGCCTTT--GGACCAGGCAGAGTGTGGCCA-------------CACAGAACTCCCCATCCTGGTCCTCTGCTCAGGAG-----------CCTGGGTCATCCACCC-------------TAACCACTCCAGAGAGCGTGCCCCCCGCCCCAGCC---------------AACACTGATC------
i canFam3.chr34            I 1077 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I

a score=163388.000000
s hg38.chr5_KI270793v1_alt     22202 30 +    126136 gggcccctggcccctggccacgtcccccct
s panTro5.chr5             181289612 30 - 181907262 GGGACCCTGGCCCCTGGCCACGTCCCCCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009955 30 - 183735486 GGGACCCTGGCCCCTGGCCACATCCCCCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      100420 30 +    698298 aggcccctggcccctggccacgtcccccct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120524257 26 - 121039945 ----ccctggccactggccacatcccccct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179478135 29 - 180051392 CGGCCACTGGCCCCTGGCCACGT-CCCCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181209229 30 - 181584905 CGGCCACTGGCCCCTGGCCACGTcccccct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      204041 30 -   1764207 TGGCCACTGGCCCCTGGCCACGTcccccct
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      218525 30 -  16742782 TGGCCACTGGCCCCTGGCCACGTcccccct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527850 30 -  91010382 TGGCCCCTGGCCACTGGCTACGTCCCCCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      116556 30 -    438239 TGGCCACTGGCCCCTGGCCACGTCCCCCCT
i manLeu1.NW_012110441v1   C 0 I 279
s colAng1.NW_012118799v1      154926 30 -    514179 TGGCCCCTGGCCACTGGCCATGTcccccct
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203804958 21 + 204313951 ----CCCTGGCCGCTTGCCGTGCCT-----
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15965243 21 +  16417988 ----CCCTGGCTGCTTGTCACACTT-----
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25368754 18 -  25620257 -------TGGCCGCTTGCCATGCCT-----
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11689371 27 +  42124431 ---CCCGCAGACCGTGGCCTCACCTTGCCC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e cebCap1.NW_016108158v1       45339 26 +    298490 I

a score=2970.000000
s hg38.chr5_KI270793v1_alt     22232 14 +    126136 cctg-cccct---gCACC---
s panTro5.chr5             181289642 14 - 181907262 CCTG-CCCCT---GCACC---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009985 14 - 183735486 CCTG-CCCCT---GCACC---
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      100450 14 +    698298 cctg-cccct---gcccc---
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120524283 15 - 121039945 cctgccccct---gcccc---
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179478164 14 - 180051392 CCCA-CCCCC---ACCCC---
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181209259 14 - 181584905 ccca-ccccc---acccc---
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      204071 15 -   1764207 cccacccccc---acccc---
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      218555 17 -  16742782 ccca-cccccccaccccc---
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527880 15 -  91010382 CCCACTCCCC---ACCCC---
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      154956 17 -    514179 ccca-cccccccaacccc---
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203804979  8 + 204313951 CCCG-CCAC------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15965264  8 +  16417988 TCCG-CCAC------------
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25368772  8 -  25620257 CCCG-CCAC------------
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11689398 16 +  42124431 -CCA-GCAGG---ACGCTGTT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e cebCap1.NW_016108158v1       45339 26 +    298490 I
e manLeu1.NW_012110441v1      116586 279 -    438239 I

a score=-8392.000000
s hg38.chr5_KI270793v1_alt     22246 5 +    126136 CCATG
s panTro5.chr5             181289656 5 - 181907262 CCATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183009999 5 - 183735486 CCATG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      100464 5 +    698298 cCATG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120524298 5 - 121039945 ccgcG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179478178 4 - 180051392 CCCG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181209273 4 - 181584905 cccG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      204086 4 -   1764207 cccG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      218572 4 -  16742782 cccG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527895 4 -  91010382 CCCG-
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      154973 4 -    514179 cccG-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203804987 5 + 204313951 CGGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15965272 5 +  16417988 CCGTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       45365 5 +    298490 CCGTG
i cebCap1.NW_016108158v1   I 26 C 0
s aotNan1.NW_018503740v1    25368780 5 -  25620257 CCGTG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11689414 5 +  42124431 CCTTG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e manLeu1.NW_012110441v1      116586 279 -    438239 I

a score=5473805.000000
s hg38.chr5_KI270793v1_alt     22251 612 +    126136  
s panTro5.chr5             181289661 612 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010004 612 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      100469 604 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120524303 619 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179478182 610 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181209277 610 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      204090 610 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      218576 610 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90527899 609 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      116865 609 -    438239  
i manLeu1.NW_012110441v1   I 279 C 0
s colAng1.NW_012118799v1      154977 611 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203804992 603 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15965277 601 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       45370 603 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25368785 690 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11689419 597 +  42124431  
i canFam3.chr34            C 0 I 202
e otoGar3.GL873745           1847140 1411 -   2165740 I

a score=208494.000000
s hg38.chr5_KI270793v1_alt     22863 22 +    126136 CTAGGACTAGACTGTGGCTAAG
s panTro5.chr5             181290273 22 - 181907262 CTAGGACTAGACTGTGGCTAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010616 22 - 183735486 CTAGGACTAGACTGTGGCTAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101073 22 +    698298 CTAGGACTAGACTGTGGCTAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120524922 22 - 121039945 CTAGGACTAGATTGTGGCTAAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179478792 22 - 180051392 CTAGGCCTAGACTGCGGCTAAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181209887 22 - 181584905 CTAGGCCTAGACTGCGGCTAAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      204700 22 -   1764207 CTAGGCCTAGACTGCGGCTAAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219186 22 -  16742782 CTAGGCCTAGACTGCAGCTAAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528508 22 -  91010382 CTAGGCCTAGACTGCGGCTAAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117474 22 -    438239 CTAGGCCTAGACTGCGGCTAAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155588 22 -    514179 CTAGGCCTAGACTGTGGCTAAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203805595 22 + 204313951 CTAGGCCTAGACTGTGGCTGAG
i calJac3.chr2             C 0 I 883
s saiBol1.JH378155          15965878 22 +  16417988 CCAGGCCTAGACTGTGGCTGAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       45973 22 +    298490 TTGGGCCGAGACCCTGGCTGAG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25369475 22 -  25620257 CTAGGCCTAGACTGCAGCTGAG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e canFam3.chr34             11690016 202 +  42124431 I

a score=1016435.000000
s hg38.chr5_KI270793v1_alt     22885 148 +    126136 AGAAAGAAAACACAACAGCTGAGTGA---CTGTTGCACCCAATGCCTTCCTGTGGACCCTGGCATCTGCCGAGGTGGCGGGCAGAGCTTAGGTGGCGCGGGCACAGCTTAGGTGGCACAGGCACGTGTGCAGGTGCCCGTAACAAGGCCTG
s panTro5.chr5             181290295 128 - 181907262 AGAAAGAAAACACAACAGCTGAGTGA---CTGTTGCACCCAACGCCTTCCTGTGGACCCTAGCGTCTGCCGAGGTGGCGGGCA--------------------CAGCTTAGGTGGCACGGGCACGTGTGCAGGTGCCCGTAACAAGGCCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010638 128 - 183735486 AGAAAGAAAACACAACAGCTGAGTGA---CTGTTGCACCCAACGCCTTCCTGTGGACCCTGGCGTCTGCCGAGGTGGCGGGCA--------------------CAGCTTAGGTGGCACGGGCACGTGTGCAGGTGCCCGTAACAAGGCCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101095 128 +    698298 AGAAAGAAAACACAACAGCTGAGTGA---CTGTTGTACCCAACGCCTTCCTGTGGACCCTGGCATCTGCCAAGGTGGCGGGCA--------------------CAGCTTAGGTGGCACAGGCATGTGTGCAGGTGCCCGTAACAAGGCCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120524944 128 - 121039945 AGAAAGAAAACACAACAGCTGAGTGA---CTGTTGCACCCAATGCCTTTCTGTGGACCCTGGCATCTGCCGAGGTGGTGGGCA--------------------CAGCATAGGTGGCCCAGGCATGTGTGCAGGTGCCCGTAACAAGGCCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179478814 128 - 180051392 AGAAAGAAAACACGACAGCTGAGTGA---CTGTTGTGCCCAATGCCTTCCTGTGGACCCTGGCATCTGCCGAGGTGGTGGGCA--------------------CAGCATAGGTGGCACAGGCACATGTGAAGGTGCCTGTAAGAAGGCCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181209909 128 - 181584905 AGAAAGAAAACACGACAGCTGAGTGA---CTGTTGTGCCCAATGCCTTCCTGTGGACCCTGGCATCTGCCGAGGTGGTGGGCA--------------------CAGCATAGGTGGCACAGGCACATGTGAAGGTGCCTGTAAGAAGGCCTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      204722 128 -   1764207 AGAAAGAAAACACGACAGCTGAGTGA---CTGTTGTGCCCAATGCCTTCCTGTGGACCCTGGCATCTGCCGAGGTGGTGGGCA--------------------CAGCATAGGTGGCACAGGCACATGTGAAGGTGCCTGTAAGAAGGCCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219208 128 -  16742782 AGAAAGAAAACACGACAGCTGAGTGA---CTGTTGTGCCCAATGCCTTCCTGTGGACCCTGGCATCTGCCGAGGTGGTGGGCA--------------------CAGCATAGGTGGCACAGGCACATGTGAAGGTGCCTGTAAGAAGGCCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528530 128 -  91010382 AGAAAGAAAACACGACAGCTGAGTGA---CTGTTGTGCCCAATGCCTTCCTGTGGACCCTGGCATCTGTCGAGGTGGTGGGCA--------------------CAGCATAGGTGGCACAGGCACATGTGAAGGTGCCTGTAAGAAGGCCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117496 128 -    438239 AGAAAGAAAACACGACAGCTGAGTGA---CTGTTGTGCCCAATGCCTTCCTGTGGACCCTGGCATCTGCCGAGGTGGTGGGCA--------------------CAGCATAGGTGGCACAGGCACATGTGAAGGTGCCTGTAAGAAGGCCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155610 128 -    514179 AGAAAGAAAACACGACAGCTGACTGA---CTATTGTGCCCAGTGCCTTCCTGTGGACCCTGGCATCTGCCGAGGTGGTGGGCA--------------------TAGCATAGGTGGCACAGGTACATGTGAAGGTGCCTGTAAGGAGGCCTG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15965900 131 +  16417988 AGAAAGAGGGCACAAGCATTGAATAACTGCTGCTGCACCTGGCGCCTTCACATGGACCCTGGCATCTTCTGACATGCTGGGCG--------------------CAGCGTAGGTGGCACAGGCTTGCATGCAGGTGCCCATACCAAGGCCTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       45995 131 +    298490 AGAAAGAGGGCACAAGCGTTGAATGACTGCTGCTGTGCCTGGCGCCTTCCCACGGACCCTGGCATCTCCCGACGTGCTGGGTG--------------------CAGCATAGGTGGCACAGGCTTGTGTGCAGGTGCCCGTACCAAGGCCTG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25369497 131 -  25620257 AGAAAGAGGGCACAAGCGTTGAGTGACTGCTGCTGTGCCTGGCGCCTTCCCATGGACCCTGGCATCTCCCGACGTGCTGGGCG--------------------CAGCGTAGGTGGCACAGGCTTGTGTGCAGGTGCCCGTACCAAGGCCTG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1847140 1411 -   2165740 I
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I

a score=1285045.000000
s hg38.chr5_KI270793v1_alt     23033 139 +    126136 GAAGGAGGCTGTGCCTGCCCAGCGGAGGGACCCCCTTTCTCTGTGGGGAGATAGAGCCCCGGGAGGGGGCAGGAGCTGGAGCATGGGAGTGGCTGGGGCTGCGGAGGGGAGCTCTGGAGGACCCCACCTTCCCAGGGCT
s panTro5.chr5             181290423 139 - 181907262 GAAGGAGGCTGTGCCTGCCCAGCGGAGGGACCCCCTTTCTCTGTGGGGAGATAGAGCCCCGGGAGGGGGCAGGAGCTGGAGCATGGGAGTGGCTGGGGCTGCGGAGGGGAGCTCTGGAGGACCCCACCTTCCCAGGGCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010766 139 - 183735486 GAAGGAGGCTGTGCCTGCCCAGCGGAGGGACTCCCTTTCTCTGTGGGGAGATAGAGCCCCGGGAGGGGGCAGGAGCTGGAGCATGGGAGTGGCTGGGGCTTCGGAGGGGAGCTCTGGAGGACCCCACCTTCCCAGGGCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101223 139 +    698298 GAAGGAGGCTGTGCTTGCCCAGCGGAGGGACCCCCTTTCTCTGTGGGGAGATAGAGCCCCGGGAGGGGGCAGGAGCTGGAGCATGGGAGTGGCTGGGGCTGCGGAGGGGAGTTCTGGAGGACCCCACCTTCCCAGGGCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525072 139 - 121039945 GAAGGAGGCTGTGCCTGCCCAGTGGAGGGACCCCCTTTCTCCGTGGGGAGATAGAGCCCCGGGAGGGGGCAGGAGCTGCAGCATGGGAGCGGCTGGGGCTGCGGAGGGGAGCTCTTGAGGACCCCACCTTCCCAGGGCT
i nomLeu3.chr6             C 0 I 2
s rheMac8.chr6             179478942 139 - 180051392 GAAGGAGGCTGTGCCTGCCCAGCCGAGGGACCCCCTTTCTCCATGGGGAGATAGAGCCCCAGGAGggggcaggagctggagcatgggagtggctggagctgCGGAGGGGAGCTCTGGAGGACCCCACCTTCCCAGGGCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210037 139 - 181584905 GAAGGAGGCTGTGCCTGCCCAGCCGAGGGACCCCCTTTCTCCATGGGGAGATAGAGCCCCAGGAGggggcaggagctggagcatgggagcggctggagctgCGGAGGGGAGCTCTGGAGGACCCCACCTTCCCAGGGCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      204850 139 -   1764207 GAAGGAGGCTGTGCCTGCCCAGCCGAGGGACCCCCTTTCTCCATGGGGAGATAGAGCCCCAGGAGggggcaggagctggagcatgggagtggctggagctgCGGAGGGGAGCTATGGAGGACCCCACCTTCCCAGGGCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219336 139 -  16742782 GAAGGAGGCTGTGCCTGCCCAGCCGAGGGACCCCCTTTCTCCATGGGGAGATAGAGCCCCAGGAGggggcaggagctggagcatgggagtggctggagctgCGGAGGGGAGCTCTGGAGGACCCCACCTTCCCAGGGCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528658 139 -  91010382 GAAGGAGGCTGTGCCTGCCCAGCCGAGGGACCCCCTTTCTCCATGGggagctagagccccaggagggggcaggagctggagcatgggagtggctggagctgCGGAGGGGAGCTCTGGAGGACCCCACCTTCCCAGGGCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117624 139 -    438239 GAAGGAGGCTGTGCCTGCCCAGCCGAGGGACCCCCTTTCTCCATGGGGAGATAGAGCCCCAGGAGggggcaggagctggagcatgggagtggctggagctgCGGAGGGGAGCTCTGGAGGACCCCACCTTCCCAGGGCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155738 139 -    514179 GAAGGAGGCTGTGCCTGCCCAGCCGAGGGACCCCCTTTCTCCATGGGGAGATAGAGCCCCAGGAGggggcaggagctggagcatgggagtagctggagctgCGGAGGGGAGCTCTGGAGGACCCCACCTGCCCAGGGCT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966031 138 +  16417988 GAAGGAGGCTGTGCCCGCCCAGCGGAGCGGTCCCCTTTCTCCCTGGGGAGATAGAGCCCCAGGAGGG-TCAGGAGCAGGAGCATGGGAGTGGCTGGGGCTGCGGAGGGGAGCTCTGGAGGACCCCACCTGTCTACGGCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       46126 138 +    298490 GAAGGAGGCTGTGCCCGCCCAGCGGAGCGGCCCCCTTTCTTCATGGGGAGATAGAGCCCCGGGAGGG-TCAGGAGCAGGAGCATGGGAGTGGCTGGGACTGCGGAGGGGAGCTCTGGAGGACCCCGCCTGCCCAGGGCT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25369628 137 -  25620257 GAAGGAGGCTGTGCCCACCCAGCAGAGCGGCCCCCTTTCTCCATGGGGAGATAGAGCCCCAGGAGGG--CAGGAGCAGGAGCATGGGAGTGGCTGGGGCTGCGGAGGGGAGCTCTGGAGGACCCCGCCTGCCCAGGGCT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1848551  96 -   2165740 GGAGAAACCTGTGCCAGCCCAG-AGTGGGGCCTCCTTCCCACCTGGGG--------------------GCCTGTGCCAGTTCAGGGTGG--GCTGGAACTG----GGGGAGCACTGCAGGAGT----------------
i otoGar3.GL873745         I 1411 C 0
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I

a score=2980.000000
s hg38.chr5_KI270793v1_alt     23172 2 +    126136 AG-
s panTro5.chr5             181290562 2 - 181907262 CG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010905 2 - 183735486 CG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101362 2 +    698298 CA-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179479081 2 - 180051392 TG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210176 2 - 181584905 TG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      204989 2 -   1764207 TG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219475 2 -  16742782 TG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528797 2 -  91010382 TG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117763 2 -    438239 TG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155877 2 -    514179 TG-
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966169 2 +  16417988 TG-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       46264 2 +    298490 CG-
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25369765 2 -  25620257 CG-
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1848647 2 -   2165740 -GG
i otoGar3.GL873745         C 0 C 0
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e nomLeu3.chr6             120525211 2 - 121039945 I

a score=153323.000000
s hg38.chr5_KI270793v1_alt     23174 18 +    126136 GACAGAGGGAGCCGGC---TG
s panTro5.chr5             181290564 18 - 181907262 GACAGAGGGAGCCGGC---TG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010907 18 - 183735486 GACAGAGGGAGCCGGC---TG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101364 18 +    698298 GACAGAGGGAGCCGGC---TG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525213 18 - 121039945 GACAGAGGGAGCCAGC---TG
i nomLeu3.chr6             I 2 C 0
s rheMac8.chr6             179479083 18 - 180051392 GACAGAGGGAGCCAGC---TG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210178 18 - 181584905 GACAGAGGGAGCCAGC---TG
i macFas5.chr6             C 0 I 2
s macNem1.NW_012012389v1      204991 18 -   1764207 GACAGAGGGAGCCAGC---TG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219477 18 -  16742782 GACAGAGGGAGCCAGC---TG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528799 13 -  91010382 GACAGAGGGAGCC--------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117765 18 -    438239 GACAGAGGGAGCCAGC---TG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155879 18 -    514179 GACAGAGGGAGCCAGC---TG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966171 18 +  16417988 GACAGAGGGAGCCAGC---TG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       46266 18 +    298490 GACAGAGGGGGCCACC---TG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25369767 18 -  25620257 GACAGAGGGAGCCAGC---TG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1848649 21 -   2165740 GAGGAATGGACCCCACGCATG
i otoGar3.GL873745         C 0 C 0
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I

a score=17381.000000
s hg38.chr5_KI270793v1_alt     23192 2 +    126136 CT
s panTro5.chr5             181290582 2 - 181907262 CT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010925 2 - 183735486 CT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101382 2 +    698298 CT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525231 2 - 121039945 CT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479101 2 - 180051392 CT
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      205009 2 -   1764207 CT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219495 2 -  16742782 CT
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      117783 2 -    438239 CT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155897 2 -    514179 CT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966189 2 +  16417988 CT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       46284 2 +    298490 CT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25369785 2 -  25620257 CT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1848670 2 -   2165740 CT
i otoGar3.GL873745         C 0 C 0
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e chlSab2.chr4              90528812 0 -  91010382 C
e macFas5.chr6             181210196 2 - 181584905 I

a score=100486.000000
s hg38.chr5_KI270793v1_alt     23194 13 +    126136 -GGGGACGTCCCTC
s panTro5.chr5             181290584 13 - 181907262 -GGGGACGTCCTTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010927 13 - 183735486 -GGGGACGTCCTTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101384 13 +    698298 -GGGGACGTCCCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525233 13 - 121039945 -GGGGACGTCCCTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479103 13 - 180051392 -GGGGACGTCCCTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210198 13 - 181584905 -GGGGACGTCCCTC
i macFas5.chr6             I 2 C 0
s macNem1.NW_012012389v1      205011 13 -   1764207 -GGGGACGTCCCTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219497 13 -  16742782 -GGGGACGTCCCTC
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      117785 13 -    438239 -GGGGACGTCCCTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155899 13 -    514179 -GGGGACGTCCCTC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966191 13 +  16417988 -GGGGACGTTCCTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       46286 13 +    298490 -GGGGACGTTCCTC
i cebCap1.NW_016108158v1   C 0 I 10
s aotNan1.NW_018503740v1    25369787 13 -  25620257 -GGGGACGTTCCTC
i aotNan1.NW_018503740v1   C 0 I 1062
s otoGar3.GL873745           1848672  4 -   2165740 CAGG----------
i otoGar3.GL873745         C 0 C 0
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e chlSab2.chr4              90528812  0 -  91010382 C

a score=29100.000000
s hg38.chr5_KI270793v1_alt     23207 6 +    126136 CATCTG
s panTro5.chr5             181290597 6 - 181907262 CGTCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010940 6 - 183735486 CGTCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101397 6 +    698298 CATCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525246 6 - 121039945 CATCTG
i nomLeu3.chr6             C 0 T 41
s rheMac8.chr6             179479116 6 - 180051392 TATCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210211 6 - 181584905 TATCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205024 6 -   1764207 TATCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219510 6 -  16742782 TATCTG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      117798 6 -    438239 TATCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155912 6 -    514179 CATCTG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966204 6 +  16417988 TGTCTG
i saiBol1.JH378155         C 0 I 1
s otoGar3.GL873745           1848676 1 -   2165740 -----G
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25369800 1062 -  25620257 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e chlSab2.chr4              90528812 0 -  91010382 C

a score=-5632.000000
s hg38.chr5_KI270793v1_alt     23213 2 +    126136 CT-
s panTro5.chr5             181290603 2 - 181907262 TT-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010946 2 - 183735486 TT-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101403 2 +    698298 CT-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179479122 2 - 180051392 CT-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210217 2 - 181584905 CT-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205030 1 -   1764207 C--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219516 2 -  16742782 CT-
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      117804 2 -    438239 CT-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155918 2 -    514179 CT-
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966211 1 +  16417988 C--
i saiBol1.JH378155         I 1 C 0
s otoGar3.GL873745           1848677 2 -   2165740 -TT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25369800 1062 -  25620257 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e nomLeu3.chr6             120525252 41 - 121039945 T
e chlSab2.chr4              90528812 0 -  91010382 C

a score=4180.000000
s hg38.chr5_KI270793v1_alt     23215 2 +    126136 CA
s panTro5.chr5             181290605 2 - 181907262 TG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010948 2 - 183735486 TG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101405 2 +    698298 CG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525211 2 - 121039945 CA
i nomLeu3.chr6             T 41 C 0
s rheMac8.chr6             179479124 2 - 180051392 TG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210219 2 - 181584905 TG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      219518 2 -  16742782 TG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      117806 2 -    438239 TG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155920 2 -    514179 TG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966212 2 +  16417988 CA
i saiBol1.JH378155         C 0 T 48
s otoGar3.GL873745           1848679 2 -   2165740 CA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25369800 1062 -  25620257 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e chlSab2.chr4              90528812 0 -  91010382 C
e macNem1.NW_012012389v1      205031 0 -   1764207 C

a score=10075.000000
s hg38.chr5_KI270793v1_alt     23217 5 +    126136 GACAG
s panTro5.chr5             181290607 5 - 181907262 GACGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010950 5 - 183735486 GACGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101407 5 +    698298 GACAG
i gorGor5.CYUI01015805v1   C 0 I 129
s nomLeu3.chr6             120525213 5 - 121039945 GACAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479126 5 - 180051392 GACGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210221 5 - 181584905 GACGG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      219520 5 -  16742782 GACGG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      117808 5 -    438239 GACGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155922 2 -    514179 GA---
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1848681 5 -   2165740 GGTAG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25369800 1062 -  25620257 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e saiBol1.JH378155          15966214 48 +  16417988 T
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e chlSab2.chr4              90528812 0 -  91010382 C
e macNem1.NW_012012389v1      205031 0 -   1764207 C

a score=15026.000000
s hg38.chr5_KI270793v1_alt     23222 13 +    126136 AGGGAGCTGGCTG
s panTro5.chr5             181290612 13 - 181907262 AGGGAGCTGGCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010955 13 - 183735486 AGGGAGCTGGCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101541 13 +    698298 AGGGAGCTGGCTG
i gorGor5.CYUI01015805v1   I 129 C 0
s macFas5.chr6             181210226 12 - 181584905 -GGGAGCCAGCTG
i macFas5.chr6             C 0 T 42
s otoGar3.GL873745           1848686 13 -   2165740 AGGGAGCAGCCTG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25369800 1062 -  25620257 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e saiBol1.JH378155          15966214 48 +  16417988 T
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e nomLeu3.chr6             120525218  0 - 121039945 C
e manLeu1.NW_012110441v1      117813  0 -    438239 C
e chlSab2.chr4              90528812  0 -  91010382 C
e cerAty1.NW_012009470v1      219525  0 -  16742782 C
e colAng1.NW_012118799v1      155924  0 -    514179 C
e macNem1.NW_012012389v1      205031  0 -   1764207 C
e rheMac8.chr6             179479131  0 - 180051392 C

a score=20116.000000
s hg38.chr5_KI270793v1_alt     23235 20 +    126136 CTAGGGACGTCCCTCCGTCT
s panTro5.chr5             181290625 20 - 181907262 CTGGGGACGTCCCTCCGTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010968 20 - 183735486 CTGGGGACGTCCCTCCGTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101554 20 +    698298 CTGGGGACGTCCCTCCGTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181210196 20 - 181584905 CTGGGGACGTCCCTCTATCT
i macFas5.chr6             T 42 C 0
s otoGar3.GL873745           1848699 20 -   2165740 AGATGGGTGTCTCTCTGCCT
i otoGar3.GL873745         C 0 I 2305
e aotNan1.NW_018503740v1    25369800 1062 -  25620257 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e saiBol1.JH378155          15966214 48 +  16417988 T
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e nomLeu3.chr6             120525218  0 - 121039945 C
e manLeu1.NW_012110441v1      117813  0 -    438239 C
e chlSab2.chr4              90528812  0 -  91010382 C
e cerAty1.NW_012009470v1      219525  0 -  16742782 C
e colAng1.NW_012118799v1      155924  0 -    514179 C
e macNem1.NW_012012389v1      205031  0 -   1764207 C
e rheMac8.chr6             179479131  0 - 180051392 C

a score=143442.000000
s hg38.chr5_KI270793v1_alt     23255 43 +    126136 GTTTGGACACAGGGAGCTGGCTGCTGGGGACGTCCCTCCGTCT
s panTro5.chr5             181290645 43 - 181907262 GTTCAGACAGAGGGAGCCGGCTGCTGGGGACGTCCCACCATCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183010988 43 - 183735486 GTTTGGACGTAGGGAGCTGGCTGCTGGGGACGTCCCTCCGTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101574 43 +    698298 GTTTGGACACAGGGAGCTGGCTGCTGGGGACGTCCTTCCGTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525218 33 - 121039945 ----------AGGGAGCCAGCTGCTGGGGACGTCCCTCCATCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479131 32 - 180051392 -----------GGGAGCCAGCTGCTGGGGACATCCTTCTGTCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210216 42 - 181584905 GCTTGGACG-GGGGAGCCAGCTGCTGGGGACATCCTTCTGTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205031 16 -   1764207 --TTGGACG-GGGGAGCCA------------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219525 32 -  16742782 -----------GGGAGCCAGCTGCTGGGGACATCCTTCTGTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528812 25 -  91010382 ------------------AGCTGCTGGGGACATCCTTCTGTCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117813 32 -    438239 -----------GGGAGCTAGCTGCTGGGGACATCCTTCTGTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155924 35 -    514179 -------TG-GGGGAGCCAGCTGCTGGGGACATCCTTCTGTCT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966166 43 +  16417988 GCTTGGACAGAGGGAGCCAGCTGCTGGGGACGTTCCTCTGTCT
i saiBol1.JH378155         T 48 C 0
e aotNan1.NW_018503740v1    25369800 1062 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I

a score=27996.000000
s hg38.chr5_KI270793v1_alt     23298 6 +    126136 GCTCGG
s panTro5.chr5             181290688 6 - 181907262 GTTTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011031 6 - 183735486 GTTTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101617 6 +    698298 GTTTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525251 6 - 121039945 GTTGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479163 6 - 180051392 GCTCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210258 6 - 181584905 GCTCAG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      219557 6 -  16742782 GCTCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528837 6 -  91010382 GCTCGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117845 6 -    438239 GCTCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155959 6 -    514179 GCTCAG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966209 6 +  16417988 GCCCAG
i saiBol1.JH378155         C 0 T 1
s aotNan1.NW_018503740v1    25370862 6 -  25620257 GCTCGG
i aotNan1.NW_018503740v1   I 1062 C 0
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e macNem1.NW_012012389v1      205047 0 -   1764207 C

a score=6006.000000
s hg38.chr5_KI270793v1_alt     23304 1 +    126136 A
s panTro5.chr5             181290694 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011037 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101623 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525257 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479169 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210264 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      219563 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528843 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117851 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155965 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s aotNan1.NW_018503740v1    25370868 1 -  25620257 A
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e saiBol1.JH378155          15966215 1 +  16417988 T
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690016 202 +  42124431 I
e macNem1.NW_012012389v1      205047 0 -   1764207 C

a score=176322.000000
s hg38.chr5_KI270793v1_alt     23305 32 +    126136 CAGAGGGAG---CTGGCTGCTGGGGACGTCCCTCC
s panTro5.chr5             181290695 32 - 181907262 CGTAGGGAG---CTGGCTGCTGGGGACGTCCTTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011038 32 - 183735486 CGTAGGGAG---CTGGCTGCTGGGGACGTCCCTCC
i panPan2.chr5             C 0 I 129
s gorGor5.CYUI01015805v1      101624 32 +    698298 CACAGGGAG---CTGGCTGCTGGGGACGTCCCTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525258 32 - 121039945 CAGAGGGAG---CTGGCTGCTGGAGACGTCCCTCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479170 32 - 180051392 TAGAGAGTG---CTGGCTGCTGGGGACATCCCTCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210265 32 - 181584905 CAGAGAGTG---CTGGCTGCTGGGGACATCCCTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205047 20 -   1764207 ---------------GCTGCTGGGGACATCCCTCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219564 32 -  16742782 CAGAGAGTG---CTGGCTGCTGGGGACGTCCCTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528844 32 -  91010382 CAGAGAGTG---CTGGCTGCTGGGGATGTCCCTCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117852 32 -    438239 CAGAGAGTG---CTGGCTGCTGGGGACGTCCCTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155966 30 -    514179 C--AGAGTG---CTGGCTGCTGGGGACGTCCCTCT
i colAng1.NW_012118799v1   C 0 C 0
s aotNan1.NW_018503740v1    25370869 32 -  25620257 CAGAGGGAG---CCAGCTGCCGGGGACGTTCCTCT
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11690218 35 +  42124431 CAGAGGAAGGGCCTGGTGGGGTGGGCAATCCCTGC
i canFam3.chr34            I 202 C 0
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e saiBol1.JH378155          15966215  1 +  16417988 T
e calJac3.chr2             203805617 883 + 204313951 I

a score=54738.000000
s hg38.chr5_KI270793v1_alt     23337  9 +    126136 GTCTGCCTG---
s panTro5.chr5             181290727  9 - 181907262 GTCTGCCTG---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011199  9 - 183735486 GTCTGCCTG---
i panPan2.chr5             I 129 C 0
s gorGor5.CYUI01015805v1      101656  9 +    698298 GTCTGCCTG---
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525290  9 - 121039945 GTCTGCTTC---
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479202  9 - 180051392 GTCTGCCCG---
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210297  9 - 181584905 GTCTGCCCG---
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205067  9 -   1764207 GTCTGCCCG---
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219596  9 -  16742782 GTCTGCCCG---
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528876  9 -  91010382 GTCTGCCCG---
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117884  9 -    438239 GTCTGCCCG---
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      155996  9 -    514179 GTCTGCCCG---
i colAng1.NW_012118799v1   C 0 C 0
s aotNan1.NW_018503740v1    25370901  9 -  25620257 GTCTGTCCA---
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11690253 12 +  42124431 CTCTGCCCTTGG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       46299 10 +    298490 I
e saiBol1.JH378155          15966215  1 +  16417988 T
e calJac3.chr2             203805617 883 + 204313951 I

a score=1122896.000000
s hg38.chr5_KI270793v1_alt     23346 142 +    126136 --------------------GTGTCCAGCCTGGCCTGAGTCCAGGTCCGAGCAGTC---TGTGTGGATGAAGGAGCGGGTTGGGATGGGGAATAAACAAAAGCCTGAAATGTAATCAGCCGGCTTCGCAGCT--ATGGCGAGCGGGCAGGCCTCCTGCATCCTGGTA
s panTro5.chr5             181290736 142 - 181907262 --------------------GTGTCCAGCCTGGCCTGAGTCCAGGTCCGAGCAGTC---TGTATGGATGAAGGAGCGGGTTGGGATGGGGAATAAACAAAAGCCTGAAATGTCATCAGCCGGCTTCGCAGCT--ATGGCGAGCAAGCAGGCCTCCTGCATCCTGGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011208 142 - 183735486 --------------------GTGTCCAGCCTGGCCTGAGTCCAGGTCCGAGCAGTC---TGTATGGATGAAGGAGCGGGTTGGGATGGGGAATAAACAAAAGCCTGAAATGTCATCAGCCGGCTTCGCAGCT--ATGGCGAGCAAGCAGGCCTCCTGCATCCTGGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101665 142 +    698298 --------------------GTGTCCAGCCTGGCCCGAGTCCAGTTCCGAGCAGTC---TGTGTGGATGAAGGAGCAGGTCGGGATGGGGAATAAACAAAAGCCTGAAATGTCATCAGCCGGCTTTGCAGCT--ATGGCAAGCGGGCAGGCCTCCTGCATCCTGGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525299 142 - 121039945 --------------------ATGTACAGCCTGGCCTGAGTCCAGGTCCAAGCAGTC---TGTGTGGATGAAGGAGTGGGTCGGGATGGGGAATAAACAAAAGCCTGAAATGTAATCAGCCGGCTTCGCAGCT--ATGGCAAGCAAGCAGGCCCCCTGCATCCTGGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479211 142 - 180051392 --------------------GTGTCCAGCCTGGCCTGAGTCCAGGTCCGAGCAGTC---TGTGTGGATGAAGGAGCCGGTCGGGGTGGGGAACAAACAAAAGCCTGAAGTGTAATCAGCTGGCTTCACGGCT--ACGGTGAGCGCATGGGCTTCCTGCCTCCTGGTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210306 142 - 181584905 --------------------GTGTCCAGCCTGGCCTGAGTCCAGGTCCGAGCAGTC---TGTGTGGATGAAGGAGCCGGTCGGGGTGGGGAACAAACAAAAGCCTGAAGTGTAATCAGCTGGCTTCACGGCT--ACGGTGAGCGCGCGGGCCTCCTGCCTCCTGGTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205076 142 -   1764207 --------------------GTGTCCAGCCTGGCCTGAGTCCAGGTCCGAGCAGTC---TGTGTGGATGAAGGAGCCAGTCGGGGTGGGGAACAAACAAAAGCCTGAAGTGTAATCAGCTGGCTTCACGGCT--ACGGTGAGCGCGCGGGCCTCCTGCCTCCTGGTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219605 142 -  16742782 --------------------GTGTCCAGCCTGGCCTGAATCCAGGTCCGAGCAGTC---TGTGTGGATGAAGGAGCCGGTCGGGGTGGGGAACAAACAAAAGCCTGAAATGTAATCAGCTGGCTTCACGGCT--ACGGTGAGCGCGCGGGCCTCCTGCCTCCTGGTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90528885 141 -  91010382 --------------------GTGTCCA-CCTGGCCTGAGTCCAGGTCCGAGCAGTC---TGTGTGGATGAAGGAGCCGGTCAGGGTGGGGAACAAACAAAAGCCTGAAGTGTAATCAGCTGGCTTCACAGCT--ACGGTGAGCGCGCGGGCCTCCTGCCTCCTGGTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      117893 141 -    438239 --------------------GTGTCCA-CCTGGCCTGAGTCCAGGTCCGAGCAGTC---TGTGTGGATGAAGGAGCCGGTCGGGGTGGGGAACAAACAAAAGCCTGAAATGTAATCAGCTGGCTTCACGGCT--ACGGTGAGCGCGCGGGCCTCCTGCCTCCTGGTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156005 138 -    514179 --------------------GTGTCCAGCCTGGCTTGAGTCCAGGTCCAAGTAGCC---TGTGTGGATGAAGGAGCAGGTCGGGGTGGGG----AACAAAAGCCTGAAATGTAATCAGCTGGCTTCACGGCT--ATGGTGAGCGAGCGGGCCTCCTGCCTCCTGGTA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966214 138 +  16417988 --------------------GCGTCCAGCCTGGCCCAAGTCCAGGTCTGAGCAGTCGTTGGGGTGGATGGGGGAGTGAGTCG-GGCAGGG----AACACAAGCCTGAGATGTAATCAGCCGGCTTTGCAGCT--CTGGCGAGCGAGTGGGCCTCCTGCACCCC-GT-
i saiBol1.JH378155         T 1 C 0
s cebCap1.NW_016108158v1       46309 137 +    298490 --------------------GTGTCCAGCCTGGCCCAAGTCCAGGTCTGAGCAGTC---TGGGCGGATGGAGGAGTGGGTCGAGGCAGGG----AACAAAAGCCTGAGATGTAATCAGCCGGCTTTGCAGCT--CTGGTGAGGGAGCGGGCCTCCTGTGCCCC-GTA
i cebCap1.NW_016108158v1   I 10 C 0
s aotNan1.NW_018503740v1    25370910 137 -  25620257 --------------------GCATCCAGCCTGGCCCAAGTCCAGGTCTGAGCAGTC---TGTGTGGATGGAGGAGTGGGTCGGGGCAGGG----AACAAAAGCCTGAGATGTAATCAGCCGACTTTGCAGCT--CTGGCAAGCGAGCGGGCCTCCTGCACCCC-GTA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11690265 152 +  42124431 GTGGAGCACAGGTCCAGTGTGGGTGCAGCCTGG-------CCAAGTGCAGGTGGTT---TGTGCAGATGGTGGAGCCGATGAGGGCTGGGTACAAACAAA--CTGGAAACTCGGTGGACTGGTTTCCCTACTGCACAGGGAGTGAGAA---TTCCTGCAGCCGGACA
i canFam3.chr34            C 0 I 994
e otoGar3.GL873745           1848719 2305 -   2165740 I
e calJac3.chr2             203805617 883 + 204313951 I

a score=753876.000000
s hg38.chr5_KI270793v1_alt     23488 95 +    126136 GTCAGCACTGAGCCCGCTGGAGCCAGCCTTGTCCTCAGAGGCAGCACCGGGAGAATGCAGTGCAGGTGACAGGGGACCTTTGCTGCCCAGAGGCA
s panTro5.chr5             181290878 95 - 181907262 GTCAGCACCGAGCCCGCTGGAGCCAGCCTTGTCCTCAGAGGCAGCACTGGGAGAATGCAGCGCAGGTGACAGGGGACCTTTGCTGCCCAGAGGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011350 95 - 183735486 GTCAGCACCGAGCCCGCTGGAGCCAGCCTTGTCCTCAGAGGCAGCACTGGGAGAATGCAGCGCAGGTGACAGGGGACCTTTGCTGCCCAGAGGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101807 95 +    698298 GTCAGCACTGAGCCCGCTGGAGCCAGCCTTGTCCTCAGAGGCAGCACCGGGAGAATGCAGCGCAGGTGACAGGGGACCTTTGCTGCCCAGAGGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525441 95 - 121039945 GTCAGCACTGAGCCCGCTAGAGCCAGCCTTGTCCTTAGAGGCAGCACCGGGAGAATGAAGTGCAGGTGAGAGGGGACCTTTGCTGCCCAGAGGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479353 95 - 180051392 GTCAGCACCGAGACTGCTGGAGCCAGCCTTGTCCTTAGAGGCAGCACCAGGAGAATGAAGTGTGGGTGAGAGGGGACCTTTGCTGCCCAGAGGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210448 95 - 181584905 GTCAGCACCGAGACTGCTGGAGCCAGCCTTGTCCTTAGAGGCAGCACCAGGAGAATGAAGTGCGGGTGAGAGGGGACCTTTGCTGCCCAGAGGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205218 95 -   1764207 GTCAGCACCGAGACTGCTGGAGCCAGCCTTGTCCTTAGAGGCAGCACCAGGAGAATGAAGTGCGGGTGAGAGGGGACCTTTGCTGCCCAGAGGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219747 76 -  16742782 GTCAGCACCGAGACTGCTGGAGCCAGCCTTGTCCTTAGAGGCAGCACCAGGAGAATGAAGTGCGGGTGAGAGGGG-------------------A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529026 95 -  91010382 GTCAGCACCGAGACTGCTGGAGCCAGCCTTGTCCTTAGAGGCAGCACCAGGAGAATGAAGTGCGGGTGAGAGGGGACCTTTGCTGCCCAGAGGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118034 95 -    438239 GTCAGCACCGAGACTGCTGGAGCCGGCCTTGTCCTTAGAGGCAGCACCAGAAGAATGAAGTGCGGGTGAGGGGGGACCTTTGCTGCCCAGAGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156143 95 -    514179 GTCAGCACCGAGACTGCTGGAGCCAGCCTTGTCCTTAGAGGCAGCACCAGGAGAATGAAGTGCGGGTGAGAGGGGACCTTTGCTGCCCAGAGGCA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966352 87 +  16417988 ATCAGCCCCAAAACCGCTGGAGCAGGCCTTGTCCTCAGAGGCAGCACTGGGAGAATAAAGTGC-GGGGAG-------CTTTGCAGCCCAGAAGCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       46446 94 +    298490 ATCAGCACCAAAACCGCTGGAGCAGGGCTTGTCCTTAGAGGCAGCACTGGGACAATAAAGTAC-GGTGAGAGGGGACCTTTGCAGCCCGGAAGCA
i cebCap1.NW_016108158v1   C 0 I 385
s aotNan1.NW_018503740v1    25371047 94 -  25620257 GTCAGCACCGAGGCTGCTGGAGCGGGCCTTGTCCTTAGAGGCAGCACTGGGAGAATAAAGTGC-GGTGAGAGGGGACCTTTGCAGCCCAGAAGCA
i aotNan1.NW_018503740v1   C 0 I 422
e otoGar3.GL873745           1848719 2305 -   2165740 I
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=55576.000000
s hg38.chr5_KI270793v1_alt     23583 11 +    126136 TGTGGTCTATT
s panTro5.chr5             181290973 11 - 181907262 TGTGGTGTATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011445 11 - 183735486 TGTGGTGTATT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101902 11 +    698298 TGTGGTCTATT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525536 11 - 121039945 TGCGGTCTATT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479448 11 - 180051392 CGCGGTGTATT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210543 11 - 181584905 CGCGGTATATT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205313 11 -   1764207 CGCGGTGTATT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219823 11 -  16742782 CGCGGTTTATT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529121 11 -  91010382 CGCGGTCTATT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118129 11 -    438239 CGTGGTCTATT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156238 11 -    514179 CGCGGTCTATT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15966439 11 +  16417988 CCCAGTCTGTT
i saiBol1.JH378155         C 0 I 379
e aotNan1.NW_018503740v1    25371141 422 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       46540 385 +    298490 I
e calJac3.chr2             203805617 883 + 204313951 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=64856.000000
s hg38.chr5_KI270793v1_alt     23594 9 +    126136 GGCTGCACG
s panTro5.chr5             181290984 9 - 181907262 GGCTGCACG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011456 9 - 183735486 GGCTGCACG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101913 9 +    698298 GGCTGCACG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525547 9 - 121039945 GGTTGCATG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479459 9 - 180051392 GGCTGCAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210554 9 - 181584905 GGCTGCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205324 9 -   1764207 GGCTGCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219834 9 -  16742782 GGCTGCAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529132 9 -  91010382 GGCTGCAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118140 9 -    438239 GGCTGCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156249 9 -    514179 GGCTGCAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806500 9 + 204313951 GGCTACAGG
i calJac3.chr2             I 883 C 0
s saiBol1.JH378155          15966829 9 +  16417988 GGCTACAGG
i saiBol1.JH378155         I 379 C 0
e aotNan1.NW_018503740v1    25371141 422 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       46540 385 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=17402.000000
s hg38.chr5_KI270793v1_alt     23603 2 +    126136 TT
s panTro5.chr5             181290993 2 - 181907262 TT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011465 2 - 183735486 TT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101922 2 +    698298 TT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525556 2 - 121039945 TT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479468 2 - 180051392 TT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210563 2 - 181584905 TT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205333 2 -   1764207 TT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219843 2 -  16742782 TT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529141 2 -  91010382 TC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118149 2 -    438239 TT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156258 2 -    514179 TT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806509 2 + 204313951 TT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15966838 2 +  16417988 TT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       46925 2 +    298490 TT
i cebCap1.NW_016108158v1   I 385 C 0
e aotNan1.NW_018503740v1    25371141 422 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=775165.000000
s hg38.chr5_KI270793v1_alt     23605 87 +    126136 TGTGCTCCTGCAGGAGTCACGGGTGGAACCCCAACCCCAGTGCTGCGGTGTGTGGAGTGGGGTCCTCCCAGTGGGATCAGTGCCCTC
s panTro5.chr5             181290995 87 - 181907262 TGTGCTCCTGCAGGAGTCACGGGTGGAACCCCAATCCCAGTGCTGCGGTGTGTGGAGTGGGGTCCTCCCAGTGGGATCAGTGCCCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011467 87 - 183735486 TGTGCTCCTGCAGGAGTCACGGGTGGAACCCCAACCCCAGTGCTGCGGTGTGTGGAGTGGGGTCCTCCCAGTGGGATCAGTGCCCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      101924 87 +    698298 TGTGCTCCTGCAGGAGTCACAGGTGGAACCCCAACCCCAGTGCTGCGGTGTGTGGAGTGGGGTCCTCCCAGTGGGATCAGTGCCCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525558 87 - 121039945 TGCGCTCCTGCAGGAGTCACAGGTAGAACCCCATCCCCAGTGCTGCGGCGTGTGGAGTGGGGTCCTCCCAGTGGGATCCGTGCACTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479470 87 - 180051392 TGTGCTCCCGCAGGAGTCACAGGTGGAAGCCCAACCCCAGTGCTGCGGCGTGTGGAGTAGGGCCCTCCCAGTGGGATCAGTGCCCTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210565 87 - 181584905 TGTGCTCCCGCAGGAGTCACAGGTGGAAGCCCAACCCCAGTGCTGCGGCGTGTGgagtagggccctcccagtgggatcagtgccctc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205335 87 -   1764207 CGTGCTCCCGCAGGAGTCACAGGTGGAAGCCCAACCCCAGTGCTGCGGCGTGTGGAGTAGGGCCCTCCCAGTGGGATCAGTGCCCTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219845 87 -  16742782 TGTGCTCCCGCAGGAGTCATGGGTGGAAGCCCAAACCCAGTGCTGCGGCGTGTGgagtagggtcctcccagtgggatcagtgccctc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529143 87 -  91010382 TGTGCTCCCACAGGAGTCACGGGTGGAATCCCAACCCCAGTGCTGCGGCGTGTGgagtagggtcctcccagtgggatcagtgccctc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118151 87 -    438239 TGTGCTCCCGCAGGAGTCACGGGTGGAAGCCCAACCCCAGTGCTGCAGCGTGTGGAGTAGGGTCCTCCCAGTGGGATCAGTGCCCTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156260 87 -    514179 TGTGCTCCTGCAGGAGTCACGGGTGGAACCCCAACCCCAGTGCTGCGGCGTGTGGAGTAGGGTCCTCCCAGTGGGATCAGTGTGCTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806511 80 + 204313951 TGTGGTCCTGCAGGAGTCTCGGGTGGAAGCCCCAACCCAGGGCTGTGGCGTTTGGAGGCCAGTCCTCCTGGTGGGATCAG-------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15966840 80 +  16417988 TGTGCTCCTGCAGGAATCCTGGGTGTAAGCCCCAACCCAGGGCTGTGGCGTTTGGAGGCGGGTCCTCCCGCTGGCATCAG-------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       46927 87 +    298490 TGTGCTCCTGCAGGAGTCTGGGGTGGAAGCTCCAACCCAGGGCTGTGGTGTTTGGAGGTGGGTCCTCCTGCTGGGATCAGTGCCCTC
i cebCap1.NW_016108158v1   C 0 I 69
s aotNan1.NW_018503740v1    25371563 87 -  25620257 TGTGCTGCTGCAGGAGTCTCGGGTGGAAGCCCCAACCCAGGGCTGTGGCGTTTGGAGGCAGGTCCTCCTGCTGGGATCAGTGCCCTC
i aotNan1.NW_018503740v1   I 422 I 16
e otoGar3.GL873745           1848719 2305 -   2165740 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=193262.000000
s hg38.chr5_KI270793v1_alt     23692 32 +    126136 ATAGGAGAGGGCTGCCCTCCCCTTTCTCTGTC
s panTro5.chr5             181291082 32 - 181907262 ATAGGAGAGGGCTGCCCTCCCCTTTCTCTGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011554 32 - 183735486 ATAGGAGAGGGCTGCCCTCCCCTTTCTCTGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102011 32 +    698298 ATAGGAGAGGGCTGCCCTCCCCTTTCTCTGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525645 32 - 121039945 ATAGGAGAGGGTTGCCCTCCCCTTTCTCTGTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479557 32 - 180051392 ATAGGAGAGAGTTGCCCTCCCCTTGCTCTGTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210652 32 - 181584905 ataggagagagttgccctccccttgctctgtt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205422 32 -   1764207 ATAGGAGAGAGTTGCCCTCCCCTTGCTCTGTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219932 32 -  16742782 atagaagagaGTTGCCCTCCCCTTGCTCTGTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529230 32 -  91010382 ataggagagggttgccctccccttcctctgct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118238 32 -    438239 ATAGGAGAGAGTTGCCCTCCCCTTGCTCTGTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156347 31 -    514179 ATAGGAGACGGTTGCCCT-TTCTTCCTCTGTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806591 20 + 204313951 ------------TGCCCTCTCCTCTCTctgcc
i calJac3.chr2             C 0 I 3
s saiBol1.JH378155          15966920 20 +  16417988 ------------TGCCCTCCCCTCCCTctgcc
i saiBol1.JH378155         C 0 I 3
e aotNan1.NW_018503740v1    25371650 16 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47014 69 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=448719.000000
s hg38.chr5_KI270793v1_alt     23724 53 +    126136 GCACCGGGAAACCAGGAAGGGCCCTCACTAGGAGGCCAGTCAGCTGGTGCCAG
s panTro5.chr5             181291114 53 - 181907262 GCACCGGGAAACCAGGAAGGGCCCTCACTAGGAGGCCAGTCAGCTGGTGCCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011586 53 - 183735486 GCACCGGGAAACCAGGAAGGGCCCTCACTAGGAGGCCAGTCAGCTGGTGCCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102043 53 +    698298 ACACCGGGAAACCAGGAAGGGCCCTCACTAGGAGGCCAGTCAGCTGGTGCCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525677 53 - 121039945 GCACCAAGAaaccaggaagggccctcactaggaggccagtcagctggtgccag
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479589 53 - 180051392 GCACCAGgaaacgaggaagggccctcaccaggaggccagtcagctggtgcccg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210684 53 - 181584905 gcaccaggaaacgaggaagggccctcaccaggaggccagtcagctggtgcccg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205454 53 -   1764207 GCACCAGgaaacgaggaagggccctcaccaggaggccagtcagctggtgcccg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      219964 53 -  16742782 GCACCAGgaaacgaggaagggccctcaccaggaggccagtcagctggtgcccg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529262 53 -  91010382 gcaccaggaaaccaggaaggaccctcaccaggaggccagtgagctggtgcccg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118270 53 -    438239 GCACCAGgaaacgaggaagggccctcaccaggaggccagtcagctggtgcccg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156378 52 -    514179 GCACCGGgaaac-aggaagggccctcaccaggaggccagtcagctggtgcccg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806614 53 + 204313951 gcaccagggagccgggaagagccctcaccagtaggccagtcggccagcgcccg
i calJac3.chr2             I 3 C 0
s saiBol1.JH378155          15966943 53 +  16417988 gcaccagggagccgggaagagccctcaccagtaggccagtcggccagcgcccg
i saiBol1.JH378155         I 3 C 0
s aotNan1.NW_018503740v1    25371666 53 -  25620257 GCACCAGGGAGCCGGGAAGAGCCCTCACCAGTAGGCCAGTCGGCCGGCGCCCG
i aotNan1.NW_018503740v1   I 16 C 0
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47014 69 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=244443.000000
s hg38.chr5_KI270793v1_alt     23777 23 +    126136 GATCTCCGGCTTCCACCCCAGAG
s panTro5.chr5             181291167 23 - 181907262 GATCTCCGGCTTCCACCCCAGAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011639 23 - 183735486 GATCTCCGGCTTCTACCCCAGAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102096 23 +    698298 GATCTCCGGCTTCTACCCCAGAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525730 23 - 121039945 gatctccggcttccaccccagag
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479642 23 - 180051392 gatctctggcttccactccagag
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181210737 23 - 181584905 gatctctggcttccactccagag
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      205507 23 -   1764207 gatctctggcttccactccagag
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      220017 23 -  16742782 gatctctggcttccactccagag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529315 23 -  91010382 gatctctggcttccactccagag
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118323 23 -    438239 gatctctggcttccactccagag
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156430 23 -    514179 gatctctggcttccactccagag
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806667 23 + 204313951 gatctcaggcttccaccccagag
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15966996 23 +  16417988 gatctccggcttccaccccagag
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       47083 23 +    298490 GATCTCCGGCTTCCACCCCAGAG
i cebCap1.NW_016108158v1   I 69 C 0
s aotNan1.NW_018503740v1    25371719 23 -  25620257 GATCTCCGGCTTCCACCCCAGAG
i aotNan1.NW_018503740v1   C 0 I 2
e otoGar3.GL873745           1848719 2305 -   2165740 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=54397.000000
s hg38.chr5_KI270793v1_alt     23800 7 +    126136 TGGTGGG
s panTro5.chr5             181291190 7 - 181907262 TGGTGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011662 7 - 183735486 TGGTGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102119 7 +    698298 TGGTGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525753 7 - 121039945 cagtggg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479666 7 - 180051392 tggcggg
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181210761 7 - 181584905 tggcggg
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      205531 7 -   1764207 tggcggg
i macNem1.NW_012012389v1   I 1 C 0
s cerAty1.NW_012009470v1      220040 7 -  16742782 tggcggg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529338 7 -  91010382 tggcggg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118346 7 -    438239 tggcagg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156453 7 -    514179 tggcggg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806690 7 + 204313951 cggtggg
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967019 7 +  16417988 cggtggg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       47106 7 +    298490 GGGTGGG
i cebCap1.NW_016108158v1   C 0 I 35
e aotNan1.NW_018503740v1    25371742 2 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=43129.000000
s hg38.chr5_KI270793v1_alt     23807 33 +    126136 AGCTTCCTGTGTCTGCTGCTCAACAAACCTATG
s panTro5.chr5             181291197 33 - 181907262 AGTTTCCTGTGTCTGCTGCTCAACAAACCTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011669 33 - 183735486 AGTTTCCTGTGTCTGCTGCTCAACAAACCTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102126 33 +    698298 AGCTTCCTGTGTCTGCTGCTCAACAAACCTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525760 22 - 121039945 agcttcctgtgtctgctgctca-----------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479673 20 - 180051392 aaa--tctgtgcctgcagctca-----------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210768 20 - 181584905 aaa--cctgtgcctgcagctca-----------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205538 20 -   1764207 aaa--cctgtgtctgcagctca-----------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220047 20 -  16742782 aaa--cctgtgcctgcagctca-----------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529345 20 -  91010382 aaa--cctgtgcctgcagctca-----------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118353 20 -    438239 aaa--cctgagcctgcagctca-----------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156460 20 -    514179 aaa--cctgtgcctgcagctca-----------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806697  9 + 204313951 aaa--tcggcc----------------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967026  9 +  16417988 aaa--tgggcg----------------------
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25371742  2 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47113 35 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=88743.000000
s hg38.chr5_KI270793v1_alt     23840 24 +    126136 TCTGCTGCTCGGGTTGCCCGTGTG
s panTro5.chr5             181291230 24 - 181907262 TCTGCTGCTCCGGTCGCCCGCGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011702 24 - 183735486 TCTGCTGCTCCGGTCGCCCGCGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102159 24 +    698298 TCTGCTGCTCGGGTCGCCCGCGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525782 13 - 121039945 -----------ggctgcctgtgtg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479693 13 - 180051392 -----------ggtcgcccgcgtg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210788 13 - 181584905 -----------ggtcgcccgcgtg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205558 13 -   1764207 -----------ggtcgcccgcgtg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220067 13 -  16742782 -----------ggtcgcccgcgtg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529365 13 -  91010382 -----------ggtcgcccatgtg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118373 13 -    438239 -----------ggtcgcccgcgtg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156480 13 -    514179 -----------ggtcgcccctgtg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806706 24 + 204313951 tctgctgctcaggttgcccgggcc
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967035 24 +  16417988 tcagctgctcctgcggcccgtgcc
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25371744 24 -  25620257 TCTGCCGCTCAGGTGGCCCGTGCC
i aotNan1.NW_018503740v1   I 2 C 0
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47113 35 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=1329142.000000
s hg38.chr5_KI270793v1_alt     23864 138 +    126136 TGGTTTTCTGCTATGGCCACCTGAGCTGATTAAGACCTCCCCCAAAATCTGTGCAAAACCCCAGCGCTTCGAATGTCACCTCTGAGGCAAAAGCTGTGATAAACATAGGGATCTTAAGAGGTGCTTTTCCTGGGTTAT
s panTro5.chr5             181291254 138 - 181907262 TGGTTTTCTGCTACGGCCACCTGAGCTGATTAAGACCTCCCCCAAAATCTGTGCAAAACCCCAGCGCTTCGAATGTCACCTCTGAGGCAAAagctgtgataaacatagggatcttgagaggtgcttctcctgggttat
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011726 138 - 183735486 TGGTTTTCTGCTACGGCCACCTGAGCTGATTAAGACCTCCCCCAAAATCTGTGCAAAACCCCAGCGCTTCGAATGTCACCTCTGAGGCAAAagctgtgataaacatagggatcttgagaggtgcttctcctgggttat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102183 138 +    698298 TGGTTTTCTGCTACGGCCACCTGAGCTGATTAAGACCTCCCCCAAAATCTGTGCAAAACCCCAGCACTTCGAATGTCACCTCTGAGGCAAAAGCTGTGATAAACATAGGGATCTTGAGAGGTGCTTTTCCTGGGTTAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525795 138 - 121039945 tggttttctgctacggccacctgagctgattaagacCTCCCTCAAAATCTGTGCAAAACCCCAGCGCTTTGAATGTCACCTCTTAGGCCAAagctgtgataaacgtagggatcttgagaggtgcttttcctgggttat
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479706 138 - 180051392 tgattttctgctacggccacctgagctgattaagacCTTCCCTCAAATCTGTGCAAAACCCCAGCGCTTTGAATGTCACCTATGAGGCAAAagctgtgataaacgcagggatcttgagaggtgcttttcctgggtcat
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210801 138 - 181584905 tgattttctgctacggccacctgagctgattaagacCTTccctcaaatctgtgcaaaaccccagcactttgaatgtcacctatgaggcaaaagctgtgataaacgcagggatcttgagaggtgcttttcctgggtcat
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205571 138 -   1764207 tgattttctgctacggccacctgagctgattaagacCTTCCCTCAAATCTGTGCAAAACCCCAGCGCTTTGAATGTCACCTATGAGGCAAAagctgtgataaacgcagggatcttgagaggtgcttttcctgggtcat
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220080 138 -  16742782 tgattttctgctacggccacgtgagctgattaagacCTCCCCCCAAACCTGTGCAAAACCCCAGCGCTTTGAATGTCACCTATGAGGCAAAagctgtgataaacacagggatcttgagaggtgcttttcctgggtcat
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529378 138 -  91010382 tgattttctgctacggccacctgagctgattaagacCTTCCCTCAAATCTGTGCAAAACCCCAGCGCTTTGAATGTCACCTATGAGGCAAAagctgtgacaaacgcagggatcttgagaggtgcttttcctgggtcat
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118386 138 -    438239 tgattttctgctacggccgcctgagctgattaagacCTCCCCCGAAATCTGTGCAAAACCCCAGCGCTTTGAATGTCACCTCTGAGGCAAAagctgtgataaacacagggatcttgagaggtgcttttcctgggtcat
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156493 138 -    514179 tgattttctgctacggccacctgagctgattaagacCTCCCCCCAAATCTGTGCAAAACTCCAGCGCTTTGAATGTCACCTATGAGGCAAAAGCCgtgataaacgcagggatcttgagaggtgcttttcctgggttat
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806730 137 + 204313951 tggttttctgctgcggccacctgagctgaccaaaacct-ccccagaatccatgcaaaatcccagcactttgaatgtcacctacgaggcaaaatcggtgattaagttagggatcctgagaggcgcttttcctgggttat
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967059 138 +  16417988 tggtttgctgctgcagccacctgagctgaccaagacCTCCCCCAGAATCTGCGCAAAATCCCAGCACTTTGAATGTCACCTATGCGGCAAAAGCAGCGATTAACTTAGGGATCTCGAGAGGCGCTTCTCCCGGGTTAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       47148 138 +    298490 TGGTTTTCTGCTGCGGCCACTTGAGCTGACCAAGAGCTCCCCTAGAATCCGTGCAAAATCCCAGCACCTTAAATGTCACCTATGAGGCAAAAGTGgtgattaacttagggaacctgagagacgcttttcctgggttat
i cebCap1.NW_016108158v1   I 35 I 62
s aotNan1.NW_018503740v1    25371768 138 -  25620257 TGGTTTTCTGCTGTGGCCACCTGAGCTCACCAAGACCTCCCCCAGAATCCACGCAAAATCCCAGCGTTTTGAATGTCACTTATGAGGCAAAAGCAGTGATTAACTTAGGGATCCTGAGAGGCGCTTTTCCTGGGTTAT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1848719 2305 -   2165740 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=59756.000000
s hg38.chr5_KI270793v1_alt     24002 7 +    126136 CGGGGGG
s panTro5.chr5             181291392 7 - 181907262 cgggggg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011864 7 - 183735486 cgggggg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102321 7 +    698298 CGGGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525933 7 - 121039945 ggggggg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479844 7 - 180051392 cgggggg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210939 7 - 181584905 cgggggg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205709 7 -   1764207 cgggggg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220218 7 -  16742782 cgggggg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529516 7 -  91010382 cgggagg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118524 7 -    438239 cgggggg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156631 7 -    514179 cgggggg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806867 5 + 204313951 --ggggg
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967197 5 +  16417988 --GGGGG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25371906 7 -  25620257 GGGGGGG
i aotNan1.NW_018503740v1   C 0 I 81
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47286 62 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=488100.000000
s hg38.chr5_KI270793v1_alt     24009 101 +    126136 T-GGGGCCTGGGGG-TCTAAATGCATTCACCAATGTCCTTCTAagagacagaagagagacacagagagaagaggcacag-aggagCCGGCCATGGAGCGATACA
s panTro5.chr5             181291399 102 - 181907262 t-ggggcgtggggggtctaaatgcattcacgaatgtccttctaagagacagaagagagacacagagagaagAGGCACGG-AGGAGCCGGCCATGGAGAGATGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011871 102 - 183735486 t-ggggcgtggggggtctaaatgcattcacgaatgtccttctaagagacagaagagagacacagagagaagAGGCACGG-AGGAGCCGGCCATGGAGAGATACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102328 102 +    698298 T-GGGGCATGGGGGTTGTAAATGCATTCACGAATGTCCTTCTAagagacagaagagagacacagagagaagagGCACGG-AGGAGCCGGCCATGGAGAGATACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120525940 101 - 121039945 t-gggg-gtggggggtctaaatgcaatcacgcgtgtccttctaagagacagaagagagacacagagagaagAGACACGG-AGGAGCCAGCCATGGAGAGAGACA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479851  94 - 180051392 t-gggg------gggtctaaatgcaatcatgcgtgtccttgtaagagacagaagagagacac--agagaagAGGCACAG-AGGAGCCAGCCGTGGAGAGATACA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181210946  94 - 181584905 t-gggg------gggtctaaatgcaatcatgcgtgtccttgtaagagacagaagagagacac--agagaagAGGCACAG-AGGAGCCAGCCGTGGAGAGATACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205716  95 -   1764207 tggggg------gggtctaaatgcaatcatgcgtgtccttgtaagagacagaagagagacac--agagaagAGGCACAG-AGGAGCCAGCCGTGGAGAGATACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220225  94 -  16742782 t-gggg------gggtctaaatgcaatcatgcgtgtccttgtaagagacagaagagagacac--agagaagAGGCACAG-AGGAGCCAGCCGTGGAGAGATACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529523  93 -  91010382 t--ggg------gggtctaaatgcaatcatgcgtgtccttgtaagagacagaagagagacac--agagaagAGGCACAG-AGGAGTCAGCCGTGGAGAGATACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118531  94 -    438239 t-gggg------gggtctaaatgcaatcatgcttgtccttgtaagagacagaagagagacac--agagaagAGGCACAG-AGGAGCCAGCCGTGGAGAGATACA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156638  94 -    514179 t-gggg------ggttctaaatgcagtcatgcgtgtccttctaagagacagaagagagagac--agagaagAGACACAG-AGGAACCAGCCGTGGAGAGATACA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806872  79 + 204313951 ---------------gctaaatgcaatcgctcctgtc---ctaagacacaga----aggtgt--ggagaggagagacagaaggagCCCAGGGTGCCTGGAGCC-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967202  85 +  16417988 ----------CGGGAGCTAAATGCAATCACTCCTGTCCTTCTAAGACTCAGA----AGACGT--GGAGTGGAGAGACAG--GGACCCCAGGGCGCCTGGAGGC-
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25371913  81 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47286  62 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=412892.000000
s hg38.chr5_KI270793v1_alt     24110 42 +    126136 GCAGAAGCTGGAGGCGACGGGAGGATCCTGGCCCAGAGCCTC
s panTro5.chr5             181291501 42 - 181907262 GCAGAAGCTGGAGGTGACGGGAGGATCCTGGCCCAGAGCCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183011973 42 - 183735486 GCAGAAGCTGGAGGCGACGGGAGGATCCTGGCCCAGAGCCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102430 42 +    698298 GCAGAAGCTGGAGGCGACGGGAGGATCCTGGCCCAGAGCCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526041 42 - 121039945 GCAGAAGCTGGAGGCAATGGGAGGATGCTGGTCCGGAGCCTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479945 42 - 180051392 GCAGAAGCTGGAGGCAACGGGAGGATCCTGGCCCGGAGCCTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211040 42 - 181584905 GCAGAAGCTGGAGGCAACGGGAGGATCCTGGCCCGGAGCCTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205811 42 -   1764207 GCAGAAGCTGGAGGCAACGGGAGGATCCTGGCCCGGAGCCTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220319 42 -  16742782 GCAGAAGCTGGAGGCAACGGGAGGATCCTGGCCCGGAGCCTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529616 42 -  91010382 GCAGAAGCTGGAGGCAATGGGAGCATCCTGGCCCGGAGCCTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118625 42 -    438239 GCAGAAGCTGGAGGCAACGGGAGGATCCTGGCCCGGAGCCTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156732 42 -    514179 GCAGAAGCTGGAGGCAATGGGAGGATCCTGGCCCGGAGCCTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806951 33 + 204313951 GCAGAGGCT---------AGGAGGATCCTGTCCCAGAGCCTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967287 42 +  16417988 GCAGAAGCTGGAGGCGGCAGGAGGATCCTGTCCCAGAGCCTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       47348 42 +    298490 GCAGAAGCTGGAGGCGGCGGGAGGATCCTGTCCTGGAGCCTC
i cebCap1.NW_016108158v1   I 62 I 9
s aotNan1.NW_018503740v1    25371994 42 -  25620257 GCAGAAGCCGGAGGCGGCGGGAGGATCCTGTCCCGGAGCCTC
i aotNan1.NW_018503740v1   I 81 I 277
e otoGar3.GL873745           1848719 2305 -   2165740 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=162071.000000
s hg38.chr5_KI270793v1_alt     24152 31 +    126136 GGGAGGGAGTGGGGGCCGTGTTCCAGAAGCC
s panTro5.chr5             181291543 31 - 181907262 GGGAGGGAGTGGGGGCCGTGTTCCAGAAGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012015 31 - 183735486 GGGAGGGAGTGGGGGCCGTGTTCCAGAAGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102472 31 +    698298 CGGAGGGAGTGGGGGCCGTGTTCCAGAAGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526083 31 - 121039945 CGGAGGGAGTGGGGGCCGTGTTCCAGAAGCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179479987 31 - 180051392 CAGAGGGAGTGGGGGCCGTGTCCCAGAAGCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211082 31 - 181584905 CAGAGGGAGTGGGGGCCGTGTCCCAGAAGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205853 31 -   1764207 CAGAGGGAGTGGGGGCCGTGTCCCAGAAGCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220361 31 -  16742782 CAGAGGGAGTGGGGGCCGTGTCCCAGAAGCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529658 31 -  91010382 CAGAGGGAGTGGGGGCCGTGTGCCAGAAGCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118667 31 -    438239 CAGAGGGAGTGGGGGCCGTGTCCCAGAAGCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156774 31 -    514179 CAGAGGGAGTGGGGGCCGTGTCCCAGAAGCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806984  9 + 204313951 CAGACGGAG----------------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967329  9 +  16417988 CAGACAGAG----------------------
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25372036 277 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47390  9 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=1019275.000000
s hg38.chr5_KI270793v1_alt     24183 135 +    126136 TGAGAGTCCTGCgtgttgttctgagcccctaaggctggggtagcttgttccagcagtcatgggaaactgacacaTCCCAAACACAGCAGCACGAGAACATAGGACTGAGACACCATCCCCATCACGCCCCAACAC
s panTro5.chr5             181291574 135 - 181907262 TGAGAGTCCTGCgtgttgttctgagcccctaaggctggggtaacttgttccagcagtcatgggaaactgacacaTCCCAAACACAGCAGCACGAGAACATAGGACTGACACACCATCCCCATCACGCCCCAACAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012046 135 - 183735486 TGAGAGTCCTGCgtgttgttctgagcccctaaggctggggtaacttgttccagcagtcatgggaaactgacacaTCCCAAACACAGCAGCACGAGAACATAGGACTGACACACCATCCCCATCACGCCCCAACAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102503 135 +    698298 TGAGAGTCCTGCgtgttgttctgagcccctaaggctggggtaacttgttccagcagtcatgggaaactgacacaTCCCAAACACAGCAGCACGAGAACATAGGACTGAGACACCATCCCCATCACACCCCAACAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526114 135 - 121039945 TGAGAGTTCtgtgtgttgttctgagcccctaaggctggggtaacttgttccagcagtcatgggaagctgacacaTCCCAAACACAGCAGCAGGAGAACACAGGACTGAGACACCATCCCCATCACACCCCAACAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480018 135 - 180051392 TGAGGGTCCTGCgtgttgttctcagcccctaaagctggggtaacttgttccagcaatcacgggaaactgacacGTCCCAAACACAGCCTGGCGAGAACATAGGGCTGAGACATCGTCTCCGTCACACCCCAACAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211113 135 - 181584905 TGAGGGTCCTGtgtgttgttctcagcccctaaagctggggtaacttgttccagcaatcacgggaaactgacacGTCCCAAACACAGCCTGGCGAGAACATAGGGCTGAGACATCGTCTCCGTCACACCCCAACAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      205884 135 -   1764207 TGAGGGTCCTGCgtgttgttctcagcccctaaagctggggtaacttgttccagcaatcacaggaaactgacaTGTCCCAAACACAGCCTGGCGAGAACATAGGGCTGAGACATCGTCTCCGTCACACCCCAACAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220392 135 -  16742782 TGAGGGTCCTGCgtggtgttctgcgcccctaaagctggggtaacttgttccagcagtcacgggaaactgacacGTCCCAAACACAGCCTGGCGAGAACATAGGGCTGAGACATCGTCTCCGTCACACCCCACCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529689 135 -  91010382 TGAGGGTCCTGCATGTTGTTCTGAGCCCCTAAAGCTGGGGTAACTTATTCCAGCAGTCACGGGAAACCGACACGTCCCAAACACAGCCTGGTGAGAACATAGGGCTGAGACATCGTCTCCATCACACCCCAACAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118698 135 -    438239 TGAGGGTCCTGCGTGTTGTTCTGCGCCCCTAAAGCTGGGGTAACTTGTTCCAGCAGTCACGGGAAACTGACACGTCCCAAACACAGCCTGGCGAGAACATAGGGCTGAGACATCGTCTCTGTCACACCCCAACAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156805 135 -    514179 TGAGAGTCCtgtgtgttgttctgagcccctaaagctggggtaacttgttccagcagtcacgggaaactgacacGTCCCAAACACAGCCTGGCGAGAACACAGGGCTGAGACATCGTCTCCGTCACACCCCAACAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203806993 115 + 204313951 TGAGAGTCCCGTGTGTTGTTCTGAGCC---GAGGCTGGG-------GTCACAGCAGTCACGGGAGACTGAGATGTCCCACGCACAGCAGTGCGCGAGAACAGGACTGAGATGTCATCTCCGT----------CAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967338 131 +  16417988 TGAGAGTCCTGTGTGTTGTTCTGAGCC---GAGGCTGGGGTAAC-TGTCACAGCGGTCACGAGAGACTGAGACGTCCCACGCACAGCAGCACGCGAGAGCAGGACTGAGACATCACCTCCGTCACGCCCCGACAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       47399 131 +    298490 TGAGAGTCCCATGTGTTATTCTGAGCC---AAGGCTGGGGTACC-TGTCGCAGCAGTCACGGGAGACTGAGACGTCCCACACACAGCAGCGCGCGAGAGCAGGACTGAGACACCATCTCCGTCACGCCCCGACAC
i cebCap1.NW_016108158v1   I 9 I 228
e aotNan1.NW_018503740v1    25372036 277 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=303909.000000
s hg38.chr5_KI270793v1_alt     24318  56 +    126136 ACGAAGACTGACGGTGGCGGGTGCTGCACATCTCAGCCGGAGCTCTGAAGGCATTT------------------------------------------------------------------------------------
s panTro5.chr5             181291709  56 - 181907262 ACGAAGACTGACGGTGGTGGGTGCTGCACATCTCAGCCGGAGCTCTGAAGGCATTT------------------------------------------------------------------------------------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012181  56 - 183735486 ACGAAGACTGACGGTGGCGGGTGCTGCACATCTCAGCCGGAGCTCTGAAGGCATTT------------------------------------------------------------------------------------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102638  55 +    698298 ACGAAGACTGACGGTGGCGGGTGCTGCACGT-TCAGCCGGAGCTCTGAAGGCATTT------------------------------------------------------------------------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526249  56 - 121039945 ACGAAGACTGACGGTGGCGGGTGCTGCGCATCTCACCCGGAGCTCTGAAGGCATTT------------------------------------------------------------------------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480153  56 - 180051392 ACAAAGACTGACTGTGACGGGTGCTGCGTGTCTCACCCAGAGCTCCGAAGGCATTT------------------------------------------------------------------------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211248  56 - 181584905 ACAAAGACTGACTGTGACGAGTGCTGCGCGTCTCACCCAGAGCTCCGAAGGCATTT------------------------------------------------------------------------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206019  56 -   1764207 ACAAAGACTGACTGTGACGGGTGCTGCGCGTCTCACCCAGAGCTCCGAAGGCACTT------------------------------------------------------------------------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220527  56 -  16742782 ACGAAGACTGACTGTGACGGGTGCTGCGCGTCTCACCCAGAGCTCCGAAGGCATTT------------------------------------------------------------------------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529824  56 -  91010382 ACAAAGACTGACTGTGACGGGTGCTGCACGTCTCACCCAGAGCTCCGAAGGCATTT------------------------------------------------------------------------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118833  56 -    438239 ACAAAGACTGACTGTGACGGGTGCTGCGCGTCTCACCCAGAGCTCCGAAGGCATTT------------------------------------------------------------------------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156940  56 -    514179 ACAAAGACTGACTGTGACGGGTGCTGCGCGTCTCACCCAGAGCTCCGAAGGCATTT------------------------------------------------------------------------------------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807108 140 + 204313951 TCGGAGACGGACACTTGCGGGTGCTGCCCGTCTCACCCGGAGCTCCAAAGGCGTTAGCTGTTCTCTGTTCTGACCTGAGGCCTGACACGCTGCAGCCTGGTCCAGAACCATCCGTAGTCCCTGTCCTTACTCCCCTCGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967469 138 +  16417988 TCGGAGCCGGACACTTGCGGCTGCTGCGC-TCTCAGCCGGAGCTCCAAAGGCGTTAGCTGTTCTCTGTTCTGACCTGAGGCCTGACGCACTGCAGCC-GGTCCAGAACCGTCCATAGTCCCCGTCCTCACTCCCCTCGGG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25372036 277 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47530 228 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=202911.000000
s hg38.chr5_KI270793v1_alt     24374  49 +    126136 AGCTGAGCGCTGGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACCTGGAGAGAGTGAGAGACACCAGCCTCCA
s panTro5.chr5             181291765  49 - 181907262 AGCTGAGCGCTGGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACCTGGAGAGAGTGAGAGACACCAGCCTCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012237  49 - 183735486 AGCTGAGCGCTGGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACCTGGAGAGAGTGAGAGACACCAGCCTCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102693  49 +    698298 AGCTGAGCGCTGGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACCTGGAGAGAGTGAGAGACACCAGCCTCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526305 127 - 121039945 AGCTGAGTCCTGTTCTGACCTGAGGCCTGGCGCCTG---------------------------------------------------------------------------------------C-------------------AGAGCCTTGTCCAGAACCGTCAGGGAGTCCTGGGTCCTCGCTTCCCTCTGGAGCTGTGCACCTGGACGGAGTGAGAGACACCAGCCTCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480209 137 - 180051392 AGTTGAGTCCTGTTCTGACCTGAGGCCTGGCGCCTG----------------------------------------------------------GAGAGCCTTGTCCAGAACCGTCACGGAGTC-----------CTGGGTCCTCGCTCCCCTCGGGAGCTGTGCGCTGGCC---------------------------TGCACCTGGACAGAGCGGGAGACACCAGCCTCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211304 137 - 181584905 AGTTGAGTCCTGTTCTGACCTGAGGCCTGGCGCCTG----------------------------------------------------------GAGAGCCTTGTCCAGAACCGTCACGGAGTC-----------CTGGGTCCTCGCTCCCCTCGGGAGCTGTGCGCTGGCC---------------------------TGCACCTGGACAGAGCGGGAGACACCAGCCTCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206075 137 -   1764207 AGTTGAGTCCTGTTCTGACCTGAGGCCTGGCGCCTG-----------------------------GAGAGCCTTGTCCAGAACCGTCATGGAGT-----------------------------C-----------CTGGGTCCTCGCTCCCCTCGGGAGCTGTGCGCTGGCC---------------------------TGCACCTGGTCAGAGCGGGAGACACCAGCCTCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220583 137 -  16742782 AGTTCAGTCCTGTTCTGACCTGAGGCCTGGCGCCTG----------------------------------------------------------GAGAGCCTTGTCCAGAAC-----------CGTCACGGAGTCCTGGGTCCTCGCTCCCCTCGGGAGCTACACGCTGGCC---------------------------TGCACCTGGACAGAGCGGGAGACACCAGCCTCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90529880 136 -  91010382 AGTTGAGTCCTGTTCTGACGCGAGGCCTGGCGCCTGGAGAGCCTCATCCAGAACCGTCACGGAGT----------------------------------------------------------C-----------CTGGGTCCTCACTCCCCTCGGGAGCTGTGCGCTGGCC---------------------------TGCA-CTGGACAGAGCGGGAGACACCAGCCTCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      118889 137 -    438239 AGTTGAGTCCTGTTCTGACCTGAGGCCTGGCGCCTGGAGAGCCTTGTCCAGAACCGTCACGGAGT----------------------------------------------------------C-----------CTGGGTCCTCGCTCCCCTCGGGAGCTGTGCGCTGGCC---------------------------TGCACCTGGACAGAGCGGGAGACACCAGCCTCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      156996 137 -    514179 AGTTGAGTCCTGTTCTGACCTGAGGCCTGGCGCCTG----------------------------------------------------------GAGAGCCTTGTCCAGAACCGTCACGGAGTC-----------CTGGGTCCTCGCTCCCCTCGGGAGCTGTGCGCTGGCC---------------------------TGCACCTGGACAGAGTGGGAGACACCAACCTCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807248  40 + 204313951 -------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGTGCGCTGGCC---------------------------TGCACCTGGACAGAGAGAGAGG--------CCC-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967607  48 +  16417988 -------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGTGCGCTGGCC---------------------------TGCACCTGGACAGAGCCAGAGGCACCAGGCCCC-
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25372313  48 -  25620257 -------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGTGCGCTGGCC---------------------------TGCGCCTGGACAGAGCGAGAGGCACCAGGGCCC-
i aotNan1.NW_018503740v1   I 277 C 0
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47530 228 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=353984.000000
s hg38.chr5_KI270793v1_alt     24423 42 +    126136 CTGCCAGGAAGGCCCAGGG---TCCTCAGGGACCAAGACGCAGGA
s panTro5.chr5             181291814 42 - 181907262 CTGCCAGGAAGGCCCAGGG---TCCTCAGGGACCAAGACGCAGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012286 42 - 183735486 CTGCCAGGAAGGCCCAGGG---TCCTCAGGGACCAAGACGCAGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102742 42 +    698298 CTGCCAGGAAGGCCCAGGG---TCCTCAGGGACCAAGACGCAGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526432 42 - 121039945 CTGCCAGGAAGATCCAGGG---TCCTCAGGGACCAAGAGGCAGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480346 42 - 180051392 CTGCCAGGAAGGCCCAGGG---TGCTCAGGGACCAAGAGGCAGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211441 42 - 181584905 CTGCCAGGAAGGCCCAGGG---TGCTCAGGGACCAAGAGGCAGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206212 42 -   1764207 CTGCCAGGAAGGCCCAGGG---TGCTCAGGGACCAAGAGGCAGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220720 27 -  16742782 CGGCCAGGA------------------AGGGACCAAGAGGCAGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530016 42 -  91010382 CTGCCAGGAAGGCCCAGGG---TCCTCGGGGACCAAGAGGCAGGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119026 45 -    438239 CTGCCAGGAAGGCCCAGGGTCCTCCTCAGGGACCAAGAGGTAGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157133 42 -    514179 CTGCCAGGAAGGCCCAGGG---TCCTCAGGGACCAAGAGGCAGGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807288 42 + 204313951 CTGCCAGGAAGGCGCAGAG---TCCTCAGGGACCGAGAGGCAGTA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967655 29 +  16417988 CTGCCAGGAAGGCGCAGAG---TTCTCAGAG-------------G
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       47758 42 +    298490 CTGCCAGGAAGGCACAGAG---TCCTCAGGGACCGAGAGGCAGGA
i cebCap1.NW_016108158v1   I 228 I 38
s aotNan1.NW_018503740v1    25372361 42 -  25620257 CTGCCAGGAAGGCGCAGAG---TCCTCAGGGACCGAGAGGCAGGA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1848719 2305 -   2165740 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=241437.000000
s hg38.chr5_KI270793v1_alt     24465 34 +    126136 GACGGCCGCT-GCCAGGGTCCTCGGGACTTCTGTG
s panTro5.chr5             181291856 34 - 181907262 GACGGCCGCT-GCCAGGGTCCTCGGGACTTCTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012328 34 - 183735486 GACGGCCGCT-GCCAGGGTCCTCGGGACTTCTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102784 33 +    698298 CACGGCCGCT-CCCAGGGTCCTC-GGACTTCTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526474 34 - 121039945 CACGGCCGCT-TGCAGGGTCCTCGGGACATCTGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480388 34 - 180051392 CACGGCCGCT-CCCAGGGTCCTCGGGACGTCTGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211483 34 - 181584905 CACGGCCACT-CCCAGGGTCCTCGGGACGTCTGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206254 34 -   1764207 CACGGCCGCT-CCCAGGGTCCTCGGGACGTCTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220747 33 -  16742782 CATGGCTGCT-CCCGGGGTCCTCGGGACGTCTGT-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530058 33 -  91010382 CACCGCCGCT-CCCAGGGTCCTCGGGACGTCTGT-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119071 33 -    438239 CACGGCCGCT-CCCGGGGTCCTCGGGACGTCTGT-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157175 34 -    514179 CACGGCCGCT-CCCGGGGTCCTCGGGATGTCTGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807330 35 + 204313951 CACAGCCCCTCCCCGGGGTCCTCGGGATGTCTGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967684 35 +  16417988 CACGGCCCCTCCCCAGGGCCCTCGGGACGTCTGTG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25372403 35 -  25620257 CACAGCCCCTCCCCAGGGTCTTCGGGACCTCTGTG
i aotNan1.NW_018503740v1   C 0 I 31
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47800 38 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=76342.000000
s hg38.chr5_KI270793v1_alt     24499 23 +    126136 TGGCCTTCGCTACCGGAGCCCTG
s panTro5.chr5             181291890 23 - 181907262 TGGCCTTCGCTACCGGAGCCCCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012362 23 - 183735486 TGGCCTTCGCTACCGGAGCCCCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102817 23 +    698298 CGGCCTTCGCTACCGGAGCCCCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526508 23 - 121039945 CGGCCTTCGCTACCCGAGCCCCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480422 23 - 180051392 CGGCCTTCGCTACTTGAGCCCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211517 23 - 181584905 CGGCCTTCGCTACTTGAGCCCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206288 23 -   1764207 CGGCCTTTGCTACTTGAGCCCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220780  6 -  16742782 -----------------GCCCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530091  6 -  91010382 -----------------GCCCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119104  6 -    438239 -----------------GCCCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157209 23 -    514179 CGGCCTTCGCTACTTGAGCCGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807365 23 + 204313951 CAGCATTGGCTCCCCCAGCCCCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967719 22 +  16417988 AGGCATTGGCTCCCCCAG-CCCA
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25372438 31 -  25620257 I
e otoGar3.GL873745           1848719 2305 -   2165740 I
e cebCap1.NW_016108158v1       47800 38 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=177549.000000
s hg38.chr5_KI270793v1_alt     24522 31 +    126136 AGGCGCCATCCCCATG-TGCCCTTCGGGCTGG
s panTro5.chr5             181291913 31 - 181907262 AGGCACCATCCCCATG-TGCCCTTCGGGCTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012385 31 - 183735486 AGGCGCCATCCCCATG-TGCCCTTCGGGCTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102840 31 +    698298 AGGCGCCATCCCCATG-TGCCCTTCGGGCTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526531 31 - 121039945 AGGCGCCATCCTCATG-TGTCCTTCGGGCTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480445 31 - 180051392 AGGCGCCATCTCCATG-TGCCCTTCGGGCTGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211540 31 - 181584905 AGGCGCCATCTCCATG-TGCCCTTCGGGCTGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206311 31 -   1764207 AGGCGCCATCTCCATG-TGCCCTTCGGGCTGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220786 31 -  16742782 AGGCGCCATCCCCATG-TGCCCTTCGGGCTGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530097 31 -  91010382 AGGCGCTATCCCCGTG-TGCCCTTCGGGCTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119110 31 -    438239 AGGCGCCATCCCCATG-TGCCCTTCGGGCTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157232 31 -    514179 AGGCGCCATCCCCATG-TGCCCTTCGGGCTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807388  8 + 204313951 ATGTGCCA------------------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15967741  8 +  16417988 AGGCGCCA------------------------
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1851024 32 -   2165740 AGGTGCCACCCCGAGGCTGTCCTGCTGGGTAG
i otoGar3.GL873745         I 2305 C 0
e aotNan1.NW_018503740v1    25372438 31 -  25620257 I
e cebCap1.NW_016108158v1       47800 38 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=720165.000000
s hg38.chr5_KI270793v1_alt     24553 73 +    126136 TCCAGGAGGAGGCCCTG-CGGCGGCCACAGACTGGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
s panTro5.chr5             181291944 73 - 181907262 TCCAGGAGGAGGCCCTG-CGGCGGCCACAGACTGGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012416 73 - 183735486 TCCAGGAGGAGGCCCTG-CGGCGGCCACAGACTGGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102871 72 +    698298 TCCAGGAGGA-GCCCTG-TGGCGGCCACAGACTGGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTGGATTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526562 73 - 121039945 TCCAGGAGGAGGCCCTG-CGGCGGCCACAGACTTGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTCGTGGGTTTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480476 73 - 180051392 TCCAGGAGGAGGCCCTG-CGGCGGCCACAGACTTGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211571 73 - 181584905 TCCAGGAGGAGGCCCTG-CGGCGGCCACAGACTTGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206342 73 -   1764207 TCCAGGAGGAGGCCCTG-CGGCGGCCACAGACTTGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220817 67 -  16742782 TCCAGGAGGAGGCCCTG-CGGCAGCCACAGACTAGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTG------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530128 73 -  91010382 TCCAGGAGGAGGCCCTG-CCGCGGCCACAGACTTGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119141 73 -    438239 TCCAGGAGGAGGCCCTG-CGGCGGCCACAGACTAGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157263 73 -    514179 TCCAGGAGGAGGCCCTG-CGGCAGCCACAGACTTGGGG--------GACAAAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807396 71 + 204313951 TCCAGGAGGAAGCCGTG-CAGCAGCCACAGACT--GGG--------GACACAGA-----CCCAGGGACTCAGAACCTTGTGGGTTTT
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          15967749 71 +  16417988 TCCGGGAGGAAGCCTTG-CACCACCCACAGACT--GGG--------GACACAGC-----CCCAGGAACACAGAACCTTGTGGGTTTT
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       47838 71 +    298490 TCCAGGAGGAAGCCGTG-CAGCGGCCACAGACT--GGG--------GATCCAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
i cebCap1.NW_016108158v1   I 38 I 166
s aotNan1.NW_018503740v1    25372469 71 -  25620257 TCCAGGAGGAAGCCATG-TAGCGGCCACAGACT--GGG--------GACACAGC-----CCCAGGAACTCAGAACCTTGTGGGTTTT
i aotNan1.NW_018503740v1   I 31 I 161
s otoGar3.GL873745           1851056 87 -   2165740 TATGGAAGCAAGCCCTGCCATTGGGCCCAGACTGGGAGACACTCCAAACACAGCCAGAGCCCTAAAGTTTGGGATTGCTTGGATTTT
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11690417 994 +  42124431 I

a score=807846.000000
s hg38.chr5_KI270793v1_alt     24626 141 +    126136 -GGAAGAGGAGC-------------CGCGCAGCAAGGTCCCGACGCCTGCAGGGAGCTGAACGGGGAGCCGCGCGAGGAAGGGAG----------TGCAGCAGACCC----------------------AGTACGCAA--------------------------ATGCTGACC------CTACAAAACGCACCGCGGGTTCTC-GAGCCGTGGGGATCCC
s panTro5.chr5             181292017 141 - 181907262 -GGAAGAGGAGC-------------CGTGCAGCACGGTCCCGACGCCTGCAGGGAGCTGAAGGGGGAGCCGCGCGAGGAAGGGAG----------CGCAGCAGACCC----------------------AGTACACAA--------------------------ATGCTGACC------CTACAAAACGCACCGCGGGTTCTC-GAGCCGTGGGGATCGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012489 141 - 183735486 -GGAAGAGGAGC-------------CGTGCAGCACGGTCCCGACGCCTGCAGGGAGCTGAAGGGGGAGCCGCGCGAGGAAGGGAG----------CGCAGCAGACCC----------------------AGTACACAA--------------------------ATGCTGACC------CTACAAAACGCACCGCGGGTTCTC-GAGCCGTGGGGATCGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      102943 141 +    698298 -GGAAGAGGAGC-------------CGTGCAGCACGGTCCCGACGCCTGCAGGGAGCTGAACGGGGAGCCGCGCGAGGAAGGGAG----------CGCAGCAGACCC----------------------AGTACGCAA--------------------------ATGCTGACC------CTACAAAATGCACGGTGGGTTCTC-GAGCAGTGGGGATCGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526635 131 - 121039945 -GGAAAAGGAGC-------------CGTGCAGCAAGGTCCCAACGCCTGCAGGGAGCTGAACGGGGAGCCGCGCGAGGAAGG--------------------GACCC----------------------AGTACCCAA--------------------------ATACTGACC------CTACGAAACGCACCGCGGGTTCTC-CAGCCGTGGGGATCGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480549 142 - 180051392 -GGAAGAGGAGC-------------CATGCAGCAAGGTCTTGACGCCTGCAAGGAGCTGAATGGGGAGCTGCGCTAGGAAGGGAG----------CGCAGCAGACCC----------------------AGTACTCAA--------------------------ATGCTGATG------CTACAAAACACACCACGGGTTCTCCGAGCCGTAGGGATCGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211644 142 - 181584905 -GGAAGAGGAGC-------------CATGCAGCAAGGTCTTGACGCCTGCAAGGAGCTGAATGGGGAGCTGCGCTAGGAAGGGAG----------CGCAGCAGACCC----------------------AGTACTCAA--------------------------ATGCTGATG------CTACAAAACACACTACGGGTTCTCCGAGCCGTAGGGATCGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206415 142 -   1764207 -GGAAGAGGAGC-------------CATGCAGCAAGGTCTTGACGCCTGCAAGGAGCTGAATGGGGAGCTGCGCTAGGAAGGGAG----------CGCAGCAGACCC----------------------AGTACTCAA--------------------------ATGCTGATG------CTACAAAACACACCACGGGTTCTCCGAGCCGTAGGGATCGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      220884 127 -  16742782 ----------------------------GCAGCAAGGTCTCGACGCCTGCAAGGAGCTGAATGGGG-GCCGCGCTAGGAAGGGAG----------CGCAGCAGACCC----------------------AGTACTCAA--------------------------ATGCTGATG------CTACAAAACGCACCACAGGTTCTCCGAGCCGTGGGGATCGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530201 142 -  91010382 -GGAAGAGGAGC-------------CATGCAGCAAGGTCTCGACGCCTGCAAGGAGCTGAATGGGGAGCCGTGCTAGGAAGGGAG----------CGCAGCAGACCC----------------------AGTACTCAA--------------------------ATGCTGACG------CTACAGAACGCACCAGGGGTTCTCTGAGCCGTGAGGATCGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119214 142 -    438239 -GGAAGAGGAGC-------------CACGCAGCAAGGTCTCGACGCCTGCAAAGAGCTGAATGAGGAGCTGCGCTAGGAAGGGAG----------CGCAGCAGACCC----------------------AGTACTCAA--------------------------ATGCTGATG------CTACAAAACACACCACAGGTTCTCCGAGCCGTGGGGATCGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157336 142 -    514179 -GGAAGAGGAGC-------------CATGCAGCAAGGTCTCGACGCCTGCAAAGAGCTGAATGAGGAGCTGTGCTAGGAAGGGAG----------CGCAGCACACCC----------------------AGCACTCAA--------------------------ATGCTGATG------CTACAAAACGCACCACGAGTTCTCCGAGCCATGGGGATCGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807468 153 + 204313951 -GGAGATGCAG---------------AAGCAGCAAGATCCCAATGCCTGCA------------GGGAGCTGTGCTAGGAAGGG-A----------CTCTGCAGGCCT----------------------GGCACCCAAAGCTGGCACAGGTTATTTGTCCCCACATGCTGACA-----CCTATGAAACACCCTGCGGGTTCTCAGAGCCCTGTGGATCG-
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          15967821 165 +  16417988 -GGAGACGCAG---------------AAGCAGCAAAGCCCCAATGCCTGCAGGGAGCTGTGTGGGGAGCTGTGCTAGGAAGGG-G----------CATGGCAGACCC----------------------GGCACCCAAAGCTGGCGCAGGCCATTCGTCCCCACATGCCAATG-----CCTGGGAAACACCCTGAGGGGTCTCAGAGCCCTGTGGATCG-
i saiBol1.JH378155         I 1 C 0
s otoGar3.GL873745           1851143 193 -   2165740 AGGAAAGGCAGCATGCATTTGTCCACACTCAGCAAGGTCTGGATGACTACAGGGAAATGGATGGAGACCCTCAGCAAGAAGGCAGTGGTTAGGCACACTCCACACCCTCTGTGCCAGGTCAGGCCGTCAGGTCCCCAG--------------------------ACCCTGACAGCAAACCTGCAGATCACGCC-CTGGCCTTCAGAGCCCTGTAGGCCAA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25372540 161 -  25620257 I
e cebCap1.NW_016108158v1       47909 166 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=335748.000000
s hg38.chr5_KI270793v1_alt     24767 35 +    126136 GGCGGTGCTCTCCAGAGACCGCAGCTGCAGGAGCT---------
s panTro5.chr5             181292158 35 - 181907262 GGCGGTGCTCTCCAGAGACCGCAGCTGCAGGAGCT---------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012630 35 - 183735486 GGCGGTGCTCTCCAGAGACCGCAGCTGCAGGAGCT---------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      103084 35 +    698298 GGCGGTGCTCTCCAGAGACCGCAGCTGCAGGAGCT---------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526766 35 - 121039945 CGCGGTGCTCTCCAGAGACCGCAGCTGCAGGAGCT---------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480691 35 - 180051392 GGCAGTGCTCTCCACAGACCGGAGCTGCAGGAGCT---------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211786 35 - 181584905 GGCAGTGCTCTCCACAGACCGGAGCTGCAGGAGCT---------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206557 35 -   1764207 GGCAGTGCTCTCCACAGACGGGAGCTGCAGGAGCT---------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221011 35 -  16742782 GGCAGTGCTCTCCACAGACCGGAGCTGCAGGAGCT---------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530343 35 -  91010382 GGCAGTGCTCTTCACAGACCGGAGCTGCAGGAGCT---------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119356 35 -    438239 GGCAGTGCTCTCCACAGACCGGAGCTGCAGGAGCT---------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157478 35 -    514179 GGCAGTGCTCTCCACAGACTGGAGCTGCAGGAGCT---------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807621 35 + 204313951 GGCAGTGCTCTCCAGAGACAGGAGCTGCAGGAGCT---------
i calJac3.chr2             C 0 I 13
s saiBol1.JH378155          15967986 35 +  16417988 GGCAGTGCTCTCCAGAGACAGGAGCTGCAGGCGCT---------
i saiBol1.JH378155         C 0 I 13
s cebCap1.NW_016108158v1       48075 35 +    298490 GGCAGTGCTCTCCAGAGACAGGAGCTGCAGGAGCT---------
i cebCap1.NW_016108158v1   I 166 I 42
s aotNan1.NW_018503740v1    25372701 35 -  25620257 GGCAGTGCTCTCCAGAGACAGGAGCTGCAGGAGCT---------
i aotNan1.NW_018503740v1   I 161 I 42
s otoGar3.GL873745           1851336 30 -   2165740 ---GGAGATCT-----------GGCTGCCTGGAATATGTATATT
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11690417 994 +  42124431 I

a score=190709.000000
s hg38.chr5_KI270793v1_alt     24802 30 +    126136 GGGCG---------------GTCCCCGGCAGGTGCCACGAGGGTG
s panTro5.chr5             181292193 30 - 181907262 GGGCG---------------GTCCCCGGCAGGTGCCACGAGGGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012665 30 - 183735486 GGGCG---------------GTCCCCGGCAGGTGCCACGAGGGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      103119 30 +    698298 GGGCG---------------GTCCCCGGCAGGTGCCACGAGGGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526801 45 - 121039945 GGGCGGTGGCCAGCAGGCATGTCCCTGGCAGGCGCCGCGAGGGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480726 45 - 180051392 CGGTGGTGGCCAGCAGGCATGTCCCCGGCAGGTGCCGCGAGGGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211821 45 - 181584905 CGGTGGTGGCCAGCAGGCATGTCCCCGGCAGGTGCCGCGAGGGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206592 45 -   1764207 CGGTGGTGGCCAGCAGGCATGTCCCCGGCAGGTGCCGCGAGGGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221046 45 -  16742782 CGGTGGTGGCCAGCAGGCATGTCCCCGGCAGGTGCTGCGAGGGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530378 45 -  91010382 CGGTGGTGGCCAGCAGGCATGTCCCCAGCAGGTGCCGCGAGGGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119391 45 -    438239 TGGTGGTGGCCAGCAGGCATGTCCCCGGCAGGTGCTGCGAGGGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157513 45 -    514179 CGGTGGTGGCCAGCAGGCATGTCCCCGGCAGGTGCCGCGAGGGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807669 29 + 204313951 --------------AGGCAGGTCCC-GGCAGACACCCC-AGGGCA
i calJac3.chr2             I 13 C 0
s saiBol1.JH378155          15968034 29 +  16417988 --------------AGGCAGGTCCC-GGCAGGCATCCC-AGGGCA
i saiBol1.JH378155         I 13 C 0
s otoGar3.GL873745           1851366 24 -   2165740 ---------------------TCCACCATAGGCACAGCAGGGACG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25372736 42 -  25620257 I
e cebCap1.NW_016108158v1       48110 42 +    298490 I
e canFam3.chr34             11690417 994 +  42124431 I

a score=150706.000000
s hg38.chr5_KI270793v1_alt     24832 32 +    126136 CGATCTCGGCCGAGAACCACCAGGCGTC-CAC-G
s panTro5.chr5             181292223 32 - 181907262 CGATCTCGGCCGAGAACCACCAGGCGTC-CAC-G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012695 32 - 183735486 CGATCTCGGCCGAGAACCACCAGGCGTC-CAC-G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      103149 32 +    698298 CGATCTCGTCCGAGAACCACCAGGCGTC-CAC-G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526846 25 - 121039945 CGATCTCGGCCGAGAACCACAGG--------C-G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480771 24 - 180051392 CCATCTCAGCCGAGAACCACCAGG----------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211866 24 - 181584905 CCATCTCAGCCGAGAACCACCAGG----------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206637 24 -   1764207 CCATCTCAGCCGAGAACCACCAGG----------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221091 24 -  16742782 CCATCTCAGCCGAGAACCACCAGG----------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530423 24 -  91010382 CCATCTTAGCCGAGAACCACCAGG----------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119436 24 -    438239 CCATCTCAGCTGAGAACCACCAGG----------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157558 24 -    514179 CCATCTCAGCCGAGAACCACCAGG----------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807698 31 + 204313951 CGATCTCGGCTGAGAACCACCAGGTGTC-CAC--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15968063 31 +  16417988 CGATCTCGGCGGAGAACCACCAGGTGTC-CAC--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       48152 31 +    298490 CGATCTCGGCTGAGAACCCCCAGGTGTC-CAC--
i cebCap1.NW_016108158v1   I 42 C 0
s aotNan1.NW_018503740v1    25372778 32 -  25620257 CGATCTTGGCTGAGAACCACCAGGTGTC-CACG-
i aotNan1.NW_018503740v1   I 42 I 9
s otoGar3.GL873745           1851390 31 -   2165740 CCATCTCTG-TGATGGCCTCCAGGGCTCTCAG--
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11690417 994 +  42124431 I

a score=30180.000000
s hg38.chr5_KI270793v1_alt     24864 18 +    126136 TCCACGGAGGGACTCATT
s panTro5.chr5             181292255 18 - 181907262 TCCACGGAGGGACTCATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012727 18 - 183735486 TCCACGGAGGGACTCATT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      103181 18 +    698298 TCCACGGAGGGACTCATT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526871 18 - 121039945 TCCACGGAGGGACTCATT
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203807729 12 + 204313951 ------GAGGGGCTCGCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15968094 12 +  16417988 ------GAGGGGCTCGCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       48183 12 +    298490 ------GAGGGGCTCCCT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1851421 12 -   2165740 ------GACAGGGCCATT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25372810  9 -  25620257 I
e canFam3.chr34             11690417 994 +  42124431 I
e manLeu1.NW_012110441v1      119460  0 -    438239 C
e chlSab2.chr4              90530447  0 -  91010382 C
e cerAty1.NW_012009470v1      221115  0 -  16742782 C
e colAng1.NW_012118799v1      157582  0 -    514179 C
e macNem1.NW_012012389v1      206661  0 -   1764207 C
e macFas5.chr6             181211890  0 - 181584905 C
e rheMac8.chr6             179480795  0 - 180051392 C

a score=1356587.000000
s hg38.chr5_KI270793v1_alt     24882 145 +    126136 CTCCGTGCCCATCTCACAGGGAGCAAAGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGACCCTTCTCTTCTGCAGGGTGGAGTCCTCCTCCCAGAGAAGCCCAGACGTTCGTTTGGGAGACCCAGGGACACTCGG
s panTro5.chr5             181292273 145 - 181907262 CTCCGTGCCCATCTCACAGGGAGCAAAGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGACCCTTCTCTTCTGCAGGGTGGAGTCCTCCTCCCAGAGAAGCCCAGACGTTCGTTTGGGAGACCCAGGGACACTCGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012745 145 - 183735486 CTCCGTGCCCATCTCACAGGGAGCAAAGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGACCCTTCTCTTCTGCAGGGTGGAGTCCTCCTCCCAGAGAAGCCCAGACGTTCGTTTGGGAGACCCAGGGACACTCGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      103199 145 +    698298 CTCCGTGCCCATCTCACGGGGAGCAAAGGAGGCGGAGGG--AGCCTCGGACTCACTG--GGTTCTGACCCAGACCCTTCTCTTCTGCAGGGTGGAGTCCTCCTCCCAAAGAAGCCCAGACGTTCGTTTGGGAGACCCAGGGACACTCCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120526889 145 - 121039945 CTCCGTGCCCATCTCACAGGGAGCGAAGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGACCCTTCTCTTCTGCAGGGTGGAGTCCTCCTCCCAGGGAAGCCCAGGCGTGCGTTTAGGAGACCCAGGGACACTCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480795 145 - 180051392 CTCCGTGCCCATCTCACAGGGAGTGAAGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGACCCTTCTTTTCTGCAGGGCGGAGTCTTCCTCCAAGAGAAGCCCAGGCCTGCGTTTGGGAGACCCAGGGACACCCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181211890 145 - 181584905 CTCCGTGCCCATCTCACAGGGAGTGAAGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGACCCTTCTTTTCTGCAGGGCGGAGTCTTCCTCCAAGAGAAGCCCAGGCCTGCGTTTGGGAGACCCAGGGACACCCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206661 145 -   1764207 CTCCGTGCCCATCTCACAGGGAGTGAAGGAGGCGGAGGG--AGCCCCAGACTCACTG--GGTTCTGACCCAGACCCTTCTTTTCTGCAGGGCGGAGTCTTCCTCCAAGAGAAGCCCAGGCCTGCGTTTGGGAGACCCAGGGACACCCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221115 145 -  16742782 CTCCGTGCCCATCTCACAGGGAGTGAAGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGACCCTTCTTTTCTGCAGGGTGGAGTCCTCCTCCAAGAGAAGCCCAGGCCTGCGTTTGGGAGACCCAGGGACACCCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530447 145 -  91010382 CTCCATGCCCATCTCACAGGGAGTGAAGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGACCCTTCTTTTCTGCAGGGTGGAGTCCTCCTCCAAGAGAAGCCCAGGCCTGCGTTTGGGAGACCTAGGGACACCCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119460 145 -    438239 CTCCGTGCCTATCTCACAGGGAGTGAAGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGACCCTTCTTTTCTGCAGGGTGGAGTCCTCCTCCAAGAGAAGCCCAGGCCTGCGTTTGGGAGACCCAGGGACACCCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157582 145 -    514179 CTCTGTGCCCATCTCACAGGGAGTGAAGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGACCCTTCTTTTCTGCAGGGTGGAATCCTCCTCCAAGAGAATCCCAGGCCTGCGTTTGGGAGACCCAGGGACACCCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807741 143 + 204313951 CTCTGTGTCCAACTCACAGGGAGTGGGGGACGCAAAGGG--GG-CCCGGACTCACTG--GATTCTGACCCAGATGCTTCTTTTCTGCAGGGCAGAGGCCTCCTCCCAGAGA-ACCCAGGCCTGCCTGTGGGAGACCTGGGGCCGCCCAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15968106 111 +  16417988 CTC--TGTCCATCTCACAGGGAGTGGGGGAGGCAGAGGG--AGCCCCGGACTCACTG--GGCTCTGACCCAGATGCTTCTCTTCTGCAGGGCAGAGGCCTCCTCCCAGAGA--------------------------------GCCCAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       48195 144 +    298490 CTCTGTGTCCATCTCACAGGGAGTGGGGGAGGCGGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGATGCTTCTCTTCTGCAGGGCAGAGGCCTTCTCCCAGAGA-GCCCAGGCCTGCCTGTGGGAGACCTGGGGCCGCCCAG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25372819 144 -  25620257 CTCTGTGTCCATCTCACAAGGAGTGGGGGAGGCAGAGGG--AGCCCCGGACTCACTG--GGTTCTGACCCAGATGCTTCTCTTCTGCAGGGCAGAGGCCTCCTCCCAGAGA-GCCCCGGCCTGCCTGTGGGAGACCCAGGGCCGCACAG
i aotNan1.NW_018503740v1   I 9 C 0
s otoGar3.GL873745           1851433 124 -   2165740 --------CTCTCATGCTGGGGTTTGAGGGGCCGGGTGGCTGGCTTCAGAGTCACTTTCAGCTCTGGCCCAGGTGCCACAGCTC--CAGTGTGGGGACCACCTCCTCAAGGGACTCAAG---------------GCCATGTCCTCACAG
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11690417 994 +  42124431 I

a score=584527.000000
s hg38.chr5_KI270793v1_alt     25027 69 +    126136 GGCCATCACCTGCCCCT--------CACTGGGGCTCCCAGGGGAGACTTCACGCAGTGCCCAGTGTCCTCCCGCTG-G
s panTro5.chr5             181292418 69 - 181907262 GGCCATCACCTGCCCCT--------CTCTGGGGCTCCCAGGGGAGACTTCACGCAGTGCCCAGTGTCCTCCCGCTG-G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012890 69 - 183735486 GGCCATCACCTGCCCCT--------CTCTGGGGCTCCCAGGGGAGACTTCACGCAGTGCCCAGTGTCCTCCCGCTG-G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      103344 69 +    698298 GGCCATCGCCTGCCCCT--------CTTTGGGGCTCCCAGGGGAGACTTCACGCAGTGCCCAGTGTCCTCCCGCTG-G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120527034 65 - 121039945 GGCCATCACCTGCCCCT--------CTCTGGGGCTCCCAG----AACTTCACACAGTGCCCAGTGTCCTCCCGCTG-G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179480940 69 - 180051392 GGCCGTCGCCTGCCCCT--------CTCTGGGGCTCCCAGGGGAGACTTCACGCAGTGCCCAGCGTCCTCCCGCTG-G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181212035 69 - 181584905 GGCCGTCGCCTGCCCCT--------CTCTGGGGCTCCCAGGGGAGACTTCACGCAGTGCCCAGCGTCCTCCCGCTG-G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206806 69 -   1764207 GGCCGTCGCCTGCCCCT--------CTCTGGGGCTCCCAGGGGAGACTTCACGCAGTGCCCAGTGTCCGCCCGCTG-G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221260 69 -  16742782 GGCCGTCGCCTGCCCCT--------CTCTGGGGCTCCCAGGGGAGACTTCACGCAGTGCCCGGTGTCCTCCCGCTG-G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530592 63 -  91010382 GGCCGTCG------TCT--------CTCTGGGGCTCCCAGGGGAGACTTCACGCAGTGCCCAGTGTCCTCCCGCTG-G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119605 69 -    438239 GGCCGTCGCCTGCCCCT--------CTCTGGGGCTCCCAGGGGAGACTTCACGCAGTGCCCAGTGTCCTCCCGCTG-G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157727 69 -    514179 GGCTGTTGCCTGCTCCT--------CTCTGGGGCTTCCAGGGGAGAGTTCACGCAGTGCCCAGTGTCCTCTCACTG-G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807884 68 + 204313951 AGCCACCGCCTGCCCGT--------CTCTGGGGCTCCCAGTGGAGATGCCATGCAGAGCCCCGTGTCCTCCCACTG--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15968217 67 +  16417988 AGCCACTGCCTGCCCGT--------CTCTGGGGCTCCCAGTGGAGATGCCATGCAG-TCCCAGTGTCCTCCCACTG--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       48339 68 +    298490 AGCCGACACCTGCCCAT--------CTCTGGGGCTCCCAGTGGAGATGCCATGCAGTGCCCAGTGTCCTCCCACTG--
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25372963 69 -  25620257 AGCCACCGCCTGCCCGT--------CTCTGGGGCTCCCAGTGGAGATGCCATGCGGTGCCCAGTGTCCTCCCACTGG-
i aotNan1.NW_018503740v1   C 0 I 32
s otoGar3.GL873745           1851557 54 -   2165740 AGCTGG-GCCTGC------------------AGCTCCCAG---AGCTTACTTGCACTGCACTGGACTTTCCCACCT--
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11691411 64 +  42124431 ggccaCTGCCAGCCCCTAAACACGCCTGTGTGCCCCTGCAGAGAGACCTC----------CAGGGTCTTGTTGG----
i canFam3.chr34            I 994 C 0

a score=251580.000000
s hg38.chr5_KI270793v1_alt     25096 35 +    126136 GATCCTCCTGCCCCCGAGGGGCGCCCGTGTCCCCC
s panTro5.chr5             181292487 35 - 181907262 GATCCTCCTGCCCCCGAGGGGCGCCCGTGTCCCGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012959 35 - 183735486 GATCCTCCTGCCCCCGAGGGGCGCCCGTGTCCCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      103413 35 +    698298 GATCCTCCTGCCCCCGAGGGGCGCCCGTGTCCCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120527099 35 - 121039945 GATCCTCCTGCCCGCGAGGGGCGTCCGTGTCCCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179481009 35 - 180051392 GATCTTCTTGCCCCTGAGGGGCGTCCATGTCCCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181212104 35 - 181584905 GATCTTCTTGCCCCTGAGGGGCGTCCATGTCCCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206875 35 -   1764207 GATCTTCTTGCCCCTGAGGGGCGTCCATGTCCCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221329 35 -  16742782 GATCTTCTTGCCCCTGAGGGGCGTCCATGTCCCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530655 35 -  91010382 GATCTTCTTGCCCCTGAGGGGTGTCCATGTCTCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119674 35 -    438239 GATCTTCTTGCCCCTGAGGGGCGTCCATGTCCCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157796 35 -    514179 GATCTTCTTGCCCCTGAGGGGCGTCCATGTCCCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807952 33 + 204313951 GACCCTCCAGCCCCCGA-GGGCATCTGCGTCCCC-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15968284 33 +  16417988 GACCCTCCAGCGCCCGA-GGGTGTCTGCGTCCCC-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       48407 33 +    298490 GACCCTCCAGCCCCCGT-GGGTGTCCGCATCCCC-
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1851611 33 -   2165740 --CCCTCTAGCACCCCATGGGTATACATGTCTCTC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11691475 23 +  42124431 GCCCCCTCTGGACTCTAAGGGCA------------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25373032 32 -  25620257 I

a score=5308494.000000
s hg38.chr5_KI270793v1_alt     25131 528 +    126136  
s panTro5.chr5             181292522 616 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183012994 528 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      103448 529 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120527134 529 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179481044 525 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181212139 525 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      206910 525 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221364 525 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90530690 525 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      119709 525 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      157831 525 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203807985 535 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15968317 534 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       48440 527 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25373064 537 -  25620257  
i aotNan1.NW_018503740v1   I 32 I 68
s otoGar3.GL873745           1851644 493 -   2165740  
i otoGar3.GL873745         C 0 I 3
s canFam3.chr34             11691498 473 +  42124431  
i canFam3.chr34            C 0 C 0

a score=180349.000000
s hg38.chr5_KI270793v1_alt     25659 23 +    126136 TGCAGTTCCACCACACCCTCCAG
s panTro5.chr5             181293138 23 - 181907262 TGCAGTTCCACCACACCCTCCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183013522 23 - 183735486 TGCAGTTCCACCACACCCTCCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      103977 23 +    698298 TGCAGTTCCACCACACCCTCCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120527663 23 - 121039945 TGCAGTTCCACCACACCCTCCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179481569 23 - 180051392 TGCAGTTCCACCACACCCGCCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181212664 23 - 181584905 TGCAGTTCCACCACACCCGCCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      207435 23 -   1764207 TGCAGTTCCACCACACCCGCCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221889 23 -  16742782 TGCAGTTCCACCACACCCGCCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90531215 23 -  91010382 TGCAGTTCCACCACACCCGCCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      120234 23 -    438239 TGCAGTTCCACCACACCCGCCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      158356 23 -    514179 CGCAGTTCCCCCACACCCGCCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203808520 23 + 204313951 TGAGGTCCCACCACACCCACCAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15968851 23 +  16417988 GGAGGTCCTGCCACACCGGCCAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       48967 21 +    298490 --AGGTCCCGCCACACCCGCCAG
i cebCap1.NW_016108158v1   C 0 I 46
s otoGar3.GL873745           1852140 23 -   2165740 GACATCTCTGGAACACAGCCCGG
i otoGar3.GL873745         I 3 I 1
s canFam3.chr34             11691971  8 +  42124431 ---------------TGCCCTGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25373601 68 -  25620257 I

a score=375604.000000
s hg38.chr5_KI270793v1_alt     25682 45 +    126136 CCCCCTCCCAGGCAATCTC--CCCACTCCA--------------GCCCCTGACCCCTGACC
s panTro5.chr5             181293161 59 - 181907262 CCCCCTCCCAGGCAATCTC--CCCGCTCCAGCATCTCAGCCTTGGCCCCTGACCCCTGACC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183013545 59 - 183735486 CCCCCTCCCAGGCAATCTC--CCCGCTCCAGCATCTCAGCCTCGGCCCCTGACCCCTGACC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      104000 59 +    698298 CCCCCTCCCAGGCAATCTC--CCCGCTCCAGCATCTCAGCCTCGGCCCCTGACCCCTGACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120527686 59 - 121039945 CCCCCTCCCAGGCAATCTC--CCCGCTCCAGCATCTCAGCCTCGGCCCCTGACCCCTGACC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179481592 59 - 180051392 CCCCCGCCCAGGCAATCTC--CCTGCTCTAGCATCTCAGCCTCAGCCTCTGATCCCTGACC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181212687 59 - 181584905 CCCCCACCCAGGCAATCTC--CCTGCTCTAGCATCTCAGCCTCAGCCTCTGATCCCTGACC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      207458 59 -   1764207 CCCCCGCCCAGGCAATCTC--CCTGCTCTAGCATCTCAGCCTCAGCCTCTGATCCCTGACC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221912 59 -  16742782 CCCCCGCCCAGGCAATCTC--CCTGCTCTAGCATCTCAGCCTCAGCCTCTGATCCCTGACC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90531238 59 -  91010382 CCCCCGCCCAGGCAATCTC--TCTGCTCTAGCATCTCAGCCTCAGCCTCTGATCCCTGACC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      120257 59 -    438239 CCCCTGCCCAGGCAATCTC--CCTGCTCTAGCATCTCAGCCTCAGCCTCTGATCCCTGACC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      158379 59 -    514179 CCCCCGCCCAGGCAATCTC--CCTGCTCTAGCATCTCAGCCTCAGCCTCTGATCCCTGACC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203808543 46 + 204313951 -CCCTTCCCAGGCACTCTC--CCTGCACCAGTGTCTCAGCTTCAGCCTC------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15968874 46 +  16417988 -CCCCTCCCAGGCCCTCTC--CCCGCACCAGTATCTCAGCCTCAGCCTC------------
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1852164 50 -   2165740 CCACCCTCCAGCTTACCCT--CC--CTCCAGATGCCAACCCTGTACCCCTCACC-------
i otoGar3.GL873745         I 1 I 1141
s canFam3.chr34             11691979 48 +  42124431 CCACTCCTCCTGCAACTCCAGCCTGCCCCAGCCAGCCAGCCCTGACTC-------------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25373601 68 -  25620257 I
e cebCap1.NW_016108158v1       48988 46 +    298490 I

a score=69637.000000
s hg38.chr5_KI270793v1_alt     25727 11 +    126136 ACCTTGCTCCT
s panTro5.chr5             181293220 11 - 181907262 ACCTTGCTCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183013604 11 - 183735486 ACCTTGCTCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      104059 11 +    698298 ACCTTGCTCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120527745 11 - 121039945 ACCTCGCTCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179481651 11 - 180051392 GCCTTGCTCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181212746 11 - 181584905 GCCTTGCTCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      207517 11 -   1764207 ACCTTGCTCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221971 11 -  16742782 GCCTTGCTCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90531297 11 -  91010382 GCCTTGCTCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      120316 11 -    438239 GCCTTGCTCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      158438 11 -    514179 GCCTTGCTCCC
i colAng1.NW_012118799v1   C 0 C 0
s canFam3.chr34             11692027 11 +  42124431 ACCTTGCTTCC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25373601 68 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       48988 46 +    298490 I
e saiBol1.JH378155          15968920  0 +  16417988 C
e calJac3.chr2             203808589  0 + 204313951 C

a score=71905.000000
s hg38.chr5_KI270793v1_alt     25738 7 +    126136 TGGTATC
s panTro5.chr5             181293231 7 - 181907262 TGGTATC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183013615 7 - 183735486 TGGTATC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      104070 7 +    698298 TGGTATC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120527756 7 - 121039945 TGGTATC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179481662 7 - 180051392 TGGTATC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181212757 7 - 181584905 TGGTATC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      207528 7 -   1764207 TGGTATC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221982 7 -  16742782 TGGTATC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90531308 7 -  91010382 TGGTATC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      120327 7 -    438239 TGGTATC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      158449 7 -    514179 TGGTATC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203808589 7 + 204313951 TGGCACC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15968920 7 +  16417988 TGACACC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       49034 7 +    298490 TGGCACC
i cebCap1.NW_016108158v1   I 46 C 0
s aotNan1.NW_018503740v1    25373669 7 -  25620257 TGGCACC
i aotNan1.NW_018503740v1   I 68 C 0
s canFam3.chr34             11692038 7 +  42124431 TGACACC
i canFam3.chr34            C 0 I 9149
e otoGar3.GL873745           1852214 1141 -   2165740 I

a score=2414809.000000
s hg38.chr5_KI270793v1_alt     25745 260 +    126136 CAGAGCCAGGCCGGAACTCAGGGAGGGCCGCGCCGTTCACTTCTGTAAGGGAGCCTCCGTTCAGTCAGTCATTCAACAAACATGAATCCAGAGCCGCATGCACTGCTGGTCCCGTCCCAGCTGCTGGTCACGGAGCGGAGAAAGCTTGAAGGCCGTGGTGTCTACTGA--GAGGCAGATGACAAACCAGGAGCACGAGTCACAGCACACACTGGCGCAGCTGCAGGGAGCTGGGCAGAGCCGGGCCTGGCACATGGGGCAGG
s panTro5.chr5             181293238 261 - 181907262 CAGAGCGAGGCCGGAACTCAGGGAGGGCTGCACCGTTCACTTCTGTAAGGGAGCCTCCGTTCAGTCAGTCATTCAACAAACATGAATCCAGAGCCGCATGCACTGCTGGTCCCATCCCAGCTGCTGGTCACGGAGCGGAGAAAGCTTGAAGGCCGTGGTGTCTACTGA-GGGGGCAGATGACAAACCAGGAGCACGAGTCACAGCACACACTGGCACAGCTGCAGGGAGCTGGGCAGAGCCGGGCCTGGCATATGGGGCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183013622 261 - 183735486 CAGAGCGAGGCCGGAACTCAGGGAGGGCTGCACCGTTCACTTCTGTAAGGGAGCCTCCGTTCAGTCAGTCATTCAACAAACATGAATCCAGAGCCGCATGCACTGCTGGTCCCATCCCAGCTGCTGGTCACGGAGCGGAGAAAGCTTGAAGGCCGTGGTGTCTACTGA-GGGGGCAGATGACAAACCAGGAGCACGAGTCACAGCACACACTGGCACAGCTGCAGGGAGCTGGGCAGAGCTGGGCCTGGCATATGGGGCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      104077 261 +    698298 CAGAGCGAGGCCGGAACTCAGGGAGGGCTGCACCGTTCACTTCTGTAAGGGAGCCTCCGTTCAGTCAGTCATTCAACAAACATGAATCCAGAGCCGCATGCCATGCTGGTCCCATCCCAGCTGCTGGTCACGGAGCGGAGAAAGCTTGAAGGCCGTGCTCTCTACTGA-GGAGGCAGATGACAAACCAGGAGCATAAGTCACAGCACACACTGGCACAGCTGCAGGGAGTTGGGCAGAGCCGGGTCTGGCACATGGGGCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120527763 262 - 121039945 CAGAGCGAGGCCGGGACTCAGGGAGGGCTGCACCGTTCACTTCTGTAAGGGAGCCTCCATTCAGtcagtcattcaacaaacatgaatccagagccgcatgcactgctggtcccatcccaggtgctggtcatggagcagagaaAGTTTGAAGGCCGTGGTGTCTACTGAGGGGGGCAGATGACAAACCAGGAGCACGAGTCACAGCACACACTGGCGCAGCTGCAGGGAGCTGGGCAGAGCCGGACCTGGCACATGGGGCAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179481669 261 - 180051392 CAGAGCGAGGCCGGGACTCAGGGAGGGCCACGCCGATCACTTCTGTAAGGGAGGCTCTGTTCAGTCAGTCCTTCAACAAGCATGAATCCAGAGCCACAGGCACTGCTGGTCCCATCCCAGGTGCTGGTCACGGAGTGGAGAAAGCTTGAGGGCCATGGTGTCTACTGA-GGGGGCAGATGACAAACCAGGAGCATGAGTCACAGCACACACTGGTGCAGCTGCAGGGAACTGGGCAGAGCCTGGCCAGGCACATGGGGCAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181212764 261 - 181584905 CAGAGCGAGGCCGGGACTCAGGGAGGGCCACGCCGATCACTTCTGTAAGGGAGGCTCTGTTCAGTCAGTCCTTCAACAAGCATGAATCCAGAGCCACAGGCACTGCTGGTCCCATCCCAGGTGCTGGTCACGGAGTGGAGAAAGCTTGAGGGCCATGGTGTCTACTGA-GGGGGCAGATGACAAACCAGGAGCATGAGTCACAGCACACACTGGTGCAGCTGCAGGGAACTGGGCAGAGCCTGGCCAGGCACATGGGGCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      207535 261 -   1764207 CAGAGCGAGGCCGGGACTCAGGGAGGGCCACGCCGATCACTTCTGTAAGGGAGGCTCTGTTCAGTCAGTCCTTCAACAAGCATGAATCCAGAGCCACAGGCACTGCTGGTCCCATCCCAGGTGCTGGTCACGGAGTGGAGAAAGCTTGAGGGCCATGGTGTCTACTGA-GGGGGCAGATGACAAACCAGGAGCATGAGTCACAGCACACACTGGTGCAGCTGCAGGGAACTGGGCAGAGCCTGGCCAGGCACATGGGGCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      221989 261 -  16742782 CAGAGCGAGGCCGGGACTCAGGGAGGGCCACGCCGATCACTTCTGTAAGGGAGCCTCTGTTCAGTCAGTCCTTCAACAAGCATGAATCCAGAGCCGCAGGCACTGCTGGTCCCATCCCAGGTGCTGGTCACGGAGCGGAGAAAGCTTGAGGGCCGTGGTGTCTACTGA-GGGGGCAGATGACAAACCAGGAGCACGGGTCACAGCACACACTGGCGCAGCTGCAGGGAACTGGGCAGAGCCTGGCCAGGCACATAGGGCAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90531315 261 -  91010382 CAGAGCGAGGCCGGGACTCAGGGAGGGCCACGCCGATCACTTCTGTAAGGGAGCCTCTGTTCAGTCAGTCCTTCAACAAGCATGAATCCAGAGCCGCAGGCACTGCTGGTCCCATCCCAGGTGCTGGTCACGGAGCGGAGAAAGCTTGAGGGCCGTGGTGTCTACTGA-GGGGGCAGATGACAAACCAGGAGCACGAGTCACAGCACACACTGGCGCAGCTGCAGGGAACTGGGCAGAGCCTGGCCAGGCACATGGGGCAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      120334 261 -    438239 CAGAGCGAGGCCGGGACTCAGGGAGGGCCACGCCAATCACTTCTGTAAGGGAGGCTCTGTTCAGTCAGTCCTTCAACAAGCACGAATCCAGAGCCACAGGCACTGCTGGTCCCATCCCAGGTGCTGGTCACGGAGCGGAGAAAGCTTGAGGGCCATGGTGTCTACTGA-GGGGGCAGATGACAAACCAGGAGCACGAGTCACAGCACACACTGGCGCAGCTGCAGGGAACTGGGCAGAGCCTGGTCAGGCACATGGGGCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      158456 261 -    514179 CAGAGTGAGGCCGGGACTCAGGGAGGGCCACACCGTTCACTTCTGTAAGGGAGCCTCTGTTCAGTCAGTCCTTCAACAAGCATGAATCCAGAGCCGCAGGCACTGCCGGTCCCATCCCGGGTGCTGGTCACGGAGCAGAGAAAGCTTGAGGGCCGTGGTGTCTACTGA-GGGGGCAGATGACAAGCCAGGAGCACGAGTCACAGCACACACTGGCGCAGCTGCAGGGAACTGGGCAGAGCCTGGCCAGGCACATGGGGCAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203808596 249 + 204313951 CAGAGGGAGCCTGGGACTCAGCGAGGGCTACACCGTTTGCTTCTGTAAGGGAGCTTCAGTT-AGtcagtcattcaacaaacatgaacccagagccatctgcactgcaggtcccatcctaggtgctggacatggagaagatgaaGCTTGAGGGCCTTCGTGTCTACTGA-GGGGGCAGATGACAAACCAGGAGCGTGACTCATAGCACACGCTGGTGCAGCTGCTGGGAGCTGGG-----------CAGGCACAGGGGGCAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15968927 260 +  16417988 CAGAGGGAGCCCGGGACTCAGGGAGGGCCACACCGTTTGCTTCTGTAAGGGAGCTTCAGTT-AGTCAGTCATTCAACGAACATGAACCCAGAGCCACCCGCACCGCAGGTCCCATCCTAGGTGCTGGTCATGGAGCAGATGAAGCCTGAGGGCCTTCGTGTCTATTGA-GGGGGCAGATGACAAACCAGGAGTGCAAGTCGTAGCACACGCTGGTGCAGCTGCCGGGAGCTGGGCAGGGCCAAGCCAGGCACAGGGGACAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       49041 259 +    298490 CAGAGGAAGCCCAGGACTCAGGGAGGGCTACACCGTTTGCTTCTGTAAGGGCGCTTCAGTT-AGtcagtcattcaacaaacacgaacccagagccacctgcactgcaggtcccatcctaggtgctggTCATGGAGCAGACGAAGCTTGAGGG-CTCCGTGTCTACTGA-GGGGACAGATGACAAACCAGGAGTGTGGGTCGTAGCACATGCTGGTGCAGCTGCTGGGAGCTGGGCAGGGCTGAGCCAGGCACAGGGGGCAGG
i cebCap1.NW_016108158v1   C 0 I 1705
s aotNan1.NW_018503740v1    25373676 250 -  25620257 CAGAGGGAGCCCGGGACTCAGGGAGGGCTACACGGTTCGCTCCTGG--------TTCAGTT-AGTCAGT-ATTCATCAAACATGAACCCAGAGCCACCCACACTGCAGGTCCCGTCCTAGGTGCTGGTCACAGAGCAGACGAAGCTCGAGGACCTTCGTGTCTACTGA-GGGG-CAGATGACAAACCAGGAGCTTGAGTCTTAGCACACGCCGGTGCAGCTGCCGGGAGCTGGGCAGGGCCGAGCCAGGCACAGGGGGCAGG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=529827.000000
s hg38.chr5_KI270793v1_alt     26005 64 +    126136 AGGCTGTGGCCCTAACGCCATGGTGGGCGCCACAGACCTTGTCAGAAGGGGTCTGAGCAGAGAC
s panTro5.chr5             181293499 64 - 181907262 AGGCTGTGGCCCTAACGCCATGGTGGGCGCCACAGACCTTGTCAGAAGGGGTCTGAGCAGAGAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183013883 64 - 183735486 AGGCTGTGGCCCTAACGCCATGGTGGGCGCCACAGACCTTGTCAGAAGGGGTCTGAGCAGAGAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      104338 64 +    698298 AGGCTGTGGCCCTAACGCCATGGTGGGCGCCACAGACCTTGTCAGAAGGTGTCTGAGCAGAGAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120528025 64 - 121039945 AGGCTGCGGCCCTAACATGGTGGTGGGTGCCACAGACCTTGTCAGAAGGTGTCTGAGCAGAGAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179481930 64 - 180051392 CGGCTGCGGCCCTAACGCGGTGCTGGGCGCCACAGACCTTGTCAGAAGGTGTCTGGGCAGAGAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181213025 64 - 181584905 CGGCTGCGGCCCTAACGCGGTGCTGGGCGCCACAGACCTTGTCAGAAGGTGTCTGAGCAGAGAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      207796 64 -   1764207 CGGCTGCGGCCCTAACGCGGTGCTGGGCGCCACAGACCTTGTCAGAAGGTGTCTGAGCAGAGAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      222250 64 -  16742782 CAGCTGCGGCCCTAACGCGGTGGTGGGCGCCACAGACCTTGTCAGAAGGTGTCTGAGCAGAGAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90531576 64 -  91010382 CGGCTGCGGCCCTAACGCGGTGGTGGGCACCACAGACCTTGTCAGAAGGTGTCTGAGCAGAGAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      120595 64 -    438239 CGGCTGCGGCCCTAACGTGGTGGTGGGCGCCACAGACCCTGTCAGAAGGTGTCTGAGCAGAGAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      158717 63 -    514179 CGGCTGCGGCCCTAATGCGGTGGTGGGCG-CACAGACCTTGTCAGAAGGTGTCTGAGCGGAGAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203808845 64 + 204313951 TGGCCGCAGCCTTAATGCGGTGGTGGGTGCCACAGACCTCCTTGGAAGGTGTCTGAGCAGAGAC
i calJac3.chr2             C 0 I 1685
s saiBol1.JH378155          15969187 64 +  16417988 CGGCCACAGCCTTAATGCGGTGGTGGGTGCCACAGACCTCCTTGGAAGGTGTCTGAGCAGAGAC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25373926 64 -  25620257 CGGCCGCAGCCTTAACGCAGTGGTGGGTGCCACAGATCTCCTTGGAAGGTGTCTGAGCAGAGAC
i aotNan1.NW_018503740v1   C 0 I 7772
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=7098.000000
s hg38.chr5_KI270793v1_alt     26069 1 +    126136 A
s panTro5.chr5             181293563 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183013947 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      104402 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120528089 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179481994 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181213089 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      207860 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      222314 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90531640 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      120659 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      158780 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15969251 1 +  16417988 A
i saiBol1.JH378155         C 0 I 1621
e aotNan1.NW_018503740v1    25373990 7772 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e calJac3.chr2             203808909 1685 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=2925237.000000
s hg38.chr5_KI270793v1_alt     26070 528 +    126136  
s panTro5.chr5             181293564 529 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183013948 529 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      104403 528 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120528090 528 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179481995 531 - 180051392  
i rheMac8.chr6             C 0 I 585
s macFas5.chr6             181213090 532 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      207861 531 -   1764207  
i macNem1.NW_012012389v1   C 0 I 968
s cerAty1.NW_012009470v1      222315 531 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90531641 531 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      120660 532 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      158781 529 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25373990 7772 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e saiBol1.JH378155          15969252 1621 +  16417988 I
e calJac3.chr2             203808909 1685 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=4500.000000
s hg38.chr5_KI270793v1_alt     26598 1 +    126136 g
s panTro5.chr5             181294093 1 - 181907262 g
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183014477 1 - 183735486 g
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      104931 1 +    698298 g
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120528618 1 - 121039945 g
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181213622 1 - 181584905 g
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      222846 1 -  16742782 g
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90532172 1 -  91010382 g
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      121192 1 -    438239 g
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      159310 1 -    514179 g
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25373990 7772 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e saiBol1.JH378155          15969252 1621 +  16417988 I
e calJac3.chr2             203808909 1685 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e macNem1.NW_012012389v1      208392 968 -   1764207 I
e rheMac8.chr6             179482526 585 - 180051392 I

a score=9752.000000
s hg38.chr5_KI270793v1_alt     26599 3 +    126136 ggc
s panTro5.chr5             181294094 3 - 181907262 ggc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183014478 3 - 183735486 ggc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      104932 3 +    698298 ggc
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181213623 3 - 181584905 agc
i macFas5.chr6             C 0 I 676
s cerAty1.NW_012009470v1      222847 3 -  16742782 ggc
i cerAty1.NW_012009470v1   C 0 I 4159
s chlSab2.chr4              90532173 3 -  91010382 ggc
i chlSab2.chr4             C 0 I 644
s manLeu1.NW_012110441v1      121193 3 -    438239 ggc
i manLeu1.NW_012110441v1   C 0 I 1362
s colAng1.NW_012118799v1      159311 3 -    514179 ggc
i colAng1.NW_012118799v1   C 0 I 663
e aotNan1.NW_018503740v1    25373990 7772 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e saiBol1.JH378155          15969252 1621 +  16417988 I
e calJac3.chr2             203808909 1685 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120528619 0 - 121039945 C
e macNem1.NW_012012389v1      208392 968 -   1764207 I
e rheMac8.chr6             179482526 585 - 180051392 I

a score=158112.000000
s hg38.chr5_KI270793v1_alt     26602 300 +    126136 ggccgggcgcggtggctcatgcctgtaatccgagcacttcgggaagctgaggcgggcggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaactccgtctctactaaaaaatattaaaaaattagctgggcgtggtggtggccgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccagggaggaggagcttgcagtgagccgagattgcgccactgcactccagcgtgggctacagagtgaaactctgtctc-------aaaaaaaaaaaaaaaaa
s panTro5.chr5             181294097 300 - 181907262 ggccgggcgcagtggctcatgcctgtaatccgagcacttcgggaagctgaggcgggcagatcacaaggtcaggagatcaagaccatcctggctaacatggtgaaactccgtctctactaaaaaatattaaaaaattagctgggcatggtggtgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccagggaggaggagcttacagtgagccgagattgcgccactgcactccagcgtgggctacagagtgaaactctgtctc-------aaaaaaaaaaaaaaaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183014481 298 - 183735486 ggccgggcgcggtggctcatgcctgtaatccgagcacttcgggaagctgaggcgggcagatcacaaggtcaggagatcaagaccatcctggctaacatggtgaaactccgtctctactaaaaaatattaaaaaattagccgggcatggtggtgggtgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaaccagggaggaggagcttacagtgagccgagattgcgccactgcactccagcgtgggctacagagtgaaactctgtctc---------caaaaaaaaaaaaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      104935 306 +    698298 ggccgggcgcggtggctcctgcctgtaatccgagcacttcgggaagctgaggtgggcggatcacaaggtcaggagatagagaccatcctggctaacacggtgaaactccgtctctactaaaaaatattaaaaaattagccgggcatggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtg-accagggaggaggagcttgtagtgagtggagattgcgccactgcactccagcctgggctacagagtgagactctgtctcaaaaaaaaaaaaaaaaaaaaaaaa
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25373990 7772 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e saiBol1.JH378155          15969252 1621 +  16417988 I
e calJac3.chr2             203808909 1685 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120528619   0 - 121039945 C
e manLeu1.NW_012110441v1      121196 1362 -    438239 I
e chlSab2.chr4              90532176 644 -  91010382 I
e cerAty1.NW_012009470v1      222850 4159 -  16742782 I
e colAng1.NW_012118799v1      159314 663 -    514179 I
e macNem1.NW_012012389v1      208392 968 -   1764207 I
e macFas5.chr6             181213626 676 - 181584905 I
e rheMac8.chr6             179482526 585 - 180051392 I

a score=363774.000000
s hg38.chr5_KI270793v1_alt     26902 416 +    126136 ggcaaaggacatgaacagatacttctcaaaacaagacatacaagtgaccaacaagtataagaaaaaattctcattatcagagaaatgcaaatcaaaaccacaatgagatgccagctcagcagtcagaatggcgattattacaaagtcaaaaaaacaacagatgctggtgaagctgaagaaaaaaggtgatgctcacgcactgctggtgggaacataaattagcccaggcccgtggagagcagtctggagattcctcaaagatcttaaaacacagctaccattcaacctagcaatcccattactgggtatatacccaaaagaaaataaaggattctgccaaaaggacacatatgttcatcacagcgttattcacgatagcaagacatggaacaaacctaggtgcccatcagtggtgg
s panTro5.chr5             181294397 416 - 181907262 ggcaaaggacatgaacagatacttctcaaaacaagacatacaagtgaccaacaagtataagaaaaaattctcattatcagagaaatgcaaatcaaaaccacaatgagatgccagctcagcagtcagaatggcgattattacaaagtcaaaaaaacaacagatgctggtgaagctgaagaaaaaaggtgatgctcacgcactgctggtgggaacataaattagcccaggcctgtggagagcagtctggagattcctcaaagatcttaaaacacagctaccattcaacctagcaatcccattactgggtatatacccaaaagaaaataaaggattctgccaaaaggacacatatgttcatcacagtgttattcacgatagcaagacatggaacaaacctaggtgcccatcagtggtag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183014779 416 - 183735486 ggcgaaggacatgaacagatacttctcaaaacaagacatacaagtgaccaacaagtataagaaaaaattctcattatcagagaaatgcaaatcaaaaccacaatgagatgccagctcagcagtcagaatggcgattattacaaagtcaaaaaaacaacagatgctggtgaagctgaagaaaaaaggtgatgctcacgcactgctggtgggaacataaattagcccaggcccgcggagagcagtctggagattcctcaaagatcttaaaacacagctaccattcaacctagcaatcccattactgggtatatacccaaaagaaaataaaggattctgccaaaaggacacatatgttcatcacagtgttattcacgatagcaagacatggaacaaacctaggtgcccatcagtggtag
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      105241 416 +    698298 ggcaaaggacatgaacagatacttctcaaaacaagacatacaagtgaccgacaagtataagaaaaaattctcattatcagagaaatgcaaatcaaaaccacaatgagatgccagctcagcagtcagaatggcgattattacaaagtcaaaaaaacaacagatgctggtgaagccgaagaaaaaaggtgatgctcacgcactgcttgtgggaacataaattagcccaggcccgtgaagagcagtctggagattcctcaaagatcttaaaacacagctaccattcaacctagcaatcccattactgggtatatacccaaaagaaaataaaggattctaccaaaagaacacatatgctcatctcagcgttattcactatagcaagacatggaaccaacccaggtgcccatcagtggtag
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120528619 409 - 121039945 ggtaaaggacaggaacagatacttctcaaaagaagacgtacaagggaccaac------aagaaaaaattcccattatcagagaaatgcaaatcaacaccacaatgagatgccagctcagcagtcagaatggcgattattacaaaatc-aaaaaacaacagatgatggtgaagccaaaggaaaaaggtaatgctcacgcactgctagtgggaacataaattagcccaggcccgtgaagagcactctggagattcctcaaagatcttaaaacacagctaccgttcaacctagcaatcccattaccgggtatatacccaaaagaaaataaaggattctaccaaaaggacacatatgtttgtcacagcgttattcacaatagcaagacatggagccaacccaggtgcccgtcagtggtag
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25373990 7772 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e saiBol1.JH378155          15969252 1621 +  16417988 I
e calJac3.chr2             203808909 1685 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e manLeu1.NW_012110441v1      121196 1362 -    438239 I
e chlSab2.chr4              90532176 644 -  91010382 I
e cerAty1.NW_012009470v1      222850 4159 -  16742782 I
e colAng1.NW_012118799v1      159314 663 -    514179 I
e macNem1.NW_012012389v1      208392 968 -   1764207 I
e macFas5.chr6             181213626 676 - 181584905 I
e rheMac8.chr6             179482526 585 - 180051392 I

a score=2193.000000
s hg38.chr5_KI270793v1_alt     27318 3 +    126136 act
s panTro5.chr5             181294813 3 - 181907262 act
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183015195 3 - 183735486 act
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      105657 3 +    698298 acc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120529028 3 - 121039945 aat
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181214302 3 - 181584905 acc
i macFas5.chr6             I 676 C 0
e aotNan1.NW_018503740v1    25373990 7772 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e saiBol1.JH378155          15969252 1621 +  16417988 I
e calJac3.chr2             203808909 1685 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e manLeu1.NW_012110441v1      121196 1362 -    438239 I
e chlSab2.chr4              90532176 644 -  91010382 I
e cerAty1.NW_012009470v1      222850 4159 -  16742782 I
e colAng1.NW_012118799v1      159314 663 -    514179 I
e macNem1.NW_012012389v1      208392 968 -   1764207 I
e rheMac8.chr6             179482526 585 - 180051392 I

a score=3642.000000
s hg38.chr5_KI270793v1_alt     27321 4 +    126136 acat
s panTro5.chr5             181294816 4 - 181907262 acat
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183015198 4 - 183735486 acat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      105660 4 +    698298 acgt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120529031 4 - 121039945 acat
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181214305 4 - 181584905 ataa
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203810594 4 + 204313951 ataa
i calJac3.chr2             I 1685 C 0
e aotNan1.NW_018503740v1    25373990 7772 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e saiBol1.JH378155          15969252 1621 +  16417988 I
e canFam3.chr34             11692045 9149 +  42124431 I
e manLeu1.NW_012110441v1      121196 1362 -    438239 I
e chlSab2.chr4              90532176 644 -  91010382 I
e cerAty1.NW_012009470v1      222850 4159 -  16742782 I
e colAng1.NW_012118799v1      159314 663 -    514179 I
e macNem1.NW_012012389v1      208392 968 -   1764207 I
e rheMac8.chr6             179482526 585 - 180051392 I

a score=16729.000000
s hg38.chr5_KI270793v1_alt     27325  9 +    126136 aaagaa----aac
s panTro5.chr5             181294820  9 - 181907262 aaagaa----aac
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183015202  9 - 183735486 aaagaa----aac
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      105664  9 +    698298 aaagaa----aac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120529035  9 - 121039945 aaagaa----aat
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181214309 13 - 181584905 aaaGaatgagaat
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203810598  9 + 204313951 aaaaaa----aat
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15970873  9 +  16417988 aaagaa----aat
i saiBol1.JH378155         I 1621 C 0
e aotNan1.NW_018503740v1    25373990 7772 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e canFam3.chr34             11692045 9149 +  42124431 I
e manLeu1.NW_012110441v1      121196 1362 -    438239 I
e chlSab2.chr4              90532176 644 -  91010382 I
e cerAty1.NW_012009470v1      222850 4159 -  16742782 I
e colAng1.NW_012118799v1      159314 663 -    514179 I
e macNem1.NW_012012389v1      208392 968 -   1764207 I
e rheMac8.chr6             179482526 585 - 180051392 I

a score=44396.000000
s hg38.chr5_KI270793v1_alt     27334 9 +    126136 gtggtacat
s panTro5.chr5             181294829 9 - 181907262 gtggtacat
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183015211 9 - 183735486 gtggtacat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      105673 9 +    698298 gtggtacat
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120529044 9 - 121039945 gtggtacat
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179483111 9 - 180051392 gtggtacgt
i rheMac8.chr6             I 585 C 0
s macFas5.chr6             181214322 9 - 181584905 gtggtacgt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      209360 9 -   1764207 gtggtacgt
i macNem1.NW_012012389v1   I 968 C 0
s cerAty1.NW_012009470v1      227009 9 -  16742782 gtggtacgt
i cerAty1.NW_012009470v1   I 4159 C 0
s chlSab2.chr4              90532820 9 -  91010382 gtggtatgt
i chlSab2.chr4             I 644 C 0
s manLeu1.NW_012110441v1      122558 9 -    438239 gtggtacgt
i manLeu1.NW_012110441v1   I 1362 C 0
s calJac3.chr2             203810607 7 + 204313951 gtagtac--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15970882 7 +  16417988 gtagtac--
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25373990 7772 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       49300 1705 +    298490 I
e canFam3.chr34             11692045 9149 +  42124431 I
e colAng1.NW_012118799v1      159314 663 -    514179 I

a score=89273.000000
s hg38.chr5_KI270793v1_alt     27343 10 +    126136 atacactgtg
s panTro5.chr5             181294838 10 - 181907262 atacactgtg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183015220 10 - 183735486 atacactgtg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      105682 10 +    698298 atacactgtg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120529053 10 - 121039945 atacactgtg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179483120 10 - 180051392 atacactgtg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181214331 10 - 181584905 atacactgtg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      209369 10 -   1764207 atacactgtg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      227018 10 -  16742782 atacactgtg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90532829 10 -  91010382 atacactgtg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      122567 10 -    438239 atacactgtg
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203810614 10 + 204313951 atacaccatg
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15970889 10 +  16417988 atacaccatg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       51005 10 +    298490 atacaccgtg
i cebCap1.NW_016108158v1   I 1705 C 0
s aotNan1.NW_018503740v1    25381762 10 -  25620257 atacaccatg
i aotNan1.NW_018503740v1   I 7772 C 0
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I
e colAng1.NW_012118799v1      159314 663 -    514179 I

a score=1996769.000000
s hg38.chr5_KI270793v1_alt     27353 205 +    126136 gaatactacgtagccataaaaagaatggaatcgtgtcctttgcagcaacatggatgcagctggaggccattctcgtaagcaaattaatgcaggagcaaaaaaccaaataccgcatgttcttacttacaagtgggagctaaacattgaggacacgtggacaaaaagatgggaacaaaagtcactggggcctcctggagggttggg-g
s panTro5.chr5             181294848 205 - 181907262 aaatactacgtagccataaaaagaatggaattgtgtcctttgcagcaacatggatgcagctggaggccattctcataagcaaattaatgcaggagcagaaaaccaaataccgcatgttctcacttacaagtgggagctaaacattgaggacacgtggacaaaaagatgggaacaaaagtcactggggcctcctggagggctggg-g
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183015230 205 - 183735486 gaatactacgtagccataaaaagaatggaattgtgtcctttgcagcaacatggatgcagctggaggccattctcataagcaaattaatgcaggagcagaaaaccaaataccgcatgttctcacttacaagtgggagctaaacattgaggacacgtggacaaaaagatgggaacaaaagtcactggggcctcctggagggttggg-g
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      105692 205 +    698298 gaatactacgtggccataaaaagaatggaatcgtgtcctttgcagcaacatggatgcagctggaggccattctcgtaagcaaattaatgcaggagcagaaaaccaaataccgcattttctcacgtacaagtgggagctaaacattgaggacacgtggacaaaaagatgggaacaaaagtcactggggcctcctggagggttggg-g
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120529063 205 - 121039945 gaatactacgtagccataaaaagaatggaatcgtgtcctttgcagcaacatggatgcagcaggagaccattctcctaagcaaattaatgcaggaacagaaaaccaaataccgcatgttctcacttacaagtgggagctaaacattgaggacacgtggacaaaaatatgggaacaaaagtcactggggcctcctggagggttggg-g
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179483130 205 - 180051392 gaatactacgtagccatgaaaagaatgaaaatgtgtcctttgcagcaacatggatgcaactggaggccgttctcctaagcaaattaatgcaggaacagaaaaccaaatacggtatgttctcacttacaagtgggagctaaacattgaggacacgtgtacaaaaatatgggaacaaaagacactgcgacctcctggagggttggg-g
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181214341 196 - 181584905 gaatactacgtagc---------aatgaaaatgtgtcctttgcagcaacatggatgcaactggaggccgttctcctaagcaaattaatgcaggaacagaaaaccaaatacggtatgttctcacttacaagtgggagctaaacattgaggacacgtgtacaaaaatatgggaacaaaagacactgcggcctcctggagggttggg-g
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      209379 205 -   1764207 gaatactacgtagccatgaaaagaatgaaaatgtgtcctttgcagcaacatggatgcaactggaggccgttctcctaagcaaattaatgcaggaacagaaaaccaaatatggtatgttctcacttacaagtgggagctaaacattgaggacacgtgtacaaaaatatgggaacaaaagacactgcggcctcctggagggttggg-g
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      227028 205 -  16742782 gaatactatgtagccatgaaaagaatgaaaatgtgtcctttgcagcaacatggatgcaactggaggccgttctcctaagcaaattaatgcaggaacagaaaaccaaatacggcatgttctcacttacaagtgggagctaaacattgaggacacgtgtacaaaaatatgggaacaaaagacactgcggccttctggagggttggg-g
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90532839 205 -  91010382 gaatactacgtagccatgaaaagaatgaaaatgtgtcctttgcagcaacatggatgcaactggaggccgttctcctaagcaaattaatgcaggaacagaaaaccaaatatggcatgttctcacttacaagtgggagctaaacattgaggacatgtgtacaaaaatatgggaacaaaagacactgcggcctcctggagggttggg-g
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      122577 205 -    438239 gaatactacgtagccatgaaaagaatgaaaatgtgtcctttgcagcaacatggatgcaactggaggccgttctcctaagcaaattaatgcaggaacagaaaaccaaatacggcatgttctcacttacaagtgggagctaaacattgaggacacgtgtacaaaaatatgggaacaaaagacactgcggcctcctggagggttggg-g
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      159977 205 -    514179 gaatactacgtagccatgaaaagaatgaaaatgtgtcctttgcagcaacaagggtgcaactggaggctgttctcctaagcaaattaatgcaggaacagaaaaccaaatacggcatgttctcacttacaagtgggagctaaacattgaggacacgtgtacaaaaatatgggaacaaaagacactgcagcctcctggagggttggg-g
i colAng1.NW_012118799v1   I 663 C 0
s calJac3.chr2             203810624 204 + 204313951 ggatactatgcagccatgaaaagaacgaaattgtgtcctttgcagcaatgtggatgcagctggaggccattctcctaagcaaattaatgcaggaacagaaaaccaaacactgcatgttctcacttacaagtgggagataaacattgaggacatgtggacaaaaatatggaaacaaaagacactggggcctcctggagggttggg--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15970899 201 +  16417988 gaatactatgcagccatgaaaagaatgagattgtgtcctttgcagcaatgtggacgcagctggaggccattctcctacgcaaattaatgcaggaacagaaaaccaaacactgcgtgttctcacttacaagtgggagataaacattgaggacatgtggacaaaaatatgggaacaaaagacac---ggcctcctggagggtcggg--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       51015 200 +    298490 gaatactatgcagccatgaaaagaatgagattgtgtcctttgcagcaatgtggatgcagctggatgccattctcttaagcaaattattgcaggcacagaaaaccaaacactgcatgttctc----acaagtgggagataaacactgaggacatgtggacaaaaatatgggaacaaaagacagtggggcctcctggagcgttggg--
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25381772 205 -  25620257 gaatactatgcagccatgaaaagaatgaaattgtgtcctttgcagcaatgtggatgcagctggaggccattctcctaagcaaattaatgcaggaacagaaaaccaagcactgcgtgttctcacttacaagtgggagataaacactgaggacatgtggacaaaaatatgggaacaaaagacactggggcctcctggagggttgggg-
i aotNan1.NW_018503740v1   C 0 I 17
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=103726.000000
s hg38.chr5_KI270793v1_alt     27558 22 +    126136 atggaggattaa----------------------------------------------------------agaacttcct
s panTro5.chr5             181295053 22 - 181907262 atggaggattaa----------------------------------------------------------agaacttcct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183015435 22 - 183735486 atggaggattaa----------------------------------------------------------agaacttcct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      105897 80 +    698298 atggaggattaaagaacttccttcaggtatgatgctcgccatctgggtgatggcgcccgtcctccaaaccagaacttcct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120529268 22 - 121039945 atggaggattaa----------------------------------------------------------agaacttcct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179483335 21 - 180051392 at-ggggattaa----------------------------------------------------------agaacttcct
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181214537 21 - 181584905 at-ggggattaa----------------------------------------------------------agaacttcct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      209584 21 -   1764207 at-ggggattaa----------------------------------------------------------agaacttcct
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      227233 21 -  16742782 at-ggggattaa----------------------------------------------------------agaacttcct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90533044 21 -  91010382 at-ggggattaa----------------------------------------------------------agaactgcct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      122782 21 -    438239 at-ggggattaa----------------------------------------------------------agaacttcct
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      160182 22 -    514179 atgggggattaa----------------------------------------------------------agaacttcct
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203810828 17 + 204313951 -----ggattaa----------------------------------------------------------aaacctgcct
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          15971100 17 +  16417988 -----ggattaa----------------------------------------------------------aaacctggct
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       51215 17 +    298490 -----gaatgaa----------------------------------------------------------aaacctgcct
i cebCap1.NW_016108158v1   C 0 I 1
e aotNan1.NW_018503740v1    25381977 17 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=4107296.000000
s hg38.chr5_KI270793v1_alt     27580 448 +    126136 tcaggtatgatgctcgccatctgggtgatggcacccgtcctccaaacctcagcatcacacaatattctcatgtaacaaatctgcacgtgtg-ccc-ctaaatctaaaataaaagttgagaTTTTAAAAGTAAAGTAAGATAAATGTCATATCAGTTATTCGATCCGTCAAACGTTTCCTTTAACACCTTAAATAGAAACAGTCATAGGTATTGGAAG----AATAAAGAATTGGAATGGAAGTCCACAGAGGCAAAATGGGCAAACAATTAACATATGTAAGCAGGTATTTGTTGTTTCTAGTAGGTCTCAA---TGTTGTTTACACAT-------TTGGTTGGTTGTTTTTGGTGAATATTCACTGGATTCAAGTAAGTGGTTCATTTTCTAATCCCTGgagtgaagccgctacaaacagtcgtgtgtagattttcccgtgaaataaactttcatttctccag
s panTro5.chr5             181295075 448 - 181907262 tcaggtatggtgctcgccatctgggtgatggcacccgtcctccaaacctcagcatcacacaatattctcatgtaacaaatctgcacgtgtg-ccc-ctaaatctaaaataaaagttgagaTTTTAAAAGTAAAGTAAGATAAATGTCATATCAGTTATTTGATCCGTCAAACGTTTCCTTTAACACCTTAAATAGAAACAGTCGTAGGTATTGGAAG----AATAAAGAATTGGAATGGAAGTCCACAGAGGCAAAATGGGCAAACAATTAACATATGTAAGCAGGTATTTGTTGTTTCTAGTAGGTCTCAA---TGTTGTTTACACAT-------TTGGTTGGTTGTTTTTGGTGAATATTCACTGGATTCAAGTAAGTGGTTCATTTTCTAATCCCTAgagtgaagccgctacaaacagtcgtgtgtagattttcccgtgaaataaactttcatttctccag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183015457 448 - 183735486 tcaggtatggtgctcgccatctgggtgatggcacccgtcctccaaacctcagcatcacacaatattctcatgtaacaaatctgcacgtgtg-ccc-ctaaatctaaaataaaagttgagaTTTTAAAAGTAAAGTAAGATAAATGTCATATCAGTTATTTGATCCGTCAAACGTTTCCTTTAACACCTTAAATAGAAACAGTCGTAGGTATTGGAAG----AATAAAGAATTGGAATGGAAGTCCACAGAGGCAAAATGGGCAAACAATTAACATATGTAAGCAGGTATTTGTTGTTTCTAGTAGGTCTCAA---TGTTGTTTACACAT-------TTGGTTGGTTGTTTTTGGTGAATATTCACTGGATTCAAGTAAGTGGTTCATTTTCTAATCCCTAgagtgaagccgctacaaacagtcgtgtgtagattttcccgtgaaataaactttcatttctccag
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      105977 459 +    698298 tcaggtatgatgctcgccatctgggtgatggcacccgtcctccaaacctcagcatcacacaatattctcatgtaacaaatctgcacgtgtg-ccc-ctaaatctaaaataaaagttgaaaTTTTAAAAGTAAAGTAAGATAAATGTCATATCAGTTATTTGATCAGTCAAACGTTTCCTTTAACACCTTAAATAGAAACAGTCATAGGTATTGGAAGAGTAAATAAAGAATTGGAATGGAAGTCCGCCAAAGCAAAATGGGCAAACAATTAACATATGTAAGCAGGTATTTGTTGTTTTCAGTAGGTCTCAA---TGTTGTTTACACATTTGTCAGTTGGTTGGTTGTTTTTGGTGAATATTCACTGGATTCATGTAAGTGGTTCATTTTCTAATCCCTGgaatgaagccgctacaaacagtcatgtgtagattttcccgtgaaataaactttcatttctccag
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120529290 463 - 121039945 tcaggtatgatgctcgccatctgggtgatggcacccgtcctccaaacctcagcatcacgcaatattctcatgtaacaaatctgcacgtgtgcccc-ctaaatctaaaataaaagttgaaaTTTTAAAAGTAAAGTAAGATAAATGTCATATCAGTTATTTAATCAGTCAAACGTTTCCTTTAACACCTTAAATAGAAACAGTCGTAGGTATTGGAAGAATAAATGAAGAATTGGAATGGAAGTCCACAGACGCAAAATGGGCAAACAATTAACATATGTAAGCAGGTATTTGTTGTTTTTAGTAGGTCTCAATGTTGTTGTTTACACATTTGTCAGTTGGTTGGTTGTTTATGGTGAATATTCATTTGATTCAGGTAAGTGGTTCATtttccaattcctggagtgaagccgctacaaacagtcatgtgtagattttcccgtgaaataaactttcatttctccag
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179483356 458 - 180051392 tcaggtatgatgctcaccatctgggtgatgggacgcttcctccaaacctcagcatcacgcaatattctcatgtaacaaatctgcacgggtg-cctgctaaaactaaaataaaagttgaaaTTTTAAAAGTAAAGTAAGATAAATGTCATATCAGTTATTTGATCAGTCAAACGTTTCATTTAACACCTTAAATAAAAACAGTCATAGGTATTGGAAG----GATGAAGAATTGAAATGGAAGTCCACAGAGGCAAAACGGGCAAACAGTTAAAATATGTAAGCAGGTATTGTTTGTTTCACGTAGGTCTCAATGTTGTTGTTTACACATTTGTCAGTTGATTGGTTGTTT-TGGTGAATATTCATTGGACTCAAGTAAACGGTTCATTTTCTAATTCCTGgagtgaggccgctataaacggtcatgtgtagattttcccgtgaaatagactttcatctctccag
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181214558 458 - 181584905 tcaggtatgatgctcaccatctgggtgatgggacgcttcctccaaacctcagcatcacgcaatattctcatgtaacaaatctgcacgggtg-cctgctaaaactaaaataaaagttgaaaTTTTAAAAGTAAAGTAAGATAAATGTCGTATCAGTTATTTGATCAGTCAAACGTTTCATTTAACACCTTAAATAAAAACAGTCGTAGGTATTGGAAG----GATGAAGAATTGAAATGGAAGTCCACAGAGGCAAAACGGGCAAACGGTTAAAATATGTAAGCAGGTATTGTTTGTTTCACGTAGGTCTCAATGTTGTTGTTTACACATTTGTCAGTTGATTGGTTGTTT-TGGTGAATATTCATTGGACTCAAGTAAACGGTTCATTTTCTAATTCCTGgagtgaggccgctataaacggtcatgtgtagattttcccgtgaaatagactttcatctctccag
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      209605 458 -   1764207 tcaggtatgatgctcaccatctgggtgatgggacgcttcctccaaacctcagcatcacgcaatattctcatgtaacaaatctgcacgggtg-cctgctaaaactaaaataaaagttgaaattttaaaagtaaagtaagataaatgtcttatcagttatttgATCAGTCAAACGTTTCATTTAACACCTTAAATAAAAACAGTCGTAGGTATTGGAAG----GATGAAGAATTGAAATGGAAGTCCACAGAGGCAAAATGGGCAAACAGTTAAAATATGTAAGCAGGTATTGTTTGTTTCACGTAGGTCTCAATGTTGTTGTTTACACATTTGTCAGTTGATTGGTTGTTT-TGGTGAATATTCATTGGACTCAAGTAAACGGTTCATTTTCTAATTCCTGgagtgaggccgctataaacggtcatgtgtagattttcccgtgaaatagactttcatctctccag
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      227254 458 -  16742782 tcaggtatgatgctcgccatctgggtgatgggacgcttcctccaaacctcagcatcacgcaatattctcatgtaacaaatctgcacgggtg-cctgctaaaactaaaataaaagttgaaaTTTTAAAAGTAAAGTAAGATAAATGTCATATCAGTTATTTGATCAGTCAAACGTTTCATTTAACACCTTAAATAAAAACAGTCGTAGGTATTGGAAG----GATGAAGAATTGAAATGGAAGTCCACAGAGGCAAAACGGGCAAACAGTTAAAATATGTAAGCAGGTATTGTTTGTTTCGCGTAGGTCTCAGTGTTGTTGTTTACACATTTGTCAGTTGATTGGTTGTTT-TGGTGAATATTCATTGGACTCAAGTAAACGGTTCATTTTCTAATTCCTGgagtgaggccgctataaacggtcatgtgtagattttcccatgaaatagactttcatctctccag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90533065 458 -  91010382 tcaggtatgatgctcgccatctgggtgatgggacgcgtcctccaaacctcagcatcacgcaatattctcatgtaacaaatctgcacggctg-cctgctaaagctaaaataaaagttgaaaTTTCAAAAGTAAAGTAAGATAAATGTCATATCAGTTATTTGATCAGTCAAACGTTTCATTTAACACCTTAAATAGAAATAGTCGTAGGTATTGGAAG----GATGAAGAATTGGAATGGAAGTCCACGGAGGCAAAACGGGCAAACAGCTCAAATATGTCCGCAGGTATTGTCTGTTTCACGTAGGTCTCAGTGTTGTTGTTTGCACATTTGTCAGCTGATTGGTTGTTT-TGGTGACTATTCACTGGACTCAAGTAAACGGTTCATTTTCTAATTCCTGgagtgaagccgctataaacggtcacgtgtagattttcccgtgagatagactttcatctctccag
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      122803 458 -    438239 tcaggtatgatgctcgccatctgggtgatgggacgcttcctccaaacctcagcatcacgcaatattctcatgtaacaaatctgcatgggtg-cctgctaaaactaaaataaaagttgaaaTTTTAAAAGTAAAGTAAGATAAATGTCATATCAGTTATTTGATCAGTCAAACGTTTCATTTAACACCTTAAATAAAAACAGTCGTAGGTATTGGAAG----GATGAAGAATTGAAATGGAAGTCCACAGAGGCAAAACGGGCAAACAGTTAAAATATGTAAGCAGGTATTGTTTGTTTCGCGTAGGTCTCAATGTTGTTGTTTACACATTTGTCAGTTGATTGGTTGTTT-TGGTGAATATTCATTGGACTCAAGTAAACGGTTCATTTTCTAATTCCTGgagtgaggccgctataaacggtcatgtgtagattttcccgtgaaatagactttcatctctccag
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      160204 458 -    514179 tcaggtatgatgctcgccatctgggtgatgggacgcgtcctccaaacctcggcatcacgcaatattctcatgtaacaaatctgcacgggtg-cctgctaaaactaaaataaaagttgaaaTTTTAAAAGTAAAGTAAGATAAATGCCATATCAGTTATTTGATCAGTCAAATGTTTCATTTAACACCTTAAATAGAAACAGTCGTAGGTATTGGAAG----GATAAAGAATTGGAATGGAAGTCCACAGAGGCAAAACGGGCAAACAATTAAAATATGTAAGCAGGTATTGTTTGTTTCGTGTAGGTCTTAATGTTGTTGTTTACACATTTGTCAGTTGATTGGTTGTTT-TGGTGAATATTCATTGGATTCAAGTAAACGGTTCATTTTCTAATTCCTGgagtgaagccgctctaaacagtcatgtgtagattttcccgtgaaataaactttcatctctccag
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203810846 462 + 204313951 tcgagtgtgatgcttgctgtctgggtgatgggacctgtactccaaacctcagcatcacgcagtgttcccaggtaacaaatctgcacatgtg-ccagttaaatctaaaataaaagttgaaaTTTTAAAAGGGAAGTAAGATAAACGTCATACCAGTTATTTGATGAGTCGAATGTTTCATCCGATACCTTAAGCAGAAATAGTCATAGGTTTTGGAAGAATAAGTAAAGAACTGGAGTGGGAATCCACAGAGGACAGATGGGCAAACCATTAAAACATGTCAGCAGGTA-TTTTTATTTCCAGTAGGTCCCAATGTTGTTGTTTACACGTTCCTCAGTTGATTGGTTGCTTTCGGTGAATATTCGTTAGATTCACGTAAGTGGTTCATTTCCTAattactggactgaagccgctataaacagccctgtgtagattttcctgtgcaataaacttttatttctccag
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          15971118 462 +  16417988 tcaagtgtgacgctagctgtctgggtgatgggacccacactccaaacctcagcatcacgcagtgttcccatgtaacaaatgtgcacatgtt-ccaactaaatctaaaatataagttgaaTTTTTAAAAGGGAAATAAGATAAATGTCCTACCAGTT-TTTGATCAGTCAAATGTTTCATTCAATACCTTAAGCAGAAATAGTCATAGGTATTGGAAGAATAAGTAAAGAATTGGAATGGAAATCCACAGAGGAAAAATGGGCAAGCAATTAAAATGTGTCAGCAGGTATTTTTTATTTTTACTAGGTCCCAATGTTGTTGTTTACACGTTTGTCAGTTGATTAGTTGTTTTTGGTGAATATTCATTAGATTcatgtaagtggtttattttctaattactggactgaagccgctataaacagccctgtgtagattttcctgtgaaataaactttcatttctccag
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1       51233 457 +    298490 tcgagtgtgacgcttgctgtctgggtgatgggacccgtactccaaacctcagcatcacgcagtgttcccatgtaacaaatctgcacg-gtg-ccagctaaatctaaaataaaagttgaaaTTTTAAAAGGGAAATAAGATAAATATCATACCAGTTATTTGA----TCAAATGTTTCATTCAATACCTTAAGCAGAAAGAGTCATAGGTATCGGAAGAACAAGTAAAGAATTGGAATGGAAATCCACAGAGGAAAAATGGGCAAACAATTAAAATGTGTCAACAGATATTTTTTATTTTTAGTAGGTCCCAATGTTGTTGCTTACACGTTTGTCAGTTGATTGGTTGTTTTTGGTGAATATTCGTTAGATTcatgtaagtggttcattttctaattact-gactgaagccgctataaacagccatgtgtagattttcctgtgaaataaactttcatttctccag
i cebCap1.NW_016108158v1   I 1 C 0
s aotNan1.NW_018503740v1    25381994 443 -  25620257 tggagtgcgatgtttgccgtctgggtgacgggacccgtactccaaacctcagcctcgcgcagcgttcccatgtcacaaatctgcacgtgtg-ccagctgagtctaaaacaaaagttgaaaTTTTAAAAGGGAAATAAGATAAATGGCACGCCAGTTATTTGCTCAGTCAAATGTTTCACTCGATACCTTAAGCAGAAATAGTCATAGGGATTGGAAG--------------------GGAAATCCACAGAGGAAAAACGGGCAAACAATTAACACGTGTCCGCAGGTACTTTCTATTTTTAGTACATCCCAATGTTGTTGTTCACACGTTTGTCGGTGGATTCGTTGTTTTTGGTGAATATTCGTTAGATTCACGTAAGGGGTTCCTTTTCTAATTCCTGGACCGaagccgctataaacagccatgtgtggatttccctgtgaaataaactttcatttctccag
i aotNan1.NW_018503740v1   I 17 I 3367
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=4264714.000000
s hg38.chr5_KI270793v1_alt     28028 606 +    126136  
s panTro5.chr5             181295523 606 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183015905 606 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      106436 602 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120529753 606 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179483814 561 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181215016 561 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      210063 561 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      227712 560 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90533523 560 -  91010382  
i chlSab2.chr4             C 0 I 314
s manLeu1.NW_012110441v1      123261 560 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      160662 600 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203811308 589 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15971580 552 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       51690 584 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=6685.000000
s hg38.chr5_KI270793v1_alt     28634 1 +    126136 t
s panTro5.chr5             181296129 1 - 181907262 t
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183016511 1 - 183735486 t
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      107038 1 +    698298 t
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120530359 1 - 121039945 t
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179484375 1 - 180051392 t
i rheMac8.chr6             C 0 I 312
s macFas5.chr6             181215577 1 - 181584905 t
i macFas5.chr6             C 0 I 312
s macNem1.NW_012012389v1      210624 1 -   1764207 t
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      228272 1 -  16742782 t
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90534397 1 -  91010382 t
i chlSab2.chr4             I 314 C 0
s manLeu1.NW_012110441v1      123821 1 -    438239 t
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      161262 1 -    514179 t
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203811897 1 + 204313951 g
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15972132 1 +  16417988 t
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       52274 1 +    298490 t
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=134704.000000
s hg38.chr5_KI270793v1_alt     28635 15 +    126136 gtctgaatgcctttt
s panTro5.chr5             181296130 15 - 181907262 gtctgaatgcctttt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183016512 15 - 183735486 gtctgaatgcctttt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      107039 15 +    698298 gtctgaatgcctttt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120530360 15 - 121039945 gtctgaatgcctttt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179484688 15 - 180051392 gtctgaatgcctttt
i rheMac8.chr6             I 312 C 0
s macFas5.chr6             181215890 15 - 181584905 gtctgaatgcctttt
i macFas5.chr6             I 312 C 0
s macNem1.NW_012012389v1      210625 15 -   1764207 gtctgaatgcttttt
i macNem1.NW_012012389v1   C 0 I 3886
s cerAty1.NW_012009470v1      228273 15 -  16742782 gtctgaatgcttttt
i cerAty1.NW_012009470v1   C 0 I 4044
s chlSab2.chr4              90534398 15 -  91010382 gtctgaatgcctttt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      123822 15 -    438239 gtctgaatgcttttt
i manLeu1.NW_012110441v1   C 0 I 3559
s colAng1.NW_012118799v1      161263 15 -    514179 gtctgaatgcctttt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203811898 15 + 204313951 gtcagaatgcctttt
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15972133 15 +  16417988 gtcggaatgcctttc
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       52275 15 +    298490 gtcagaatgcctttt
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=6703159.000000
s hg38.chr5_KI270793v1_alt     28650 1328 +    126136  
s panTro5.chr5             181296145 1332 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183016527 1332 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      107054 1334 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120530375 1362 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179484703 1341 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181215905 1341 - 181584905  
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90534413 1353 -  91010382  
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      161278 1351 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203811913 1331 + 204313951  
i calJac3.chr2             C 0 I 2500
s saiBol1.JH378155          15972148 1440 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       52290 1379 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I
e manLeu1.NW_012110441v1      123837 3559 -    438239 I
e cerAty1.NW_012009470v1      228288 4044 -  16742782 I
e macNem1.NW_012012389v1      210640 3886 -   1764207 I

a score=5046191.000000
s hg38.chr5_KI270793v1_alt     29978 1150 +    126136  
s panTro5.chr5             181297477 1150 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183017859 1150 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      108388 1149 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120531737 1147 - 121039945  
i nomLeu3.chr6             C 0 M 719
s rheMac8.chr6             179486044 1179 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181217246 1179 - 181584905  
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90535766 1178 -  91010382  
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      162629 1242 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15973588 1131 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       53669 1137 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e manLeu1.NW_012110441v1      123837 3559 -    438239 I
e cerAty1.NW_012009470v1      228288 4044 -  16742782 I
e macNem1.NW_012012389v1      210640 3886 -   1764207 I

a score=1751836.000000
s hg38.chr5_KI270793v1_alt     31128 498 +    126136 tggaatgctgggaccttgtccccaccaaggccccttcactgtgccctttgtcacagtcatcgtattgcacctgcacatattgaaaattcaaccaagcaatgttgttaattgttgctttcaaccatcatatgtactttaaagactcatctacatgctgtctacaagaaactcattttcaatgtaatgatacagactgtttcacagtcaaaggatgggaaaagagctatcaggccaacatcagttacacaaaaatcctcaaacagctctattcatgtgagacaaaatagattcagagcaagaaaagtcacttggggtaaagaggagaacaatagtgtgctgtgtttccttggacatttactgcttgtcttgccctttcttccttcttggggttgtgggttttcctct-gtatcttccctcaagctgaagaac-ttgctttggcatcttttaaagcaggtgtgccggcaacaaattctcttagtgcgtcctcactggagatca
s panTro5.chr5             181298627 498 - 181907262 tggaatgctgggaccttgtccccaccaaggccccttcactgtgccctttgtcacagtcatcgtattgcacctgcacatattgaaaattcaaccaagcaatgttgttcattgtcactttcaaccatcatatgtactttaaagactcatctacatgctgtctacaagaaactcattttcaatgtaatgatacagactgtttcacagtcaaaggatgggaaaagacctatcaggccaacatcagttacacaaaaatcctcaaacagctctattcatgttagacaaaatagattcagagcaagaaaagtcacttggggtaaagaggagaacaatagtgtgctgtgtttccttggacatttactgcttgtcttgccctttcttccttcttggggttgtgggttttcctct-gtatcttccctcaagctgaagaac-ttgctttggcatcttttaaagcaggtgtcccggcaacaaattctcttagtgcgtcctcactggagatca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019009 498 - 183735486 tggaatgctgggaccttgtccccaccaaggccccttcactgtgccctttgtcacagtcatcgtattgcacctgcacatattgaaaattcaaccaagcaatgttgttcattgtcgctttcaaccatcatatgtactttaaagactcatctacatgctgtctacaagaaactcattttcaatgtaatgatacagactgtttcacagtcaaaggatgggaaaagacctatcaggccaacatcagttacacaaaaatcctcaaacagctctattcatgttagacaaaatagattcagagcaagaaaagtcacttggggtaaagaggagaacaatagtgtgctgtgtttccttggacatttactgcttgtcttgccctttcttccttcttggggttgtgggttttcctct-gtatcttccctcaagctgaagaac-ttgctttggcatcttttaaagcaggtgtcccggcaacaaattctcttagtgcgtcctcactggagatca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      109537 495 +    698298 tggaatgctgggaccttgtccccaccaaggccccttcactgtgccctttgtcacagtcatcgtattgcacctgcacatattgaaaattcaaccaagcaatgttgttcattgtcgttttcaaccatcatatgtactttaaagactcatctacatgctgtctacaagaaactcattttcaatgtaatgatacagactgtttcacagtcaaaggatgggaaaagacctatcaggccaacatcagttacacaaaaatcctcaaacagctctattcatgttagacaaaatagattcagagcaagaaaagtaacttggggtaaa---gagaacaatagtgtgctgtgtttccttggacatttactgcttgtcttgccctttcttccttcttggggttgtgggttttcctct-gtatcttccctcaagctgaagaac-ttgctttggcatcttttaaagcaggtatgccggcaacagattctcttagtgcgtcctcactggagatca
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179487223 499 - 180051392 tggaatgctgggatcttgtccccaccgaggccccttcactgtgccctttgtcacagtcattgtatcacgtctgcacatattgaaaattccaccacacaatgttgttcattgtcactttcaacaatcatatgtactttaaagactcatctacatgctgtctacaagaaatccattttaaatgtaatgatatagactgtttcacagtaaaaggatgggaaaagacctatcagaccaacatcagttacacaaaaatcctcaaacagctctattcatgttggacaaaatagactcagagcaag-aaagtcactcggggtaaagaggagaacaatagtatgctgtgtttccttggatatttactgcttgtcttgccctttcttccttcttggggttgtaggttttcctctggtatcttccctcaggctgaagtactttgctttagtatcttttaaaccaggtgtcctggctacaaattatcttagtgcatcctcactggagaacg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181218425 499 - 181584905 tggaatgctgggatcttgtccccaccgaggccccttcactgtgccctttgtcacagtcattgtatcacgtctgcacatattgaaaattccaccacacaatgttgttcattgtcactttcaacaatcatatgtactttaaagactcatctacatgctgtctacaagaaatccattttaaatgtaatgatatagactgcttcacagtaaaaggatgggaaaagacctatcagaccaacatcagttacacaaaaatcctcaaacagctctattcatgttggacaaaatagactcagagcaag-aaagtcactcggggtaaagaggagaacaatagtatgctgtgtttccttggatatttactgcttgtcttgccctttcttccttcttggggttgtaggttttcctctggtatcttccctcaggctgaagtactttgctttagtatcttttaaaccaggtgtcctggctacaaattatcttagtgcatcctcactggagaacg
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90536944 498 -  91010382 tggaatgctgggatcttgtccccaccaaggccccttcactgtgccctttgtcacagtcactgtatcacgtctgcacatattgaaaattccaccacacaatgttgttctgtgtcactttcaaccatcatatgtacttcaaagactcatctacatgctgtctacaagaaatccattttaaatg-aattatatagactgtttcacagtaaaaggatgggaaaagacctatcagaccaacatcagttacacaaaaatcctcagacagctctattcatgttggacaaaatagactcagagcaagaaaagtcactcggggtaaagaggagaacaatagtatgctgtgtttccttggatatttactgcttgtcttgccctttcttccttcttggggttgtaggttttcctctggtatcttccctcaggctgaagaac-ttgctttagtatcttttaaaccaggtatcctggctacaaattatcttagtgcgtcctcactggagaatg
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      163871 499 -    514179 tggaatgctgggatcttgtccccaccgaggccccttcactgtgccctttgtcgcagtcaccgtatcacgtctgcacatattgaaaattccaccacacaatgttgttcactgtcactttcaaccatcatatgtactttaaagactcatctacatgctgtctacaagaaatccattttaaatgtaatgatatagactgtttcacagtaaaaggatgggaaaagacctatcagaccaacatcagttacacaaaaatcctcaaacagctctattcacgctagacaaaatagactcagaacaggaaaagtcactcgcggtaaagaggagaacaatagtgtgctgtatttccttggctatttaccgcttgtcttgccctttcttccttcttggggttgtaggttttcctctggtatcttccctcaggctgaagaac-ttgctttggcatcttttaaaccaggtgtcctggctacaaattatcttagtgcatcctcactagagaacg
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15974719 484 +  16417988 tgtaacgctgggtcctcgcccccaccaaggcccctctgctgcactctttgtcggagtcattgcatggcatctgcacatgttgaaaattccaccacgcgatgtt-ttcattgtcgctttcaaccatcatatgtactttaaagaCTCA-----------tctgcaagaaacccattttaaatgtaatgatacag-ctgtttcacagtacaaggatgggaaaagacccgctagatcaacatcagttacacaaaaatcctcaaacaactctattcatgtcagacaaaatagactcagagcaagaaaagtcactgggggt--agaggagagcagcagtgtgctgtgtttacttggactttcactgcttgtcatgccctttcttccctgttggggttgtgggttttcctctggtatcgtccctcagcctgaagaac-ttgctttagcatcctttacagcaggtgtcctggctacagattcgcttagtgcgtcctcactggagaaca
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       54806 482 +    298490 tgaaatgctgggtcctggtccccaccaaggtcccttta-tgcaccctttgtcggagtcattgcatggcatctgcacatgtcgaaaatttcaccacacaatgtt-ttcattgtcgttttcaaccatcatatgtactttaaagaCTCA-----------tctgcaagaaacccattttaaatgtaacgatacag-ctgtttcacagtaaaaggatgggaaaagacctgccaggccaacatcagttacacaaaaatcctcagacagctctattcatgtcagacaaaatagactcagagcaagaaaagtcgctgggggtaaagaagagagcagcagtgtgctctgtttacttggattttcactgcttgtcatgtcctttcatcc---ttggggaagtggattttcctctggtatcatccctcagcctgaagcac-ttgctttagcatcctttaaagcaggtgtcctggctacagattcgcttagtgcatcctcactggagaaca
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120532884 719 - 121039945 M
e manLeu1.NW_012110441v1      123837 3559 -    438239 I
e cerAty1.NW_012009470v1      228288 4044 -  16742782 I
e macNem1.NW_012012389v1      210640 3886 -   1764207 I

a score=226.000000
s hg38.chr5_KI270793v1_alt     31626 3 +    126136 tca-
s panTro5.chr5             181299125 3 - 181907262 tca-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019507 3 - 183735486 tca-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110032 3 +    698298 tca-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179487722 3 - 180051392 tca-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181218924 3 - 181584905 tca-
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      232332 3 -  16742782 TCA-
i cerAty1.NW_012009470v1   I 4044 C 0
s chlSab2.chr4              90537442 3 -  91010382 tct-
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      164370 3 -    514179 tca-
i colAng1.NW_012118799v1   C 0 I 288
s saiBol1.JH378155          15975203 3 +  16417988 -tgg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       55288 3 +    298490 -cgg
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120532884 719 - 121039945 M
e manLeu1.NW_012110441v1      123837 3559 -    438239 I
e macNem1.NW_012012389v1      210640 3886 -   1764207 I

a score=100879.000000
s hg38.chr5_KI270793v1_alt     31629 18 +    126136 atttttctttcatttccg
s panTro5.chr5             181299128 18 - 181907262 atttttccttcgtttccg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019510 18 - 183735486 atttttctttcgtttccg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110035 18 +    698298 atttttctttcatttccg
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179487725 18 - 180051392 atttttctttcacttccg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181218927 18 - 181584905 atttttctttcacttccg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214526 18 -   1764207 ATTTTTCCTTCTTTTCTG
i macNem1.NW_012012389v1   I 3886 C 0
s cerAty1.NW_012009470v1      232335 18 -  16742782 ATTTTTCCTTCTTTTCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90537445 18 -  91010382 atttttctttcacttccg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127396 18 -    438239 ATTTTTCCTTCTTTTCTG
i manLeu1.NW_012110441v1   I 3559 C 0
s colAng1.NW_012118799v1      164661 18 -    514179 ATTTTTCCTTCATTTCTG
i colAng1.NW_012118799v1   I 288 C 0
s saiBol1.JH378155          15975206 18 +  16417988 attttgcctccacttctg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       55291 18 +    298490 attttgcctccatttctg
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120532884 719 - 121039945 M

a score=42159.000000
s hg38.chr5_KI270793v1_alt     31647 5 +    126136 aaggg
s panTro5.chr5             181299146 5 - 181907262 aaggg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019528 5 - 183735486 aaggg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110053 5 +    698298 aaggg
i gorGor5.CYUI01015805v1   C 0 I 271
s nomLeu3.chr6             120533603 5 - 121039945 AAGGG
i nomLeu3.chr6             M 719 C 0
s rheMac8.chr6             179487743 5 - 180051392 aaggg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181218945 5 - 181584905 aaggg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214544 5 -   1764207 AAGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232353 5 -  16742782 AAGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90537463 5 -  91010382 aaggg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127414 5 -    438239 AAGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164679 5 -    514179 AAGGG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15975224 5 +  16417988 aaggg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       55309 5 +    298490 aaggg
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=44901.000000
s hg38.chr5_KI270793v1_alt     31652 6 +    126136 tgttct
s panTro5.chr5             181299151 6 - 181907262 tgttct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019533 6 - 183735486 tgttct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110329 6 +    698298 TGTTCT
i gorGor5.CYUI01015805v1   I 271 C 0
s nomLeu3.chr6             120533608 6 - 121039945 TGTTCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179487748 6 - 180051392 tattct
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181218950 6 - 181584905 tattct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214549 6 -   1764207 TGTTCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232358 6 -  16742782 TGTTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90537468 6 -  91010382 tattct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127419 6 -    438239 TATTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164684 6 -    514179 TATTCT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15975229 6 +  16417988 tgttct
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       55314 6 +    298490 tattct
i cebCap1.NW_016108158v1   C 0 I 4
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=1569.000000
s hg38.chr5_KI270793v1_alt     31658 1 +    126136 c
s panTro5.chr5             181299157 1 - 181907262 c
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019539 1 - 183735486 c
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110335 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533614 1 - 121039945 C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179487754 1 - 180051392 c
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181218956 1 - 181584905 c
i macFas5.chr6             C 0 I 216
s macNem1.NW_012012389v1      214555 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232364 1 -  16742782 T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90537474 1 -  91010382 c
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127425 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164690 1 -    514179 C
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15975235 1 +  16417988 t
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=-2885.000000
s hg38.chr5_KI270793v1_alt     31659 3 +    126136 gc-G
s panTro5.chr5             181299158 3 - 181907262 ac-G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019540 3 - 183735486 ac-G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110336 3 +    698298 AC-G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533615 4 - 121039945 GCAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179487755 3 - 180051392 CC-C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219173 3 - 181584905 GC-A
i macFas5.chr6             I 216 C 0
s macNem1.NW_012012389v1      214556 3 -   1764207 GT-G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232365 3 -  16742782 GT-G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90537475 3 -  91010382 CC-C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127426 3 -    438239 GC-A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164691 3 -    514179 AC-A
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15975236 3 +  16417988 gt-g
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=9977.000000
s hg38.chr5_KI270793v1_alt     31662 2 +    126136 TC
s panTro5.chr5             181299161 2 - 181907262 TC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019543 2 - 183735486 TC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110339 2 +    698298 TC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533619 2 - 121039945 TC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179487758 2 - 180051392 TT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219176 2 - 181584905 TC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214559 2 -   1764207 TC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232368 2 -  16742782 TC
i cerAty1.NW_012009470v1   C 0 I 179
s chlSab2.chr4              90537478 2 -  91010382 TT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127429 2 -    438239 TC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164694 2 -    514179 TC
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=91991.000000
s hg38.chr5_KI270793v1_alt     31664 18 +    126136 G-ATTTTTCCTTCGTTTCC
s panTro5.chr5             181299163 18 - 181907262 G-ATTTTTCCTTCATTTCC
i panTro5.chr5             C 0 I 36
s panPan2.chr5             183019545 18 - 183735486 G-ACTTTTCCTTCGTTTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110341 18 +    698298 G-ATTTTTCCTTCATTTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533621 19 - 121039945 GAATTTTTCCTTCATTTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179487760 18 - 180051392 G-ATTTTTCCTCCATTTCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219178 18 - 181584905 G-ATTTTTCCTTCATTTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214561 18 -   1764207 T-ATTTTTCCTTCGTTTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232549 18 -  16742782 G-ATTTTTCCTTCTTTTCC
i cerAty1.NW_012009470v1   I 179 C 0
s chlSab2.chr4              90537480 18 -  91010382 G-ATTTTTCCTCCATTTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127431 18 -    438239 G-ATTTTTCCTTCATTTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164696 18 -    514179 A-ATTTTTCCTCCATTTCC
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320  4 +    298490 I
e saiBol1.JH378155          15975239  0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=3036.000000
s hg38.chr5_KI270793v1_alt     31682 1 +    126136 G
s panTro5.chr5             181299217 1 - 181907262 G
i panTro5.chr5             I 36 C 0
s panPan2.chr5             183019563 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110359 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533640 1 - 121039945 G
i nomLeu3.chr6             C 0 T 38
s rheMac8.chr6             179487778 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219196 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214579 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232567 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90537498 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127449 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164714 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=232903.000000
s hg38.chr5_KI270793v1_alt     31683 49 +    126136 AAGGGTGTTCTCGC-ATCG-ATTTTTCTTTCGTTTCCGAAGGGTGTTCTCG
s panTro5.chr5             181299218 49 - 181907262 AAGGGTGTTCTCGC-ATCG-ATTTTTCCTTCGTTTCCGAAGGGTGTTCTCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019564 49 - 183735486 AAGGGTGTTCTCAC-GTCG-ACTTTTCCTTCATTTCCGAAGGGTGTTCTCG
i panPan2.chr5             C 0 I 36
s gorGor5.CYUI01015805v1      110360 49 +    698298 AAGGGTGTTCTCGT-GTTG-ATTTTTCCTTCATTTCCGAAGGGTGTTCTTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533603 51 - 121039945 AAGGGTGTTCTCGCAATCGAATTTTTCCTTCATTTCCGAAGGGTGTTCTCG
i nomLeu3.chr6             T 38 C 0
s rheMac8.chr6             179487779 49 - 180051392 AAGGGCATTCACAC-ATCA-ATTTTTCCTTCATTTCCAAAGGGTGTTCTCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219197 49 - 181584905 AAGGGTATTCTCAC-CTCG-ATTTTTCCTTCATTTCTGAAGGGTATTCTCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214580 48 -   1764207 AAGGGTATTCTCGC-CTCG-ATTTGTCCTCCATTTCCT-AGGGTGTTCTCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232568 49 -  16742782 AAGGGTGTTCTCAC-ATCA-ATTTTTCCTTCATTTCCAAAGGGTATTCTCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90537499 49 -  91010382 AAGGGTATTCGCAC-ATCG-ATTTTTCCTTCATTTCCAAAGGGTATTCTTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127450 49 -    438239 AAAGGTATTCTCAC-TTCG-ATTTTTCCTCCATTTCCAAAGGGTATTCTCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164715 49 -    514179 AAGGGTATTCTCAC-CTCG-ATTTTTCCTCCATTTCCGAAGGGTATTCTCA
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320  4 +    298490 I
e saiBol1.JH378155          15975239  0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=51712.000000
s hg38.chr5_KI270793v1_alt     31732 11 +    126136 CGTCGACTTTT
s panTro5.chr5             181299267 11 - 181907262 CATCGATTTTT
i panTro5.chr5             C 0 T 97
s panPan2.chr5             183019649 11 - 183735486 CGTTGATTTTT
i panPan2.chr5             I 36 C 0
s gorGor5.CYUI01015805v1      110409 11 +    698298 CGTTGATTTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533654 11 - 121039945 CGTCGATTTTT
i nomLeu3.chr6             C 0 I 1
s rheMac8.chr6             179487828 11 - 180051392 TGTCGATTTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219246 11 - 181584905 CCTCAATTTTT
i macFas5.chr6             C 0 I 576
s macNem1.NW_012012389v1      214628 11 -   1764207 CCTCGATTTTT
i macNem1.NW_012012389v1   C 0 I 217
s cerAty1.NW_012009470v1      232617 11 -  16742782 CCTCGATTTTT
i cerAty1.NW_012009470v1   C 0 I 289
s chlSab2.chr4              90537548 11 -  91010382 CCTCGATTTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127499 11 -    438239 CCTCGATTTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164764 11 -    514179 CCTCAATTTTT
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320  4 +    298490 I
e saiBol1.JH378155          15975239  0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=4500.000000
s hg38.chr5_KI270793v1_alt     31743 1 +    126136 C
s panPan2.chr5             183019660 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120533666 1 - 121039945 C
i nomLeu3.chr6             I 1 C 0
s rheMac8.chr6             179487839 1 - 180051392 C
i rheMac8.chr6             C 0 I 109
s macFas5.chr6             181219833 1 - 181584905 C
i macFas5.chr6             I 576 C 0
s macNem1.NW_012012389v1      214856 1 -   1764207 C
i macNem1.NW_012012389v1   I 217 C 0
s cerAty1.NW_012009470v1      232917 1 -  16742782 C
i cerAty1.NW_012009470v1   I 289 C 0
s chlSab2.chr4              90537559 1 -  91010382 C
i chlSab2.chr4             C 0 I 1153
s manLeu1.NW_012110441v1      127510 1 -    438239 C
i manLeu1.NW_012110441v1   C 0 I 1
s colAng1.NW_012118799v1      164775 1 -    514179 C
i colAng1.NW_012118799v1   C 0 I 1
e panTro5.chr5             181299278 97 - 181907262 T
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e gorGor5.CYUI01015805v1      110420 0 +    698298 C

a score=30415.000000
s hg38.chr5_KI270793v1_alt     31744 9 +    126136 TTCATTTCT
s panPan2.chr5             183019661 6 - 183735486 ---ATTTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110420 7 +    698298 --CATTTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533667 9 - 121039945 TTCATTTCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179487949 9 - 180051392 TTCTTTTCT
i rheMac8.chr6             I 109 C 0
s macFas5.chr6             181219834 9 - 181584905 TTCTTTTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214857 9 -   1764207 TTCTTTTCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232918 9 -  16742782 TCCATTTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90538713 9 -  91010382 TTCATTTCT
i chlSab2.chr4             I 1153 C 0
s manLeu1.NW_012110441v1      127512 9 -    438239 TTCATTTCT
i manLeu1.NW_012110441v1   I 1 C 0
s colAng1.NW_012118799v1      164777 9 -    514179 TTCATGTCT
i colAng1.NW_012118799v1   I 1 C 0
e panTro5.chr5             181299278 97 - 181907262 T
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=150374.000000
s hg38.chr5_KI270793v1_alt     31753 30 +    126136 GAAGGGTGTTCTCGCGTCGATTTTTCCTTC
s panTro5.chr5             181299181 30 - 181907262 GAAGGGTGTTCTCACGTCGACTTTTCCTTC
i panTro5.chr5             T 97 T 30
s panPan2.chr5             183019667 30 - 183735486 GAAGGGTGTTCTCGCATCGATTTTTCCTTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110427 30 +    698298 GAAGGGTGTTCTCACATCGATTTTTCCTTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533676 30 - 121039945 GAAGGGTGTTCTCGTGTCGATttttccttc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179487958 30 - 180051392 GAAGGATATTCTGGCATCGATTTTTCCTTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219843 30 - 181584905 GAAAGGTATTCTCATCTCGATTTTTCCTTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214866 30 -   1764207 GAAAGGTATTCTCATCTCGATTTTTCCTTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232927 30 -  16742782 GTAGGGTGTTCTCGCCTCGATTTTTCCTTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90538722 30 -  91010382 GAAGGGTGTTCTCGCGTCAATTTTTCCTTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127521 30 -    438239 GAAGGGTATTCTCGCCTCAATTTTTCCTTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164786 30 -    514179 GAAGGGTGTTCTCATGTCAATTTTCCCTCC
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320  4 +    298490 I
e saiBol1.JH378155          15975239  0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=23934.000000
s hg38.chr5_KI270793v1_alt     31783 6 +    126136 ATTTCC
s panPan2.chr5             183019697 6 - 183735486 GTTTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110457 6 +    698298 ATTTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533706 6 - 121039945 atttct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179487988 6 - 180051392 ATTTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219873 6 - 181584905 ATTTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214896 6 -   1764207 ATTTCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232957 6 -  16742782 ATTTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90538752 6 -  91010382 TTTTCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127551 6 -    438239 ATTTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164816 6 -    514179 ATTTCC
i colAng1.NW_012118799v1   C 0 C 0
e panTro5.chr5             181299211 30 - 181907262 T
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=73415.000000
s hg38.chr5_KI270793v1_alt     31789 14 +    126136 GAAGGGTGTTCTCA
s panTro5.chr5             181299181 14 - 181907262 GAAGGGTGTTCTCA
i panTro5.chr5             T 30 C 0
s panPan2.chr5             183019703 14 - 183735486 GAAGGGTGTTCTCG
i panPan2.chr5             C 0 T 104
s gorGor5.CYUI01015805v1      110463 14 +    698298 GAAGGGTGTTCTCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533712 14 - 121039945 gaagggtgttcttg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179487994 14 - 180051392 GAAGGGTATTCTCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219879 14 - 181584905 GAAGGGTATTCTCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214902 14 -   1764207 GAAGGGTATTCTCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232963 14 -  16742782 GAAGGGTATTCTTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90538758 14 -  91010382 TAAGGGTGTTCTCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127557 14 -    438239 GAAGGGTGTTCTCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164822 14 -    514179 AAAGGGTATTCTCA
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320  4 +    298490 I
e saiBol1.JH378155          15975239  0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=118525.000000
s hg38.chr5_KI270793v1_alt     31803 25 +    126136 CGTCGACTTTTCCTTCATTTCCGAA
s panTro5.chr5             181299195 25 - 181907262 CGTCGACTTTTCCTTCATTTCTGAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019613 25 - 183735486 CGTCGACTTTTCCTTCATTTCTGAA
i panPan2.chr5             T 104 C 0
s gorGor5.CYUI01015805v1      110477 25 +    698298 TGTTGATTTTTCCTTCATTTCCGAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533726 25 - 121039945 cgtcgatttttcctccatttctgaa
i nomLeu3.chr6             C 0 T 148
s rheMac8.chr6             179488008 25 - 180051392 CCTCGATTTTTCCTTCATTTCTGAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219893 25 - 181584905 AGTCGATTTTTCCTCCACTTCCGAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214916 25 -   1764207 AGTCGATTTTTCCTCCACTTCCGAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      232977 25 -  16742782 AGTCGATTTTCCCTTCGTTTCCGAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90538772 25 -  91010382 TGTCGATTTTTCCTTCTTTTCCAAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127571 25 -    438239 TGTCAATTTTCCCTCCATTTCCAAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164836 25 -    514179 CGTCAATTTTTCCTCCATTTCCGAA
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320  4 +    298490 I
e saiBol1.JH378155          15975239  0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=22985.000000
s hg38.chr5_KI270793v1_alt     31828 5 +    126136 GGGTG
s panTro5.chr5             181299220 5 - 181907262 GGGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019638 5 - 183735486 GGGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110502 5 +    698298 GGGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179488033 5 - 180051392 GGGTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219918 5 - 181584905 GGGTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214941 5 -   1764207 GGGTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      233002 5 -  16742782 GGGTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90538797 5 -  91010382 GGGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127596 5 -    438239 GGGTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      164861 5 -    514179 GGGTG
i colAng1.NW_012118799v1   C 0 I 574
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533751 148 - 121039945 T

a score=28370.000000
s hg38.chr5_KI270793v1_alt     31833 7 +    126136 TTCTCAC
s panTro5.chr5             181299225 7 - 181907262 TTCTCGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019643 7 - 183735486 TTCTCGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110507 7 +    698298 TTCTCGC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179488038 7 - 180051392 TTCTCGC
i rheMac8.chr6             C 0 I 431
s macFas5.chr6             181219923 7 - 181584905 TTCTCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214946 7 -   1764207 TTCTCAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      233007 7 -  16742782 TTCTCAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90538802 7 -  91010382 TTCTCGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127601 7 -    438239 GCCTCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      165440 7 -    514179 TTCTCAC
i colAng1.NW_012118799v1   I 574 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533751 148 - 121039945 T

a score=33796.000000
s hg38.chr5_KI270793v1_alt     31840 8 +    126136 GTTGATTT
s panTro5.chr5             181299232 8 - 181907262 ATCGATTT
i panTro5.chr5             C 0 T 29
s panPan2.chr5             183019650 8 - 183735486 GTTGATTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110514 8 +    698298 GTTGATTT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179488476 8 - 180051392 GTTGATTT
i rheMac8.chr6             I 431 C 0
s macFas5.chr6             181219930 8 - 181584905 GTTGATTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214953 8 -   1764207 GTTGATTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      233014 8 -  16742782 GTTGATTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90538809 8 -  91010382 ATCGATTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127608 8 -    438239 CTCGATTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      165447 8 -    514179 GTTGATTT
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533751 148 - 121039945 T

a score=8190.000000
s hg38.chr5_KI270793v1_alt     31848 2 +    126136 TT
s panPan2.chr5             183019658 2 - 183735486 TT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110522 2 +    698298 TT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179488484 2 - 180051392 TT
i rheMac8.chr6             C 0 I 4
s macFas5.chr6             181219938 2 - 181584905 TT
i macFas5.chr6             C 0 I 4
s macNem1.NW_012012389v1      214961 2 -   1764207 TT
i macNem1.NW_012012389v1   C 0 I 4
s cerAty1.NW_012009470v1      233022 2 -  16742782 TT
i cerAty1.NW_012009470v1   C 0 I 4
s chlSab2.chr4              90538817 2 -  91010382 TT
i chlSab2.chr4             C 0 I 75
s manLeu1.NW_012110441v1      127616 2 -    438239 TT
i manLeu1.NW_012110441v1   C 0 I 256
s colAng1.NW_012118799v1      165455 2 -    514179 TT
i colAng1.NW_012118799v1   C 0 I 4
e panTro5.chr5             181299240 29 - 181907262 T
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533751 148 - 121039945 T

a score=4500.000000
s hg38.chr5_KI270793v1_alt     31850 1 +    126136 C
s panPan2.chr5             183019660 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110524 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179488490 1 - 180051392 C
i rheMac8.chr6             I 4 C 0
s macFas5.chr6             181219944 1 - 181584905 C
i macFas5.chr6             I 4 C 0
s macNem1.NW_012012389v1      214967 1 -   1764207 C
i macNem1.NW_012012389v1   I 4 C 0
s cerAty1.NW_012009470v1      233028 1 -  16742782 C
i cerAty1.NW_012009470v1   I 4 C 0
s chlSab2.chr4              90538894 1 -  91010382 C
i chlSab2.chr4             I 75 C 0
s manLeu1.NW_012110441v1      127874 1 -    438239 C
i manLeu1.NW_012110441v1   I 256 C 0
s colAng1.NW_012118799v1      165461 1 -    514179 C
i colAng1.NW_012118799v1   I 4 C 0
e panTro5.chr5             181299240 29 - 181907262 T
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533751 148 - 121039945 T

a score=28400.000000
s hg38.chr5_KI270793v1_alt     31851 7 +    126136 ATTTCTG
s panTro5.chr5             181299211 7 - 181907262 ATTTCTG
i panTro5.chr5             T 29 C 0
s panPan2.chr5             183019661 7 - 183735486 ATTTCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110525 7 +    698298 ATTTCCG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179488491 7 - 180051392 ATTTCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219945 7 - 181584905 ATTTCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214968 7 -   1764207 ATTTCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      233029 7 -  16742782 ATTTCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90538895 7 -  91010382 ATTTCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127875 7 -    438239 ATTTCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      165462 7 -    514179 ATTTCTG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533751 148 - 121039945 T

a score=432121.000000
s hg38.chr5_KI270793v1_alt     31858  96 +    126136 AAGGGTGTTCTCGC-ATCG-ATTTTTCCTTCGTTTCCAAAGGGTGTTC----------------------------TCGCATTGATTTTTCCTTCATTTCTGAAGGGTATTCTCGTGTTGATTTTT
s panTro5.chr5             181299218  96 - 181907262 AAGGGTGTTCTCGC-ATCG-ATTTTTCCTTCGTTTCCGAAGGGTGTTC----------------------------TCGCATCGATTTTTCCTTCGTTTCTGAAGGGTGTTCTCGTGTTGATTTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019668  96 - 183735486 AAGGGTGTTCTCGC-ATCG-ATTTTTCCTTCGTTTCTGAAGGGTGTTC----------------------------TCGCATCGATTTTTCCTTCGTTTCTGAAGGGTATTCTCGTGTTGATTTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110532 123 +    698298 AAGGGTGTTCTCAC-GTCG-ACTTTTCCTTCATTTCCGAAGGGTGTTCTCGCGTTGATTTTCATTTCTGAAGGGTTTCGCATTGATTTTTCCTTCATTTCTGAA-GGTATTCTCGTGTTGATTTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533603  98 - 121039945 AAGGGTGTTCTCGCAATCGAATTTTTCCTTCATTTCCGAAGGGTGTTC----------------------------TCGCGTCGATTTTTCCTTCATTTCTGAAGGGTGTTCTCGTGTCGATtttt
i nomLeu3.chr6             T 148 C 0
s rheMac8.chr6             179488498  96 - 180051392 AAGGATATTCTCGC-CTTG-ATTTTTCCTTCTTTTCCAAAGGGTGTTC----------------------------TCACATCAATTTTTCCTTCATTTCCAAAGGGTATTCTCGCCTTGATTTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181219952  96 - 181584905 AAGGGTGTTCTTGC-ATCG-ATTTTTCCTTCTTTTCTAAAAGGTGTTC----------------------------TCATGTCGATTTTTCCTTCTTTTCTGAAGGGTATTCTGGCATCGATTTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      214975  96 -   1764207 AAGGGTGTTCTTGC-ATCG-ATTTTTCCTTCTTTTCTAAAAGGTGTTC----------------------------TCAAGTCGATTTTTCCTTCTTTTCTGAAGGGTATTCTGGCATCGATTTTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      233036  96 -  16742782 AAGGGTATTCTCGC-CTTG-ATTTTTCCTTCTTTTCCAAAGGGTGTTC----------------------------TCACATCAATTTTTCCTTCATTTCCGAAGGGTATTCTCGCCTTGATTTTT
i cerAty1.NW_012009470v1   C 0 I 409
s chlSab2.chr4              90538902  85 -  91010382 AAGGGTGTTCTTGC-ATCG-ATTTTTCCTTAATTTCTGAAGGGT---------------------------------------GATTTTTCTTTCATTTCTAAAGGGTATTCTCACCTCGATTTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127882  95 -    438239 -AGGGTGTTCTCGC-CTCG-ATTTTTCCTTCATTTCTGAAGGGTATTC----------------------------TTGAGTCGATTTTCCCTTCATTTCTGAAGGGTATTCTTGTGTCGATTTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      165469  96 -    514179 AAGGGTGTTCTCAC-GCTG-ATTTTTCCTCCATTTCCAAAGGGTGTTC----------------------------TCGCATCAATTTTTCCTTCTTTTCCGAAGGGTGTTCTCATGTCAATTTTT
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320   4 +    298490 I
e saiBol1.JH378155          15975239   0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=31592.000000
s hg38.chr5_KI270793v1_alt     31954 12 +    126136 AATTCATTTCTG
s panTro5.chr5             181299314 12 - 181907262 TCTTCATTTCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019764 12 - 183735486 TCTTCATTTCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110655 12 +    698298 TCTTCATTTCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533701  4 - 121039945 cctt--------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179488594 12 - 180051392 CCTCCATTTCCG
i rheMac8.chr6             C 0 I 382
s macFas5.chr6             181220048 12 - 181584905 CCTCCATTTCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      215071 12 -   1764207 CCTCCATTTCTG
i macNem1.NW_012012389v1   C 0 I 130
s chlSab2.chr4              90538987 12 -  91010382 CCTTCTTTTCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127977 12 -    438239 CCTCCATTTCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      165565 12 -    514179 CCTTCTTTTCTG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320  4 +    298490 I
e saiBol1.JH378155          15975239  0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e cerAty1.NW_012009470v1      233132 409 -  16742782 I

a score=25785.000000
s hg38.chr5_KI270793v1_alt     31966 6 +    126136 AAGGGT
s panTro5.chr5             181299326 6 - 181907262 AAGGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019776 6 - 183735486 AAGGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110667 6 +    698298 AAGGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179488988 6 - 180051392 AAGGGT
i rheMac8.chr6             I 382 C 0
s macFas5.chr6             181220060 6 - 181584905 AAGGGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      215213 6 -   1764207 AAGGGT
i macNem1.NW_012012389v1   I 130 C 0
s chlSab2.chr4              90538999 6 -  91010382 AAGGGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127989 6 -    438239 AAGGGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      165577 6 -    514179 AAGGGT
i colAng1.NW_012118799v1   C 0 I 44
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533705 0 - 121039945 C
e cerAty1.NW_012009470v1      233132 409 -  16742782 I

a score=8852.000000
s hg38.chr5_KI270793v1_alt     31972 3 +    126136 ATT
s panTro5.chr5             181299332 3 - 181907262 ATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019782 3 - 183735486 ATT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110673 3 +    698298 ATT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179488994 3 - 180051392 ATT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181220066 3 - 181584905 GTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      215219 3 -   1764207 ATT
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90539005 3 -  91010382 ATT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      127995 3 -    438239 ATT
i manLeu1.NW_012110441v1   C 0 I 964
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533705 0 - 121039945 C
e cerAty1.NW_012009470v1      233132 409 -  16742782 I
e colAng1.NW_012118799v1      165583 44 -    514179 I

a score=6964.000000
s hg38.chr5_KI270793v1_alt     31975 4 +    126136 TTCG
s panTro5.chr5             181299335 4 - 181907262 TTCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019785 4 - 183735486 TTCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110676 4 +    698298 TTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179488997 4 - 180051392 CTCG
i rheMac8.chr6             C 0 I 2
s macFas5.chr6             181220069 4 - 181584905 CTTG
i macFas5.chr6             C 0 I 2
s macNem1.NW_012012389v1      215222 4 -   1764207 CTCG
i macNem1.NW_012012389v1   C 0 I 2
s chlSab2.chr4              90539008 4 -  91010382 CTCG
i chlSab2.chr4             C 0 I 2
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533705 0 - 121039945 C
e manLeu1.NW_012110441v1      127998 964 -    438239 I
e cerAty1.NW_012009470v1      233132 409 -  16742782 I
e colAng1.NW_012118799v1      165583 44 -    514179 I

a score=1000.000000
s hg38.chr5_KI270793v1_alt     31979 1 +    126136 G
s panTro5.chr5             181299339 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019789 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110680 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s colAng1.NW_012118799v1      165627 1 -    514179 G
i colAng1.NW_012118799v1   I 44 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533705 0 - 121039945 C
e manLeu1.NW_012110441v1      127998 964 -    438239 I
e chlSab2.chr4              90539012 2 -  91010382 I
e cerAty1.NW_012009470v1      233132 409 -  16742782 I
e macNem1.NW_012012389v1      215226 2 -   1764207 I
e macFas5.chr6             181220073 2 - 181584905 I
e rheMac8.chr6             179489001 2 - 180051392 I

a score=32830.000000
s hg38.chr5_KI270793v1_alt     31980 8 +    126136 TCGATTtt
s panTro5.chr5             181299340 8 - 181907262 TCGATTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019790 8 - 183735486 TCGATTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110681 8 +    698298 TCGATTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179489003 8 - 180051392 TCGATTTG
i rheMac8.chr6             I 2 I 3
s macFas5.chr6             181220075 8 - 181584905 TCGATTTT
i macFas5.chr6             I 2 I 133
s macNem1.NW_012012389v1      215228 8 -   1764207 TCGATTTG
i macNem1.NW_012012389v1   I 2 I 3
s cerAty1.NW_012009470v1      233541 8 -  16742782 TCGATTTG
i cerAty1.NW_012009470v1   I 409 I 3
s chlSab2.chr4              90539014 8 -  91010382 TCGATTTG
i chlSab2.chr4             I 2 I 3
s manLeu1.NW_012110441v1      128962 8 -    438239 TCGATTTG
i manLeu1.NW_012110441v1   I 964 I 3
s colAng1.NW_012118799v1      165628 8 -    514179 ACGATTTT
i colAng1.NW_012118799v1   C 0 I 3
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e nomLeu3.chr6             120533705 0 - 121039945 C

a score=124615.000000
s hg38.chr5_KI270793v1_alt     31988 23 +    126136 ttcatttctgaagggtattcttg
s panTro5.chr5             181299348 23 - 181907262 TTCATTTCTGAAGGGTATTCTTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019798 23 - 183735486 TCCATTTCTGAAGGGTATTCTTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110689 23 +    698298 TTCATTTCTGAAGGGTATTCTTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533705 21 - 121039945 --catttctgaagggtgttcttg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179489014 23 - 180051392 TTCATTTCTGAAGGGTATTCTCA
i rheMac8.chr6             I 3 C 0
s macFas5.chr6             181220216 23 - 181584905 TTCATTTCTGAAGGGTATTCTCA
i macFas5.chr6             I 133 C 0
s macNem1.NW_012012389v1      215239 23 -   1764207 TTCATTTCTGAAGGGTATTCTCA
i macNem1.NW_012012389v1   I 3 C 0
s cerAty1.NW_012009470v1      233552 23 -  16742782 TTCATTTCTGAAGGGTATTCTCA
i cerAty1.NW_012009470v1   I 3 C 0
s chlSab2.chr4              90539025 23 -  91010382 TTCATTTCTGAAGGGTATTCTCA
i chlSab2.chr4             I 3 C 0
s manLeu1.NW_012110441v1      128973 23 -    438239 TTCATTTCTGAAGGGTATTCTCA
i manLeu1.NW_012110441v1   I 3 C 0
s colAng1.NW_012118799v1      165639 23 -    514179 TTCTTTTCTGAAGGGTATTCTGG
i colAng1.NW_012118799v1   I 3 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320  4 +    298490 I
e saiBol1.JH378155          15975239  0 +  16417988 C
e calJac3.chr2             203813244 2500 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=2380.000000
s hg38.chr5_KI270793v1_alt     32011 2 +    126136 ca
s panTro5.chr5             181299371 2 - 181907262 CA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019821 2 - 183735486 CA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110712 2 +    698298 CA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533726 2 - 121039945 cg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179489037 2 - 180051392 CC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181220239 2 - 181584905 CC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      215262 2 -   1764207 CC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      233575 2 -  16742782 CC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90539048 2 -  91010382 TG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      128996 2 -    438239 TG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      165662 2 -    514179 CA
i colAng1.NW_012118799v1   C 0 I 202
s calJac3.chr2             203815744 2 + 204313951 ca
i calJac3.chr2             I 2500 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320 4 +    298490 I
e saiBol1.JH378155          15975239 0 +  16417988 C
e canFam3.chr34             11692045 9149 +  42124431 I

a score=199017.000000
s hg38.chr5_KI270793v1_alt     32013 32 +    126136 tcgattttt-cctccatttctgaa----attctcaca
s panTro5.chr5             181299373 33 - 181907262 TCGATtttttcctccatttctgaa----attctcaca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019823 33 - 183735486 TCGATtttttcctccatttctgaa----attctcaca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110714 32 +    698298 TCGattttt-cctccatttctgaa----attctcaca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533728 32 - 121039945 tcgattttt-cctccatttctgaa----attcttgca
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179489039 32 - 180051392 TCGattttt-cctccatttctgaa----attcttgca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181220241 32 - 181584905 TCGattttt-cctccatttctgaa----attcttgca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      215264 32 -   1764207 TCGattttt-cctccatttctgaa----attcttgca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      233577 32 -  16742782 TCGattttt-cctccatttctgaa----attcttgca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90539050 32 -  91010382 TCAattttt-cctccatttctgaa----attcttgca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      128998 32 -    438239 TCGattttt-cccccatttctgaa----attcttgca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      165866 32 -    514179 tcgattttt-cctccatttctgaa----attcttgca
i colAng1.NW_012118799v1   I 202 C 0
s calJac3.chr2             203815746 36 + 204313951 tggattttg-cctccatttccgaagggtattcttgcg
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       55320  4 +    298490 I
e saiBol1.JH378155          15975239  0 +  16417988 C
e canFam3.chr34             11692045 9149 +  42124431 I

a score=446066.000000
s hg38.chr5_KI270793v1_alt     32045 52 +    126136 gatgcacaactctggcttggtgcttcctttggtttcttgttttcaatgttct
s panTro5.chr5             181299406 52 - 181907262 gatgcacaactctggtttggtgcttcctttggtttcttgttttcaatgttct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019856 52 - 183735486 gatgcacaactctggcttggtgcttcctttggtttcttgttttcaatgttct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110746 52 +    698298 gatgcacaactctggcttggtgcttcctttggtttcttgttttcaatgttct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533760 52 - 121039945 gatgcacaactctggcttggtgcttcctttggtttcatgttttcaatgttct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179489071 52 - 180051392 gatgcacaactctggcttggtgcttcctttggtttctcattttcagtgttct
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181220273 52 - 181584905 gatgcacaactctggcttggtgcttcctttggtttctcattttcaatgttct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      215296 52 -   1764207 gatgcacaactctggcttggtgcttcctttggtttctcattttcaatgttct
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      233609 52 -  16742782 gatgcacaactctggcttggtgcttcctttggtttctcattttcaatgttct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90539082 52 -  91010382 gatgcacaactctggcttggtgcttcctttggtttctcattttcaatgttct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      129030 52 -    438239 gatgcacaactctggcttggtgcttcctttggtttctcattttcaatgttct
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      165898 52 -    514179 gatgcacaactctggcttggtgcttcctttggtttctcattttcaatgttct
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203815782 52 + 204313951 gatacacagctccggctgggtgcttccttcggtttgacctttccaaagttct
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15975239 52 +  16417988 gatacacagctctggctgggtgcttcctttggtttgccctttccaaagttct
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       55324 52 +    298490 gatacacagctccggctgggtgcttcctttggtttgccctttccaaagttct
i cebCap1.NW_016108158v1   I 4 C 0
e aotNan1.NW_018503740v1    25382437 3367 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=4954195.000000
s hg38.chr5_KI270793v1_alt     32097 514 +    126136  
s panTro5.chr5             181299458 514 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183019908 514 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      110798 514 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120533812 501 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179489123 515 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181220325 515 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      215348 515 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      233661 515 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90539134 515 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      129082 515 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      165950 508 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203815834 507 + 204313951  
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          15975291 507 +  16417988  
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       55376 510 +    298490  
i cebCap1.NW_016108158v1   C 0 I 1
s aotNan1.NW_018503740v1    25385804 504 -  25620257  
i aotNan1.NW_018503740v1   I 3367 I 1275
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=12279877.000000
s hg38.chr5_KI270793v1_alt     32611 1321 +    126136  
s panTro5.chr5             181299972 1321 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183020422 1321 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      111312 1316 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120534313 1310 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179489638 1307 - 180051392  
i rheMac8.chr6             C 0 I 12
s macFas5.chr6             181220840 1307 - 181584905  
i macFas5.chr6             C 0 I 8
s macNem1.NW_012012389v1      215863 1307 -   1764207  
i macNem1.NW_012012389v1   C 0 I 12
s cerAty1.NW_012009470v1      234176 1315 -  16742782  
i cerAty1.NW_012009470v1   C 0 I 8
s chlSab2.chr4              90539649 1322 -  91010382  
i chlSab2.chr4             C 0 I 12
s manLeu1.NW_012110441v1      129597 1322 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      166458 1321 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203816342 1308 + 204313951  
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          15975799 1300 +  16417988  
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1       55887 1335 +    298490  
i cebCap1.NW_016108158v1   I 1 C 0
s aotNan1.NW_018503740v1    25387583 1277 -  25620257  
i aotNan1.NW_018503740v1   I 1275 C 0
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=-147373.000000
s hg38.chr5_KI270793v1_alt     33932  73 +    126136 tggca--------------------------------------------------------------------------------cccaagagaaa-tgcgactgtag-gtgggtgagcctgggatctgGGTGTAGACAAGCCCGGCTGGCAGCC---------
s panTro5.chr5             181301293 138 - 181907262 TGGCAGCCAAGAGAAATGCGACTGTAGGTGGGTGAGCCAGGGATCTGGGTGT---------------AGACAAGCCCGGCTGGCACCCAAGAGAAA-TGCGACTGTAG-GTGGGTGAGCCTGGGATCTGGGTGTAGACAAGCCCGGCTGGCAGCC---------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183021743 139 - 183735486 TGGCAGCCAAGAGAAATGCGACTGTAGGTGGGTGA---------------GCCAGGGATCTGGGTGTAGACAAGCCCGGCTGGCACCCAAGAGAAATTGCGACTGTAG-GTGGGTGAGCCTGGGATCTGGGTGTAGACAAGCCCGGCTGGCAGCC---------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      112628  73 +    698298 TGGCA--------------------------------------------------------------------------------CCCAAGAGAAA-TGCGACTGTAG-GTGGGTGAGCCTGGGATCTGGGTGTAGACAAGCCCGGCTGGCAGCC---------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120535623  22 - 121039945 tggca--------------------------------------------------------------------------------gccaggagaaa-tgcgac-------------------------------------------------------------
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181222155  35 - 181584905 ------------------------------------------------------------------------------------agggaagagaaa-tgtgactgtag-gtgggtgagcct-------------------------------------------
i macFas5.chr6             I 8 C 0
s cerAty1.NW_012009470v1      235499   4 -  16742782 ------------------------------------------------------------------------------------aggc----------------------------------------------------------------------------
i cerAty1.NW_012009470v1   I 8 C 0
s manLeu1.NW_012110441v1      130919  12 -    438239 ------------------------------------------------------------------------------------------------------ctgtagcgaggg--------------------------------------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      167779  12 -    514179 ------------------------------------------------------------------------------------------------------ccgtagccagga--------------------------------------------------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203817650   9 + 204313951 ------------------------------------------------------------------------------------------------------------------------------------------------------cagtcacca-----
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15977099  14 +  16417988 ------------------------------------------------------------------------------------------------------------------------------------------------------cagtcacaagaaaa
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       57222   9 +    298490 ------------------------------------------------------------------------------------------------------------------------------------------------------cagtcacca-----
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25388860   5 -  25620257 ----------------------------------------------------------------------------------------------------------------------------------------------------------cacca-----
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I
e chlSab2.chr4              90540971  12 -  91010382 I
e macNem1.NW_012012389v1      217170  12 -   1764207 I
e rheMac8.chr6             179490945  12 - 180051392 I

a score=5049407.000000
s hg38.chr5_KI270793v1_alt     34005 543 +    126136  
s panTro5.chr5             181301431 543 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183021882 543 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      112701 543 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120535645 529 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179490957 548 - 180051392  
i rheMac8.chr6             I 12 C 0
s macFas5.chr6             181222190 517 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      217182 548 -   1764207  
i macNem1.NW_012012389v1   I 12 C 0
s cerAty1.NW_012009470v1      235503 548 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90540983 548 -  91010382  
i chlSab2.chr4             I 12 C 0
s manLeu1.NW_012110441v1      130931 548 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      167791 550 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203817659 533 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15977113 513 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       57231 534 +    298490  
i cebCap1.NW_016108158v1   C 0 I 6
s aotNan1.NW_018503740v1    25388865 534 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=215159.000000
s hg38.chr5_KI270793v1_alt     34548 26 +    126136 acacttccctggcgacctgtatgaca
s panTro5.chr5             181301974 26 - 181907262 acacttccctggcgacctgtatgaca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183022425 26 - 183735486 acactcccctggcgacctgtatgaca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      113244 26 +    698298 acacttccctggcgacctgtatgaca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120536174 26 - 121039945 atacttccctggcgacctgtatgaca
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179491505 26 - 180051392 acacttccctggcgacctgtctgaca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181222707 26 - 181584905 acacttccctggcgacctgtctgaca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      217730 26 -   1764207 acacttccctggcgacctgtctgaca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      236051 26 -  16742782 acacttctctggcgacctgtctgaca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90541531 26 -  91010382 acacttcactggtgacctgtatgaca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      131479 26 -    438239 acacttccctggcgacctgtctgaca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      168341 26 -    514179 acacttctctggcgacctgtatgaca
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203818192 25 + 204313951 -cagttccctggagacctgtatgaca
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15977626 25 +  16417988 -cagttccctagagacctgtatgaca
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25389399 25 -  25620257 -cagttccctggagacctgtatgcca
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       57765  6 +    298490 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=5818332.000000
s hg38.chr5_KI270793v1_alt     34574 660 +    126136  
s panTro5.chr5             181302000 660 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183022451 660 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      113270 659 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120536200 582 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179491531 635 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181222733 639 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      217756 639 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      236077 640 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90541557 642 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      131505 639 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      168367 637 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203818217 636 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15977651 647 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       57771 640 +    298490  
i cebCap1.NW_016108158v1   I 6 I 876
s aotNan1.NW_018503740v1    25389424 651 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=47454.000000
s hg38.chr5_KI270793v1_alt     35234 6 +    126136 tgacaa
s panTro5.chr5             181302660 6 - 181907262 cgacaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023111 6 - 183735486 cgacaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      113929 6 +    698298 cgacaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120536782 6 - 121039945 cgacaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179492166 6 - 180051392 caacaa
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181223372 6 - 181584905 caacaa
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      218395 6 -   1764207 caacaa
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      236717 6 -  16742782 caacaa
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542199 6 -  91010382 caacaa
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132144 6 -    438239 caacaa
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      169004 6 -    514179 cgacag
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203818853 6 + 204313951 caacaa
i calJac3.chr2             C 0 I 894
s saiBol1.JH378155          15978298 6 +  16417988 caacaa
i saiBol1.JH378155         C 0 I 3
s aotNan1.NW_018503740v1    25390075 6 -  25620257 tgacaa
i aotNan1.NW_018503740v1   C 0 I 878
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       58411 876 +    298490 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=34728.000000
s hg38.chr5_KI270793v1_alt     35240 5 +    126136 aacaa
s panTro5.chr5             181302666 5 - 181907262 aacaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023117 5 - 183735486 aacag
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      113935 5 +    698298 aacaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120536788 5 - 121039945 aacaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179492172 5 - 180051392 aacaa
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181223378 5 - 181584905 aacaa
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      218401 5 -   1764207 aacaa
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      236723 5 -  16742782 aacaa
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542205 5 -  91010382 aacaa
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132150 5 -    438239 aacaa
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      169010 5 -    514179 aacaa
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15978307 5 +  16417988 aacaa
i saiBol1.JH378155         I 3 I 898
e aotNan1.NW_018503740v1    25390081 878 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       58411 876 +    298490 I
e calJac3.chr2             203818859 894 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=487919.000000
s hg38.chr5_KI270793v1_alt     35245 86 +    126136 cattctttagtacccccaaaagtgcatgctagctcaccagcaatggatccaaaccaataagaaatccctgaagtgccagaaaaaga
s panTro5.chr5             181302671 86 - 181907262 cattctttagtacccccaaaagtgcatgctagctcaccagcaatggatccaaaccaataagaaatccctgaagtgccagaaaaaga
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023122 86 - 183735486 cattctttagtacccccaaaagtgcatgctagctcaccagcaatggatccaaaccaataagaaatccctgaagtgccagaaaaaga
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      113940 86 +    698298 cattctttagtaccctcaaaagagcatgctagctcaccagcaatggatccaaaccaataagaaatccctgaagtgccagaaaaaga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120536793 85 - 121039945 cattctttagtaccc-caaaagggcatgctagctcaccagcaatggatccaaaccaataagaaatccctgaagtgccagaaaaaga
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179492177 86 - 180051392 cattctttaatacccccaaaagatcatgccagctcaccagcaatggatccaaaccagtaagaaatccctgaagtgtcagaaaagga
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181223383 86 - 181584905 cattctttaatacccccaaaagatcatgccagctcaccagcaatggatccaaaccagtaagaaatccctgaagtgtcagaaaagga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      218406 86 -   1764207 cattctttaatacccccaaaagatcatgccagctcaccagcaatggatccaaaccagtaagaaatccctgaagtgtcagaaaagga
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      236728 86 -  16742782 cattctttaatacccccaaaagatcacgccagctcaccagcaatggatccaaaccagtaagaaatccctgaagtgtcagaaaaaga
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542210 86 -  91010382 cattctttagtacccccaaaagatcatgccagctcaccagcaatggacccaaaccagtaagaaatccctgaagtgtcagaaaaaga
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132155 86 -    438239 catcctttaatacccccaaaagatcatgccggctcaccagcaatggatccaaaccagtaagaaatccctgaagtgtcagaaaaaga
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      169015 86 -    514179 cattctttagtacccccaaaagatcatgccagctcaccagcaatggatccaaactggtaagaaatccctgaagtgtcagaaaaaga
i colAng1.NW_012118799v1   C 0 I 320
e aotNan1.NW_018503740v1    25390081 878 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       58411 876 +    298490 I
e saiBol1.JH378155          15978312 898 +  16417988 I
e calJac3.chr2             203818859 894 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=982571.000000
s hg38.chr5_KI270793v1_alt     35331 174 +    126136 attcaaaaggtctattattaagctaatcaaggagttactagagaaaggtgaagtccaactaatgaaatttttaaaaaatgatacaagatttgaagggaaaaatctccagtgaaatagataacataaatagaaatccacatgttagacacactgtagtgaactacagaaaaccaa
s panTro5.chr5             181302757 174 - 181907262 attcaaaaggtctattattaagctaatcaaggagttactagagaaaggtgaagtccaaataatgaaatttttaaaaaatgatacaagatttgaagggaaaaatctccagtgaaatagatagcataaatagaaatccacatgttagacacactgtagtgaaccacagaaaaccaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023208 174 - 183735486 attcaaaagatctattattaagctaatcaaggagttactagagaaaggtgaagtccaactaatgaaatttttaaaaaatgatacaagatttgaagggaaaaatctccagtgaaatagatagcataaatagaaatccacatgttagacacactgtagtgaaatacagaaaaccaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114026 174 +    698298 attcaaaaggtctattattaagctaatcaaggagttactagagaaaggtgaagtccaacttatgaaatttttaaaaaatgatacaagatttgaagggaaaaatctccagtgaaatagatagcataaatagaaaTCCACATGTTAGACGCACTATAGTGATCTACAGAAAACCAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120536878 174 - 121039945 attcaaaaggtctattattaagctaatcaaggagttactagagaaaggtgaagttcaacttacgaaatttttaaaaaatgatacaagatttgaagggaaaaatctccagtgaaataggtaacataaatagaaatccacacgttagacacactatagtgaactacagaaaaccaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179492263 173 - 180051392 attcagaaggtctattattaagctaaccaaggagttactagagaaaggtgaagtccaacttatgaattttttt-aaaatgatacaagatttgaagggaaaaatctccagtgaaatagatagcataaatagaaatccacatgttagacacactacagttaactacagaaagccaa
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181223469 173 - 181584905 attcagaaggtctattattaagctaaccaaggagttactagagaaaggtgaagtccaacttatgaattttttt-aaaatgatacaagatttgaagggaaaaatctccagtgaaatagatagcataaatagaaatccacatgttagacacactacagttaactacagaaagccaa
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      218492 173 -   1764207 attcagaaggtctattattaagctaaccaaggagttactagagaaaggtgaagtccaacttatgaattttttt-aaaatgatacaagatttgaagggaaaaatctccagtgaaatagatagcataaatagaaatccacatgttagacacactacagttaactacagaaagccaa
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      236814 174 -  16742782 attcagaaggtctattattaagctaaccaaggagttactagagaaaggtgaagtccaacttatgaatttttttaaaaatgatacaagatttgaagggaaaaatctccagtgaaatagatagcataaatagaaatccacatgttagacacactacagttaactacagaaagccaa
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542296 174 -  91010382 attcagaaggtctattattaagctaatcaaggagttactagagaaaggtgaagtccaacttatgaaattttttaaaaatgatacaagatttgaagggaaaaatctccagtgaaatagatagcataaatagaaatccacatgttagacacactatagttaactacagaaagccaa
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132241 174 -    438239 attcagaaggtctattattaagctaaccaaggagttactagagaaaggtgaagtccaacttatgaattttttttaaaatgatacaagatttgaagggaaaaatctccagtgaaatagatagcataaatagaaatccacatgttagacacactacagttaactacagaaagccaa
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      169421 172 -    514179 attcagaaggtctattattaagctaatcaaggagttactagagaaaggtgaagtccaacttatgaaattttttaaaaatgatacaagatttgaagggaaaaatctccagtgaaatagatagcacaaatagaaatccac--gttagacacactacaattaactacagaaagccaa
i colAng1.NW_012118799v1   I 320 C 0
e aotNan1.NW_018503740v1    25390081 878 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       58411 876 +    298490 I
e saiBol1.JH378155          15978312 898 +  16417988 I
e calJac3.chr2             203818859 894 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I

a score=2017400.000000
s hg38.chr5_KI270793v1_alt     35505 436 +    126136 aataaaaataaacatcataaaagcaaccagcatacaaagtaagattactttagaaggagcaaaaatttgataga----catccaacttctcagcagaaacaatggaagccagaggacaatgcaataaaatctttaaatggtgtaagaaacaaaaaataactcccagtctaggatattactccaagtaaaaatatcattcaagaacaaagttaaaataaagctatttttataacaaagacaaaagaaaacaaaactgagagaaCCACAAAGATGCTGGCAAAGCAGTAGGGGGAAGAAAACGATCTTTTCAGAAAATGGTCAGTTTTACG-TCTCCTCCCGTGGAGACATGGATGAAATGCAACCTCCACCTGTCATgggcc-ccccctctgagcccc--aagacaacagctaaagctgg-caggtacccctcc--tcagaggtctTG
s panTro5.chr5             181302931 436 - 181907262 aataaaaataaacatcataaaagcaaccagcatacaaagtaagattactttagaaggagcaaaaatttgataga----catccaacttctcagcagaaacaatggaagccagaggacaatgcaataaaatctttaaatggtgtaagaaacaaaaaataactcccagtctaggatattactcccagtaaaaatatcattcaagaacaaagttaaaataaagctatttttataacaaagacaaaagaaaacaaaactgagagaaCCACAAAGATGCTGGCAAAGCAGTAGGGGGAAGAAAACAATCTTTTCAGAAAATGGTCAGTTTTACG-TCTCCTCCCGTGGAGACATGGATGAAATGCAACCTCCACCTGTCATgggca-ccccctctgagcccc--aagacaacagctaaagctgg-caggtacccctcc--tcagaggtctTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023382 436 - 183735486 aataaaaataagcatcataaaagcaaccagcatacaaagtaagattactttagaaggagcaaaaatttgataga----catccaacttctcagcagaaacaatggaagccagaggacaatgcaataaaatctttaaatggtgtaagaaacaaaaaataactcccagtctaggatattactcccagtaaaaatatcattcaagaacaaagttaaaataaagctatttttataacaaagacaaaagaaaacaaaactgagagaaccacaaagatgCTGGCAAAGCAGTAGGGGGAAGAAAACGATCTTTTCAGAAAATGGTCAGTTTTACG-TCTCCTCCTGTGGAGACATGGATGAAATGCAACCTCCACCTGTCATgggca-ccccctctgagccct--aagacaacagctaaagctgg-caggtacccctcc--tcagaggtctTG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120537052 441 - 121039945 aataaaaataagcatcacaaaagcaaccagcatacaaagtaagattactttagaaggagcaaaaatttgatagacatccatccaacttctcaacaaaaacaatggaagccagaggacaatgcaataaaatctttaaatggtgtgagaaagaaaaaataacgcccagcctagcatattactcccagtaaaagtatcattcaagaacaaagtcaaaataaagctatttttttaacaaagacaaaagaaaacaaaaatgagagaaccacaaaGATGCTGGCAAAGCAGTAGGGGGAAGAAAATGATCTTTTCAGAAAATGGTCAGTTTTATG-TCTCCTCCCATGGAGACATGGATGAAATGTAACCTCCACCTGAcatgggccgcccgctctgagcccc--aagacaacagctaaagctgg-caggtgcccctcc--tcagaggtctTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179492436 437 - 180051392 aataaaaataaatatcataaaagcaaccagcatacaaagtaagattactttagaaggagcaaaaatttgataga----catccaacttctcagcagaaacaatggaagccagaggacaatgcaataaaatctttaaatggtgtgagaaagaaaaaataactcccagcctaggatattacaccaagtaaaaatatcattcaagaacaaagttaaaataaagctatttttataacaaagacaaaataaaacaaaactgagagaaccacaaaGATGCTGGCAAAGCAGTAGGGGGA-AAAAACAATCTTTTCAGAAAATGGTCAGTTTTGAGCTCTTCC-TCATGAGGCCATGGATG-AATGCAACCTCCACCTGACATGG--C-CCCCTTCTGGAACCCCGGAGACAACAGCTAAAGCTGGCCAGGTGCCCCTTGGTTCAGAGTTCTTG
i rheMac8.chr6             C 0 I 23
s macFas5.chr6             181223642 434 - 181584905 aataaaaataaatatcataaaagcaaccagcatacaaagtaagattactttagaaggagcaaaaatctgataga----catccaacttctcagcagaaacaatggaagccagaggacaatgcaataaaatctttaaatggtgtgagaaagaaaaaataactcccagcctaggatattacaccaagtaaaaatatcattcaagaacaaagttaaaataaagctatttttataacaaagacaaaataaaacaaaactgagagaaCCACAAAGATGCTGGCAAAGCAGTAGGGGGA-AAAAACAATCTTTTCAGAAAATGGTCAGTTTTATG-TCTCCT-CCATGGAGCCATGGATGAAATGCAACCTCCACCTGACATgggcc-ccccttctgaacccc--gagacaacagctaaagctgg-caggtgccccttg--tcagagttcttg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      218665 434 -   1764207 aataaaaataaatatcataaaagcaaccagcatacaaagtaagattactttagaaggagcaaaaatttgataga----catccaacttctcagcagaaacaatggaagccagaggacaatgcaataaaatctttaaatggtgtgagaaagaaaaaataactcccagcctaggatattacaccaagtaaaaatatcattcaagaacaaagttaaaataaagctatttttataacaaagacaaaataaaacaaaactgagagaaccacaaaGATGCTGGCAAAGCAGTAGGGGGA-AAAAACAATCTTTTCAGAAAATGGTCAGTTTTATG-TCTCCT-CCATGGAGCCATGGATGAAATGCAACCTCCACCTGACATGGGCC-CCCCTTCTGAACCCC--GAGACAACAGCTAAAGCTGG-CAggtgccccttg--tcagagttcttg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      236988 433 -  16742782 aataaaaataaatatcataaaagcaaccagcatacaaagtaagattactttagaaggagcaaaagtttgataga----catccaacttctcagcagaaacaatggaagccagaggacaatgcaataaaatctttaaatggtgtgaaaaagaaaaaataactcctagcctgggatattacacccagtaaaaatatcattcaagaacaaagttaaaataaagctatttttataacaaagacaaaataaaacaaaactgagagaaccacaaaGATGCTGGTAAAGCAGTA-GGGGA-AAAAACAATCTTTTCAGAAAATGGTCAGTTTTATG-TCTCCT-CCATGGAGACGTGGATGAAATGCAACCTCCACCTGACATgggcc-cctcttctgaaccca--gagacaacagctaaagctgg-caggtgcccctcg--tcagagttcttg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542470 435 -  91010382 aataaaaataaatatcataaaagcaaccagcatacaaagtaagattactttagaaggagcaaaaatttgataga----catccaacttctcagcagaaacaatggaagccagaggacaatgcaataaaatctttaaatggtgtgagaaagaaaaaataactcccagcctaggatattacacccagtaaaaatatcattcaagaacaaagttagaataaagctatttttataacaaagacaaaatgaaacaaAACTGAGAGAACCACAAAGATGCTGAAAAAGCAGTAGGGGGAAAAAAACAATCTTTTCAGAAAATGGTCAGTTTTATG-TCTCCT-CCATGGAGACATGGATGAAATGCAACTTCCACCTGACATgggcc-cctcttctgaaccct--gagacaacagctaaagctgg-caggtgcccctcg--tcagagttcttg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132415 432 -    438239 aataaaaataaatatcataaaagcaaccagcatacaaagtaagattactttagaaggagcaaaagtttgataga----catccaacttctcagcagaaacaatggaagccagaggacaatgcaataaaatctttaaatggtgtgaaaaagaaaaaataactcccagcctaggatattacacccagtaaaaatatcattcaagaacaaagttaaaataaagctatttttataacaaagacaaaataaaacaaAACGGAGAGAACCACAAAGATGCTGGTAAAGCAGTAGGGG---AAAAACAATCTTTTCAGAAAATGGTCAGTTTTATG-TCTCCT-CCATGGACACGTGGATGAAATGCAACCTCCACCTGACATgggcc-cctcttctgaaccca--gagacaacagctaaagctgg-caggtgccccttg--tcagagttcttg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      169593 435 -    514179 aataaaaataaatatcataaaagcaaccagcatacaaagtaagattactttagaaggagcaaaaatctgataga----catccaacttctcagcagaaacaatggaagccagaggacaatgcaataaaatctttaaatgatgtgagaaagaaaaaataactcccagcctaggatattacacccagtaaaaatatcattcaagaacaaagttaaaataaagctatttttataacaaagacaaaataaaataaaactgagagaaccacaaaGATGCTGGTAAAGCAGTAGGGGGA-GAAAACAATCTTTTCAGAAAATGGTCAGTTTTATG-TCTCCTCCCATGGAGACATGGATGAAATGCAACCTCCACCTGACATGGGcc-cctcttctgaaccct--gagacaacagctaaagctgg-caggtgcccctcg--tcagagttcttg
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25390081 878 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       58411 876 +    298490 I
e saiBol1.JH378155          15978312 898 +  16417988 I
e calJac3.chr2             203818859 894 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=67396.000000
s hg38.chr5_KI270793v1_alt     35941 18 +    126136 ATTTTAAAATAGTAGTAG
s panTro5.chr5             181303367 18 - 181907262 ATTTTAAAATAGTAGCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023818 18 - 183735486 ATTTTAAAATAGTAGCAG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120537493 18 - 121039945 ATTTTAAAATAGTAGTAG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181224076 18 - 181584905 gttttaaaacagtagtag
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219099 18 -   1764207 gttttaaaacagtagtag
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      237421 18 -  16742782 gttttaaaacagtagtag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542905 18 -  91010382 gttttaaaacagtagtag
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132847 18 -    438239 gttttaaaacagtagtag
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170028 18 -    514179 gttttaaaacagtagtag
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25390081 878 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       58411 876 +    298490 I
e saiBol1.JH378155          15978312 898 +  16417988 I
e calJac3.chr2             203818859 894 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e rheMac8.chr6             179492873 23 - 180051392 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=117391.000000
s hg38.chr5_KI270793v1_alt     35959 26 +    126136 TTCCAATATTTCccctttgttcctcc
s panTro5.chr5             181303385 26 - 181907262 TTCCAATATTTCCTCTTTGTTCCTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023836 26 - 183735486 TTCCAATATTTCccctttgttcctcc
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120537511 26 - 121039945 TTCCAacatttcccctttgttcctcc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179492896 25 - 180051392 TTCCAATGATTTCCC-TTGTTCCCCC
i rheMac8.chr6             I 23 C 0
s macFas5.chr6             181224094 26 - 181584905 ttccaatattttccctttgttccccc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219117 26 -   1764207 ttccaatattttccctttgttccccc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      237439 26 -  16742782 ttccaatattttccctttgttccccc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542923 26 -  91010382 ttccaatattttccctttgttccccc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132865 26 -    438239 ttccaatattttccctttgttccccc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170046 26 -    514179 ttccaatattttccctttgttccccc
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25390081 878 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       58411 876 +    298490 I
e saiBol1.JH378155          15978312 898 +  16417988 I
e calJac3.chr2             203818859 894 + 204313951 I
e canFam3.chr34             11692045 9149 +  42124431 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=52903.000000
s hg38.chr5_KI270793v1_alt     35985 8 +    126136 agccacag
s panTro5.chr5             181303411 8 - 181907262 AGCCACAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023862 8 - 183735486 agccacag
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120537537 8 - 121039945 agccacag
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179492921 8 - 180051392 AGCCACAG
i rheMac8.chr6             C 0 I 11
s macFas5.chr6             181224120 8 - 181584905 agccacag
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219143 8 -   1764207 agccacag
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      237465 8 -  16742782 agccacag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542949 8 -  91010382 ggccacag
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132891 8 -    438239 agccacag
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170072 8 -    514179 agccacag
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203819753 8 + 204313951 AGCTGTAG
i calJac3.chr2             I 894 C 0
s saiBol1.JH378155          15979210 8 +  16417988 AGCCATAG
i saiBol1.JH378155         I 898 C 0
e aotNan1.NW_018503740v1    25390081 878 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       58411 876 +    298490 I
e canFam3.chr34             11692045 9149 +  42124431 I
e gorGor5.CYUI01015805v1      114200 0 +    698298 C

a score=35651.000000
s hg38.chr5_KI270793v1_alt     35993 7 +    126136 gtgtagt
s panTro5.chr5             181303419 7 - 181907262 GTGTAGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023870 7 - 183735486 gtgtagt
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120537545 7 - 121039945 gcatagt
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181224128 7 - 181584905 gcatagt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219151 7 -   1764207 gcatagt
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      237473 7 -  16742782 gcatagt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542957 7 -  91010382 gcatagt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132899 7 -    438239 gcatagt
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170080 7 -    514179 gcatagt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203819761 7 + 204313951 GCAtggt
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15979218 7 +  16417988 GCATAGT
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25390081 878 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e cebCap1.NW_016108158v1       58411 876 +    298490 I
e canFam3.chr34             11692045 9149 +  42124431 I
e rheMac8.chr6             179492929 11 - 180051392 I
e gorGor5.CYUI01015805v1      114200 0 +    698298 C

a score=7098.000000
s hg38.chr5_KI270793v1_alt     36000 1 +    126136 a
s panTro5.chr5             181303426 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023877 1 - 183735486 a
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120537552 1 - 121039945 a
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181224135 1 - 181584905 a
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219158 1 -   1764207 a
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      237480 1 -  16742782 a
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542964 1 -  91010382 a
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132906 1 -    438239 a
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170087 1 -    514179 a
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203819768 1 + 204313951 a
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15979225 1 +  16417988 A
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       59287 1 +    298490 A
i cebCap1.NW_016108158v1   I 876 C 0
e aotNan1.NW_018503740v1    25390081 878 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I
e rheMac8.chr6             179492929 11 - 180051392 I
e gorGor5.CYUI01015805v1      114200 0 +    698298 C

a score=146171.000000
s hg38.chr5_KI270793v1_alt     36001 20 +    126136 gcttcctctagtag-cctcta
s panTro5.chr5             181303427 20 - 181907262 GCTTCCTCTAGTAG-CCTCTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023878 20 - 183735486 gcttcctctagtag-cctcta
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120537553 20 - 121039945 gcttcctctagtag-cctcta
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179492940 21 - 180051392 GCTTCCTCTAGTAGCCCTCTG
i rheMac8.chr6             I 11 C 0
s macFas5.chr6             181224136 20 - 181584905 gcttcctctagtag-cctctg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219159 20 -   1764207 gcttcctctagtag-cctctg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      237481 20 -  16742782 gcttcctctagtag-cctttg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90542965 20 -  91010382 gcttcctctagtag-ccttta
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132907 20 -    438239 gcttcctctagtag-cctctg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170088 20 -    514179 gcttcctctagaag-cctctt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203819769 20 + 204313951 gcttcctctagcag-tcacta
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15979226 20 +  16417988 GCTTCCTCTAGTAG-TCTCTA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       59288 20 +    298490 GCTTCCTCTAGTAG-TCTCTA
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25390081 878 -  25620257 I
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=1709587.000000
s hg38.chr5_KI270793v1_alt     36021 203 +    126136 ccttcaagatatctttcagttgc-ctg--ctaaactccaagcctggttaacaatccttcatttcagttttctgtgtttaaataattgctgtggtttctgtctcttgattgtgccctcactggtaTGTGGGGTTCATGACAACCTGTCATTGACTAAAATGGCAATCTATATT-----TTCCA-ATATAAATAATATATTCATGACAACACAT
s panTro5.chr5             181303447 203 - 181907262 CCTTCAAGATATCTTTCAGTTGC-CTG--CTAAactccaagcctggttaacaatccttcatttcagttttctgtgtttaaataattgctgtggtttctgtctcttgattgtgccctcactggtaTGTGGGGTTCATGACAACCTGTCATCGACTAAAATGGCAATCTATATT-----TTCCA-ATATAAATAATATATTCATGACAACACAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183023898 203 - 183735486 ccttcaagatatctttcagttgc-ctg--ctaaactccaagcctggttaacaatccttcatttcagttttctgtgtttaaataattgctgtggtttctgtctcttgattgtgccctcactggtaTGTGGGGTTCATGACAACCTGTCATCGACTAAAATGGCAATCTATATT-----TTCCA-ATATAAATAATATATTCATGACAACACAT
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120537573 203 - 121039945 ccttcaagatatcttttagttgc-ctg--ctaaactccaagcctggttaacaatccttcatttcagttttctgtgttcaaataattgctgtggtttctgtctcttgattgtaccctgactgataTGTAGGGTTCATGAAAACCTGTTATTGACTAAAATGGTAATCTATATT-----TTCCA-GTATAAATAATATATTCATGACAACACAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179492961 206 - 180051392 CCTTCAAGATATTTAGCGTTTACGCTGCCCTAAACTCAAGGCCTGCTTCacaatccttcatttcagttttctgcactcaaataattgctgtggtttctgtctcttgattgtgccctcactgataTGTGGGGTTCATGACAACCTGTTATTGACTAAAATGGTAATCTATATT-----TTCCA-GTATAAATAATATATTCATGACAACACAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181224156 203 - 181584905 ccttcaagatatcttttagttac-ctg--ctaaactccaagcctgcttaacaatccttcatttcagttttctgcactcaaataattgctgtggtttctgtctcttgattgtgccctcactgataTGTGGGGTTCATGACAACCTGTTATTGACTAAAATGGTAATCTATATT-----TTCCA-GTATAAATAATATATTCATGACAACACAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219179 196 -   1764207 ccttcaagatatcttttagttac-ctg--ctaaactccaagcctgcttaacaatccttca-------tttctgcactcaaataattgctgtggtttctgtctcttgattgtgccctcactgataTGTGGGGTTCATGACAACCTGTTATTGACTAAAATGGTAATCTATATT-----TTCCA-GTATAGATAATATATTCATGACAACACAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      237501 203 -  16742782 ccttcaagatatcttttagttac-ctg--ctaaactccaggcctgcttaacaatccttcatttcagttttctgcgctcaaataattgctgtggtttctgtctcttgattgtgccctcactgatacGTGGGGTTCATGACAACCTGTTATTGACTAAAATGGTAATCTATATT-----TTCCA-ATATAAATAATATATTCATGACAACACAT
i cerAty1.NW_012009470v1   C 0 I 297
s chlSab2.chr4              90542985 203 -  91010382 ccttcaagatatcttttagttac-ctg--ctaaactccaagtctgcttaacaatccttcatttcggttttctgtgctcaaataattgctgtggtttctgtctcttgattgtgccctcgctgatataTGGGGTTCATGACAACCTGTTATTGACTAAAATGGTAATCTATATT-----TTCCA-ATATAAATAATATATTCATGACAACACAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      132927 203 -    438239 ccttcaagatatcttttagttac-ctg--ctaaactccaagcctgcttaacaatccttcatttcagttttctgcgctcaaataattgctgtggtttctgtctcttgattgtgccctcactgatacGTGGGGTTCATGACAACCTGTTATTGACTAAAATGGTAATCTATATT-----TTCCA-ATATAAATAATATATTCATGACAACACAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170108 209 -    514179 ccttcaagatatcttttaattac-ctg--ctaaactccaagcctgcttaacaatccttcctttcagttttctgcgctcaaataattgctgtggtttctgtctcttgattgtgccctcactgataTGTGGGGTTCATGACAACCTGTTATTGACTAAAATGGTAATCTATATTATTTATTCCATGAATAAATAATATATTCATGACAACACAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203819789 202 + 204313951 ccttcaagata-cttttagttac-ctg--gcgaactccaagcctagttaacaatccttcatttcagttttttgtgttcaaataattgctgtggtttctgtctcctggttgtgccctcactgataTGTGAGGTTCATGGCAACCTCTTATTGACTAAAATGGTAATCTATATT-----TCCCA-ATATAAATAATATATTCATGGCAATGCAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15979246 202 +  16417988 CCTTCAAGGTA-CTTTTAGTTAC-CTG--GTAAactccaagtccagttaacaatccttcatttcagttttttgtgttcgaataattgctgtggtttttgtctcctgattgtgccctcactgataTGTGAGGTTCATTGCAACCTGTTATTGACTAAAATGGTAATCCATATT-----TTCCA-ATATAAATAATATATTCATGACAACACAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       59308 201 +    298490 CCCT-AAGATA-CTTTGAGTTAC-CTG--GTAAACTCCAAGTCTagttaacaatccttcatttcagatttttgtgttcaaataattgctgtggcttctgtctcccgattgtgccctcactgacaTGTGAGGTTCATGGCAACCTGTTACTGACTAAAACGGTAATCTATATT-----TTCCA-ATATAAATAATGTATTCATGACAACACAT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25390959 202 -  25620257 CCTTCAAGATA-CTTTTAGTTAC-CTG--GTAAACTCCAAGTCTagttaacggtccttcattgcagtttttggtgttcgaataattgctgtggtttctgcctcctgattgtgccctcactgataTGTGAGGTTCATGACAACCTGTTATTGACTAAAATGGTCATCTATATT-----TTCCA-ATATAAATAATATATTCATGACAACACAT
i aotNan1.NW_018503740v1   I 878 C 0
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=716185.000000
s hg38.chr5_KI270793v1_alt     36224 95 +    126136 CAACATTCTTAATAAGAAAATTCTTTTAGGATACCAGGGGAACATATCTAATTATACCTAACACTCCCTTGTTTGGTGACAGGAAACTCTGGAAT
s panTro5.chr5             181303650 95 - 181907262 CAACATTCTTAATAAGAAAATTCTTTTAGGATACCAGGGGAACATATCTAATTATACCTAACACTCCCTTGTTTGGTTACAGGAAACTATGGAAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183024101 95 - 183735486 CAACATTCTTAATAAGAAAATTCTTTTAGGATACCAGGGGAACATATCTAATTATACCTAACACTCCCTTGTTTGGTTACAGGAAACTCTGGAAT
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120537776 95 - 121039945 CAACATTCTTAATAAGAAAATTCTTTTTGGATATTAGGGGAACATATCTAATTATACCTAACACTCCCTTGTTTGGTTACAGGAAACTCTGGAAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179493167 94 - 180051392 CAACATTCTTAA-AAGAAAATTCTTTTAGGATACTGGGGGAACATATCTAATTATACCTAACATTCGCTTGTTTGGTTACAGGAAACTCTGAGAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181224359 94 - 181584905 CAACATTCTTAA-AAGAAAATTCTTTTAGGATACTGGGGGAACATATCTAATTATACCTAACATTCGCTTGTTTGGTTACAGGAAACTCTGAGAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219375 94 -   1764207 CAACATTCTTAA-AAGAAAATTCTTTTAGGATATTGGGGGAACATATCTAATTATACCTAACATTCGCTTGTTTGGTTACAGGAAACTCTGAGAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      238001 94 -  16742782 CAACATTCTTAA-AAGAAAATTCTTTTAGGATATTGGGGGAACATATCTAATTATACCTAACATTCACTTGTTTGGTTATAGGAAACTCTGAGAT
i cerAty1.NW_012009470v1   I 297 C 0
s chlSab2.chr4              90543188 94 -  91010382 CAACATTCTTAA-AAGAAAATTCTTTTAGGATATTGGGGGAACATATCTAATTATACCTAACATTCGCTTGTTTGGTTACAGGAAACTCTGAGAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      133130 94 -    438239 CAACATTCTTAA-AAGAAAATTCTTTTAGGATATTGGGGGAACATATCTAATTATACCTAACATTCACTTGTTTGGTTACAGGAAACTCTGAGAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170317 94 -    514179 CAACATTCTTAA-AAGAAAATTCTTTTAGGATATTGGGGGAACACATCTAATTACACCTAACATTCGCTTGTTTGATTACAGGAAACTCTGAGAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203819991 94 + 204313951 CAAAATTCTTAAAAAGAAAATTCTTCCAGGATATTAGGGGAACATATTTAATTATACTGAACACTCCCTTGTTTG-TTACAGGAAACTCTGAAAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15979448 69 +  16417988 GAAAATTCTT-----------------------CTAGGGGAACATATTTAATTATACTGAACACTCCCTTGTTTG-TTACAGGAAA--CTGAAAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       59509 94 +    298490 CAAAATTCTTAATAAGAAAATTCTTCTAGGATATTAGGGGAACATATTTAATTATACTGAATACTCCCTTGTTTG-TTACAGGAAACTCTGAAAT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25391161 94 -  25620257 CAAAATTCTTAATAAGAAAATTCTTCTAGGATATTAGGGGAACATATTTAATTATACTGAACACTCCCTTGTTTG-TTACAGTAAACTCTGAAAT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1852214 1141 -   2165740 I
e canFam3.chr34             11692045 9149 +  42124431 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=2306310.000000
s hg38.chr5_KI270793v1_alt     36319 258 +    126136 TTTATGGAAAATACTATGACCATGATTC---ATTAACTTATTTAAAAAGCATTTATCACCCTAAGAATATTTTTGGACTCTT---AAAGGCAAGGATTGTG-CTTTTTCCTTTGGAATTTTGTGGACTAAAATAgaaatgggaattagagacaaaaatcctgataacaactctatcactagctaattatgtcttgtatcttgggcaagtctctgtccctctcatttaggcaagttccttccacagcaaaattggaaaattaaaca
s panTro5.chr5             181303745 258 - 181907262 TTTATGGAAAATACTATGACCATGATTC---ATTAACTTATTTAAAAAGCATTTATCACCCTAAGAATATTTTTGGACTCTT---AAAGGCAAGGATTGTG-CTTTTTCCTTTGGAATTTTGTGGACTAAAATAgaaatgggaattagagacaaaaatcctgataacaactctatcactagctaattatgtcttgtatcttgggcaagtctctgtccctctcatttaggcaagttccttccacagcaaaattggaaaattaaaca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183024196 258 - 183735486 TTTATGGAAAATACTATGACCATGATTC---ATTAACTTATTTAAAAAGCATTTATCACCCTAAGAATATTTTTGGACTCTT---AAAGGCAAGGATTGTG-CTTTTTCCTTTGGAATTTTGTGGACTAAAATAgaaatgggaattagagacaaaaatcctgataacaactctatcactagctaattatgtcttgtatcttgggcaagtctctgtccctctcatttaggcaagttccttccgcagcaaaattggaaaattaaaca
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120537871 258 - 121039945 TTTATGGAAAATACTATGACCATGATTA---ATTAACTTATTTAAAAAGCATTTATCATCCCAAGAATATTTTCAGACTCTT---AAAGGCAAGGATTGTG-CTTTTTCCTTTGGAATTTTGTGGACAAAAATAgaaatgggaattagagacaaaaattctgataacaactctatcactagctaattgtgtcttgtattgtgggcaagtctctgtccctctcatttaggctagttccttctgcagcagaattggaaaattacaca
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179493261 258 - 180051392 TTTATGGAAAATACTATAACCATGATTC---ATTAACTTATTTAAAAAGCATTTATCATCCTAAGAATATTTTCAGACTCTT---AAAGGCAAGGATTGTG-CTTTTTCCTTTGGAATTTTGTGGACTGAAATAgaaatgggaattagagacaaaaattctgataacaactctatcactagctaattgtgtcttgtatcttgggcaagtctctgtccctctcatttaggcaagttctttctgcagcaaaattggaaaattaaaca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181224453 258 - 181584905 TTTATGGAAAATACTATAACCATGATTC---ATTAACTTATTTAAAAAGCGTTTATCATCCTAAGAATATTTTCAGACTCTT---AAAGGCAAGGATTGTG-CTTTTTCCTTTGGAATTTTGTGGACTGAAATAgaaatgggaattagagacaaaaattctgataacaactctatcactagctaattgtgtcttgtatcttgggcaagtctctgtccctctcatttaggcaagttccttctgcagcaaaattggaaaattaaaca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219469 258 -   1764207 TTTATGGAAAATACTATAACCATGATTC---ATTAACTTATTTAAAAAGCGTTTATCATCCTAAGAATATTTTCAGACTCTT---AAAGGCAAGGATTGTG-CTTTTTCCTTTGGAATTTTGTGGACTGAAATAgaaatgggaattagagacaaaaattctgataacaactctatcactagctaattgtgtcttgtatcttgggcaagtctctgtccctctcatttaggcaagttccttctgcagcaaaattggaaaattaaaca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      238095 258 -  16742782 TTTATGGAAAACACTATAACCATGATTC---ATTAACTTATTTAAAAAGCGTTTATCATCCTAAGAATATTTTCAGACTCTT---AAAGGCAAGGATTGTG-CTTTTTCCTTTGGAATTTTGTGGACTGAAATAgaaatgggaattagagacaaaaattctgataacaactctatcactagctaatggtgtcttgtatcttgggcaagtctctgtgcctcttatttaggcaagttccttctgcagcaaaattggaaaattaaaca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90543282 255 -  91010382 TTTAT--AAAATACTATGGCCATGATTC---ATTAACTTGTTTAAAAAGCATTTAGCACCCTAAG-ATATTTTCAGACTCTG---AAAGGCAAGGATTGTG-CTTTTTCTTTTGGAATTTTGTGGACTGAAATAgaaatgggaattagagacaaaaattctgataacaactctatcactagctaattgtgtcttgtatcttgggcaagtctctgtccctctcatttaggcaagttccttctgcagcaaaattggaaaattaaaca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      133224 258 -    438239 TTTATGGAAAACACTATAACCATGATTC---ATTAACTTATTTAAAAAGCGTTTATCATCCTAAGAATATTTTCAGACTCTT---AAAGGCAAGGATTGTG-CTTTTTCCTTTGGAATTTTGTGGACTGAAATAgaaatgggaattagagacaaaaattctgataacaactctatcactagctaattgtgtcttgtatcttgggcaagtctctgtccctcttatttaggcaagttccttctgcagcaaaattgaaaaattaaaca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170411 258 -    514179 TTTATGGAAAATACCATAACCACGATTC---ATTAACTTATTTAAAAAGCATTTATCATCCTAAGAATATTTTCAGACTCTT---AAAGGCAAGGATTGTG-CTTTTTCCTTTGGAATTTTGTGGACTGAAATAGAAATGGGAATTAGAGACAAAAATTCTGATAACAACTCTATCACTAGCTAATTGTGTCTTGCATCTTGGGTAAGTCTCTCTCCCTCTCATTTAGGCAAGTTCCTTCTGCAGCAAAATTGGAAAATTACACA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203820085 256 + 204313951 TCTATGGAAACAGCTGTGACCATGATTC---ATTCATGTATTTTAAAAACG-TTTTCATCCCAAGAATAGTTTCAGACTTTT---AAAGGCAAGGATTGTG-CTTTTTTATTTGAAATTTTGTGGGCTAAAATAAAAAAGGGAATTAGAGAAAAAAAATTTGAAAACAACTCTATTACTAGCT-CTCGTGTCTTGTATCTTGGGCAAGTCTCTGTCCCTGTCATTAAGGCAAGTTCCTTCCGCAGCAAAACTGGAAAATCAAACA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15979517 257 +  16417988 TCTATGGAAACAGCTATGACCATGATTC---ATTAACGTATTTTAAAAACATTTTTCACCCCAAGAATATTTTCAGACTTTT---AAAGGCAAGGATTGTA-CTTTTTTATTTGAAATTTTCTGAGCTAAAATAGAAAAGGGCATTCGAGACAAAAAGTTTGAAAAcaactatattactagctaattgtgtcttgcatcttgggcaagtctctgtccctctcattaaggcaagttccttctgcagcaaaattggaaaattaaac-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       59603 257 +    298490 TCTATGGAAACGACTATGACCATGAATC---ATTAACATATTTTAAAAACATTTTTCATCCCAAGAATATTTTCAGACTTTT---AAAGGCAAGGATTGTG-CTTTTTTATTTGAAATTTTGTGGGCTAAAATAGAAAAgggaattagagacaaaaattttgaaaacaattctattactagctaatcgtgt-ttgtatcttgggcaagtctctgtccctctcattaaggcaagttccttctgcagcaaaactggaaaattaaaca
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25391255 246 -  25620257 TCTA------------TGACCATGATTC---ATTAACGTATTTTAAAAACATTTTTCATCCTAAGAATATTTTCAGACTTTT---AAAGGCAAGGATTGTG-CTTTTTTATTTGAAATTTTGTGGGCTAAAATAGAAAAGATAATTAGAGACAAAAATTTTGAAAAcaactctattactagctaattgtgtcttgtatcttgggcaagtctctgtccctctcattaaggcaagttccttctgcagcaaaactggaaaattaaaca
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11701194 261 +  42124431 TTTATGGAAAATACTAAGACCATGATTCTTTGTTCATTCATTGAGACAGCATTCATCTTCCCAAGAAAATTTTCAGTTTCTCCTGAAAGGCAAAGGTTGTGCCTTTTTTCTTGGAAACTGCATGGAATGAAATAG--ATGTGAATTAGAGACGCACATTCTCATCACAGCCCTTTCACCTGTC-ATTATATCTTCCTATCTGGGCAAGCATCTGCCCTTCTCTGGAAAGC-AGTTCCTTGTGTGGCTAAATATGAAAATAAAACA
i canFam3.chr34            I 9149 C 0
e otoGar3.GL873745           1852214 1141 -   2165740 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=885029.000000
s hg38.chr5_KI270793v1_alt     36577 85 +    126136 gtgtaattgttcaggtcttg-tcAGATACATGACTTTTTG---CTATAGCAT-TCAACACATTAGAAATACATCAGGCAGCCAGTAAATG
s panTro5.chr5             181304003 85 - 181907262 gcgtaattgttcaggtcttg-tcAGATACATGACTTTTTG---CTATAGCAT-TCAACACATTAGAAATACATCAGGCAGCCAGTAAATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183024454 85 - 183735486 gcgtaattgttcaggtcttg-tcAGATACATGACTTTTTG---CTATAGCAT-TCAACACATTAGAAATACATCAGGCAGCCAGTAAATG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120538129 85 - 121039945 gtttaattgttcaggtcttg-tcAGATACATGACTTTTTG---CTATAGCAT-TCAACACATTAGAAATACATCAGGCAGCCAGTAAATG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179493519 85 - 180051392 gcataattgttcaggtcttg-tcAGATATATGACTTTTTG---CTATAGCAT-TCAACACATTAGAAATACATCAGGCAGCCAGTAAATG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181224711 85 - 181584905 gcataattgttcaggtcttg-tcAGATATATGACTTTTTG---CTATAGCAT-TCAACACATTAGAAATACATCAGGCAGCCAGTAAATG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219727 85 -   1764207 gcataattgttcaggtcttg-tcagatatatgactttttg---ctatagcat-tcaacacattagaaatacatcaggcagccagtaaatg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      238353 85 -  16742782 gcataattgttcaggtcttg-tcAGATATATGACTTTTTG---CTATGGCAT-TCAACACGTTAGAAATACATCAGGCAGCCAGTAAATG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90543537 85 -  91010382 gcgtaattgttcatgtcctg-tcAGATATATGACTTTTTC---CTATAGCAT-TCAACACATTAGAAATATATCAGGCAGCCAGTAAATG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      133482 85 -    438239 gcataattgttcaggtcttg-tcAGATATATGACTTTTTG---CTATAGCAT-TCAACACGTTAGAAATACATCAGGCAGCCAGTAAATG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170669 85 -    514179 GCATAATTGTTCAGGTCTTG-TCAGATATATGACTTTTTG---CTATAGCAT-TCAACACATTAGAAATACATCAGGCAGCCAGTAAATG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203820341 85 + 204313951 GTATAATTGTTCAGGTCTTG-TCAGATATGCGACATTTTG---CTACAGCAT-TCAACACATTAGAAATACATCAGGCAGCCAGTAAATG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15979774 84 +  16417988 -tataattgttcaggtcttg-tcAGATATGTGACTTTTTG---CTACAGCAT-TCAACACATTAGAAATACATCAGGCAGCCGGTAAATA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       59860 85 +    298490 gtataatttttcaggtcttg-tcagacatgtgactttttG---CTACAGCGT-TCAACATATTAGAAATACATCAGGCAGCCAGTAAATA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25391501 85 -  25620257 gtataattgttcaggtcttg-tcGGATATGTGACTTTTTG---CTACAGCAT-TCAACACATTAGAAATACATGAGGCAGCCCGTAAATA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1853355 83 -   2165740 GTATAATTATTAAGGTCTTG-TCAGATACATGAC--TTTG---ATATAGCAT-TTAGTACATTAGAAATACATCAGGCAGCTATCAAGCA
i otoGar3.GL873745         I 1141 C 0
s canFam3.chr34             11701455 90 +  42124431 GGGTAATTATTAGGGTCTTGCTTAGATAGATGACTTGCCAAACCTACGACTTCTTGCTACATTAGGAGCACATTAAGCAGCTGATAAATG
i canFam3.chr34            C 0 I 39
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=38775.000000
s hg38.chr5_KI270793v1_alt     36662 4 +    126136 TTTA
s panTro5.chr5             181304088 4 - 181907262 TTTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183024539 4 - 183735486 TTTA
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120538214 4 - 121039945 TTTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179493604 4 - 180051392 TTTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181224796 4 - 181584905 TTTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219812 4 -   1764207 TTTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      238438 4 -  16742782 TTTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90543622 4 -  91010382 TTTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      133567 4 -    438239 TTTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170754 4 -    514179 TTTA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203820426 4 + 204313951 TTTA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15979858 4 +  16417988 TTTA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       59945 4 +    298490 TTTA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25391586 4 -  25620257 TTCA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1853438 4 -   2165740 TTTA
i otoGar3.GL873745         C 0 I 3
e canFam3.chr34             11701545 39 +  42124431 I
e gorGor5.CYUI01015805v1      114200 0 +    698298 C

a score=1069561.000000
s hg38.chr5_KI270793v1_alt     36666 123 +    126136 CAACAGAAGtgatatggtttggctgtgtccccacctaaatctcatcttgaattgtagttcccataatccccacatgtcatgggagggacctggtgggaagtcattgaatcatggggacagtta
s panTro5.chr5             181304092 123 - 181907262 CAACAGAAGtgatatggtttggctgtgtccccacctaaatctcatcttgaattgtagttcccataatccccacatgtcatgggagggacctggtgggaagtcattgaatcatggggacagtta
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183024543 123 - 183735486 CAACAGAAGtgatatggtttggctgtgtccccacctaaatctcatcttgaattgtagttcccataatccccacatgtcatgggagggacctggtgggaagtcattgaatcatggggacagtta
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120538218 123 - 121039945 CAACAGAAAtgatgtggcttggctgtgtccccagctaaatctcatcttgaactgtagttcacataatccccatgtgtcatgggagggacctggtgggaagtcattgtatcatgaggacagtta
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179493608 123 - 180051392 CAACAGAGGtgatatggtttggctgtgtccccacctaaagctcatcttgaactgtagttcccataatccccacatgtcatgggagggacctggtgggaagtcattgaatcatggggacagtta
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181224800 123 - 181584905 CAACAGAGGtgatatggtttggctgtgtccccacctaaagctcatcttgaactgtagttcccataatccccacatgtcatgggagggacctggtgggaagtcattgaatcatggggacagtta
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219816 123 -   1764207 CAACAGAGGtgatatggtttggctgtgtccccacctaaagctcatcttgaactgtagttcccataatccccacatgtcatgggagggacctggtgggaagtcattgaatcatggggacagtta
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      238442 123 -  16742782 CAACAGAGGtgatatggtttggctgtgtccccacctaaagctcatcttgaactgtagttcccataatccccacatgtcatgggagggacctggtgggaagtcattgaatcatgtggacaatta
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90543626 123 -  91010382 CAACAGAGGtgatatggtttggctgtgtccccacctaaagctcatcttgaactgtagttcccataatccccacatgtcatgggagggacctggtgggaagtcattgactcatggggacagtta
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      133571 123 -    438239 CAACAGAGGtgatatggtttggctgtgtccccacctaaagctcatcttgaactgtagttcccataatccccacatgtcatgggagggacctggtgggaagtcattgaatcatgtggacagtta
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170758 123 -    514179 CAACAGAGGtgatatggtttggccgtgtccccacctaaagctcgtcttgaactgtagttcccataatccccacatgtcatgggagggacctggtgggaagtcattgagtcatggggacagtta
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203820430 123 + 204313951 GAACAGAGGtgatatggtttggctgtgttcctacccaaatctcatcttaaattgtagttcccataatccccacgtgtcatgggagggacccagtgggaagtccttaaatcatgggagtggtta
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15979862 123 +  16417988 GAACAGAGAtgatatggtttggctgtgtccctacccaaatctcatcttaatttgtagttcccataatatccatgtgtcatggggtggacccagtgggaagtcattaaatcatgggggcagtta
i saiBol1.JH378155         C 0 I 1964
s cebCap1.NW_016108158v1       59949 123 +    298490 GAACAGTGGtgatatgatttggctgtgtccctacccaaatctcatcttaaattgtacttcccataatccccatgtgtcatgggaggggcccagtgggaagtcattaaatcatgggggcagtta
i cebCap1.NW_016108158v1   C 0 I 2271
s aotNan1.NW_018503740v1    25391590 123 -  25620257 GAACAGAGGtgatatggtttggctgtgtccctacccaaatctaaccttaaattgtagttcccataatccccatgtgtcatgggtgggacccagcgggaagtcattaaatcatgggggcggtta
i aotNan1.NW_018503740v1   C 0 I 1889
e otoGar3.GL873745           1853442   3 -   2165740 I
e canFam3.chr34             11701545  39 +  42124431 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=2066008.000000
s hg38.chr5_KI270793v1_alt     36789 257 +    126136 ccctcatgctgttctcatgatagtgagtga-ttttcacaagatctgatggttttacaaagggctt-cccccttcactctgcacttcttcttgctgctgccatgtgaagaaggacatgtttgcttccccttccaccatgattgtaagtttcctgaggcctcctcagccttgtgaaactgtgagtcaattaaacctctttccttcataaattaccaagtctcaggcagttctttatagcagcatgagaacaaaccactaca
s panTro5.chr5             181304215 257 - 181907262 ccctcatgctgttctcatgatagtgagtga-ttttcacaagatctgatggttttacaaagggctt-cccccttcactctgcacttcttcttgctgctgccatgtgaagaaggacatgtttgcttccccttccaccatgattgtaagtttcctgaggcctccccagccttgtgaaactgtgagtcaattaaacctctttccttcataaattaccaagtctcaggcagttctttacagcagcatgagaacaaaccactaca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183024666 257 - 183735486 ccctcatgctgttctcatgatagtgagtga-ttttcacaagatctgatggttttacaaagggctt-cccccttcactctgcacttcttcttgctgctgccatgtgaagaaggacatgtttgcttccccttccaccatgattgtaagtttcctgaggcctccccagccttgtgaaactgtgagtcaattaaacctctttccttcataaattaccaagtctcaggcagttctttatagcagcatgagaacaaaccactaca
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120538341 226 - 121039945 ccctcatgctgttctcatgatagtgggtga-ttttcacaagatctgatggttttacaaagggctt-cccccttctatctgc-------------------------------acatgtttgcttccccttccaccatgattataagtttcctgaggcctccccagccttgtgaaactgtgagtcaattaaacctctttccttcataaattacccagtcccaggcagttctttatagcagcatgagaacaaaccactaca
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179493731 256 - 180051392 ccctcatgttagtctcatgatagtgagtga-ttttcacaagatctgatggtcttacaaagggctt--ccccttcattctgcacttcttcttgctgctgccatgtgaagaaggacatgttggcttcctcttccaccatgattgtaagtttcctgaggtctccccagccctgtgatactgtgagtcaattaaatctctttccttcataaattaccaagtctcaggcagttctttatagcagcgtgagaaaaaaccactaca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181224923 256 - 181584905 ccctcatgttagtctcatgatagtgagtga-ttttcacaagatctgatggtcttacaaagggctt--ccccttcattctgcacttcttcttgctgctgccatgtgaagaaggacatgttggcttcctcttccaccatgattgtaagtttcctgaggtctccccagccctgtgatactgtgagtcaattaaatctctttccttcataaattaccaagtctcaggcagttctttatagcagcgtgagaaaaaaccactaca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      219939 256 -   1764207 ccctcatgttagtctcatgatagtgagtga-ttttcacaagatctgatggtcttacaaagggctt--ccccttcattctgcacttcttcttgctgctgccatgtgaagaaggacatgttggcttcctcttccaccatgattgtaagtttcctgaggtctccccagccctgtgatactgtgagtcaattaaatctctttccttcataaattaccaagtctcaggcagttctttatagcagcgtgagaaaaaaccactaca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      238565 256 -  16742782 ccctcatgctagtctcatgatagtgagtga-ttttcacaagatctgatggtcttacaaagggctt--ccccttcattctgcacttcttcttgctgctgccatgtgaagaaggacatgttggcttcctcttccaccatgattgtaagtttcctgaggtctccccagccctgtgaaactgtgagtcaattaaatctctttgcttcataaattaccaagtctcaggcagttctttatagcagcgtgagaaaaaaccaCTTCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90543749 255 -  91010382 ccctcatgctattctcatgatagtgagtga-ttttcataagatctgatggtcttacaaaaggctt--ccccttcattctgcacttcttcttgctgctgccatgtgaagaaggacatgttggcttcc-cttccaccatgattgtaagtttcctgaggtctccccagccctgtgaaactgtgagtcaattaaatctctttgcttcatgaattaccaagtctcaggcagttctttatagcagcgtgagaaaaaaccaCTTCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      133694 256 -    438239 ccctcatgctagtctcatgatagtgagtga-ttttcacaagatctgatggtcttacaaagggctt--ccccttcattctgcacttcttcttgctgctgccatgtgaagaaggacatgttggcttcctcttccaccatgattgtaagtttcctgaggtctccccagccctgtgaaactgtgagtcaattaaatctctttgcttcataaattaccaagtctcaggcagttctttatagcagcgtgagaaAAAAACACTTCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      170881 253 -    514179 ccctcatgctagtctcatgatagtgagtga-ttttcacaagatctgatggtcttacaaagggctt--ccccttcattctgcacttcttcttgctgctgccatgt---gaaggacatgttggcttccccttctaccatgattgtaagtttcctgaggtctccccagccctgtgaaactgtgagtcaattaaacctctttccttcataaattaccaagtatcaggcagttctttatagcagcatgagaaaaaaccactaca
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203820553 255 + 204313951 cccttatgctgttctcatgatagtgagtgagttcttacaagagctgatggttttataaggtacttcccccagttttgctccac-acttcttgctgctaccacgt---gaaggacatgtttgtcccccctcccatcgtgattgtaagtttcctaatgcttctccatccccgtggaacagtgagtcaattaaacctctttactttataaattactgagtcatagactgttctttatagcagcatgagaatggattgataca
i calJac3.chr2             C 0 I 1001
s saiBol1.JH378155          15981949 259 +  16417988 ccctcatgctgttctcatgacagtgagtgatttttcacaagatctgatggttttacagagggcttccttccttctctctgcacttcttcttgctgctgccatgtgaagaaggacatgtttgcttctccttctgccatgattttaagttttctgaggcatccccaaacttacgaaactgtgagtcaattaaacctctttccttcataaattaccaagtctcaggtagttctttatagcagtatgagaacaaagcactaca
i saiBol1.JH378155         I 1964 C 0
s cebCap1.NW_016108158v1       62343 256 +    298490 ccctcatgctgttctcatgacagtgagtgatttttcacaagatctgatggttttacagagggcttccttccttctctctgcac---ttcctgctgctgccatgtgaagaaggacaggtttgcttccccttctgccatgattttaagttttctgaggcaaccccaaccttgtggaactgtgagtcaattaaacctctttccttcataaatcaccaagtctcaggcagttctttatagcagtatgagaacaaaccactaca
i cebCap1.NW_016108158v1   I 2271 C 0
s aotNan1.NW_018503740v1    25393602 259 -  25620257 ccctcatgctgttctcatgacagtgagtgatttttcacaagatctgatggttttacagagggcttccttccttctccctgcacttcttcttgctgcttccatgtgaagaaggatatgtttgcttccccttctgccatgattttaagtttcctgaggcctccccaaccctgtgaaactgtgagtcaattaaacctctttccttcacaaattaccaagtctcaggcagttctttatagcagtacgagaacaaaccactgca
i aotNan1.NW_018503740v1   I 1889 C 0
e otoGar3.GL873745           1853442   3 -   2165740 I
e canFam3.chr34             11701545  39 +  42124431 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=313923.000000
s hg38.chr5_KI270793v1_alt     37046 39 +    126136 AGAGGAAGTGCATTTGAATATGCCCACTTTG-----------------------------------------GTGCTAGC
s panTro5.chr5             181304472 39 - 181907262 AGAGGAAGTGCATTTGAATATGCCCACTTTG-----------------------------------------gtgctagc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183024923 39 - 183735486 AGAGGAAGTGCATTTGAATATGCCCACTTTG-----------------------------------------gtgctagc
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120538567 39 - 121039945 AGAGGAAGTGCATTTGAATACACCCACTTTG-----------------------------------------gtgctagc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179493987 39 - 180051392 AGAGGAAGTGCATTTGAATATGCTCACTTTG-----------------------------------------GTGCTAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181225179 39 - 181584905 AGAGGAAGTGCATTTGAATATGCTCACTTTG-----------------------------------------gtgctagc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      220195 39 -   1764207 AGAGGAAGTGCATTTGAATATGCTCACTTTG-----------------------------------------gtgctagc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      238821 39 -  16742782 AGAGGAAGTGCATTTGAATATGCCCACTTTG-----------------------------------------gtgctagc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90544004 39 -  91010382 AGAGGAAGTGCATTTGAATACGCCCACTTTG-----------------------------------------gtgctagc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      133950 39 -    438239 AGAGGAAGTGCACTTGAATACGCCCACTTTG-----------------------------------------gtgctagc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      171134 39 -    514179 AGAGGAAGTGCATTTGAATACGCCCACTTTG-----------------------------------------gtgctagc
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15982208 39 +  16417988 GGAGGAAGTGCATCTGAATATGTCCACTTTG-----------------------------------------gtgctagc
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       62599 39 +    298490 AGAGGAAGTGCATCTGAATATGTCCACTTTG-----------------------------------------gtgctagc
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25393861 80 -  25620257 AGAGGAAGTGCATCTGAATCTGCCCACTCTGTGCCATGATGCACAACCTGACCCACCTCCTTTGCCCACTCTGTGCCAGC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1853445 39 -   2165740 AAAGGAAATCCATTCAAGTACCCTCACTTTG-----------------------------------------GTGTTGGG
i otoGar3.GL873745         I 3 C 0
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11701545 39 +  42124431 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=1421747.000000
s hg38.chr5_KI270793v1_alt     37085 192 +    126136 AGCCTCCATGGTGC---------------------------------------------------CACAACCTGACCATGCCTCCCTG----------GCTCCTGGTATTCACTTCTCATCACACTAGGTTGGACC--CAGGCCAAATGACAGTGGCAGATGTTGTGGG-TGTCACCTCTGAGATCAGGCTGTGGAAGACCACGGCTCCATTCCAAGTGCTCACTCTCACATCACTGGCTCTAGGAGATACTTAAG
s panTro5.chr5             181304511 192 - 181907262 agcctccatggtgc---------------------------------------------------cacaacctgactgtgcctccctg----------gctcctggtattcacttctcatcacactaggttggacc--caggccaaatgacagtggcagatgtggtggg-tgtcacttctgagatcaggctgtggaagaccacggctccattccaagtgctcactctcacatcactggctctaggagatacttaag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183024962 192 - 183735486 agcctccatggtgc---------------------------------------------------cacaacctgaccgtgcctccctg----------gctcctggtattcacttctcatcacactaggttggacc--caggccaaatgacagtggcagatgtggtggg-tgtcacttctgagatcaggctgtggaagaccacggctccattccaagtgctcactctcacatcactggctctaggagatacttaag
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120538606 184 - 121039945 agcctccatggtgc---------------------------------------------------cacaacctgaccatgc------------------ctcctggtattcatttctcatcacactaggttggacc--catgccaaatgacagtggcagatatggtggg-tgtcacttctgagatcaggctgtggaagaccacggctccattccaagtgctcactctcacatcactagctctaggagatacttaag
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179494026 187 - 180051392 AGCCTCCTTGGTGC---------------------------------------------------CACAACCTGACCATGCCtccatg----------cctcctggtattcacttctcatcacactaggttgtg-----atgacaaatgacagtggcagatgtggtggg-tgtcacttctgagatcaggctatggaagaccatggctccattcca--cgctcactctcacatcactgactctgggagatacttaag
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181225218 187 - 181584905 agcctccatggtgc---------------------------------------------------cacaacctgaccatgcctccatg----------cctcctggtattcacttctcatcacactaggttgtg-----atgacaaatgacagtggcagatgtggtggg-tgtcacttctgagatcaggctatggaagaccatggctccattcca--cgctcactctcacatcactggctctgggagaTACTTAAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      220234 187 -   1764207 agcctccatggtgc---------------------------------------------------cacaacctgaccatgcctccatg----------cctcctggtattcacttctcatcacactaggttgtg-----atgacaaatgacagtggcagatgtggtggg-tgtcacttctgagatcaggctatggaagaccatggctccattcca--cgctcactctcacatcactggctctgggagatacttaag
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      238860 190 -  16742782 agcctccatggtgc---------------------------------------------------cacaacctgacgatgcctccatg----------ccccctggtattcacttctcatcacgctaggttggacc--catgccaaatgacagtggcagatgtggtggg-tgtcacttctgagatcaggctgcggaagaccatggctccattcca--cgctcactctcacatcactggctctgggagatacttaag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90544043 190 -  91010382 agcctccatggtgc---------------------------------------------------cacaacctgacgatgcctccgtg----------cctcctggtattcacttctcatcacactaggttgggcc--catgccaaatgacagtggcagatgtggtggg-tgtcacttctgagatcaggctgtggaagaccatggctccattcca--tgctcactctcacatcactggctctgggagaTACTTAAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      133989 190 -    438239 agcctccatggtgc---------------------------------------------------cacaacctgacgatgcctccatg----------ccccctggtattcacttctcatcacactaggttggacc--catgccaaatgacagtggcagatgtggtggg-tgtcacttctgagatcaggctgtggaagaccatggctccattcca--cgctcactctcacatcactggctctgggagatacttaag
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      171173 190 -    514179 agcctccatggtgc---------------------------------------------------cacaacctgaccatgcctccatg----------cctcctggtattcacttctcgtcacactaggttggacc--catgccaaatgacagtggcagacgtggtggg-tgtcacttctgagatcaggctgtggaagaccatggctccattccg--cgctcactctcacatcactggctctgggagatacttaag
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15982247 183 +  16417988 agcctccatgatgc---------------------------------------------------cacagcctgacc---------ta----------cctcctggcattcatttctcatcacaccaggttggacc--catgccaagtgacagtggcagatgtgacagg-tgtcacttctgagatcaggctgtggaagaccatggctcgattccaagtgatcactctcagatcaccggctctgggagacacttaag
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       62638 183 +    298490 agcctccatgatgc---------------------------------------------------cacaacctgacc---------ta----------cctcctggcattcagttctcatcacaccaggttggaac--catgccaagtgacagtggcagatgtgatggg-tgtcacttctgagatcaggctgtggaagaccatggctccattccaagtgatcactctcagatcactggctctgggagttgcttaag
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25393941 234 -  25620257 AGCCTCCGTGATGCACAACCTGACCCACTTCCTTTGCCCACTCTGTGCCAGCAGCCTCCGTGATGCACAACCTGACC---------CA----------CCTCCTGGCATTCATTTCTCATCACACCAGGTTGGACC--CATGCCAAGTGACAGtggcagatgtgacggg-tgtcacttctgagatcaggctgtggaagaccatggctccgttccaagtgttcactctcagatcactggctctgggagatgcTTAAG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1853484 178 -   2165740 TACCCCC-TGGTGC---------------------------------------------------CCTGCCATGATC-TGACTGCCTGATATTTGGGCCCACCCCATCATCACCTCTCATCACACTGAAGTGGACC----------------ATGGCAG-------GCA-TGTCTCTTCTGAGTTTAGGCTATAGGAGATGCAGGATGTGTCCTG-GGGCTCTCTCTCGGATCAGTGACTTTAGAGGATGCTCCAG
i otoGar3.GL873745         C 0 I 20
s canFam3.chr34             11701584 179 +  42124431 AGCCCCCGTGGTCC---------------------------------------------------CAC-------TCCTGGCTTCCTG----------CC------CACGCAGCTCCCATCACA-GGGGTCGGACTGTGTAGCCAGCAGGAGGTGGCAGCTGTGAAGGGATGTCACCTCCGAG-CGAGGCTGATGG-GACCATGTTTCCACTCCTGGGGCCCTCTCTCCAACTACCGGCTCTGGGAGACACTCCAG
i canFam3.chr34            I 39 C 0
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=443903.000000
s hg38.chr5_KI270793v1_alt     37277 66 +    126136 ---------GAGAGCAACTAttaggttggtgcaaaagtaattgcagtttttgtgattactttcaatATTTTAATA
s panTro5.chr5             181304703 66 - 181907262 ---------gagagcaactattaggttggtgcaaaagtaattgcagtttttgtgattactttcaatattttaata
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183025154 66 - 183735486 ---------gagagcaactattaggttggtgcaaaagtaattgcagtttttgtgattactttcaatattttaata
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120538790 66 - 121039945 ---------gagagcaactattaggttggtgcaaaagtaattgcagtttttgttattactttcaatattttaata
i nomLeu3.chr6             C 0 I 12
s rheMac8.chr6             179494213 66 - 180051392 ---------gagaggaactattaggttggtgcaaaactaattgcagtctttgccattattttcgatattttaata
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181225405 66 - 181584905 ---------GAGAGGAACTAttaggttggtgcaaaactaattgcagtctttgccattattttcgatATTTTAATA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      220421 66 -   1764207 ---------gagaggaactattaggttggtgcaaaactaattgcagtctttgccattatttttgatattttaata
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239050 66 -  16742782 ---------gagagaaactattaagttggtgcaaaactaattgcagtctttgccattatatttgatattttaata
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90544233 66 -  91010382 ---------GAGAGAAACTAttaggttggtgcaaaactaattgcagtctttgccattatttttgatATTTTAATA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      134179 66 -    438239 ---------gagagaaactattaagttggtgcaaaactaattgcagtctttgccattatttttgatattttaata
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      171363 66 -    514179 ---------gagaggaactattaggttggtgcaaaactaattgcagtctttgccattattttcgatattttaata
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15982430 66 +  16417988 ---------gagagaaactattatgttggtgcagaaataattgcagtttttgccattactttcaatattttaata
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       62821 65 +    298490 ---------gagataaactgttatgttggtgcaaacgt-attgcagtttttgccattactttcaatattttaata
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25394175 66 -  25620257 ---------GAGAGAAACTAttatgctggtgcaaaagtaattgcagtttttgccattgcttccagtATTTTAATA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11701763 20 +  42124431 TGGCACCCGGAAAGGAGCTA-------------------------------------------------------
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1853662 20 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=3842487.000000
s hg38.chr5_KI270793v1_alt     37343 490 +    126136  
s panTro5.chr5             181304769 489 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183025220 489 - 183735486  
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120538868 491 - 121039945  
i nomLeu3.chr6             I 12 C 0
s rheMac8.chr6             179494279 494 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181225471 494 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      220487 494 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239116 494 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90544299 494 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      134245 493 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      171429 501 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15982496 484 +  16417988  
i saiBol1.JH378155         C 0 I 3
s cebCap1.NW_016108158v1       62886 487 +    298490  
i cebCap1.NW_016108158v1   C 0 I 3
s aotNan1.NW_018503740v1    25394241 488 -  25620257  
i aotNan1.NW_018503740v1   C 0 I 30
s otoGar3.GL873745           1853682 471 -   2165740  
i otoGar3.GL873745         I 20 I 4
s canFam3.chr34             11701783 393 +  42124431  
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=199162.000000
s hg38.chr5_KI270793v1_alt     37833 29 +    126136 TGCTGAGCCTGGCACTTCTGAGGATGCCT
s panTro5.chr5             181305258 29 - 181907262 TGCTGAGCCTGGCACTTCTGAGGATGCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183025709 29 - 183735486 TGCTGAGCCTGGCACTTCTGAGGATGCCT
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539359 29 - 121039945 TGCTAAGCCTGGTACTTATGAGGATGCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179494773 29 - 180051392 TGCTGAGCCTGGCACTCCTGAGGATGCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181225965 29 - 181584905 TGCTGAGCCTGGCACTCCTGAGGATGCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      220981 29 -   1764207 TGCTGAGCCTGGCACTCCTGAGGATGCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239610 29 -  16742782 TGCTGAGCCTGGCACTCCTGAGGATGCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90544793 29 -  91010382 TGCTGAGCCTGGCACTCCTGAGGATGCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      134738 29 -    438239 TGCTGAGCCTGGCACTCCTGAGGATGCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      171930 29 -    514179 TGCTGAGCCTGGCACTCCTGAGGATGCCT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15982983 28 +  16417988 TGCTGAACCTGACACTCCTGAGGATGCA-
i saiBol1.JH378155         I 3 C 0
s cebCap1.NW_016108158v1       63376 28 +    298490 TGCTGAACCTGACACTCCTGAGGATGCA-
i cebCap1.NW_016108158v1   I 3 C 0
s otoGar3.GL873745           1854157 18 -   2165740 GGCAGGGCCTAGTA----TAAG-------
i otoGar3.GL873745         I 4 C 0
s canFam3.chr34             11702176 28 +  42124431 TGCTGAGCCTGACATTTCTGGAGGTGCT-
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25394729 30 -  25620257 I
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=2136129.000000
s hg38.chr5_KI270793v1_alt     37862 288 +    126136 TCCTGGAAGCTTCAGTGTCAGACAGTGTGGAGTTATGCTTTTTCTCTTTC-GGGGCAGAAAATTCCAGAGCTGGTGAGCTGCAGGATGAGCCCC--CAATGTTCTGACGGTTGTGGGCATGGCAGGTGCCAAGAATAACGCACACCCTCCGCATTACAGCCTGGATGGGCTGTGGGTCCATTGCCACCCCAGAGCTGCTGCTCACAGAATGAGGCACAGCCTGGGCTCTGCTCTGCACCT-GTGCCGGGAGCAGCCTGGGGCATTCTGTGGATTTGGGGATAGGTATGATTC
s panTro5.chr5             181305287 289 - 181907262 TCCTGGAAGCTTCAGTGTCAGACAGTGTGGAGTTATGCTTTTTCTCTTTCAGGGGCAGAAAATTCCAGAGCTGGTGAGCTGCAGGATGACCCCC--CAATGTTCTGACGGTTGTGGGCATGGTGGGTGCCAAGAATAACGCACACCCTCTGCATTACAGCCTGGATGGACTGTGGGTCCACTGCCACCCCAGGGCTGCTGCTCACAGAATGAGGCACAGCCTGGGCTCTGCTCTGCACCT-GTGCAGGGAGCAGCCTGGGGCATTCTGTGGATTTGGGGATAGGTATGATTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183025738 289 - 183735486 TCCTGGAAGCTTCAGTGTCAGACAGTGTGGAGTTATGCTTTTTCTCTTTCAGGGGCAGAAAATTCCAGAGCTGGTGAGCTGCAGGATGACCCCC--CAATGTTCTGATGGTTGTGGGCATGGTGGGTGCCAAGAATAACGCACACCCTCTGCATTACAGCCTGGATGGACTGTGGGTCCACTGCCACCCCAGGGCTGCTGCTCACAGAATGAGGCACAGCCTGGGCTCTGCTCTGCACCT-GTGCAGGGAGCAGCCTGGGGCATTCTGTGGATTTGGGGATAGGTATGATTC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539388 288 - 121039945 TCCTGGAGGC-TCAGTGTCAGACAGTGTGGAGTTATGCTTTTCCTCTTTCGGGGGCAGAAAATTCCAGAGCTGGTGAGCTGCAGGATGACCCCC--CAATGTTCTGACGGTTGTGGGTGTGGTGGGTGCCAAGAATAACGCACACCCTCTGCATTCCAGCCTGGATGGGCTGTGGGTCCACTGCCACCCCAGGGCTGCTGCTCAGAGAATGAGGCACAGCCTGGGCTCCACTCTGCACCT-GTGCAGGGAGCAGCCTGGGGTATTCCGTGGATTTGGGGATAGGTATGATTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179494802 288 - 180051392 TCCTGGAGGCTTCAGTGTCAGACAGTGTGGAGTTA-GCTTTTCCTCTTTCTGGGGCAGAAAATTCCAGAGCTGGTGAACTGCAGGATGACCCCC--CAACGTGCTGACAGTTGTGGGTGTGGTGGGTGCCGAGAATAACACACACCCTCTACTTTCCAGCCTGAATGGGCTGTGAGTCCACTGCCACTTCAGGGCTGCTGCTCAGAGAACGAGGCACAGCCTGGGCTCCATTCCACACAT-GTGCAGGGAGCAGCCTGGGGCATTCTGTGGATTTGGGGACAGGTATGATTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181225994 288 - 181584905 TCCTGGAGGCTTCAGTGTCAGACAGTGTGGAGTTA-GCTTTTCCTCTTTCTGGAGCAGAAAATTCCAGAGCTGGTGAACTGCAGGATGACCCCC--CAATGTGCTGACAGTTGTGGGTGTGGTGGGTGCCGAGAATAACACACACCCTCTACTTTCCAGCCTGAATGGGCTGTGAGTCCACTGCCACTTCAGGGCTGCTGCTCAGAGAACGAGGCACAGCCTGGGCTCCATTCCACACAT-GTGCAGGGAGCAGCCTGGGGCATTCTGTGGATTTGGGGACAGGTATGATTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221010 288 -   1764207 TCCTGGAGGCTTCAGTGTCAGACAGTGTGGAGTTA-GCTTTTCCTCTTTCTGGGGCAGAAAATTCCAGAGCTGGTGAACTGCAGGATGACCCCC--CAATGTGCTGACAGTTGTGGGTGTGGTGGGTGCCGAGAATAACACACACCCTCTACTTTCCAGCCTGAATGGGCTGTGAGTCCACTGCCACTTCAGGGCTGCTGCTCAGAGAACGAGGCACAGCCTGGGCTCCATTCCACAAAT-GTGCAGGGAGCAGCCTGGGGCATTCTGTGGATTTGGGGACAGGTATGATTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239639 289 -  16742782 TCCTGGAGGCTTCAGTGTCAGACAGTGTGGAGTTATGCTTTTCCTCTTTCTGAGGCAGAAAATTCCAGAGCTGGTGAACTGCAGGATGACCCCC--CAATGTGCTGACAGTTGTGGGCGTGGTGGGTGCCGAGAACAACACACACCCTCTACTTTCCAGCCTGGATGGGCTGTGGGTCCACTGCCACCTCAGGGTTGCTGCTCAGAGAACGAGGCACAGCCTGGGCTCCATTTCACACAT-GTGCAGGGAGCAACCTGGGGCATTCTGTGGATTTGGGGACAGGTATGATTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90544822 289 -  91010382 TCCTGGAGGTGTCAGTGTCAGACAGTGTGGAGTTATGCTTTTCCTCTTTCTGAGGCAGAAAATTCCAGAGCTGGTGAACTGCAGGATGACCCCC--CAATGTGCTGACAGTTGTGGGCGTGGTGGGTGCCGAGAATAACACACACCCTCTACTTTCCAGCCTGGATGGGCTGTGGGTCCACTGCCACCTCAGGGTTGCTGCTCAGAGAACGAGGCACAGCCTGGGCTCCATTTCACACAT-GTGCAGGGAGCAACCTGGGGCATTCTGTGGATTTGGGGACAGGTATGATTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      134767 289 -    438239 TCCTGGAGGCTTCAGTGTCAGACAGTGTGGAGTTATGCTTTTCCTCTTTCTGAGGCAGAAAATTCCAGAGCTGGTGAACTGCAGGATGACCCCC--CAATGTGCTGACAGTTGTGGGCGTGGTGGGTGCCGAGAATAATACACACCCTCTACTTTCCAGCCTGGATGGGCTGTGGGTCCACTGCCACCTCAGGGTTGCTGCTCAGAGAACGAGGCACAGCCTGGGCTCCATTTCACACAT-GTGCAGGGAGCAACCTGGGGCATTCTGTGGATTTGGGAACAGGTATGATTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      171959 289 -    514179 TCCTGGAGGCTTCAGTGTCAGACAGTGTGGAGTTATGCTTTTCCTCTTTCTGGGGCAGACAATTCCAGAGCTGGTGAACTGCAGGATGACCCCC--CAATGTGCTGACAGCTGTGGGCGTGGTGGGTGCCGAGAATAACACATACCCTCTACTTTCCAGCCTGGATGGGCTGTGGGTCCACTGCCACCTCAGGGCTGCTGCTCAGAGAACGAGGCACAGCCTGGGCTCCATTCCGCACCT-GTGCAGGGAGCAGCCTGGGGCATTCTGTGGATTTGGGGACAGGTATGATTC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15983011 288 +  16417988 -CCTGGAATCTTCAGTGTCAGACAGTGTGGAGTCACGCTCTCCCTCTTTCTGGGGCAGAAAGCTCCAGAGCT-GTGAGCTGCAGGATGACCCCCCACAATGTGCCGACTGTTGTGTGCATGGTGGGTACTAAGAATAACACACGCCCTCTGCATTCCAGCCTGGACGGGCTGTGGGTCCACCGCCACCCCAGGGCTGCTGCTGAGAGAGTGAGTCACGGCCTGGGCTCCATTCTGGACCT-GTGTAGGGAG-GCCCTGGGGTATTATGTGGATTTGAAGATAGGTATGATTC
i saiBol1.JH378155         C 0 I 318
s cebCap1.NW_016108158v1       63404 288 +    298490 CCCTGGAGTCTTCAGTGTCAGACAGTGTGGAGTCACGCTCTCCCTCTTTCTGGGGCAGAAAAGTCCAGAGCT-ATGAGCTGCAGGATGACCCTCCGTAATGTGCTGACTGTTGTGTGCATGGTGGGTGCTAAGAATTACACACGCCTTCTGCA-TCCAGCCTGGATGGGCTGTGGGTCCACCGCCACCGCAGGGCTGCTGCTGAGAGAGTGAGTCACGGCTGGGGCTCCATTCTGGACCT-GTGCAGGGAG-GCCCTGGGGTTTTCTGTGGATTTGGAGATAGGTACGATTC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25394759 289 -  25620257 CCCTGGAGCCTTCACTGTCAGACAGTGTGGAGTCACGCTCTCCCTCTTTCTGGGGCAGAAAACTCCAGAGCT-GTGAGCTGCAGGATGACTCCCTGCAATGTGCTGACTGTTGTGTGCGTGGTGGGTGCTGAGAATAACACACGCCCTCTGCATTCCAGCCTGGACGGGCTGTGGGTCCACCACCACCCCAGGGCTGCTGCTGAGAGAATGAGTCACGGCCTGGGCTCCATTCTGGACCT-GTGCAGGGAG-GCCCTGGGGTATTCTGTGGATTTGGAGATAGGTATGAttc
i aotNan1.NW_018503740v1   I 30 C 0
s otoGar3.GL873745           1854175 216 -   2165740 --CTAGAGGCGACA-TCCCACACGGTGT-GATCAAAGC---CCCTCTTCCTGAAG-------------------------GCAGGA-----CCC--GGACATGCCT----------------------------ATCAGGCTCACCTGTAGCACTCCCATCTAGAATGACTGCAG--CCACCACCACTCTACA--TGTTGCCCAGAGCAGTGGTCACAACCGG---TTCATCTGGCACCTCCTCCAGTGAGC--CCCGTGGCACCCTGTGGATTTGGGGATAGATGTGATGT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11702204 256 +  42124431 TCCCGACGGCTT--GGACCGGACGCCAGGGGATCACACCCTCTGT-TCCCGAAGGTGGAAACCTTCCAAACTGGTGAGCCACAAGATAACCCCC---AGCACGCTAACTGCTGTGGG-GAGGTGGGTGCCAAGATTGGCGCATTCCCTTGGTGTCGCGGCCCCGA-GGGATGTGGGTCCCCATTGTTCCCGTGGGTGTTGGCTGCAGGCTGAGTCACGGGCAG--------------CCC------------AGCCCAGGTTCTCCTGTGGGCCGGGGG--TGGGATGGCTA
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=85477.000000
s hg38.chr5_KI270793v1_alt     38150 12 +    126136 CTTGT-TCATTTT
s panTro5.chr5             181305576 12 - 181907262 CTTGT-TCATTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026027 12 - 183735486 CTTGT-TCATTTT
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539676 12 - 121039945 CTCGT-TCATTTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495090 12 - 180051392 CGTGT-TTATTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181226282 12 - 181584905 CGTGT-TTATTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221298 12 -   1764207 CGTGT-TTATTTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239928 12 -  16742782 CGTGT-TCATTTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545111 12 -  91010382 CGTGT-TCATTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135056 12 -    438239 CTTGT-TCATTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172248 12 -    514179 CGTGT-TCATTTT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15983617 12 +  16417988 CTTGT-TCATTTT
i saiBol1.JH378155         I 318 C 0
s cebCap1.NW_016108158v1       63692 12 +    298490 CTTAT-TCAtttt
i cebCap1.NW_016108158v1   C 0 I 326
s aotNan1.NW_018503740v1    25395048 12 -  25620257 cttat-tcatttt
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1854391 10 -   2165740 --CTC-TCACTTA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11702460 13 +  42124431 TGTGTCTCACTCT
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=9555.000000
s hg38.chr5_KI270793v1_alt     38162 1 +    126136 T
s panTro5.chr5             181305588 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026039 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539688 1 - 121039945 T
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495102 1 - 180051392 T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181226294 1 - 181584905 T
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221310 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239940 1 -  16742782 T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545123 1 -  91010382 T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135068 1 -    438239 T
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172260 1 -    514179 T
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15983629 1 +  16417988 T
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25395060 1 -  25620257 t
i aotNan1.NW_018503740v1   C 0 I 325
s otoGar3.GL873745           1854401 1 -   2165740 T
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11702473 1 +  42124431 T
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1       63704 326 +    298490 I
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200 0 +    698298 C

a score=5362.000000
s hg38.chr5_KI270793v1_alt     38163 1 +    126136 A
s panTro5.chr5             181305589 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026040 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539689 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495103 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181226295 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221311 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239941 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545124 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135069 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172261 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15983630 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1854402 1 -   2165740 G
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11702474 1 +  42124431 A
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25395061 325 -  25620257 I
e cebCap1.NW_016108158v1       63704 326 +    298490 I
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200 0 +    698298 C

a score=96182.000000
s hg38.chr5_KI270793v1_alt     38164 10 +    126136 TTTCAAGGTT
s panTro5.chr5             181305590 10 - 181907262 TTTCAAGGTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026041 10 - 183735486 TTTCAAGGTT
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539690 10 - 121039945 TTTCAAGGTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495104 10 - 180051392 TTTCAAGGTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181226296 10 - 181584905 TTTCAAGGTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221312 10 -   1764207 TTTCAAGGTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239942 10 -  16742782 TTTCAAGGTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545125 10 -  91010382 TTTCAAGGTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135070 10 -    438239 TTTCAAGGTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172262 10 -    514179 TTTCAAGGTT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15983631 10 +  16417988 TTTCAAGGTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       64030 10 +    298490 TTTCAAGGTT
i cebCap1.NW_016108158v1   I 326 C 0
s aotNan1.NW_018503740v1    25395386 10 -  25620257 TTTCAAGGTT
i aotNan1.NW_018503740v1   I 325 C 0
s otoGar3.GL873745           1854404 10 -   2165740 TGTCAAGGTT
i otoGar3.GL873745         I 1 I 1745
s canFam3.chr34             11702475  9 +  42124431 CTTCAGGGT-
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=286721.000000
s hg38.chr5_KI270793v1_alt     38174 38 +    126136 ATAGACTGAAAACATCATCATCATTTCTGACCCTAATG
s panTro5.chr5             181305600 38 - 181907262 ATAGACTGAAAACATCATCATCATTTCTGACCCTAATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026051 38 - 183735486 ATAGACTGAAAACATCATCATCATTTCTGACCCTAATG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539700 38 - 121039945 ATAGACTGAAAACATCATCATCATTTCTGACCCTAATG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495114 38 - 180051392 ATAGACTGAAAACATCATGATCATTTCTGACCCTGATG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181226306 37 - 181584905 ATAGACTGAAAACATCATGAT-ATTTCTGACCCTGATG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221322 38 -   1764207 ATAGACTGAAAACATCATGATCATTTCTGACCCTGATG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239952 38 -  16742782 ATAGACTGAAAACATCATAATCATTTCTGACCCTGATG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545135 38 -  91010382 ATAGACTGAAAACATCATGATAATTTCTGACCCTGATG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135080 38 -    438239 ATAGACTGAAAACATCATAATCATTTCTGACCCTGATG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172272 38 -    514179 ATAGACTGAAAACATCATGATCATTTCTGACCCTGATG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15983641 38 +  16417988 ACAGAGTGAAAACATCATCATCATTTCTGACCCCAAAG
i saiBol1.JH378155         C 0 I 1833
s cebCap1.NW_016108158v1       64040 38 +    298490 ATAGACTGAAAACATCATCATCATTTCTCACCCGAATG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25395396 38 -  25620257 GTAGACTGAAAACATCATCATGATTTCTGACCTCAATG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11702484 36 +  42124431 -ACGGCTGAAAACATCATCAATATTTTAAAATCTACT-
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1854414 1745 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=19180.000000
s hg38.chr5_KI270793v1_alt     38212 2 +    126136 CC
s panTro5.chr5             181305638 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026089 2 - 183735486 CC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539738 2 - 121039945 CC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495152 2 - 180051392 CC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181226343 2 - 181584905 CC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221360 2 -   1764207 CC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239990 2 -  16742782 CC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545173 2 -  91010382 CC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135118 2 -    438239 CC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172310 2 -    514179 CC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15985512 2 +  16417988 CC
i saiBol1.JH378155         I 1833 C 0
s cebCap1.NW_016108158v1       64078 2 +    298490 CC
i cebCap1.NW_016108158v1   C 0 I 2111
s aotNan1.NW_018503740v1    25395434 2 -  25620257 CC
i aotNan1.NW_018503740v1   C 0 I 1839
s canFam3.chr34             11702520 1 +  42124431 -C
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1854414 1745 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200 0 +    698298 C

a score=73565.000000
s hg38.chr5_KI270793v1_alt     38214 10 +    126136 TCGACAGACA
s panTro5.chr5             181305640 10 - 181907262 TCGACAGACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026091 10 - 183735486 TCGACAGACA
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539740 10 - 121039945 TCGACAGACA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495154 10 - 180051392 TCGACAGACG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181226345 10 - 181584905 TCGACAGACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221362 10 -   1764207 TCGACAGACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      239992 10 -  16742782 TCGACAGACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545175 10 -  91010382 TCGACAGACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135120 10 -    438239 TCGACAGACA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172312 10 -    514179 TCGACAGACA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15985514 10 +  16417988 TTGACAGATG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25397275 10 -  25620257 TCGACAGATG
i aotNan1.NW_018503740v1   I 1839 C 0
s canFam3.chr34             11702521 10 +  42124431 TCTACAAACA
i canFam3.chr34            C 0 I 3063
e otoGar3.GL873745           1854414 1745 -   2165740 I
e cebCap1.NW_016108158v1       64080 2111 +    298490 I
e calJac3.chr2             203820808 1001 + 204313951 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=99206.000000
s hg38.chr5_KI270793v1_alt     38224 14 +    126136 CAGAAGGCCTCACA
s panTro5.chr5             181305650 14 - 181907262 CAGAAGGCCTCACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026101 14 - 183735486 CAGAAGGCCTCACA
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539750 14 - 121039945 CAGAAGGCCTCACA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495164 14 - 180051392 CAGAAGGCCTCACA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181226355 14 - 181584905 CAGAAGGCCTCACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221372 14 -   1764207 CAGAAGGCCTCACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240002 14 -  16742782 CAGAAGGCCTCATA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545185 14 -  91010382 CAGAAGGCCTCACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135130 14 -    438239 CAGAAGGCCTCATA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172322 14 -    514179 CAGAAGGCCTCACA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15985524 14 +  16417988 CAGAAGACCTCACA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25397285 14 -  25620257 CAGAAGACCTCACA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1854414 1745 -   2165740 I
e cebCap1.NW_016108158v1       64080 2111 +    298490 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=1407855.000000
s hg38.chr5_KI270793v1_alt     38238 231 +    126136 CCTCTGCCCTCCCCCAAAGATGTCACGGGAAACGTC---AACAGAACATCCTTGTCACCACTTCATTTTCACCCACACAGCATTTTGACGTGTTGCAGAAACACAGCACAG-CACTGGCAGGTGTTCTG--CAG-----------GAAGACAC-------------GTGTGTGAATAA-TGTGTCCATAAA-----------AACAATGTAAAACAATTGACAAAAATGACAATTAGTATCAGGAGGCTTGGCCGCTGGGGGAAGATGTAAAA
s panTro5.chr5             181305664 231 - 181907262 CCTCTGCCCTCCCCCAAAGATGTCACAGGAAACATC---AACAGAACATCCTTGTCACCACTTCATTTTCACCCACACAGCATTTTGACGTGTTGCAGAAACACAGCACGG-CACTGGCAGGTGTTCTG--CAG-----------GAAGACAC-------------GTGTGTGAATAA-TGTGTCCATAAA-----------AACAATGTAAAACAATTGACAAAAATAACAATTAGTATCAGGAGGCCTGGCCGCTGGGGGAAGATGTAAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026115 231 - 183735486 CCTCTGCCCTCCCCCAAAGATGTCACAGGAAACATC---AACAGAACATCCTTGTCACCACTTCATTTTCACCCACACAGCATTTTGACGTGTTGCAGAAACACAGCACGG-CACTGGCAGGTGTTCTG--CAG-----------GAAGACAC-------------GTGTGTGAATAA-TGTGTCCATAAA-----------AACAATGTAAAACAATTGACAAAAATAACAATTAGTATCAGGAGGCCTGGCCGCTGGGGGAAGATGTAAAA
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539764 222 - 121039945 CCTGTGCCCTCCCCCAAAGATTTCACAGGAAATGTC---AACAGAACATCCTTGTCACCACTTCATTTTCACCCACACGGCATTTTGATGTGTCACAGAAACACAGCACAG-CACTGGCAGGTGTTCTG--CAG-----------GAAGACAC-------------GTGTGTG---GA-CGTGTCCCTAAA-----------AACAATGTAAGACAATTGACAAAAATAACAATT------AGGAGGCTTGGCCGCTGGGGAAAGACGTAAAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495178 231 - 180051392 CCTGTGCCCTCCCCCAAAGATTTCCTAGGAAACCTC---AACAGAACATCTTAGTCACCACTTCATTTTCGCCCACACAACATTTTGACGTGTCGCAGAAACACAGCACAG-CACTGGCAGGTGTTCTG--CAG-----------GAAGACAC-------------GTGTGTGAATGA-TGCATCCATAAA-----------AACAATGTAAGATAATTGACAAAAATAACAATTAGTATCAGGAGGCTTGGCCACTGGGGCAAGATGTAAAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181226369 231 - 181584905 CCTGTGCCCTCCCCCAAAGATTTCCTAGGAAACCTC---AACAGAACATCTTTGTCACCACTTCATTTTCGCCCACACAACATTTTGACGTGTCGCAGAAACACAGCACAG-CACTGGCAGGTGTTCTG--CAG-----------GAAGACAC-------------GTGTGTGAATGA-TGCGTCCATAAA-----------AACAATGTAAGACAATTGACAAAAATAACAATTAGTATCAGGAGGCTTGGCCACTGGGGCAAGATGTAAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221386 231 -   1764207 CCTGTGCCCTCCCCCAAAGATTTCCTAGGAAACCTC---AACAGAACATCTTTGTCACCACTTCATTTTCGCCCACACAACATTTTGACGTGTCGCAGAAACACAGCACAG-CACTGGCAGGTGTTCTG--CAG-----------GAAGACAC-------------GTGTGTGAATGA-TGCGTCCATAAA-----------AACAATGTAAGATAATTGACAAAAATAACAATTAGTATCAGGAGGCTTGGCCGCTGGGGCAAGATGTAAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240016 231 -  16742782 TCTGTGCCCTCCCCCAAAGATTTCATAGGAAACCTC---AACAGAACATCTTTGTCACCACTTCATTTTCGCCCACACAACATTTTGACGTGTCGCAGAAACACAGCACAG-CACTGGCAGGTGTTCTG--CAG-----------GAAGACAC-------------GTGTGTGAATGA-TGCGTCCGTAAA-----------AACAATGTAAGACAGTTGACAAAAATAACAATTAGTATCAGGAGGCTTGGCTGCTGGGGCAAGATGTAAAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545199 231 -  91010382 CCTGTGCCCTCCCCCAAAGATTTCATAGGAAACCTC---AACAGAACATCTTTGTCACCACTTCATTTTCGCCCACACAACATTTTGACGTGTCGCAGAAACACAGCACAG-CACTGGCAGGTGTTCTG--CAG-----------GAAGACAC-------------GTGTGTGAATGA-TGCGTCCATAAA-----------AACAATGTAAGACAGTTGACAAAAATAACAATTAGTATCAGGAGGCTTGGCCGCTGGGGCAAGATGTAAAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135144 231 -    438239 CGTGTGCCCTCCCCCAAAGATTTCATAGGAAACCTC---AACAGAACATCTTTGTCACCACTTCATTTTCGCCCACACAACATTTTGACGTGTCGCAGAAACACAGCACAG-CACTGGCAGGTGTTCTG--CAG-----------GAAGACAC-------------GTGTGTGAATGA-TGCGTCCATAAA-----------AACAATGTAAGACAGTTGACAAAAATAACAATTAGTACCAGGAGGCTTGGCCGCTGGGGCAAGATGTAAAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172336 231 -    514179 CCTGCGCCCTCCCCCAAAGATTTCATAGGAAACCTC---AACAGAACATCTTTGTCACCACTTCATTTTCGCCCACACAACATTTTGACATGTTGCAGAAACACAGCACAG-CACTGGCAGGTGTTATG--CAG-----------GAAGACAC-------------GCATGTGAAGGA-TGTGTCCATAAA-----------AACAATGTAAGACAGTTGACAAAAATAACAATTAGTCTCAGGAGGCTTGGCCGCTGGGGCAAGATGTAAAA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15985538 224 +  16417988 CC-GTGTCCTCCCGCGAAGCTCTCAGAGAAAACATC---AACAGAACACCCT-GTCAGCACTTCATTTCCGCCCGCACGGCGTATCAGCATGTCACAGAAAC-CCGCACAG-CACCGGCAGGCG-TTGG--CAG-----------GAGGACAC---------------GTGTGAGTGA-CATGGCCGTAAA-----------AACAATGCAAGACAGTTGAC-AAAACAGCAATCAGTACCAGGAGGCCTGACCGGCAGGGAAAGACATAGAC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25397299 227 -  25620257 CCTGTGCCCTCCTGCGAAGCTTTCAGAGAAAACACC---AACAGAGCACCCT-GTCAGCACTTCATTTCCACCCGCACAGCATATCAGCGTGGCACAGAAA--CAGCACAG-CACCGGCAGGTGTTTGG--CAG-----------GGGGACAC-------------ATGTGTGAATGA-CACAGCCATGAA-----------AACAATGCAAGACAGTTGGC-GAAACAATAGTCAGCACCAGGAGGCCTGGCTGGCAGGGAAAGGCGTAAAC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1856159 271 -   2165740 CCTGTGTTCTCAGTCCAAGGTTTGGCCGGGAAAGTAAGGAACAGACCTCCTTTACTGCCTCTTTATCTTTG-CCACACAGTATCTTAGCACATTACAAAAACACCGCCCAGTCTCTGGCAGGTCTTCCGTTCAGATGGTTTATTTGGAGACACACCATGTGAGGGCATGTTTGAATTACTGTTTCTGTAAGTAATTTAAGACAATAGTTTAAGACAATTGACAAAAATCACACTCA-CATAGGACACATTGGAAGGTATGGAAAGACATAAgt
i otoGar3.GL873745         I 1745 C 0
e cebCap1.NW_016108158v1       64080 2111 +    298490 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=511267.000000
s hg38.chr5_KI270793v1_alt     38469 66 +    126136 CCAGGCTAGAATCTCAGCTGTACCCACCGCTGTGCTCTGGGGCAACTCACGGGAGCATGTTCTCCA
s panTro5.chr5             181305895 66 - 181907262 CCAGGCTAGAATCTCAGGTGTACCCACCGCTGTGCTCTGGGGCAACTCACGGGAGCATGTTCTCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026346 66 - 183735486 CCAGGCTAGAATCTCAGCTGTACCCAACGCTGTGCTCTGGGGCAACTCACGGGAGCATGTTCTCCA
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120539986 66 - 121039945 CCAGGCTAGAATCTTGGCTGTACCCACCGCTGTGCTCTGGGGCAACTCACGGGAGCATGTTCTCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495409 66 - 180051392 CTAGGCTAGAATCTCAGCTGTACCCACCGCTGTGCTCTGGGGCAACTCACAGGAGCGTGTTCTCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181226600 66 - 181584905 CTAGGCTAGAATCTCAGCTGTACCCACCGCTGTGCTCTGGGGCAGCTCACAGGAGCGTGTTCTCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      221617 66 -   1764207 CTAGGCTAGAATCTCAGCTGTACCCACCGCTGTGCTCTGGGGCAATTCACAGGAGCGTGTTCTCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240247 66 -  16742782 CTAGGCTAGAATCTCGGCCGTACCCACCGCTATGCTCTGGGGCAACTCAGAGGAGCGTGTTCTCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545430 66 -  91010382 CTAGGCTAGAATCTCGGCTGTACCCACCGCTGTGCTCTGGGGCAACTCACAGGAGCGTGTTCTCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135375 66 -    438239 CTAGGCTAGAATCTCGGCTGTACCCACCGCTGTGCTCTGGGGCAACTCACAGGAGCGTGTTCTCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172567 66 -    514179 CTAGGCTAGAATCTCGGCTGTACCCACCGCTGTGCTCTGGGGCAACTCACAGGAGCGTGTTCTCCA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15985762 65 +  16417988 CCAGGCTAGAACCTCAGCTGCACGCACACCTGTGCCCTGGCGCAAACCAC-GGAGCGTGTTCCCCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       66191 65 +    298490 CCAGGCTAGAATCTCAGCTGCACGCACGGCTGTGCCCTGGCGCAAGCCAT-GGAGCGTGTTCTCCA
i cebCap1.NW_016108158v1   I 2111 C 0
s aotNan1.NW_018503740v1    25397526 65 -  25620257 CCAGGCTAGAATCTCAGCTGCACACACAGCTGTGCCCCGGCGCAAACCAC-GGAGCGTGTTCTCCA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1856430 66 -   2165740 ccaggtttgaatcctggctgctctcacagctgtgatcttgggcaaattacatggggattctctcta
i otoGar3.GL873745         C 0 I 221
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=1823432.000000
s hg38.chr5_KI270793v1_alt     38535 267 +    126136 CCAATTTGCGATGGAATGAGGTCATTACTGGACACGATGGCTGCAAGACAACGCTTCCATATTTCCCATAACAGCCATGTCTGCTGCCTGACAAATGTTGGAAGGACAGACAGGCCGAGACCGGAGGGGTCTGTGCCACACCCCGGACTCCCACCCTCTTAATAAATCCAGGGCTTGGTTTTCACTGCTTTGTCTGGATGAGCCAATCAGCAAGGGATGCACCTGAGCCTCTGTGTGAACTGTGCAGAGCTCTGCATGCAAGA--------------------------------------------CCAC-
s panTro5.chr5             181305961 267 - 181907262 CCAATTTGCGATGGAATGAGGTCATTACTGGACACGATGGCTGCAAGACAACGCTTCCATATTTCCCATAACAGCCATGTCTGCTGCCTGACAAATGTTGGAAGGACAGACAGGCCGAGACCGGAGGGGTCTGTGCCACACCCCGGACTCCCACCCTCTTAATAAATCCAGGGCTTGGTTTTCACTGCTTTGTCTGGATGAGCCAATCAGCAAGGGATGCACCTGAGCCTCTGTGTGAACTGTGCAGAGCTCTGCATGCAAGA--------------------------------------------CCAC-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026412 267 - 183735486 CCAATTTGCGATGGAATGAGGTCATTACTGGACACGATGGCTGCAAGACAACGCTTCCATATTTCCCATAACAGCCATGTCTGCTGCCTGACAAATGTTGGAAGGACAGACAGGCCGAGACCGGAGGGGTCTGTGCCACACCCCGGACTCCCACCCTCTTAATAAATCCAGGGCTTGGTTTTCACTGCTTTGTCTGGATGAGCCAATCAGCAAGGGATGCACCTGAGCCTCTGTGTGAACTGTGCAGAGCTCTGCATGCAAGA--------------------------------------------CCAC-
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540052 266 - 121039945 CCAG-ATGTGATGGAATGAGGTCGTTACTGGACACGATGGCTGCAAGACAACGCTTCCATCTTTCCCATAACAGCCGTGTCTGCTGCCTGACAAACGTTGGAAGGACAGACAGGCCGAGACCGGAGGAGTCTGTGCCACATCCCGGACTCCCACCCTCTTAATAAATCCAGGGCCTGGTTTTCACTGCTTTGTCTGGATGAGCTGACCAGCAAGGGATGCACCTGAGCCTCTGTGTGAACTGTGCTGAGCTCTGCATGCAAGA--------------------------------------------CCAC-
i nomLeu3.chr6             C 0 I 1
s rheMac8.chr6             179495475 266 - 180051392 GCAA-ATGTGATGGAATGAGGTTGTTACTGGACATGGTGGCTGCAAGACCATGCTTCCATCTTTCCCATAACAGCCCTGTCTGCTGCCTGACAAATGTTGGAAGGACAGACAGGCCGAGACCGGGAGGGTCTGTGCCGCACCCCGGACTCCCACCCTCTTGATAAATCCAGGGCCTGGTTTTCACTGCCTTGTCCGGATGAGCCAACCAGCAAGGGATGCACCTGAGTCTCTGTGTGAACTGTGCAGAGCTCTGCATGCAAGC--------------------------------------------CCAC-
i rheMac8.chr6             C 0 I 65
s macFas5.chr6             181226666 310 - 181584905 GCAA-ATGTGATGGAATGAGGTTGTTACTGGACATGGTGGCTGCAAGACCATGCTTCCATCTTTCCCATAACAGCCCTGTCTGCTGCCTGACAAATGTTGGAAGGACAGACAGGCCGAGACCGGGAGGGTCTGTGCCGCACCCCGGACTCCCACCCTCTTGATAAATCCAGGGCCTGGTTTTCACTGCCTTGTCCGGATGAGCCAACCAGCAAGGGATGCACCTGAGTCTCTGTGTGAACTGTGCAGAGCTCTGCATGCAAGCCCACGTATGGAACATGCCATCTGCATGCATGGAACACAGATCCTCCAC-
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      221683 261 -   1764207 GCAA-ATGTGATGGAATGAGGTTGTTACTGGACATGGTGGCTGCAAGACCATGCTTCCATCTTTCCCATAACAGCCCTGTCTGCTGCCTGACAAATGTTGGAAGGACAGACAGGCCGAGACCAGGAGGGTCTGTGCCGCACCCCGGACTCCCACCCTCTTGATAAATCCAGGGCCTGGTTTTCACTGCCTTGTCGGGATGAGCCAACCAGCAA-GGATGCACCTGAG----TGTGTGAACTGTGCAGAGCTCTGCATGCAAGC--------------------------------------------CCAC-
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      240313 266 -  16742782 GCAA-ATGTGATGGAATGAGGTTGTTACTGGACACGGCGGCTGCAAGACCATGCTTCCATCTTTCCCATAACAGCCCTGTCTGCTGCCTGACAAATGTTGGAAGGACAGACAGGCCGAGACCGGAAGGGTCTGTGCCGCACCTCGGACTCCCACCCTCTTGATAAATCCAGGGCCTGGTTTTCACTGCCTTGTCCGGATGAGCCAACCAGCAAGGGATGCACCTGAGTCTCTGTGTGAACTGTGCAGAGCTCTGCATGCAAGC--------------------------------------------CCAC-
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90545496 266 -  91010382 GCAA-ATGTGATGGAATGAGGTTGTTACTGGACACGGTGGCTGCAAGACCATGCTTCCATCTTTCCCATAACAGCCCTGTCTGCTGCCTGACAAATGTTGGAAGGATAGACAGGCCGAGACCGGAAGGGTCTGTGCCGCACCCCGGACTCCCACCCTCTTGATAAATCCAGGGCCTGGTTTTCACTGCCTTGTCCGGATGAGCCAACCAGCAGGGGATGCACCTGAGTCTCTGTGTGAACTGTGCAGAGCTCTGCATGCAAGC--------------------------------------------CCAC-
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      135441 266 -    438239 GCAA-ATGTGATGGAATGAGGTTGTTACTGGACACGGTGGCTGCAAGACCATGCTTCCATCTTTCCCATAACAGCCCTGTCTGCTGCCTGACAAATGTTGGAAGGACAGACAGGCTGAGACCGGAAGGGTCTGTGCCGCACCTCGGACTCCCACCCTCTTGATAAATCCAGGGCCTGGTTTTCACTGCCTTGTCCGGATGAGCCAACCAGCAAGGGATGCACCTGAGTCTCTGTGTGAACTGTGCAGAGCTCTGCATGCAAGC--------------------------------------------CCAC-
i manLeu1.NW_012110441v1   C 0 I 1
s colAng1.NW_012118799v1      172633 266 -    514179 GCAA-ATGTGATGGAATGAGGTTGTTACTGGACACGGTGGCTGCAAGACCATGCTTCCATCTTTCCCATAACAGCTGTGTCTGCTGCCTGACAAATGTTGGAAAGACAGACAGGCCGAGACTGGAGGGCTCTGTGCCGCACCCTGGACTCCCACCCTCTTGATAAATCCAGGGCCTGGTTTTCACTGCCTTGTCCAGATGAGCCAACTAGCAAGGGATGCACCTGAGTCTCTGTGTGAACTGTGCAGAGCTCTGCATGCAAGC--------------------------------------------CCAT-
i colAng1.NW_012118799v1   C 0 I 1
s saiBol1.JH378155          15985827 266 +  16417988 GCAG-ATGCGATGGCATGAGGCCGTCACTGCGCACGGTGGCTGCGAGCCCGCGCCTCCATCTTTTCTGTGACAGGCATGTCTGCTGCCTGTCAAATGTTGGAAGGACAGACATGCGGAGACAGGCCGGGTCTGTGCTGCAACCC-AATTCCCACCCTCTTGATAATTCCAGGGCCAGGGTCTCAGGGTCTTCTCTGGATGAGCTGACCAGCAAGGGGTGCTCCTGAGTTTCTGTGTGAACTGTGCAGCGCTCCGCGTGCAAGA--------------------------------------------CCAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       66256 266 +    298490 CCAA-ATGCGATGGCACGAGGCCATCACTGCACACGGTGGCTACAAGGCCACGCCTCCATCTTTTCCGTAACAGCCGTGTCTGCTGCCTGTCAAATGTTGGAAGGACGGACAGACGAAGACAGGCGGGGTCTGTGCCGCAACCC-AACTCCCACCCTCTTGATAATTCCAAGGCCAGGGTCTCAGTGTCTTCTCTGGACGAGCTGACCAGCAAGGGGTGCTCCTGAATTTCTGTGTGAACCGTGAAGTGCTCTGCATGCAAGA--------------------------------------------ACAGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25397591 264 -  25620257 CCAA-ATGCGACAGCGTGAGACCATCACTGCACACGGTGGCTGCGAGGCCGCGCCTCCATCTTTTCCGTAACATCTGTGTCTGCTGCCTGTCAAATGTTGGAAGGACAGACAGGCGGAGACAGGTGGGCTCTGTGCCGCAACCC-AACTCCCACCCTCTTGATAATTCCAGGGCCAGGGTCTCAGAGAAG--ACTGGATGAGCTGACCAGCAAGGGGTGCTCCTGAGTTTCTGTGTGAACTGTGCAGCGCTCTGCATGCAAGA--------------------------------------------CCAGG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=190631.000000
s hg38.chr5_KI270793v1_alt     38802 34 +    126136 TATGGAATACGCCACTTCCATGCATGGAACACAC
s panTro5.chr5             181306228 34 - 181907262 TATGGAATACGCCACTTCCATGCATGGAACACAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026679 34 - 183735486 TATGGAATACGCCACTTCCATGCATGGAACACAC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540319 34 - 121039945 TATGGAATATGCCACCTCCATGCATGGAACACAC
i nomLeu3.chr6             I 1 C 0
s macFas5.chr6             181226977 34 - 181584905 TATGGAACATGCCACCTCCATGCACGGAACACAC
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      221945 34 -   1764207 TATGGAACAGGCCACCTCCATGCATGGAACACAC
i macNem1.NW_012012389v1   I 1 M 678
s cerAty1.NW_012009470v1      240580 12 -  16742782 TATGGAACATGC----------------------
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90545763 34 -  91010382 TATGGAACATGCCACCTCCACGCATGGAACACAC
i chlSab2.chr4             I 1 C 0
s manLeu1.NW_012110441v1      135708 34 -    438239 TATGGAACATGCCAGCTCCATGCATGGAACACAC
i manLeu1.NW_012110441v1   I 1 C 0
s colAng1.NW_012118799v1      172900 34 -    514179 TATGGAACATGCCACCTCCATGCCTGGAACACAC
i colAng1.NW_012118799v1   I 1 C 0
s saiBol1.JH378155          15986093 34 +  16417988 TATGGAATATACCACCTCCATGCATGGAACACAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       66522 34 +    298490 TATGGAATACGCCACCTCCATGCATGGAACACAC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25397855 34 -  25620257 TATGGAATATGCCACCTCCATGCATGGAACACAC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e rheMac8.chr6             179495741 65 - 180051392 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=-1079.000000
s hg38.chr5_KI270793v1_alt     38836 1 +    126136 A
s panTro5.chr5             181306262 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026713 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540353 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181227011 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      240592 1 -  16742782 C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545797 1 -  91010382 C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135742 1 -    438239 C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172934 1 -    514179 C
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986127 1 +  16417988 A
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       66556 1 +    298490 A
i cebCap1.NW_016108158v1   C 0 I 1031
s aotNan1.NW_018503740v1    25397889 1 -  25620257 A
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macNem1.NW_012012389v1      221979 678 -   1764207 M
e rheMac8.chr6             179495741 65 - 180051392 I
e gorGor5.CYUI01015805v1      114200 0 +    698298 C

a score=57253.000000
s hg38.chr5_KI270793v1_alt     38837 11 +    126136 ACTTCCACATA
s panTro5.chr5             181306263 11 - 181907262 ACTTCCACATA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026714 11 - 183735486 ACTTCCACATA
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540354 11 - 121039945 TCCTCCACTTA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181227012 11 - 181584905 ACCTCCACATA
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      240593 11 -  16742782 ACCTCCACATA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545798 11 -  91010382 ACCTCCACATA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135743 11 -    438239 ACCTCCACATA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172935 11 -    514179 ACCTCCACATA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986128 11 +  16417988 ACCTCCACGTA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       67588 11 +    298490 ACCTCCACACA
i cebCap1.NW_016108158v1   I 1031 C 0
s aotNan1.NW_018503740v1    25397890 11 -  25620257 ACCTCCACGTA
i aotNan1.NW_018503740v1   C 0 I 198
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macNem1.NW_012012389v1      221979 678 -   1764207 M
e rheMac8.chr6             179495741 65 - 180051392 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=120882.000000
s hg38.chr5_KI270793v1_alt     38848 41 +    126136 TGGAACACATCACCTCCAG----------------------GCATGGAACATGCCACCTCCAG
s panTro5.chr5             181306274 63 - 181907262 TGGAACACAGCACCTCCAGGCATGGAACATGCCACCTCCATGCATGGAACATGCCACCTCCAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026725 63 - 183735486 TGGAACACAGCACCTGCAGGCATGGAACATGCCACCTCCATGCATGGAACATGCCACCTCCAT
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540365 61 - 121039945 TGGAACACACCACCTCCACGTATAGAACAG--CACCTTCACGTATGGAACACACCACCTCCAC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181227023 41 - 181584905 CAGAACATAGGGCCTCCAC----------------------GTATGGAACATGCCACCTCCAT
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      240604 41 -  16742782 CAGAACATAGGACCTCCAT----------------------GTATGGAACAGGCCACCTCCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545809 41 -  91010382 TAGAACATAGGACCTCCAT----------------------GTATGGAACAGGCCACCTCCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135754 41 -    438239 CAGAACATAGGACCTCCAT----------------------GTATGGAACAGGCCACCTCCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172946 41 -    514179 TAGAACATAGGACCTCCAT----------------------GTATGGAACAGGCCACCTCCAC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986139 41 +  16417988 TGCAACACTCCACTTCGAC----------------------ACACGAAACACTCCACCTCCAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       67599 41 +    298490 CGGAACACCCCACCTCCAC----------------------ACACGGAACACCCCACCTCCAC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25398099 19 -  25620257 --------------------------------------------TGGAACACTCCACCTCCGC
i aotNan1.NW_018503740v1   I 198 C 0
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macNem1.NW_012012389v1      221979 678 -   1764207 M
e rheMac8.chr6             179495741 65 - 180051392 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=185591.000000
s hg38.chr5_KI270793v1_alt     38889 75 +    126136 GCATGGAACACACCACCTCCACATGTGGAACACAGATCCTCCACATATGGAACACACCACCTCC-----TGG-----------------CATGGAAC
s panTro5.chr5             181306337 49 - 181907262 GCATGGAACACACCACCTCCACATGTGGAACACAGATCCTCCACATATG------------------------------------------------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026788 49 - 183735486 GCATGGAACACACCACCTCCACATGTGGAACACGGATCCTCCACATATG------------------------------------------------
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540426 70 - 121039945 ATATGGAACACGCCATCTCTATGCATGGAACATGCCACCTCCACACGTAGAACACAGATCCTCCAC-TATG--------------------------
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181227064 97 - 181584905 GCATGGAACACACCACCTCCACATACAGAACATAGGGCCTCCATGTATGGAACAGGCCACCTCCATGCATGGAACACACCACCTCCACATACAGAAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      222659 97 -   1764207 GCATGGAACACACCACCTCCACATACAGAACATAGGGCCTCCATGTATGGAACAGGCCACCTCCACGTATGGAACATGCCATCTGCATGCATGGAAC
i macNem1.NW_012012389v1   M 678 C 0
s cerAty1.NW_012009470v1      240645 52 -  16742782 GTATGGAACATGCCATCTGCATGCATGGAACACAGATCCTCCACATATGGAA---------------------------------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545850 52 -  91010382 ATATGGAACATGCCATCTGCATGCATGGAACACAGATCCTCCACATATGGAA---------------------------------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135795 52 -    438239 GTATGGAACATGCCATCTGCATGCATGGAACACAGATCCTCCACATATGGAA---------------------------------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      172987 52 -    514179 GTATGGAACATGCCATCTGCATGCATGGAACACAGATCCTCCACATATGGAA---------------------------------------------
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986180 75 +  16417988 GTATAGAACACACCACCTCCACACACGGAACACTCCACCTCCACACACGGAACACTCCACCTCCATGTATAGAAC----------------------
i saiBol1.JH378155         C 0 M 372
s cebCap1.NW_016108158v1       67640 75 +    298490 GTATGGAACACCCCACCTCCACGTATGGAACACCCCACCTCCACACGCGGAACACCCCACCTCCACACGCGGAAC----------------------
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25398118 51 -  25620257 GCATGGAACACACCACCTCCCCGCATGGAACACTCCACCTCCCCACGTGGA----------------------------------------------
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e rheMac8.chr6             179495741 65 - 180051392 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=1080.000000
s hg38.chr5_KI270793v1_alt     38964 9 +    126136 ATGCAACCT
s macFas5.chr6             181227161 9 - 181584905 ATAGGGCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      222756 9 -   1764207 ACAGATCCT
i macNem1.NW_012012389v1   C 0 C 0
s cebCap1.NW_016108158v1       67715 9 +    298490 ACCCCACCT
i cebCap1.NW_016108158v1   C 0 C 0
e panTro5.chr5             181306386 0 - 181907262 C
e aotNan1.NW_018503740v1    25398169 0 -  25620257 C
e otoGar3.GL873745           1856496 221 -   2165740 I
e saiBol1.JH378155          15986255 372 +  16417988 M
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120540496 0 - 121039945 C
e manLeu1.NW_012110441v1      135847 0 -    438239 C
e chlSab2.chr4              90545902 0 -  91010382 C
e cerAty1.NW_012009470v1      240697 0 -  16742782 C
e colAng1.NW_012118799v1      173039 0 -    514179 C
e rheMac8.chr6             179495741 65 - 180051392 I
e gorGor5.CYUI01015805v1      114200 0 +    698298 C
e panPan2.chr5             183026837 0 - 183735486 C

a score=327936.000000
s hg38.chr5_KI270793v1_alt     38973  79 +    126136 CCACATATAGAACACACCACCTCCTGGCATGGAACATGCAAC----------------------CTCCACAT----------------------ATGGAACATGCCATCTCCACGTATGGAAC
s panTro5.chr5             181306386  70 - 181907262 ---------GAACACACCACCTCCTGGCATGGAACATGCAAC----------------------CTCCACAT----------------------ATGGAACATGCCATCTCCACGTATGGAAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026837  70 - 183735486 ---------GAACACACCACCTCCTGGCATGGAACATGCAAC----------------------CTCCACAT----------------------ATGGAACATGCCATCTCCACGTATGGAAC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540496  70 - 121039945 ---------GAACACACCACCTCCTGGCATGGAACATGCCAT----------------------CTCCACGT----------------------ATGGAACATGCCACCTCCACGTATGGAAC
i nomLeu3.chr6             C 0 T 109
s macFas5.chr6             181227170 123 - 181584905 CCATGTATGGAACAGGCCACCTCCACGTATGGAACATGCCATCTGCATGCATGGAACACAGATCCTCCACATATGGAACACACCACCTCCTGGCATGGAACATGCCATCTCCACACACAGAAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      222765  79 -   1764207 CCACATATGGAACACACCACCTCCTGGCATGGAACATGCCAT----------------------CTCCACAT----------------------ATGGAACATGCCATCTCCACACACAGAAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240697  67 -  16742782 ------------CACACCACCTCCTGGCATGGAACATGCCAT----------------------CTCCACAC----------------------ATGGAACATGCCATCTCCACACACAGAAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545902  67 -  91010382 ------------CACACCACCTCCTGGCATGGAACATGCCAT----------------------CTCCACAC----------------------ACAGAACACACCACCTCCACACGTGGAAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135847  67 -    438239 ------------CACACCACCTCCTGGCATGGAACATGCCAT----------------------CTCCACAT----------------------ATGGAACATGCCATCTCCACACACAGAAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173039  67 -    514179 ------------CACACCACCTCCTGGCATGGAACATGCCAT----------------------CTCCATGT----------------------ATGGAACATGCCATCTCCACACACAGAAC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986631  57 +  16417988 ----------------------CCACACACGGAACACTCCAC----------------------CTCCACAC----------------------ACGGAACACTCCACCTCCACACTTGGAAT
i saiBol1.JH378155         M 372 C 0
s cebCap1.NW_016108158v1       67724  79 +    298490 CCACGTATGGAACACCCCACCTCCACATATGGAACACCCCAC----------------------CTCCACGC----------------------GCGGAACACCCCACCTCCACGCGCGGAAC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25398169  66 -  25620257 -------------ACACCACCTCCCCACGTGGAACAATCCAC----------------------CTCCACAT----------------------GTGGAACACACCACCTCCACACGTGGAAC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e rheMac8.chr6             179495741  65 - 180051392 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=176577.000000
s hg38.chr5_KI270793v1_alt     39052 37 +    126136 ACGCCATCTCCACAC---------------------ATAAAACACACCACCTCCACGC
s panTro5.chr5             181306456 37 - 181907262 ACACCATCTCCACAC---------------------ATAAAACACACCACCTCCACGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026907 37 - 183735486 ACACCATCTCCACAC---------------------ATAAAACACACCACCTCCACGC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540457 58 - 121039945 ATGCCACCTCCACACGTAGAACACAGATCCTCCACTATGGAACACACCACCTCCTGGC
i nomLeu3.chr6             T 109 I 51
s macFas5.chr6             181227293 37 - 181584905 ACTCCACCTCCACAC---------------------GTGGAACATGCTACCTCCACAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      222844 37 -   1764207 ACTCCACCTCCACAC---------------------GTGGAACATGCTACCTCCACAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240764 37 -  16742782 ACTCCACCTCCACAC---------------------GTGGAACATGCTACCTCCACAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90545969 37 -  91010382 ATGCTACCTCCACAC---------------------ATGGAACGTGCCACCTCCACGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135914 37 -    438239 ACTCCACCTCCACAC---------------------GTGGAACATGCTACCTCCACAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173106 36 -    514179 AATC-ACCTCCACAT---------------------GTGGAACATGCTACCTCCACAC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986688 37 +  16417988 GCTCCACCTCCAAGC---------------------GTGGAACACATCACCTCCATGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       67803 37 +    298490 ACCCCACCTCCACGC---------------------GCGGAACACCCCACCTCCACGT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25398235 37 -  25620257 ACTCCACCTCCCCAC---------------------GTGGAACACTCCACCTCCACAC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e rheMac8.chr6             179495741 65 - 180051392 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=66710.000000
s hg38.chr5_KI270793v1_alt     39089 29 +    126136 ATGGAACATGCCACCTCCACGT-----ATGGAAC
s panTro5.chr5             181306493 29 - 181907262 ATGGAACATGCCACCTCCACAT-----ATGGAAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026944 29 - 183735486 ATGGAACATGCCACCTCCACAT-----ATGGAAC
i panPan2.chr5             C 0 C 0
s macFas5.chr6             181227330 29 - 181584905 ATGGAACGTGCCACCTCCACGT-----ATGGAAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      222881 29 -   1764207 ATGGAACGTGCCACCTCCATGT-----ATGGAAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240801 29 -  16742782 ATGGAACGTGCCACCTCCACGT-----ATGGAAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546006  7 -  91010382 ATGGAAC---------------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      135951  7 -    438239 ATGGAAC---------------------------
i manLeu1.NW_012110441v1   C 0 I 1634
s colAng1.NW_012118799v1      173142 29 -    514179 ATGCAATGTGCCACCTCCACAT-----ATGGAAC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986725 34 +  16417988 ATGGAACACTCCATCTCCATGCAAGTAACATAAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       67840 34 +    298490 GTGGAACACTCCATCTCCATGCAAGTAACGTAAC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25398272 29 -  25620257 GTGGAACTCTCCACCTCCACGC-----GTGGAAC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120540515 51 - 121039945 I
e rheMac8.chr6             179495741 65 - 180051392 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=72273.000000
s hg38.chr5_KI270793v1_alt     39118 11 +    126136 ACACCAACTCC
s panTro5.chr5             181306522 11 - 181907262 ACACCAACTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026973 11 - 183735486 ACACCAACTCC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540566 11 - 121039945 ACACCACCTCC
i nomLeu3.chr6             I 51 C 0
s macFas5.chr6             181227359 11 - 181584905 ACACCACCTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      222910 11 -   1764207 ACACCACCTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240830 11 -  16742782 ACACCACCTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546013 11 -  91010382 ACACCACCTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137592 11 -    438239 ACACCACCTCC
i manLeu1.NW_012110441v1   I 1634 C 0
s colAng1.NW_012118799v1      173171 11 -    514179 ACACCACCTCC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986759 11 +  16417988 ACAGCACCTCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       67874 11 +    298490 ATACCACCTCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25398301 11 -  25620257 ACACCACCTCC
i aotNan1.NW_018503740v1   C 0 I 703
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e rheMac8.chr6             179495741 65 - 180051392 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=55916.000000
s hg38.chr5_KI270793v1_alt     39129 11 +    126136 ATGTGT-CAGGG
s panTro5.chr5             181306533 11 - 181907262 ACGTGT-CAGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026984 11 - 183735486 ACGTGT-CAGGG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540577 11 - 121039945 ATATGT-CAGGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181227370 11 - 181584905 GTGTGT-CAGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      222921 11 -   1764207 ATGTGT-CAGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240841 11 -  16742782 ATGTGT-CAGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546024 11 -  91010382 ATGTGT-CAGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137603 11 -    438239 ATGTGT-CAGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173182 11 -    514179 ATGTGT-CAGGG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986770 12 +  16417988 ATGTGTCCAGGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       67885 12 +    298490 ATGTGTCCAGGG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25398312 703 -  25620257 I
e otoGar3.GL873745           1856496 221 -   2165740 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e rheMac8.chr6             179495741 65 - 180051392 I
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=405223.000000
s hg38.chr5_KI270793v1_alt     39140  73 +    126136 CCTGCTCTGTGCACTGCAAGGTGGCCT--------------------------GGAAGGATCTGGAAGAGCAAGTT-CACAAGCAGTTGTGGCCAGAGCT
s panTro5.chr5             181306544  73 - 181907262 CCTGCTCTGTGCACTGCAAGGTGGCCT--------------------------GGAAGGATCTGGAAGAGCAAGTT-CACAAGCAGTTGTGGCCAGAGCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183026995  73 - 183735486 CCTGCTCTGTGCACTGCAAGGTGGCCT--------------------------GGAAGGATCTGGAAGAGCAAGTT-CACAAGCAGTTGTGGCCAGAGCT
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540588  73 - 121039945 CCTGCTCTGTGCACTGCAAGGTGGCCT--------------------------GGAAGGATCCGGAAGAGCAAGTT-CACAAGCAGTTGGGGGCAGAGCT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181227381  73 - 181584905 CCTGCTCTGTGCACTGCAAGGTGGCCT--------------------------GGAAGGATCCGGAAGAGCAAGTT-CACAAGCAGGTGGGGGCGGAGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      222932  73 -   1764207 CCTGCTCTGTGCACTGCAAGGTGGCCT--------------------------GGAAGGATCCGGAAGAGCAAGTT-CACAAGCAGGTGGGGGCGGAGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240852  73 -  16742782 CCTGCTCTGTGCACTGCAAGGTGGCCT--------------------------GGAAGGATCCGGAAGAGTAAGTT-CACAAGCAGGTGGGGGCGGAGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546035  73 -  91010382 CCTGCTCTGTGCACTGCAAGGTGGCCT--------------------------GGAAGGATCCGGAAGAGTAAGTT-CACAAGCAGGTGGGGGCGGAGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137614  73 -    438239 CCTGCTCTGTGCACTGCAAGGTGGCCT--------------------------GGAAGGATCCGGAAGAGTAAGTT-CACAAGCAGGTGGGGGCGGGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173193  73 -    514179 CCTGCTCTGTGCACTGCAAGGTGGCCT--------------------------GGAAGGATCCGGAAGAGCAAGTT-CACAAGCAGGTGGGGGCAGAGCT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986782  72 +  16417988 CCTGCTGTGTGCACTGCATGG-GGTCT--------------------------GGAAGGATCCACAAGAGCAAATT-TGCCACCAGGTGGGGGCAGAGCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       67897  72 +    298490 CCTGCTGTGTGCACTGCATGG-GGTCT--------------------------GGAAGGATCCACAAGAGCAAATT-TGCCACCAGGTGGGGGCAGAGCT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1856717 100 -   2165740 CCTGCTCTGTGTCCTGGACAGGGGTCTTGTTGCCTCTATTTCCAAGAGGAAAATGAAGGGTCCAGAAAAGTAGGTTCCAGAGGCTGGTGGGAGCAGAGCA
i otoGar3.GL873745         I 221 C 0
e aotNan1.NW_018503740v1    25398312 703 -  25620257 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e rheMac8.chr6             179495741  65 - 180051392 I
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=18200.000000
s hg38.chr5_KI270793v1_alt     39213 2 +    126136 GG
s panTro5.chr5             181306617 2 - 181907262 GG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027068 2 - 183735486 GG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540661 2 - 121039945 GG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495806 2 - 180051392 GG
i rheMac8.chr6             I 65 C 0
s macFas5.chr6             181227454 2 - 181584905 GG
i macFas5.chr6             C 0 M 3998
s macNem1.NW_012012389v1      223005 2 -   1764207 GG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240925 2 -  16742782 GG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546108 2 -  91010382 GG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137687 2 -    438239 GG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173266 2 -    514179 GG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986854 2 +  16417988 GG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       67969 2 +    298490 GG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1856817 2 -   2165740 GG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25398312 703 -  25620257 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e gorGor5.CYUI01015805v1      114200 0 +    698298 C

a score=219496.000000
s hg38.chr5_KI270793v1_alt     39215 42 +    126136 AGCCGG-----GCACCTGGCATCCTGATCGGGTGAGTCT-------------GCTCAATG
s panTro5.chr5             181306619 42 - 181907262 AGCCGG-----GCACCTGGCATCCTGATCGGGTGAGTCT-------------GCTCAATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027070 42 - 183735486 AGCCGG-----GCACCTGGCATCCTGATCGGGTGAGTCT-------------GCTCAATG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540663 42 - 121039945 AGCCGG-----GCACTTGGCATCCTGATCAGGTGAGTCT-------------GCTCAATG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495808 42 - 180051392 AGCCGG-----GCGCCTGGCATCCTGATCAGGTGAGTCT-------------GCTCAACA
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223007 42 -   1764207 AGCCGG-----GCGCCTGGCATCCTGATCAGGTGAGTCT-------------GCTCAACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240927 42 -  16742782 AGCCGG-----GCGCCTGGCATCCTGATCAGGTGAGTCT-------------GCTCAACG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546110 42 -  91010382 AGCCGG-----GCACCTGGCATCCTGATCAGGTGAGTCT-------------GCTCAACG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137689 42 -    438239 AGCCGG-----GCGCCTGGCATCCTGATCAGGTGAGTCT-------------GCTCAACG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173268 42 -    514179 AGCCGG-----GTGCCTGGCACCCTGATCAGGTGAGTCT-------------ACTCAACG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15986856 42 +  16417988 AGCCGG-----GTGCACGGCATCCTGACCGGGAGAGTCT-------------GCTCAACA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       67971 42 +    298490 AGCCAG-----GTGCACAGCATCCTGACCGGGAGAGTCT-------------GCCCAACA
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1856819 58 -   2165740 AGCCAGAGATCATGCCTGCCCTCCC--TCATGCTGGGTTCACAGACACAGTGGCTCGATC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25398312 703 -  25620257 I
e calJac3.chr2             203820808 1001 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=137775.000000
s hg38.chr5_KI270793v1_alt     39257 26 +    126136 CTCCTGTC-------TCCAT----------------------GTTCAAGGCACTC
s panTro5.chr5             181306661 26 - 181907262 CTCCTGTC-------TCCAT----------------------GTTCAAGGCACTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027112 26 - 183735486 CTCCTGTC-------TCCAT----------------------GTTCAAGGCACTC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540705 26 - 121039945 CTCGTGTC-------TCCAC----------------------GTTCAAGGCACTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495850 26 - 180051392 CTCGTGTC-------TCCAT----------------------GTTTGAGACGCTC
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223049 26 -   1764207 CTCGTGTC-------TCTAT----------------------GTTTGAGACGCTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240969 26 -  16742782 CTCGTGTC-------TCCAT----------------------GTTTGAGACACTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546152 26 -  91010382 CTCGTGTC-------TCCAT----------------------GTTCGAGGCACTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137731 26 -    438239 CTTGTGTC-------TCCAT----------------------GTTTGAGGCACTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173310 26 -    514179 CTCATGTC-------TCCAT----------------------GTTCAAGGCACTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203821809 26 + 204313951 CTCGTGCT-------CCCGT----------------------GTTCAAGCCACTC
i calJac3.chr2             I 1001 C 0
s saiBol1.JH378155          15986898 26 +  16417988 CTCGTGCC-------TCCGT----------------------GTTCAAGCCACTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       68013 26 +    298490 CTCGTGCC-------TCTGT----------------------GTTCAAGCCACTT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1856877 55 -   2165740 TTCCTGCCAGGCAAGTCTGTACACTTTCCAGGGATGTCTTGGGTTCTAGGCCTTG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25398312 703 -  25620257 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M
e gorGor5.CYUI01015805v1      114200  0 +    698298 C

a score=864571.000000
s hg38.chr5_KI270793v1_alt     39283 115 +    126136 TTCCAGGAAGGTGGG-TACTGAGAG-----GGCCCCACCCCACC-CTGAGAAGCGGCAGCCTTGGGAGGC-CCAGGAAGTAAGAGCACCCATTAGCCCAGAATAGTGTGTATTGTTGCACAAT
s panTro5.chr5             181306687 115 - 181907262 TTCCAGGAAGGTGGG-TACTGAGAG-----GGCCCCACCCCACC-CTGAGAAGCGGCAGCCTTGGGAGGC-CCAGGAAGTAAGAGCACCCATTAGCTCAGAATAGTGTGTATTGTTGCACAAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027138 115 - 183735486 TTCCAGGAAGGTGGG-TACTGAGAG-----GGCCCCACCCCACC-CTGAGAAGCGGCAGCCTTGGGAGGC-CCAGGAAGTAAGAGCACCCATTAGCTCAGAATAGTGTGTATTGTTGCACAAT
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540731 115 - 121039945 TTCCAGGACGGTGGG-TACTGAGAG-----GGCCCCACCCAACC-CTGAGGAGCTGCAGCCTTGGGAGGC-CCAGGAAGTAAAAGCACCCATTAGCTCAGAATAGTGTGTATTGTTGCATAAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495876 115 - 180051392 TTCCAGGAAGGTGGG-TATGGAGAG-----GGCCCCACCCCACC-CTGAGAAGCCGCAGCCTTGGGAGGC-CCAGGAAGTAAGAGCACCCATTAGCTCAGAATAGTGTGTACTGTTGCATAAG
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223075 115 -   1764207 TTCCAGGAAGGTGGG-TACGGAGAG-----GGCCCCACCCCACC-CTGAGAAGCCGGAGCCTTGGGAGGC-CCAGGAAGTAAGAGCACCCATTAGCTCAGAATAGTGTGTACTGTTGCATAAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      240995 115 -  16742782 TTCCAGGAAGGTGGG-TACTGAGAG-----GGCCCCACCCCACC-CTGAGAAGCTGCAGCCTTGGGAGGC-CCAGGAAGTAAGAGCACCCATTAGCTCAGAATAGTGTGTACTGTTGCATAAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546178 115 -  91010382 TTCCAGGAAGGTAGG-TACTGAGAG-----GGCCCCACTCCACC-CTGAGAAGCTGCAGCCTTGGGAGGC-CCAGGAAGTAAGAGCACCCATTAGCTCAGAATAGTGTGTACTGTTGCATAAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137757 115 -    438239 TTCCAGGAAGGTGGG-TACTGAGAG-----GGCCCCACCCCACC-CTGAGAAGCTGCAGCCTTGGGAGGC-CCAGGAAGTAAGAGCACCCATTAGCTCAGAATAGTGTGTACTGTTGCATAAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173336 115 -    514179 TTCCAGGAAGGTGGG-TACTGAGAG-----GGCCCCACCTCACC-CTGAGAAGCTGCAGCCTTGGGAGGC-CCAGGAAGTAAGAGCACCCATTAGCTCAGAAGAGTGTGTACTGTTGCATAAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203821835 115 + 204313951 TCCCAGGAAGGTGGG-TAGTGCAAG-----GGCCACACCCCACC-CTGAGGAGCTGTAGCCTTGGGAGAC-CCAGGAAGTAGGAGCACCCATTAGCTCAGATTAGTACGTATTGTTGCATAAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15986924 115 +  16417988 TTCCAGGCAGGTGGG-TACTGCCAG-----GGCCCCACCCCACC-CGGAGGAGCTGCAGCCTTGGGAGAC-CCAGGAAGTAGGAGCACCCATTAGCTCAGATTAGTGCGTATTGTTGCATAAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       68039 115 +    298490 TTCCAGGAAGGTGGG-CACTGCAAG-----GGCCCCACGCCACC-CTGAGGAGCTGCAGCCTTGGGAGAC-CCGGGAAGTAGGAGCACCCATTAGCTCAGATGAGTGCGTATTGTTGCATAAC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25399015 117 -  25620257 TTCCAGAGAGGTGGG-TGCTGCGAG-----GGCCACACCCCACCTCTGAGGAGCTGCAGCCTTTGGAGACGCCAGGAAGTAGGAGCACCCATTAGCTCAGAGTAGTGTGGATTGTTGTACTAC
i aotNan1.NW_018503740v1   I 703 I 7
s otoGar3.GL873745           1856932 120 -   2165740 TTCCAAGAACACAGGACACAGAGTGGCGCTGGCCTAGCCCCACC-CAGAGGAGCTGTAGCCAGCGTCAGC-ACCCGGCATGAAGGCAGCGACAAG-TGACAGTGCCACACCTTTCTGCATGGC
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M
e gorGor5.CYUI01015805v1      114200   0 +    698298 C

a score=32292.000000
s hg38.chr5_KI270793v1_alt     39398 4 +    126136 GTGC
s panTro5.chr5             181306802 4 - 181907262 GTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027253 4 - 183735486 GTGC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120540846 4 - 121039945 GTGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495991 4 - 180051392 GTGC
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223190 4 -   1764207 GTGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241110 4 -  16742782 GTGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546293 4 -  91010382 GTGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137872 4 -    438239 GTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173451 4 -    514179 GTGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203821950 4 + 204313951 GTGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15987039 4 +  16417988 GTGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       68154 4 +    298490 GTGC
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1857052 4 -   2165740 GCGT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25399132 7 -  25620257 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M
e gorGor5.CYUI01015805v1      114200 0 +    698298 C

a score=40726.000000
s hg38.chr5_KI270793v1_alt     39402 5 +    126136 AATGT
s panTro5.chr5             181306806 5 - 181907262 AATGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027257 5 - 183735486 AATGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114200 5 +    698298 AATGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120540850 5 - 121039945 AATGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179495995 5 - 180051392 AATGT
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223194 5 -   1764207 AATGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241114 5 -  16742782 AATGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546297 5 -  91010382 AATGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137876 5 -    438239 AATGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173455 5 -    514179 AATGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203821954 5 + 204313951 AATGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15987043 5 +  16417988 AACGT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       68158 5 +    298490 AATGT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1857056 5 -   2165740 GCTGC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25399132 7 -  25620257 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=188380.000000
s hg38.chr5_KI270793v1_alt     39407 20 +    126136 CTAttagtaataatttacca
s panTro5.chr5             181306811 20 - 181907262 CTAttagtaataatttacca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027262 20 - 183735486 CTAttagtaataatttacca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114205 20 +    698298 CTAttagtaataatttacca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120540855 20 - 121039945 CTAttagtaataatttacca
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496000 20 - 180051392 CTAttaataataatttacca
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223199 20 -   1764207 CTAttaataataatttacca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241119 20 -  16742782 CTAttaataataatttacca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546302 20 -  91010382 CTAttaataataatttacca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137881 20 -    438239 CTAttaataataatttacca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173460 20 -    514179 CTAttaacaataatttacca
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203821959 20 + 204313951 CTAttagtaataatttacca
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15987048 20 +  16417988 CTAttagtaataatttacca
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       68163 20 +    298490 CTATTAGTAATCATTTACCA
i cebCap1.NW_016108158v1   C 0 I 43
s aotNan1.NW_018503740v1    25399139 20 -  25620257 CTATTAGTAATATTTTACCA
i aotNan1.NW_018503740v1   I 7 C 0
s otoGar3.GL873745           1857061 20 -   2165740 CTGTTAGCAAGTATGTGTTA
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=100619.000000
s hg38.chr5_KI270793v1_alt     39427 12 +    126136 atattggctcat
s panTro5.chr5             181306831 12 - 181907262 atattggctcat
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027282 12 - 183735486 atattggctcat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114225 12 +    698298 atattgtctcac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120540875 12 - 121039945 atattggctcat
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496020 12 - 180051392 atattggctcat
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223219 12 -   1764207 atattggctcat
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241139 12 -  16742782 atattggctcat
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546322 12 -  91010382 atattggctcat
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137901 12 -    438239 atattggctcat
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173480 12 -    514179 atattggctcgt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203821979 12 + 204313951 atattggctcat
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15987068 12 +  16417988 atattggctcat
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25399159 12 -  25620257 ATATTGGCTCAT
i aotNan1.NW_018503740v1   C 0 I 77
s otoGar3.GL873745           1857081 12 -   2165740 GTGCCGACTCAA
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       68183 43 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=4750.000000
s hg38.chr5_KI270793v1_alt     39439 1 +    126136 c
s panTro5.chr5             181306843 1 - 181907262 c
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027294 1 - 183735486 c
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114237 1 +    698298 c
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120540887 1 - 121039945 c
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496032 1 - 180051392 c
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223231 1 -   1764207 c
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241151 1 -  16742782 c
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546334 1 -  91010382 c
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      137913 1 -    438239 c
i manLeu1.NW_012110441v1   C 0 T 1612
s colAng1.NW_012118799v1      173492 1 -    514179 c
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203821991 1 + 204313951 t
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15987080 1 +  16417988 t
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1857093 1 -   2165740 T
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25399171 77 -  25620257 I
e cebCap1.NW_016108158v1       68183 43 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=745.000000
s hg38.chr5_KI270793v1_alt     39440 1 +    126136 a
s panTro5.chr5             181306844 1 - 181907262 a
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027295 1 - 183735486 a
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114238 1 +    698298 a
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120540888 1 - 121039945 a
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203821992 1 + 204313951 g
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15987081 1 +  16417988 g
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1857094 1 -   2165740 G
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25399171 77 -  25620257 I
e cebCap1.NW_016108158v1       68183 43 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      137914 1612 -    438239 T
e chlSab2.chr4              90546335 0 -  91010382 C
e cerAty1.NW_012009470v1      241152 0 -  16742782 C
e colAng1.NW_012118799v1      173493 0 -    514179 C
e macNem1.NW_012012389v1      223232 0 -   1764207 C
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179496033 0 - 180051392 C

a score=113013.000000
s hg38.chr5_KI270793v1_alt     39441 22 +    126136 --cgtgtaaccagcattccatgca
s panTro5.chr5             181306845 22 - 181907262 --cgtgtaaccagcattccacgca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027296 22 - 183735486 --cgtgtaaccagcattccacgca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114239 22 +    698298 --cgtgtaaccagcattccacgca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120540889 22 - 121039945 --cgtgtaaccagcattccatgca
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496033 22 - 180051392 --catctaaccagcattccacaca
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223232 22 -   1764207 --catctaaccagtattccacaca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241152 22 -  16742782 --cgtctaaccagcattccacaca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546335 22 -  91010382 --cgtctaaccagcattccacaca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      136302 22 -    438239 --cgtctaaccagcattccacaca
i manLeu1.NW_012110441v1   T 1612 C 0
s colAng1.NW_012118799v1      173493 22 -    514179 --tgtctaaccagcattccacaca
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203821993 22 + 204313951 --catgtaaccactgttccacaca
i calJac3.chr2             C 0 I 308
s saiBol1.JH378155          15987082 20 +  16417988 --catgtaaccatcattccaca--
i saiBol1.JH378155         C 0 I 1
s otoGar3.GL873745           1857095 12 -   2165740 CTCGTGAGTGca------------
i otoGar3.GL873745         C 0 I 2
e aotNan1.NW_018503740v1    25399171 77 -  25620257 I
e cebCap1.NW_016108158v1       68183 43 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=6006.000000
s hg38.chr5_KI270793v1_alt     39463 1 +    126136 a
s panTro5.chr5             181306867 1 - 181907262 a
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027318 1 - 183735486 a
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114261 1 +    698298 a
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120540911 1 - 121039945 a
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496055 1 - 180051392 a
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223254 1 -   1764207 a
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241174 1 -  16742782 a
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546357 1 -  91010382 a
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      136324 1 -    438239 a
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173515 1 -    514179 a
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1857109 1 -   2165740 a
i otoGar3.GL873745         I 2 C 0
e aotNan1.NW_018503740v1    25399171 77 -  25620257 I
e cebCap1.NW_016108158v1       68183 43 +    298490 I
e saiBol1.JH378155          15987102 1 +  16417988 I
e calJac3.chr2             203822015 308 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=65631.000000
s hg38.chr5_KI270793v1_alt     39464 10 +    126136 acgcaaggtt
s panTro5.chr5             181306868 10 - 181907262 acgcaaggtt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027319 10 - 183735486 acgcaaggtt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114262 10 +    698298 acgcaaggtt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120540912 10 - 121039945 atgcaaggtt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496056 10 - 180051392 acgtaagatt
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223255 10 -   1764207 acgtaagatt
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241175 10 -  16742782 acgtaagatt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546358 10 -  91010382 atgtaagatt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      136325 10 -    438239 atgtaagatt
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173516 10 -    514179 acgtaagatt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203822323 10 + 204313951 acataagatt
i calJac3.chr2             I 308 I 3
s saiBol1.JH378155          15987103 10 +  16417988 acacaagatt
i saiBol1.JH378155         I 1 I 3
s otoGar3.GL873745           1857110 10 -   2165740 atgcaagatt
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25399171 77 -  25620257 I
e cebCap1.NW_016108158v1       68183 43 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=345571.000000
s hg38.chr5_KI270793v1_alt     39474 53 +    126136 taata--------aggga---gggaggggtacatgggaacctctgc-cttcctgctcaccataac-
s panTro5.chr5             181306878 53 - 181907262 taata--------aggga---gggaggggtacatgggaacctctgc-cttcctgctcaccataac-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027329 53 - 183735486 taata--------aggga---gggaggggtacatgggaacctctgc-cttcctgctcaccataac-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114272 53 +    698298 taata--------aggga---gggaggggtacatgggaacctctgc-cttcctgctcaccataac-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120540922 53 - 121039945 taata--------atgga---gggaggggtacatgggagcctctgc-cttcctgctcaccataac-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496066 61 - 180051392 taataagggagggaggga---gggaggggtacatgggaacctctgt-cttcctgctcaccataac-
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223265 61 -   1764207 taataagggagggaggga---gggaggggtacatgggaacctctgt-cttcctgctcaccataac-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241185 61 -  16742782 taataagggagggaggga---gggaggggtacatgggaacctctgt-cttcctgctcaccgtaac-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546368 61 -  91010382 taataagggagggaggga---gggaggggtacatgggaacctctgt-cttcctgctcaccataac-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      136335 61 -    438239 taataagggagggaggga---gggaggggtacatgggaacctctgt-cttcctgctcaccataac-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173526 49 -    514179 taata------------a---gggagaggtacatgggaacctctgt-cttcctgctcaccataac-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203822336 54 + 204313951 taata--------aggga---gggagggctacatgagcacctctgcacttcctgccctccacaaa-
i calJac3.chr2             I 3 C 0
s saiBol1.JH378155          15987116 53 +  16417988 taatg--------aggga---gggagggccgcccacacacctctgcacttcctgccc-ccacaaa-
i saiBol1.JH378155         I 3 C 0
s cebCap1.NW_016108158v1       68226 54 +    298490 taata--------aggga---gggagggctacacgagcacctctgcacttcctgccccccacaaa-
i cebCap1.NW_016108158v1   I 43 C 0
s otoGar3.GL873745           1857120 58 -   2165740 ttata------gcaggcacatgggcggggtg--tgggaacctcagtgcttcctgcttggtgcagaa
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25399171 77 -  25620257 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=795518.000000
s hg38.chr5_KI270793v1_alt     39527  87 +    126136 cctaagactgctct--aaaaataaag-tctactaa-tttttctaaaaaC-ACCTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
s panTro5.chr5             181306931  87 - 181907262 cctaagactgctct--aaaaataaag-tctactaa-tttttctaaaaaC-ACCTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027382  87 - 183735486 cctaagactgctct--aaaaataaag-tctactaa-tttttctaaaaaC-ACCTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114325  87 +    698298 cctaagactgctct--aaaaataaag-tctactaa-tttttctaaaaaC-ACTTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120540975  87 - 121039945 cctaagactgctct--aaaaataaag-tctactaa-tttttctaaaaaC-ACCTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496127  87 - 180051392 cctaagactgttcc--aaaaataaag-tctactaa-tttttctaaaaaC-ACCTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i rheMac8.chr6             C 0 I 9
s macNem1.NW_012012389v1      223326  87 -   1764207 cctaagactgctcc--aaaaataaag-tctactaa-tttttctaaaaaC-ACCTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i macNem1.NW_012012389v1   C 0 I 9
s cerAty1.NW_012009470v1      241246  87 -  16742782 cctaagactgctct--aaaaataaag-tctactaa-tttttctaaaaaC-ACTTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i cerAty1.NW_012009470v1   C 0 I 9
s chlSab2.chr4              90546429  87 -  91010382 cctaagactgctct--aaaaataaag-tctactaa-tttttctaaaaaC-ACCTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i chlSab2.chr4             C 0 I 9
s manLeu1.NW_012110441v1      136396  87 -    438239 cctaagactgctct--aaaaataaag-tctactaa-tttttctaaaaaC-ACCTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i manLeu1.NW_012110441v1   C 0 I 1621
s colAng1.NW_012118799v1      173575  87 -    514179 cctaagactgctct--aaaaataaag-tctactga-tttttctaaaaaT-ACCTATGGAGTGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i colAng1.NW_012118799v1   C 0 I 9
s calJac3.chr2             203822390  87 + 204313951 tataagactgctct--aaaaataaag-tctactaa-tttttgtaaaaaC-ACCTATGGAGGGATATCATTGCCTTGTGG----------------------------GTCTC---------AAGGGTGA
i calJac3.chr2             C 0 I 9
s saiBol1.JH378155          15987169  86 +  16417988 cctaagactgctct---aaaataaag-tctactgg-tttttgtaaaaaC-ATCTAGGGAGGGATGTCATTGCCTTGTGA----------------------------GTCTC---------AGGGGTGA
i saiBol1.JH378155         C 0 I 9
s cebCap1.NW_016108158v1       68280  87 +    298490 cctaagactgctct--aaaaataaag-tctactaa-tttttataaaaaC-ACCTTTGGAGGGATGTCATTGCCTTGTGG----------------------------GTCTC---------AGGGGTGA
i cebCap1.NW_016108158v1   C 0 I 9
s aotNan1.NW_018503740v1    25399248  89 -  25620257 CCTAAGACTGCTCT--AAAAATAAAGACCTACTGATTTTTTGTAAAAACAACCTGTGGAGGGATGTCA-TGCCTTGTGG----------------------------GTCTC---------AGGGGCGA
i aotNan1.NW_018503740v1   I 77 I 9
s otoGar3.GL873745           1857178 122 -   2165740 tcta--actgctctaaaaaaataaag-gctattaa-tctttt--aaaaT-ACCAAAGGAATGACTTAATTGTCTTGTGGAAGCACAAGGAGGGAGGGTGAACATCCTGACCCGGTCAGCAAGGGGATGA
i otoGar3.GL873745         C 0 I 6
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=2412995.000000
s hg38.chr5_KI270793v1_alt     39614 288 +    126136  
s panTro5.chr5             181307018 288 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027469 288 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114412 287 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120541062 288 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496223 288 - 180051392  
i rheMac8.chr6             I 9 C 0
s macNem1.NW_012012389v1      223422 288 -   1764207  
i macNem1.NW_012012389v1   I 9 C 0
s cerAty1.NW_012009470v1      241342 288 -  16742782  
i cerAty1.NW_012009470v1   I 9 C 0
s chlSab2.chr4              90546525 288 -  91010382  
i chlSab2.chr4             I 9 C 0
s manLeu1.NW_012110441v1      138104 288 -    438239  
i manLeu1.NW_012110441v1   I 1621 C 0
s colAng1.NW_012118799v1      173671 289 -    514179  
i colAng1.NW_012118799v1   I 9 C 0
s calJac3.chr2             203822486 348 + 204313951  
i calJac3.chr2             I 9 I 3
s saiBol1.JH378155          15987264 289 +  16417988  
i saiBol1.JH378155         I 9 C 0
s cebCap1.NW_016108158v1       68376 289 +    298490  
i cebCap1.NW_016108158v1   I 9 I 3
s aotNan1.NW_018503740v1    25399346 286 -  25620257  
i aotNan1.NW_018503740v1   I 9 C 0
s otoGar3.GL873745           1857306 528 -   2165740  
i otoGar3.GL873745         I 6 C 0
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=70288.000000
s hg38.chr5_KI270793v1_alt     39902 20 +    126136 GGCAAAGAGACGCTGTCAAA-
s panTro5.chr5             181307306 20 - 181907262 GGCAAAGAGACGCTGTCAAA-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027757 20 - 183735486 GGCAAAGAGACGCTGTCAAA-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114699 20 +    698298 GGCAAAGAGACGCTGTCAAA-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120541350 20 - 121039945 GGCAAAGAGACGCTGTCAAA-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496511 20 - 180051392 GACAAAAAGATGCTGTCGAG-
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223710 20 -   1764207 GACAAAAAGATGCTGTCGAG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241630 20 -  16742782 GACAAAAAGATGCTGTCGAG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546813 20 -  91010382 GACAAAAAGATGCTGTCGAG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      138392 20 -    438239 GACAAAAAGATGCTGTCGAG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173960 20 -    514179 GACTAAAAGATGCTGTCGAG-
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15987553  3 +  16417988 ------------TTG------
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25399632  2 -  25620257 ------------TT-------
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1857834 21 -   2165740 GGCCAAAAGGTGCTGCTGAAG
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       68665  3 +    298490 I
e calJac3.chr2             203822834  3 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=1984290.000000
s hg38.chr5_KI270793v1_alt     39922 245 +    126136 TGTGCAGCCCACAGTCAGCTCAGCATTTCTGGGGCTCTG-TTGCCCCTGCAGAGCCAAAGCGTTCAGCAGCTTGTGGGGCGGGCACAGAGAGGGTGGTTGGACCAGCTGGAGCTGCAGAGAAGGGACAGGCGCCCACGGAGCTGCTACAGCTGGACATCAGGATGGACGCAGAAGGTGAGGGCCACCAGGCTCAGGTGTTGATGGAGAAATGA-TTCTAAACAGCAAGTCAGAGCTGCCCGCACCCT
s panTro5.chr5             181307326 245 - 181907262 TGTGCAGCTCACAGTCAGCTCAGCATTTCTGGGGCTCTG-TTGCCCCTGCAGAGCCAAAGCGTTCAGCAGCTTGTGGGGCGGGCACAGAGAGGGTGGTTGGGCCAGCTGGAGCTGCAGAGAAGGGACAGGCACCCACGGAGCTGCTACAGCTGGACATCAGGATGGACGCAGAAGGTGAGGGCCACCAGGCTCAGGTGTTGATGGAGAAATGA-TTCTAAACAGCAAGTCAGAGCTGCCCGCACCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183027777 245 - 183735486 TGTGCAGCTCACAGTCAGCTCAGCATTTCTGGGGCTCTG-TTGCCCCTGCAGAGCCAAAGCGTTCAGCAGCTTGTGGGGCGGGCACAGAGAGGGTGGTTGGGCCAGCTGGAGCTGCAGAGAAGGGACAGGCACCCACGGAGCTGCTACAGCTGGACATCAGGATGGACGCAGAAGGTGAGGGCCACCAGGCTCAGGTGTTGATGGAGAAATGA-TTCTAAACAGCAAGTCAGAGCTGCCCGCACCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114719 246 +    698298 TGTGCAGCCCACAGTCAGCTCAGCATTTCTGGGGCTCTGTTTGCCCCTGCAGAGCCAAAGCATTCAGCAGCTTGTGGGGCAGGCACAGAGAGGGTGGTTGGGCCAGCTGGAGCTGCAGAGAAGGGACAGGCGCCCACGGAGCTGCTGCAGCTGGACATCAGGATGGACGCAGAAGGTGAGGGCCACCAGGCTCCGGTGTTGATGGAGAAATGA-TTCTAAACAGCAAGTCAGAGCTGcccacaccct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120541370 246 - 121039945 TGTGCAGCCCACAGTCAGCTCAGGATTTACGGGGCTCTGTTTGCCCCTGCAGAGCCAAAGGGTTCAGCAGCTTGTGGGGCAGGCACAGAGAGGGTGCTTGGGCCAGCTGGAGCTGCAGAGAAGGAACAGGCGCCCACGCAGCTGCTGCAACTGGACATCAGGATGGACACAGAAGGTGAGGGCCACCAGGCTCAGGTGTTGATGGAGAAATGA-TTCTAAACAGCAAGTCAGAGCTGCCCGCACCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496531 232 - 180051392 TGTGCAGCCCACAGTCAGCTCAGCATTTATGAGGCTCTGCTTGCCCCTGCAGAGCCAAAGGGCTGAGCACCTTGTAGAGCGGGCACAGAGAGGGCACTTGGGCCAGTGGGAGCTACAGAGAAGGGGCAGGCGCCCACTGAGCTGCTGCAGCTGGACATCAGGATGGACGCAGAAGGTGAG--------------GGTGTCAATGGAGAAATGA-TTCTAAACAGTGAGTCAGAGCTGCCCGCACCCT
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223730 232 -   1764207 TGTGCAGCCCACAGTCAGCTCAGCATTTATGAGGCTCTGCTTGCCCCTGCAGAGCCAAAGGGCTGAGCACCTTGTAGAGTGGGCACAGAGAGGGCACTTGGGCCAGTGGGAGCTACAGAGAAGGGGCAGGCGCCCACTGAGCTGCTGCAGCTGGACATCAGGATGGACGCAGAAGGTGAG--------------GGTGTCAATGGAGAAATGA-TTCTAAACAGTGAGTCAGAGCTGCCCGCACCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241650 232 -  16742782 TGTGCAGCCCACAGTCAGCTCAGCATTTATGAGGCTCTGCTTGCCCCTGCAGAGCCAAAGGGCTGAGCACCTTGTAGAGCAGGCACAGAGAGGGCACTTGGGCCAGTGGGAGCTACAGAGAAGGGGCAGGCGCCCACTGAGCTGCTGCAGCTGGACATCAAGATGGACGCAGAAGGTGAG--------------GGTGTCAATGGAGAAATGA-TTCTAAACAGTGAGTCAGAGCTGCCCGCACCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90546833 246 -  91010382 TGTGCAGCCCACAGTCAGCTCAGCATTTATGAGGCTCTGCTTGCCCCTGCAGAGCCAAAGGGCTGAGCACCTCGTAGGGCGGGCACAGAGAGGGCACTTGGGCCAGTGGGAGCTACAGAGAAGGGGCAGGCGCCCACTGAGCTGCTGCAGCTGGACATCAGGATGGACGCAGAAGGTGAGGGCCACCAGGCTCAGGTGTCAATGGAGAAATGA-TTCTAAACAGCGAGTCAGAGCTGcccgcaccct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      138412 232 -    438239 TGTGCAGCCCACAGTCAGCTCAGCATTTATGAGGCTCTGCTTGCCCCTGCAGAGCCAAAGGGCTGAGCACCTTGTAGAGCGGGCACAGAGAGGGCACTTGGGCCAGTGGGAGCTACAGAGAAGGGGCAGGCGCCCACTGAGCTGCTGCAGCTGGACATCAGGATGGACGCAGAAGGTGAG--------------GGTGTCAATGGAGAAATGA-TTCTAAACAGCGAGTCAGAGCTGCCCGCACCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      173980 240 -    514179 TGTGCAGCCCACAGTCAGCTCAGCATTTATGGGGCTCTGCTTGTCCCTGCAGAGCCAAAGGGCTCAGCACCTTGTAGGGCGGGCACAGAGAGGGCGCTTGGGCCAGTGGGAGCTGCAGAGAAGGGGCAGGTGCCCACGGAGCTGCTGCAGC------TCAGGATGGATGCAGAAGGTGAGGGCCACCAGGCTCAGGTGTCAATGGAGAAATGA-TTCTAAACAGCAAGTCAGAGCTGCCCGCACCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203822837 242 + 204313951 TGTGCAGCCCACAGTCAGCTCAGCATTTATGGGGCTCTGATTGCCCCTGCAGAGCCAGAGGGTTCAACACCTCATGGGGCGGGCACAGGGAGGGCACTCAGGCCAGCGGGAGCTGCAGAGAAGGGGCAGGCGCCCACTGAGCT---GCC-CTGGACATCAGGATGGACACAGAGGGTGAGGGCCACCAGGCTCGGGTGCCGATGGAGAAATGA-TTCTAAACAGCGAGTCAGAGCTGCCCGCACCAT
i calJac3.chr2             I 3 C 0
s saiBol1.JH378155          15987556 244 +  16417988 -GTACAGCCCACAGTCAGCTCAGCATTTATGGGGCTCTGCTTGCCCCTGCAGAGCCAGAGGGTTCAACACCTCATGGGGCAGGCACAGGAAGGGCACTCAGGCCAGTGGCAGCTGCAGAGAAGAGGCGGGCGTCCACTGAGCTGCCGCC-CTGGACATCAGGATGGCCACAGAAGGTGAGGGCCACCAGGCCCAGGTGTCGATGGAGAAATGA-TTCTACACAGCGAGTCAGAGCTGCCCACACCAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       68668 245 +    298490 TGTGCAGCCCACAGTCAGCTCAGCATTTATGGGGCTCTGCTTGCCCCTGCAGAGCCAGAGCGTTCAACACCTCATGGGGCAGGCACAGGGACGGCACTCAGGCCAGCAGGAGCTGCAGAGAAGAGGCAGGCTCCCACTGAGCTGCCGCC-CTGGACATCAGGATGGACACAGAAGGTGAGGGCCACCAGGCTCGAGTGTCGATGGACAAATGA-TTCTAAACAGCGAGTCAGAGCTGCCCGCACCAT
i cebCap1.NW_016108158v1   I 3 I 16
s aotNan1.NW_018503740v1    25399634 245 -  25620257 TGTGCAGCCCACAGTCAGCTCAGCATTTATGGGGCTCTGCCTGCCCCTGCAGAGCCAGAGGGTTCAACACCTCATGGGGTGGGCACAGGGAGGGCACTCAGGCCAGCGGGAGCTGCAGAGAAGGGGCAGGCGCCCACTGAGCTGCCGCC-CTGGACATCAGGATGGACACAGAAGGTGAGGGCCACCAGGCTCGGGTGTCGATGGAGAAATGA-TTCTAAACAGCGCGTCAGAGCTGCCCGCACCGT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1857855 181 -   2165740 TGTTTAGCCCTCAGTCGTGTGGGCACTTCTGGGAACCC-----------------------------------------CAATCACCAGGAGAGGA---GGACCCATGGG-------GAGATAGGGGGAGAAACTGATAGGCTTAAAAAACTGAAAACCAGGA-GGGTGTGAAGGGTGAG-CACAGAAGGCTTTGG-------AGAGAAATGGTTTCTATACAGTG-GACAGGGC-ACCTGCA----
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=77932.000000
s hg38.chr5_KI270793v1_alt     40167 17 +    126136 CACACGCTGCCCTCCAC
s panTro5.chr5             181307571 17 - 181907262 CACACGCTGCCCTCCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028022 17 - 183735486 CACACGCTGCCCTCCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114965 17 +    698298 cacacgctgccctccac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120541616 17 - 121039945 CACACGCTGCCCCCTAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496763 17 - 180051392 CACACGCTGCCCTCCCC
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223962 17 -   1764207 CACACGCTGCCCTCCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241882 17 -  16742782 CACACGCTGCCCTCCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90547079 17 -  91010382 cacacgctgccctcccc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      138644 17 -    438239 CACACGCTGCCCTCCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      174220 17 -    514179 CACACGCTGCCCTCCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203823079  8 + 204313951 CGTG---------CCAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15987800 17 +  16417988 CGTGCCCCCTCCCCCAT
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25399879  8 -  25620257 CATG---------CCAC
i aotNan1.NW_018503740v1   C 0 I 8
e otoGar3.GL873745           1858036  0 -   2165740 C
e cebCap1.NW_016108158v1       68913 16 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=1347462.000000
s hg38.chr5_KI270793v1_alt     40184 189 +    126136 CCCCCATTCCCCCACTGCCACCTTGCAGCAGAAGCCCAGGGGGTGGTGCAAGGTCAGCCAGGAAAGGGCCCTGATCCCAGGGGCTCAGCGGAAAGTGCAGTGGACTGTGGCTCAGTGGGCTCAACCCCTGCTAACTGCTCCCTCAAAT----------GGAAGATGCGTTGTTTTAATTTTCTTTGATTTTAACAAAAG--
s panTro5.chr5             181307588 189 - 181907262 CCCCCATTCCCCCACTGCCACCTTGCAGCAGAAGCCCAGGGGGTGGTGCAAGGTCAGCCAGGAAAGGGCCCTGATCCCAGGGGCTCAGCGGAAAGTGCAGTGGACTGTGGCTCAGTGGGCTCAAACCCTGCTAACCGCTCCCTCAAAT----------GGAAGATGGGTTGTTTTAATTTTCTTTGATTTTAACAAAAG--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028039 189 - 183735486 CCCCTATTCCCCCACTGCCACCTTGCAGCAGAAGCCCAGGGGGTGGTGCAAGGTCAGCCAGGAAAGGGCCCTGATCCCAGGGGCTCAGCGGAAAGTGCAGTGGACTGTGGCTCAGTGGGCTCAACCCCTGCTAACTGCTCCCTCAAAT----------GGAAGATGCGTTGTTTTAATTTTCTTTGATTTTAACAAAAG--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      114982 189 +    698298 cccccattcccccacTGCCACCTTGCAGCAGAAGCCCAGGGGGTGGTGCAAGGTCAGCCAGGAAAGGGCCCTGATCCCAGGCGCTCAGCGGAAAGTGCAGTGGACTGTGGCTCAGTGGGCTCAACCCCTGCTAACTGCTCCCTCAAAT----------GGAAGATGCGTTGTTTTAATTTTCTTTGATTTTAACAAAAG--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120541633 177 - 121039945 CCCC------------ACCACCTCGCAGCAGAAGCCCAGGGGGTGGTGGAAGGTCAGCCAGGAAAGGGCCCTGATCCCAGGGGTTCAGCGGAAAGTGCAGTGGACTGTGGCTCAGTGGGCTCAACCCCTGCTAACTGCTCCCTCAAAT----------GGAAGATGCGttgttttaattttctttgattttaacaaaag--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496780 176 - 180051392 ACCC----------CCACCACCTTGCAGCAGAAGCCCAGGGGGTGGTGCAAGGTTAGCCAGGAAAGGGCTCTGACCCCAGGGGCTCAGCGGAAAGTGCAGTGAGCCGTGCCTCAGT-GGCTCAACCCCTGCTAACTGCTCCCTCAAAT----------GGAAGATGCG--GTTTTAATtttctttgattttaacaaaag--
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      223979 176 -   1764207 ACCC----------CCACCACCTTGCAGCAGAAGCCCAGGGGGTGGTGCAAGGTTAGCCAGGAAAGGGCCCTGACCCCAGGGGCTCAGCGGAAAGTGCAGTGAGCCGTGCCTCAGT-GGCTCAACCCCTGCTAACTGCTCCCTCAAAT----------GGAAGATGCG--GTTTTAATtttctttgattttaacaaaag--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      241899 176 -  16742782 ACCC----------CCACCACCTTGCAGCAGAAGCCCAGGGGGTGGTGCAAGATTAGCCAGGAAAGGGCCCTGACCCCAGGGGCTCAGCGGAAAGTGCAGTGAACCGTGCCTCAGT-GGCTCAACCCCTGCTAACTGCTCCCTCAAAT----------GGAAGATGCG--GTTTTAATtttctttggttttaacaaaag--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90547096 176 -  91010382 gccc----------ccgccaccTTGCAGCAGAAGCCCAGGGGGTGGTGCAAGGTTAGCCAGGAAGGGGCCCTGACCCCAGGGGCTAAGTGGAAAGTGCAGTGAACCGTGCCTCAGT-GGCTCAACCCCTGCTAACTGCTCCCTCAAAT----------GGAAGATGTG--GTTTTAATtttctttgattttaacaaaag--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      138661 186 -    438239 ACCC----------CCACCACCTTGCAGCAGAAGCCCAGGGGGTGGTGCAAGATTAGCCAGGAAAGGGCCCTGACCCCAGGGGCTCAGCGGAAAGTGCAGTGAACCGTGCCTCAGT-GGCTCAACCCCTGCTAACTGCTCCCTCAAATGCAAGATGCGGGAAGATGCG--GTTTTAATtttctttgattttaacaaaag--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      174237 176 -    514179 ACCC----------CCGCCACCTTGCAGCAGAAGCCCAGGGGGTGGTGCAAGGTTAGCCAGGAAAGGCCCCAGACCCCAGGGGCTCAGCGGAAAGTGCAGTGAACTGTGCCTCAGT-GGCTCAACCCCTGCTAACTGCTCCCTCAAAT----------GGAAGATGCA--GTTTTAATtttctttgattttaacaaaag--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203823087 160 + 204313951 --CC----------CACCCGCTTCGCAGCAGACACCCA-GGGGTGGTGCAAGCTCAGTTAGGGAAGAG--CTGACCC--AGGGCTCA-CCGAAAGTGCAG-AAACTGTGGCG--ATGGGCTCAA-CCCTGCT-ACTGCTCCCTCAA------------TGGGGATGCATTGTTCAA---TCCCTTGA-TTGAACAAAGG--
i calJac3.chr2             C 0 M 838
s saiBol1.JH378155          15987817 175 +  16417988 --CC----------CACCCACTTTGCAGCAGACACCCA-GGAGTGGTGCAAGGTCAGTCAGGGAAGGGC-CTGACCCCAGGGGCTCAGCAGAAAGTGCAGTGGACTGTGGCGGAGTGGGCTCAACCCCTGCTAACTGCTCCCTCAAAT----------GGGAGATGCATTGTTTTAATTTTCTTTGATTTTAACAAAAG--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       68929 175 +    298490 ACCC----------CACCTGCTTTGCAGCAGACGCCCA-GGCGTGATGCAAGGTCAGTCAGGGAAGGGC-CTGACCCCAGGGGCTCAGCAGAAAGTGCAGTGGACTGTGGCTGAGTGGGCTCAACCCCTGCTAACCGCTCCCTCAA------------ATGGGATGCATTGTTTTTATTTTCTTTGATTTTAACAAAAG--
i cebCap1.NW_016108158v1   I 16 C 0
s aotNan1.NW_018503740v1    25399895 176 -  25620257 ACCC----------TACCCGCCTCGCAGCAGACACCCA-GGGGTGGTGCAAGCTCAGTCAGGGAAGGGC-CTGACCCCAGGGG-TCAGCGGAAAGTGCAGTGGACTGTGGCTGAGTGGGCTGAACCCCTGCTAACTGCTCCCTCAAAT----------GGGAGATACATTGTTTTAATTTTCTTTGATTTTAACAAAAG--
i aotNan1.NW_018503740v1   I 8 C 0
s otoGar3.GL873745           1858036 137 -   2165740 --------------------------------------------GGCATAGGTCCCACCTGGCAGAGGTCTTGGCCCT----------TAGAAATCACAGTAGGCCATGGCTGTGTGGGCTCAGCCTCTGCCAGCTGTTCTCCCAAAT----------GGGAGATATGTCATTTTCATTTTCTTTGATTCTAACAAAATGG
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=1498834.000000
s hg38.chr5_KI270793v1_alt     40373 226 +    126136 GC-AATGCATTTGTGTGGCTTGATAATCAAACAGTAAAAAGTTATGCAGTCAGCAGCC---TAACTCCCACTGCC-ACCTCGTCCCCT---GCCAGCTCTCACGCCCTCCGGACTCTGTGCCTGTTGCTTTCATGTTCGGGCTCCCAGAATT-ACTTTTGCAAATGCAAGTAAATGCCTG--------CGCAACTTCATCACCCTCCTCCCATCTTAAACAAAAGGTTTCATTCAACAAACTA---
s panTro5.chr5             181307777 226 - 181907262 GC-AATGCATTTGTGTGGCTTGATAATCAAACAGTAAAAAGTTATGCAGTCAGCAGCC---TAACTCCCACTGCC-ACCTCGTCCCCT---GCCAGCTCTCACGCCCTCCGGACTCTGTGCCTGTTGCTTTCATGTTCGGGCTCCCAGAATT-ACTTTTGCAAATGCAAGTAAATGCCTG--------CGCAACTTCATCACCCTCCTCCCATCTTAAACAAAAGGTTTCATTCAACAAACTA---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028228 226 - 183735486 GC-AATGCATTTGTGTGGCTTGATAATCAAACAGTAAAAAGTTATGCAGTCAGCAGCC---TAACTCCCACTGCC-ACCTCGTCCCCT---GCCAGCTCTCACGCCCTCCGGACTCTGTGCCTGTTGCTTTCATGTTCGGGCTCCCAGAATT-ACTTTTGCAAATGCAAGTAAATGCCTG--------CGCAACTTCATCACCCTCCTCCCATCTTAAACAAAAGGTTTCATTCAACAAACTA---
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115171 226 +    698298 GC-AATGCATTTGTGTGGCTTGATAATCAAACAGTAAAAAGTTATGCAGTCAGCAGCC---TAACTCCCACTGCC-ACCTCGTCCCCT---GCCAGCTCTCACGCCCTCCGGACTCTGTGCCTGTTGCTTTCATGTTCAGGCTCCCAGAATT-ACTTTTGCAAATGCAAGTAAATGCCTG--------CGCAACTTCATCACCCTCCTTCTATCTTAAACAAAAGGTTTCATTCAACAAACTA---
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120541810 225 - 121039945 gcaaatgcatttgtgtggcttgataatcaaacagtaaaaagttatgcagtcagcagcc---taactcccactgcc-gccccgtcccct---gccagctctcacgccctccggactc--tgcctgttgctttcatgttcagcctcccagaatt-acttttgcaaatgcaagtaaatgcctg--------tgcgagttcatcaccctcctcccatcttaaacaaaaggtttcattcaacaaacta---
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179496956 226 - 180051392 gc-aatgcatttgtgtgatttgataatcaaacagtaaaaagttatgcagtcagcagcc---taactcccactgcc-gccccatcccct---gacagctctcacaccttctggactctgtgcctgttgctttcatgttcaggcttccagaatt-acttttgcaaatgcaagtgaacgcttg--------tgcaagttcatcaccctcctcccatcttacacaaaagatttcatacaacaaacta---
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      224155 226 -   1764207 gc-aatgcatttgtgtgatttgataatcaaacagtaaaaagttatgcagtcagcagcc---taactcccactgcc-gccccatcccct---gacagctctcacaccttctggactctgtgcctgttgctttcatgttcaggcttccagaatt-acttttgcaaatgcaagtgaacgcttg--------tgcaagttcatcaccctcctcccatcttacacaaaagatttcatacaacaaacta---
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      242075 225 -  16742782 gc-aatgcatttgtgtgacttgataatcaaacagtaaaaagttatgcagtcagcagcc---taactcccactgcc-gccccat-ccct---gacagctctcacaccttctggactctgtgcctgtcgctttcacgttcaggcttccagaatt-acttttgcaaatgcaagtgaacgcttg--------tgcaagttcatcaccctcctcccatcttacacaaaagatttcacacaacaaacta---
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90547272 226 -  91010382 gc-aatgcattggtgtgacttgataatcaaacagcaaaaagttatgcagtcagcagcc---taagtcccactgcc-gccccaccccct---gacagctctcacaccttctggactctgtgcctgttgctttcatgttcaggcttccagaatt-acttttgcaaatgcaagtgaacgcttg--------tgcaagttcatcaccctcctcccatcttacacaaaagatttcatacaacaaacta---
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      138847 226 -    438239 gc-aacgcatttgtgtgacttgataatcaaacagtaaaaagttatgcagtcagcagcc---taactcccactgcc-gccccatcccct---gacagctctgacaccttccggactctgtgcctgttgctttcatgttcaggcttccagaatt-acttgtgcaaatgcaagtgaacgcttg--------tgcaagttcatcaccctcctcccatcttacacaaaagatttcacacaacaaactg---
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      174413 226 -    514179 gc-aatgcatttgtgtgacttgataatcaaacagtaaaaagttatgcagcctgcagcc---taactcccactgct-gccccatcccct---gccagctctcacaccttccggactctgtgcctgttgctttcatgttcaggcttccagaatt-acttttgcaaatgcaagtgaatgcctg--------cgcaagttcatcaccctcctcccatcttacacaaaagatttcatacaacgaacta---
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15987992 213 +  16417988 GC-AATGCATTTGTGTGGCTTGATAATGAAACAGTAAAGT-TCATGTG---------T---CAACTCCCACTGT---CCCCCATCCCT---GCCAGCTCCCA-GCCCTGCCTACTCTGTGTCTGCTGTTTTTGTGTTCAGGCTTCCAGAATTCACTTTTGCAAATGCAAGTGAACGGCTG--------TGCGGGCTCATC-CCCTCCTCCCGTCTTACACAAAAGGTTTCCTACAGCAATCTG---
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       69104 213 +    298490 GC-AATGCATTTGTGTGGCTTGATAATCAAACAGTAAAGT-TTATGCG---------T---CAACTCCCACTG----CCCCCACCCCT---GCCGGCTCCCA-CCCCTCCCTACTCTGCGCCTGCTGTTTTCACGTTCAGGCTTCCAGAATTCACTTTTGCAAATGCAGGTGAACGCCTG--------TGCGGGCTCATCACCCTCCTCCCGCCTTACACAAAAGGTTTCCTACAACAAACAG---
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25400071 214 -  25620257 GC-AATGCATTTGTGTGGCTTGATAATCAAACAGTAAAGA-TTATGCG---------T---CGACTCCCACTGT---CCCCCATCCCT---GCCAGCTCCCA-GCCCTCCCTGCTCTGTGCCTGCTGTTTTCACGTTCAGGCTTCCAGAATTCACTTTTGCAAATGCAAGTGAACGCCTG--------TGCGGGCTCCTCGCCCCCCTCCCGTCTTACACAGAAGGTTTCCTACAACAAGCTA---
i aotNan1.NW_018503740v1   C 0 I 64
s otoGar3.GL873745           1858173 236 -   2165740 GC-AAAGCACTTTTGTGACTGGAGTAGGGATCAGTGAAAG-TTCTTTTGGAAGAAGACTGGTGGCTGCCCCTCCCAACTACAGCCCCTGTGGCTTAGTCTGAGGCTTTCCAAGCATTCAACTGGCGTTCATCTGGACCATTCACCCTACATT-TATCTTTTCAAGGCAAGTGGGTACGGGAACAGGGACACAGGACCATCACCCTCC----ATCTCACACAAAGG---CCGCGCAGCAAACAACTG
i otoGar3.GL873745         C 0 C 0
e calJac3.chr2             203823247 838 + 204313951 M
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=239811.000000
s hg38.chr5_KI270793v1_alt     40599 36 +    126136 TGCTT--CACCGTTTGTTTTCCTAATGATACTGCATGG
s panTro5.chr5             181308003 36 - 181907262 TGCTT--CACCGTTTGTTTTCCTAATGATACTGCATGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028454 36 - 183735486 TGCTT--CACCGTTTGTTTTCCTAATGATACTGCATGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115397 36 +    698298 TGCTT--CACCGTTTGTTTTCCTAATGATACTGCATGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542035 36 - 121039945 cgctt--caccgtttcttttcctaatgatactgcatgg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179497182 36 - 180051392 cgctt--caccttttcttttcctaatgatactgcatgg
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      224381 38 -   1764207 cgcttcacaccttttcttttcctaatgatactgcatgg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      242300 36 -  16742782 cgctt--caccttttcttttcctaatgatactgcatgg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90547498 36 -  91010382 cgctt--caccttttcttttccTAATGATGCTGCATGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      139073 36 -    438239 cgctt--caccttttcttttcctaatgatactgcatgg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      174639 35 -    514179 cgctt--ca-cttttcttttcctaatgatactgcatgg
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15988205 36 +  16417988 TGCTT--CACCCTTTCTTTTCCTAACAATATTGCATGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       69317 36 +    298490 CGCTT--CACCCGTTCTTTTCCTGACGATATTGCATGG
i cebCap1.NW_016108158v1   C 0 I 78
s otoGar3.GL873745           1858409 36 -   2165740 CTCTC--CACCTTTTCTTTTCCTCGAAATGCTGCAGGA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25400285 64 -  25620257 I
e calJac3.chr2             203823247 838 + 204313951 M
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=22873.000000
s hg38.chr5_KI270793v1_alt     40635 4 +    126136 AGct
s panTro5.chr5             181308039 4 - 181907262 AGct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028490 4 - 183735486 AGct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115433 4 +    698298 AGct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542071 4 - 121039945 agct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179497218 4 - 180051392 agct
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      224419 4 -   1764207 agct
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      242336 4 -  16742782 agct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90547534 4 -  91010382 AGCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      139109 4 -    438239 agct
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      174674 4 -    514179 agct
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15988241 4 +  16417988 CATt
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1858445 4 -   2165740 AGTT
i otoGar3.GL873745         C 0 I 273
e aotNan1.NW_018503740v1    25400285 64 -  25620257 I
e cebCap1.NW_016108158v1       69353 78 +    298490 I
e calJac3.chr2             203823247 838 + 204313951 M
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=16852.000000
s hg38.chr5_KI270793v1_alt     40639 3 +    126136 tgc
s panTro5.chr5             181308043 3 - 181907262 tgc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028494 3 - 183735486 tgc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115437 3 +    698298 tgc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542075 3 - 121039945 tgc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179497222 3 - 180051392 tgC
i rheMac8.chr6             C 0 I 89
s macNem1.NW_012012389v1      224423 3 -   1764207 tgC
i macNem1.NW_012012389v1   C 0 I 89
s cerAty1.NW_012009470v1      242340 3 -  16742782 tgc
i cerAty1.NW_012009470v1   C 0 I 86
s chlSab2.chr4              90547538 3 -  91010382 TGC
i chlSab2.chr4             C 0 I 42
s manLeu1.NW_012110441v1      139113 3 -    438239 tgc
i manLeu1.NW_012110441v1   C 0 I 86
s colAng1.NW_012118799v1      174678 3 -    514179 tgc
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15988245 3 +  16417988 ttc
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25400285 64 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       69353 78 +    298490 I
e calJac3.chr2             203823247 838 + 204313951 M
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=38252.000000
s hg38.chr5_KI270793v1_alt     40642 49 +    126136 ttgcttgcttctctttct--ttctttctttctttcattctttctcttttgt-
s panTro5.chr5             181308046 51 - 181907262 ttgcttgcttctctttctctttctttctttcgttcattctttctcttttgt-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028497 51 - 183735486 ttgcttgcttctctttctctttctttctttcgttcattctttctcttttgt-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115440 47 +    698298 ttgcttgcttctctttct----ctttctttcgttcattctttctcttttgt-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542078 33 - 121039945 t-------ttctctctct--ctttctctttctttcattcttt----------
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      174681 50 -    514179 tTTctcccttccttccttccttccttccttccttccttccttc-cttctct-
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15988248 44 +  16417988 -------tttctctttct-ctttttcttttctttctttctttctttctttga
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25400285 64 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       69353 78 +    298490 I
e calJac3.chr2             203823247 838 + 204313951 M
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      139116 86 -    438239 I
e chlSab2.chr4              90547541 42 -  91010382 I
e cerAty1.NW_012009470v1      242343 86 -  16742782 I
e macNem1.NW_012012389v1      224426 89 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179497225 89 - 180051392 I

a score=5948.000000
s hg38.chr5_KI270793v1_alt     40691 5 +    126136 ctgtc
s panTro5.chr5             181308097 5 - 181907262 ctgtc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028548 5 - 183735486 ctgtc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115487 5 +    698298 ctgtc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542111 4 - 121039945 -tgtc
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      174731 5 -    514179 ctctc
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15988292 4 +  16417988 -ttgt
i saiBol1.JH378155         C 0 I 454
s aotNan1.NW_018503740v1    25400349 5 -  25620257 ctttc
i aotNan1.NW_018503740v1   I 64 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       69353 78 +    298490 I
e calJac3.chr2             203823247 838 + 204313951 M
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      139116 86 -    438239 I
e chlSab2.chr4              90547541 42 -  91010382 I
e cerAty1.NW_012009470v1      242343 86 -  16742782 I
e macNem1.NW_012012389v1      224426 89 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179497225 89 - 180051392 I

a score=17327.000000
s hg38.chr5_KI270793v1_alt     40696 17 +    126136 tttctttcatctttttc
s panTro5.chr5             181308102 17 - 181907262 tttctttcatctttttc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028553 17 - 183735486 tttctttcatctttttc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115492 17 +    698298 tttctttcatctttttc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542115 11 - 121039945 tttctttc------ttc
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      174736 17 -    514179 tttctttctttcttctt
i colAng1.NW_012118799v1   C 0 I 3
s saiBol1.JH378155          15988750 17 +  16417988 tttctttcttcctttta
i saiBol1.JH378155         I 454 C 0
s aotNan1.NW_018503740v1    25400354  7 -  25620257 --------ttccttt--
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       69353 78 +    298490 I
e calJac3.chr2             203823247 838 + 204313951 M
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      139116 86 -    438239 I
e chlSab2.chr4              90547541 42 -  91010382 I
e cerAty1.NW_012009470v1      242343 86 -  16742782 I
e macNem1.NW_012012389v1      224426 89 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179497225 89 - 180051392 I

a score=40789.000000
s hg38.chr5_KI270793v1_alt     40713 20 +    126136 ttctttccttctctttctct
s panTro5.chr5             181308119 20 - 181907262 ttctttccttctctttctct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028570 20 - 183735486 ttctttccttctctttctct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115509 20 +    698298 ttctttccttctctttctct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542126 20 - 121039945 tttcctctttctctttctcc
i nomLeu3.chr6             C 0 C 0
s chlSab2.chr4              90547583 19 -  91010382 ttccttccttccttttctc-
i chlSab2.chr4             I 42 C 0
s colAng1.NW_012118799v1      174756 20 -    514179 ttctttctttctctttctct
i colAng1.NW_012118799v1   I 3 C 0
s saiBol1.JH378155          15988767 20 +  16417988 ttttctctttatttttcttt
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25400361 13 -  25620257 -------tctctttttcttt
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       69353 78 +    298490 I
e calJac3.chr2             203823247 838 + 204313951 M
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      139116 86 -    438239 I
e cerAty1.NW_012009470v1      242343 86 -  16742782 I
e macNem1.NW_012012389v1      224426 89 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179497225 89 - 180051392 I

a score=21018.000000
s hg38.chr5_KI270793v1_alt     40733 19 +    126136 cttccttcctt--------tccccttc
s panTro5.chr5             181308139 23 - 181907262 cttccttccttc----ctttccccttc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028590 23 - 183735486 cttccttccttc----ctttccccttc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115529 27 +    698298 cttccttctttcctttctttccccttc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542146 23 - 121039945 ctccctccctcc----cttccttcctc
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      242429 11 -  16742782 cttctttcctt----------------
i cerAty1.NW_012009470v1   I 86 C 0
s chlSab2.chr4              90547602 19 -  91010382 cttctttccttc----ctccctc----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      139202 19 -    438239 cttctttccttc----ctccctc----
i manLeu1.NW_012110441v1   I 86 C 0
s colAng1.NW_012118799v1      174776 19 -    514179 tttccttccttc----cttcctt----
i colAng1.NW_012118799v1   C 0 I 20
s saiBol1.JH378155          15988787 17 +  16417988 cttctttctct-----ttctct-----
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25400374 17 -  25620257 cttctttctct-----ttctct-----
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       69353 78 +    298490 I
e calJac3.chr2             203823247 838 + 204313951 M
e canFam3.chr34             11702531 3063 +  42124431 I
e macNem1.NW_012012389v1      224426 89 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179497225 89 - 180051392 I

a score=133298.000000
s hg38.chr5_KI270793v1_alt     40752 44 +    126136 cctcccttcctccctccctcccttccttcct--tcttcccttcCT------------------------A
s panTro5.chr5             181308162 44 - 181907262 cctcccttcctccctccctcccttccttcct--tcttcccttcct------------------------a
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028613 44 - 183735486 cctcccttcctccctccctcccttccttcct--tcttcccttcct------------------------a
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115556 44 +    698298 cctcccttcctccctccctcccttccttcct--tgttcccttcct------------------------a
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542169 46 - 121039945 cctccctccctcccttcttcccttcctaccttctctttctctctc------------------------t
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179497314 43 - 180051392 cctccctccctctctccct-tcttccttcct--tcctgccttcct------------------------g
i rheMac8.chr6             I 89 C 0
s macNem1.NW_012012389v1      224515 43 -   1764207 cctccctccctctctccct-tcttccttcct--tcctgccttcct------------------------g
i macNem1.NW_012012389v1   I 89 C 0
s cerAty1.NW_012009470v1      242440 43 -  16742782 cctccctccctctctccct-tcttccttcct--tcctgccttcct------------------------g
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90547621 35 -  91010382 --------cctctctccct-tcttccttcct--tcctgccttcct------------------------g
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      139221 35 -    438239 --------cctctctccct-tcttccttcct--tcctgccttcct------------------------g
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      174815 67 -    514179 cctccattcctctctccct-tcttccttcct--tccttctttccttccttcctcccttcctactttcccg
i colAng1.NW_012118799v1   I 20 C 0
s saiBol1.JH378155          15988804 19 +  16417988 ------------CCTTCCTCCCTTCCTTCCT---------------------------------------
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25400391 27 -  25620257 ------------ccttcctcccttcctttct--cgttcttt-----------------------------
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       69353 78 +    298490 I
e calJac3.chr2             203823247 838 + 204313951 M
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=89643.000000
s hg38.chr5_KI270793v1_alt     40796 29 +    126136 CCCTCTCTT------TCtttctttctttattttct
s panTro5.chr5             181308206 21 - 181907262 ccCtctctt------tctttctttc--------ct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028657 21 - 183735486 ccCtctctt------tctttctttc--------ct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115600 29 +    698298 ccttctctt------tctttctttctttccttctc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542215 29 - 121039945 ctctctctc------tctctctttctttccttctc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179497357 27 - 180051392 ccttcTCTt--------tctctttctttccttctc
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      224558 27 -   1764207 ccttcTCTt--------tctctttctttccttctc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      242483 27 -  16742782 ccttctctt--------tctCGttctttccttctc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90547656 31 -  91010382 ccttctctt----tctCtctctttctttccttctc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      139256 31 -    438239 ccttctctt----tctCtctctttctttccttctc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      174882 35 -    514179 ctttctctttctctctctctctctctttccttctc
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203824087 29 + 204313951 CCTTCTCGT----TCTttctctctctttccttc--
i calJac3.chr2             M 838 I 2
s saiBol1.JH378155          15988823 26 +  16417988 ---CCTCAT----TCTttttctctctttccttc--
i saiBol1.JH378155         C 0 I 2
s aotNan1.NW_018503740v1    25400418 15 -  25620257 ------------------ctctctctttccttc--
i aotNan1.NW_018503740v1   C 0 I 2
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       69353 78 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=1627322.000000
s hg38.chr5_KI270793v1_alt     40825 194 +    126136 tctttctccctgagacagggtctcactctgtcacccaggctggagggcagtggtgcagtcctggcttactgcagcctcaacgtcctgggctcaagcaatccacccacctcagcctcccaaaatgctaggataacaggcatgagccgccgtgcctggctGGAGTTCTTTCAGGATGAGATTTAAACCATATCTAA
s panTro5.chr5             181308227 194 - 181907262 tctttctccctgagacagggtctcactctgtcacccaggctggagggcagtggtgcagtcctggcttactgcagcctcaacgtcctgggctcaagcaatccacccacctcagcctcccaaaatgctgggataacaggcatgagccgccgcgcctggctGGAGTTCTTTCAGGATGAGATTTAAACCATCTCTAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028678 194 - 183735486 tctttctccctgagacagggtctcactctgtcacccaggctggagggcagtggtgcagtcctggcttactgcagcctcaacgtcctggactcaagcaatccacccacctcagcctcccaaaatgctgggataacaggcatgagccgccgcgcctggctGGAGTTCTTTCAGGATGAGATTTAAACCATCTCTAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115629 194 +    698298 tctttctccctgagacagggtctcactctgtcacccaggctgaagggcagtggtgcaatcctggcttactgcagcctcaacgtcctgggctcaagcaatccacccacctcagcctcccaaaatgctgggataacaggcatgagccgccgcgcctggctGGAGTTCTTTCACGATGAGATTTAAACCATCTCTAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542244 194 - 121039945 tctttctccctgaggcagggtctcactctgtcacccaggctggagggcagtggtgcaatcttggcttactgcagcctcaacctcctgggctcgagcaatccacccacctcagcctcccaaaatgctgagataacaggcatgagccgccgtgcctggctaGAGTTCTTTCAGGATAAGATTTAAACCACCTCTAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179497384 194 - 180051392 tctttctccctgagacagggtctcactctgtcacccaggctggagtgcagtggtgcagtcttggcttactgcagcctcaacctcctgggctcaagcaatgtacccacctcagcctcccaaaatgctgggataacaggcatgagctgccacgcctgactggagtttttTCAGGATGAGATTTAGACCACCTCTAA
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      224585 194 -   1764207 tctttctccctgagacagggtctcactctgtcacccaggctggagtgcagtggtgcagtcttggcttactgcagcctcaacctcctgggctcaagcaatgtacccacctcagcctcccaaaatgctgggataacaggcatgagctgccacgcctgactggagtttttTCAGGATGAGATTTAGACCACCTCTAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      242510 193 -  16742782 tctttctccctgagacagggtctcactctgtcacccaggctggagtgcagtggtgcagtcttggcttattgcagcctcaacctcctgggctcaagcaatgcacccacctcag-ctcccaaagtgctgggataacaggcatgagctgccacgcctgactGGAGTGTTTTCAGGATGAGATTTAGACCACCTCTAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90547687 185 -  91010382 tctttctccctgagacagggtc--------tcacccaggctggagtgcagtggtgcagtcttggcttactgcagcctcaacctcctgggctcaagcaatgtacccacctcagcctcccaaaatgctgggataacaggcatgagctgccacacctgactGGAGTTTCTTCAGGATGAGATTTAGACC-CCTCTAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      139287 194 -    438239 tctttctccctgagacagggtctcactctgtcacccaggctggagtgcagtggtgcagtcttggcttactgcagcctcagcctcctgggctcaagcaatgcacccacctcagcctcccaaaatgctgggataacaggcatgagctgccacgcctgactggagtttttTCAGGATGAGATTTAGACCACCTCTAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      174917 194 -    514179 tctttctcgctgagacagggtctcactctgccacccaggctggagtgcagtggtgcaatcttggcttactgcagcctcaacctcctgggctcaagcaatgcacccacctcagcctcccaaaatgctgagataacaggcatgagctgccacgcctgactGGAGCTTTTTCAGGATGAGATTTAGACCACTTCTAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203824118 187 + 204313951 tctttctctctgaggcagggtctcactctgtcacccaggctggagtgcagtggtgcaatcttggctcactgtagcctcaacctcctgggcttgagcaatccacctacctcagcctccgaaagtgctgagataacaggGATGA------GCACCTGGCTGGAGTT-TTTCAGGATGAGTTTTAAACCATTTCTAA
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          15988851 193 +  16417988 tctttctctctgaggcagggtctcaccctgtcacccaggctggagtgcagtgatgcaatcttggctcactgcagcctcaacttcctgggcttgagcaatccacctacctcagcctccaaaagtgctgagataacaggcatgagccaccgcacctggctggagtt-tttCAGGATGAGTTTTAAAGCATTTCTAA
i saiBol1.JH378155         I 2 C 0
s cebCap1.NW_016108158v1       69431 191 +    298490 tctttctctctgaggca-ggtctcactctgtcacccaggctggagtgcagcggtgcattcttggctcactgcagcctcagcttcctgggcttgagcaatccacctacctcagcctccaaaagtgctgagataacaggcatgagccaccgcacctggctggagtt-tttcaggacgagtttt-aaccatTTCTAA
i cebCap1.NW_016108158v1   I 78 C 0
s aotNan1.NW_018503740v1    25400435 193 -  25620257 tctttctctctgaggcagggtctcactctgtcacccaggctggagtgcagtggtgcaatcttggctcactgcagcctcgacctcctgggcttaagcagtcggcctacgtcagcctccgaaagtgctgagataacaggcatgagccaccgcacctggctGGAGTT-TCTCAGGATGAGTTTTAAACCATTTCTAA
i aotNan1.NW_018503740v1   I 2 I 17
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=98107.000000
s hg38.chr5_KI270793v1_alt     41019 29 +    126136 CATTGACTTCCAGTATGTGTATCGTATGT
s panTro5.chr5             181308421 29 - 181907262 CATTGACTTCCAGTATGTGTATCGTATGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028872 29 - 183735486 CATTGACTTCCAGTATGTGTATCGTATGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115823 29 +    698298 CATTGACTTCCAGTATGTGTATTGTATGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542438 18 - 121039945 CATTGACTTCCA-----------GTATGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179497578 18 - 180051392 CATTGACTTTCA-----------GTTTGT
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      224779 18 -   1764207 CATTGACTTTCA-----------GTATGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      242703 18 -  16742782 CATTGACTTTCA-----------GTATGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90547872 18 -  91010382 CATTGACTTTCA-----------GTATGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      139481 18 -    438239 CATTGACTTTCA-----------GTATGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      175111 18 -    514179 CATTGACTTTCA-----------GTATGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203824305 18 + 204313951 CATCAATTTTCA-----------GCACTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15989044 18 +  16417988 CATCGATTTTCA-----------GTACTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       69622 18 +    298490 CATCGATTTTCA-----------GTACTT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25400628 17 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=3572573.000000
s hg38.chr5_KI270793v1_alt     41048 419 +    126136 GTATCTTCAGGGGCGCAGCCTCAGCACCTCTGGATGGAGGGTACCTCGGCCAAGGCTCTTTCCCTAGGGTTCTGTGTGATTGAGGGTCCTGTCTTTGAAGCTGTT-GGGAGGAGCGGGGGCACACCCTGACCT-CCCCC--CCGTGCCCCACCCCCCAGTGCTGCGTTTGGAGCAGAGCACTCTCGGAGTGCCATGGTCCCCATGTTCAGTCACCTGCTGGGTGCCAGGCTCtgcataaccccattacctctacatcaagtcctgccagggcagaaatattatctccattttccagatgaggagatggagacccaagagctgcagagctgtctcagatgggacagtgagtgagtgacagagccagggtcaaatcagcatgttgtcaaagtctatgctgtcctcatgcctcactgccTTCTcat
s panTro5.chr5             181308450 419 - 181907262 GTATCTTCAGGGGCGCAGCCTCAGCACCTCTGGATGGAGGGTACCTCGGCCAAGGCTCTTTCCCTAGGGTTCTGTGTGATTGAGGGTCCTGTCTTTGAAGCTGTT-GGGAGGAGCGGGGGCACACCCTGACCT-CCCCC--CCATGCCCCACCCCCCAGTGCTGCGTTTGGAGCAGAGCACTCTCGGAGTGCCATGGTCCCCATGTTCAGTCACCTGCTGGGTGCCAGGCTCtgcataaccccattacctctacatcaagtcctgccagggcagaaatgttatctccattttccagatgaggagatggagacccaagagctgcagagctgtctcagatgggacagtgagtgagtgacagagccagggtcaaatcagcatgttgtcaaagtctatgctgtcctcatgcctcactgccTTCTCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183028901 419 - 183735486 GTATCTTCAGGGGCGCAGCCTCAGCACCTCTGGATGGAGGGTACCTCGGCCAAGGCTCTTTCCCTAGGGTTCTGTGTGATTGAGGGTCCTGTCTTTGAAGCTGTT-GGGAGGAGCGGGGGCACACCCTGACCT-CCCCC--CCATGCCCCACCCCCCAGTGCTGCGTTTGGAGCAGAGCACTCTCGGAGTGCCATGGTCCCCATGTTCAGTCACCTGCTGGGTGCCAGGCTCtgcataaccccattacctctacatcaagtcctgccagggcagaaatgttatctccattttccagatgaggagatggagacccaagagctgcagagctgtctcagatgggacagtgagtgagtgacagagccagggtcaaatcagcatgttgtcaaagtctatgctgtcctcatgcctcactgccTTCTcac
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      115852 418 +    698298 GTATCTTCAGGGGCGCAGCCTCAGCACCTCTGGATGGAGGGTACCTCAGCCAAGGCTCTTTCCCTAGGGTTCTGTGTGATTGAGGGTCCTGTCTTTGAAGCTGTT-GGG-GGAGCGGGGGCACACCCTGACCT-CCCCC--CCGTGCCCCACCCCCCAGTGCTGCGTTTGGAGCAGAGCACTCTCAGAGTGCCATGGTCCCCAtattcagtcacctgctgggtgccaggctctgcataaccccattacctctacatcaagtcctgccagggcagaaatattatctccattttccagatgaggagatggagacccaagagctgcagatctgtctcagatgggacagtgagtgagtgacagagccagggtcaaatcattatgttgtcaaagtctatgctgtcctcatgcctcactgccTTCTcat
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542456 419 - 121039945 GTATCTTCAGGGGTGCAGCCTCAGCACCTCTGGATGGAGGGTACCTCGGCCAAGGCTCTTTCCCTAGGGTTCTGTGTGATTGAGGGTCCTGTCTTTGAAGCTGTT-GGGGGGAGCGGGGGCACACCCTGACCT-CCCCC--CCATGCCCCACCCCGCAGTGCTGCGTTTGGAGCAGAGCACTCTCGGAGTGCCATGGTCCCCATGTTCAGTCACCTGCTGGGTGCCAGGCTCtgcataaccccgttacctttacatcaagtcctgccagggcagaaatattatctccattttccagatgaggagatggagacccaagagctgcagatctgtctcagatgggacagccagtgagtgacagagccaggatcaaatcagcatgttgtcaaagtccatgctctcctcatgcctcactgccTTCTcat
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179497596 419 - 180051392 GTGTTTTCAGGGGCACAGCCTCAGCACCTCTGGATGGAGGGGACCTCGGCCAAGGCTCTTTCCCTAGAGTTCTGTGTGATTGAGGGTCCTGCCTTTGAAGCTGATGGGGGGGAGCGGGGACACACCCTGACCT-CCCCC--CCATGCCCCACCCCCCAGTGCTGCGTTTGGAGCAGAGCACTCTTAGAGTGCCATTGCCCccgtgttcagtcacctgctgggtgccaggctctgcataaccccgttacctttacatcaagtcctgccagggcagaaatattatc-ccattttccagatgaggagatggagacccaagagctgcaggtctgtctcagatgggacagccagtgagtgacacggccagggtcaaatcagcatgttgtcaaagtccatggtctcttcatgcctcacTGACTTCTCAT
i rheMac8.chr6             C 0 I 20
s macNem1.NW_012012389v1      224797 419 -   1764207 GTGTTTTCAGGGGCACAGCCTCAGCACCTCTGGATGGAGGGGACCTCGGCCAAGGCTCTTTCCCTAGAGTTCTGTGTGATTGAGGGTCCTGCCTTTGAAGCTGATGGGGGGGAGCGGGGACACACCCTGACCT-CCCCC--CCATGCCCCACCCCCCAGTGCTGCGTTTGGAGCAGAGCACTCTTAGAGTGCCATTGCCCCCGTGTTCAGTCACCTGCTGGGTGCCAGGCTCtgcataaccccgttacctttacatcaagtcctgccagggcagaaatattatc-ccattttccagatgaggagatggagacccaagagctgcaggtctgtctcagatgggacagccagtgagtgacacggccagggtcaaatcagcatgttgtcaaagtccatggtctcttcatgcctcactgccTTCTcat
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      242721 420 -  16742782 GTGTTTTCAGGGGCACAGCCTCAGCACCTCTGGATGGAGGGGACCTCGGCCAAGGCTCTTTCCCTAGAGTTCTGTGTGATTGAGGGTCCTGCCTTTGAAGCTGATGGGGGGGAGCGGGGACACATCCTGACCTCCCCCC--CCATGCCCCACCCCCCAGTGCTGTGTTTGGAGCAGAGCACTCTTGGAGTGCCATTGCCCccgtgttcagtcacctgctgggtgccaggctctgcataaccccgttagctttacatcaagtcctgccagggcagaaatattatc-ccattttccagatgaggagatggagacccaagagctgcaggtctgtctcagatgggacagccagtgagtgacacggccagggtcaaatcagcatgttgtcaaagtccatggtctcctcatgcctcactgccTTCTcat
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90547890 419 -  91010382 GTGTTTTTAGGGGTGCAGCCTCAGCACCTCTGGATGGAGGGGACCTCAAACAAGGCTCTTTCCCTAGAGTTCTGTGTGATTGAGGGTCCTGCCTTTGAAGCTGATGGGGGGGAGCGGGGACACACCCTGACCT-CCCCC--CCATGCCCCACCCCCCAGTGCTGCGTTTGGAGCAGAGCACTCTTGGAGTGCCATTGCCCCCGTGTTCAGTCACCTGCTGGGTGCCAGGCTCtgcataaccccgttacctttacatcaagtcctgccagggcagaaatattatc-ccattttccagatgaggagacggagacccaagagctgcaggtctgtctcagatgggacagccagtgagtgacacggccagggtcaaatcagcatgttgtcaaagtccatggtctcctcatgcctcacTGCCTTCTcat
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      139499 419 -    438239 GTGTTTTCAGGGGCACAGCCTCAGCACCTCTGGATGGAGGGGACCTCGGCCAAGGCTCTTTCCCTAGAGTTCTGTGTGATTGAGGGTCCTGCCTTTGAAGCTGATGGGGGGGAGCGGGGACACACCCTGACCT-CCCCC--CCATGCCCCACCCCCTAGTGCTGCGTTTGGAGCAGAGCACTCTTGGAGTGCCATTGCCCCCGTGTTCAGTCACCTGCTGGGTGCCAGGCTCtgcataaccccgttacctttacatcaagtcctgccagggcagaaatattatc-ccattttccagatgaggagatggagacccaagagctgcaggtctgtctcagatgggacagccagtgagtgacacggagagggtcaaatcagcatgttgtcaaagtccatggtctcctcatgcctcactgccTTCTcat
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      175129 418 -    514179 GTGTTTTCAGGGGCACAGCCTCAGCACCTCTGGATGGAGGGGACCTCGGCCACGGCTCTTTCCCTAGAGTTCTGTGTGATTGAGGGTCCTGCCTTTGAAGCTGAT-GGGGGGAGCGGGGGCACACCCTGACCT-CCCCC--ACATGCCCCACCCCCCAGTGCTGCGTTTGGAGCAGAGCACTCTTGGAGTGCCATTGCCCctgtgttcagtcacctgctgggtgccaggctctgcataaccccattacctttacatcaagtcctgccagggcagaaatattatc-ccattttccagatgaggagatggagacccaagagctgcaggtctgtctcagatgggacagccagtgagtgagagagtcagggtcaaatcagcatgttgtcaaagtccatggtctcctcatgcctcactgccTTCTcat
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203824323 409 + 204313951 GTGTCTTCAGGGGTGCAGGCTCAGCACCACGGAATGGAGGGGATGTTGGCCAAGGATCTTCCCCTGGGGTTCTGTGTGATTGA-GGTCCTGCCTTTGAAGGTGTT-GG-------GGGGGCACACCCTGACCT-CCCCCCACAGTGCCCAACCCCCCAGTGCTGCATTTGGAG-AGAGCACTCTCAGAGTGCCATGGCCCCCATGCTCAGTCACCTTCTGGGTGCCAGGCTCtgcataaccccgttacctttacatcaagtccagccaggacagaactgttatctccattttccagatgaggaggtggagacacaagaactgcagctctgcctcagatgggacagccagtgagtggcagagccagggtcaaatctgcatgttgtcgaagtccacgctctcctcatgcctcactgcctcct---
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15989062 420 +  16417988 GTGTCTTCAGGGGTGCAGGCTCAGCACCGCTGGATGGAGGCGACCTCGGCCAAGGCTCTTCTCCTAGGGTTCTGTGTGATTGAGGGTCCTGCCTTTGAAGGTGTT-GGGGGAGGTGGGGGCACGCCCTGACAT-CCCCCCACCATGCCCAACCCCCTAGTGCTGCATTTGGAG-AGAGCAGTCTCAGAGTGCCATGGCCCCCATGCTCAGTCACCTGCTGGGTGCCAGGCTCtgcataattccattacctttacgtcaagtccagccagggcagaactattatctccattttccagatgaggaggtggagatgcaagagctgcagatctgtctcagatgggacagccagtggctggcagagccagggtccaatctgcatgttgtcaaagtccatgctctcctcatgcctcactgcctcctcAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       69640 418 +    298490 GTGTCTTCAGGGGTGCAGGCTCAGCACCACTGGATGGAGGGGACCTCGGCCAAGGCTCTTCCCCGAGGGTTCTGTGCGACTGAGGGTCCTGCCTTTGGAGGTGTT-GGGGATGGTGGGGGCACGCCCGGACCT-CCCCCCACCATGCCCAACCCCCCAGTGCTGCATTTGGAG-AGAGCACTCTCAGAGTGCCATGGTCCCCATGCTCAGTCACCTGCTGGGTGCCAGGCTCtgcataaccccattacctttacatcaagtcgagccaggacagaactattatctccattttccagatgaggaggtggagatgcaagagctgcagatctgtctcagatgggacagccagtgaatggcagagccagggtcaaatctgca--ttgtcaaagtccatgctctcctcatgcttcactgcctcctcat
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25400645 419 -  25620257 GTGTCTTCAGGGGTGCAGGCTCAGCACCACTGGATGGAGGGGACCTCGGTCAAGGCTCTTCCCCTAGGGTTCTGTGTGATTGAGGGTCCTGCCTTTGAAGGTGTT-GC-GGGGGTGGGGGCATGCCCTAACCT-CCCCCCACCATGCCCAACCCCCCAGTGCTGCATTTGGAG-AGAGCACTCTTAGAGTGCCATGGCCCCCATGCTCAGTCACCTGCTGGGTGCCAGGCTCtgcataatcccgttacctttacatcaagtccagccaggacagaactattatctccattttccagatgaggaggtggagacgcgggagctgcaggtctgtctcagacgggacagccagtgagtggcagagccagggtcaaatctgcgtgttgtcaaagtccatgctctcctcgtgcctcactgcctcctcAT
i aotNan1.NW_018503740v1   I 17 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M

a score=532680.000000
s hg38.chr5_KI270793v1_alt     41467 73 +    126136 ccatccctgaatccatccattcaacctgttcattccctcatctatccacccacccactccctgacctatccag
s panTro5.chr5             181308869 73 - 181907262 CCATCCCTGAATCCATCCATTCAACCTGTTCATTCCCTCATCTATccacccacccactccctgacctatccag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183029320 73 - 183735486 ccatccctgaatccatccattcaacctgttcattccctcatctatccacccacccactccctgacctatccag
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      116270 73 +    698298 ccatccctgaatccatccattcaacctgttcattccctcatctatccacccacccactccttgacctatccag
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542875 73 - 121039945 ccatccctgaatccatccattcaacctgttcattccctcatctacccatccacctgctccctgacctatccag
i nomLeu3.chr6             C 0 C 0
s macNem1.NW_012012389v1      225216 73 -   1764207 ccatccctgagtccaaccattcaacctgttcattccctcatccacccacccacccactctctgacctatccag
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      243141 73 -  16742782 ccatccctgagtccaaccattcaacctgttcattccctcatccacccacccacccactctctgacctatccag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90548309 73 -  91010382 ccatctctgagtccaaccattcaacctgttcattccctcatccacccacccacccactctctgacctatccag
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      139918 73 -    438239 ccatccctgagtccaaccattcaacctgttcattccctcatccacccacccacccactctctgatctatccag
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      175547 73 -    514179 ccatccctgagtccaaccattcaacctgttcattccctcatctacccacccacccactctctgacctatccag
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203824732 60 + 204313951 -------------cATCCATTAAACCTGTTCATTCCCTCACCCAACCACCCACCTACTCTCTGACTcatccag
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15989482 73 +  16417988 CCATGCCTGAATCCATCCATTAAACCTGTTCATTCCATcacccatccacccacctactctctgacccatccag
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       70058 73 +    298490 ccattcctgaatccatccattaaacctgttcattccctcacccattcacccacctactctctgacccatccag
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401064 73 -  25620257 CCATGCCTGAATCCATCCATTAAACCTGTTCATTCCCTcacccatccacccacctactctctgagccatccag
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I

a score=207103.000000
s hg38.chr5_KI270793v1_alt     41540 41 +    126136 ccacacactcacccttctag------------ccaccc----------------------------atccatccactcacc
s panTro5.chr5             181308942 41 - 181907262 ccacgcactcacccttctag------------ccaccc----------------------------atccatccactcacc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183029393 41 - 183735486 ccacgcactcacccttctag------------ccaccc----------------------------atccatccactcacc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      116343 40 +    698298 ccatgcactcacccttctag------------ccaccc----------------------------at-catccactcacc
i gorGor5.CYUI01015805v1   C 0 C 0
s macNem1.NW_012012389v1      225289 41 -   1764207 ccacccactcacccttctag------------ccacca----------------------------atccatccaCTCACC
i macNem1.NW_012012389v1   C 0 I 1241
s cerAty1.NW_012009470v1      243214 41 -  16742782 ccacccactcacccttctag------------ccacca----------------------------atccatccactcacc
i cerAty1.NW_012009470v1   C 0 I 28
s chlSab2.chr4              90548382 69 -  91010382 ccacccactcacccttctag------------ccaccaatccatccattcacccttctagccacccatccatccactcacc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      139991 41 -    438239 ccacccactcacccttctag------------ccacca----------------------------atccatccactcatc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      175620 41 -    514179 ccacccactaacccttctag------------ccacca----------------------------atccatccatttacc
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203824792 53 + 204313951 ccacccactcacccttccaaccactcatccatccaccc----------------------------acccatccagccacc
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15989555 37 +  16417988 ccacccactcacccttccag----------------cc----------------------------acccatccacccacc
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       70131 41 +    298490 ccacccactcacccttccaa------------ccactc----------------------------atccatccacccagc
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401137 37 -  25620257 ccacccactcacccttccaa----------------cc----------------------------actcatccatccacc
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I

a score=155573.000000
s hg38.chr5_KI270793v1_alt     41581 46 +    126136 cttctagccatccattcatccactcacccttctagccacccatcca
s panTro5.chr5             181308983 46 - 181907262 cttctagccatccattcatccacccacccttctagccacccatcca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183029434 22 - 183735486 cttctagccatccatccatcca------------------------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      116383 46 +    698298 cttctagccatccattcatccactcacccttctagccacccatcca
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      243283 46 -  16742782 cttctagccatccattcatccactccctcttctagccatccattca
i cerAty1.NW_012009470v1   I 28 C 0
s chlSab2.chr4              90548451 46 -  91010382 cttctagccatccattcatccactcccccttctagccatccattca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      140032 46 -    438239 cttctagccatccattcatccactccctcttctagccatccattca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      175661 46 -    514179 cttctagccacccatccatccactcacccttctagccatccattca
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203824845 42 + 204313951 ----cacttatccatccatccatccatccatccatccatccatcca
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15989592 42 +  16417988 ----cacttatccatccatccacctacctatccagccagccatcca
i saiBol1.JH378155         C 0 I 1554
s cebCap1.NW_016108158v1       70172 41 +    298490 ----cccttatccatccagccacccatccatcca-ccacccatcca
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401174 42 -  25620257 ----catccatccatccatctacctatccatccagccagccaccta
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I

a score=405726.000000
s hg38.chr5_KI270793v1_alt     41627 152 +    126136 ----------------tcca---------------------------------------------------------cccacccttctagccacccatccatccagccacccatccatccatccatccactcacccacccatccagccacccatccatccacccactt---atccatccatccacccacccatc---------cagcaacc---catccatccacccacccatccatcca
s panTro5.chr5             181309029 208 - 181907262 ----------------tccagccacccatccatccatccatccactcacccacccatccagccacccatccatcca-cccacccttctagccacccatccatccagccacccatccatccatccatccactcacccacccatccagccacccatccatccacccactt---atccatccatccacccacccatc---------cagcaacc---catccatccacccacccatccatcca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183029456 146 - 183735486 -----------------------------------------------------------------------------cccacccttctagccacccatccatccagccacccatccatccatccatccactcacccacccatccagccacccatccatccacccactt---atccatccatccacccacccatc---------cagcaacc---catccatccacc--accatccatcca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      116429 138 +    698298 ----------------tcca---------------------------------------------------------cccactcttctagcca-ccatccat-----cagccacccatccatccagccactcacccacccatccagccac--------ccacccactt---atccatccatccacccacccaca---------catccagc---cacccaaccacccacccatccatcta
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      243329 140 -  16742782 ----------------tcca---------------------------------------------------------ctcactcttctagccacccatccat------------ccacccacccatccactcacgcacccatccagccacccatccatctacccactt---atccatccatcgatccatccatc---------cacccacc---catccagcgatccatccatccatcca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90548497 143 -  91010382 ----------------tcca---------------------------------------------------------ctcacccttctagccacccatccat------------ccacccacccatccactcacgcacccatccagccacccatccatctacccacttatcatccatccatccatccatccatc---------cacctacc---catccagcgatccatccatccatcca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      140078 140 -    438239 ----------------tcca---------------------------------------------------------ctcacccttctagccacccatccat------------ccacccacccatccactcacgcacccatccagccacccatccatctacccactt---atccatccatcgatccatccatc---------cacccacc---catccagcgatccatccatccatcca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      175707 149 -    514179 ----------------tcca---------------------------------------------------------ctcccccttctagccacccatccat------------ccacccacccatccactcacgcacccatccagccacccatccatctacccactt---atccatctatccatccatccatcccatccagtcacccact---tatccatccatccatccatccatcca
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203824887 180 + 204313951 tccagccatccatccagcca----------------------------tccagccatccagccacccactcagccagcccacccacctagccagccaccgat------------ccatccgcccatccatccagtcacccatccatctacccatccagccatccagcc---atccatccacccacccaaccatc---------cagtcacc---catccatcca-ccacccaccca----
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       70213 150 +    298490 tcca-ccacccacccaacca---------------------------------------------------------ctcacccacccatccagccacccat------------tcatctacccatccagtcattcattcatctatccatccatccattcattcaccc---acacatctatccatctatccatc---------cagccacc---cctccagcca-ccatccactca----
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401216 143 -  25620257 ------------cccaccca---------------------------------------------------------cttatccatccatccatccatccat------------ccacctactcatccaaccagccatccacccacccagccagccacccatccagcc---acccatccatccagtcacccatc---------cagtcacccatcatccagtcacccatccatcca----
i aotNan1.NW_018503740v1   C 0 I 74
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948   0 - 121039945 C
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015  20 - 180051392 I

a score=76646.000000
s hg38.chr5_KI270793v1_alt     41779 30 +    126136 tccacccatctat--------ccatccatccacccacc
s panTro5.chr5             181309237 30 - 181907262 tccacccatctat--------ccatccatccacccacc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183029602 29 - 183735486 tcca-ccatctat--------ccatccatccacccaCC
i panPan2.chr5             C 0 M 1390
s gorGor5.CYUI01015805v1      116567 30 +    698298 cccacttatccat--------ccatccagccacccacc
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      243469 31 -  16742782 tccatccatccatc-------ccatccaatcacccact
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90548640 31 -  91010382 tccatccatccatc-------ccatccaatcacccact
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      140218 30 -    438239 tccatccatccat--------ccatccatccatccatc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      175856 38 -    514179 tccatccatccacccatgtatccatccatccacccatc
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203825067 30 + 204313951 accacccacctac--------ccagccagtcacccatc
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       70363 30 +    298490 cccacccatgcag--------ccacccatccatccact
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25401359 74 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I

a score=7999.000000
s hg38.chr5_KI270793v1_alt     41809 7 +    126136 cac-acat
s panTro5.chr5             181309267 7 - 181907262 cac-acat
i panTro5.chr5             C 0 C 0
s cerAty1.NW_012009470v1      243500 7 -  16742782 tat-ccat
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90548671 7 -  91010382 tat-tcat
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      140248 8 -    438239 catcccat
i manLeu1.NW_012110441v1   C 0 I 4
s colAng1.NW_012118799v1      175894 7 -    514179 cac-ccac
i colAng1.NW_012118799v1   C 0 I 4
s calJac3.chr2             203825097 7 + 204313951 cat-ccat
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       70393 7 +    298490 cac-ccat
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25401359 74 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948 0 - 121039945 C
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I
e gorGor5.CYUI01015805v1      116597 0 +    698298 C
e panPan2.chr5             183029631 1390 - 183735486 M

a score=50346.000000
s hg38.chr5_KI270793v1_alt     41816 41 +    126136 ccagccacccaaccacccacccatccatctatccacttatc----
s panTro5.chr5             181309274 41 - 181907262 ccagccacccaaccacccacccatccatctacccacttatc----
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      116597 28 +    698298 -------------cacccacccatccagcaacccatccatc----
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      243507 29 -  16742782 ------------ccatccatccatccatccacccacccatt----
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      140260 41 -    438239 tcacccacttatccatccatccatccattcacccacccatt----
i manLeu1.NW_012110441v1   I 4 C 0
s colAng1.NW_012118799v1      175905 41 -    514179 ccagccactcatccatccacccatccatccacccacttatc----
i colAng1.NW_012118799v1   I 4 C 0
s calJac3.chr2             203825104 45 + 204313951 ccaaccacttatctagccatccatccacccacccatccagtcact
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       70400 42 +    298490 ccagcca---gcccacccacccatccactcacccacccatccacc
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25401359 74 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e chlSab2.chr4              90548678  0 -  91010382 C
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=-2016.000000
s hg38.chr5_KI270793v1_alt     41857 7 +    126136 catccat
s panTro5.chr5             181309315 7 - 181907262 catccag
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      116625 7 +    698298 cccctat
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      243536 3 -  16742782 tat----
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      140301 3 -    438239 tat----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      175946 3 -    514179 cat----
i colAng1.NW_012118799v1   C 0 I 4
s calJac3.chr2             203825149 7 + 204313951 catccat
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       70442 7 +    298490 catccag
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401433 7 -  25620257 caccctt
i aotNan1.NW_018503740v1   I 74 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948 0 - 121039945 C
e chlSab2.chr4              90548678 0 -  91010382 C
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=42449.000000
s hg38.chr5_KI270793v1_alt     41864 25 +    126136 cca---gccagccagccacccacccacc
s panTro5.chr5             181309322 25 - 181907262 cca---gccagccagccacccacccacc
i panTro5.chr5             C 0 I 30
s gorGor5.CYUI01015805v1      116632 25 +    698298 cca---tccatccacctgcccacccacc
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      243539 25 -  16742782 cca---ttcacccatccacccacccacc
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      140304 25 -    438239 cca---ttcacccatccacccacccacc
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203825156 28 + 204313951 ccaccacccacccaaccactcactcacc
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       70449 26 +    298490 cca--gcccacccacccatccactcacc
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401440 25 -  25620257 cca---cccgcccaaccactcacccacc
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e chlSab2.chr4              90548678  0 -  91010382 C
e colAng1.NW_012118799v1      175949  4 -    514179 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=42477.000000
s hg38.chr5_KI270793v1_alt     41889 36 +    126136 catccagcgacccatccatccacctatccatccatc
s gorGor5.CYUI01015805v1      116657 36 +    698298 cacccagccacccacttatccatccatccatccatc
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      243564 36 -  16742782 tatccagccacccatccacccacccattcatccacc
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      140329 36 -    438239 tttccagccacccatccacccacccattcatccacc
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203825184 35 + 204313951 catccagccac-cattcatctacccatccactcatc
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       70475 29 +    298490 catccatccac-------tctacccatgcatccaac
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401465 36 -  25620257 catccagccacccattcatctacccatccactcatc
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5             181309347 30 - 181907262 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e chlSab2.chr4              90548678  0 -  91010382 C
e colAng1.NW_012118799v1      175949  4 -    514179 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=2044.000000
s hg38.chr5_KI270793v1_alt     41925 7 +    126136 cacctgc
s gorGor5.CYUI01015805v1      116693 2 +    698298 ca-----
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      243600 7 -  16742782 cacttat
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      140365 7 -    438239 cacttat
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203825219 7 + 204313951 cattcgt
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       70504 7 +    298490 cacttat
i cebCap1.NW_016108158v1   C 0 C 0
e panTro5.chr5             181309347 30 - 181907262 I
e aotNan1.NW_018503740v1    25401501 0 -  25620257 C
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948 0 - 121039945 C
e chlSab2.chr4              90548678 0 -  91010382 C
e colAng1.NW_012118799v1      175949 4 -    514179 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=221535.000000
s hg38.chr5_KI270793v1_alt     41932 278 +    126136 ccacccacccagccacccacttatccat----------------------------ccatccatccatcta------------ctcagccacccatccag-------cgacccacccatccac--------------------ccttccacc---------------catccatccacccacacatccagtcacccacttatctatcc----atccatccacccacccatccatccacc----cacccatttatccatccatccactcacccacccatccagccactcacccatccagccactca----cccatccagccacccacccatccagccacccattcacccacccatccactcatccacccaccc
s panTro5.chr5             181309377 186 - 181907262 ctatacgcagagccacccacttatccat----------------------------ccatccatccatcta------------ctcagccacccatccag-------cgacccacccatccac--------------------ccttccacc---------------catccatccacccacacatccagtcacccacttatctatcc----atccatccacccacccatccatccac------------------------------------------------------------------------------------------------ccacccatttatccatccatccactca----cccaccc
i panTro5.chr5             I 30 C 0
s gorGor5.CYUI01015805v1      116695 270 +    698298 -----------------------tccat----------------------------ccatccatccatcta------------ctcagccacccatccag-------cgacccacccatccac--------------------ccttccacccaccatccacccacacatccagccacccacacatccagccacccacttatctatcc----atccatccacccacccatccacccacc----catttatccatccatccactcacccacccacccatccagccgctcacccatccagccactca----cccatccagccaaccacccatccagccacccattcacccacccatccatccagccacccaccc
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      243607 318 -  16742782 ----------------ccatctatccatccatccacccacccacacatccagccacccatccatccaccca------------cttatccatccatccat-------ccacccacccacccatcaagtgacccattcatccacccatccatc---------------catccacccatccatccatccagccacccatccagccacccacttatccatccatccacccacccatccagtgacccatccatccacccatccagccacccacttatccatccatccatccactcatccagccacccacttttccatccatccatccacccatccagccacccatttatccatccatccatccagtcaccc----
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      140372 255 -    438239 ----------------ccatctatccat----------------------------ccatccacccaccca------------cacatccagccacccat-------ccatccacccacttat--------------------ccatccatc---------------catccacccacccacccatcaagtgacccattcatccaccc----atccatccatccacccatccatccact--------cacccacccatccagccacccacttatccatccatccacccacccatccagtgatcca----tccatccatccat---cccatccagccacccacttacccatccatccatccatccatccaccc
i manLeu1.NW_012110441v1   C 0 M 907
s calJac3.chr2             203825226 277 + 204313951 ------------ccatccatccattcac----------------------------tcacccacccatctatccatctatccgtccagccacccatccagccaccatccactcacccacccat--------------------ccagccacc---------------catccatccacccacccatccagccacccatccagccaccc----atccagcctcccatccactcacccacc------------catccacccacacatccatccacccatccactcactcacccagccaaccactca----cccatccagccacccatccatctacccacccacccatccagccagccactcgcccaccaaccc
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       70511 233 +    298490 ------------ccagccatccatccac----------------------------ccacccacccatcca-----------------ccacctacccaa-------ccactcgcccacccat--------------------ccagccacc---------------cattcat----ctacccatccagtcattcattcatctatcc----atccatccattcattcacccacacatc------------tatccatctatccatccagccacccctccagcca-----ccatccactcaccca----cccatgcagccacccatccat----ccactcacccatccagcca-------gcccacccaccc
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25401501   0 -  25620257 C
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948   0 - 121039945 C
e chlSab2.chr4              90548678   0 -  91010382 C
e colAng1.NW_012118799v1      175949   4 -    514179 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015  20 - 180051392 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=95170.000000
s hg38.chr5_KI270793v1_alt     42210 117 +    126136 atccagccac---------------ccacccaaccagccagccac---tcaccca-tccagccatccacccacccatccagccaccca-----------ttcacccaccca----tccactcatccacccacccatccagccacccaccca
s panTro5.chr5             181309563 113 - 181907262 atccagccac---------------ccaccca----tccagccac---tcaccca-tccagctatccacccacccatccagccagcca-----------ttcacccaccca----tccactcatccacccacccatccagccacccaccca
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      116965 120 +    698298 aaccagccag---------------ccactcacccatctagccatccaccaccca-tccagccacccattcacccacccagccaccca-----------ttcacccaccca----tccactcatccacccacccatccagccacccaccca
i gorGor5.CYUI01015805v1   C 0 C 0
s cerAty1.NW_012009470v1      243925 121 -  16742782 atctacccac---------------ccacccattcagccacccat---tcatcca-ccctcccactcatccatccatccatccactca-----------tccagccacccacttttccatccatccatccatccatccagtcacctaccca
i cerAty1.NW_012009470v1   C 0 I 898
s calJac3.chr2             203825503 143 + 204313951 atccagccacccatctagcctcccaccacccatccactcacccat---ccatcca-gctacccagccatctacccacccatccatccaccacccattcctccatccaccct----cccacccatccatccatccacccagccaccaaccca
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       70744 117 +    298490 atccactcac---------------ccacccatccactcacccat---ccatccactctacccatgcatccaaccacttatccagcca-----------tccatccaccca----cccacccatcca-ccacctacccaaccactcgccca
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25401501   0 -  25620257 C
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948   0 - 121039945 C
e manLeu1.NW_012110441v1      140627 907 -    438239 M
e chlSab2.chr4              90548678   0 -  91010382 C
e colAng1.NW_012118799v1      175949   4 -    514179 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015  20 - 180051392 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=8591.000000
s hg38.chr5_KI270793v1_alt     42327 13 +    126136 accagccagccac
s panTro5.chr5             181309676 13 - 181907262 accagccagccac
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117085 13 +    698298 accagccagccac
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203825646 13 + 204313951 cccacccatctac
i calJac3.chr2             C 0 I 4
s cebCap1.NW_016108158v1       70861 13 +    298490 cccatccagccac
i cebCap1.NW_016108158v1   C 0 I 8
e aotNan1.NW_018503740v1    25401501  0 -  25620257 C
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15989634 1554 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e manLeu1.NW_012110441v1      140627 907 -    438239 M
e chlSab2.chr4              90548678  0 -  91010382 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e colAng1.NW_012118799v1      175949  4 -    514179 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=57111.000000
s hg38.chr5_KI270793v1_alt     42340 72 +    126136 tcacccatccagccatctattcatccactcacccatccatccatccacccattcaaccttccagctgcccat
s panTro5.chr5             181309689 72 - 181907262 tcacccatccagccatctattcatccactcacccatccatccgtccacccattcaaccttccagctgcccat
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117098 72 +    698298 tcacccatccagccatctattcatccactcacccatccatccatccacccattcaaccttccagctgcccat
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203825663 72 + 204313951 ttacccattcatccacctgttcatccacccacccatctgtccacccacccgctcatccttctatcaacccat
i calJac3.chr2             I 4 C 0
s saiBol1.JH378155          15991188 59 +  16417988 Tcatccatccatccatctctctacccacccacccacctatccatccatc----catctctcca---------
i saiBol1.JH378155         I 1554 C 0
s cebCap1.NW_016108158v1       70882 64 +    298490 ctacccatccagtcattcattcatctatccatccatccattcattcacccacacatctatccat--------
i cebCap1.NW_016108158v1   I 8 C 0
e aotNan1.NW_018503740v1    25401501  0 -  25620257 C
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e manLeu1.NW_012110441v1      140627 907 -    438239 M
e chlSab2.chr4              90548678  0 -  91010382 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e colAng1.NW_012118799v1      175949  4 -    514179 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=11412.000000
s hg38.chr5_KI270793v1_alt     42412 26 +    126136 ttatctaccaacccaccctcctagcc
s panTro5.chr5             181309761 26 - 181907262 ttatctaccaacccaccctcctagcc
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117170 26 +    698298 ttatctaccaacccaccctcctagcc
i gorGor5.CYUI01015805v1   C 0 C 0
s cebCap1.NW_016108158v1       70946 26 +    298490 ctatccatccagccacccctccagcc
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25401501  0 -  25620257 C
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15991247  0 +  16417988 C
e calJac3.chr2             203825735  0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e manLeu1.NW_012110441v1      140627 907 -    438239 M
e chlSab2.chr4              90548678  0 -  91010382 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e colAng1.NW_012118799v1      175949  4 -    514179 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e macFas5.chr6             181227456 3998 - 181584905 M
e rheMac8.chr6             179498015 20 - 180051392 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=126408.000000
s hg38.chr5_KI270793v1_alt     42438 90 +    126136 agccagcgactcacccatct----agcaactcatccatccacccacccactcagcca-gccacccatccatctggccacccacccatccacccac
s panTro5.chr5             181309787 90 - 181907262 agccagcgactcacccatct----agcaactcatccatccacccacccactcagcca-gccacccatccatctggccacccacccatccacccac
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117196 89 +    698298 agccagccactcatccatct----agcaactcatccatccacccacccactcagcca-g-cacccatccatctggccacccacccatccacccac
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179498035 90 - 180051392 AGccagccactcacccatcc----agcgactcatccatccacccacccacccaccca-gccacccatccatctggccacccattcatccacccac
i rheMac8.chr6             I 20 C 0
s macFas5.chr6             181231454 90 - 181584905 AGccagccactcacccatcc----agcgactcatccatccatccacccacccaccca-gccacccatccatctggccacccattcatccacccac
i macFas5.chr6             M 3998 C 0
s saiBol1.JH378155          15991247 80 +  16417988 -----tccacccatccattc---------tccatccatccatccacccatccagcta-tccacccacccacccacccatccatccatccatccat
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       70972 94 +    298490 -accatccactcacccacccatgcagccacccatccatccactcacccatccagccagcccacccacccatccactcacccacccatccacccac
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25401501  0 -  25620257 C
e otoGar3.GL873745           1858449 273 -   2165740 I
e calJac3.chr2             203825735  0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e manLeu1.NW_012110441v1      140627 907 -    438239 M
e chlSab2.chr4              90548678  0 -  91010382 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e colAng1.NW_012118799v1      175949  4 -    514179 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=21578.000000
s hg38.chr5_KI270793v1_alt     42528 13 +    126136 ccattcatccacc
s panTro5.chr5             181309877 13 - 181907262 ccattcatccacc
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117285 13 +    698298 ccattcatccacc
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179498125  6 - 180051392 ccaccc-------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181231544 13 - 181584905 ccacccatccacc
i macFas5.chr6             C 0 C 0
s colAng1.NW_012118799v1      175953 13 -    514179 ccatccatccacc
i colAng1.NW_012118799v1   I 4 C 0
s saiBol1.JH378155          15991327 13 +  16417988 ccatccatccatc
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       71066 13 +    298490 ccacccatccacc
i cebCap1.NW_016108158v1   C 0 I 84
e aotNan1.NW_018503740v1    25401501  0 -  25620257 C
e otoGar3.GL873745           1858449 273 -   2165740 I
e calJac3.chr2             203825735  0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e manLeu1.NW_012110441v1      140627 907 -    438239 M
e chlSab2.chr4              90548678  0 -  91010382 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=2609.000000
s hg38.chr5_KI270793v1_alt     42541 9 +    126136 cacacacct
s panTro5.chr5             181309890 9 - 181907262 cacacacct
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117298 9 +    698298 cacacactt
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181231557 2 - 181584905 ca-------
i macFas5.chr6             C 0 C 0
s colAng1.NW_012118799v1      175966 9 -    514179 tacccaccc
i colAng1.NW_012118799v1   C 0 I 4
s saiBol1.JH378155          15991340 9 +  16417988 catccatct
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25401501 0 -  25620257 C
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       71079 84 +    298490 I
e calJac3.chr2             203825735 0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948 0 - 121039945 C
e manLeu1.NW_012110441v1      140627 907 -    438239 M
e chlSab2.chr4              90548678 0 -  91010382 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e macNem1.NW_012012389v1      225330 1241 -   1764207 I
e rheMac8.chr6             179498131 0 - 180051392 C
e panPan2.chr5             183029631 1390 - 183735486 M

a score=106334.000000
s hg38.chr5_KI270793v1_alt     42550 78 +    126136 atccagccacccatccatccacctaccaagccagccatccactcacccacccacccacccagccagccgctcattca-----t
s panTro5.chr5             181309899 78 - 181907262 atccagccacccatccatccacctaccaagccagccatccactcacccacccacccacccagccagccactcattca-----t
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117307 78 +    698298 atctagccatccatccatccacctaccaagccagccatccactcacccatccacccacccagccagccgctcattca-----t
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179498131 78 - 180051392 gtccacccatccatccacccacctagccagccagccactcacccacccactcaccccgccagtcagtcgctcattca-----t
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181231559 69 - 181584905 ---------tccatccacccacctagccagccagccactcacccacccactcaccccgccagtcagctgctcattca-----t
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      226571 71 -   1764207 ------------atccatccacccatccagtcacccacccatccatccatccacccacccactcacccactcaaccaaccact
i macNem1.NW_012012389v1   I 1241 C 0
s colAng1.NW_012118799v1      175979 78 -    514179 acccacccatccatccacccacctagccagccagccactcacccccccccccacccccccagtcagctgcccattca-----t
i colAng1.NW_012118799v1   I 4 C 0
s saiBol1.JH378155          15991349 51 +  16417988 ----------------ctccaaccacccagccacccacccatccatccagtcacccatccatccaac----------------
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25401501  0 -  25620257 C
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       71079 84 +    298490 I
e calJac3.chr2             203825735  0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e manLeu1.NW_012110441v1      140627 907 -    438239 M
e chlSab2.chr4              90548678  0 -  91010382 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=3600.000000
s hg38.chr5_KI270793v1_alt     42628 1 +    126136 c
s panTro5.chr5             181309977 1 - 181907262 c
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117385 1 +    698298 c
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179498209 1 - 180051392 c
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181231628 1 - 181584905 c
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      226642 1 -   1764207 c
i macNem1.NW_012012389v1   C 0 C 0
s colAng1.NW_012118799v1      176057 1 -    514179 c
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15991400 1 +  16417988 c
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25401501 1 -  25620257 c
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       71079 84 +    298490 I
e calJac3.chr2             203825735 0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948 0 - 121039945 C
e manLeu1.NW_012110441v1      140627 907 -    438239 M
e chlSab2.chr4              90548678 0 -  91010382 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=234664.000000
s hg38.chr5_KI270793v1_alt     42629  92 +    126136 atccatccacccatccatccactcacccacccatttatctatccat----------------ccagccagccacccatccacccacccac------------ttacccactcaaccaact
s panTro5.chr5             181309978  92 - 181907262 atccatccacccatccatccactcacccacccatttatctatccat----------------ccagccagccacccatccacccacccac------------ttacccactcaaccaact
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117386  92 +    698298 atccatccacccatccatccactcacccacccatttatctatccat----------------ccatccagccacccatccacccacccac------------ttacccactcaaccaact
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179498210 108 - 180051392 atccatccatccatccactcacccacccatttatctatccatctatccacccatccagtcacccacccatccatccatccacccacccac------------tcacccactcaaccaacc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181231629 108 - 181584905 atccatccatccatccactcacccacccatttatctatccatccatccacccatccagtcacccacccatccatccatccacccacccac------------tcacccactcaaccaacc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      226643  96 -   1764207 acccatccatccacccatccacccacctagccacccacccatccgtccacccatccactcacccacccagccaaccatccacccatccat------------ccac------------cc
i macNem1.NW_012012389v1   C 0 C 0
s colAng1.NW_012118799v1      176058 108 -    514179 atccatccatccatccactcacccacccatttatctattcatccatccacccatccagtcacccacccatccatccatccacccaccccc------------tcacccactcaaccaacc
i colAng1.NW_012118799v1   C 0 I 1
s saiBol1.JH378155          15991401 104 +  16417988 acttatccagccgtccatctacctgcccatccaggcatccaaccat----------------ccagccatccacccattcatccatccacccatttatccagccacccactcatccttcc
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       71163  93 +    298490 attcatccatccatccattcactcacccgcccatctatccacctat----------------ccatccagccacccatccagcctcccctc-----------ccattcacccacacatcc
i cebCap1.NW_016108158v1   I 84 C 0
s aotNan1.NW_018503740v1    25401502  87 -  25620257 atccatccatccatccactcacttacctacccatctatccatctat----------------ccatccagccacccatacagcca-----------------ccatccactcacccaccc
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e calJac3.chr2             203825735   0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948   0 - 121039945 C
e manLeu1.NW_012110441v1      140627 907 -    438239 M
e chlSab2.chr4              90548678   0 -  91010382 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=149371.000000
s hg38.chr5_KI270793v1_alt     42721 38 +    126136 actcacccatccagccaccc-atccatccacccacccac
s panTro5.chr5             181310070 38 - 181907262 actcacccatccagccaccc-atccatccacccacccac
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117478 38 +    698298 actcacccatccagccaccc-atgcatccacccacccac
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179498318 38 - 180051392 actcacccatccatccaccc-atccacccacccagccac
i rheMac8.chr6             C 0 I 4
s macFas5.chr6             181231737 38 - 181584905 actcacccatccatccaccc-atccacccacccagccac
i macFas5.chr6             C 0 I 4
s macNem1.NW_012012389v1      226739 38 -   1764207 actcacccatccatccaccc-atccacccactcagccac
i macNem1.NW_012012389v1   C 0 I 4
s manLeu1.NW_012110441v1      141536 38 -    438239 actcacccatccatccaccc-atccacccacccagccac
i manLeu1.NW_012110441v1   M 907 I 4
s colAng1.NW_012118799v1      176167 38 -    514179 actcacccatccatccaccc-atctacccacccagccac
i colAng1.NW_012118799v1   I 1 I 4
s saiBol1.JH378155          15991505 39 +  16417988 agccacccatccatccaccctacccatccatccaaccac
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       71256 38 +    298490 atccacccatcaactcactc-acccagccaaccactcac
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401589 38 -  25620257 atccagccacccatccactc-acccacccatccacccac
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e calJac3.chr2             203825735  0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e chlSab2.chr4              90548678  0 -  91010382 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=349027.000000
s hg38.chr5_KI270793v1_alt     42759  89 +    126136 ccatccgtccacccatccactcacccaccca-------gccaaccacccaccc--------------------agccacccatccatccacccacccactcacccacccatcca----------------tc
s panTro5.chr5             181310108 105 - 181907262 ccatccgtccacccatccactcacccaccca-------gccaaccacccaccc--------------------agccacccatccatccacccacccactcacccacccatccagcgactcacccacccatc
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117516  87 +    698298 ccatccgt-cacccatccactcacccaccca-------gccaacca-ccaccc--------------------agccacccacccacccatccagcgactcacccacccatcca----------------tc
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179498360  93 - 180051392 ccatccgtccacccatccactcacccaccca-------gccaaccatccaccc--------------------atccatccacccaccaacccatccactcacccactcaccca------------cccatc
i rheMac8.chr6             I 4 I 16
s macFas5.chr6             181231779  93 - 181584905 ccatccgtccacccatccactcacccaccca-------gccaaccatccaccc--------------------atccatccacccaccaacccatccactcacccactcaccca------------cccatc
i macFas5.chr6             I 4 I 16
s macNem1.NW_012012389v1      226781  93 -   1764207 ccatccgtccacccatccactcacccaccca-------gccaaccatccaccc--------------------atccatccacccaccaacccatccactcacccactcaccca------------cccatc
i macNem1.NW_012012389v1   I 4 I 16
s chlSab2.chr4              90548678  73 -  91010382 ccatccatccatccacccact---------------------------caccc--------------------atccatccacccacccacccatccactcacccactcaccca------------cccatc
i chlSab2.chr4             C 0 I 16
s manLeu1.NW_012110441v1      141578  93 -    438239 ccatccgtccacccatccactcacccaccta-------gccaaccatccaccc--------------------atccatccacccacccacccatccactcacccactcaccca------------cccatc
i manLeu1.NW_012110441v1   I 4 I 16
s colAng1.NW_012118799v1      176209 113 -    514179 ctatccgtccatgcatccactcacccaccca-------gccaaccacccacccatccatccacccactcacctatccatccacccacccacccatccactcacccactcaccca------------cccatc
i colAng1.NW_012118799v1   I 4 I 16
s saiBol1.JH378155          15991544  99 +  16417988 ttatccagccatccatccacccacccatccagtaactcatcctccagtcactc--------------------atccatcca-ccacccacccaaccactcatccacccatcta------------gccacc
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       71294  85 +    298490 ctgtccagccacccatccatctacccaccca-------cccctccacacaccc--------------------ac--------tcacccacccacccatccagccagccatcta------------gccacc
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401627  89 -  25620257 acatccatccacccatccactcactcaccca-------gccaaccactcacct--------------------gtccag----ccacccatccatctacccacccacccatcca------------tccacc
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e calJac3.chr2             203825735   0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948   0 - 121039945 C
e cerAty1.NW_012009470v1      244046 898 -  16742782 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=45828.000000
s hg38.chr5_KI270793v1_alt     42848 11 +    126136 caccc----gcccac
s panTro5.chr5             181310213 15 - 181907262 cacccacctgcccac
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117603 11 +    698298 cacct----gcccac
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179498469 11 - 180051392 cacct----gcccac
i rheMac8.chr6             I 16 C 0
s macFas5.chr6             181231888 11 - 181584905 cacct----gcccac
i macFas5.chr6             I 16 C 0
s macNem1.NW_012012389v1      226890 11 -   1764207 cacct----gcccac
i macNem1.NW_012012389v1   I 16 C 0
s cerAty1.NW_012009470v1      244944 11 -  16742782 cacct----gcccac
i cerAty1.NW_012009470v1   I 898 C 0
s chlSab2.chr4              90548767 11 -  91010382 tacct----gcccac
i chlSab2.chr4             I 16 C 0
s manLeu1.NW_012110441v1      141687 11 -    438239 cacct----gcccac
i manLeu1.NW_012110441v1   I 16 C 0
s colAng1.NW_012118799v1      176338 11 -    514179 cacct----gcccac
i colAng1.NW_012118799v1   I 16 C 0
s saiBol1.JH378155          15991643 11 +  16417988 cattc----atctac
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       71379  6 +    298490 ca---------ccac
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401716 11 -  25620257 cactc----acccac
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e calJac3.chr2             203825735  0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120542948  0 - 121039945 C
e panPan2.chr5             183029631 1390 - 183735486 M

a score=26481.000000
s hg38.chr5_KI270793v1_alt     42859 3 +    126136 cca
s panTro5.chr5             181310228 3 - 181907262 cca
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117614 3 +    698298 cca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542948 3 - 121039945 cca
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179498480 3 - 180051392 cca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181231899 3 - 181584905 cca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      226901 3 -   1764207 cca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      244955 3 -  16742782 cca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90548778 3 -  91010382 cca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      141698 3 -    438239 cca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      176349 3 -    514179 cca
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15991654 3 +  16417988 cca
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       71385 3 +    298490 cca
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401727 3 -  25620257 cca
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e calJac3.chr2             203825735 0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e panPan2.chr5             183029631 1390 - 183735486 M

a score=1979911.000000
s hg38.chr5_KI270793v1_alt     42862 276 +    126136 tccactcacccatccatccagctacccagccatctacccacccatccatccacccacccattcttccatccacccagccactcaacc----acccatccagccaccaacccacccacccatctactcgctcacccatttatccacccattta----tccaaccatccatccacccacccattcatccatttatcaacccatcc------------------attcatctacccacccacccatttattcattcattcat----------tcatccatccatcatccatgcaatccatgcattcattatccac
s panTro5.chr5             181310231 276 - 181907262 tccactcacccatccatccagctacccagccatctacccacccatccatccacccacccattcttccatccacccagccactcaacc----acccatccagccaccaacccacccacccatctactcgctcacccatttatccacccattta----tccaaccatccatccacccacccattcatccatttatcaacccatcc------------------attcatctacccacccacccatttattcattcattcat----------tcatccatccatcatccatgcaatccatgcattcattatccac
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183031021 276 - 183735486 Tccactcacccatccatccagctacccagccatctacccaaccatccatccacccacccattcttccatccacccagccactcaacc----acccatccagccaccaacccacccacccatctactcgctcacccatttatccacccattta----tccaaccatccatccacccacccattcatccatttatcaacccatcc------------------attcatctacccacccacccatttattcattcattcat----------tcatccatccatcatccatgcaatccatgcattcattatccac
i panPan2.chr5             M 1390 C 0
s gorGor5.CYUI01015805v1      117617 265 +    698298 tccactcacccatccatccagctacccagccatctac----ccatccatccacacacccattcttccatccacccagccactcaacc----acccatccagccaccaacccacccacccatctactcgctcacccatttatccacccattta----tccaaccatccatccacccacccattcatccatttatcaacccatcc---------------------catctacccacccaccc----attcattcattcat----------tcatccatccatcatccatgcaatccatgcattaattatccac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120542951 291 - 121039945 tccactcacccatccatctagctacccagccatctacccacccatccatccacccacccattcctccatccacccagccactcatcc----acccatccagccaccaacccacccacccatccactcgctcacccatttatccacccattta----tccaaccatccatccacccacccattcatccattcacccacccattcatccatttatcacccttcattcatctacccacccacccat---tttattcattcat----------tcatccatccttcatccatgcaatcaatgctttcattatccac
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179498483 273 - 180051392 tccactcacccatccatccagctacccagccatctac------------ccacccacccattcttccatccacccagccactcaacc----actcatccagccaccaacccacccacccatctacccgctcacccatttatccacccattta-----cctaccatccatccatccacccattcatccatttatcaacccatcc------------------attcatctacccacccacccatttattcattcattcatcatccatccatcatccatccatcatccatgcaatccatgcatccattatccac
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181231902 273 - 181584905 tccactcacccatccatccagctacccagccatctac------------ccacccacccattcttccatccacccagccactcaacc----actcatccagccaccaacccacccacccatctacccgctcacccatttatccacccattta-----cctaccatccatccatccacccattcatccatttatcaacccatcc------------------attcatctacccacccacccatttattcattcattcatcatccatccatcatccatccatcatccatgcaatccatgcatccattatccac
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      226904 273 -   1764207 tccactcacccatccatccagctacccagccatctac------------ccacccacccattcttccatccacccagccactcaacc----actcatccagccaccaacccacccacccatctacccgctcacccatttatccacccattta-----cctaccatccatccatccacccattcatccatttatcaacccatcc------------------attcatctacccacccacccatttattcattcattcatcatccatccatcatccatccatcatccatgcaatccatgcatccattatccac
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      244958 273 -  16742782 tccactcacccatccatccagctacccagccatctac------------ccacccacccattcttccatctacccagccactcaacc----actcatccagccaccaacccacccacccatctaccctctcacccatttatccacccattta-----cctaccatccatccacccacccattcatccatttatcaacccatcc------------------attcatctacccacccacccatttattcattcattcatcatccatccatcatccatccatcatccatgcaatccatgcatccattatccag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90548781 273 -  91010382 tccactcacccatccatgcagctacccagccatctac------------ccacccacccattcttccatccacccagccactcagcc----actcatccagccaccaacccacccacccatctacccgctcacccatttatccacccattta-----cctaccatccatccacctacccattcatccatttatcaacccatcc------------------attcatctacccacccacccatttattcattcattcatcatccatccatcacccatccatcatccatgcaatccatgcatccattatccac
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      141701 273 -    438239 tccactcacccatccatccagctacccagccatctac------------ccacccacccattcttccatctacccagccactcaacc----actcatccagccaccaacccacccacccatctacctgctcaccaatttatccacccattta-----cctaccatccatccacccacccattcatccatttatcaacccatcc------------------attcatctacccacccacccatttattcattcattcatcatccatccatcatccatccatcatccatgcaatccgtgcatccattatccac
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      176352 251 -    514179 tccattcacccatccatccagctacccagccatctac------------ccacccacccattcttccatccacccagccactcaacc----acccatccaaccaccaacccacccacccatctacccactcacccacttatccac----------------ccatccatccacccacccattcatccatttatcaacccatcc------------------attcatctacccacccacccatttattcattcattcatcat-----------ccatccatcatccatgcaatccttgcatccattatccac
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15991657 256 +  16417988 tccacgcatccatccatccatccatccactcatccat------------tcttccatccatccattcacttacccacccatctatccatctatccacccagccaccaacccatccacccatctacccacttacccattcatccacccattcatccacccacccatctgtccacccacccactcatccgtctatcaacccatcc------------------atttatctatccacccacccatttactcactcatttat----------tcatgcagctatc----------------catccattatccac
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       71388 239 +    298490 tccactcacccatccatccacctacccagccatctac------------ccacccatccatccatccac-cacccattcccccatccaccctcccacccagccaccaacccacccacccatctacccacttacccattcatccacctgttca----------------tgcacccatccactcatccatctatcaacctatcc------------------attcatctatccacccacccatttactcattcatttat----------tcatgcatctatc----------------catccattatccac
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401730 252 -  25620257 cccagccagccacccatctagctaccca-ccacccat------------ccactcacccatccatccagctacccagccatctaccc-cccatccatcca-ccacccattcctccatccaccctcccacccatccatccatccaccctttcatctacccacccatctgtccacccacccactcatccatctatcaacccatcc------------------attcacctatccaccc-cccatttcctcattcacttat----------tcacgcatctatg----------------catccattatccac
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e calJac3.chr2             203825735   0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I

a score=7754952.000000
s hg38.chr5_KI270793v1_alt     43138 848 +    126136  
s panTro5.chr5             181310507 848 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183031297 848 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      117882 850 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120543242 834 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179498756 840 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181232175 840 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      227177 840 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      245231 840 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90549054 840 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      141974 840 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      176603 848 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203825735 848 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15991913 831 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       71627 829 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25401982 842 -  25620257  
i aotNan1.NW_018503740v1   C 0 I 803
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=20055.000000
s hg38.chr5_KI270793v1_alt     43986 2 +    126136 TG
s panTro5.chr5             181311355 2 - 181907262 TG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032145 2 - 183735486 TG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      118732 2 +    698298 TG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544076 2 - 121039945 TG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179499596 2 - 180051392 TG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181233015 2 - 181584905 TG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228017 2 -   1764207 TG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      246071 2 -  16742782 TG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90549894 2 -  91010382 TG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      142814 2 -    438239 TG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      177451 2 -    514179 TG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203826583 2 + 204313951 TG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15992744 2 +  16417988 TG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       72456 2 +    298490 TG
i cebCap1.NW_016108158v1   C 0 I 817
e aotNan1.NW_018503740v1    25402824 803 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=108567.000000
s hg38.chr5_KI270793v1_alt     43988 16 +    126136 TGGTGGTGGCCAGCCC
s panTro5.chr5             181311357 16 - 181907262 CGGTGGTGGCCAGCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032147 16 - 183735486 CGGTGGTGGCCAGCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      118734 16 +    698298 CGGTGGTGGCCAGCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544078 16 - 121039945 CGGTGGTGGCCAGCTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179499598 16 - 180051392 CAGTCGTGGCCAGCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181233017 16 - 181584905 CAGTCGTGGCCAGCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228019 16 -   1764207 CAGTCGTGGCCAGCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      246073 16 -  16742782 CGGTGGTGGCCAGCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90549896 16 -  91010382 CAGTGGTGGCCAGCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      142816 16 -    438239 CGGTGGTGGCCAGCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      177453 16 -    514179 CGGTGGTGGCCAGCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203826585 16 + 204313951 CAGTGGCGGCCGGCCC
i calJac3.chr2             C 0 I 675
s saiBol1.JH378155          15992746 15 +  16417988 CAGTGGCGGCTGGCC-
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25402824 803 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=-1713.000000
s hg38.chr5_KI270793v1_alt     44004 1 +    126136 T
s panTro5.chr5             181311373 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032163 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      118750 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544094 1 - 121039945 T
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179499614 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181233033 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228035 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      246089 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90549912 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      142832 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      177469 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827276 1 + 204313951 G
i calJac3.chr2             I 675 C 0
s saiBol1.JH378155          15992761 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25402824 803 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=175277.000000
s hg38.chr5_KI270793v1_alt     44005 24 +    126136 GGCTCTCTGCGGTCAACGTGCAGC
s panTro5.chr5             181311374 24 - 181907262 GGCTCTCTGTGGTCAACGTGCAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032164 24 - 183735486 GGCTCTCTGCGGTCAATGTGCAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      118751 24 +    698298 GGGTCTCTGCGGTCAACGTGCAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544095 24 - 121039945 GGCTCTCTGCGGTCAACGTGCAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179499615 24 - 180051392 GGCTTTTGGTGGTCAATGTGCAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181233034 24 - 181584905 GGCTTTTGGTGGTCAACGTGCAGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228036 24 -   1764207 GGCTTTTGGTGGTCAACGTGCAGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      246090 24 -  16742782 GGCTTTTGGTGGTCAACGTGCAGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90549913 24 -  91010382 GGCTTTTGGTGGGCAACGTGCAGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      142833 24 -    438239 GGTTTTTGGTGGTCAACGTGCCGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      177470 22 -    514179 GGCTCTC--TGGTCAACGTGCAGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827277 24 + 204313951 GGCTCTCTGTGGTCCACATGCAGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15992762 24 +  16417988 GGCTCTCTGTGGCCCACGTGCGGC
i saiBol1.JH378155         C 0 I 564
s aotNan1.NW_018503740v1    25403627 24 -  25620257 GGCTCTCTGTGGTCCGCATGCAGC
i aotNan1.NW_018503740v1   I 803 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=189170.000000
s hg38.chr5_KI270793v1_alt     44029 28 +    126136 CTTGCAGATGGTGGGGAAGTGCAGAAGG
s panTro5.chr5             181311398 28 - 181907262 CTTGCAGATGGTGGGGAAGTGCAGAAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032188 28 - 183735486 CTTGCAGATGGTGGGGAAGTGCAGAAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      118775 28 +    698298 CTTGCAGATGGTGGGGAAGTGCAGAAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544119 28 - 121039945 CTTGTGGATGGTGGGAAACTGCAGAAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179499639 28 - 180051392 CCTGCCGATGGTGGGAAACTGCAGAAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181233058 28 - 181584905 CCTGCCGATGGTGGGAAACTGCAGAAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228060 28 -   1764207 CCTGCCGATGGTGGGAAACTGCAGAAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      246114 28 -  16742782 CCTGCCGATGGAGGGAAACTGCAGAAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90549937 28 -  91010382 CTTGCTGAAGGTGGGAAACTGCAGAAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      142857 28 -    438239 CCTGCCAATGGTGGGAAACTGCAGAAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      177492 28 -    514179 CTTGCCAATGGTGGGAAACTGCAGAAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827301 28 + 204313951 CTGGGGAATGGTGGGAAAGTGCAGAAGG
i calJac3.chr2             C 0 I 193
s aotNan1.NW_018503740v1    25403651 28 -  25620257 CTGGGGGATGGTGGGAAAGTGCAGAAGG
i aotNan1.NW_018503740v1   C 0 I 195
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=639356.000000
s hg38.chr5_KI270793v1_alt     44057 125 +    126136 TAGtgagtagtgaagctgcctgggcttctgggttgggttggggacttggagaacttttctgtctagctaaaggattgtaaatgcactaatcagctctctgtgtctagctaaaggtttgtaaatgc
s panTro5.chr5             181311426 125 - 181907262 TAGtgagtagtgaagctgcctgggcttctgggttggggtggggacttggagaacttttctgtctagctaaaggattgtaaatgcactaatcagctctctgtgtctagctaaaggtttgtaaatgc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032216 125 - 183735486 TAGtgagtagtgaagctgcctgggcttctgggttggggtggggacttggagaacttttctgtctagctaaaggattgtaaatgcactaatcagctctctgtgtctagctaaaggtttgtaaatgc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      118803 125 +    698298 TAGtgagtagtgaagctgcctgggcttctgggttggcgtggggacttggagaacttttctgtctagctaaaggattgtaaatgcaccaatcagctctctgtgtctggctaaaggtttgtaaatgc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544147 124 - 121039945 TAGtgagtggtgaagccgcgtgggcttctgggttag-gtggggacttggagaactcttctgtcttgctaaaggattgtaaatgcaccaatcagtgctctgtgtctagctaaaggtttgtaaatgc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179499667 124 - 180051392 TTGtgagaggtgaaccgggctgggcttctggatcag-gtggggacttggagaacctttctgtccagctaaaggattgtaaatgcaccaatcagcactctgcatctagctaaagatttgtaaacgg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181233086 124 - 181584905 TTgtgagaggtgaaccgggctgggcttctggatcag-gtggggacttggagaacctttctgtccagctaaaggattgtaaatgcaccaatcagcactctgcatctagctaaagatttgtaaacgg
i macFas5.chr6             C 0 I 737
s macNem1.NW_012012389v1      228088 124 -   1764207 TTGtgagaggtgaaccgggctgggcttctggatcag-gtggggacttggagaacctttctgtccagctaaaggattgtaaatgcaccaatcagcactctgcatctagctaaagatttgtaaacgg
i macNem1.NW_012012389v1   C 0 I 50
s cerAty1.NW_012009470v1      246142 124 -  16742782 TAGtgagaggtgaaccgggctgggcttctggatcag-gtggggacttagagaacctttctgtccagctaaaggattgtaaatgcaccaatcagcactctgcatctagctaaaggtttgtaaacgg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90549965 124 -  91010382 TAGTGAGAggtgaacccggctgggcttctggatcag-gtggagacttggagaacctttctgtccagctaaaggattgtaaatgcaccaatcagcactctgcatctagctaaagatttgtaaacgg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      142885 122 -    438239 TAGtgagaggtgaaccgggctgggcttctggatcag-gtggggacttggagaacctttctgtccagctacaggattgtaaatgcaccaatcagca--ctgcatctagctaaagatttgtaaacgg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      177520 124 -    514179 TAGtgagaggtgaacctggctgggcttgtgggtcag-gtggggacttggagaacctttctgtccagctaaaggattgtaaatgcaccaatcagcactctgcatctagctaaaggtttgtaaacgg
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=197088.000000
s hg38.chr5_KI270793v1_alt     44182 45 +    126136 accaattagc-------------------------------------------------actctgt-aaaatggacca------------------------atcagcactctgt-aaaa
s panTro5.chr5             181311551 45 - 181907262 accaattagc-------------------------------------------------actctgt-aaaacggacca------------------------atcagcactctgt-aaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032341 45 - 183735486 accaattagc-------------------------------------------------actctgt-aaaacggacca------------------------atcagcactctgt-aaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      118928 94 +    698298 accaattagcactctgtaaaaacggaccaatcagcactctgtaaaatggaccaatcagtactctgt-aaaacagacca------------------------atcagcactctgt-aaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544271 93 - 121039945 accaattagc-------------------------actctgtaaaacggaccaatcagcactctgt-aaaatggaccaatcagcgctatgtaaaacagaccaatcagcactctgt-aaaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179499791 47 - 180051392 accagtcagc-------------------------------------------------actctgtaaaaatggacca------------------------atcagcactctgtaaaaa
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181233947 45 - 181584905 accaatcagc-------------------------------------------------actctgt-aaaatggaaca------------------------atcagcactctgt-aaaa
i macFas5.chr6             I 737 C 0
s macNem1.NW_012012389v1      228262 45 -   1764207 accaatcagc-------------------------------------------------actctgt-aaaactgacca------------------------atcagcactctgt-aaaa
i macNem1.NW_012012389v1   I 50 C 0
s cerAty1.NW_012009470v1      246266 47 -  16742782 accagtcagc-------------------------------------------------actctgtaaaaacggacca------------------------atcagcactctgtaaaaa
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90550089 46 -  91010382 accagtcagc-------------------------------------------------actctgtaaaaacggacca------------------------atcagcactctgt-aaaa
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      143007 46 -    438239 accagtcagc-------------------------------------------------actctgtaaaaacggacca------------------------atcagcactctgt-aaaa
i manLeu1.NW_012110441v1   C 0 I 1015
s colAng1.NW_012118799v1      177644 46 -    514179 accagtcagc-------------------------------------------------actctgtaaaaacggacca------------------------gtcagcactctgt-aaaa
i colAng1.NW_012118799v1   C 0 I 506
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=43757.000000
s hg38.chr5_KI270793v1_alt     44227 12 +    126136 tggaccaatcag
s panTro5.chr5             181311596 12 - 181907262 tggacccatcag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032386 12 - 183735486 tggaccaatcag
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119022 12 +    698298 tggaccaatcag
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544364 12 - 121039945 tggaccaatcag
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179499838 12 - 180051392 cggaccaatcag
i rheMac8.chr6             C 0 I 1754
s macFas5.chr6             181233992 12 - 181584905 tggaacaatcag
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228307 12 -   1764207 tggaacaatcag
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      246313 12 -  16742782 cggaccaatcag
i cerAty1.NW_012009470v1   C 0 I 700
s chlSab2.chr4              90550136 12 -  91010382 cggaccaatcag
i chlSab2.chr4             I 1 I 683
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      143053 1015 -    438239 I
e colAng1.NW_012118799v1      177690 506 -    514179 I

a score=76568.000000
s hg38.chr5_KI270793v1_alt     44239 46 +    126136 taggatgtgggtgggtccaaataagggaataaaagctggccaccag
s panTro5.chr5             181311608 46 - 181907262 taggatgtgggtggggccaaataagggaataaaagctggccaccag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032398 46 - 183735486 taggatgtgggtggggccaaataagggaataaaagctggccaccag
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119034 46 +    698298 taggatgtgggtggggccaaataagggaataaaagctggccaccag
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544376 46 - 121039945 tcggatgtgggtggggccaaataagggaataaaagctggccaccag
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181234004 46 - 181584905 caggatgtgcctgaggccaaataagggaataacatctggccacctg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228319 46 -   1764207 caggatgtgcctgaggccaaataagggaataacatctggccacctg
i macNem1.NW_012012389v1   C 0 I 48
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      143053 1015 -    438239 I
e chlSab2.chr4              90550148 683 -  91010382 I
e cerAty1.NW_012009470v1      246325 700 -  16742782 I
e colAng1.NW_012118799v1      177690 506 -    514179 I
e rheMac8.chr6             179499850 1754 - 180051392 I

a score=1500.000000
s hg38.chr5_KI270793v1_alt     44285 1 +    126136 c
s panTro5.chr5             181311654 1 - 181907262 c
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032444 1 - 183735486 c
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119080 1 +    698298 c
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544422 1 - 121039945 c
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181234050 1 - 181584905 c
i macFas5.chr6             C 0 I 37
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      143053 1015 -    438239 I
e chlSab2.chr4              90550148 683 -  91010382 I
e cerAty1.NW_012009470v1      246325 700 -  16742782 I
e colAng1.NW_012118799v1      177690 506 -    514179 I
e macNem1.NW_012012389v1      228365 48 -   1764207 I
e rheMac8.chr6             179499850 1754 - 180051392 I

a score=25444.000000
s hg38.chr5_KI270793v1_alt     44286 43 +    126136 ctagtcagtggcaacctgtgctggtacgagtctgtacctgggc
s panTro5.chr5             181311655 43 - 181907262 ctcgtcagcggcaacctgtgctggtacgagtctgtacctgggc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032445 43 - 183735486 ctcgtcagccgcaacctgtgctggtacgagtctgtacctgggc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119081 43 +    698298 gtcatcagtggtaacctatgctggtacgattctgtaccttggt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544423 43 - 121039945 atcggcagcagtaacctgtgctgctaccgttttttgctttagg
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      143053 1015 -    438239 I
e chlSab2.chr4              90550148 683 -  91010382 I
e cerAty1.NW_012009470v1      246325 700 -  16742782 I
e colAng1.NW_012118799v1      177690 506 -    514179 I
e macNem1.NW_012012389v1      228365 48 -   1764207 I
e macFas5.chr6             181234051 37 - 181584905 I
e rheMac8.chr6             179499850 1754 - 180051392 I

a score=11025.000000
s hg38.chr5_KI270793v1_alt     44329 11 +    126136 agcattgttct
s panTro5.chr5             181311698 11 - 181907262 agcattgttct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032488 11 - 183735486 agcattgttct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119124 11 +    698298 ggtattgttct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544466 11 - 121039945 agcattgatgt
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181234088 11 - 181584905 agctttgttct
i macFas5.chr6             I 37 C 0
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      143053 1015 -    438239 I
e chlSab2.chr4              90550148 683 -  91010382 I
e cerAty1.NW_012009470v1      246325 700 -  16742782 I
e colAng1.NW_012118799v1      177690 506 -    514179 I
e macNem1.NW_012012389v1      228365 48 -   1764207 I
e rheMac8.chr6             179499850 1754 - 180051392 I

a score=212096.000000
s hg38.chr5_KI270793v1_alt     44340 130 +    126136 tttgctctttgcaataaatcttgctggtgctcactgtttgagtctgcactacctttatgagctgtatcactca-ccgtgaaggtctgcagcttcactcctgaagccaacgagaccacgaatccacc--aggaa
s panTro5.chr5             181311709 130 - 181907262 ttcgctctttgcaataaatcttgctggtgctcactgtttgagtctgcactacctttatgagctgtatcactca-ccgtgaaggtctgcagcttcactcctgaagccaacgagaccacgaatccacc--aggaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032499 130 - 183735486 ttcgctctttgcaataaatcttgctggtgctccctgtttgagtctgcactacctttatgagctgtatcactca-ccgtgaaggtctgcagcttcactcctgaagccaacgagaccacgaatccacc--aggaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119135 130 +    698298 tttgctctttgcaataaatcttgctggcactcactgtttgagtctgcattacctttatgagctgtatcaccca-ccatgaaggtctgcagcttcactcctgaagccagcgagaccacgaatccacc--atgaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544477 131 - 121039945 ttcactcttggcaataaatcttgcccgtgctcactctttgagtctgcattatctttatgagctgtatcactcaggcgtgaaggtctgcagctccactcctgaagccaacgagaccacgaatccacc--aggaa
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181234099 131 - 181584905 -ttggtcttggcagtaagtcttgctgctgctcactctttgggtccgcactacctttatgagctgtatcactca-cagtgaaggtctgcaggctcactgctgaagctagcgagaccacgaacccaccggaggaa
i macFas5.chr6             C 0 I 28
s macNem1.NW_012012389v1      228413 132 -   1764207 tttggtcttggcagtaagtcttgctgctgctcactctttgggtccgcactacctttatgagctgtatcactca-cagtgaaggtctgcaggctcactgctgaagctagcgagaccacgaacccaccggaggaa
i macNem1.NW_012012389v1   I 48 I 46
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      143053 1015 -    438239 I
e chlSab2.chr4              90550148 683 -  91010382 I
e cerAty1.NW_012009470v1      246325 700 -  16742782 I
e colAng1.NW_012118799v1      177690 506 -    514179 I
e rheMac8.chr6             179499850 1754 - 180051392 I

a score=7195.000000
s hg38.chr5_KI270793v1_alt     44470 6 +    126136 gaatga
s panTro5.chr5             181311839 6 - 181907262 gaatga
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032629 6 - 183735486 gaatga
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119265 6 +    698298 gaatga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544608 6 - 121039945 gaatga
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181234258 6 - 181584905 gaacaa
i macFas5.chr6             I 28 I 12
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      143053 1015 -    438239 I
e chlSab2.chr4              90550148 683 -  91010382 I
e cerAty1.NW_012009470v1      246325 700 -  16742782 I
e colAng1.NW_012118799v1      177690 506 -    514179 I
e macNem1.NW_012012389v1      228545 46 -   1764207 I
e rheMac8.chr6             179499850 1754 - 180051392 I

a score=7343.000000
s hg38.chr5_KI270793v1_alt     44476 4 +    126136 gcat
s panTro5.chr5             181311845 4 - 181907262 gcat
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032635 4 - 183735486 gcat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119271 4 +    698298 gcat
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544614 4 - 121039945 gcac
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181234276 4 - 181584905 gcgc
i macFas5.chr6             I 12 C 0
s macNem1.NW_012012389v1      228591 4 -   1764207 gcgc
i macNem1.NW_012012389v1   I 46 C 0
s manLeu1.NW_012110441v1      144068 4 -    438239 gcac
i manLeu1.NW_012110441v1   I 1015 C 0
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e chlSab2.chr4              90550148 683 -  91010382 I
e cerAty1.NW_012009470v1      246325 700 -  16742782 I
e colAng1.NW_012118799v1      177690 506 -    514179 I
e rheMac8.chr6             179499850 1754 - 180051392 I

a score=230923.000000
s hg38.chr5_KI270793v1_alt     44480 88 +    126136 cacctttaagagatg-taacactcactgtgaaggtctgtggcttcgctcctgaagtcagtgagactgctaacccaccggaaagaaaaaa
s panTro5.chr5             181311849 84 - 181907262 cacctttaagagatg-taacact----gcgaaggtctgtggcttcgctcctgaagtcagtgagactgctaacccaccggaaagaaaaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032639 88 - 183735486 cacgtttaagagatg-taacactcactgtgaaggtctgtggcttcgctcctgaagtcagtgagactgctaacccaccggaaagaaaaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119275 87 +    698298 cacctttaagagatg-taacactcactgtgaaggtctgtggctttgctcctgaagtcagtgagactgctaacccacc-gaaagaaaaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544618 89 - 121039945 cacctttaagagatgttaacactcactgcaaaggtctgtggcttcactcctgaagtcagtgagactgcgaacccaccggaaaggaaaaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179501604 84 - 180051392 cacctttaagagctg-taacact----gacaaggtctgtagcttcactcctgaagtcagcgagaccacgaacccaccagaaagaagaaa
i rheMac8.chr6             I 1754 C 0
s macFas5.chr6             181234280 84 - 181584905 cacctttaagagctg-taacact----gacaaggtctgtagcttcactcctgaagtcagcgagaccacgaacccaccagaaagaagaaa
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228595 84 -   1764207 cacctttaagagctg-taacact----gacaaggtctgtagcttcactcctgaagtcagcgagaccacgaacccaccagaaagaagaaa
i macNem1.NW_012012389v1   C 0 C 0
s manLeu1.NW_012110441v1      144072 84 -    438239 cacctttaagagctg-taacact----gacgaggtctgcagcttcactcctgaagtcagcgagaccacgaacccaccagaaagaagaaa
i manLeu1.NW_012110441v1   C 0 I 6
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e chlSab2.chr4              90550148 683 -  91010382 I
e cerAty1.NW_012009470v1      246325 700 -  16742782 I
e colAng1.NW_012118799v1      177690 506 -    514179 I

a score=-325.000000
s hg38.chr5_KI270793v1_alt     44568 10 +    126136 aaactccaga
s panTro5.chr5             181311933  9 - 181907262 aa-ctccaga
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032727  8 - 183735486 a--ctccaga
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119362  8 +    698298 a--ctccaga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544707  7 - 121039945 ---ctccaga
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179501688  6 - 180051392 ---atgtgg-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181234364  6 - 181584905 ---ctgtgg-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228679  6 -   1764207 ---ctgtgg-
i macNem1.NW_012012389v1   C 0 C 0
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      144156  6 -    438239 I
e chlSab2.chr4              90550148 683 -  91010382 I
e cerAty1.NW_012009470v1      246325 700 -  16742782 I
e colAng1.NW_012118799v1      177690 506 -    514179 I

a score=697262.000000
s hg38.chr5_KI270793v1_alt     44578 135 +    126136 cacgtctaaacctctgaaggaacaaactccgg--acaccatctttaagaactgtaacacttactgcaagggtccgcggcttcattcttgaagtcagcgagaccaagaacccggtggaaggaaccaat-tctgaacaca
s panTro5.chr5             181311942 135 - 181907262 cacgtctaaacctctgaaggaacaaactccgg--aaaccatctttaagaactgtaacacttactgcaagggtccgcggcttcattcttgaagtcagcgagaccaagaacccagtggaaggaaccaat-tccggacaca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032735 135 - 183735486 cacgtctaaacctctgaaggaacaaactccgg--acaccatctttaagaactgtaacacttactgcaagggtccgcggcttcattcttgaagtcagcgagaccaagaacccagtggaaggaaccaat-tccagacaca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119370 135 +    698298 cacgtctaaacctctgaaggaacaaactccgg--acaccatctttaagaactgtaacacttactgcaagagtccgcggcttcattcttgaagtcagagagaccaagaacccagtggaaggaaccaat-tccggacaca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544714 135 - 121039945 cgcatctaaacatctgaaggaacaaaccttgg--acaccatctttaaaaactgtaacacttactgcaagggtctgcagcttcattcttgaagtcagtgagaccaagaacccaccagaaggaaccaat-tccacacaca
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179501694 133 - 180051392 cacatctgaacatctgaaggagcaaactccggacacaccatttttaagaactgtaacactcaccacgagggtccgcggtttcgttcttgaagtc----agaccaagaacccactggaaggaaccaat-tccggacaca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181234370 133 - 181584905 cacatctgaacatctgaaggagcaaactccggacacaccatttttaagaactgtaacactcaccacgagggtccgcggtttcgttcttgaagtc----agaccaagaacccactggaaggaaccaat-tccggacaca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228685 133 -   1764207 cacatctgaacatctgaaggagcaaactccggacacaccatttttaagaactgtaatactcaccacgagggtccgtggtttcgttcttgaagtc----agaccaagaacccactggaaggaaccaat-tccggacaca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247025 133 -  16742782 cacatctgaacatctgaaggagcaaactccggacacaccatttttaagaactgtaacactcaccacgagggtccgcagtttcattcttgaagtc----agaccaagaacccactggaaggaaccaat-tccggacaca
i cerAty1.NW_012009470v1   I 700 C 0
s chlSab2.chr4              90550831 133 -  91010382 cacatctgaacatctgaaggaacaaactccagacacaccatttttaagaactgtaacactcaccatgagggtccgcggtttcattcttgaagtc----agaccaagaacccactggaaggaaccaat-tccggacaca
i chlSab2.chr4             I 683 C 0
s manLeu1.NW_012110441v1      144162 133 -    438239 cacatctgaacatctgaaggagcaaaccccggacacaccatttttaagaactgtaacactcaccacgagggtctgcggtttcattcttgaagtc----agaccaagaacccactggaaggaaccaat-tccagacaca
i manLeu1.NW_012110441v1   I 6 C 0
s colAng1.NW_012118799v1      178196 134 -    514179 cacatctgaacatctgaaggaacaaactccggacacaccatttttaagagctgtaacactcaccacgagggtccgcggtttcgttcttgaagtc----agaccaagaacccactggaaggaaccaatatccggacaca
i colAng1.NW_012118799v1   I 506 C 0
e aotNan1.NW_018503740v1    25403679 195 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       72458 817 +    298490 I
e saiBol1.JH378155          15992786 564 +  16417988 I
e calJac3.chr2             203827329 193 + 204313951 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=711067.000000
s hg38.chr5_KI270793v1_alt     44713 71 +    126136 AGGGAACCAGGGGACAGAGGGAGACAGCCTCTCTGCCAGGGCCTGGCTGCATCTGCTGGGCAGAGGGCAAA
s panTro5.chr5             181312077 71 - 181907262 AGGGAACCAGGGGACAGAGGGAGACAGCCACTCTGCCAGGGCCTGGCTGCATCTGCTGGGCAGAGGGCAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032870 71 - 183735486 AGGGAACCAGGGGACAGAGGGAGACAGCCTCTCTGCCAGGGCCTGGCTGCATCTGCTGGGCAGAGGGCAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119505 71 +    698298 AGGGAACCAGGGGACAGAGGGAGACAGCCTTTCTGCCAGGGTCTGGCTGCATCTGCTGGGCAGAGGGCAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544849 71 - 121039945 AGGGAACCACGGGATAGAGGGAGACAGCCTCTCTGCCAGGGTCTGGCTGCATCCACTGGGTAGAGGGCAAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179501827 71 - 180051392 AGGGAACCAGGGGACAGAGGGAGGCAGCCTCTATGCCAGGGTCTGGCTGCATCCACTGGACAGAGGGCAAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181234503 71 - 181584905 AGGGAACCAGGGGACAGAGGGAGGCAGCCTCTATGCCAGGGTCTGGCTGCATCCACTGGACAGAGGGCAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228818 71 -   1764207 AGGGAACCAGGGGACAGAGGGAGGCAGCCTCTATGCCAGGGTCTGGCTGCATCCACTGGACAGAGGGCAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247158 71 -  16742782 AGGGAACCAGGGAACAGAGGGAGGCAGCCTCTATGCCAGGGTCTGGCTGCATCCACTGGACAGAGGGCAAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90550964 71 -  91010382 AGGGAACCAGGGGACAGAGGGAGGCAGCCTCTATGCCAGGGTCTGGCTGCATCCACTGGACAGAGGGCAAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      144295 71 -    438239 AGGGAACCAGGGGACAGAGGGAGGCAGCCTCTATGCCAGGGTCTGGCTGCATCCACTGGACAGAGGGCAAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      178330 71 -    514179 AGGGAACCAGGGGACAGAGGGAGGCAGCCTCCATGCCAGGGTCTGGCTGCGTCCACTGGACAGAGGGCAAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827522 69 + 204313951 AGGATATCAGGGGACAGAGGGAGGCAACCTCTCTGCCAGGCTCT--CTGCATCCACTGGGCAGAGGGCAGA
i calJac3.chr2             I 193 C 0
s saiBol1.JH378155          15993350 70 +  16417988 AGGAAACC-GGGGGCAGAGGGAGGCAACCTCTCTGCCAGGGTCTGGCTGCATCCACTGGGCAGAGGGCAGA
i saiBol1.JH378155         I 564 C 0
s cebCap1.NW_016108158v1       73275 71 +    298490 AGGAAACCAGGGGACAGAGGGAGGCAACCTCTCTGCCAGGGTCTGGCTGCCTCCACTGGGCAGAGGGCAGA
i cebCap1.NW_016108158v1   I 817 C 0
s aotNan1.NW_018503740v1    25403874 71 -  25620257 AGGAAACCAGGGGACAGAGGGAGGCAACCTCTCTGCCAGGGTCTGGCTGCATCCACTGGGCAGAGGGCAGA
i aotNan1.NW_018503740v1   I 195 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=32357.000000
s hg38.chr5_KI270793v1_alt     44784 4 +    126136 AGAA
s panTro5.chr5             181312148 4 - 181907262 AGAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032941 4 - 183735486 AGAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119576 4 +    698298 AGAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544920 4 - 121039945 AGAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179501898 4 - 180051392 AGAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181234574 4 - 181584905 AGAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228889 4 -   1764207 AGAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247229 4 -  16742782 AGAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551035 4 -  91010382 AGAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      144366 4 -    438239 AGAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      178401 4 -    514179 AGAA
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       73346 4 +    298490 AGAA
i cebCap1.NW_016108158v1   C 0 I 635
s aotNan1.NW_018503740v1    25403945 4 -  25620257 GGAA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15993420 0 +  16417988 C
e calJac3.chr2             203827591 0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I

a score=14898.000000
s hg38.chr5_KI270793v1_alt     44788 2 +    126136 AG
s panTro5.chr5             181312152 2 - 181907262 AG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032945 2 - 183735486 AG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119580 2 +    698298 AG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544924 2 - 121039945 AG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179501902 2 - 180051392 AG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181234578 2 - 181584905 AG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228893 2 -   1764207 AG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247233 2 -  16742782 AG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551039 2 -  91010382 AG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      144370 2 -    438239 AG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      178405 2 -    514179 AG
i colAng1.NW_012118799v1   C 0 C 0
s aotNan1.NW_018503740v1    25403949 2 -  25620257 AG
i aotNan1.NW_018503740v1   C 0 I 444
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e saiBol1.JH378155          15993420 0 +  16417988 C
e calJac3.chr2             203827591 0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I

a score=-14206.000000
s hg38.chr5_KI270793v1_alt     44790 2 +    126136 T-T
s panTro5.chr5             181312154 2 - 181907262 T-T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032947 2 - 183735486 T-T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119582 2 +    698298 T-T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544926 2 - 121039945 T-T
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179501904 1 - 180051392 t--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181234580 1 - 181584905 t--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228895 1 -   1764207 t--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247235 1 -  16742782 t--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551041 1 -  91010382 t--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      144372 1 -    438239 t--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      178407 2 -    514179 Ct-
i colAng1.NW_012118799v1   C 0 I 30
e aotNan1.NW_018503740v1    25403951 444 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e saiBol1.JH378155          15993420 0 +  16417988 C
e calJac3.chr2             203827591 0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I

a score=85910.000000
s hg38.chr5_KI270793v1_alt     44792 33 +    126136 GTGttgttttgttttgagatggagtctgtgttg----
s panTro5.chr5             181312156 33 - 181907262 GTGttgttttgttttgagatggagtctgtgttg----
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032949 33 - 183735486 GTGttgttttgttttgagatggagtctgtgttg----
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119584 33 +    698298 GTGttgttttgttttgagatggagtctgtgttg----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544928 33 - 121039945 GTGttgttgtgttttgagatggagtcactgttg----
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179501905 30 - 180051392 ------tttt-ttttgagatggactctcactccatcc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181234581 31 - 181584905 ------ttttgttttgagatggactctcactccatcc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228896 31 -   1764207 ------ttttgttttgagatggactctcactccatcc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247236 31 -  16742782 ------ttttgttttgagatggagtctcactccatcc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551042 31 -  91010382 ------ttttgttttgagatggagtctcactccatcc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      144373 31 -    438239 ------ttttgttttgagatggagtctcactccatcc
i manLeu1.NW_012110441v1   C 0 C 0
e aotNan1.NW_018503740v1    25403951 444 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e saiBol1.JH378155          15993420  0 +  16417988 C
e calJac3.chr2             203827591  0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I
e colAng1.NW_012118799v1      178409 30 -    514179 I

a score=1318818.000000
s hg38.chr5_KI270793v1_alt     44825 260 +    126136 cccaggctggagtgcagtggcaccatttcagctcactgcaatctctgct-----tcccgggttcaagtgattctcccacctccgcct-cccaagtagctaggattacaggtgcccgccaccaagactagctaatttttgtatttttagtagggatggggtttcaccatgttggtcaggctggtcttgaactcctgacctcagatgatccacccacctctgcctcccgaagtgctgggattacaggcatgagccactgcacctgATC
s panTro5.chr5             181312189 260 - 181907262 cccaggctggagtgcagtggcaccatttcagctcactgcaatctctgct-----tcccgggttcaagtgattctcccacctctgcct-cccaagtagctaggattacaggtgcccgccaccaagactagctaatttttgtatttttagtagggatggggtttcaccatgttggccaggctggtcttgaactcctgacctcagatgatccacccacctctgcctcccgaagtgctgggattacaggcatgagccactgcacctgATC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183032982 260 - 183735486 cccaggctggagtgcagtggcaccatttcagctcactgcaatctctgct-----tcccgggttcaagtgattctcccacctctgcct-cccaagtagctaggattacaggtgcccgccaccaagactagctaatttttgtatttttagtagggatggggtttcaccatgttggccaggctggtcttgaactcctgacctcagatgatccacccacctctgcctcccgaagtgctgggattacaggcatgagccactgcacctgATC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119617 261 +    698298 cccaggctggagtccagtggtgccatttcagctcactgcaatctctgcc-----tcccgggtccaagtgattctcccacctcagcctccccaagtagctaggattacaggtgcccgccaccacgactagctaatttttgtatttttagtagggatggggtttcaccatattggcgaggctggtcttgaactcctgacctcagatgatccacccacctctgccccccgaagtgctgggattacaggcatgagacactgcacctgATC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120544961 260 - 121039945 cccaggctggagtgcagtggcgccatttcagctcactgcaacctctgcc-----tcccgggttcaagtgattctcccacctcagcct-cccaagtagctaggattacgggcgcccgccaccacgactagctaatttttgtatttttagtagggatggggtttcaccatgttggccaggttggtctcgaactcctgacctcaggttatccacccacttctgcctcccgaagtgctgggattacaggcatgagccactgcacctgATC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179501935 253 - 180051392 cctaggctggattgcagtggcgccatctcagttcactgcaacctccgctccgcctcccgggttcaagcgattcttccacctcagcct-ccccggtagctaggattacaggcgcctgccaccatgcc----------ttgtgttttcc-tagagacggggtttcaccttgtgggccaggctggtcttgaactcctaacctctggtgatccacccacctctgcctcccaaagtgct-ggattacaggcatgagccgctgcacccagcc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181234612 254 - 181584905 cctaggctggattgcagtggcgccatctcagttcactgcaacctccgctccgcctcccaggttcaagcgattcttccacctcagcct-ccccggtagctaggattacaggcgcctgccaccatgcc----------ttgtgttttcc-tagagacggggtttcaccttgttggccaggctggtcttgaactcctaacctctggtgatccacccacctctgcctcccaaagtgctgggattacaggcatgagccgctgcacccagcc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      228927 254 -   1764207 cctaggctggattgcagtggcgccatctcagttcactgcaacctccgctccgcctcccgggttcaagcgattcttccacctcagcct-ccccggtagctaggattacaggcgcctgccaccatgcc----------ttgtgttttcc-tagagacggggtttcaccttgttggccaggctggtcttgaactcctaacctctggtgatccaccctcctctgcctcccaaagtgctgggattacaggcatgagccgctgcacccagcc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247267 254 -  16742782 cctaggctggattgcagtggcgccatctcagttcactgcaacctccgctccgcctcccgggttcaagcgattcttccacctcagcct-cctcggtagctaggattacaggcgcctgccaccatgcc----------ttgtgttttcc-tagagacagggtttcaccttgttggccaggctggtcttgaactcctaacctctggtgatccacccacctctgcctcctaaagtgctgggattacaggcatgagccgctgcacccagcc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551073 250 -  91010382 cctaggctgaattgcagtggcgccatctcagttcactgcaacctccgctccgcctcccggattcaagcgattcttccacctcagcct-ccccggtagctaggattacaggcgcctgccaccatgcc----------ttgtgttttcc-tagagatggggtttcaccttgttggccaggctggtcttgaactcctaacctctggtgat----ccacctctgcctcccaaagtgctgggattacaggcatgagccgctgcacccagcc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      144404 254 -    438239 cctaggctggattgcagtggcgccatctcagttcactgcaacctccgctccgcctcccgggttcaggcgattcttccacctcagcct-ccccggtagctaggattacaggcgcctgccaccatgcc----------ttgtgttttcc-tagagacggggtttcaccttgttggccaggctggtcttgaactcctaacctctggtgatccacccacctctgcctcccaaagtgctgggattacaggcatgagccgctgcacccagcc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      178439 254 -    514179 cctaggctggattgcaggggcgccatctcagttcactgcaacctccgctccgcctcccgggttcaagcgattcttccccctcagcct-ccccggtagctaggattacaggcgcctgccaccatgcc----------ttgtgttttcc-tagagacggggtttcaccttgctggccaggctggtcttgaactcctaacctctggtgatccacccacctctgcctcccaaagtgctgggattacaggcatgagccactgcacccagcc
i colAng1.NW_012118799v1   I 30 C 0
e aotNan1.NW_018503740v1    25403951 444 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e saiBol1.JH378155          15993420   0 +  16417988 C
e calJac3.chr2             203827591   0 + 204313951 C
e canFam3.chr34             11702531 3063 +  42124431 I

a score=2370053.000000
s hg38.chr5_KI270793v1_alt     45085 350 +    126136 AGAaagttttaa------ttatggaacactcctaacgtacacggaggcagagagagtcag-ccgcccctcacc---accttctaacacactcacatttggccgtgtttacttcacctattatcttggtggagggactcgcgttggcttatagacatcacgccattagacccctggggaactcagcagagcagatgtctctaaggaataaggcctgtttcctatggagcccaatacagtaggccccaaacaagcacaattccctcgcatcagccaatccccaggccacatccactttttcccatcgtctcagaaatgCAGACTCCTGGCTGCTTCAAACATCCAGCCGAGGTGTGTGTTGC
s panTro5.chr5             181312449 350 - 181907262 AGAaagttttaa------ttatggaacgctcctaacatacacggaggcagagagagccag-ccgcccctcgcc---accttctaacacactcacatttggccgtgtttacttcacctattatcttggtgaagggactcgcgttggcttatagacatcacgccatccgacccctggggaactcagcagagcagatgtctctaaggaataaggcctgtttcccatggagcccaatacagtaggccccaaacaagcacaattccctcgcatcagccaatccccaggccacatccactttttcccattgtctcagaaatgCAGACTCCTGGCTGCTTCAAACAGCCAACCGAGGTGTGTGTTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033242 350 - 183735486 AGAaagttttaa------ttatggaacgctcctaacatacacggaggcagagagagccag-ccacccctcgcc---accttctaacacactcacatttggccgtgtttacttcacctattatcttggtggagggactcgcgttggcttatagacatcacgccatccgacccctggggaactcagcagagcagatgtctctaaggaataaggcctgtttcccatggagcccaatacagtaggccccaaacaagcacaattccctcgcatcagccaatccccaggccacatccactttttcccattgtctcagaaatgCAGACTCCTGGCTGCTTCAAACATCCAACCGAGGTGTGTGTTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      119878 349 +    698298 AGAAAGTTTTAA------TTATGGAACGCTCCTAACGTACACGGAGGCAGAGAGAGTCAG-CCGTCCCTTACC---ACCTTCTAACACACTCATATTTGGCCGTGTTTACTTCACCTATTGTCTTTG-GAAGGGACTTGCGTTGGCTTGTAGACATCACGCCATCAGACCCCTGGGGAACTCAGCAGagcagatgtctctaaagaataaggtttgtttcctatggagcccaatacagtaggccccaaacaagcgcaattcccttgcatcagccaatccccaggccacatccactttttcccattgtctcagaaatgCAGACTCCTGGCTGCTTCAAACATCCAACCGAAGTGTGTGTTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545221 356 - 121039945 AGAAAGTTTTAATTATGGTTATGGAACGCTTCCAACGTACACGGAGGCAGAGAGAGTCAG-CTGCCCCTCACC---GCCTTCTAACACACTCACATTTGGCTGTGTTTACTTCACCTATTATTTTGGTGGAGGGACTCGGGTTGGCTTATagacatcatgccatcggacccctggggaactcagcagagcagatgtctctaaagaataaagcctgtttgctgtggagcccaatactgtaggccccaaacaagcacaattccctcacatcagccaatccccaggccacatccactttttcccattgtctcagaagtgCAGACTCCTGGCTGCTTCAAACATCCAACCAAGGTGTGTGTTGC
i nomLeu3.chr6             C 0 I 2
s rheMac8.chr6             179502188 347 - 180051392 AGAaagttttaa------ttatggaaagtttctaacatacacggaggcagagagagccagcccaccccgcacccagccactctaacacactcacatttggccgtgtttgcttcacctatTATCTTGGTGGAGGGACCCGGCTCGACTTATAGATAGTACGCCATCAGACCCCTCGGGAACTCAGCAGAGCAGATGTCTCTAAAGAATAAGTCCTGTTTCCTATGGAGCCCAATACAGTAGGCCCCAAACAAGCACGATTCCCTCACATCAGCCAATCCCCAGGCCACACCCACTTTTTCCCATTGTCCCGGAAATGCAGACTAATGGCTTCT-------ACCAACTGAGGTGTGTGTTGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181234866 347 - 181584905 AGAaagttttaa------ttatggaaagtttctaacatacacggaggcagagagagccagcccaccccgcacccagccactctaacacactcacatttggccgtgtttacttcacctatTATCTTGGTGGAGGGACCCGGCTCGACTTATAGACAGCACGCCATCAGACCCCTCGGGAACTCAGCAGAGCAGATGTCTCTAAAGAGTAAGTCCTGTGTCCTATGGAGCCCGATACGGTAGGCCCCAAACAAGCACGATTCCCTCACATCAGCCAATCCCCAGGCCACACCCACTTTTTCCCATTGTCCCGGAAATGCAGACTAATGGCTTCT-------ACCAACTGAGGTGTGTGTTGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      229181 347 -   1764207 AGAaagttttaa------ttatggaaagtttctaacatacacggaggcagagagagccagcccaccccgcacccagccactctaacacactcacatttggccgtgtttacttcacctattatcttggtggagggacccggctcgacttatagacagcacgccatcagacccctcgggaactcagcagagcagatgtctctaaagaataagtcctgtttcctatgaagcccaatacggtaggccccaaacaagcacgattccctcacatcagccaatccccaggccacacccactttttcccattgtcccggaaatgCAGACTAATGGCTTCT-------ACCAACTGAGGTGTGTGTTGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247521 347 -  16742782 AGAaagttttaa------ttatggaaagtttctaacatacacggaggcagagagagccagcccaccccgcacccagccactctaacacactcacatttggccgtgtttacttcacctatTATCTTGGTGGAGGGACCCGGGTCGACTTATAGACAGCATGCCATCAGACCCCTCGGGAACTCAGCAGAGCAGATGTCTCTAAAGAATAAGTCCTGTTTCCTATGGAGCCCAATACGGTAGGCCCCAAACAAGCACGATTCCCTCACATCAGTCAATCCGCAGGCCACACCCACTTTTTCCCATTGTCCCGGAAATGCAGACTAATGGCTTCT-------ACCAACTGAGGTGTGTGTTGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551323 347 -  91010382 AGAaagttttaa------ttatggaaagtttctaacatacagggaggcagagagagccagcccaccccgcacccagccactcgaacacactcacatttggccgtgtttacttcacctatTATCTTGGTGGAGGGACCCGGCTCGACTTACAGACAGCAAGCCATCAGACCCCTCGGGAACTCAGCAGAGCAGATGTCTCTAAAGAATAAGTCCTGTTTCCTATGGAGCCCAATACGGTAGGCCCCAAACAAGCACGATTCCCTCACATCAGCCAATCCCTAGGCCACACCCACTTTTTCGCATTGTCCCGGAAATGCAGATTAATGGCGTCT-------GCCAACTGAGGTGTGTGTTGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      144658 347 -    438239 AGAaagttttaa------ttatggaaagtttctaacatacacggaggcagagagagccagcccaccccgcacccagccactctaacacactcacatttggccgtgtttacttcacctattatcttggtggagggacccgggtcgacttatagacagcatgccatcagacccctcgggaactcagcagagcagatgtctctaaagaataagtcctgtttcctatggagcccaatacggtaggccccaaacaagcacgattccctcacatcagccaatccccaggccacacccactttttcccattgtcccggaaatgCAGACTAATGGCTTCT-------ACCAACTGAGGTGTGTGTTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      178693 346 -    514179 AGAAAGCtttaa------tcatggaaagtttctaacatacacagaggcagagagagccagcccaccccgcacccagccattctaacacactcacatttggccgtgtttacttcacctgtT-TCTTGGTGGAGGGTCCCAGGTCGACTTATAGACAGCATGTCATCAGACCCCTCGGGAACTCAGCAGAGCAGATGTCGCTAAAGAATAAGTCCTGTTTCCTATGGAGCCCAATACGGTAGGCCCCAAACAAGCACGGTTCCCTCACATCAGCCAATCCCCAGGCCACACCCACTTTTTCCCATTGTCCCCGAGATGCAGACTAACGGCTTCT-------ACCAACTGAGGTGTGTGTTGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827591 344 + 204313951 AGAAAGTTTTAA------TTATGGAAAGCTTGTAACGTACATGGAGGCAGAGGGAGCCAA-CCGCCCCTCACC---ACCATCTAACACACTCACGTCTGCCTGTGTTTACTTCACCTATTATCCTGGTCAAGGGAGTCAGGTTGACTTATACACATCGTGGCATCGGCCCCCTCAGGAACTC-----AGCAGGTGTCTCTAAAGAGTAAGGCCTGT-TCCTATAAAACCCAGTACCACAGGCCCCAAACAGGTACAATTCCCTCACATCGGCCAATCCCCAGGCCACACCCACTTTTTCCCATTGTCCCAGAAACACAGGCTCCTGGCTCCTTCCATCGTCCAACGGAGGTGTGTGCTGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993420 343 +  16417988 AGAAAATTTTAA------TTACAGAAAGATTGTAACGTACACAGAGGCAGAGAGAGCCAG-CCGCCCCCCACC---ACTGTCGAACGCACTCACATCCGGCTGTGTTTACTTCACCTATTATCCTGGTCGAGGGAGTCAGGTCGACGTATACACACCATGCCATCAGACCCCTCGGGAACAc-----agcaagcgtctctaaagaataaggcctgt-tcctgtggaacccaataccacagg-cccaaacaagtataattccctcacatcagccaatccccagatcacgcccacttttttccattgtcccagaaaCACAGGCTCCTGGCTTCTTCCACCGTCCAACAGAGGTGTGTGCTGC
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25403951 444 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=9061.000000
s hg38.chr5_KI270793v1_alt     45435 2 +    126136 AT
s panTro5.chr5             181312799 2 - 181907262 AT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033592 2 - 183735486 AT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120227 2 +    698298 AT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179502535 2 - 180051392 AT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235213 2 - 181584905 AT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      229528 2 -   1764207 AT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247868 2 -  16742782 AT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551670 2 -  91010382 AT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145005 2 -    438239 AT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179039 2 -    514179 AT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827935 2 + 204313951 AC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993763 2 +  16417988 CC
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25403951 444 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120545577 2 - 121039945 I

a score=93310.000000
s hg38.chr5_KI270793v1_alt     45437 12 +    126136 TCAGCGTTTGTG
s panTro5.chr5             181312801 12 - 181907262 TCAGCGTTTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033594 12 - 183735486 TCAGCGTTTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120229 12 +    698298 TCAGCGTTTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545579 12 - 121039945 TCAGCGTTTGTG
i nomLeu3.chr6             I 2 C 0
s rheMac8.chr6             179502537 12 - 180051392 TCAGCATTTGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235215 12 - 181584905 TCAGCATTTGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      229530 12 -   1764207 TCAGCATTTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247870 12 -  16742782 TCAGCATTTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551672 12 -  91010382 TCAGCATTTGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145007 12 -    438239 TCAGCATTTGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179041 12 -    514179 TCAGCATTTGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827937 12 + 204313951 TCGGCGTTTGTG
i calJac3.chr2             C 0 I 32
s saiBol1.JH378155          15993765 12 +  16417988 TCAGCGTATGTG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25403951 444 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=9100.000000
s hg38.chr5_KI270793v1_alt     45449 1 +    126136 G
s panTro5.chr5             181312813 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033606 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120241 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545591 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502549 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235227 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      229542 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247882 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551684 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145019 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179053 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827981 1 + 204313951 G
i calJac3.chr2             I 32 C 0
s saiBol1.JH378155          15993777 1 +  16417988 G
i saiBol1.JH378155         C 0 I 33
e aotNan1.NW_018503740v1    25403951 444 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=134514.000000
s hg38.chr5_KI270793v1_alt     45450 31 +    126136 CGGTGCTGGCTCGACATGGATTCAGTGTGTA
s panTro5.chr5             181312814 31 - 181907262 CGGTGCTGGCCCGACATGGATTCAGCATGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033607 31 - 183735486 CGGTGCTGGCTCGACATGGATTCAGCATGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120242 31 +    698298 CGGTGCTGGCTCAACATGGATTCAGCATGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545592 31 - 121039945 TGGTTGTGGCTCGACATGCATTCAGCGTGTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502550 31 - 180051392 TAATGCTGGCTGGGCATGCATTCAGAGTTTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235228 23 - 181584905 TAATGCTGGCTGGGCATGCATTC--------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      229543 31 -   1764207 TAATGCTGGCTGGGCATGCATTCAGCGTTTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247883 31 -  16742782 TAATGCTGGCTGGGCATGCATTCAGACTTTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551685 31 -  91010382 TAATGCTGGCTGGGCATGCATTCAGAGTTTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145020 31 -    438239 TAATGCTGGCTGGGCATGCATTCAGAGTTTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179054 23 -    514179 TAATGCTGGCTGGGCATGCATTC--------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827982 30 + 204313951 GGATGGTGGCTCAGC-TGCATTCAGCATGTA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993811 30 +  16417988 GGATGGTGGCTCAGC-TGCATTCAGCATGTA
i saiBol1.JH378155         I 33 C 0
e aotNan1.NW_018503740v1    25403951 444 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=22698.000000
s hg38.chr5_KI270793v1_alt     45481 3 +    126136 TGG
s panTro5.chr5             181312845 3 - 181907262 TGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033638 3 - 183735486 TGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120273 3 +    698298 TGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545623 3 - 121039945 TGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502581 3 - 180051392 TGG
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      229574 3 -   1764207 TGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247914 3 -  16742782 TGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551716 3 -  91010382 TGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145051 3 -    438239 TGG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203828012 3 + 204313951 TGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993841 3 +  16417988 TGG
i saiBol1.JH378155         C 0 T 66
s aotNan1.NW_018503740v1    25404395 3 -  25620257 TGG
i aotNan1.NW_018503740v1   I 444 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I
e colAng1.NW_012118799v1      179077 0 -    514179 C
e macFas5.chr6             181235251 0 - 181584905 C

a score=85879.000000
s hg38.chr5_KI270793v1_alt     45484 15 +    126136 GGATGCTGGCTTGGT
s panTro5.chr5             181312848 15 - 181907262 GGATGCTGGCTTGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033641 15 - 183735486 GGATGCTGGCTTGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120276 15 +    698298 GGATGCTGGCTTGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545626 15 - 121039945 GGATGCTGGCTTGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502584 15 - 180051392 GGATGGTGGCTTGGC
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      229577 15 -   1764207 GGATGGTGGCTTGGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247917 15 -  16742782 GGATGGTGGCTTGGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551719 15 -  91010382 GGATGGTGGCTTGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145054 15 -    438239 GGATGGTGGCTTGGC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203828015 15 + 204313951 AGATGCTGGCTCAGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993778 15 +  16417988 AGATGCTGGCTCAGT
i saiBol1.JH378155         T 66 I 66
s aotNan1.NW_018503740v1    25404398 15 -  25620257 AGATGCTGGCTCAGT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I
e colAng1.NW_012118799v1      179077  0 -    514179 C
e macFas5.chr6             181235251  0 - 181584905 C

a score=122188.000000
s hg38.chr5_KI270793v1_alt     45499 18 +    126136 GTGCATTGAGTGTTTGTG
s panTro5.chr5             181312863 18 - 181907262 GTGCATTGAGTGTTTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033656 18 - 183735486 GTGCATTGAGTGTTTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120291 18 +    698298 GTGCACTGAGTGTTTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545641 18 - 121039945 GTGCATTGAGTGTTTGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502599 18 - 180051392 ATGCACTGAGCGTTTGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235251 10 - 181584905 --------AGAGTTTGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      229592 18 -   1764207 ATGCACTGAGCGTTTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247932 18 -  16742782 ATGCACTGAGCGTTTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551734 18 -  91010382 ATGCACTGAGCGTTTGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145069 18 -    438239 ATGCACTGAGCGTTTGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179077 10 -    514179 --------AGAGTTTGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203828030 17 + 204313951 GTGCA-TGAGTGTTTGTG
i calJac3.chr2             C 0 T 98
s saiBol1.JH378155          15993859 18 +  16417988 GTGCATTGGGCATTTGTG
i saiBol1.JH378155         I 66 C 0
s aotNan1.NW_018503740v1    25404413 18 -  25620257 GTGCATTGAGCGTTTGTG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=115316.000000
s hg38.chr5_KI270793v1_alt     45517 17 +    126136 GGGATACTGGCTTGGCA
s panTro5.chr5             181312881 17 - 181907262 GGGATACTGGCTTGGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033674 17 - 183735486 GGGATACTGGCTTGGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120309 17 +    698298 GGGATACTGGCTCGGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545659 17 - 121039945 GGGATACTGGCTCAGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502617 17 - 180051392 GGGAAGGTGGCTCGGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235261 17 - 181584905 GGGATGGTGGCTTGGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      229610 17 -   1764207 GGGAAGGTGGCTCGGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247950 17 -  16742782 GGGAAGGTGGCTCGGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551752 17 -  91010382 GGGAAGGTGGCTCGGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145087 17 -    438239 GGGAAGGTGGCTCGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179087 17 -    514179 GGGATGGTGGCTTGGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827949 15 + 204313951 GGGATCGGGGCTAGG--
i calJac3.chr2             T 98 C 0
s saiBol1.JH378155          15993877 17 +  16417988 GGGACACTGGCTCGGCA
i saiBol1.JH378155         C 0 T 101
s aotNan1.NW_018503740v1    25404431 17 -  25620257 GGGATACTGGCTCAGCA
i aotNan1.NW_018503740v1   C 0 I 33
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=95740.000000
s hg38.chr5_KI270793v1_alt     45534 14 +    126136 TGCATTCAACCTTT
s panTro5.chr5             181312898 14 - 181907262 TGCATTCAACCTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033691 14 - 183735486 TGCATTCAACCTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120326 14 +    698298 TGCCTTCAGCCTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545676 14 - 121039945 TGCATTCAACCTTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502634 14 - 180051392 TGCATTTAGCCTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235278 14 - 181584905 TGCACTGAGCGTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      229627 14 -   1764207 TGCATTTAGCCTTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247967 14 -  16742782 TGCATTTAGCCTTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551769 14 -  91010382 TGCATTTAGCCTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145104 14 -    438239 TGCATTTAGCCTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179104 14 -    514179 TGCACTGAGCGTTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827964 14 + 204313951 TGCATTCAGAGTTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993793 14 +  16417988 TGCATTCAGAGTTC
i saiBol1.JH378155         T 101 C 0
s aotNan1.NW_018503740v1    25404481 14 -  25620257 TACATTCAGCATTT
i aotNan1.NW_018503740v1   I 33 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e cebCap1.NW_016108158v1       73350 635 +    298490 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=126150.000000
s hg38.chr5_KI270793v1_alt     45548 13 +    126136 GTGGGGATGCTGG
s panTro5.chr5             181312912 13 - 181907262 GTGGGGATGCTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033705 13 - 183735486 GTGGGGATGCTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120340 13 +    698298 GTGGGCATGCTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545690 13 - 121039945 GTGGGGATGCTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502648 13 - 180051392 GTGGGGATGCTGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235292 13 - 181584905 GTGGGGAAGGTGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      229641 13 -   1764207 GTGGGGATGCTGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247981 13 -  16742782 GTGGGGATGCTGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551783 13 -  91010382 GTGGGGATGCTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145118 13 -    438239 GTGGGGATGCTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179118 13 -    514179 GTGGGGAAGGTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827978 13 + 204313951 GTGGGGATGGTGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993807 13 +  16417988 ATGGGGATGGTGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       73985 13 +    298490 GTGGGGACGCCGG
i cebCap1.NW_016108158v1   I 635 C 0
s aotNan1.NW_018503740v1    25404495 13 -  25620257 GTGGGGATGCTGG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I

a score=28139.000000
s hg38.chr5_KI270793v1_alt     45561 10 +    126136 CTCAGTGTGC
s panTro5.chr5             181312925 10 - 181907262 CTCAGTGTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033718 10 - 183735486 CTCACTGTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120353 10 +    698298 CTCAGTGTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545703 10 - 121039945 CTCAGTGTGC
i nomLeu3.chr6             C 0 T 34
s rheMac8.chr6             179502661  6 - 180051392 CTCAGT----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235305  5 - 181584905 CTCGG-----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      229654 10 -   1764207 CTCAGTATAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      247994  6 -  16742782 CTCAGT----
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      145131  6 -    438239 CTCAGT----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179131 10 -    514179 CTCAGCATGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203827991  9 + 204313951 CTCAGC-TGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993820  9 +  16417988 CTCAGC-TGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       73998 10 +    298490 CTCAGTGTAC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25404508 10 -  25620257 TTCAGTATAC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e chlSab2.chr4              90551796  0 -  91010382 C

a score=128686.000000
s hg38.chr5_KI270793v1_alt     45571 29 +    126136 ATTCAGCCTTTGTGGGGATGCTGGCTCAG
s panTro5.chr5             181312935 29 - 181907262 ATTCAGCCTTTGTGGGGATGCTGGCTCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033728 29 - 183735486 ATTCAGCCTTTGTGGGGATGCTGGCTCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120363 29 +    698298 ATTCAGCCTTTGTGGGGATGCTGGCTCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545679 29 - 121039945 ATTCAACCTTTGTGGGGATGCTGGCTCAG
i nomLeu3.chr6             T 34 C 0
s macNem1.NW_012012389v1      229664 29 -   1764207 GTTCAGCATTTGTGGGGATGCTGGCTCAG
i macNem1.NW_012012389v1   C 0 I 8576
s colAng1.NW_012118799v1      179141 29 -    514179 ATTTAGCCTTTGTGGGGATACTGGCTCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203828000 29 + 204313951 ATTCAGCATGTATGGAGATGCTGGCTCAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993829 29 +  16417988 ATTCAGCATGTATGGAGATGCTGGCTCAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       74008 29 +    298490 ATTCAGCGTTCGTGGGGACGCTGGCTCAG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25404518 29 -  25620257 ATTCAGCATTTGTGGGGATGCTGGTTCAG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      145137  0 -    438239 C
e chlSab2.chr4              90551796  0 -  91010382 C
e cerAty1.NW_012009470v1      248000  0 -  16742782 C
e macFas5.chr6             181235310  0 - 181584905 C
e rheMac8.chr6             179502667  0 - 180051392 C

a score=16382.000000
s hg38.chr5_KI270793v1_alt     45600 5 +    126136 TGTGC
s panTro5.chr5             181312964 5 - 181907262 TGTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033757 5 - 183735486 TGTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120392 5 +    698298 TGTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545708 5 - 121039945 TGTGC
i nomLeu3.chr6             C 0 I 1
s macFas5.chr6             181235310 5 - 181584905 CATGC
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203828029 5 + 204313951 TGTGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993858 5 +  16417988 TGTGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       74037 5 +    298490 TGTAC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25404547 5 -  25620257 TATAC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e manLeu1.NW_012110441v1      145137 0 -    438239 C
e chlSab2.chr4              90551796 0 -  91010382 C
e cerAty1.NW_012009470v1      248000 0 -  16742782 C
e colAng1.NW_012118799v1      179170 0 -    514179 C
e macNem1.NW_012012389v1      229693 8576 -   1764207 I
e rheMac8.chr6             179502667 0 - 180051392 C

a score=61800.000000
s hg38.chr5_KI270793v1_alt     45605 35 +    126136 ATTCAGCCTTTGTGGGGATGCTGGCTCAATATACA
s panTro5.chr5             181312969 35 - 181907262 ATTCAGCCTTTGTGGGGATGCTGGCTCAATATACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033762 35 - 183735486 ATTCAGCCTTTGTGGGGATGCTGGCTCTATATACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120397 35 +    698298 ATTCAGCCTTTGTGGGGATGCTGGCTCAATATGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179502667  5 - 180051392 ------------------------------ATACG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235315 35 - 181584905 ATTTAGCCTTTGTGGGGATGCTGGCTCAGTATACG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      248000  5 -  16742782 ------------------------------ATACG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      145137  5 -    438239 ------------------------------ATACG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179170  6 -    514179 -----------------------------TATACG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203828034 34 + 204313951 A-TGAGTGTTTGTGGGGATACTGGCTCAGCATGCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993863 35 +  16417988 ATTGGGCATTTGTGGGGACACTGGCTCGGCACCCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       74042 35 +    298490 ATTCGGCGTTCGTGGGGACGTGGGCTCAGTGTACA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25404552 35 -  25620257 ATTCAGCATTTGTGGGGACACTGGCTCAGTATACA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11702531 3063 +  42124431 I
e nomLeu3.chr6             120545713  1 - 121039945 I
e chlSab2.chr4              90551796  0 -  91010382 C
e macNem1.NW_012012389v1      229693 8576 -   1764207 I

a score=157492.000000
s hg38.chr5_KI270793v1_alt     45640 27 +    126136 ----TACATTCAGCATTTGTGGGGATGCTGA
s panTro5.chr5             181313004 23 - 181907262 ----T----TCAGCATTTGTGGGGATGCTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033797 23 - 183735486 ----T----TCAGCATTTGTGGGGATGCTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120432 23 +    698298 ----T----TCAGCCTTTGTGGGGATGCTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179502672 23 - 180051392 ----T----TCAGCATTTGTGGGGATGCTGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235350 23 - 181584905 ----T----TCAGCATTTGTGGGGATGCTGG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      248005 23 -  16742782 ----T----TCAGCATTTGTGGGGATGCTGG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      145142 23 -    438239 ----T----TCAGCATTTGTGGGGATGCTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179176 23 -    514179 ----T----TCAGCATTTGTGGGGATGCTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203828068 22 + 204313951 ----T----TCAGCA-TTGTGGGGATGCTGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993898 23 +  16417988 ----T----TCAGCATTTGTGGGGATGCTGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       74077 23 +    298490 ----T----TCGGCGTTTGTGGGGACGCCGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25404587 23 -  25620257 ----T----TCAGCATTTGTGGGGATGCTGG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11705594 27 +  42124431 TGCAT----TTGCCATTTGTGGACATGGTGG
i canFam3.chr34            I 3063 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e nomLeu3.chr6             120545713  1 - 121039945 I
e chlSab2.chr4              90551796  0 -  91010382 C
e macNem1.NW_012012389v1      229693 8576 -   1764207 I

a score=105328.000000
s hg38.chr5_KI270793v1_alt     45667 13 +    126136 CTCAGTGTCCTTT
s panTro5.chr5             181313027 13 - 181907262 CTCAGTGTCCTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033820 13 - 183735486 CTCAGTGTCCTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120455 13 +    698298 CTCAGTGTCCTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179502695 13 - 180051392 CTCAGCGTCCTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235373 13 - 181584905 CTCAGCGTCCTTT
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      248028 13 -  16742782 CTCAGCGTCCTTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551796 13 -  91010382 CTCAGTGTCCTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145165 13 -    438239 CTCAGCGTCCTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179199 13 -    514179 CTCAGTGTCCTTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203828090 13 + 204313951 CTCAGTATCCTTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993921 13 +  16417988 CTCAGTATCCTTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       74100 13 +    298490 CTCAGTGTCCTTT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25404610 13 -  25620257 CTCAGTGTCCTTT
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11705621 13 +  42124431 TTTGGTTACTTGT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e nomLeu3.chr6             120545713  1 - 121039945 I
e macNem1.NW_012012389v1      229693 8576 -   1764207 I

a score=94381.000000
s hg38.chr5_KI270793v1_alt     45680 10 +    126136 ACTCAGAGAA
s panTro5.chr5             181313040 10 - 181907262 ACTCAGAGAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033833 10 - 183735486 ACTCAGAGAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120468 10 +    698298 ACTCAGAGAA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179502708 10 - 180051392 ACTCAGAGAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235386 10 - 181584905 ACTCAGAGAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238269 10 -   1764207 ACTCAGAGAG
i macNem1.NW_012012389v1   I 8576 C 0
s cerAty1.NW_012009470v1      248041 10 -  16742782 ACTCAGAGAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551809 10 -  91010382 ACTCAGAGAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145178 10 -    438239 ACTCAGAGAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179212 10 -    514179 ACTCCAAGAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203828103 10 + 204313951 ACTCAGAGAA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993934 10 +  16417988 ACTCAGAGAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       74113 10 +    298490 ACTCAGAGAA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25404623 10 -  25620257 ACTTGGAGAA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11705634 10 +  42124431 ATCCAGAGAA
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1858449 273 -   2165740 I
e nomLeu3.chr6             120545713  1 - 121039945 I

a score=1561521.000000
s hg38.chr5_KI270793v1_alt     45690 169 +    126136 GTACAA---AGAGAAAAGAAAGTAGACCAGCACCTCACTCTTTATAAAACTTCTGCTTATATCTTTAGAAAGTAATCAAGGGTAGGTGGGTGAGACCAGGAGATTCAACCTGGAGAGGCATGAAGAGAAACCGGCAGCACCTGCCCAGCCTCTGGCCAGGTTGGCCCTGCCA
s panTro5.chr5             181313050 169 - 181907262 GTACAA---AGAGAAAAGAAAGTAGACCAGCACCTCACTCTTTATAAAACTTCTGCTTATATCTTTAGAAAGTAATCAAGGGTAAGTGGGTGAGACCAGGAGATTCAACCTGGAGAGGCATGAAGAGAAACCGGCAGCACCTGCCCAGCCTCTGGCCAGGTTGGCCCTGCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183033843 169 - 183735486 GTACAA---AGAGAAAAGAAAGTAGACCAGCACCTCACTCTTTATAAAACTTCTGCTTATATCTTTAGAAAGTAATCAAGGGTAAGTGGGTGAGACCAGGAGATTCAACCTGGAGAGGCATGAAGAGAAACCGGCAGCACCTGCCCAGCCTCTGGCCAGGTTGGCCCTGCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120478 169 +    698298 GTACAA---AGAGAAAAGAAAGTAGACCAGCACCTCACTCTTTATAAAACTTCTGCTTATATCTTTAGAAAGTAATCAAGTGTAGGTGGGTGAGACCAGGAGATTCAACCTGGAGAGGCATGAAGAGAAACCGGCAGCACCTGCCCAGCCTCTGGCCAGGTTGGCCCTGCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545714 158 - 121039945 GTACGA---AGAGAAAAGAAAGTAGACCAGCACCTCACTCTTTATAAAACTTCTGCTTATATGTTTAGAAAGTAATCAAGTGTAGGTGGGTGAGACCAGGAGATTCGACCTGGAGAGGCATGAAGAGAAACCAG-----------CAGCCTCTGGCCTGGTCGGCCCTGCCA
i nomLeu3.chr6             I 1 C 0
s rheMac8.chr6             179502718 172 - 180051392 GTACAAAAGAGAAAACAAAAAGTAGACCAGTACCTCACTCTTTATAAAACTTCTGCTCGTGTCTTTAGAAAGTAATCAAGTGCAGGTGGGTGATACCAGGAGCTTCAACCTAGAGAGGCATGAAGAGAAACCAGCAGCACCTGCCCAGCCTCTGGCCAGGTCAGCCCTGCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235396 172 - 181584905 GTACAAAAGAGAAAACAAAAAGTAGACCAGCACCTCACTCTTTATAAAACTTCTGCTCGTGTCTTTAGAAAGTAATCAAGTGCAGGTGGGTGATACCAGGAGCTTCAACCTAGAGAGGCATGAAGAGAAACCAGCAGCACCTGCCCAGCCTCTGGCCAGGTCAGCCCTGCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238279 172 -   1764207 GTACAAAAGAGAAAACAAAAAGTAGACCAGTACCTCACTCTTTATAAAACTTCTGCTTGTGTCTTTAGAAAGTAATCAAGTGCAGGTGGGTGATACCAGGAGCTTCAACCTAGAGAGGCATGAAGAGAAACCAGCAGCACCTGCCCAGCCTCTGGCCAGGTCAGCCCTGCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      248051 172 -  16742782 GTACAAAAGAGAAAACAAAAAGTAGACCAGTACCTCACTCTTTATAAAACTTCTGCTTGTGTCTTTAGAAAGTAATCAAGTGCAGGTGGGTGATACCAGGAGCTTCAACCTAGAGAGGCATGAAGAGAAACCAGCAGCACCTGCCCAGCCTCTGGCCAGGTCAGCCCTGCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551819 172 -  91010382 GTACAAAAGAGAAAACAAAAAGTAGACTAGTACCTCACTCTTTATAAAACTTCTGCTTGTGTCTTTAGAAAGTAATCAAGTGCAGGTGGGTGATACCAGGAGCTTCAACCTAGAGAGGCATGAAGAGAAACCAGCAGCACCTGCCCAGCCTCTGGCCAGGTCAGCCCTGCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145188 172 -    438239 GTACAAAAGAGAAAACAAAAGGTAGACCAGTACCTCACTCTTTATAAAACTTCTGCTTGTGTCTTGAGAAAGTAATCAAGTGCAGGTGGGTGATACCAGGAGCTTCAACCTAGAGAGGCATGAAGAGAAACCAGCAGCACCTGCCCAGCCTCTGGCCAGGTCAGCCCTGCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179222 172 -    514179 GTACAAAAGAGAAAACAAAAAGTAGACCAGTACCTCACTCTTTATAAAACTTCTGTTTGTGTCTTTAGAAAGTAATCAAATGCAGGTGGGTGAGACCAGGAGCTTCAACCTAGAGAGGTATGAAGAGAAACCAGCAGCACCTGCCCAGCCCCTGGCCACGTCAGCCCTGCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203828113 161 + 204313951 GTACAA-AGAGAAAACAAAA---------GTACGTCCCTCTTTATAAAACTTCTGCTTATATCTTTGAAAAGTAGTCAAGCATAGGGATGTCAGACCAGGAGATTCAACCTAGAGAGGCATGGAGAGAAACCAGCGGCACCTGCCCAGCCTCTGGCC-GGCCAGCCCTGCCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15993944 161 +  16417988 GTACAA-AGAGAAAACAAAA---------GTACGTCCCTCTTTATAAAACTTCTGCTTATATCTTTGAAAAGTGATCAACTGTAGGGATGTGAGACCAGGAGATTCAACCTAGAGAGGCATGGAGAGAAACCAGCAGCACCTGCGCAGCCTCTGGCC-AGCCGGCCCTGCCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       74123 170 +    298490 GTACAA-AGAGAAAACAAAGAGTAGACCTGTACCTCCCTCTTTATGAAACGTCTGCTTACATCTTTGGAAAGTAACCAAGTGTAGGGATGTGAGACCAGGAGATTCAACCTAGAGAGGCACGGAGAGAAAGCAGCAGCACCCGCCCAGCCTCTGGCC-GGCCGGCCCTGTCA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25404633 168 -  25620257 GTACAA-AGAGAAAACAGAG--TAGACCTGTACCTCCCTCTTTATGAAACGTCTGCTTACATCTCTGGAAAGTAATCAAGTGTAGGGGTGTGAGACCAGGAGATTCAACCTACAGAGCTGTGGAGAGAAACCAGCGGCACCTGCCCAGCCTCTGGGT-GGCCGGCCCTGCCA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11705644 156 +  42124431 GCACAA-GGAGAAAACAAGA-GCAGACCATGGTCTCCCCATCCA-GAAACTCCTATTTATATTTCTGGAAAGTAAT-AAAAGTGATTAGATGAGA---------TCGAGCCATGGAGCAGTGATGTGAAGCTCTCTGGCGCTGCCCAGCCCC---GCAGGCAGGTCCTGTCA
i canFam3.chr34            C 0 I 374
e otoGar3.GL873745           1858449 273 -   2165740 I

a score=850556.000000
s hg38.chr5_KI270793v1_alt     45859 92 +    126136 AGGTTTTGCTGTTCATTCCTCCTTTCAGAAACA-----GGTATGCGCGCATCTCTGTATTCATTTTGTTTTCCTTTTGCACCAAGCAGCATTTCCCT
s panTro5.chr5             181313219 92 - 181907262 AGGTTTTGCTGTTCATTCCTCCTTTCAGAAACA-----GGTATGCGCGCATCTCTGTATTCATTTTGTTTTCCTTTTGCACCAAGCAGCATTTCCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183034012 92 - 183735486 AGGTTTTGCTGTTCATTCCTCCTTTCAGAAACA-----GGTATGCGCGCATCTCTGTATTCATTTTGTTTTCCTTTTGCACCAAGCAGCATTTCCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120647 92 +    698298 AGGTTTTGCTGTTCATTCCTCCTCTCAGAAACA-----GGTATGCGCGCATCTCTGTATTCATTTTGTTTTCCTTTTGCACCAAGCAGTATTTCCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545872 97 - 121039945 AGGTTTTGCTGTTCATTCCTCCTTTCAGAAACAGGTCTGGTATGCACGCATCTCTGTATTCATTTTGTTTTCCTTTTGCACCAAGCAGCATTTCCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502890 97 - 180051392 AGGTTTTGCTCTTCACTCTTCCTTTCAGAAACAGGTCTGGTATGTGCTCATCTCTGTATTCATTTTCTTTTCCTTTTGCACCAAGCATCATTTCCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235568 97 - 181584905 AGGTTTTGCTCTTCACTCTTCCTTTCAGAAACAGGTCTGGTATGCGCTCATCTCTGTATTCATTTTCTTTTCCTTTTGCACCAAGCAGCATTTCCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238451 97 -   1764207 AGGTTTTGCTCTTCACTCTTCCTTTCAGAAACAGGTCTGGTATGCGCTCATCTCTGTATTCATTTTCTTTTCCTTTTGCACCAAGCAGCATTTCCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      248223 97 -  16742782 AGGTTTTGCTCTTCACTCTTCCTTTCAGAAACAGGTCTGGTATGCGCTCATCTCTGTATTCATTTTCTTTTCCTTTTGCACCAAGCAGCATTTCCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90551991 97 -  91010382 AGGTTTTGCTCTTCACTCTTCCTTTCAGAAACAGGTCTGGTATGCGCTCATCTCTGTATTCATTTTCTTTTCCGTTTGCACCAAGCAGCATTTCCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145360 97 -    438239 AGGTTTTGTTCTTCACTCTTCCTTTCAGAAACAGGTCTAGTACGTGCTCATCTCTGTATTCACTTTCTTTTCCTTTTGCACCAAGCAGCATTTCCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179394 97 -    514179 AGGTTTTGCTGTTCACTCTTCCTTTCAGAAACAGGTCTGGTATGCGCTCATCTCTGTATTCATTTTCTTTTCCTTTTGCACCAAGCAGCATTTCCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203828274 96 + 204313951 GTATTTTGCTGTTCATTCCTCCTCTCAG-GGCAGCTCTGCTGTGTGCTCATCTTTGTTTTCATTTTCTTTTCCTTTTGCACCAAACAGCGTTTCCCT
i calJac3.chr2             C 0 I 2
s saiBol1.JH378155          15994105 96 +  16417988 GTATTTTGCTGCTCATTCCTCCTTTCAG-GGTCGGTCTGGTGTGCTCTCATCTTTGTCTTCATTTCCTTTTCCTTTTGCACCAGGCAGCGTTTCCCT
i saiBol1.JH378155         C 0 I 2
s cebCap1.NW_016108158v1       74293 96 +    298490 GCGCTTTGCTGCTCATTCCTCCTTTCAG-GGCAGGTCTGGTGTGTGCTCATCTTTGTCTTCACTTTCTTTTCCTTTTGCACCAGGCAGCGTTTCCCT
i cebCap1.NW_016108158v1   C 0 I 2
s aotNan1.NW_018503740v1    25404801 96 -  25620257 GGGTTTTGCTGCTCATTCCTGCTTTCAG-GGCAGGTCTGGTGTGTGCTCATCTCTGTCTTCGTTTTCTTTTCCTTCTGCACCAGGCAGCATTTCCCT
i aotNan1.NW_018503740v1   C 0 I 1297
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11705800 374 +  42124431 I

a score=31446.000000
s hg38.chr5_KI270793v1_alt     45951 7 +    126136 TT--GTCTG
s panTro5.chr5             181313311 7 - 181907262 TT--GTCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183034104 7 - 183735486 TT--GTCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120739 7 +    698298 TT--GTCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545969 7 - 121039945 GT--GTCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502987 9 - 180051392 CCCTGTCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235665 9 - 181584905 GTCTGTCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238548 9 -   1764207 GTCTGTCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      248320 9 -  16742782 GTCTGTCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90552088 9 -  91010382 GTCTGTCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145457 8 -    438239 GTC-GTCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179491 9 -    514179 GTTTGTCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203828372 7 + 204313951 --CTGTCtg
i calJac3.chr2             I 2 I 1287
s saiBol1.JH378155          15994203 7 +  16417988 --CTGTCTG
i saiBol1.JH378155         I 2 C 0
s cebCap1.NW_016108158v1       74391 7 +    298490 --CTGTCTG
i cebCap1.NW_016108158v1   I 2 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e canFam3.chr34             11705800 374 +  42124431 I

a score=33723.000000
s hg38.chr5_KI270793v1_alt     45958 5 +    126136 TGGCT
s panTro5.chr5             181313318 5 - 181907262 CGGCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183034111 5 - 183735486 CGGCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120746 5 +    698298 CGGCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545976 5 - 121039945 CAGCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179502996 5 - 180051392 TGGCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235674 5 - 181584905 TGGCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238557 5 -   1764207 TGGCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      248329 5 -  16742782 TGGCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90552097 5 -  91010382 TGGCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145465 5 -    438239 TGGCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179500 5 -    514179 CGGCT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          15994210 5 +  16417988 CAGCt
i saiBol1.JH378155         C 0 I 1280
s cebCap1.NW_016108158v1       74398 5 +    298490 CAGCT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11705800 374 +  42124431 I

a score=306253.000000
s hg38.chr5_KI270793v1_alt     45963 50 +    126136 CGTTTTCCTCACCAACTGAAAATGGCAGAGGGTTTCGTCCCTGAGTTCCG
s panTro5.chr5             181313323 50 - 181907262 CGTTTTCCTCACCAACTGAAAATGGCAGAGGGTTTCGTCCCTGAGTTCCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183034116 50 - 183735486 CGTTTTCCTCACCAACTGAAAATGGCAGAGGGTTTCGTCCCTGAGTTCCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120751 50 +    698298 CGTTTTCCTCACCAACTGAAAATGGCAGAGGGTTTCATCCCTGAGTTCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120545981 50 - 121039945 CGTTTTCCTCATGAACTGAAAATGGCAGAGGGTTTCGTCCCTGAGTTCCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179503001 50 - 180051392 TGTTTTCCTCATGAACTGAAAATGGCAGAGGGTTTTGTCCCTGAGTTCCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235679 50 - 181584905 TGTTTTCCTCACGAACTGAAAATGGCAGAGGGTTTTGTCCCTGAGTTCCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238562 50 -   1764207 TGTTTTCCTCACGAACTGAAAATGGCAGAGGGTTTTGTCCCTGAGTTCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      248334 50 -  16742782 TGTTTTCCTCACGAACTGAAAATGGCAGAGGGTTTTGTCCCTGAGTTCCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90552102 50 -  91010382 CGTTTTCCTCACGAACTGAAAATGGCAGAGGGTTTTGTCCCTGCGTTCCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145470 50 -    438239 TGTTTTCCTCACGAACTGAAAATGGCAGAGGGTTTTGTCCCTGAGTTCCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179505 50 -    514179 CGTTTTCCTCACGAACTGAAAATGGCAGAGGGTTTTGTCCCTGAATTCCG
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       74403 40 +    298490 TGTTTTC--CACGCACTGAAAGTGGCAGAGCGTTTCATGCCG--------
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e otoGar3.GL873745           1858449 273 -   2165740 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11705800 374 +  42124431 I

a score=529641.000000
s hg38.chr5_KI270793v1_alt     46013 77 +    126136 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAACGCC--AGGTCCAACCAGCAGCTTGAAAATTTACCTCCAATA
s panTro5.chr5             181313373 77 - 181907262 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAACGCC--AGGTCCAACCAGCAGCTTGAAAATTTACCTCCAATA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183034166 77 - 183735486 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAACGCC--AGGTCCAACCAGCAGCTTGAAAATTTACCTCCAATA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120801 77 +    698298 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAACGCT--AGGCCCAACCAGCAGCTTGAAAATTTACCTCCAATA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120546031 77 - 121039945 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAACACC--AGGTCCAACCAGCAACTTGAAAAGTTACTTCCAATA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179503051 77 - 180051392 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAATGCC--AGGTCCAACCAGCAGCTTGAACATTTACCTCCAATA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235729 77 - 181584905 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAATGCC--AGGTCCAACCAGCAGCTTGAACATTTACCTCCAATA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238612 77 -   1764207 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAATGCC--AGGTCCAACCAGCAGCTTGAACATTTACCTCCAATA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      248384 74 -  16742782 GCTGCTTGTGCCTCCATCTAGAGCTT---CAACAAAATGCC--AGGTCCAACCAGCAGCTTGAACATTTACCTCCAATA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90552152 77 -  91010382 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAATGCC--AGGTCCAACCAGCAGCTTGAACATTTACCTCCAATA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145520 77 -    438239 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAATGCC--AGGTCCAACCAGCAGCTTGAACATTTACCTCCAATA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179555 77 -    514179 GCTGCTTGTGCCTCCATCTAGAGCTTCAACAACAAAATGCC--AGGTCCAACCAGCAGCTTGAACATTTACCTCCAATA
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       74443 50 +    298490 ---------------------------AGCAACAAAACGCC--AGGTCCAATCAGCAGCTCGAAGATTCACCTTCAGTA
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1858722 79 -   2165740 GCTGCTTATGATTCCACTTACCACTCCAATAACAAAATGTCATAAATCCAATCAGCATCTTGAGATTTCACCTTTAAAA
i otoGar3.GL873745         I 273 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11705800 374 +  42124431 I

a score=9555.000000
s hg38.chr5_KI270793v1_alt     46090 1 +    126136 A
s panTro5.chr5             181313450 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183034243 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120878 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120546108 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179503128 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235806 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238689 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      248458 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90552229 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145597 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179632 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       74493 1 +    298490 A
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1858801 1 -   2165740 A
i otoGar3.GL873745         C 0 I 328
s canFam3.chr34             11706174 1 +  42124431 A
i canFam3.chr34            I 374 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I

a score=1444719.000000
s hg38.chr5_KI270793v1_alt     46091 228 +    126136 CAAAGTTACTAATTTACAAAGTGACTTTGGA--TGTAAACGTGCTGAAA-------ACTTACAACTACTAATGGTGTGTGTGTGTTCACCCTCCTCAAATCCCATGC--TTCCCCTCCCACCCATGTCCTC----GCTGTGGCCGCAAAGGTCCGGAATCCTCTCGCCTTCTGCTGTGACTTGGGCGGCTCATGTCTACATCCCACAGACAGGCCCTGCCGTGCACAGCTGAAACTTGAACAC
s panTro5.chr5             181313451 228 - 181907262 CAAAGTTACTAATTTACAAAGTGACTTTGGA--TGTAAACGTGCTGAAA-------ACTTACAACTACTCATGGTGTGTGTGTGTTCATCCTCCTCAAATCCCAGGC--TTCCCCTCCCACCCATGTCCTC----GCTGTGGCCGCAAAGGTCCGGAATCCTCTCGCCTTCTGCTGTGACTTGGGCAGCTCATGTCTACATCCCACAGACAGGCCCTGCCGTGCACAGCTGACACTTGAACAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183034244 228 - 183735486 CAAAGTTACTAATTTACAAAGTGACTTTGGA--TGTAAACGTGCTGAAA-------ACTTACAACTACTCATGGTGTGTGTGTGTTCACCCTCCTCAAATCCCATGC--TTCCCCTCCCAGCCATGTCCTC----GCTGTGGCCGCAAAGGTCCGGAATCCTCTCGCCTTCTGCTGTGACTTGGGCAGCTCATGTCTACATCCCACAGACAGGCCCTGCCGTGCACAGCTGACACTTGAACAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      120879 228 +    698298 CAAAGTTACTAATTTACAAAGTGACTTTGGA--TGTAAACGTGCTGAAA-------ACTTACAACTACTCATGGTGTGTGTGTGTTCACCCTCCTCAATTCCCATGC--TTCCCCTCCCACCCATGTCCTC----GCTGTGGCCGCAAAGGTCCGGAATCCTCTCGCCTTCTGCTGTGACTTGGGCAGCTCATGTCTACATCCCACAGACAGGCCCTGCCGTGCACAGCTGAAACTTGAACAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120546109 227 - 121039945 CAAACTTACTAATTTACAAAGTGACTTTGGA--TGTAAACGTGCTAAAA-------ACTTACAACTATGAATGGTGTATATGTGTTCACCCTCCTCAAATCCGATGC--TTCCCCTCCCACCCATGTCCTC----ACTGTGGCCGCAAAGGTCTGGAATCCTCTCACCTTCTGCT-TGACTTGGGCAGCTCATGTGTCCATCCCACAGACAGGCCCTGCCCTCCACAGCTGAAACTTGAAGAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179503129 228 - 180051392 CAAAGTTACTAATTTCCTAAGTGACTTTGGA--TGTAAACGTGCTAAAA-------ACTTACAACTACGCATGGTGTATGTGTGTTCACCCTCCTCAATTCCCATGC--TTCCCCGCCCACCCGTGTCCTC----GCTGTGGCCGCAAAAGTCCGGAATCCTCTCGCCTTCTGAGGTGACTTGGGCAGCTCGGGTCTGCACCACGCAGACAGGCCCTGCCATCCACAGCTGAAACGTGAAGAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181235807 228 - 181584905 CAAAGTTACTAATTTCCTAAGTGACTTTGGA--TGTAAACGTGCTGAAA-------ACTTACAACTACGCATGGTGTATGTGTGTTCACCCTCCTCAATTCCCATGC--TTCCCCGCCCACCCGTGTCCTC----GCTGTGGCCGCAAAAGTCCGGAATCCTCTCGCCTTCTGAGGTGACTTGGGCAGCTCGGGTCTGCACCACGCAGACAGGCCCTGCCATCCACAGCTGAAACGTGAAGAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238690 228 -   1764207 CAAAGTTACTAATTTCCTAAGTGACTTTGGA--TGTAAACATGCTGAAA-------ACTTACAACTACGCATGGTGTATGTGTGTTCACCCTCCTCAATTCCCATGC--TTCCCCGCCCACCCGTGTCCTC----GCTGTGGCCGCAAAAGTCCGGAATCCTCTTGCCTTCTGAGGTGACTTGGGCAGCTCGGGTCTGCACCACGCAGACAGGCCCTGCCATCCACAGCTGAAACGTGAAGAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      248459 227 -  16742782 CAAAGTTACTAATTTCCTAAGTGACTTTGGA--TGTAAACGTGCTGAAA-------ACTTACAACTACGCATGGTGTATGTGTGTTCACCCTCCTCAA-ACCCATGC--TTCCCCGCCCACCCGTGTCCTC----GCTGTGGCCGCAAAAGTCCGGAATCCTCTCGCCTTCTGAGGTGACTTGGGCAGCTCGGGTCTGCACCACGCAGACACGCCCTGCCATCCACAGCTGAAACGTGAAGAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90552230 228 -  91010382 CAAAGTTACTAATTTCCTAAGTGACTTTGGA--TGTAAACGTGCTGAAA-------ACTTACAACTACGCATGGTGGATGTGTGTTCACCCTCCTCAAATCCCATGC--TTCCCCGCCCACCCGTGTCCTC----GCTGTGGCTGCAAAAGTCCGGAATCCTCTCGCCTTCTGAGGTGACTTGGGCAGCTCGGGTATGCACCACGCAGACAGGTCCTGCCGTCCACAGCTGAAACGTGAAGAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145598 228 -    438239 CAAAGTTACTAATTTCCTAAGTGACTTTGGA--TGTAAACGTGCTGAAA-------ACTTACAACTACGCATGGTGTATGTGTGTTCACCCTCCTCAAATCCCATGC--TTCCCCGCCCACCCGTGTCCTC----GCTGTGGCCGCAAAAGTCCGGAATCCTCTCGCCTTCTGAGGTGACTTGGGCAGCTTGGGTCTGCACCACGCAGACAGGCCCTGCCATCCACAGCTGAAACGTGAAGAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179633 228 -    514179 CAAAGTTACTAATTTACAAAGTGACTTTGGA--TGTGAACGTGCTGAAA-------ACTTACAACTAGGCATGGTGTAGGTGTATTCACCCTCCTCAAATCCCATGC--TTCCCTGCCCACCCGTGTCCTT----GCTGTGGCCGCAAAAGTCCGGAATCCTCTCGCCTTCTGAGGTAACTTGGGCAGCTCGGGTCTGCACCACGCAGACAGGCCCTGCCGTCCACAGCTGAAATGTGAAGAC
i colAng1.NW_012118799v1   C 0 I 19
s cebCap1.NW_016108158v1       74494 225 +    298490 CAAAGTTACTAATTTACAAAGTGACTTTGGA--TGTAAATGCACTGAAA-------GCTTA-GACTACCAATGATGTATGTGTGTTCA-CCTCCCCAAATTCCACGC--TTCCCTGCCCA-CCACGTCCTC----GCTGTGGCCGCAAAAGTCCAGAATCCTCACGCCTGCTGCAGTGACTTTGGCAGCTGATGTCTGGCCCAGGCAGACGGGCCCCAGCGTCCACAGCTGAAACGCGAAGGC
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1859130 190 -   2165740 CGAAGTTGTCGGTTTACAAAGTGAC--TGAG--TGGAAATGTGCTGAGA-------------GACGACTAGTGGGGCACATGTGTTGG----ATTCAAACTCCACAC--TTGACA------CTGTGGTCTCAGGGAGTGAGACCACAAAGGT---AGAGTTTTGCACCTT-TGCTCTGACTCTGG----TCAGGGCTGCAC----------AATCCTG------ACAGCTGAGATGCAAAGGC
i otoGar3.GL873745         I 328 C 0
s canFam3.chr34             11706175 221 +  42124431 CAGTGTTACTAAGTTGCGCAGTGATTTTGGGGTGGTAAATCTGCTAAAAAAAAAAAAAGTGCAATTATAAGTGGCAGGCATAT-TCAACTTTCCTCAAGTCCCACCCATTGCCCCGTCCACTCGGCTCCTCC---AGCGGGTTTTCAAAATGCCCAGAGTTTCACAGCTTCTGC----ACCTGCCCAGCTGGCAGCTCCCCGAGCCGGAACGCCCAGGGCCAGCATCAC--------------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I

a score=126116.000000
s hg38.chr5_KI270793v1_alt     46319 28 +    126136 TGAGGGTTGCCGAACCTGCCACGGAGAT
s panTro5.chr5             181313679 28 - 181907262 CGAGGGTTGCCGAACCTGCCACGGAGAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183034472 28 - 183735486 CGAGGGTTGCCGAACCTGCCACGGAGAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      121107 28 +    698298 CGAGGGTTGCCGAACCTGCCACTGAAAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120546336 28 - 121039945 CGAGGGTTGCGGAACCTGCCACGGAAAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179503357 26 - 180051392 --AGGGTTGGGGAACCTGCCCCGGAAAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181236035 26 - 181584905 --AGGGTTGGGGAACCTGCCCCGGAAAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238918 26 -   1764207 --AGGGTTGGGGAACCTGCCCCGGAAAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      248686 26 -  16742782 --AGGGTTGGGGAACCTGCCCCGGAAAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90552458 26 -  91010382 --AGGGTTGGGGAACCTGCCCCGGAAAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145826 26 -    438239 --AGGGTTGGGGAACCTGCCCCGGAAAT
i manLeu1.NW_012110441v1   C 0 C 0
s cebCap1.NW_016108158v1       74719 28 +    298490 CGAGGGTTGCAGAACCCGCCACGGAAAT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1859320 23 -   2165740 CCAGGGTTGTGGCA----CCATGGAAA-
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11706396 20 +  42124431 -TAGCGCTGA-----CTG-CATGAAAG-
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e colAng1.NW_012118799v1      179861 19 -    514179 I

a score=2400404.000000
s hg38.chr5_KI270793v1_alt     46347 334 +    126136 GCGTTACTTTGTTCATTCTCTTCCTGTTTTTCTAATTCTGTAGCAACCAGGAACACAAATGAATCTGATCTACATTAGTAAAGATACCCGTGTGAAGGTTTGGAAGTTGAAAA-----TATTAAATACCAGCAG-AATTTAAGAATTAAGAGCAAAGAAGGAAACGCCTTGGGCTTGGCATCACATGAATACCCTACCCGGGCAGAGCAAATGTAAAGAGATCTTTAAAACACACACTGGGAGGCAGGATGAAATTCAAAACACGGCAGAGCTTATTGGGGAAGGAA--ATTCTG-----------------CCACCAACTTAAGGATTATGTTAAAAGGA---------TGCTCACA----CACTGAGTTA
s panTro5.chr5             181313707 334 - 181907262 GCGTTGCTTTGTTCATTCTCTTCCTGTTTTTCTAATTCTGTAGCAACCAGGAACACAAATGAATCTGATCTACATTAGTAAAGATACCCATGTGAAGGTTTGGAAATTGAAAA-----TATTAAATACCAGCAG-AATTTAAGAATTAAGAGCAAAGAAGGAAACGCCTTGGGCTTGGCATCACATGAATACCCTACCCGGGCAGAGCAAATGTAAAGAGATCTTTAAAACACACACCGGGAGGCAGGATGAAATTCAAAACACGGCAGAGCTTATTGGGGAAGGAA--ATTCTG-----------------CCACCAACTTAAGGATTATGTTAAAAGGA---------TGCTTACA----CACTGAGTTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183034500 334 - 183735486 GCGTTGCTTTGTTCATTCTCTTCCTGTTTTTCTAATTCTGTAGCAACCAGGAACACAAATGAATCTGATCTACATTAGTAAAGATACCCGTGTGAAGGTGTGGAAGTTGAAAA-----TATTAAATACCAGCAG-AATTTAAGAATTAAGAGCAAAGAAGGAAACGCCTTGGGCTTGGCATCACATGAATACCCTACCCGGGCAGAGCAAATGTAAAGAGATCTTTAAAACACACACCGGGAGGCAGGATGAAATTCAAAACACGGCAGAGCTTATTGGGGAAGGAA--ATTCTG-----------------CCACCAACTTAAGGATTATGTTAAAAGGA---------TGCTCACA----CACTGAGTTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      121135 334 +    698298 GCATTACTTTGTTCATTCTCTTCCTGTTGTTCTAATTCTGTAGCAACCAGGAACACAAATGAATCTGATCTACATTAGTAAAGATACCCGTGTGAAGGTTTGGAAGTTGAAAA-----TATTAAATACCAGCAG-AATTTAAGAATTAAGAGCAAAGAAGGAAACGCCTTGGGCTTGGCATCACATGAATACCCCACCCGGGCAGAGCAAACGTAAAGAGATCTTTAAAACACACACCGGGAGGCAGGATGAAATTCAAAACACGGCAGAGCTTATTGGGGAAGGAA--ATTCTG-----------------CCACCAACTTAAGGATTATGTTAAAAGGA---------TGCTCACA----CACTGAGTTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120546364 333 - 121039945 GCGTTACTTTGGTCATTCTCTTCCTGTTTTTCTAATTCTGTAGCAACCAGGAACATAAATGAATCTGATCTACATTAGTAAAGACACCCATGTGAAGGTTTGGAAGTTGAAAA-----TATTAAATACCAGCAG-AATTTAAGAATTAAGAGCAAAGAAGGAAACGCCTTGGGCGTGGCATCACATGAATGCCCTACCCGGGCAGAGCAAATGCAAAGAGATCTTTAAAACACACACCGGGAGGCAGGATGAAATTCAAAACACGGCAGAGCTTACCGGGGAAGGAA--ATTCCG-----------------CCACCAACTTAAGGATTGTGTT-AAAGGA---------TGCTCACA----CACTGAGTTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179503383 334 - 180051392 GAGTTACTTTGTTCATTCTCTTCCTGAATTTCTAATTCTGTAGGAACCAGGAACACAAATGAATCTGATCTAGGTTAGTAAAGATCCGCGTGTGAATGTTTGAAAGTTGAAAA-----TATTAAATACCAGCCG-AATTTAAGAATTAAGAGCAAAGAAGGAAGCGCCTTGGTCTTGGCATTCCATGAATGCTCTACCTGGGCAGAGCAAACGTAAAGAGATCTTTAAAACACACACCGGGAGGCAAGACGAAATTCAAAACATGGTAGAGCTTATCGGAGAAGGAA--ATTCTG-----------------CTACCAACTTAAGGATCAAGTTAAAAGGA---------TGCTCACG----CACTGGGTTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181236061 334 - 181584905 GAGTTACTTTGTTCATTCTCTTCCTGAATTTCTAATTCTGTAGGAACCAGGAACACAAATGAATCTGATCTAGGTTAGTAAAGATCCGCGTGTGAATGTTTGAAAGTTGAAAA-----TATTAAATACCAGCCG-AATTTAAGAATTAAGAGCAAAGAAGGAAGCGCCTTGGTCTTGGCATTCCATGAATGCTCTACCTGGGCAGAGCAAACGTAAAGAGATCTTTAAAACACACACCGGGAGGCAAGACGAAATTCAAAACATGGCAGAGCTTATCGGAGAAGGAA--ATTCTG-----------------CTACCAACTTAAGGATCATGTTAAAAGGA---------TGCTCACA----CACTGGGTTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      238944 334 -   1764207 GAGTTACTTTGTTCATTCTCTTCCTGAATTTCTAATTCTGTAGGAACCAGGAACACAAATGAATCTGATCTAGGTTAGTAAAGATCCGCGTGTGAATGTTTGAAAGTTGAAAA-----TATTAAATACCAGCCA-AATTTAAGAATTAAGAGCAAAGAAGGAAGCGCCTTGGTCTTGGCATTCCATGAATGCTCTACCTGGGCAGAGCAAACATAAAGAGATCTTTAAAACACACACCGGGAGGCAAGACGAAATTCAAAACATGGCAGAGCTTATCGGAGAAGGAA--ATTCTG-----------------CTACCAACTTAAGGATCATGTTAAAAGGA---------TGCTCACG----CACTGGGTTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      248712 334 -  16742782 GAGTTACTTTGTTCATTCTCTTCCTGTTTTTCTAATTCTGTAGGAACCAGGAACACAAATGAATCTGATCTAGGTTAGTAAAGATCCGCGTGTGAATGTTTGAAAGTTGAAAA-----TATTAAATACCAGCCG-CATTTAAGAATTAAGAGCAAAGAAGGAAGCGCCTTGGTCTTGGCATTCCATGAATGCTCTACCTGGGCAGAGCAAACGTAAAGAGATCTTTAAAACACACACCGGGAGGCAGGACGAAATTCAAAACACGGCAGAGCTTATCAGAGAAGGAA--ATTCTG-----------------CTACCAACTTAAGGATCATGTTAAAAGGA---------TGCTCACG----CACTGGGTTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90552484 334 -  91010382 GAGTTACTTTGTTCATTCTCTTCCTGTTTTTCTAATTCTGTAGGAACCAGGAACACAAATGAATCTGATCTAGGTTAGTAAAGATCCGCGTGTGAATGTTTGAAAGTTGAAAA-----TATTAAATACCAGCCG-AATTTAAGAATTAAGAGCAAAGAAGGAAACGCCTTGGTCTTGGCGTTCCATGAATGCTCTACCTGGGCAGAGCAAATGTAAAGAGATCTTTAAAACACACACCGGGAGGCAGGACGAAATTCAAAACACGGCAGAGCTTATCGGAGAAGGAA--ATTCTG-----------------CCACCAACTTAAGGATCATGTTAAAAGGA---------TGCTCACG----CACTGGGTTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      145852 334 -    438239 GAGTTACTTTGTTCATTCTCTTCCTGTTTTTCTAATTCTGTAGGAACCAGGAACACAAATGAATCTGATCTAGGTTAGTAAAGATCCGCGTGTGAATGTTTGAAAGTTGAAAA-----TATTAAATACCAGCCG-CATTTAAGAATTAAGAGCAAAGAAGGAAGCGCCTTGGTCTTGGCATTCCATGAATGCTCTACCTGGGCAGAGCAAACGTAAAGAGATCTTTAAAACACACACCGGGAGGCAGGACGAAATTCAAAACACGGCAGAGCTTATCGGAGAAGGAA--ATTCTG-----------------CTACCGACTTAAGGATCATGTTAAAAGGA---------TGCTCACG----CACTGGGTTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      179880 334 -    514179 gaattaattaattagaaaaattaGAGTTTTTCTAATTCTGTAGGAACCAGGAACACAGATGAATCTGATTTAGGTTAGTAAAGATCCCCGTGTGAATGTTTGAAAGTTGAAAA-----TATTAAATACCAGCCG-AATTTAAGAATTAAGAGCAAAGAAGGAAATGCCTTGGTCTTGGCATTCCATGAATGCTCTACCTGGGCAGAGCAAATGTAAAGAGATCTTTAAAACACACACCAGGAGGCAGGACGAAATTCAAAACACGGCAGAGCTTATCGGAGACGGAA--ATTCTG-----------------CCACCAACTTAAGGATCATGTTAAAAGGA---------TGCTCATG----CATTGGGCTA
i colAng1.NW_012118799v1   I 19 C 0
s cebCap1.NW_016108158v1       74747 324 +    298490 GCGTTACTTTATTCATTCTCTTCCTGTTTTTCTAATTCTGTAGCAACCAGGAACACAA---------ATCTAGGTTAGTAAAGATACCCGTGTGAAGGTTTGGAAGTGGAAAA-----TACTAAATACCAGCTG-AATTTAAGAATTAAGAGCAAAGAAGGAAGCACCTTGTGCTTGGCAACACGCAAATGCTCTGCCTGGGCAGGGCAAACGT--AGAGGTCTTT-AAACACACAC-GGGAGGCACGATGGAATTCGAAACATGA-GGAGCTTATCGCAGAAGGAA--ACTCTG-----------------CCACCAACGTAAGGATCATGTTAAAACGA---------TGCTCACACACTCACTCAGTTA
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1859343 346 -   2165740 GCATCACTTTATTTACTCTCCTCTTCCCTCCCCAATTCTATGACAAACAGGAACATAAATGAAGCTGATTGAGGTTTGT-GAGATGCCTGTGTGAAGGTTCGGGAATTGAAAATACAGTATTAAGTAGAGGCAGAAATTTATGAATTAAAAGTCAAGAAGGGAATATACAATGCTTGGCGTCTCGTGAATGCCTTCATAGGGTAAGGCAAATACCAGGA-ATCTTTAAAACATATATAATGAGACCAGATCAAATTCAAAACAAGGCAGAGCTTATTTGAGGAAGAA--ATTCTG-----------------TCACCAATTTAAGGAT-ACATTAAAAGGATCCAATATTTGCTCATG----CACTCAATTA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11706416 333 +  42124431 ACATCACGGTATTTTTTCTCTTCCTGCTTTT-TAATTCTGTAGCAAACAAGAGCATAA--------------------------TACCCGTGTGAAGGTTCAGGAGTTGGAAA-----TATTAAGTATCAGCAGAAACGAAAGAATTAAGAGCAGAGAAGGGAACGCCATACGTGCGGTGTCACACGAACGCCCTAACGAGGCAGAGCGAATGTAAAGAAATTTTTAA---ACATGTAACGAGACTGGCTGACATTCCAAACATGAATGAAACTCTATGAAAAGGAAGGACTCTATGAAAGGAAGAAACTGCCCGCCCACCTGAGGGCTAAGGTGGGAGGACACGGTGCTGGCTCAGA----CGCTCAGTTA
i canFam3.chr34            C 0 I 3218
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I

a score=1358702.000000
s hg38.chr5_KI270793v1_alt     46681 219 +    126136 ACACCTGGGCTCTCATG--------TGGTGGACCCCTGGCGGGCCCCTGCTGGGATCCTGGGGCTTTGCTGAAGATTCTTA-TTTGCAAAGTGAAGCCAC------------CTTtgagcacctgctgtgtacccagctctgccttgggtgtgagggaacaaccgggctgtggccccgctgctgttagggagctc--cagacagggtcgaggcc-acctacaagcaaacgactctgctcagcc
s panTro5.chr5             181314041 219 - 181907262 ACACCTGGGCTCTCATG--------TGGTGAACCCCTGGCGGGCCCCTGCAGGGATCCTGGGGCTTTGCCGAAGATTCTTA-TTTGCAAAGTGAAGCCAC------------CTTtgagcacctgctgtgtacccagctctgccttggttgtgagggaacaacCAGGCTGTGGCCCCGCTGCTGTTAGGGAGCTC--CAGACAGGGTCGAGGCC-GCCTACAAGCGAACGACTCTGCTCAGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183034834 219 - 183735486 ACACCTGGGCTCTCATG--------TGGTGAACCCCTGGCGGGCCCCTGCAGGGATCCTGGGGCTTTGCCGAAGATTCTTA-TTTGCAAAGTGAAGCCAC------------CTTtgagcacctgctgtgtacccagctctgccttggttgtgagggaacaacCAGGCTGTGGCCCCGCTGCTGTTAGGGAGCTC--CAGACAGGGTCGAGGCC-GCCTACAAGCGAACGACTCTGCTCAGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      121469 219 +    698298 ACACCTGGGCTCTCATG--------TGGTGAACCCCTGGCGGGCACCTGCAGGGATCCTGGGGCTTTGCTGAAGATTCTTA-TTTGCAAAGTGAAGCCAC------------CTTtgagcacctgctgtgcacccagctctgccttgggtgtgagggaacaacCAGGCTGTGGCCCCGCTGCTGTTAGGGAGCTC--CAGACAGGGTCGAGGCT-GCCTACAAGCGAACGACTCTGCTCAGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120546697 218 - 121039945 ACACCTGTGCTCTCATG--------TGGTGAACCCCTGGCGGGCCCCTGCAGGGATCCTGGGGCTTTGCCAAAGATTCTTA-TTTGCAAAGTGAAGCCAC------------CTTtgagcacctgctgtgcacccagctctgccttgggtgtgagggaacaaccaggctgtggccccactgctgttagggagcgc--cagac-gagtagaggCC-GCCTGCAAGCGAACGACCCTGCTCAGCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179503717 218 - 180051392 ACACCTGTGCTCTCATG--------CGGTGAAC-TCTGGCGGGCCCCTGCACGGATCCTGGGGCTTTGCCAAAGATTCTTA-TTTGCAAAGCAAAGCCAC------------CTTtgagcacctattgtgcacccagctctgccttgggtgtgagggaACAAGTGGGCCGTGGCCCTGCTGCTGTGGAGGAGCTC--CAGGCTGGGTTGAGGCC-GCCTGCAAGCCTACAACCCTGTTCTGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181236395 218 - 181584905 ACACCTGTGCTCTCATG--------CGGTGAAC-TCTGGCGGGCCCCTGCACGGATCCTGGGGCTTTGCCAAAGATTCTTA-TTTGCAAAGCAAAGCCAC------------CTTTGAGCACCTATTGTGCACCCAGCTCTGCCTTGGGTGTGAGGGAACAAGTGGGCCGTGGCCCTGCTGCTGTGGAGGAGCTC--CAGGCTGGGTTGAGGCC-GCCTGCAAGCCTACAACCCTGTTCTGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      239278 218 -   1764207 ACACCTGTGCTCTCATG--------CGGTGAAC-TCTGGCGGGGCCCTGCACGGATCCTGGGGCTTTGCCAAAGATTCTTA-TTTGCAAAGCAAAGCCAC------------CTTtgagcacctattgtgcacccagctctgccttgggtgtgagggaACAAGTGGGCCGTGGCCCTGCTGCTGTGGAGGAGCTC--CAGGCTGGGTTGAGGCC-GCCTGCAAGCCTACAACCCTGTTCTGCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      249046 218 -  16742782 ACACCTGTGCTCTCATG--------CGGTGAAC-TCTGGCGGGCCCCTGCACGGATCCTGGGGCTTTGCCAAAGATTCTTA-TTTGCAAAGCGAAGCCAC------------CTTtgagcacctattgtgcacccagctctgccttgggtgtgagggaACAAGTGGGCCGTGGCCCTGCTGCTGTGGAGGAGCTC--CAGGCTGGGTTGAGGCC-GCCTGCAAGCCTACAACCCTGTTCTGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90552818 218 -  91010382 ACACCTGTGCTCTCATG--------TGGTGAAC-TCTGGCGGGCCCCTGCACGGATCCTGGGGCTTTGCCAAAGATTCTTA-TTTGCAAAGCGAAGCCAC------------CTTTGAGCACCTATTGTGCACCCAGCTCTGCCTTGGGTGTGAGGGAACAAGTGGGCCGTGGCCCTGCTGCTGTGGAGGAGCTC--CAGGCTGGGTTGAGGCT-GCCTGCAAGCCAATGACCCTGTTCTGCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      146186 218 -    438239 ACACCTGTACTCTCATG--------CAGTGAAC-TCTGGCGGGCCCCTGCACGGATCCTGGGGCTTTGCCAAAGATTCTTA-TTTGCAAAGCGAAGCCAC------------CTTtgagcacctattgtgcacccagctctgccttgggtgtgagggaACAAGTGGGCCGTGGCCCTGCTGCTGTGGAGGAGCTC--CAGGCTGGGTTGAGGCC-GCCTGCAAGCCTACAACCCTGTTCTGCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      180214 219 -    514179 ACACCTGTGCTCTCATG--------TGGTGAACTTCTGGTGGGCCCCTGCTCGGATCCTGGAGCTTTGCCAAAGATTCTTA-TTTGCAAAGCGAAGCCAC------------CTTtgagcacctattgtgcacccagctctgccttgggtgtgagggaACAAGTGGGCCATGGCCCCGCTGCTGTGGAGGAGCTC--CAGGCCGGGTTGAGGCC-GCCTGCAAGCCAACGACCCTGTTGTGCC
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       75071 227 +    298490 ACGCGTGTGCTCTCGTGCGCGCCTACGGGGAACCCCTAGTGGGCCCCTGCACAGATCCTGGGACTTTGCTGAAGATTTTTC-TTTGCGAAGTGAAGCCAC------------CTTtgagtacctactgtgcacccagctctgccttgggtgtgagggaacaagtgggctgcagcccccctgctgtcagggagccc--CCGAACGGGTCGAGGCC-TCCTGCACGCAGACATCCCTTCTCAGCC
i cebCap1.NW_016108158v1   C 0 I 27
s otoGar3.GL873745           1859689 190 -   2165740 CCTCCTGTGTCTGCACA--------CA-------TCT------------CAGCAGTTGTGAGGGTCTGGCAAAGATCCTTATTTTGCAAAGTGAAGCAGCTGATGCTGCATTTTCTGAGTACCTGGTGTGTGCCCAGC--------------------ACAAGAGAGCCACAGGA-----GCT-TTGGAGAGCTCAGCATCAAGGGTCACAGCCAGCCTGGGAGCAGCACTTCCCACCCAACT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=486.000000
s hg38.chr5_KI270793v1_alt     46900 1 +    126136 -t
s panTro5.chr5             181314260 1 - 181907262 -T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183035053 1 - 183735486 -T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      121688 1 +    698298 -T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120546915 1 - 121039945 -T
i nomLeu3.chr6             C 0 I 2562
s rheMac8.chr6             179503935 1 - 180051392 -T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181236613 1 - 181584905 -T
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      239496 1 -   1764207 -T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      249264 1 -  16742782 -T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90553036 1 -  91010382 -T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      146404 1 -    438239 -T
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      180433 1 -    514179 -T
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1859879 1 -   2165740 G-
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e cebCap1.NW_016108158v1       75298 27 +    298490 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=129370.000000
s hg38.chr5_KI270793v1_alt     46901 27 +    126136 ggaggcacagggCGCACGGCGCTCCCC
s panTro5.chr5             181314261 27 - 181907262 GGAGGCAGAGGGCGCACGGCGCTCCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183035054 27 - 183735486 GGAGGCACAGGGCGCACGGCGCTCCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      121689 27 +    698298 GGAGGCACAGGGCGCACGGCGCTCCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179503936 27 - 180051392 GGAGGCACAGGGTGTGCAGCGCTCCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181236614 27 - 181584905 GGAGGCACAGGGTGTGCAGCGCTCCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      239497 27 -   1764207 GGAGGCACAGGGTGTGCAGCGCTCCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      249265 27 -  16742782 GGAGGCACAGGGTGTGCAGTGCTCCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90553037 27 -  91010382 GGAGGCGCAGGGTGCACAGCGCTCCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      146405 27 -    438239 GGAGGCACAGGGTGTGCAGCGCTCCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      180434 27 -    514179 GGAGGCACAGGGTATGCAGCGCTCCCT
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1859880 26 -   2165740 GAATGCAGAGAG-GAGCAGAGCTCACC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e cebCap1.NW_016108158v1       75298 27 +    298490 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I
e nomLeu3.chr6             120546916 2562 - 121039945 I

a score=1136299.000000
s hg38.chr5_KI270793v1_alt     46928 205 +    126136 GGAACTGAGTGAGGAGTCCTGGGGCAGGGGAGGACTTGGAGGCCACTAGGTCAGATGTCCCTATCAT------------AGCCGGCACAGGGATTACCCTGGAGCTCACGGGAAGCTGGGGCCAAACCCGGACGGGGCAGGTTGAAGCCACATCAAGAAGAGGGCTGTGGAGGGAGCACCCAGAACCACACCCCGAGCCAAGGCCAGGATCACCCCC
s panTro5.chr5             181314288 205 - 181907262 GGAACTGAGTGAGGAGTCCTGGGGCAGGGGAGGACTTGGAGGCCACTAGGTCAGATGTCCCTATCAT------------AGCCGGCACGGGGATTACCCTGGAGCTCACGGGAAGCTGGGGACAAACCCAGACAGGGCAGGTTGAAGCCACATCAAGAAGAGGGCTGTGGAGGGAGCACCCAGAACCACACCCCGAGCCAAGGCCAGGATCACCCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183035081 205 - 183735486 GGAACTGAGTGAGGAGTCCTGGGGCAGGGGAGGACTTGGAGGCCACTAGGTCAGATGTCCCTATCAT------------AGCCGGCACGGGGATTACCCTGGAGCTCACGGGAAGCTGGGGCCAAACCCGGACAGGGCAGGTTGAAGCCACATCAAGAAGAGGGCTGTGGAGGGAGCACCCAGAACCACACCCCGAGCCAAGGCCAGGATCACCCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      121716 205 +    698298 GGAACTGAGTGAGGAGTCCTGGGGCAGGGGAGGACTTGGAGGCCACTAGGTCAGATGTCTCTATCAT------------AGCCGGCACAGGGATTACCCTGGAGCTCACGGGAAGCTGGGGCCAAGCCCGGACAGGGCAGGTTGAAGCCACATCAGGAAGAGGGCTGTGGAGGGAGCACCCAGAACCACACCCCGAGCCAAGGCCAGGACCACTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179503963 204 - 180051392 GGAACCAAGTGAGGAGTCCT-GGGCAGGGGAGGACTTGGAGGCCACTGGGGCAGATGTCCCTATCAT------------AGCCAGCACAGGGATTACCCTGGAGCTCACGGGAAACTGGGGCCAAACCTGGACTGGGCAGGTTGAAGCCACATCAGGAAGAGGGCTGTGGAGGGAGCACTCAGGACCACCCCCTGAGCCAAAACCAGGGTCACCCCC
i rheMac8.chr6             C 0 I 260
s macFas5.chr6             181236641 204 - 181584905 GGAACCAAGTGAGGAGTCCT-GGGCAGGGGAGGACTTGGAGGCCACTGGGGCAGATGTCCCTATCAT------------AGCCAGCACAGGGATTACCCTGGAGCTCACGGGAAACTGGGGCCAAACCTGGACTGGGCAGGTTGAAGCCACATCAGGAAGAGGGCTGTGGAGGGAGCACTCAGGACCACCCCCTGAGCCAAAACCAGGGTCACCCCC
i macFas5.chr6             C 0 I 260
s macNem1.NW_012012389v1      239524 204 -   1764207 GGAACCAAGTGAGGAGTCCT-GGGCAGGGGAGGACTTGGAGGCCACTGGGGCAGATGTCCCTATCAT------------AGCCAGCACAGGGATTACCCTGGAGCTCACGGGAAACTGGGGCCAAACCTGGACTGGGCAGGTTGAAGCCACATCAGGAAGAGGGCTGTGGAGGGAGCACTCAGGACCACCCCCTGAGCCAAAACCAGGGTCACCCCC
i macNem1.NW_012012389v1   C 0 I 284
s cerAty1.NW_012009470v1      249292 204 -  16742782 GGAACCAAGTGAGGAGTCCT-GGGCAGGGGAGGACTTGGAGGCCACTGGGGCAGATGTCCCTATCAT------------AGCCAGCACAGGGATTACCCTGGAGCTCACGGGAAGCTGGGGCCAAACCTGGACTGGGCAGGTTGAAGCCACATCAGGAAGAGGGCTGTGGAGGGAGCACTCAGGACCACCCCCTGAGCCAAAACCAGGGTCACCCCC
i cerAty1.NW_012009470v1   C 0 I 284
s chlSab2.chr4              90553064 204 -  91010382 GGAACCAAGTGAGGAGTCCT-GGGCAGGGGAGGACTTGGAGGCCACTGGGGCAGATGTCCCTATCAT------------AGCCAGCACAGGGATTACCCTGGAGCTCACGGGAAGCTGGGGCCAAACCTGGACTGGGCAGGTTGAAGCCACATCAGGAAGAAGGCTGTGGAGGGAGCACCCAGGACCACCCCCTGAGCCAAATCCAGGGTCACCCCC
i chlSab2.chr4             C 0 I 164
s manLeu1.NW_012110441v1      146432 204 -    438239 GGAACCAAGTGAGGAGTCCT-GGGCAGGGGAGGACTTGGAGGCCACTGGGGCAGATGTCCCTATCAT------------AGCCAGCACAGGGATTACCCTGGAGCTCACGGGAAGCTGGGGCCAAACCTGGACTGGGCAGGTTGAAGCCACATCAGGAAGAGGGCTGTGGAGGGAGCACTCAGGACCACCCCCTGAGCCAAAACCAGGGTCACCCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      180461 204 -    514179 GGAACCAAGTGAGGAGTCCT-GGGCAGGGGAGGACTTGGAGGCCACTGGGGCAGATGCCCCTATCAT------------AGCCAGCACAGGGATTACCCTGGAGCTCACGGGGAGCTGGGGCCAAACCCGGACTGGGCAGGTTGAAGCCACATCAGGAAGAGGGCTGTGGAGGGAGCACCCAGGACCACCCCCTGGGCCAAAGCCGGGGTCACCCCC
i colAng1.NW_012118799v1   C 0 I 232
s cebCap1.NW_016108158v1       75325 182 +    298490 GGAACCAAGTGAGGAGTCCTGGGGCTGGGGTGGACTTGAAGGCCACTGGGTCAGATGTCCCCATCGC------------AGCTGGCACAGGGATGCCCCCGGAACTCACAGGAGGCTGGGGCCAAACCCAGATGGGGCAGATGGAATCCACATGAGGAGGAGGGCTGTGGAGGCAATACCCAGGGCCACACCCC-----------------------
i cebCap1.NW_016108158v1   I 27 C 0
s otoGar3.GL873745           1859906 158 -   2165740 -----------Aagagttgtagggcaggaaaggacctggagaccat--agtcagacatcctcaccttctgggtcctggaggctggta----gttcttgcctaagctcacaGGAGGCAGAAG------------------GGTCAAAACTCGGTCAGGAAGGGGGCTGTGGGCAGAACACCGAGGA------CCTGGGCA------------------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I
e nomLeu3.chr6             120546916 2562 - 121039945 I

a score=89052.000000
s hg38.chr5_KI270793v1_alt     47133 13 +    126136 GAGCCAAGGCCAG
s panTro5.chr5             181314493 13 - 181907262 GAGCCAAGGCCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183035286 13 - 183735486 GAGCCAAGGCCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      121921 13 +    698298 GAGCCAAGGCCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179504427 13 - 180051392 GAGCCAAGGCCAG
i rheMac8.chr6             I 260 C 0
s macFas5.chr6             181237105 13 - 181584905 GAGCCAAGGCCAG
i macFas5.chr6             I 260 C 0
s macNem1.NW_012012389v1      240012 13 -   1764207 GAGCCAAGGCCAG
i macNem1.NW_012012389v1   I 284 C 0
s cerAty1.NW_012009470v1      249780 13 -  16742782 GAGCCAAGGCCAG
i cerAty1.NW_012009470v1   I 284 C 0
s chlSab2.chr4              90553432 13 -  91010382 GAGCCAAGGCCAG
i chlSab2.chr4             I 164 C 0
s manLeu1.NW_012110441v1      146636 13 -    438239 GAGCCAAGGCCAG
i manLeu1.NW_012110441v1   C 0 I 1139
s colAng1.NW_012118799v1      180897 13 -    514179 GAGCCAAGGCCAG
i colAng1.NW_012118799v1   I 232 C 0
s cebCap1.NW_016108158v1       75507 13 +    298490 CAGCCAACGCCAG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1860064 13 -   2165740 GAGCCAAGGCCTA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I
e nomLeu3.chr6             120546916 2562 - 121039945 I

a score=2084260.000000
s hg38.chr5_KI270793v1_alt     47146 491 +    126136  
s panTro5.chr5             181314506 491 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183035299 512 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      121934 491 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179504440 461 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181237118 461 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      240025 461 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      249793 461 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90553445 462 -  91010382  
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      180910 461 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       75520 456 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1860077 411 -   2165740  
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I
e nomLeu3.chr6             120546916 2562 - 121039945 I
e manLeu1.NW_012110441v1      146649 1139 -    438239 I

a score=231259.000000
s hg38.chr5_KI270793v1_alt     47637 53 +    126136 TTCTCTGCTCACCCTCACCCCAGCTTCATCTCag-------------------------------acctgctgggatcggattt
s panTro5.chr5             181314997 53 - 181907262 TTCTCTGCTCACCCTCACCCCAGCTTCATCTCag-------------------------------acctgctgggatcggattt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183035811 53 - 183735486 TTCTCTGCTCACCCTCACCCCAGCTTCATCTCag-------------------------------acctgctgggatcggattt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      122425 53 +    698298 TTCTCTGCTCACCCTCACCCCAGCTTCATCTCag-------------------------------acctgctgggatcggattt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120549478 53 - 121039945 ttttCTGCTCACCCTCACCCCAGCTTCATCTCAG-------------------------------acctgctgggatcggattt
i nomLeu3.chr6             I 2562 C 0
s rheMac8.chr6             179504901 84 - 180051392 TTCTCTGCTCACCCTCACCCCGGCTTCATCTCACTCTCCATCCTGGACTCAGCCCTTCTGTGCTCacccgctgggatcatattc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181237579 84 - 181584905 TTCTCTGCTCACCCTCACCCCGGCTTCATCTCACTCCCCATCCTGGACTCAGCCCTTCTGTGCTCacccgctgggatcatattc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      240486 84 -   1764207 TTCTCTGCTCACCCTCACCCCGGCTTCATCTCACTCCCCATCCTGGACTCAGCCCTTCTGTGCTCacccgctgggatcatattc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      250254 84 -  16742782 TTCTCTGCTCACCCTCACCCCGGCTTCATCTAACTCCCCATCCTGGACTCAGCCCTTCTGTGCTCacccgctgggatcatattc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90553907 84 -  91010382 TTCTCTGCTCACCCTCACCCCGGCTTCATCTCACTCCCCATCCTGGACTCAGCCCTCCTCTGCTCacccgctgggatcatattc
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      181371 29 -    514179 TTCTC-------------------------------------------------------TGCTCacccgctgggatcacattc
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       75976 52 +    298490 TTCTCCACTCACCCTCA-CCTGGCTTCACCTCGG-------------------------------acctgctgggattggattt
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1860488 49 -   2165740 TTCTGGGCATA-GCTCACCCCAGACTCAGCTCag-------------------------------acctgctga---cagagtt
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I
e manLeu1.NW_012110441v1      146649 1139 -    438239 I

a score=1173752.000000
s hg38.chr5_KI270793v1_alt     47690 174 +    126136 gggattgcgtggaaaatgtaattgaatctgggcagaacttgacatcataaccgtaatgaatgtttttatccgtgaaggctgtctctccatttattcagctctttaatttctttcagcgacattttatagataatgtcgtttgctaaattcagt-cataagtattttatggttttg
s panTro5.chr5             181315050 174 - 181907262 gggattgcgtggaaaatgtaattgaatctgggcagaacttgacatcataaccgtaatgaatgtttttatccgtgaaggctgtctctccatttattcagctctttaatttctttcagcgacattttatagataatgtcgtttgctaaattcagt-cataagtattttatggttttg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183035864 174 - 183735486 gggattgcgtggaaaatgtaattgaatctgggcagaacttgacatcataaccgtaatgaatgtttttatccgtgaaggctgtctctccatttattcagctctttaatttctttcagcgacattttatagataatgtcgtttgctaaattcagt-cgtaagtattttatggttttg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      122478 174 +    698298 gggattgcgtggaaaacgtaattgaatctgggcagaacttgacatcataaccgtaatgaatgtttttatccgtgaaggctgtctctccatttattcagctctttaatttctttcagcgacattttatagataatgtcgtttgctaaattcagt-cataagtattttatggttttg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120549531 165 - 121039945 gggattgcgtggaaactgtagttgaatctgggcagaatttgacatcataacagtaatgagtgttttaatccgtgaagtctgtctctccatttattcaggtctttaatttctttcagcgacattttatagatgatgtcttttgctaaatttagt-cataagtatttt---------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179504985 174 - 180051392 aggattgtatggaaactgtatttgaatctcggcagaatttgacatcataacagtaatgaatgttttaatctgtgttggctgtctctccatttattcaggtctttaatttctttcagcaacattttatagatgatgtcttttgctaaatttagt-cataagtattttatggttttg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181237663 174 - 181584905 aggattgtatggaaactgtatttgaatctgggcagaatttgacatcataacagtaatgaatgttttaatctgtgttggctgtctctccatttattcaggtctttaatttctttcagcaacattttatagatgatgtcttttgctaaatttagt-cataagtattttatggttttg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      240570 174 -   1764207 aggattgtatggaaactgtatttgaatctgggcagaatttgacatcataacagtaatgaatgttttaatctgtgttggctgtctctccatttattcaggtctttaatttctttcagcaacattttatagatgatgtcttttgctaaatttagt-cataagtattttatggttttg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      250338 174 -  16742782 gggattgtatggaaactgtatttgaatctgggcagaatttgacatcataacagtaatgaatgttttaatctgtgttggctgtctctccatttgttcaggtctttaatttctttcagcaacattttatagatgatgtcttttgctaaatttagt-cataagtattttatggttttg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90553991 174 -  91010382 gggattgtatggaaactgtatttgaatctgggcagaatttgacatcctaacagtaatgaatgttttaatctgtgacggctgtctctccatttattcaggtctttaatttctttcagcaacattttatagatgatgtcttttgctaaatttagt-cataagtattgtatggttttg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      147788 174 -    438239 gggattgtatggaaactgtatttgaatcggggcagaatttgacatcataacagtaatgaatgttttaatctgtgttggctgtctctccatttattcaggtctttaatttctttcagcaacattttatagatgatgtcttttgctaaatttagt-cataagtattttatggttttg
i manLeu1.NW_012110441v1   I 1139 C 0
s colAng1.NW_012118799v1      181400 174 -    514179 gggactgtatggaaactgtatttgaatctgggcagaatttgacatcataacagtaatgaatgttttaatctgtgacggctgtctctccatttattcaggtctttaatttctttcagaaacattttatagatgatgtcttttgctaaatttagt-cataagtattttatggtttgg
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       76028 174 +    298490 gggattgcgtggaagctgtagttgaatctgggcggaatttgacatcataacagtaatgaatgttttaatccgtgaaggctatatctccatttattcgggtctttaatttctttcagcgacattttatagatgatgtcttttgcttaatttagt-cgtaagtattttatgattttG
i cebCap1.NW_016108158v1   C 0 I 3582
s otoGar3.GL873745           1860537 169 -   2165740 gggctggccctgaatccacagccaaattagggcag-gtttgacacctgaacagaggtgaatgttccagtccatgaaggccatttccccatttattcaggtctctaatatc--tcagtgacttttcaaag---atttcttttataaaatttggcatgtatctttattaagtatttg
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=523591.000000
s hg38.chr5_KI270793v1_alt     47864 89 +    126136 atggta-ttataaactgaataatttaaatttttattttcagattatttgctgctagtatatagatacagaactgatttttgtttactgat
s panTro5.chr5             181315224 89 - 181907262 atggta-ttataaactgaataatttaaatttttattttcagattatttgctgctagtatatagatacataactgatttttgtgtactgat
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183036038 89 - 183735486 atggta-ttataaactgaataatttaaatttttattttcagattatttgctgctagtatatagatacataactgatttttgtgtactgat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      122652 89 +    698298 atggta-ttataaactgaataatttaaatttttattttcagattatttgctgctagtatatagatacataactgatttttgtgtactgat
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120549696 89 - 121039945 atggta-ttataaactgaataatttaaatttttatttttagattatttgctgctagtatatagatacataactgatttttgtgtactgat
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179505159 89 - 180051392 atggta-ttacaaactgaataatttaaatttttattttcagattatttgctgctagtatagagatacaaaactgatttttgtgtactgat
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181237837 89 - 181584905 atggta-ttacaaactgaataatttaaatttttattttcagattatttgctgctagtatagagatacaaaactgatttttgtgtactgat
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      240744 89 -   1764207 atggta-ttacaaactgaataatttaaatttttattttcagattatttgctgctagtatagagatacaaaactgatttttgtgtactgat
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      250512 89 -  16742782 atggta-ttacaaactgaataatttaaatttttattttcagattatttgctgctagtatatagatacaaaactgatttttgtgtactgat
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90554165 88 -  91010382 atggta-ttataaactgaataatttaaatttttattttcagatt-tttgctgctagtatatagatacaaaactgatttttgtgtactgat
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      147962 89 -    438239 atggta-ttacaaactgaataatttaaatttttattttcagattatttgctgctagtatatagatacaaaactgatttttgtgtactgat
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      181574 89 -    514179 atggta-ttataaactgaataatttaaatttttattttcagattatttgctgctagtatatagatacaaaactgatttttgtgtcctggt
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1860706 84 -   2165740 atagaatttaccattgaaataatctagctctggagtt-----ttctttgttga-aggattttgataaaaagtttaatttctttcacggat
i otoGar3.GL873745         C 0 I 3778
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e cebCap1.NW_016108158v1       76202 3582 +    298490 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=5866524.000000
s hg38.chr5_KI270793v1_alt     47953 1027 +    126136  
s panTro5.chr5             181315313 1027 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183036127 1027 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      122741 1027 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120549785 1030 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179505248 1026 - 180051392  
i rheMac8.chr6             C 0 I 93
s macFas5.chr6             181237926 1026 - 181584905  
i macFas5.chr6             C 0 I 51
s macNem1.NW_012012389v1      240833 1026 -   1764207  
i macNem1.NW_012012389v1   C 0 I 93
s cerAty1.NW_012009470v1      250601 1025 -  16742782  
i cerAty1.NW_012009470v1   C 0 I 92
s chlSab2.chr4              90554253 1024 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      148051 1026 -    438239  
i manLeu1.NW_012110441v1   C 0 I 93
s colAng1.NW_012118799v1      181663 1023 -    514179  
i colAng1.NW_012118799v1   C 0 I 51
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       76202 3582 +    298490 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=190985.000000
s hg38.chr5_KI270793v1_alt     48980 106 +    126136 tttattaaccttttcaaaaaacaacttttgtctttattgacttctctatttgttttataattcattagtatctca-tctttataatttttttccttctagtcccctc
s panTro5.chr5             181316340 106 - 181907262 tttattaaccttttcaaaaaacaacttttgtctttattgacttctctatttgttttataattcattagtatctca-tctttataatttttttccttctagtcccctc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183037154 106 - 183735486 tttattaaccttttcaaaaaacaacttttgtctttattgacttctctatttgttttataattcattagtatctca-tctttataatttttttccttctagtcccctc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      123768 106 +    698298 tttattaaccttttcaaaaaacaacttttgtctttattgacttctctatttgttttataattcattagtatctca-tctttataatttttttccttctagtcccctc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120550815 107 - 121039945 tttattaaccttttcaaaaaataacttttgtctttattgacttttctatttgttttataattcattagtatctcattctttataatttttttccttctagtcccctc
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181239003  43 - 181584905 tttactaacctgttcaaaaaacagcttttgtctttattgactt----------------------------------------------------------------
i macFas5.chr6             I 51 C 0
s chlSab2.chr4              90555277 102 -  91010382 tttactaacttgttcaaaaaacagcttttgtctttattgacttct----ctgttttataattcattagtatctca-tatttgtaatttttttccttctagttccctc
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      182737 106 -    514179 tttactaacctgttcaaaaaacagcttttgtctttactgacttctctagctgttttataattcattagtatctca-tatttgtaatttttttccttctggttccctc
i colAng1.NW_012118799v1   I 51 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       76202 3582 +    298490 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I
e manLeu1.NW_012110441v1      149077  93 -    438239 I
e cerAty1.NW_012009470v1      251626  92 -  16742782 I
e macNem1.NW_012012389v1      241859  93 -   1764207 I
e rheMac8.chr6             179506274  93 - 180051392 I

a score=4075405.000000
s hg38.chr5_KI270793v1_alt     49086  910 +    126136  
s panTro5.chr5             181316446  869 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183037260  869 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      123874  910 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120550922 1064 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179506367  798 - 180051392  
i rheMac8.chr6             I 93 C 0
s macFas5.chr6             181239046  797 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      241952  798 -   1764207  
i macNem1.NW_012012389v1   I 93 C 0
s cerAty1.NW_012009470v1      251718  864 -  16742782  
i cerAty1.NW_012009470v1   I 92 C 0
s chlSab2.chr4              90555379  815 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      149170  930 -    438239  
i manLeu1.NW_012110441v1   I 93 C 0
s colAng1.NW_012118799v1      182843  989 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25404897 1297 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       76202 3582 +    298490 I
e saiBol1.JH378155          15994215 1280 +  16417988 I
e calJac3.chr2             203828379 1287 + 204313951 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=4598798.000000
s hg38.chr5_KI270793v1_alt     49996 541 +    126136  
s panTro5.chr5             181317315 542 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183038129 542 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      124784 541 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120551986 531 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179507165 541 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181239843 541 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      242750 541 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      252582 540 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90556194 542 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      150100 540 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      183832 541 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203829666 524 + 204313951  
i calJac3.chr2             I 1287 C 0
s saiBol1.JH378155          15995495 526 +  16417988  
i saiBol1.JH378155         I 1280 I 915
s aotNan1.NW_018503740v1    25406194 527 -  25620257  
i aotNan1.NW_018503740v1   I 1297 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       76202 3582 +    298490 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=3158194.000000
s hg38.chr5_KI270793v1_alt     50537 417 +    126136 tgagataaagagagcacaggaaatcaccgctgtctctctgggaactaaaggacagtggtttccatgagaatccactcccaagctttactttcccttgagcaccatgagcttcaggtcctgagattttattttcctCTCATGggttcttttaaaagatgactgccatctctctattgagattctctgttcattcattgtgactatattttcctttaattccctgaacatattaaagagtctgtcttctaattttatcatctttcattatcttgaggcacacttctgttgactgctgtttctttcagatgtaggtcacattttcctgtttcttttcatgtttggatgcttttttgtCAGCCACAGTATATGACTGTTGTTGTCAATACGACACAGAGACTCTGGCTTACATTTTCTGTG
s panTro5.chr5             181317857 417 - 181907262 tgagataaagagagcatgggaaatcaccgctgtctctctgggaactaaaggacagtggtttccatgagaatccactcccaagctttactttcccttgagcaccatgagtttcaggtcctgagattctattttcctCTCATGggttcttttaaaagatgactgccatctctctactgagattctctgttcattcattgtgactatattttcctttaattccctgaacatattaaagagtctgtcttctaattttatcatctttcattatcttgaggcacacttctgttgactgctgtttctttcagatgtaggtcacattttcctgtttcttttcatgtctggatgcttttttgtCAGCCACAGTATATGACTGTTGTTGTCAATACGACACAGAGACTCTGGCTTACATTTTCTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183038671 417 - 183735486 tgagataaagagagcatgggaaatcaccgctgtctctctgggaactaaaggacagtggtttccatgagaatccactcccaagctttactttcccttgagcaccatgagtttcaggtcctgagattctattttcctCTCATGggttcttttaaaagatgactgccatctctctactgagattctctgttcattcattgtgactatattttcctttaattccctgaacatattaaagagtctgtcttctaattttatcatctttcattatcttgaggcacacttctgttgactgctgtttctttcagatgtaggtcacattttcctgtttcttttcatgtctggatgcttttttgtCAGCCACAGTATATGACTGTTGTTGTCAATACGACACAGAGACTCTGGCTTACATTTTCTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      125325 417 +    698298 tgagataaagagagcatgggaaatcaccgctgtctctctgggaactaaaggacagtggtttccatgagaatccactcccaagctttactttcccttgagcaccatgagtttcaggtcctgagattctattttcctCTCATGggttcttttaaaagatgactgccatctctctattgagattctctgttcattcattgtgactatattttcctttaattccctgaacatattaaagagtctgtcttctaattttatcatctttcattatcttgaggcacacttctgttgactgctgtttctttcagatgtaggtcacattttcctgtttcttttcatgtctggatgcttttttgtCAGCCACAGTATATGACTGTTGTTGTCAATATGACACAGAGACTCTGGCTTACATTTTCTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120552517 417 - 121039945 tgagataaagagagcatgggaaatcaccgccatctctctgggaccaaaaggacagtggtttccatgagaatccactcccaagctttacttttccttgagcaccatgagtttggggtcctgagattctattttcctCTCATGggttcttttaaaagatgactgccatctctctactgagattctctgttcattcattgtgactatattttcctttaattccctgaacatattaaagagtctgtcttctaattttatcatctttcattatcttgaggcacatttctgttgactgctatttctttcagatgtaggtcacattttcctgtttattttcatgtctggatgcttttttgtCAGCCACAGTATATGACTGTTGTTGTCAATATGGCACGGAGACTCTGGCTTACGTTTTCTGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179507706 415 - 180051392 tgagatagagagagcatgggaaatcactgctgtctctctcagaacaaaaggatggcagtttccatgagaatccactcccaagctttactttcccttgagcaccatgagtttggagtcctaagattctattttcctCTCATGGGTTATTTTAAAAGATGACTGGCatctctctaccaagattctctgttcattcattgtgactatattttcccttaattccctgaacatactaaagagtctgtcttctaattttatcatctttcattatcttgaggcacatttctgttgactgctgtttctttcagatgtaggtcacattttcctgtttcttttcatgtctggaagcttttttgtcagccacag--tatgactgttgttgtcaatacgacacagagactctggcttatgtttcctgtg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181240384 415 - 181584905 tgagatagagagagcatgggaaatcactgctgtctctctcagaacaaaaggacggcagtttccatgagaatccactcccaagctttactttcccttgagcaccatgagtttggggtcctaagattctattttcctCTCATGGGTTATTTTAAAAGATGACTGGCatctctctaccaagattctctgttcattcattgtgactatattttcctttaattccctgaacatactaaagagtctgtcttctaattttatcatctttcattatcttgaggcacatttctgttgactgctgtttctttcagatgtaggtcacattttcctgtttcttttcatgtctggaagcttttttgtcagccacag--tatgactgttgttgtcaatacgacacagagactctggcttgtgtttcctgtg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      243291 415 -   1764207 tgagatagagagagcatgggaaatcactgctgtctctctcagaacaaaaggatggcagtttccatgagaatccactcccaagctttaccttcccttgagcaccatgagtttggggtcctaagattctattttcctCTCATGGGTTATTTTAAAAGATGACTGGCatctctctaccaagattctctgttcattcattgtgactatattttcctttaattccctgaacatactaaagagtctgtcttctaattttatcatctttcattatcttgaggcacatttctgttgactgctgtttctttcagatgtaggtcacattttcctgtttcttttcatgtctggaagcttttttgtcagccacag--tatgactgttgttgtcaatatgacacagagactctggcttatgtttcctgtg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      253122 415 -  16742782 tgagatagagagagcatgggaaatcactgctgtctctctcagaacaaaaggacagcagtttccatgagaatccactcccaagctttactttcccttgagcaccgtgagtttggggtcctgagattctattttcctCTCATGGGTTATTTTAAAAGATGACTGGCatctctctaccgagattctctgttcattcattgtgactatattttcctttaattccctgaacatactaaagagtctgtcttctaattttgtcatctttcattatcttgaggcacatttctgttgactgctgtttctttcagatgtaggtcacattttcctgtttcttttcatgtctggaagcttttttgtcagccacag--tatgactgttgttgtcaatacgacacagagactctggcttatgtttcctgtg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90556736 415 -  91010382 tgagatagagagagcatgggaaatcactgctgtctctctcagaacaaaaggatggcagtttccatgagaatccactcccaagctttactttcccttgagcaccatgagtttggggttctgagattctattttcctCTCATGGGTTATTTTAAAAGATGACTGGCatctctctaccgagattctctgttcattcattgtgactatattttcctttaattccctgaacatgctaaagagtctgtcttctaattttatcatctttcattatcttgaggcatatttctgttgactgctgtttctttcagatgtaggtcacattttcctgttccttttcatgtctggaagcttttttgtcagccacag--tatgactgttgttgtcaatatgacacagagactctggcttatgtttcctgtg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      150640 415 -    438239 tgagatagagagagcatgggaaatcactgctgtctctctcagaacaaaaggacggcagtttccatgagaatccactcccaagctttactttcccttgagcaccgtgagtttggggtcctgagattctattttcCCCTCATGGGTTATTTTAAAAGATGACTGGCatctctctaccgagattctctgttcattcattgtgactatattttcttttaattccctgaacatactaaagagtctgtcttctaattttatcatctttcattatcttgaggcacatttctgttgactgctgtttctttcagatgtaggtcacattttcctgtttcttttcatgtctggaagcttttttgtcagccacag--tatgactgttgttgtcaatacgacacagagactctggcttatgtttcctgtg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      184373 417 -    514179 tgagatacagagagcatgggaaatcactgctgtctctctcagaacaaaaggacggcagtttctatgagaatgcactccaaagctttactttcccttgagcaccataagtttggggtcctgagattctattttcctCTCATGGGTTATTTTAAAAGGTGACTGGCatctctctactgagattctctgttcattcattgtgactatattttcctttaattccctgaacatactaaagagtctgtcttctaattgtatcatctttcattatcttgaggcacatttctgttgactgctgtttctttcagatgtaggtcacattttcctgtgtcttttcatgtctagaagcttttgtgtccgccacagtatatgcctgttgttgtgaatatgacacagagactctggctcatgttGCCTGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203830190 416 + 204313951 tgagataaagagagcatgggaaatcactgctgtctttccaggaataaaaggatggtggtttccacaagaatccactcccaagcttcactttcccttggacaccaggagtttggggtcctgaaattctattttcctttcaAGAATTATTTTGAAAAGTGATTATGatttctctgctgagattctctgttcatttattgtgactatactttcctttaattcctggaacatattaaagtccctgtcttctaattttatcgtctttcattagcttgaggcagatttctgttgactgctgtttctttcagctgtaggttacattttcctgtttcttttcatgcctggaagctttcctgtcag-caccgtatatggctgttgttgtcaatatgacacagagactctggattacatttcctgtg
i calJac3.chr2             C 0 I 785
s aotNan1.NW_018503740v1    25406721 416 -  25620257 tgagataaagagagcatgggaaatcactgctgtctttctgggaaaaagaggatgacggtttccacaagaatccactcccaagcttcactttcccttgggcaccaggagtttggggtcctgaaattctattttcctttcaAGAATTTTTTGAAAAAGTGATTACAatttctctgctgagattctctgttcattcattgtgactatactttcctttaattccctgaacatactaaagtccctgtcttctaatcttatcatctttcattagcttgaggcagatttctgttgactgctgtttctttcagctgtaggtcacattttcctgtttcttttcatgcctggaagcttttctgtcag-caccgtatatggctgttgttgtcaataggatacagagactctggattacatttcctgtg
i aotNan1.NW_018503740v1   C 0 I 1003
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       76202 3582 +    298490 I
e saiBol1.JH378155          15996021 915 +  16417988 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=638656.000000
s hg38.chr5_KI270793v1_alt     50954 78 +    126136 CTGGAAGATGTCACTCTCGCCCTTGCAGGCCACGTGCCTGTGCACTGTGACCACGTCCCACCTTCCCTTGTGGCAGTA
s panTro5.chr5             181318274 78 - 181907262 CTGGAAGATGTCACTCTCGCCGTTGCAGGCCATGTGCCTGTGCACTGTGACCACGTCCCACCTTCCCTTGTGGCAGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039088 78 - 183735486 CTGGAAGATGTCACTCTCGCCATTGCAGGCCATGTGCATGTGCACTGTGACCACGTCCCACCTTCCCTTGTGGCAGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      125742 78 +    698298 CTGGAAGATGTCACTCTCGCCCTTGCAGGCCACGTGCCTGTGCACTGTGACCATGTCCCACCTTCCCTTGTGGCAGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120552934 78 - 121039945 CTGGAAGATGTCACTCTTGCCCCTGCAGGCCACGTGCCTGTGCACTGTGGCCATGTCCCACCTACCCTTGTGGCAGTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508121 78 - 180051392 ctggaagatgtCACTCTTACCCTTGCAGGCCATGTGCCCATGCACTGTGGCCACGTTCCACCTTCCCTCATGGCAGTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181240799 78 - 181584905 ctggaagatgtCACTCTTACCCTTGCAGGCCATGTGCCCATGCACTGTGGCCATGTTCCACCTTCCCTCATGGCAGTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      243706 78 -   1764207 ctggaagatgtCACTCTTACCCTTGCAGGCCATGTGCCCATGCACTGTGGCCACGTTCCACCTTCCCTCATGGCAGTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      253537 78 -  16742782 ctggaagatgtCACTCTCACCCTCGCAGGCCATGTGCCCATGCACTGTGGCCACATTCCACCTTCCCTCATGGCAGTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557151 78 -  91010382 ctggaagatgtCACTCTCACCCTCGCAGGCCATGTGCCCATGCACTGTGGCCATGTTCCACCTTCCCTCATGGCAGTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151055 78 -    438239 ctggaagatgtCACTCTCACCCTCGCAGGCCATGTGCCCATGCACTGTGGCCACATTCCACCTTCCCTCATGGCAGTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      184790 78 -    514179 CTGAAAGATGTCACTCTCACCCTCGCAGGCCGTGTGCCCATGCACTGTGGCCGCGTTCCACCTTCCCTCATGGCAGTA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203831391 78 + 204313951 CTGGAAGATGTTGCTCTCACCCTCGGAGACCACACACCCATGCACTGTGGCCACGTCCCACCTTCCCTCACGGCAGCA
i calJac3.chr2             I 785 C 0
s saiBol1.JH378155          15996936 78 +  16417988 CTGGAAGATGTCACTTTCACCCTCCCAGACCACACACCCATGCACTGTGGCCACATCCCACCTTCCCTCATGGGGGAA
i saiBol1.JH378155         I 915 I 5
s aotNan1.NW_018503740v1    25408140 76 -  25620257 CTGGAAGATGTCACTTTCACCCTCCCAGACCATGCACCCACGCACTGTGGTCACATCCCACCTTCCCTCATGGCAG--
i aotNan1.NW_018503740v1   I 1003 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       76202 3582 +    298490 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=1036951.000000
s hg38.chr5_KI270793v1_alt     51032 122 +    126136 GCTGCTGCCTCTCTGCAGGGACCCTCAACATCTCCCCCAGGGTGCTCAGTCCAGGACAGGATTGAGATGCAATTTACACACAATGCTGAGGGCCCTGTCATCTGTGGCTCCCTCCTTTTGGG-
s panTro5.chr5             181318352 122 - 181907262 GCTGCTGCCTCTCTGCAGGGACCCTCAGCATCTCCCCCAGGGTGCTCAGTCCAGGACAGGATTGAGATGCAATTTACACACAATGCTGAGGGCCCTGTCATCTATGGCTCCCTCCTTTTGGG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039166 122 - 183735486 GCTGCTGCCTCTCTGCAGGGACCCTCAGCATCTCCCCCAGGGTGCTCAGTCCAGGACAGGATTGAGATGCAATTTACACACAATGCTGAGGGCCCTGTCATCTATGGCTCCCTCCTTTTGGG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      125820 122 +    698298 GCTGCTGCCTCTCTGCAGGGACCCTCAACATCTCCCCCAGGGTGCTCAGTCCAGGACAGGATTGAGATGCAATTTACACACAATGCTGAGGGCCCTGTCATCTGTGGCTCCCTCCTTTTGGG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120553012 106 - 121039945 GCTGCCACCTCTCTGCAGGGACCCTCAGCGTCTCCCCCAGGGTGCTCAGTCCAGGACAGGATTGAGATGCAATATACACACAGTGCTGAGGGCCCTGACATCTGTG-----------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508199 107 - 180051392 GCTGCCGCCTCTCTGCAGGGACCCTCAGCATCTCACCCAGGGTGCTCAGTCCAGGACAGGATTAAGATGCAATTTACACACAGTGCTGAGGGCCCTGTTGTCTGTGG----------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181240877 107 - 181584905 GCTGCCGCCTCTCTGCAGGGACCCTCAGCATCTCACCCAGGGTGCTCAGTCCAGGACAGGATTAAGATGCAATTTACACACAGTGCTGAGGGCCCTGTTGTCTGTGG----------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      243784 107 -   1764207 GCTGCCGCCCCTCTGCAGGGACCCTCAGCATCTCACCCAGGGTGCTCAGTCCAGGACAGGATTAAGATGCAATTTACACACAGTGCTGAGGGCCCTGTTGTCTGTGG----------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      253615 107 -  16742782 GCTGCCGCCTCTCTGCTGGGACCCTCAGCATCTCACCCAGGGTGCTCAGTCCACGACAGGATTAAGATGCAATTTACACACAGTGCTGAGGGCCCTGTTGTCTGTGG----------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557229 107 -  91010382 GCTGCCGCCTCTCTGCAGGGACCCTCAGCATCTCACCCAGGGTGCTCAGTCCAGGACAGGATTAAGATGCAATTTACACACAGTGCTGAGGGCCCTGTTGTCTGTGG----------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151133 107 -    438239 GCTGCCGCCTCTCTGCTGGGACCCTCAGCATCTCACCCAGGGTGCTCAGTCCAGGACAGGATTAAGATGCAATTTACACACAGTGCTGAGGGCCCTGTTGTCTGTGG----------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      184868 107 -    514179 GCTGCCGCCTCTCCGCAGGGACCCTCAGCATCTCACCCAGGGTGCTCAGTCCAGGACAGAATTAAGATGCAATTTACACACAGTGCTGAGGGCCCTGTTGTCTGTGG----------------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203831469 121 + 204313951 GCTGCCACCTCTCTGCAGGGACCCTCAGCATTTCCCACAGGATGCTCAGTCCAGGACAGGATTGAGATGGAATTTGCACACAGTGCAGAGGGCCCTGTCATCTGTGACTCCCTCCTTTTGG--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15997019 121 +  16417988 GCTGCTGCCTCTCTGCAGGAACCCTCAGCATTTCCCACAGGACACTCAGTCCAGGACGGGACTGCGATGGAATTTGCACACAGTGCTGAGGGCCCTGTCGTCTGTGGCTCTCTCCTTTTGG--
i saiBol1.JH378155         I 5 C 0
s cebCap1.NW_016108158v1       79784 122 +    298490 GCTGCCGCCTCTCTGCAGGGACCCTCAGTGTTTCCCACAGGACGCTCAGTCCAGGACAGGATTGAGATGGAACTTGTGCACAGTGCTGAGGGCCCTGTCGTCTGTGGCTTCCTCTTTTTGGG-
i cebCap1.NW_016108158v1   I 3582 I 1191
s aotNan1.NW_018503740v1    25408216 121 -  25620257 -CTGCCTCCTCTCTGCAGGGACCCTCAGCATTTCCCACAGGACACTTAGTCCAGGACAGGATTGAGATGGAATTTGCGCACAGTGCTGAGGGCCCTGTCATCTGTGGCTCCCTCCTTTTGG-G
i aotNan1.NW_018503740v1   C 0 I 1228
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=52860.000000
s hg38.chr5_KI270793v1_alt     51154 17 +    126136 GTTCCACCCTCCCTCCT
s panTro5.chr5             181318474 17 - 181907262 GTTCCACCCTCCCTCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039288 17 - 183735486 GTTCCACCCTCCCTCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      125942 17 +    698298 GTTCCACCCTCCCTCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120553118 10 - 121039945 -------CCTCCCTCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508306  9 - 180051392 --------CTCCCTCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181240984  9 - 181584905 --------CTCCCTCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      243891  9 -   1764207 --------CTCCCTCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      253722  9 -  16742782 --------CTCCCTCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557336  9 -  91010382 --------CTCCCTCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151240  9 -    438239 --------CTCCCTCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      184975  9 -    514179 --------CTCCCTCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203831590  7 + 204313951 GTTCCAC----------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15997140 17 +  16417988 GTTCCACTCTTCCTTCT
i saiBol1.JH378155         C 0 I 1212
e aotNan1.NW_018503740v1    25408337 1228 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       79906 1191 +    298490 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=175967.000000
s hg38.chr5_KI270793v1_alt     51171 30 +    126136 TTTGGGGTTCTAACCTTCCTTCTCTGGCCT
s panTro5.chr5             181318491 30 - 181907262 TTTGGGGTTCTAACCTTCCTTCTCTGGCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039305 30 - 183735486 TTTGGGGTTCTAACCTTCCTTCTCTGGCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      125959 30 +    698298 TTTGGGGTTCTAACCTTCCGTCTCTGGCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120553128 30 - 121039945 TTTGGGGTTCCAACCTTCCTTCTCTGGCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508315 30 - 180051392 TATGGGGTTCCACCCTTCCTTCTCTGGCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181240993 30 - 181584905 TATGGGGTTCCACCCTTCCTTCTCTGGCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      243900 30 -   1764207 TATGGGGTTCCACCTTTCCTTCTCTGGCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      253731 30 -  16742782 TATGGGGTTCCACCCTTCCTTCTCTGGCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557345 30 -  91010382 TATGGGGTTCCACCCTTCCTTCTCTGGCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151249 30 -    438239 TATGGGGTTCCACCCTTCCTTCTCTGGCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      184984 30 -    514179 TATGGGGTTCCACCCTTCCTTCTCTGGCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203831597 17 + 204313951 -------------TTTTCCTTCTCCAGCCT
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25408337 1228 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       79906 1191 +    298490 I
e saiBol1.JH378155          15997157 1212 +  16417988 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=48561.000000
s hg38.chr5_KI270793v1_alt     51201 8 +    126136 --CCTATGTG
s panTro5.chr5             181318521 8 - 181907262 --CCTATGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039335 8 - 183735486 --CCTATGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      125989 8 +    698298 --CCTATGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120553158 8 - 121039945 --CCTATGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508345 8 - 180051392 --CCTATGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241023 8 - 181584905 --CCTATGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      243930 8 -   1764207 --CCTATGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      253761 8 -  16742782 --CCTATGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557375 8 -  91010382 --CCTATGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151279 8 -    438239 --CCTATGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185014 8 -    514179 --CCTATGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203831614 8 + 204313951 CCCACATG--
i calJac3.chr2             C 0 I 1184
s saiBol1.JH378155          15998369 6 +  16417988 --CCTATG--
i saiBol1.JH378155         I 1212 I 3
e aotNan1.NW_018503740v1    25408337 1228 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       79906 1191 +    298490 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=214068.000000
s hg38.chr5_KI270793v1_alt     51209 20 +    126136 TCCAGCCAGAGAGACTGCAG
s panTro5.chr5             181318529 20 - 181907262 TCCAGCCAGTGAGACTGCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039343 20 - 183735486 TCCAGCCAGTGAGACTGCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      125997 20 +    698298 TCCAGCCAGAGAGACTGCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120553166 20 - 121039945 TCCAGCCAGTGAGACTGCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508353 20 - 180051392 TCCAGCCAGTGAGACTGCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241031 20 - 181584905 TCCAGCCAGTGAGACTGCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      243938 20 -   1764207 TCCAGCCAGTGAGACTGCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      253769 20 -  16742782 TCCAGCCAGTGAGACTGCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557383 20 -  91010382 TCCAGCCAGTGAGACTGCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151287 20 -    438239 TCCAGCCAGTGAGACTGCAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185022 20 -    514179 TCCAGCCAGTGAGACTACAG
i colAng1.NW_012118799v1   C 0 I 37
s calJac3.chr2             203832806 20 + 204313951 TCCAGCCAGTGAGGCTGCAG
i calJac3.chr2             I 1184 C 0
s saiBol1.JH378155          15998378 20 +  16417988 TCCAGCCAGTGAGGCTGCAG
i saiBol1.JH378155         I 3 C 0
s cebCap1.NW_016108158v1       81097 20 +    298490 TCCAGCCAGCGAGGCTGCAG
i cebCap1.NW_016108158v1   I 1191 C 0
s aotNan1.NW_018503740v1    25409565 20 -  25620257 TCCAGCCAGTGAGGCTGCAG
i aotNan1.NW_018503740v1   I 1228 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11706749 3218 +  42124431 I

a score=3352004.000000
s hg38.chr5_KI270793v1_alt     51229 445 +    126136 TGCTCTGCTGACAACACCCCCAGCTAGGTGACCAGGGCACACCCTCAGGTGTGAGCTGTGCGTgaagctcacccattgcagttcctgctttcaaaggctaccacactgagtctctgccatctctgtttgctctccattcacttccagtagtgttttatagtttttccagagcttataattattgttcacaggagggttgttctgatacaagcCATCTTGCTGTTTCTAGGGGAAAACTCCCCATGCTGTTTTCCTGTGGCCCAAGTGTTCTTCATAAAataaccaatggctgtttatgtttgctgatcgccttgctgggttttctctgcatgtctttgctccttttgttccatgccttcctcctggggtctctttccttggtgaagggcatgtctcgtacttatttcagggatggtctgtgagttttgtgtctcctttttggtct
s panTro5.chr5             181318549 445 - 181907262 TGCTCTGCTGACAACACCCCCAGCTAGGTGACCAGGGCGCACCCTCAGGTGTGAGCTGTGCGTGAAGCTCACCCATTGCAGTTCCTGCTTTCAAAGGCTGCCACACTGagtctctgccatctctgtttgctctccattcacttccagtagtgttttatagtttttccagagcttataattattgttcacaggagggttgttctgatacaagccatcttgccgttTCTAGGGGAAAACTCCCCATACTGTTTTCCTGTGGCCCAAGTTTTCTTCATAAAATAACCAATGGCTGTTTATGTTTGCTGATCGCCTTGCTGGGTTTTCTCTGCATGTCTTTGCTCCTTTTGTTCCATGCCTTCCTCCTGGGGTCTCTTTCCTTGGTGAAGGGCACATCTCATACTTATTTCAGGGATGGTCTGTGAGTTTTGTGTCTCCTTTTTGGTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039363 445 - 183735486 TGCTCTGCTGACAACACCCCCAGCTAGGTGACCAGGGCGCACCCTCAGGTGTGAGCTGTGCGTGAAGCTCACCCATTGCAGTTCCTGCTTTCAAAGGCTGCCACACTGagtctctgccatctctgtttgctctccattcacttccagtagtgttttatagtttttccagagcttataattattgttcacaggagggttgttctgatacaagccatcttgccgttTCTAGGGGAAAACTCCCCATGCTGTTTTCCTGTGGTCCAAGTTTTCTTCATAAAATAACCAATGGCTGTTTATGTTTGCTGATCGCCTTGCTGGGTTTGCTCTGCATGTCTTTGCTCCTTTTGTTCCATGCCTTCCTCCTGGGGTCTCTTTCCTTGGTGAAGGGCACATCTCATACTTATTTCAGGGATGGTCTGTGAGTTTTGTGTCTCCTTTTTGGTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126017 445 +    698298 TGCTCTGCTGACAACACCCCCAGCTAGGTGACCAGGGCACACCCTCAGGTGTGAGCTGTGCGTGAAGCTCACCCATTGCAGTTCCTGCTTTCAAAGGCTGCCACACTGagtctctgccatctctgtttgctctccattcacttccagtagtgttttatagtctttccagagcttataattattgttcacaggagggttgttctgatacaagcCATCTTGCTGTTTCTAGGGGAAAACTCCCCGTGCTGTTTTCCTGTGGCCCAAGTTTTCTTCATAAAATAACCAATGGCTGTTTATGTTTGCTGATCGTCTTGCTGGGTtttctctgcatgtctttgctccttttgttccatgccttcctcctggggtctctttccttggtgaaggggacgtctcgtacttatttcagggatggtctgtgagttttgtgtctccttcttggtct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120553186 445 - 121039945 TGCTCTGCTGACAACACCCCCAGCTAGGTGACCAGGGTGCACCCTCAGGTGTGAGCTGTGCATgaagctcacccattgcagttcctgctttcaaaggctgctgcactgagtctctgccatctctgtttgctctccactagcttccaatactgttatatagcttttccagagcttataattattgttcacaggagggttgttctgatacgagccatcctgccattTTGAGAGGAAAACTCACCATGCTGTTTTCCTGTGCCCCAAGTTTTCTTCATAAAATAACCAATGGCTGTTTATGTTTGCTGATCGGCTTGCTGGGTtttctctgcatgtctttgctgcttttgttccatgccatcctcctggggtctctttccttggggaagggcatgtctggtacttatttcagggatggtctgtgagttttgggtctcctttttggtct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508373 443 - 180051392 TGCTCTGCTGACGCCA-CCCCAGCTCGGTGACCAAGGTGCACCATCAGGTGTGAGCTGTACGTGAAGCTTGCCCACAGAAGTTCCTGCTTTCAAGGGCTGCCACACTGAGTCTCTGCCATCTTTGTTTGCTCTCCATTAGCTTCCAATAGTGTTTTATAGTTTTTCCAGAGCTTATAATTATTGTTCACGGAAAGGTTGTTCTGATACGAGCCACCCTGCCATTTCGAGAGGAAAACTCCCCATGCTGTTTTCCTGTG-CCCAAGTTTTCTTCCTAAAATAACCAATGGCTGTTTATGTTTGCTGATCAGCTTGCTGGGTTTTCTCTGCACGTCTTTGCTTCTTTTGTTCCATGCCTTCCTCCTGGGGTGTCTTTCCTTGGTGAAGGGCACGTCTCGTACTTATTTCAGGGATGGTCTGTGAGTTTTGTGTCTCCTTTTTGACCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241051 443 - 181584905 TGCTCTGCTGACACCA-CCCCAGCTCGGTGACCAAGGTGCACCATCAGGTGTGAGCTGTACGTGAAGCTCGCCCACAGAAGTTCCTGCTTTCAAGGGCTGCCACACTGAGTCTCTGCCATCTTTGTTTGCTCTCCATTAGCTTCCAATAGTGTTTTATAGTTTTTCCAGAGCTTATAATTATTGTTCATGGAAAGGTTGTTCTGATACGAGCCACCCTGCCATTTCGAGAGGAAAACTCCCCATGCTGTTTTCCTGTG-CCCAAGTTTTCTTCCTAAAATAACCAATGGCTGTTTATGTTTGCTGATCAGCTTGCTGGGTtttctctgcacgtctttgcttcttttgttccatgccttcctcctggggtgtctttccttggtgaagggcacgtctcgtacttatttcagggatggtctgtgagttttgtgtctcctttttgacct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      243958 443 -   1764207 TGCTCTGCTGACGCCA-CCCCAGCTCGGTGACCAAGGTGCACCATCAGGTGTGAGCTGTACGTGAAGCTCGCCCACAGAAGTTCCTGCTTTCAAGGGCTGCCACACTGAGTCTCTGCCATCTTTGTTTGCTCTCCATTAGCTTCCAATAGTGTTTTATAGTTTTTCCAGAGCTTATAATTATTGTTCACGGAAAGGTTGTTCTGATACGAGCCATCCTGCCATTTCGAGAGGAAAACTCCCCATGCTGTTTTCCTGTG-CCCAAGTTTTCTTCCTAAAATAACCAATGGCTGTTTATGTTTGCTGATCAGCTTGCTGGGTTTTCTCTGCACGTCTTTGCTTCTTTTGTTCCATGCCTTCCTCCTGGGGTGTCTTTCCTTGGTGAAGGGCACGTCTCGTACTTATTTCAGGGATGGTCTGTGAGTTTTGTGTCTCCTTTTTGACCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      253789 443 -  16742782 TGCTCTGCTGACGCCA-CCCCAGCTTGGTGACCAAGGTGCACCATCAGGTGTGAGCTGTACGTGAAGCTCGCCCACTGAAGTTCCTGCTTTCAAGGGCTGCCACACTGAGTCTCTGCCATCTTTGTTTGCTCTCCATTAGCTTCCAATAGTGTTTTATAGTTTTTCCAGAGCTTATAATTATTGTTCACGGAAAGGTTGTTCTGATACGCGCCATTCTGCCATTTCGAGAGGAAAACTCCCCATGCTGTTTTCCTGTG-CCCAAGTTTTCTTCCTAAAATAACCAATGGCTGTTTATGTTTGCTGATCAGCTTGCTGGGTTTTCTCTGCACGTCTTTGCTTCTTTTGTTCCATGCCTTCCTCCTGGGGTGTCTTTCCTTGGTAAAGGGCACATCTCATACTTATTTCAGGGATGGTGTGTGAGTTTTGTGTCTCCTTTTTGACCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557403 441 -  91010382 TGCTCTGCTGATGCCA-CCCCAGCTCGGTGACCAGGGTGCACTATCGGGTGTGAGCTGTACGTGAAGCTTGCCCACTGAA--TCCTGCTTTTGAGGGTTGCCACATTGAGTCTCTGCCATCTTTGTTTGCTCTCCATTAGCTTCCAATAGTGTTTTATAGTTTTTCTAGCGCTTATAATTATTGTTCACAGAAAGGTTGTTCTGATACGAGCCATCCTGCCATTTCGAGAGGAAAACTCCCCATGCTGTTTTCCTGTG-CCCAAGTTTTCCTCCTAAAATAACCAATGGCTGTTTATGTTTGCTGATCAGCTTGCTGGTTTTTCTCTGCATGTCTTTGCTTCTTTTGTTCCATGCCTTCCTCCTGGGGTGTCTTTCGTTGGTGAAGGACACGTCTCGTACTTATTTCAGGGACAGTCTGTGAGTTTTGTGTCTCCTTTTTGATCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151307 443 -    438239 TGCTCTGCTGACGCCA-CCCCAGCTCAGTGACCAAGGTGCACCATCAGGTGTGAGCTGTACGTGAAGCTCGCCCACTGAAGTTCCTGCTTTCAAGGGCTGCCACACTGagtctctgccatctttgtttgctctccattagcttccaatagtgttttatagtttttccagagcttataattattgttcacggaaaggttgttctgatacgcgccattctgccattTCGAGAGGAAAACTCCCCATGCTGTTTTCCTGTG-CCCAAGTTTTCTTCCTAAAATAACCAATGGCTGTTTATGTTTGCTGATCAGCTTGCTGGGTTTTCTCTGCATGTCTTTGCTTCTTTTGTTCCATGCCTTCCTCCTGGGGTGTCTTTCCTTGGTGAAGGGCACATCTCATACTTATTTCAGGGATGGTCTGTGAGTTTTGTGTCTCCTTTTTGACCT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203832826 433 + 204313951 TGCTCTGCTGATGCCACCCCCAGCTCGGTGGCCAGGGCACA------GGTGTGAGCTGTGTGTGAAGCTCGCCCATTGTGGTTCCTGCCTTCAA-GACTGCCACACTGTgtctctgccatctctgcttgctctccaatagcttccaagagtgttttatag-ttttccagagtttgtagtttctgttcatggga-ggtggttctgatagaagctatcctgccattTCGAGAGGAAACGC-CCCATGCTGTTTTCCTGTGCCCCACGTTTTCTTCGTAAAATCATCGGTGGCCGTTCATGTTTGCGGATAGGCTTGCCAGGTCTTCTCTGGGCGTCTTGGCCTCTTCTGCTCCCCTCCTTCCTCCAGGGCTG--TTTTCTCTGCGAAGGGCGTGTCGCGACCTTGTTTCGGGAATGGTCTGTGAATTTTGTGTCTCTTGTTTGGTCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15998398 429 +  16417988 TGCTCTGCTGCTGCCACTCCCAGCTTGGTGGCCAGGGCACA------GGTGTGAGCTGTGTGTGATGCTCGCCCATTGTGGTTCCTGCCTTCAA-GGCTGCCACACTGCAtctctgccatctctggttgctctccaatcgcttccaatagtgttttatag-ttttccagagtttgtagtttctgttcatggga-ggtgattctgatacaagctatcctgccattTCGAGAGGAAA-AC-CCCATGCTGTTTTCCTGTG-CCCACATTTTCTTCATAAAATCGTCAGTGGCTGTCCACGTTTGCTGACAGGCTTGCCAGGTCTTCTCCGTG-GTCTTGGCCTCTTCTGCTCCACTCCTTCCTCC-GGGCTG--TTTCCTCTGCAAAGGGCATGTCGCGACCTTGCTTTGGGGATGGTCTATGAATTTTGTGTCTCTTTTTTGGTCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       81117 434 +    298490 TGCTCTGCTGATGCCACTCCCAGCTCAGTGGCCAGGGCACA------GGTGTGAGCTGTGTGTGACACTTGCCCATTGTAGTTCCTGCCTTCAA-GGCTGCCACACCGTgtctctgccatctctggctgctctgcaatagcttccaacagtgttttatag-ttttccagagtttgtagtttctgctcatggga-ggtaattctgatacaaactatcctgccatttcaagaggaaAAGCTCCCATGCCGTTTTCCTGTGCCCCACGTTTTCTTCGTAAAATCGTCAGTGGCTGTCCACATTTGCCAATAGGCTTGCCAGGTCTTCTCCGTGCGTCTTAGCCCCTTCTGCTCCCCTCCTTCCTCCAGGGCTG--TTTCCTCTGTGAAGGGTGTGTCGCGACCTTGTTTTGGGGATGGTCTGTGAATTTTGTGTCTCTTTTTTGGTCT
i cebCap1.NW_016108158v1   C 0 I 48
s aotNan1.NW_018503740v1    25409585 432 -  25620257 TGCTCTGCTGATGCCACCCCCA--CCGGTGGCCAGGGCACA------GGTGTGAGCCGTGTGTGAAGCTCGCCCATTGTGGTTCCTGCCTTCAA-GGCTGCCACGCTGCgtctctgccatctctggttgctctccactagcttccagtagagttttatag-ttttccagagtctgtagtttctgttcatggga-ggtgattctgatataagctatcctgccatttccagaggAAAACCCCCCATGCTGTTTTCCTGTGCCCCACGTTTTCTTCGTAAAATCGTCGGTGGCTGCTCATGTTTGCCGATAGGCTTGCCAGGTCTTCTCTGTGCGTCTTGGCCTCTTCTGCTCCCCTCCTTCCTCCAGGGCTG--TTTCCTCTGCAAAGGGCGTGTCACAACCTTGCTTTGGGGATGGTCTGTGAATTTTGTGTCTCTTTTCTGGTCT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042  37 -    514179 I

a score=255471.000000
s hg38.chr5_KI270793v1_alt     51674 45 +    126136 gtatgtgt-cccaagtgccttt--------attttactgcacgctggaatgacg
s panTro5.chr5             181318994 45 - 181907262 GTATGTGT-CCCAAGTGCCTTT--------ATTTTACTGCACCCTGGAATGACG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039808 45 - 183735486 GTATGTGT-CCCAAGTGCCTTT--------ATTTTACTGCACCCTGGAATGACG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126462 45 +    698298 gtatgtgt-cccaagtgccttt--------attttactgcacactggaatgacg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120553631 45 - 121039945 gtatgtgt-cccaagtgccttt--------attttactgcaccctggaatgatg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508816 45 - 180051392 TCATGTGT-TCTAAGTGCCTTT--------GTTTTACTGCACCCTGGAATGACG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241494 45 - 181584905 tcatgtgt-tctaagtgccttt--------gttttactgcaccctggaatgacg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244401 45 -   1764207 TCATGTGT-TCTAAGTGCCTTT--------GTTTTACTGCGCCCTGGAATGACG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254232 45 -  16742782 TCATGTGT-TCCAAGTGCCTTT--------GTTTTACTGCACCCTGGAATGACG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557844 45 -  91010382 TTATGTGT-CCCAAGTGCCTTT--------ATTTTACTGCACCCTGGAATGACG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151750 45 -    438239 TCATGTGT-TCCAAGTGCCTTT--------GTTTTAGTGCACCCTGGAATGACG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833259 51 + 204313951 -T-TCTGT-GCAGAGTGCCTTTAAGGCAGGATCTTTCTGCATCCTGGAGTGACG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15998827 33 +  16417988 -TATATGTCCCAGAGTGCC--------------------CGTCCTGGAGTGGCG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25410017 45 -  25620257 -TATATGTCCCAGAGTGCCTTT--------ATCTTACTGCATCCTTGAGTGACG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81551 48 +    298490 I
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=16357.000000
s hg38.chr5_KI270793v1_alt     51719 3 +    126136 ctt
s panTro5.chr5             181319039 3 - 181907262 CTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039853 3 - 183735486 CTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126507 3 +    698298 ctt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120553676 3 - 121039945 ctt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508861 3 - 180051392 CTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241539 3 - 181584905 ctt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244446 3 -   1764207 CTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254277 3 -  16742782 CTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557889 3 -  91010382 CTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151795 3 -    438239 CTT
i manLeu1.NW_012110441v1   C 0 C 0
s aotNan1.NW_018503740v1    25410062 3 -  25620257 CTT
i aotNan1.NW_018503740v1   C 0 I 55
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81551 48 +    298490 I
e saiBol1.JH378155          15998860 0 +  16417988 C
e calJac3.chr2             203833310 0 + 204313951 C
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=5005.000000
s hg38.chr5_KI270793v1_alt     51722 1 +    126136 t
s panTro5.chr5             181319042 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039856 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126510 1 +    698298 t
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120553679 1 - 121039945 t
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508864 1 - 180051392 T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241542 1 - 181584905 t
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244449 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254280 1 -  16742782 T
i cerAty1.NW_012009470v1   C 0 I 468
s chlSab2.chr4              90557892 1 -  91010382 T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151798 1 -    438239 T
i manLeu1.NW_012110441v1   C 0 I 72
e aotNan1.NW_018503740v1    25410065 55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81551 48 +    298490 I
e saiBol1.JH378155          15998860 0 +  16417988 C
e calJac3.chr2             203833310 0 + 204313951 C
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=45156.000000
s hg38.chr5_KI270793v1_alt     51723 15 +    126136 ca----------------------------------------------------------------------ctgACAGTCCGGT
s panTro5.chr5             181319043 15 - 181907262 CA----------------------------------------------------------------------CTGACCGTCCGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039857 15 - 183735486 CA----------------------------------------------------------------------CTGACCGTCCGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126511 85 +    698298 cactgACAGTCCGGTGTTGGCGTCACCCGCCCTCCGCGCTGACCATCCGGTGTTGGCGTCACCCCCTCCGCGCTGACCGTCCGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120553680 15 - 121039945 ca----------------------------------------------------------------------ctgACAGTCTGGT
i nomLeu3.chr6             C 0 I 468
s rheMac8.chr6             179508865 15 - 180051392 CA----------------------------------------------------------------------CTGACAGTCCAGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241543 15 - 181584905 ca----------------------------------------------------------------------ctgACAGTCCAGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244450 15 -   1764207 CA----------------------------------------------------------------------CTGACAGTCCAGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254749 15 -  16742782 CA----------------------------------------------------------------------CTGACAGTCCGGT
i cerAty1.NW_012009470v1   I 468 C 0
s chlSab2.chr4              90557893 15 -  91010382 CA----------------------------------------------------------------------CTGACAGTCCGGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151871 15 -    438239 CA----------------------------------------------------------------------CTGACAGTCCGGT
i manLeu1.NW_012110441v1   I 72 C 0
e aotNan1.NW_018503740v1    25410065 55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81551 48 +    298490 I
e saiBol1.JH378155          15998860  0 +  16417988 C
e calJac3.chr2             203833310  0 + 204313951 C
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=114870.000000
s hg38.chr5_KI270793v1_alt     51738  34 +    126136 GTTGGCGTCACCTGCCCTCCGCACTGACCGTCC------------------------------------------------------------------------G
s panTro5.chr5             181319058  34 - 181907262 GTTGGCATCACCTGCCCTCCGCACTGACTGTCC------------------------------------------------------------------------G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039872  34 - 183735486 GTTGGCGTCACCTGCCCTCCGCAGTGACCGTCC------------------------------------------------------------------------G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126596  34 +    698298 GTTGGCGTCACCCGCCCTCCGCGCTGACCGTCC------------------------------------------------------------------------G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554163  34 - 121039945 GTTGGTGTCACCTGCCCTCCGCCCCGAGAGTCC------------------------------------------------------------------------G
i nomLeu3.chr6             I 468 C 0
s rheMac8.chr6             179508880  34 - 180051392 GTTGGTGTCACCTGCTGTTTGCACTGACAGTCC------------------------------------------------------------------------G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241558  34 - 181584905 GTTGGTGTCACCTGCTGTTTGCACTGACAGTCC------------------------------------------------------------------------G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244465 106 -   1764207 GTTGGTGTCACCTGCTGTTTGCACTGACAGTCCGGTGTTGGTGTCACCTGTTCTTCACACTGACAGTCTGGTGTTGGTGTCACCTGTTCTTTGCACTGACAGTCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254764  34 -  16742782 GTTGGTGTCACCTGCCCTTCGCACAGACAGTCC------------------------------------------------------------------------G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557908  34 -  91010382 GTTGGTGTCACCTGCCCTTCGCACTGACAGTCC------------------------------------------------------------------------G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      151886  34 -    438239 GTTGGTGTCACCTGTTCTTCGCACTGACAGTCC------------------------------------------------------------------------G
i manLeu1.NW_012110441v1   C 0 I 247
e aotNan1.NW_018503740v1    25410065  55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81551  48 +    298490 I
e saiBol1.JH378155          15998860   0 +  16417988 C
e calJac3.chr2             203833310   0 + 204313951 C
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042  37 -    514179 I

a score=133741.000000
s hg38.chr5_KI270793v1_alt     51772 31 +    126136 GTGTTGGCGTCACCTGCCCTCCGCACTGACC
s panTro5.chr5             181319092 31 - 181907262 GTGTTGGCGTCACCTGCCCTCCGCAGTGACC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039906 31 - 183735486 GTGTTGGTGTCACCTGCCCTCCGCACTGACC
i panPan2.chr5             C 0 T 36
s gorGor5.CYUI01015805v1      126630 31 +    698298 GTGTTGGCGTCACCCGCCCTCCGCGCTGACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554197 31 - 121039945 GCGTTGGTGTCACCTGCCCTCCGCCCCGAGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508914 31 - 180051392 GTGTTGGTGTCACCTGTTCTTCGCACTGACA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241592 31 - 181584905 GTGTTGGTGTCACCTGTTCTTCGCACTGACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244571 31 -   1764207 GTGTTGGTGTCACCTGCTCTTTGCACTGACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254798 31 -  16742782 GTGTTGGTGTCACCTGCCCTTCGCACTGACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557942 31 -  91010382 GTGTTGGTGTCACCTGCCCTTCGCACTGACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152167 31 -    438239 GTGTTGGTGTCACCTGCCCTTCGCACTGACA
i manLeu1.NW_012110441v1   I 247 C 0
e aotNan1.NW_018503740v1    25410065 55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81551 48 +    298490 I
e saiBol1.JH378155          15998860  0 +  16417988 C
e calJac3.chr2             203833310  0 + 204313951 C
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=65618.000000
s hg38.chr5_KI270793v1_alt     51803 13 +    126136 GTCCGGTGTTGGC
s panTro5.chr5             181319123 13 - 181907262 GTCCGGTGTTGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039901 13 - 183735486 GTCCGGTGTTGGT
i panPan2.chr5             T 36 C 0
s gorGor5.CYUI01015805v1      126661 13 +    698298 GTCCGGTGTTGGC
i gorGor5.CYUI01015805v1   C 0 I 227
s nomLeu3.chr6             120554228 13 - 121039945 GTCCGGCGTTGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508945 13 - 180051392 GTCCGGTGTTGGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241623 13 - 181584905 GTCCGGTGTTGGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244602 13 -   1764207 GTCCGGTGTTGGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254829 13 -  16742782 GTCCGGTGTTGGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557973 13 -  91010382 GTCCGGTGTTGGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152198 13 -    438239 GTCCGGTGTTGGT
i manLeu1.NW_012110441v1   C 0 C 0
e aotNan1.NW_018503740v1    25410065 55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81551 48 +    298490 I
e saiBol1.JH378155          15998860  0 +  16417988 C
e calJac3.chr2             203833310  0 + 204313951 C
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=59629.000000
s hg38.chr5_KI270793v1_alt     51816 12 +    126136 GTCACCTGCCCT
s panTro5.chr5             181319136 12 - 181907262 GTCACCTGCCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039914 12 - 183735486 GTCACCTGCCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126901 12 +    698298 GTCACCCGCCCT
i gorGor5.CYUI01015805v1   I 227 C 0
s nomLeu3.chr6             120554241 12 - 121039945 GTCACCTGCCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508958 12 - 180051392 GTCACCTGCTCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241636 12 - 181584905 GTCACCTGCTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244615 12 -   1764207 GTCACCTGCTCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254842 12 -  16742782 GTCACCTGCCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557986 12 -  91010382 GTCACCTGCCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152211 12 -    438239 GTCACCTGCCCT
i manLeu1.NW_012110441v1   C 0 C 0
e aotNan1.NW_018503740v1    25410065 55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81551 48 +    298490 I
e saiBol1.JH378155          15998860  0 +  16417988 C
e calJac3.chr2             203833310  0 + 204313951 C
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=710.000000
s hg38.chr5_KI270793v1_alt     51828 3 +    126136 -CTG
s panTro5.chr5             181319148 3 - 181907262 -CCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039926 3 - 183735486 -CCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126913 3 +    698298 -CCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554253 3 - 121039945 -TCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508970 3 - 180051392 -TCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241648 3 - 181584905 -TTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244627 3 -   1764207 -TCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254854 3 -  16742782 -TCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90557998 3 -  91010382 -TTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152223 3 -    438239 -TCG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833310 3 + 204313951 CTT-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15998860 3 +  16417988 CTT-
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25410065 55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81551 48 +    298490 I
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=50320.000000
s hg38.chr5_KI270793v1_alt     51831 7 +    126136 CACTGAC
s panTro5.chr5             181319151 7 - 181907262 CACTGAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039929 7 - 183735486 CACTGAC
i panPan2.chr5             C 0 I 1
s gorGor5.CYUI01015805v1      126916 7 +    698298 CGCTGAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554256 7 - 121039945 CACCGAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508973 7 - 180051392 CACTGAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241651 7 - 181584905 CACTGAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244630 7 -   1764207 CACTGAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254857 7 -  16742782 CACTGAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90558001 7 -  91010382 CACTGAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152226 7 -    438239 CACTGAC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833313 7 + 204313951 CACCGAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15998863 7 +  16417988 CACCGGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       81599 7 +    298490 CACCGAC
i cebCap1.NW_016108158v1   I 48 C 0
e aotNan1.NW_018503740v1    25410065 55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=3285.000000
s hg38.chr5_KI270793v1_alt     51838 1 +    126136 A
s panTro5.chr5             181319158 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126923 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554263 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508980 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241658 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244637 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254864 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90558008 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152233 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833320 1 + 204313951 A
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15998870 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       81606 1 +    298490 A
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25410065 55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I
e panPan2.chr5             183039936 1 - 183735486 I

a score=224566.000000
s hg38.chr5_KI270793v1_alt     51839 31 +    126136 GTCCGGTGTTGGTgtcacctgcccttcacac
s panTro5.chr5             181319159 31 - 181907262 GTCCGGTGTTGGTgtcacctgcccttcacac
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039937 31 - 183735486 GTCCGGTGTTGGTgtcacctgcccttcacac
i panPan2.chr5             I 1 C 0
s gorGor5.CYUI01015805v1      126924 31 +    698298 GTCCGGTGTTGGTgtcacctgcccttcacac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554264 31 - 121039945 GTCTGGCGTTGGTgtcacctgcccttcgcac
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179508981 31 - 180051392 GTCCGGTGTTGGTgtcacctgcccttcgcac
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241659 31 - 181584905 GTCCGGTGTTGGTgtcacctgcccttcgcac
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244638 31 -   1764207 GTCCGGTGTTGGTgtcacctgcccttcgcac
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254865 31 -  16742782 GTCCGGTGTTGGTgtcacctgcccttcgcag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90558009 31 -  91010382 GTCCGGTGTTGGTGTCACCTGCCCTTCGCAC
i chlSab2.chr4             C 0 I 108
s manLeu1.NW_012110441v1      152234 31 -    438239 GTCCGGTGTTGGTgtcacctgcccttcgcag
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833321 31 + 204313951 GTTTGGTGTTGATGCTGCCCGTCCTTCACAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15998871 31 +  16417988 GTTTGGCGTTGGTGCTGCCTGTCCTGCGCAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       81607 31 +    298490 GTTCGGTGTTGATGCTGCCTGTCCTTCGCAC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25410065 55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=144201.000000
s hg38.chr5_KI270793v1_alt     51870 20 +    126136 gtggaggctgctgttgcatt
s panTro5.chr5             181319190 20 - 181907262 gtggaggctgctgttgcatt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039968 20 - 183735486 gtggaggctgctgttgcatt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126955 20 +    698298 gtggaggctgctgttgcatt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554295 20 - 121039945 gtggaggctgctgttgcatt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179509012 20 - 180051392 gtggaggctactgttgcatt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241690 20 - 181584905 gtggaggctactgttgcatt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244669 20 -   1764207 gtggaggctactgttgcatt
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254896 20 -  16742782 gtggaggctgctgttgcatt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90558148 20 -  91010382 gtggaggctgctgttgcatt
i chlSab2.chr4             I 108 C 0
s manLeu1.NW_012110441v1      152265 20 -    438239 gtggaggctgctgttgcatt
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833352 20 + 204313951 GCAGAGGCTGCCACTGTGTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15998902 20 +  16417988 GCAGAGGCTGCTGCCACGTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       81638 20 +    298490 GCAGAGGCTGCTGCTGTGTT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25410065 55 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=444747.000000
s hg38.chr5_KI270793v1_alt     51890 50 +    126136 gcttcctgacctctgttgctgtgggtgagaagttggctgtcagtctgatC
s panTro5.chr5             181319210 50 - 181907262 gcttcctgacctctgttgttgtgggtgagaagttggctgtcagtccgatC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183039988 50 - 183735486 gcttcctgacctctgttgttgtgggtgagaagttggctgtcagtccgatC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      126975 50 +    698298 gcttcctgacctctgttgctgtgggtgagaagttggctgtcagtctgatC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554315 50 - 121039945 gcttcctgccctctgttgttgtgagtgagaagctggctgtcagtctgatC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179509032 50 - 180051392 gcttcctgacctctgttgttgtgggtgaaaagttggctgtcagtctgatC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241710 50 - 181584905 gcttcctgacctctgttgttgtgggtgagaagttggctgtcagtctgatC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244689 50 -   1764207 gcttcctgacctctgttgttgtgggtgagaagttggctgtcagtctgatC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254916 50 -  16742782 gcttcctggcctctgttgttgtgggtgagaagttggctgtcagtctgatC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90558168 50 -  91010382 gcttcctggcctctgttgttgtgggtgagaagttgactgtcagtctgatC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152285 50 -    438239 gcttcctggcctctgttgttgtgggtgagaagttggctgtcagtctgatC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833372 47 + 204313951 GCTTCCTGGCCTTTGCTGTTGTGGGTGAGAAGCTGGCCGT---TCTGATC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15998922 50 +  16417988 GCTTCCTGGCCTTTGCTGCTGTGGGTGAGAAGTTGGCCGTCGGTCTGATC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       81658 50 +    298490 GCTTCCCGGCCTTTGCTGTTGTGGGTGAGAAGTTGGCTGCCGGTCTGATC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25410120 50 -  25620257 GCTTCCTGGCCTTTGCTGTTGTGGGTGAGAAGTTGGCTGTCGGTCTGATC
i aotNan1.NW_018503740v1   I 55 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11706749 3218 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=2252910.000000
s hg38.chr5_KI270793v1_alt     51940 257 +    126136 ACCACGCAGACCCC-AGGGTCT----CCTTTTTTCAATGTTATTAGGCAAA--AGCCAGGCCTCTTAAGGGGATACCCTACCTGTTCCTAAGACCAAAAATACACTATTTAGAATGCAGTTGGCCTAATATTTCTGGTTACTATTTTCCAGTCTAATCGGAATAACTGCTCATCTTGAAGGGATAAATAAAGGCCACTTAAGGCTGAATTAGTATCTTACTCCTTTTAGGTGAA-ACAACATTATGGGAAGGGGAAATTTT-TTTT
s panTro5.chr5             181319260 257 - 181907262 ACCACGCAGACCCC-AGGGTCT----CCTTTTTTCAATGCTATTAGGCAAA--AGCCAGGCCTCTTAAGGGGATACCCTATCTGTTCCTAAGACCAAAAATACACTATTTAGAATGCAGTTGGCTTAATATTTCTGGTTACTATTTTCCAGTCTAATCGGAATAACTGCTCATCTTGAAGGGATAAATAAAGGCCACTTAAGGCTGAATTAGTATCTTACTCCTTTTAGGTGAA-ACAACATTATGGGAAGGGGAAATTTT-TTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183040038 257 - 183735486 ACCACGCAGACCCC-AGGGTCT----CCTTTTTTCAATGCTATTAGGCAAA--AGCCAGGCCTCTTAAGGGGATACCCTATCTGTTCCTAAGACCAAAAATACACTATTTAGAATGCAGTTGGCTTAATATTTCTGGTTACTATTTTCCAGTCTAATCGGAATAACTGCTCATCTTGAAGGGATAAATAAAGGCCACTTAAGGCTGAATTAGTATCTTACTCCTTTTAGGTGAA-ACAACATTATGGGAAGGGGAAATTTT-TTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      127025 257 +    698298 ACCACGCAGACCCC-AGGGTCT----CCTTTTTTCAATGTTATTAGGCAAA--AGCCAGGCCTCTTAAGGGGATACCCTATCTGTTCCTAAGACCAAAAATACACTATTTAGAATGCAGTTGGCCTAATATTTCTGGTTACTATTTTCCAGTCTAATCGGAATAACTGCTCATCTTGAAGGGATAAATAAAGGCCACTTAAGGCTGAATTAGTATCTTACTCCTTTTAGGTGAA-ACAACATTATGGGAAGGGGAAATTTT-TTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554365 257 - 121039945 ACCATGCAGATGCC-AGGGTCT----CCTTTTTTCAATGTTATTAGGCAAA--AGCCAGGCCTCTTAAGGGGATATCCTATCTGTTCCTAAGATCAAAAATACACTATTTAGAATGCAGGTGGCCTAATATTTCTGGTCACTGTTTTCCAGCCTAATCGGAATAACTGCTCATCTTGAAGGGATAAATAAAGGCCACTTAAGGCTGAATTAGTATCTCACTCCTTTTAGGTGAA-ACAACGTTATGGGAAGGGGAAATTTC-TTTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179509082 257 - 180051392 ACCATGCAGACCAC-AGGGTCT----CCTTTTTTCAGTGTTATTAGGCAAA--ATCCAGGCCTCTTAAGGGGATACCCTATCTGTTCCTAAGACCAAAAATACACTATTTAGAATGCAGTTGGCCTAATATTTCTGGTCACTATTTTCCAGTCTAATCGGAATAACTGCTCACCTTGAAGGGATAAATAAAGCCCACTTAAGGTCAAATTAGTATCTCACTCCTTTCAGGTGAA-ACAACGTTATGGGAAGGGGAGATTTC-TTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181241760 257 - 181584905 ACCATGCAGACCAC-AGGGTCT----CCTTTTTTCAGTGTTATTAGGCAAA--ATCCAGGCCTCTTAAGGGGATACCCTATCTGTTCCTAAGACCAAAAATACACTATTTAGAATGCAGTTGGCCTAATATTTCTGGTCACTATTTTCCAGTCTAATCGGAATAACTGCTCACCTTGAAGGGATAAATAAAGCCCACTTAAGGTCAAATTAGTATCTCACTCCTTTCAGGTGAA-ACAACGTTATGGGAAGGGGAGATTTC-TTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244739 257 -   1764207 ACCATGCAGACCAC-AGGGTCT----CCTTTTTTCAGTGTTATTAGGCAAA--ATCCAGGCCTCTTAAGGGGATACCCTATCTGTTCCTAAGACCAAAAATACACTATTTAGAATGCAGTTGGCCTAATATTTCTGGTCACTATTTTCCAGTCTAATCGGAATAACTGCTCACCTTGAAGGGATAAATAAAGCCCACTTAAGGTCAAATTAGTATCTCACTCCTTTCAGGTGAA-ACAACGTTATGGGAAGGGGAGATTTC-TTTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      254966 257 -  16742782 ACCATGCAGACCAC-AGGGTCT----CCTTTGTTCAGTGTTATTAGGCAGA--ATCCAGGCCTCTTAAGGGGATACTCTATCTGTTCCTAAGACCAAAAATACACTATTTAGAATGCAGTTGGCCTAATATTTCTGGTCACTATTTTCCAGTCTAATCGGAATAACTGCTCACCTTGAAGGGATAAATAAAGCCCACTTAAGGTCAAATTAGTATCTCACTCCTTTCAGGTGAA-ACAATGTTATGGGAAGGGGAGATTTC-TTTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90558218 257 -  91010382 ACCATGCAGACCAC-AGGGTCT----CCTTTTTTCAGTGTTATTAGGCAAA--ATCCAGGCCTCTTAAGGGGATACCCTATCTGTTCCTAAGACCAAAAATACACTATTTAGAATGCAGTTGGCCTAATATTTCTGGTCACTATTTTCCAGTCTAATCGGAATAACTGCTCACCTTGAAGGGATAAATAAAGCCCACTTAAGGTCAAATTAGTATCTCACTCCTTTCAGGTGAA-ACGACGTTATGGGAAGGGGAGATTTC-TTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152335 257 -    438239 ACCATGCAGACCAC-AGGGTCT----CCTTTGTTCAGTGTTATTAGGCAGA--ATCCAGGCCTCTTAAGGGGATACTCCATCTGTTCCTAAGACCAAAAATACACTATTTAGAATGCAGTTGGCCTAATATTTCTGGTCACTATTTTCCAGTCTAATCGGAATAACTGCTCACCTTGAAGGGATAAATAAAGCCCACTTAAGGTCAAATTAGTATCTCACTCCTTTCAGGTGAA-ACAACGTTATGGGAAGGGGAGATTTC-TTTT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833419 253 + 204313951 ACCGTGCAGACCCCTAGCGTCT----CCTTTTCTCAGTGTTATTCGGCAAA--AGCCAGGCCTCTTAAGGGGTTGCCGTATCTGTTCATAA---CCAAAATACACCATTTAGAATGCACTTCACCTAATATTTCTGGTCACTATTTTCCAGTCTAATGGGAACAACTGCTCATCTTGAAGGGATAA--AAAGGCCATTTAAGGCTGAATTCATATCTCACCACTTTTCAGTGAA-AAAACGTTATGGGAA-GGAAAATTTATTTTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15998972 251 +  16417988 ACCGTGCAGACCGC-AGGGTCT----CCTCTTCTCAGTGTTATTTGGCAAA--AGCCAGGCCTCTTAAGGGGATGCCCTATCTGTTCATAAGACAAAAAATACACCATTTAGAATGCGGTTCACCTAATATTTCTGGTCACTATTTTCCAGCCTAATTGGAATAACTGCTCATCTCGAAGGGATAA--AAAGGCCATTTAAGGCTGACTTAA---ATGGCCACTTTTCGATGAA-AAAACGTTATGGGAA-GGAAAATTTA-TTTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       81708 254 +    298490 ACTGTGCAGACCCC-AGGGTCT----CCTTTTCTCAGTGTTATTCGGCAAA--AGCCAGGCCTCTTAAGGGGATGCCCTATCTGTTCATAAGACCAAAAATACACCATTTAGAATGCGGTTCACCTAATATTTCTGGTCACTATTTTCCAGCCTAATTGGAATAACTGCTCATCTTGAAGGGATAA--AAAGGCCATTTAAGGCTGAATTCATATCCCATCACTTTTCAATGAA-AAAACGTTATGGGAA-GGAAAATTTA-TTTT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25410170 254 -  25620257 ACCGTGCAGATCCC-AGGGTCT----GCTTTTCTCAGTGTTATTCGGCAAA--GGCCAGGCCTCTTAAGGGGATGCCCTATCTGTTCATAAGACCAAAAATACACCATTTAGAATGCAGTTCACCTAATATTGCTGGTCACTATTTTCCAGCCTAATTGGAATAACTGCTCATCTTGAAGGGATAA--AAAGGCCATTTAAGGCTGAATTTGTATCCCACCACTTTTCGATGAA-AAAACGTTGTGGGAA-AGAAAATTTA-TTTT
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11709967 258 +  42124431 ACCCAGCAGACGTC-AGGGTTTGGTCACCTTTTCCAGTGCCA-TAAGCAAATGAATCAGGTCGCTTAGGGACATCCCCTACCTCTTCATAAGGCCAAAAGTATCAGATGTAAAATACAGT----CTAATATTTCTGGTCACCATTTTCCAACTGAAATGGAACAACTGCTCATCTTAAAGGGG-AAGCAAAGGAAAGTTAAGGCTGAGTTAGTACTACCACCCTTTAGAATGAAGAAAATGTTATGACAAGAGGGAACATT-TCTT
i canFam3.chr34            I 3218 I 4003
e otoGar3.GL873745           1860790 3778 -   2165740 I
e colAng1.NW_012118799v1      185042  37 -    514179 I

a score=10144.000000
s hg38.chr5_KI270793v1_alt     52197 2 +    126136 AC
s panTro5.chr5             181319517 2 - 181907262 AC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183040295 2 - 183735486 AC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      127282 2 +    698298 AC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554622 2 - 121039945 AA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179509339 2 - 180051392 AA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181242017 2 - 181584905 AA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244996 2 -   1764207 AA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      255223 2 -  16742782 AA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90558475 2 -  91010382 AA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152592 2 -    438239 AA
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833672 2 + 204313951 AA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15999223 2 +  16417988 AA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       81962 2 +    298490 AA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25410424 2 -  25620257 AA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11710225 4003 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=197294.000000
s hg38.chr5_KI270793v1_alt     52199 20 +    126136 GTGGCTGAGGAGAATAAATG
s panTro5.chr5             181319519 17 - 181907262 GTGGCT---GAGAATAAATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183040297 20 - 183735486 GTGGCTGAGGAGAATAAATG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      127284 20 +    698298 GTGGCTGAGGAGAATAAATG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554624 20 - 121039945 GTGGTTGAGGAGAATAAATG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179509341 20 - 180051392 GTGGTTAAGGAGAATAAATG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181242019 20 - 181584905 GTGGTTGAGGAGAATAAATG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      244998 20 -   1764207 GTGGTTGAGGAGAATAAATG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      255225 20 -  16742782 GTGGTTGAGGAGAATAAATG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90558477 20 -  91010382 GTGGTTGAGGAGAATAAATG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152594 20 -    438239 GTGGTTGAGGAGAATAAATG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833674 20 + 204313951 GTGGTTGAGGAGAATAAATG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15999225 20 +  16417988 GTGGTTGAGGAGAATAAACG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       81964 20 +    298490 GTGGTTGAGGAGGATAAATG
i cebCap1.NW_016108158v1   C 0 I 715
s aotNan1.NW_018503740v1    25410426 20 -  25620257 GTGGTCGAGGAGAATAAATG
i aotNan1.NW_018503740v1   C 0 I 587
s canFam3.chr34             11714228 20 +  42124431 GTGGTTGAGGAGAATGCATG
i canFam3.chr34            I 4003 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=428044.000000
s hg38.chr5_KI270793v1_alt     52219 71 +    126136 CATCTTGGAGGAATGGAAGTCATCAATAGATTGTACAAAATCTACTCCTAAGTACACACCCATCAGCAATG
s panTro5.chr5             181319536 71 - 181907262 CATCTTGGAGGAATGGAAGTCATCAATTGATTGTACAAAATCTACTCCTAAGTACACACCCATCAGCAATG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183040317 71 - 183735486 CATCTTGGAGGAATGGAAGTCATCAATTGATTGTACAAAATCTACTCCTAAGTACACACCCATCAGCAATG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      127304 71 +    698298 CGTCTTGGAAGAATGGAAGTCATCAATAGATTGTACAAAATCTACCCCTAAGTACACACCCATCAGCAATG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554644 70 - 121039945 CATCTT-GAAGAATGGAAGTCATCAACAGATTGTACAAAATTGACTCCTAAGTACACAGCCATCAGCAATG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179509361 71 - 180051392 CATCGTGGAGAAATGGAAGTCATCAGTAGATTGTACAaaatccactcctaagtacacacctatcagcaatg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181242039 71 - 181584905 CATCGTGGAGGAATGGAAGTCATCAGTAGATTGTACAaaatccactcctaagtacacacctatcagcaatg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      245018 71 -   1764207 CATCATGGAGGAATGGAAGTCATCAGTAGATTGTACAaaatccactcctaagtacacacctatcagcaatg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      255245 71 -  16742782 CATCGTGGAGGAATGGAAGTCATCAGTAGATTGTACAaaatccactcctaagtacacacctatcagcaatg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90558497 71 -  91010382 CATCGTGGAGGAATGGAAGTCATCAGTAGATTGTACAaaatccactcctaagtacacccctatcagcaata
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      152614 71 -    438239 CATCGTGGAGGAATGGAAGTCATCAGTAGATTGTACAaaatccactcctaagtacacacctatcagcaatg
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203833694 53 + 204313951 ------------------GTCAACAGTAGATTGCATAaaatccactgctaagtacacacctgtcagcaatg
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          15999245 53 +  16417988 ------------------GTCATCAATAGATTGCATAaaatccactcctaagtacacacctgtcagcgatg
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11714248 69 +  42124431 CGGTTTGGAGGAAT-AAAGTAACCAACAGA-CGTGTACCAtccacggccaagtacatgcccttgagaagtg
i canFam3.chr34            C 0 I 2586
e aotNan1.NW_018503740v1    25410446 587 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81984 715 +    298490 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=19027.000000
s hg38.chr5_KI270793v1_alt     52290 4 +    126136 AGTT
s panTro5.chr5             181319607 4 - 181907262 AGTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183040388 4 - 183735486 AGTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      127375 4 +    698298 AGTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554714 4 - 121039945 AGTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179509432 4 - 180051392 agtt
i rheMac8.chr6             C 0 I 559
s macFas5.chr6             181242110 4 - 181584905 agtt
i macFas5.chr6             C 0 I 1599
s macNem1.NW_012012389v1      245089 4 -   1764207 agtt
i macNem1.NW_012012389v1   C 0 I 563
s cerAty1.NW_012009470v1      255316 4 -  16742782 agtt
i cerAty1.NW_012009470v1   C 0 I 259
s chlSab2.chr4              90558568 4 -  91010382 agtt
i chlSab2.chr4             C 0 I 259
s manLeu1.NW_012110441v1      152685 4 -    438239 agtt
i manLeu1.NW_012110441v1   C 0 I 259
s calJac3.chr2             203833747 4 + 204313951 catc
i calJac3.chr2             C 0 I 692
s saiBol1.JH378155          15999298 4 +  16417988 catc
i saiBol1.JH378155         C 0 I 359
e aotNan1.NW_018503740v1    25410446 587 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81984 715 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=1592452.000000
s hg38.chr5_KI270793v1_alt     52294 291 +    126136 CAAATTGgctgggggctggggaggtgggaggaggtgaatgctgaggcagggggtggggggcatgaaatgttctaaaatgcactgtggtgacagatgcacacacc-aggaatatactaGGAGCAAAACAAAAGAAAGAAAAAGAAGTC-CTTGACGAGGAACAGGGGTCACCTTTATAGACCCTCCATAAAGCCCCGCGTGG-----GGGAGCTCTCTTGGAGGACGGTGCCCTCTGATGAAAGTGGAGCCCGGACTCATGAAGGATCTCAGCACTCAGGGTCAAAC-ACCGCCGGGCTG
s panTro5.chr5             181319611 291 - 181907262 CAAATTggctgggggccggggaggtgggaggaggtgaacgctgaggcagggggtggggggcatgaaatgttctaaaatgcactgcggtgacagatgcacacacc-aggaatatactaGGAGCAAAACAAAAGAAAGAAAAAGAAGTC-CTTGACGAGGAACAGGGGTCACCTTTATAGACCCTCCATAAAGCCTCGCGTGG-----GGGAGCTCTCTTGGAGGATGGTGCCCCCTGATGACAGTGGAGCCCGGACTCGTGAAGGATCTCAGCACTCAGGGTCAAAC-ACCGCCGGCCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183040392 291 - 183735486 CAAATTggctgggggccggggaggtgggaggaggtgaacgctgaggcagggggtggggggcatgaaatgttctaaaatgcactgcggtgacagatgcacacacc-aggaatatactaGGAGCAAAACAAAAGAAAGAAAAAGAAGTC-CTTGACGAGGAACAGGGGTCACCTTTATAGACCCTCCATAAAGCCTCGCGTGG-----GGGAGCTCTCTTGGAGGACGGTGCCCTCTGATGAAAGTGGAGCCCGGACTCGTGAAGGATCTCAGCACTCAGGGTCAAAC-ACCGCCGGCCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      127379 289 +    698298 CAAATTggctgggggccggggaggtgggaggaggtgaacgctgaggcagggggtggggggcATGAAATGTTCTAAAATGCACTGCGGTGACAGATGCACACACC-AGGAATATACTAGGAGCAAAACAAAAGAAAGAAAAAGAAGTC-CGTGACGAGGAAC-GGGGTCACCTTTGTAGAGCCTCCAGAAAGCCTCGCGT-G-----GAGAGCTCTCTTGGAGGACGGTGCCCTCTGATGAAAGTGGAGCCCGGACTCATGAAGGATCTCAGCACTCAGGGTCAAAC-ACCGCCGGGCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120554718 290 - 121039945 CAAATCAGCCAGAGGCTGGGGAGGTGGGAGGAGGTGAACGCTGAGGCGGGGGGtggggggcatgaaatgttctaaaatgcactgtggtgacagatgcacacacc-gggaatatgctaGGAGCAAAACAAAACAAAGAAAAAGAAGTC-CTTGACGAGCAACAGGGGTCACCTTTGTAGACCCTCCATAAAGCCTCGTGT-C-----AGGAGCTCTTTTGGAGGACGGTGCCCTCTGATGGAAGTGGAGCCCGGACTCGTGAAGGATCTCAGCACTCAGGGTCAAAC-TCCGCCGGGCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179509995 289 - 180051392 caaatcggccggggaccggggaggtgggaggaggtgaacgctgaggcggcgggtagggggcatgaaatgttctaaaatgcgttgtggtgacagatgcacacaccccggaatatactaggagccaAACAA---AAAGAAAAAGAAGCC-CATGACAAGCAACAGGGGTCACCTTTGTGGACCCTCCGTAATGCCTCTCGTCG-----GGGAGCTCCCTTGGAGGATGGTGCCCTCTGATGAAAGCGGAGCCCGGATTCATGAAGGATCTCGGCACTCAAGGTCAAAC-CCTGCCGGGCCG
i rheMac8.chr6             I 559 C 0
s macFas5.chr6             181243713 289 - 181584905 caaatcggccggggaccggggaggtgggaggaggtgaacgctgaggcggcgtgtagggggcatgaaatgttctaaaatgcgttgtggtgacagatgcacacaccccggaatatactaggagccaAACAA---AAAGAAAAAGAAGCC-CATGACAAGCAACAGGGGTCACCTTTGTGGACCCTCCGTAACGCCTCTCGTCG-----GGGAGCTCCCTTGGAGGATGGTGCCCTCTGATGAAAGCGGAGCCCGGATTCATGAAGGATCTCGGCACTCAAGGTCAAAC-CCTGCCGGGCCG
i macFas5.chr6             I 1599 C 0
s macNem1.NW_012012389v1      245656 289 -   1764207 caaatcggccggggaccggggaggtgggaggaggtgaacgctgaggcggcgggtagggggcatgaaatgttctaaaatgcgttgtggtgacagatgcacacaccccggaatatactaggagccaAACAA---AAAGAAAAAGAAGCC-CATGACAAGCAACAGGGGTCACCTTTGTGGACCCTCCGTAACGCCTCTCGTCG-----GGGAGCTCCCTTGGAGGATGGTGCCCTCTGATGAAAGCGGAGCCCGGATTCATGAAGGATCTCGGCACTCAAGGTCAAAC-CCTGCCGGGCCG
i macNem1.NW_012012389v1   I 563 C 0
s cerAty1.NW_012009470v1      255579 289 -  16742782 caaaTCGGCCGGGGACTGGGGAGGTGGGAGGAGGTGAACGCTGAGGCGGCAGGtagggggcatgaaatgttctaaaatgcgttgtggtgacagatgcacacaccccggaatatactaggagccaAACAA---AAAGAAAAAGAAGCC-CATGACGAACAACAGGGGTCACCTTTGTGGACCCTCCATAACGCCTCTCGTTG-----GGGAGCTCCCTTGGAGGATGGTGCCCTCTGATGAAAGCGGAGCCCGGATTCATGAAGGATCTCGGCACTCAAGGTCAAAC-CCTGCCGGGCCG
i cerAty1.NW_012009470v1   I 259 C 0
s chlSab2.chr4              90558831 289 -  91010382 caaatcggccggggaccggggaggtgggaggaggtgaatgctgaggcggcgggtagggggcatgaaatgttctaaaatgcgttgtggtgacagatgcacacacctgggaatatactaggagccaAACAA---AAAGAAAAAGAAGCT-CATGACGAGCAACAGGGGTCACCTTTGTGGACCCTCCATAACGCCTCTCGTCG-----GGGAGCTCCCTTGGAGGATGGTGCCCTCTGATGAAAGCGGAGCCCGGATTCATGAAGGATCTCGGCACTCAGGGTCAAAC-CCTGCCGGGCCG
i chlSab2.chr4             I 259 C 0
s manLeu1.NW_012110441v1      152948 289 -    438239 caaatcggccggggaccggggaggtgggaggaggtgaacgctgaggcggcaggtagggggcatgaaatgttctaaaatgcgttgtggtgacagatgcacacaccccgaaatatactaggagccaAACAA---AAAGAAAAAGAAGCC-CATGACGAGCAACAGGGGTCACCTTTGTGGACCCTCCATAACGCCTCTCATCG-----GGGAGCTCCCTTGGAGGATGGTGCCCTCTGATGAAAGCGGAGCCCGGATTCTTGAAGCATCTCGGCACTCAAGGTCAAAC-CCTGCCGGGCCG
i manLeu1.NW_012110441v1   I 259 C 0
s calJac3.chr2             203834443 288 + 204313951 CAAATTGGCT-GGGACAGGGGTGACAGGAGGAGGTGAACACTGAGGCAGGGGG--GGGGGCACGATACGTTCTGAAATGTATCGTGGTAACAGACACACAGACCCAAGAGCATATGAGGAGCAAAACGA---ATAG--AAAGAAGCCATGTGATGAGCAGCA-GGGTTCCCTCTGCAGACCTTCCATAAAGCCTGGTCGGGGCAGGGGGAGCTGGCCGGGAGGATGGCACC--CTGCTGAAATTGGAGTCCTGAGTCGTGAAGGATCTCGGCCCTTGGGACCAGACCCCCACCGGGCCA
i calJac3.chr2             I 692 C 0
s saiBol1.JH378155          15999661 277 +  16417988 CAAATTGGCC-GGGACAGGGGTGATAGGAGAAGGTGAACACTGAGACAGGGGC--GGGGGCATGATATGTTCTGAAATGTGTCGTGGTAACAGACACACAGAGCCAAGAGCATATGAGGAGCAAAACAG---AAAG--AAAGAAGCCACATGATGAGCAGCAGGGGTCCCCTCTGCAGACCTTCCATAAAGCCT------------GGGAGCTGGCTGGGAGGATGGCGCC--CTGCTGAATTTGGAGTCCTGAGTCGTGAAGGATCTCAGCCCTCGGGACCAGACGCCCAACAGGCCA
i saiBol1.JH378155         I 359 C 0
e aotNan1.NW_018503740v1    25410446 587 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       81984 715 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042  37 -    514179 I

a score=2200583.000000
s hg38.chr5_KI270793v1_alt     52585 264 +    126136 CATGTGGCTCCACGCCAGCCCCCTCTGCTCCCTTCCCACCTGGGTAGACCCCGGGAGGTGGGGAGGGGCCTCTGGCCTCTCAGATCCTGGCCAGGATCTGGGCGTTTCAATAGCATCGTAAACACCATCTCACCAGCAGCAGCAGGGGCCCCGCCTGTCGCTGGACGATTTCCATGCCAGGCGCCAGGATTAGAAGCTGCAGGAGAAACTAGGGAGGCTCCTGCTCTGGAGGATGCACAGGGTCCGGGAGGGAGAACGGCCCCC
s panTro5.chr5             181319902 264 - 181907262 CATGTGGCTCCACGCCAGCCCCCTCTGCTCCCTTCCCACCTGGGGAGACCCCAGGAGGTGGGGAGGGGCCTCTGGCCTCTCAGATCCTGGCCAGGATCTGGGCGTTTCAATAGCATCGTAAACACCATCTCACCAGCAGCAGCAGGGGCCCCTCCTGTCGCTGGACGATTTCCATGCCAGGCGCCAGGATTAGAAGCTGCAGGAGAAACTAAGGAGGCTCCTGCTCTGGAGGATGCCCAGGGCCCGGGAGGGAGAACGGCCCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183040683 264 - 183735486 CATGTGGCTCCACGCCAGCCCCCTCTGCTCCCTTCCCACCTGGGGAGACCCCAGGAGGTGGGGAGGGGCCTCTGGCCTCTCAGATCCTGGCCAGGATCTGGGCGTTTCAATAGCATCGTAAACACCATCTCACCAGCAGAAGCAGGGGCCCCTCCTGTCGCTGGACGATTTCCATGCCAGGCGCCAGGATTAGAAGCTGCAGGAGAAACTAAGGAGGCTCCTGCTCTGGAGGATGCCCAGGGCCCGGGAGGGAGAACGGCCCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      127668 264 +    698298 CATGTGGCTCCACGCCAGCCCCCTCTGCTCCCTTCCCACCTGGGTAGACCCTGGGAGGTGGGAAGGGGCCTCTGGCCTCTCAGATCCTGGCCAGGATCTGGGCGTTTCAATAGCATCGTAAACACCATCTCACCAGCAGCAGCAGGGGCCCCGCCTGTCGCTGGATGATTTCCATGCCAGGCGCCAGGATTAGAAGCTGCAGGAGAAACTAGGGAGGCTTCTGCTCTGGAGGATGCACAGGGTCCGGGAGGGAGAACGGCCCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555008 261 - 121039945 TATGTAGCT-CACGCAG--CCCCTCTGCTCCCTTCCCACCTGGGGAGACCCCGGGAGATGGGGAGGGGCCTCTGACCTCTCAGATCCTGGCCAGGATCTGGGCATTTCAACAGCATTGTAAACACCATCTCACCAGCAGCAGCAGGGGCCCCTCCTGTCGCTGGATGATTGCCACGCCAGGTGCCAGGATTAGAAGCTGCAGGAGAAAGTAGGGAGGCTCCTGCTCTGGAGGGCGCACAGGGCCCGGGAGGGAGAACGGTCCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179510284 263 - 180051392 CATGTGGCTCCACGCCAG-CCCCTCTACTCCCTTCCCACCTGGGGAGACCCCGGGAGGTGGGAAGGGGCCTCTGGCCTCTCGGATCCTGGCCAGGATCTGGGCCTTCCAACAGCACTGTAAACACAGTCTCACCAGCAGCAGCAGGGGCCCCTCCTGTCGCTGGACGATTTCCATGCCAGGCGCCAGGATTAGAAGCTGCAGGAGAACCTGGGGAGGCTTCTGCTCTGGAGGAGGCACAGGGCCCAGGAGGGAGAATGGCCCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244002 263 - 181584905 CATGTGGCTCCACGCCAG-CCCCTCTGCTCCCTTCCCACCTGGGGAGACCCCGGGAGGTGGGAAGGGGCCTCTGGCCTCTCGGATCCTGGCCAGGATCTGGGCCTTCCAACAGCACTGTAAACACAGTCTCACCAGCAGCAGCAGGGGCCCCTCCTGTCGCTGGACGATTTCCATGCCAGGCGCCAGGATTAGAAGCTGCAGGAGAACCTGGGGAGGCTTCTGCTCTGGAGGAGGCACAGGGCCCAGGAGGGAGAATGGCCCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      245945 263 -   1764207 CATGTGGCTCCACGCCAG-CCCCTCTGCTCCCTTCCCACCTGGGGAGACCCCGGGAGGTGGGAAGGGGCCTCTGGCCTCTCGGATCCTGGCCAGGATCTGGGCCTTCCAACAGCACTGTAAACACAGTCTCACCAGCAGCAGCAGGGGCCCCTCCTGTCGCTGGACGATTTCCATGCCAGGCGCCAGGATTAGAAGCTGCAGGAGAACCTGGGGAGGCTTCTGCTCTGGAGGAGGCACAGGGCCCAGGAGGGAGAATGGCCCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      255868 263 -  16742782 CATGTGGCTCCACGCCAG-CCCCTCTGCTCCCTTCCCACCTGGGGAGACCCCGGGAGGTGGGGAGGGGCCTCTGGCCTCTCGGATCCTGGCCAGGATCTGGGCCTTCCAACAGCGCTGTAAACACAGTCTCACCAGCAGCAGCAGGGGCCCCTCCTGTCGCTGGACGATTTCCATGCCAGGCGCCAGGATTAGAAGCTGCAGGAGAACCTGGGGAGGCTTCTGCTCTGGAGGAGGCACAGGGCCCAGGAGGGAGAATGGCCCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559120 263 -  91010382 CATGTGGCTCCACGCCAG-CCCCTCTGCTCCCTTCCCACCTGGGGAGACCCCGGGAGGTGGGGAGGGGCCTCTGGCCTCTCGGATCCTGGCCAGGATCTGGGCCTTCCAACAGCGCTGTAAACACAGTCTCACCAGCAGCAGCAGGGGCCCCTCTTGTCGCTGGACGATTTCCATGCCAGGCACCAGGATTAGAAGCTGCAGGAGAACCTGGGGAGGCTTCTGCTCTGGAGGAGGCACAGGGCCCAAGAGGGAGAATGGCCCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      153237 263 -    438239 CATGTGGCTCCACGCCAG-CCCTTCTGCTCCCTTCCCACCTGGGGAGACCCCGGGAGGTGGGGAGGGGCCTCTGGCCTCTCGGGTCCTGGCCAGGATCTGGGCCTTCCAACAGCGCTGTAAACACAGTCTCACCAGCAGCAGCAGGGGCCCCTCCTGTCGCTGGACGATTTCCATGCCAGGCGCCAGGATTAGAAGCTGCAGGAGAACCTGGGGAGGCTTCTGCTCTGGAGGAGGCACAGGGCCCAGGAGGGAGAATGGCCCCC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203834731 261 + 204313951 CTTGTGGCTCCGTGCCAGCCCCCTCTGCTCCCTTCCCACATGGGAAGACCCCAGGAACTGGGCAGGGGCTGCTGACCCCTCAGACCCTGGCCAGGATCTGGGCTTTTAAACAGAGGTATCAACACAGTCTCACCAGCAGCAGCAGGGGCCCCTCCTGTCAC---GTGATTTCCATGCCAGGCGCCAGGAATAGAAGCTGCAGGAGAACCCGGGAAGGCTCCTGCTATGGAGGATGCACAGGGCCCAGGAGGGAGAATGGCCCCC
i calJac3.chr2             C 0 I 2
s saiBol1.JH378155          15999938 260 +  16417988 CATGTGGCTCCGTGCCAGCCCCCTCTGCTCCCTTCCCATGTGGTAAGACCCCGGGAACTGGGCAGGGGCCGCTGGCCCCTCAGATCCTGACCAGGATCTGGGCTTTTAAACAGTGCTGTCAACACAGTCTCACCACCAGCAGCAGGGGCCCCTCCTGTCAG---GTGATTTCCGTGCCAAGCACCAGGAATAGAAGCCGCAGGAGAACCCAGGAAGGCTCCTGCTCTGGAGGACACACAGGGCCCAGGAGGG-GAATAGCCCCC
i saiBol1.JH378155         C 0 I 2
s cebCap1.NW_016108158v1       82699 261 +    298490 CATGTGGCTCTGTGCCAGCCCCCTCTGCTCCCTTCCCACATGGGAAGACCCCAGGAACTGGGCAGGAGCCACTGGCCCCTCAGATCCTGGTCAGGATCTGGGCTTTTAAACAGTGCTATCAACACAGTCTCACCAGCAGCAGCAGGGGCCCCTTCTGTCAC---GTGATTTCCGTGCCAGGCGCCAGGAATAGAAGCCGCAGGAGAACCCGGGAAGGCTCCTGCTCTGGAGGACGCACGGGGCCCAGGAGGGAGAACAGCCCCC
i cebCap1.NW_016108158v1   I 715 I 86
s aotNan1.NW_018503740v1    25411033 261 -  25620257 CATGTGGCTCTGTGCCAGCCCCCTCTGCTCCCTTCCCACATGGGAAGACCCCAGGAACTGGGCAGGGGCCGCTGGCCCTTCAGATCCTGGCCAGGATCTGGGCTCTTAAACAGTGATATCAACACAGTCTCACCAGCAGCAGCAGGGGCCCCTCCTGTCAC---GTGATTTCCGTGCCAGGCGCCAGGAATTGAAGCCGCAGGAGAACCCGGGAAGGCTCCTGCTCTGGAGGACGCATGGGGCCCAGGAGGGAGAACAGCCCCC
i aotNan1.NW_018503740v1   I 587 I 2
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042  37 -    514179 I

a score=209554.000000
s hg38.chr5_KI270793v1_alt     52849 32 +    126136 CAGCCGCTGGCC---------------------------------------------GGCT------CTGCAGCTCAGGGTCC
s panTro5.chr5             181320166 32 - 181907262 CAGCCACTGGCT---------------------------------------------GGCT------CTGCAGCTCAGGGTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183040947 32 - 183735486 CAGCCACTGGCC---------------------------------------------GGCT------CTGCAGCTCAGGGTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      127932 32 +    698298 CAGCCGCTGGCC---------------------------------------------GGCT------CTGCAGCTCAGGGTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555269 38 - 121039945 CAGCCACTGGCC---------------------------------------------GGCTCTGCAGCTGCAGCTCAGGGTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179510547 32 - 180051392 CAGCCACCAGCC---------------------------------------------GGCT------CTGCAGCTCAGCGTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244265 32 - 181584905 CAGCCACCAGCC---------------------------------------------GGCT------CTGCAGCTCAGCGTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246208 32 -   1764207 CAGCCACCAGCC---------------------------------------------GGCT------CTGCAGCTCAGCGTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256131 32 -  16742782 CAGCCACCAGCC---------------------------------------------GGCT------CTGCAGCTCAGTGTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559383 32 -  91010382 CAGCCACCAGCC---------------------------------------------GGCT------CTGCAGCTCAGCGTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      153500 32 -    438239 CAGCCACCAGCC---------------------------------------------GGCT------CTGCAGCTCAGCGTCC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203834994 77 + 204313951 CAGCTACTGGCTGGTTCTGTGGCTCAGGGTCCCACCAGGCCCCCCCAGCCACCAGCCGGCT------CTGTGGCTCAGGGTCC
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          16000200 32 +  16417988 CAGCTACTGGCT---------------------------------------------GGCT------CTGTGGCTCAGGGTCC
i saiBol1.JH378155         I 2 C 0
s aotNan1.NW_018503740v1    25411296 32 -  25620257 CAGCCACTGGCC---------------------------------------------AGCT------CTGTGGCTCAGGGTCC
i aotNan1.NW_018503740v1   I 2 I 51
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       82960 86 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=39153.000000
s hg38.chr5_KI270793v1_alt     52881 8 +    126136 TGCTGGGC
s panTro5.chr5             181320198 8 - 181907262 CGCTGGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183040979 8 - 183735486 CGCTGGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      127964 8 +    698298 CGCTGGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555307 8 - 121039945 CACCAGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179510579 8 - 180051392 CACCAGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244297 8 - 181584905 CACCAGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246240 8 -   1764207 CACCAGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256163 8 -  16742782 CACCAGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559415 8 -  91010382 CACCAGGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      153532 8 -    438239 CACCAGGA
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203835071 8 + 204313951 CACCAGGC
i calJac3.chr2             C 0 I 44
s saiBol1.JH378155          16000232 8 +  16417988 CACCAGGC
i saiBol1.JH378155         C 0 I 44
e aotNan1.NW_018503740v1    25411328 51 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       82960 86 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=385119.000000
s hg38.chr5_KI270793v1_alt     52889 44 +    126136 ACCCAGGCCCGGCTCTCCCTGGGGCTCTCAGGCCCAGCTTTAAA
s panTro5.chr5             181320206 44 - 181907262 ACCCAGGCCCAGCTCTCCCTGGGGCTCTCAGGCCCAGCTTTAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183040987 44 - 183735486 ACCCAGGCCCAGCTCTCCCTGGGGATCTCAGGCCCAGCTTTAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      127972 44 +    698298 ACCCAGGCCCGGCTCTCCCTGGGGCTCTCAGGCCCAGCTTTAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555315 44 - 121039945 ACCCAGGCCCAGCTCTCCCCGGGGCTCTCAGGCCCAGCTTTAAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179510587 44 - 180051392 ACCCGGACCCGGCTCTCCCCAGGACTCTCAGGCCCAGCTTTAAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244305 44 - 181584905 ACCCGGACCCGGCTCTCCCCAGGACTCTCAGGCCCAGCTTTAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246248 44 -   1764207 ACCCGGACCCGGCTCTCCCCAGGACTCTCAGGCCCAGCTTTAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256171 44 -  16742782 ACCCGGACCCGGCTCTCCCCAGGACTCTCAGGCCCAGCTTTAAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559423 44 -  91010382 ACCCGGACCCGGCTCTCTCCAGGACTCTCAGGCCCAGCTTTAAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      153540 44 -    438239 ACCCGGACCCGGCTCTCCCCAGGACTCTCAGGCCCAGCTTTAAA
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203835123 44 + 204313951 ACCCAGGCCCGGCTCTCCCTGGTGCTCTCAGGCCCAGCTTTAAA
i calJac3.chr2             I 44 C 0
s saiBol1.JH378155          16000284 44 +  16417988 GCCTGGGCCCGGCTCTCCCCGGTGCTCTCAGGCCCAGCTTTAAA
i saiBol1.JH378155         I 44 C 0
s cebCap1.NW_016108158v1       83046 44 +    298490 ACCCGGGCCTGGCTCTCCCCGGTGCTCTCAGGCCCAGCTTTAAA
i cebCap1.NW_016108158v1   I 86 I 44
s aotNan1.NW_018503740v1    25411379 44 -  25620257 ACCCCGGCCCGGCTCTCCCTGGTGCTCTCAGACCCAGCTTTAAA
i aotNan1.NW_018503740v1   I 51 I 39
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=5005.000000
s hg38.chr5_KI270793v1_alt     52933 1 +    126136 A
s panTro5.chr5             181320250 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041031 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128016 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555359 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179510631 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244349 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246292 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256215 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559467 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      153584 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
e aotNan1.NW_018503740v1    25411423 39 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       83090 44 +    298490 I
e saiBol1.JH378155          16000328 0 +  16417988 C
e calJac3.chr2             203835167 0 + 204313951 C
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=225515.000000
s hg38.chr5_KI270793v1_alt     52934 73 +    126136 AGTCACGTTGCACttgtttgttgttgttgttgttgttgttttgggtttttt-gtttgttcgtttttTAACGTGT
s panTro5.chr5             181320251 70 - 181907262 AGTCATGTTGCACttgt---tttttgttgttgttgttgtttggggtttttt-gtttgtttgttttttAACGTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041032 70 - 183735486 AGTCATGTTGCACttgt---tttttgttgttgttgttgtttggggtttttt-gtttgtttgttttttAACGTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128017 70 +    698298 AGTCAtgttgcacttgt---tttttgttgttgttgttgttttgggtttttt-gtttgtttgtttttTAACGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555360 60 - 121039945 AGTCATGTTGCACttgt---ttt------ttgttactgttttgggtttttt-gttt----gttttttAACGTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179510632 69 - 180051392 AGTCGTGTTGCACttgt---tttgtctgtttgtt--tgtttgttgttttttgggggggttgttttttAACGTGT
i rheMac8.chr6             C 0 I 3
s macFas5.chr6             181244350 69 - 181584905 AGTCGTGTTGCACttgt---tttgtctgtttgtt--tgtttgttgtttTTGGGGGGGGTTGTTTTTTAACGTGT
i macFas5.chr6             C 0 I 3
s macNem1.NW_012012389v1      246293 68 -   1764207 AGTCGTGTTGCACttgt---tttgtctgtttgtt--tgtttgttgttttt-gggggggttgttttttAACGTGT
i macNem1.NW_012012389v1   C 0 I 3
s cerAty1.NW_012009470v1      256216 66 -  16742782 AGTCATGTTGCACttgt---tttgtgtgtttgtt--tgtttgtttttt---ggggggattgttttttAACGTGT
i cerAty1.NW_012009470v1   C 0 I 3
s chlSab2.chr4              90559468 68 -  91010382 AGTCATGTTGCACttgt---tttgtctgtttgtt--tgtttgttgtttttt-gGGGGGTTTTTTTTTAACGTGT
i chlSab2.chr4             C 0 I 3
s manLeu1.NW_012110441v1      153585 69 -    438239 AGTCATGTTGCACttgt---tttgtgtgtttgtt--tgtttgttgttttttgggggggttgttttttAATGTGT
i manLeu1.NW_012110441v1   C 0 I 3
s calJac3.chr2             203835167 36 + 204313951 AGTCATGTTGTGCTTG----------------------------GTTTTAT----------TTTTTTAACATGT
i calJac3.chr2             C 0 I 3
s saiBol1.JH378155          16000328 41 +  16417988 AGTCATGTTGTACTTGG---TTT--------------------TGTTTTAT----------TTTTTTAACATGT
i saiBol1.JH378155         C 0 I 3
e aotNan1.NW_018503740v1    25411423 39 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       83090 44 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=496083.000000
s hg38.chr5_KI270793v1_alt     53007 61 +    126136 AACAACGCACGCATGTAATAGAAAGGAGACATGAATGGGTCTCCTGGCCACACAGCTCCCT
s panTro5.chr5             181320321 61 - 181907262 AACAACGCACGCATGTAATAGAAAGGAGACATGAATGGGTCTCCTGGCCACACAGCTCCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041102 61 - 183735486 AACAACGCACGCATGTAATAGAAAGGAGACATGAATGGGTCTCCTGGCCACACAGCTCCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128087 61 +    698298 AACAACGCACGCATGTAATAGAAAGGAGACATGAATGGGTCTCCTGGCCACACAGCTCCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555420 61 - 121039945 AACGACACTCGCATGTGATAGAAAGGAGACATGAATGGGTCTCCCGGCCACACAGCTCCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179510704 61 - 180051392 AACAACACACGCGTTTGATAGAAAACAGACACGAATGGGTCTCCTGGCCACACAGCTCCCT
i rheMac8.chr6             I 3 C 0
s macFas5.chr6             181244422 61 - 181584905 AACAACACACGCGTTTGATAGAAAACAGACACGAATGGGTCTCCTGGCCACACAGCTCCCT
i macFas5.chr6             I 3 C 0
s macNem1.NW_012012389v1      246364 61 -   1764207 AACAACACACGCGTTTGATAGAAAACAGACACGAATGGGTCTCCTGGCCACACAGCTCCCT
i macNem1.NW_012012389v1   I 3 C 0
s cerAty1.NW_012009470v1      256285 61 -  16742782 AACAACACACGCGTTTGATAGAAAACAGACACGATTGGGTCTCCTGGCCACACAGCTCCCT
i cerAty1.NW_012009470v1   I 3 C 0
s chlSab2.chr4              90559539 61 -  91010382 AACAACACATGCGTTTGATAGAAAACAGACATGAATGGGTCTCCTGGCCACACAGCTCCCT
i chlSab2.chr4             I 3 C 0
s manLeu1.NW_012110441v1      153657 61 -    438239 AACAACACACGCGTTTGATAGAAAACAGACATGAATGGGTCTCCTGGCCACACAGCTCCCT
i manLeu1.NW_012110441v1   I 3 C 0
s calJac3.chr2             203835206 59 + 204313951 AACAACACACAT--GTGATAGAAAAGAGACATGAATAGTGCTCCTGGCCACACAGCTCCCT
i calJac3.chr2             I 3 I 281
s saiBol1.JH378155          16000372 60 +  16417988 AACAACACACACAGGTGACAG-AAAGAGACATGAATGGGGCTCCTGGCCACACAGCTCCCT
i saiBol1.JH378155         I 3 C 0
s cebCap1.NW_016108158v1       83134 60 +    298490 AACAACACACACATGTGATAG-AAAGAGACATGAATGGGGCTCCTGGCCACACAGCTCCCT
i cebCap1.NW_016108158v1   I 44 C 0
s aotNan1.NW_018503740v1    25411462 61 -  25620257 AACAACACACACATGTGATAGAAAAGAGACGTGAATGGGGCTCCTGGCCACGCAGCTCCCT
i aotNan1.NW_018503740v1   I 39 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=1504991.000000
s hg38.chr5_KI270793v1_alt     53068 182 +    126136 CCCAGAACAGTCGGCCCTGGGGTCGCCACGGGCCCTTCCAGAGCTGTCAGGAGTACACACGATTTCTCTTTGTTTTATACAAACAGAACAAACCCTGTCTCCCACCATGTCTTCTCAACTAACTTGAAATGATGCCTTGGTCATATCCCAAAGTCTTGGTGTTTTGGGGTCTTCCTCTAGAC
s panTro5.chr5             181320382 182 - 181907262 CCCAGAACAGTCGGCCCTGGGGTCGCCACGGGCCCTTCCAGAGCTGTCAGGAGTACACACGATTTCTCTTTGTTTTATACGAACAGAACAAACCCTGTCTCCCACCATGTCTTCTCAACTAACTTGAAATGATGCCTTGGTCATATCCCAAAGTCTTGGTGTTTTGGGGTCTTCTTCTAGAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041163 182 - 183735486 CCCAGAACAGTCGGCCCTGGGGTCGCCACGGGCCCTTCCAGAGCTGTCAGGAGTACACACGATTTCTCTTTGTTTTATACGAACAGAACAAACCCTGTCTCCCACCATGTCTTCTCAACTAACTTGAAATGATGCCTTGGTCATATCCCAAAGTCTTGGTGTTTTGGGGTCTTCTTCTAGAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128148 182 +    698298 CCCAGAACAGTCGGCCCTGGGGTCGCCACAGGCCCTTGCAGAGCTGTCAGGAGTACACACGATTTCTCTTTGTTTTATACGAACAGAACAAACCCTGTCTCCCACCATGTCTTCTCAACTAACTTGAAATGATGCCTTGGTCATATCCCAAAGTCTTGGTGTTTTGGGGTCTTCTTCTAGAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555481 182 - 121039945 CCCAGAACAGTCGGTCCTGGGGTCGACACAGGCCCTTCCAGAGCTGTCAGGGGTACACATGATTTCTCTTTGTTTTATACGAACAGAACAAACCCTGTCTCCCACCACGTCTTCTCAACTAACTTGAAATAATGCCTTGGTCATAACCCAAGGTCTTGGTGTTTTGGGGTCTTTTTCTAGAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179510765 182 - 180051392 CCCGGAGCAGTCGACCCTGGGGCCTCCACGGGCCCTTCCAGAGCTGTCAGGGGTACACACGCTTTCTCTTTGTTTTATACAAACAGAACGAACCCTGTCTCCCACCATGTCTTCTCAACTAACTCGAAATGATGCCTTGGTCATAGCCCAAAGTCTTGGTGTTTTGGGGTCTTTTTCTAGAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244483 182 - 181584905 CCCGGAGCAGTCGACCCTGGGGCCTCCACGGGCCCTTCCAGAGCTGTCAGGGGTACACACGCTTTCTCTTTGTTTTATACGAACAGAACGAACCCTGTCTCCCACCATGTCTTCTCAACTAACTCGAAATGATGCCTTGGTCATAGCCCAAAGTCTTGGTGTTTTGGGGTCTTTTTCTAGAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246425 182 -   1764207 CCCGGAGCAGTCGACCCTGGGGCCTCCACGGGCCCTTCCAGAGCTGTCAGGGGTACACACGCTTTCTCTTTGTTTTATACGAACAGAACGAACCCTGTCTCCCACCATGTCTTCTCAACTAACTCGAAATGATGCCTTGGTCATAGCCCAAAGTCTTGGTGTTTTGGGGTCTTTTTCTAGAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256346 182 -  16742782 CCCAGAACAGTCGACCCTGGGGTCTCCACGGGCCCTTCCAGAGCTGTCAGGGGTACACACGCTTTCTCTTTGTTTTATACGAACAGAACGAACCCTGTCTCCGACCATGTCTTCTCAACTAACTTGAAATGATGCCTTGGTCATAGCCCAAAGTCTTGGTGTTTTGGGGTCTTTTTCTAGAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559600 182 -  91010382 CCCAGAACAGTCGACCCTGGGGCCTCCACGGGCCCTTCCAGAGCTGTCAGGGGTACACACGCTTTCTCTTTGTTTTATACGAACAGAACGAACGCTGTCTCCCACCATGTCTTCTCAACTAACTTGAAATGATGCCTTGGTCATAGCCCAAAGTCTTGGTGTTTTGGGGTCTTTTTCTAGAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      153718 182 -    438239 CCCAGAACAGTCGACCCTGGGGTCTCCACGGGCCCTTCCAGAGCTGTCAGGGGTACACACGCTTTCTCTTTGTTTTATACGAACAGAACGAACCCTGTCTCCCACCATGTCTTCTCAACTAACTTGAAATGATGCCTTGGTCATAGCCCAAAGTCTTGGTGTTTTGGGATCTTTTTCTAGAC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203835546 182 + 204313951 TCCAGAACAGTGGGTGCTGGGGTCACCACGGGCCCTTCCAGAGCCATCTTGGGTGCACACGCTTTCTCTTCATTCTATATAAACAGAGCGAATGCCACCTCCCACCACGTCTTCTCCAGTAACGTGAAATGACACCTTGGCCATAACCCAAAGACTTCGTGTTTTGGGGTCTTTCTCTAGAC
i calJac3.chr2             I 281 C 0
s saiBol1.JH378155          16000432 180 +  16417988 -CCAGAACAGTGGGTGCTGGGGTCGCCACGGGCCCTTGCAGAGCCGTCAAGGGTGCACACACTTTCTCTTCACTTTATAT-AACAGAGTGAATCCCGCCTCCCACCACGTCTTCTCCAGTAATGTGAAATGACGCCTTGGTCATAACCCAAAGTCTTCGTGTTCTGGGGCCTTTCTCTAGAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       83194 181 +    298490 -CCAGAACTGTGGGTGCTGGGGTCACCACGGGCCCTTCCAGAGCCATCAAGGGTGCACACGCTTTCTCTTCACTTTATATAAACAGAGCGAATCCCGCCTCCCACCACGTCTTCTCCAGTAACGTGAAATGACGCCTTGGTCATAACCCAAAGTCTTCGTGTTTTGGGGTCTTTCTCTAGAT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25411523 181 -  25620257 -CCAGAACTGTGGGTGCTGGGGTCACCACGGGCCCTTCCAGAGCCGTCAGGGGAGCACCCGCTTTCTCTTCACTTTATATAAACAGAGCGAATCCCGCCTCCCACCACGTCTTCTCCAGTAACGGGAAATGACTCCTTGGTCATAACCCAAAGTCTTCCTGTTTTGGGGTCTTTCTCTAGAC
i aotNan1.NW_018503740v1   C 0 I 395
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042  37 -    514179 I

a score=216369.000000
s hg38.chr5_KI270793v1_alt     53250 37 +    126136 ATTCATTCCCCTCTGCAGCCTGAACCA-AGGAGGCA-----CT
s panTro5.chr5             181320564 37 - 181907262 ATTCATTCCCCTCTGCAGCCTGAACCA-AGGAGGCA-----CT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041345 37 - 183735486 ATTCATTCCCCTCTGCAGCCTGAACCA-AGGAGGCA-----CT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128330 37 +    698298 ATTCATTCCCCTCTGCAGCCTGAACCA-AGGAGGCA-----CT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555663 37 - 121039945 GTTCATTCCCCTCTGCAGCCTGAGCCA-AGGAGGCA-----CT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179510947 43 - 180051392 GTTCATTCCCCTCTGCAGCCTGAGCCACCCGAGGCATAACCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244665 43 - 181584905 GTTCATTCCCCTCTGCAGCCTGAGCCACCCGAGGCATAACCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246607 43 -   1764207 GTTCATTCCCCTCTGCAGCCTGAGCCACCCGAGGCATAACCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256528 43 -  16742782 GTTCATTCCCCTCTGCAGCCTGAGCCACCCGAGGCATAACCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559782 43 -  91010382 GTTCATTCCCCTCTGCAGCCTGAGCCACCCGAGGCATAACCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      153900 43 -    438239 GTTCATTCCCCTCTGCAGCCTGAGCCACCCGAGGCATAACCCT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203835728 37 + 204313951 GCGAATCCCACTCTGCAGACTTAGCCA-CTGAGGCA-----CT
i calJac3.chr2             C 0 I 3028
s saiBol1.JH378155          16000612 37 +  16417988 GCGCATCCCACTCTGCAGATTGAGCCA-CTGAGGCA-----CC
i saiBol1.JH378155         C 0 I 51
s cebCap1.NW_016108158v1       83375 37 +    298490 GCGCATCCCACTCTGCAGACTGAGCCA-CTGAGGCA-----CT
i cebCap1.NW_016108158v1   C 0 I 5
e aotNan1.NW_018503740v1    25411704 395 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=319821.000000
s hg38.chr5_KI270793v1_alt     53287 50 +    126136 TGTTTCCGTAACGGGCCTGAATGTGACAAGGCGGA-CCCCC-ACAGCTGCTT
s panTro5.chr5             181320601 50 - 181907262 TGTTTCCGTAACGGGCCTGAATGTGACAAGGCGGA-CCCCC-ACAGCTGCTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041382 50 - 183735486 TGTTTCCGTAATGGGCCTGAATGTGACAAGGCGGA-CCCCC-ACAGCTGCTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128367 50 +    698298 TGTTTCCGTAACGGGCCTGAATGTGACAAGGCGGA-CCCCC-ACAGCTGCTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555700 51 - 121039945 TGTTTCCATAACAGGCCTGAGTGAGACAAGGCGGA-CCCCCGACAGCTGCTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179510990 51 - 180051392 TGTTTCCATAACAGGCCTGAGTGTGACAAGGCAGA-CCCCCGATGGCTGCTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244708 51 - 181584905 TGTTTCCATAACAGGCCTGAGTGTGACAAGGCAGA-CCCCCGATGGCTGCTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246650 51 -   1764207 TGTTTCCATAACAGGCCTGAGTGTGACAAGGCAGA-CCCCCGATGGCTGCTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256571 50 -  16742782 TGTTTCCATAACAGGCCTGAGTGTGACAAGGCAGA--CCCCGATGGCTGCTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559825 51 -  91010382 TGTTTCCATAACAGGCCTGAGTGTGACAAGGCAGA-CCCCTGATGGCTGCTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      153943 51 -    438239 TGTTTCCATAACAGGCCTGAGTGTGACAAGGCAGA-CCCCCGATGGCTGCTT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203838793 49 + 204313951 TGCTTCCTCAGCAGGCCTGAGCGTGACAGGGCAGA--TCCC-GCGGCTGCCT
i calJac3.chr2             I 3028 C 0
s saiBol1.JH378155          16000700 50 +  16417988 TGCTTCCTCAACGGGCCTGAGTGTCACAGGGCGGA-CCCCC-ACGGCTACTT
i saiBol1.JH378155         I 51 C 0
s cebCap1.NW_016108158v1       83417 51 +    298490 TGCTTCCTCAAGGGACCTTAGTGTGACAGGGCGGACCCCCC-ACGCCTGCTT
i cebCap1.NW_016108158v1   I 5 I 48
e aotNan1.NW_018503740v1    25411704 395 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=57422.000000
s hg38.chr5_KI270793v1_alt     53337 15 +    126136 CTCTTCCGG-GGCACC
s panTro5.chr5             181320651 15 - 181907262 CTCTTCCGG-GGCACC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041432 15 - 183735486 CTCTTCCGG-GGCACC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128417 15 +    698298 CTCTTCCGG-GGCACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555751 16 - 121039945 CTCTTCCGGAGGCGCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511041 16 - 180051392 CTCTTCCAAAGGTGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244759 16 - 181584905 CTCTTCCAAAGGCGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246701 16 -   1764207 CTCTTCCAAAGGCGCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256621 16 -  16742782 CTCTTCCAGAGGCGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559876 16 -  91010382 CTCTTCCAGAGGCGCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      153994 16 -    438239 CTCTTCCAGAGGCGCC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203838842 15 + 204313951 CTCTTCGGA-GGCGCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16000750  2 +  16417988 CT--------------
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25411704 395 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       83468 48 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=207580.000000
s hg38.chr5_KI270793v1_alt     53352 31 +    126136 CTGCCTATGATCTGTTTAGCCAGAAACTCCT
s panTro5.chr5             181320666 31 - 181907262 CTGCCTATGATCTGTTTAGCCAGAAACTCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041447 31 - 183735486 CTGCCTATGATCTGTTTAGCCAGAAACTCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128432 31 +    698298 CTGCCTATGATCTGTTTAGCCAGAAACTCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555767 31 - 121039945 CTGTCTATGATCTGTTTAGCCAGAAACTCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511057 31 - 180051392 CTGCCAATGATCTGTTTAGCCAGAAACTCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244775 31 - 181584905 CTGCCAATGATCTGTTTAGCCAGAAACTCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246717 31 -   1764207 CTGCCAATGATCTGTTTAGCCAGAAACTCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256637 31 -  16742782 CTGCCAATGATCTGTTTAGCCAGAAACTCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559892 31 -  91010382 CTGCCTATGATCTGTTTAGCCAGAAACTCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154010 31 -    438239 CTGCCTATGATCTGTTTAGCCAGAAACTCCT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203838857 30 + 204313951 CTGGCTGGCATTTGCTTAGCTGGAAA-ACCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16000752 31 +  16417988 CTGGCTAGCATCTGTTAGGCCAGAAACGCCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       83516 31 +    298490 CTGGCTAGCATCTGATTAGCCAGAAACGCCT
i cebCap1.NW_016108158v1   I 48 C 0
e aotNan1.NW_018503740v1    25411704 395 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=627035.000000
s hg38.chr5_KI270793v1_alt     53383 81 +    126136 TTGTTTTGCCTATTTAAACATCAAAAAGAGTTGGTATAGTTTAAAAATATTCTTTTGGACCATTT-ATTGGGACCTTAAAT-C
s panTro5.chr5             181320697 81 - 181907262 TTGTTTTGCCTATTTAAACATCAAAAAGAGTTGGTATAGTTTAAAAATATTCTTTTGGACCATTT-ATTGGGACCTTAAAT-C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041478 81 - 183735486 TTGTTTTGCCTATTTAAACATCAAAAAGAGTTGGTATAGTTTAAAAATATTCTTTTGGACCATTT-ATTGGGACCTTAAAT-C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128463 81 +    698298 TTGTTTTGCCTATTTAAACATCAAAAAGAGTTGGTATAGTTTAAAAATATTCTTTTGGACCATTT-ATTGGGACCTTAAAT-C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555798 81 - 121039945 TTGTTTTGCCTATTTAAACGTGAAAAAGAGTTGGTATAGTTTTAAAATGTTCTTTTGGACCATTT-ATTGGGACGTTAAAT-C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511088 81 - 180051392 TTGTTTTCCCTATTTAAACTTCAAAAAGAGTTGATGTAGTTTAAAAATATTCTTTTGGGCCATTT-ATTGGGACCTTAAAC-C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244806 81 - 181584905 TTGTTTTCCCTATTTAAACTTCAAAAAGAGTTGATGTAGTTTAAAAATATTCTTTTGGGCCATTT-ATTGGGACCTTAAAC-C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246748 82 -   1764207 TTGTTTTCCCTATTTAAACTTCAAAAAGAGTTGATGTAGTTTAAAAATATTCTTTTGGGTCATTTAATTGGGACCTTAAAC-C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256668 81 -  16742782 TTGTTTTCCCTATTTAAACTTCAAAAAGAGTTGATGTAGTTTAAAAATATTCTTTTGGACCATTT-ATTGGGACCTTAAAC-C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90559923 81 -  91010382 TTGTTTTCCCTATTTAAACTTCAAAAAGAGTTGATGTAGTTTAAAAATATTCTTTTGGACCATTT-ATTGGGACCTTAAAC-C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154041 81 -    438239 TTGTTTTCCCTATTTAAACTTCAAAAAGAGTTGATGTAGTTTAAAAATATTCTTTTGGACCATTT-ATTGGGACCTTAAAC-C
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203838887 78 + 204313951 TTGTTCTGTTCATTTAAACTTCGATAGAAGCTG--GTAGTTTAAAAATATTCCTTTGGACCATTT-ATGGGGACCTTAAAT--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16000783 78 +  16417988 TTGTTCTGTTCATTTAAACTTCAAAAAGAGCTG--GTAATTTAAAAATATTCTTTTGGACCATTT-ATTGGGACCTTAAAT--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       83547 78 +    298490 TTGTTTTGTTCATTTAAACTCCAAAAAGAGCTG--GTAGTTTAAAAATATTCTTTTGGACCATTT-ATTGGGACCTCAAAT--
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25412099 79 -  25620257 TTGTTTTGTCCATTTAAACTTCAAAAAGAGCTG--GTAGTTGAAAAATATTCTTTTGGACCATTT-ATTGGGACCTTAAATC-
i aotNan1.NW_018503740v1   I 395 I 4
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=95880.000000
s hg38.chr5_KI270793v1_alt     53464 26 +    126136 CACAGAATGAGTCAGCTGTAACTTGA
s panTro5.chr5             181320778 26 - 181907262 CATAGAATGAGTCAGCTGTAACTTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041559 26 - 183735486 CATAGAATGAGTCAGCTGTAACTTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128544 26 +    698298 CATAGAATGAGTCAGCTGTAACTTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555879 26 - 121039945 CATAGAATGAGTTAGCTGTAAGTTGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511169 26 - 180051392 TACAGAATGAGTCAGCTGTAACTTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244887 26 - 181584905 TACAGAATGAGTCAGCTGTAACTTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246830 26 -   1764207 TACAGAATGAGTCAGCTGTAACTTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256749 26 -  16742782 TACAGAATGAGTCAGCTGTAACTTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90560004 26 -  91010382 TATAGAATGAGTCAGCTGTAACTTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154122 26 -    438239 TACAGAATGAGTCAGCTGTAACTTGA
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203838965  5 + 204313951 ---------------CTTTG------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16000861  5 +  16417988 ---------------CTTTG------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       83625  5 +    298490 ---------------CTTTG------
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25412178  4 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=837925.000000
s hg38.chr5_KI270793v1_alt     53490 104 +    126136 TCTTTCTGAAGAAAGTCTTTCTGTCCAGGTATTCTATACCCTTAGATTTGGTCACT----TATTTCTGGCCCTCTCAGTCGCATTTTAAAGTTTCCTTCATGTAGATT
s panTro5.chr5             181320804 104 - 181907262 TCTTTCTGAAGAAAGTCTTTCTGTCCAGGTATTCTATACCCTTAGATTTGGTCACT----TATTTCTGGCCCTCTCAGTCGCATTTTAAAGTTTCCTTCATGTAGATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041585 104 - 183735486 TCTTTCTGAAGAAAGTCTTTCTGTCCAGGTATTCTATACCCTTAGATTTGGTCACT----TATTTCTGGCCCTCTCAGTCGCATTTTAAAGTTTCCTTCATGTAGATT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128570 104 +    698298 TCTTTCTGAAGAAAGTCTTTCTGTCCAGGTATTCTATACCCTTAGATTTGGTCACT----TATTTCTGGCGCTCTCAGTCGCATTTTAAAGTTTCCTTCATGTAGATT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120555905 104 - 121039945 TCTTTCTGAAGAAAGTCCTTCTGTCCAGATGTTCTATACCCTTAGATTTGGTCACA----TATTTCTGGCCCTCTCAGTTGCATTTTAAAGTTTCCTTCATGTAGATT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511195 104 - 180051392 TCTTTCTGAAGAAAGTCTTTCTGTCCAGGTATTCTATGCCCTTAGATTTGGTCACA----TATTTCTGGCCCTCTCAGTCTCATTTTAAAGTTTCCTTCATGTAGATT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181244913 104 - 181584905 TCTTTCTGAAGAAAGTCTTTCTGTCCAGGTATTCTATGCCCTTAGATTTGGTCACA----TATTTCTGGCCCTCTCAGTCGCATTTTAAAGTTTCCTTCATGTAGATT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246856 104 -   1764207 TCTTTCTGAAGAAAGTCTTTCTGTCCAGGTATTCTATGCCCTTAGATTTGGTCACA----TATTTCTGGCCCTCTCAGTCTCATTTTAAAGTTTCCTTCATGTAGATT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256775 104 -  16742782 TCTTTCTGAAGAAAGTCTTTCTGTTAGGGTATTCTATGCCCTTAGATTTGGTCACA----TATTTCTGGCCCTCTCAGTCGCATTTTAAAGTTTCCTTCATGTAGATT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90560030 104 -  91010382 TCTTTCTGAAGAAAGTCTTTCTGTCCAGCTATTCTATGCCCTTAGATTTGGTCACA----TATTTCTGGCCCTCTCAGTCGCATTTTAAAGTTCCCTTCATGTAGATT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154148 104 -    438239 TCTTTCTGAAGAAAGTCTTTCTGTCAGGGTGTTCTATGCCCTTAGATTTGGTCACA----TATTTCTGGCCCTCTCAGTCGCATTTTAAAGTTTCCTTCATGTAGATT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203838970 103 + 204313951 TCTTTTTGAAGGAAGTCTTTGAGTCCAGGGATTCTATGCTCTTAGATCCGTTCACA----TGTTTCTGGCCC-CTCGATGGCATTTTAAAGCCTCCTTCACGTAGATT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16000866 103 +  16417988 TCTTTTTGAAGAAAGTCTTAGAGTCCAGGGGTTCTGTGCCCTTAGACTTGTTCACA----TGTTTCTGGCCC-CTCAATGGCATTTTAAAGCTTCCTGCAGGTAGATC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       83630 101 +    298490 TCTTTTTGAAGAAAGTCTTTGAGTCCAGGGTTTCTATGCCCTTAGATTTGGTCAC------GTTTCTGGCCC-CTCAGTGGCATTTTAAAGCTTCCTTCACGTAGATT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25412182 107 -  25620257 TCTTTTTGAAGAAAGTCTTTGAGTCCAGGGATTCTGTGCCCTTAGATTCGTTCACATATTTATTTCTGGCCC-CTTAATGGCATTTTAAAGCTTCCTTCATGTAGATT
i aotNan1.NW_018503740v1   I 4 I 170
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042  37 -    514179 I

a score=119089.000000
s hg38.chr5_KI270793v1_alt     53594 19 +    126136 TGAAGTCTTTAGTCATCCT
s panTro5.chr5             181320908 19 - 181907262 TGAAGTCTTTAGTCATCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041689 19 - 183735486 TGAAGTCTTTAGTCATCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128674 19 +    698298 TGAAGTCTTTAGTCATCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120556009 19 - 121039945 TGAAGTCTTTAGTTATCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511299 19 - 180051392 TGAAGTCTTCGGTTATCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181245017 19 - 181584905 TGAAGTCTTCGGTTATCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246960 19 -   1764207 TGAAGTCTGCGGTTATCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256879 19 -  16742782 TGAAGTCTTCGGTTGTCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90560134 19 -  91010382 TGAGGTCTTCGGTTATCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154252 19 -    438239 TGAAGTCTTCGGTTATCCT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203839073 19 + 204313951 TGGTGGCTCCGGTCATCCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16000969 19 +  16417988 TGATGTCTCCGTTCATCCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       83731 19 +    298490 TGATGCCTCCGTTCATCCT
i cebCap1.NW_016108158v1   C 0 I 160
e aotNan1.NW_018503740v1    25412289 170 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=921592.000000
s hg38.chr5_KI270793v1_alt     53613 155 +    126136 AGCGATTCCTCACTAGCGTTACGGTGTCAGGGAAGACTAGCCGTGCCGGAGAGGATGGCTCACGCCCGTTCACCCTTCTACCATCTCTGCTGTTGGCATCGTACAAACGTCACATGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcaggg-
s panTro5.chr5             181320927 155 - 181907262 AGCGATTCCTCACTAGCGTTACGGTGTCAGGGAAGACTGGCCGTGCCGGAGAGGATGGCTCACGCCCGTTCACCCTTCTACCATCTCTGCTGTTGGCATCATACCAACGTCACATGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcaggg-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041708 155 - 183735486 AGCGATTCCTCACTAGCGTTACGGTGTCAGGGAAGACTGGCCGTGCCGGAGAGGATGGCTCACGCCCGTTCACCCTTCTACCATCTCTGCTGTTGGCATCATACAAACGTCACATGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcaggg-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128693 155 +    698298 AGCGATTCCTCACTAGCGTTACGGTGTCAGGGAAGACTGGCCGTGCCGGAGAGGATGGCTCACGCCCGTTCACCCTTCTACCATCTCTGCTGTTGGCACCGTACAAACGTCACATGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcaggg-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120556028 155 - 121039945 AGCGATTCCTCACCAGCGTTACGGTGTCAGGGAAGACTGGCCGTGCCAGAGAGGATGGCTCACGCCCATTCACCCTTCTACCATTTTTGCTGTTGGCATCGTACAAATGTCACATGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcaggg-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511318 155 - 180051392 AGCGATTCCTCACCGGCGTTACGGTGTCAGGGAAGACTGGCCGTGCCGGAGAGGATGGCTCATGCCCGTTCACCCTTCTACCATTTTTGCTGTTGGCATCGTACAAATGTCACGTGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcaggg-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181245036 155 - 181584905 AGCGATTCCTCACCGGCGTTACGGTGTCAGGGAAGACTGGCCGTGCCGGAGAGGATGGCTCATGCCCGTTCACCCTTCTACCATTTTTGCTGTTGGCATCGTACAAATGTCACGTGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcaggg-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      246979 155 -   1764207 AGCGATTCCTCACCGGCGTTACGGTGTCAGGGAAGACTGGCCGTGCCGGAGAGGATGGCTCATGCCCGTTCACCCTTCTACCATTTTTGCTGTTGGCATCATACAAATGTCACGTGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcaggg-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      256898 155 -  16742782 AGCGATTCCTCACCAGCGTTACGGTGTCAGGGAAGACTGGCCGTGCCGGAGAGGATGGCTCATGCCCGTTCACCCTTCTACCATTTTTGCTGTTGGCATCGTACAAATGTCACGTGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcagcg-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90560153 155 -  91010382 AGCGATTCCTCACTAGCGTTACGGTGTCAGGGAAGACTGGCCGTGCCGGAGAGGATGGCTCATGCCCGTTCACCCTTCTACCATTTTTGCTGTTGGCATCGTACAAACGTCATGGGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcaggg-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154271 155 -    438239 AGCGATTCCTCACCAGTGTTACGGTGTCAGGGAAGATTGGCCGTGCCGGAGAGGATGGCTCATGCCCATTCACCCTTCTACCATTTTTGCTGTTGGCATCGTACAAACGTCACGTGACAACCCAGCACTGTCACTGAAGTTCCTTTAGCCcaggg-
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203839092 155 + 204313951 GGAGCGTCCTCACCGGCGCTGCAGTGTGAGGGAGCCCTGGTTGTGCAGGAGCGGGTGGCTCACGCCCATGCACCTTTCCG-CGTTTCCGCTGTTGGCGTCGCAGCAATGTGGCCTGACCACCCGGCACGGTCGTCCATGTTCCGTCAGCCCCCgga
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16000988 150 +  16417988 GGGGTGTCCTCAGGGGCGCCGCGGTGTGAGGGAACCCTGGCTGTGCAGGAGTGGGTGGCTCACGCCCA------TTGCCGCCGTTTCTGCTGTTGGCATCACACCGATGTTGCCTGACCACCCAGCGTGGTCACCCATGTTCCATCAGCCCCCgga
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25412289 170 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       83750 160 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042  37 -    514179 I

a score=81314.000000
s hg38.chr5_KI270793v1_alt     53768 11 +    126136 gtgtccaatct
s panTro5.chr5             181321082 11 - 181907262 gtgtccaatct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041863 11 - 183735486 gtgtccaatct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128848 11 +    698298 gtgtccaatct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120556183 11 - 121039945 gggtccaatct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511473 11 - 180051392 gtgcccaatct
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181245191 11 - 181584905 gtgcccaatct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      247134 11 -   1764207 gtgcccaatct
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      257053 11 -  16742782 gtgcccaatct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90560308 11 -  91010382 gtgcccaatct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154426 11 -    438239 gtgcccaatct
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203839247 11 + 204313951 gtgcccagtct
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16001138 11 +  16417988 gggtccgatct
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25412459 11 -  25620257 gtgtccaatct
i aotNan1.NW_018503740v1   I 170 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       83750 160 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=1525427.000000
s hg38.chr5_KI270793v1_alt     53779 223 +    126136 tttggcttcccttggccacattggaagaagaagaattgtcttgggccacacataaaacacactaaca----cgatagctgatgagctaaaagaaaaaaaaaatca-caa---aaaaaatctcattatgttttaaggaaagttta-caaatgtgtcttgggccgcattcaaagccatcctgggccacatgtggcccacaggtcaagaggaggacaagctcgCTTCAGCAAGTC
s panTro5.chr5             181321093 220 - 181907262 tttggcttcccttggccacattagaagaagtagaattgtcttgggccacacataaaacacactaaca----cgatagctgatgagctaaaag---aaaaaaatca-caa---aagaaatctcattatgttttaaggaaagttta-caaatgtgtcttgggccgcattcaaagccatcctgggccacatgtggcccacaggtcaggaggaggacaagctcgCTTCAGCCAGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183041874 221 - 183735486 tttggcttcccttggccacattggaagaagaagaattgtcttgggccacacgtaaaacacactaaca----cgatagctgatgagctaaaag--aaaaaaaatca-caa---aagaaatctcattatgttttaaggaaagttta-caaatgtgtcttgggccgcattcaaagccatcctgggccacatgtggcccacaggtcaggaggaggacaagctcgCTTCAGCCAGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      128859 221 +    698298 tttggcttcccttggccacattggaagaagaagaattgtcttgggccacacataaaacacactaaca----cgatagctgatgagctaaaag--aaaaaaaatca-caa---aaagaatctcattatgttttaaggaaagttta-caaatgtgtcttgggccacattcaaagccatcctgggccacatgtggcccacaggtcaagaggaggacaagctcgCTTCAGCCAGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120556194 222 - 121039945 tttggcttcccttggtcacattggaagaagaagaattgtcttgggccacacataaaacacactaaca----tgatagctgatgagctaaaag-aaaaagaaatca-caa---aaaaaatctcattatgttttaaggaaagttta-caaatatgtcttgggctgcactcaaagccatcctgggccacaagtggcccacgagtcaagaggaggacaagcttgCTTCAGCCAGTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511484 216 - 180051392 tttggcttcccttggacacattg---gaagaagaactgtcttggaccacacataaaacacactaaca----cgagaggtgatgagctaaaag---aaaaaaatca-caa---aa--aatctcataacgttttaaggaaagtttaccaaatgtgtctcgggccacattcaaagccgtcctgggccacatgcagcccatgggccaggaggaggacacgcttgCTTCAGCCGGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181245202 216 - 181584905 tttggcttcccttggacacattg---gaagaagaactgtcttggaccacacataaaacacactaaca----cgagaggtgatgagctaaaag---aaaaaaatca-caa---aa--aatctcataacgttttaaggaaagtttaccaaatgtgtctcgggccacattcaaagccgtcctgggccacatgcagcccatgggccaggaggaggacacgcttgCTTCAGCCGGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      247145 216 -   1764207 tttggcttcccttggacacattg---gaagaagaactgtcttggaccacacataaaacacactaaca----cgagaggtgatgagctaaaag---aaaaaaatca-caa---aa--aatctcataacgttttaaggaaagtttaccaaatgtgtctcgggccacattcaaagccgtcctgggccacatgcagcccatgggccaggaggaggacacgcttgCTTCAGCCGGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      257064 216 -  16742782 tttggcttcccttggacacattg---gaagaagaactgtcttggaccacacataaaacacactaacc----cgagaggtgatgagctaaaag---aaaaaaacca-caa---aa--aatctcataacgttttaaggaaagtttaccaaatgtgtctcgggccacattcaaagccgtcctgggccatgtgcagcccacgggccaggaggaggacacgcttgCTTCAGCTGGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90560319 217 -  91010382 tttgacttcccttggacacattg---gaagaagaactgtcttggaccacacataaaacacactaaca----cgagaggtgatgagctaaaag---aaaaaattcaccaa---aa--aatctcataccgttttaaggaaagtttaccaaatgtgtctcgggccacattcaaagccgtcctgggccatgtgcagcccacgggccaggaggaggacacgcttgCTTCAGCCGGTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154437 213 -    438239 tttggcttcccttggacacattg------gaagaactgtcttggaccacacataaaacacactaaca----cgagaggtgatgagctaaaag---aaaaaaatca-caa---aa--aatctcataacgttttaaggaaagtttaccaaatgtgtctcgggccacattcaaagccgtcctgggccacatgcagcccacgggccaggaggaggacacgcttgCTTCAGCCGGTG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203839258 201 + 204313951 ttgggcttccctggaccacgctg---gaaggagaagtatcttgcgcaacacataaa--acacaaacactcccaatcactgacgagctaaaag---aagaaaatca-cag---aa--aatctc---atgttttaacagaagttta-cagatgtgtgttggcccac------------cctgggccacgggtggcccacgggcGCATAGCAGGACCAGCTCAC-GTAGCCCGTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16001149 222 +  16417988 tttggcttcctttgaccacagtg---gaaggaaaattgtcttgggccacacgtaaaacacacaaacactcacaatcactgatgagctaaaag---aagaaaatca-cagaaaaa--aatctcacaatgttttaacagaagttta-caaatgtgtgttgggccgcattcaaagccatcctgagccacgcgtggcccgcgggcacacagtaggaccagcttgCTTTATCCAGTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       83910 220 +    298490 tttggcttcctttgactgcactg---gaaggagaattgtcttgggccacacataaaacacacaaacactcacaatcactgatgagctaaaag---aagaaaatca-cag--aaa--aatctcataatgttttaacaaaagttaa-caaatgtgtgttgggctgcattcaaagccatcctgggccacgtgtggcccgcgggcacatagtaggaccagcttgCTTTACCCAGTC
i cebCap1.NW_016108158v1   I 160 C 0
s aotNan1.NW_018503740v1    25412470 219 -  25620257 tttggcttcctttgaccacactg---gaaagagaattgtcttgggccacacataaaacacacaaacactcacaatcgctgatgagctaaaag---aag-aaatca-cag--aaa--aatctcataatgttttaacaaaagtgta-caaatgtgtgttgggccgcactcaaagccatcctgggccacgcgtggcccgcgggcgcatagtaggaccagcttgCTTTACCCAGTC
i aotNan1.NW_018503740v1   C 0 I 52
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042  37 -    514179 I

a score=299725.000000
s hg38.chr5_KI270793v1_alt     54002 54 +    126136 AGTAATTGCCAGTGCTGAATTTGCCGCATAAGGACTCGGCCCttccctgttccc
s panTro5.chr5             181321313 54 - 181907262 AGTAATTGCCACTGCTGAATTTGCCGCGTAAGGACTCGGCCCttccctgttccc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183042095 54 - 183735486 AGTAATTGCCACTGCTGAATTTGCCGCGTAAGGACTCGGCCCttccctgttccc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      129080 54 +    698298 AGTAATTGCCAGTGCTGAATTTGCCGCATAAGGACGCGGCCCttccctgttccc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120556416 54 - 121039945 AGTAATTGCCAGCACCGAATTTGCTGCATAAGGACTCAGCCCttccctgttccc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511700 54 - 180051392 AGTAATTGCTGGCGCTGAGTTTGCCGCATAGGGACCCGGCCCTTTGCTGTTCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181245418 54 - 181584905 AGTAATTGCTGGCGCTGAGTTTGCCGCATAGGGACCCGGCCCTTTGCTGTTCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      247361 54 -   1764207 AGTAATTGCTGGCGCTGAGTTTGCCGCATAGGGACCCGGCCCTTTGCTGTTCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      257280 54 -  16742782 AGTAATTGCTGGCGCTGAGTTTGCCGCATAGGGACCCGGCCCTTTGCTGTTCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90560536 53 -  91010382 AGTAATTGCTGGCACTGAGTTTGCCGCATAGGGACccggcccttc-ctgttccc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154650 54 -    438239 AGTAATTGCTGGCGCTGAGTTTGCCGCATAGGGACCCGGCCCTTTGCTGTTCCC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203839459 53 + 204313951 AGGAATCGCCAGCCCCAAACTTGCCGTGTAACCACCCAACCCTCCTGTGCCCC-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16001371 53 +  16417988 AGAAACCGCCAGCCCCAAATTTGCCGCGTAACCACCCAACCCTCCCGTGCTCC-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       84130 53 +    298490 AGAAATGGCCCACCCCAGATTTGCCGCATAACCACCCAGCCCTCCTGCGCTCC-
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25412689 52 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=1300806.000000
s hg38.chr5_KI270793v1_alt     54056 164 +    126136 agcccaaggtcgttctc-cttcagctgaacattttcctttatgatttccacactcgaattctgctggcaacaaatgctttttatcgtctgacaatatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtataaaattctgggtttgtggatttggg
s panTro5.chr5             181321367 164 - 181907262 agcccaaggttgttctc-cttcagctgaacattttcctttatgatttccacacttgaattctgctggcaacaaatgctttttatcgtctgacaatatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtataaaattctgggtttgcggagttggg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183042149 164 - 183735486 agcccaaggttgttctc-cttcagctgaacattttcctttatgatttccacacttgaattctgctggcaacaaatgctttttatcgtctgacaatatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtataaaattctgggtttgcggagttggg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      129134 164 +    698298 agcccaaggtcgttctc-cttcggctgaacattttcctttgtgatttccacactcgaattctgctggcaacaaatgctttttatcgtctgacaatatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtataaaattctgggtttgtggatttggg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120556470 164 - 121039945 agcccaaggtcattctc-cttcagctgaacattttcctttatgatttccacacttgaattctgctggcaacaaatgctttttatcgtctgacaatatctg------------tatttacccttcatgtctgaaggacgtttttgttctgtataaaattctgggtttgcggATCTGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511754 163 - 180051392 AGCCCAAGGCTGttctc-cttcagctgaacagtttcctttatgatttccaca-ttgaattctgctggcaacaaatgctttttatcgtctgacattatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtataaaattctgggtttgcggatttggg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181245472 163 - 181584905 AGCCCAAGGCTGttctc-cttcagctgaacagtttcctttatgatttccaca-ttgaattctgctggcaacaaatgctttttatcgtctgacattatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtataaaattctgggtttgcggatttggg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      247415 163 -   1764207 AGCCCAAGGCTGttctc-cttcagctgaacagtttcctttatgatttccaca-ttgaattctgctggcaacaaatgctttttatcgtctgacattatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtataaaattctgggtttgcggatttggg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      257334 163 -  16742782 AGCCCAAGGCTGttctc-cttcagctgaacagtttcctttatgatttccaca-ttgaattctgctggcaacaaatgctttttatcgtctgacattatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtataaaattctgggtttgcggatttggg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90560589 164 -  91010382 agcccaaggctgttctc-cttcagctgaacattttcctttatgatttccacacttgaattctgctggcaacaaatgttttttatcgtctgacaatatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtataaaattctgggtttgcggatttggg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154704 163 -    438239 AGCCCAAGGCTGttctc-cttcagctgaacagtttcctttatgatttccaca-ttgaattctgctggcaacaaatgctttttatcgtctgacattatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtataaaattctgggtttgcggatttggg
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203839512 144 + 204313951 AGCCCAAGGCGGTTCTCTCAAAAGGTGGACGTTTTCC------------TCCCCTCAATACTGCTGCCAACAAATG-------------------ATTTGATNNNNNNNNNNTATTTACCCTTCATGTTTGAAGACCGTTTTTGCTCTGTATGAAATTCTGGGT-TGCGGATGT-GG
i calJac3.chr2             C 0 I 4
s saiBol1.JH378155          16001424 163 +  16417988 AGCGCAAGGCGGTTCTC-CTTAAGCTGCCCGCTttcctttatgatttcttcacttgaatacggctggcaacaaatgctttttattttctgacaatatctg------------tatttacccttcgtgtttgagggacg-ttttgttctgtatgaaattctgggtGTGCGGATGTGGG
i saiBol1.JH378155         C 0 I 4
s cebCap1.NW_016108158v1       84183 164 +    298490 AGCCCAAGGCGGttctc-cttcagcgggacgttttcttttatgatttcctcccttgaatactgctggcaacaaacgctttttatttcctgacaatatctg------------tatttacccttcgtgtttgaaggacgtttttgttccgtatgaaattctgggttTGCGGATGTGGG
i cebCap1.NW_016108158v1   C 0 I 165
s aotNan1.NW_018503740v1    25412741 164 -  25620257 AGGCCAAGGCGGttctc-cttaagctggacgttttcctttatgatttcctcacttgaatgctgctggcaacaaatgccttttattttctgagaatatctg------------tatttacccttcatgtttgaaggacgtttttgttctgtgtgaaattctgggttCGCGGATGTGGG
i aotNan1.NW_018503740v1   I 52 I 4
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042  37 -    514179 I

a score=325299.000000
s hg38.chr5_KI270793v1_alt     54220 50 +    126136 ttttgttTATTGGTGGT-GTCTGGTTTCGTCAGCTTGCAGAAGCCGC--CTT-T
s panTro5.chr5             181321531 50 - 181907262 ctttgtttattggcagt-gtctggtttcgtcagcttgcagaagccgc--ctt-t
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183042313 50 - 183735486 ctttgtttattggtggt-gtctggtttcgtcagcttgcagaagccgc--ctt-t
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      129298 50 +    698298 ttttgttTATTGGTGGT-GTCTGGTTTCGTCAGCTTGCAGAAGCCGC--CTT-T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120556634 51 - 121039945 -TTTGTTTATTGGCGGT-GTCTGGTTTCGTCGGCTTGCAGAAGCCGCGTCTT-T
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179511917 50 - 180051392 ctttgtttattggtggt-gtctggtttcatcagctcacagaagccac--ctt-t
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181245635 50 - 181584905 ctttgtttattggtggt-gtctggtttcatcagctcgcagaagccac--ctt-t
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      247578 50 -   1764207 ctttgtttattggtggt-gtctggtttcatcagctcgcagaagccac--ctt-t
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      257497 50 -  16742782 ctttgtttattggtggt-gtctggtttcatcagctcgcagaagccac--ctt-t
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90560753 50 -  91010382 ctttgtttattggtggt-gtctggtttcatcagcttgcagaagccac--ctt-t
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      154867 50 -    438239 ctttgtttattggtggt-gtctggtttcatcagctcgtagaagccac--ctc-t
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203839660 50 + 204313951 CTTTGTTTATTGGAGAGAGTCTGGTTTCGTCAGCTCGCAGAGGCTGC--CTT--
i calJac3.chr2             I 4 C 0
s saiBol1.JH378155          16001591 50 +  16417988 CTTTGTTTATTGGAGGCAGGCTGGTTTTGTCAGCTCGCAGAGGCTGC--CTT--
i saiBol1.JH378155         I 4 C 0
s aotNan1.NW_018503740v1    25412909 51 -  25620257 CTTTGTTCATTGGAGGGAGTCTGGTTTCGTCGGCTCGCAGAGGCTGC--CTCT-
i aotNan1.NW_018503740v1   I 4 I 84
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       84347 165 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=156256.000000
s hg38.chr5_KI270793v1_alt     54270 28 +    126136 TCGTTTTCAGACCCCATTGTCTCCGGGC
s panTro5.chr5             181321581 28 - 181907262 tcgttttcagaccccattgtctccgggc
i panTro5.chr5             C 0 I 83
s panPan2.chr5             183042363 28 - 183735486 tcgttttcagaccccattgtctccgggc
i panPan2.chr5             C 0 I 83
s gorGor5.CYUI01015805v1      129348 28 +    698298 TCGTTTTCAGACCCCATTGTCTCCGGGC
i gorGor5.CYUI01015805v1   C 0 I 83
s nomLeu3.chr6             120556685 28 - 121039945 TCGTTTTCAGACCCCGTTGTCTCTGGGC
i nomLeu3.chr6             C 0 I 83
s rheMac8.chr6             179511967 28 - 180051392 tcgttttcagaccccattgtctccgcac
i rheMac8.chr6             C 0 I 80
s macFas5.chr6             181245685 28 - 181584905 tcgttttcagaccccattgtctccgcac
i macFas5.chr6             C 0 I 80
s macNem1.NW_012012389v1      247628 28 -   1764207 tcattttcagaccccattgtctccgcac
i macNem1.NW_012012389v1   C 0 I 80
s cerAty1.NW_012009470v1      257547 28 -  16742782 tcgttttcagaccccattgtctccgcac
i cerAty1.NW_012009470v1   C 0 I 83
s chlSab2.chr4              90560803 28 -  91010382 tcgttttcagaccccattgtctccactc
i chlSab2.chr4             C 0 I 83
s manLeu1.NW_012110441v1      154917 28 -    438239 tcgttttcagaccccattgtctccgcac
i manLeu1.NW_012110441v1   C 0 I 83
s calJac3.chr2             203839710 27 + 204313951 TCATGCTCCGACCCC-TTGTCTCGGTGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16001641 26 +  16417988 TCATGCTCCGACCCC--TGTCTCCGTGC
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25412960 84 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       84347 165 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I
e colAng1.NW_012118799v1      185042 37 -    514179 I

a score=-42494.000000
s hg38.chr5_KI270793v1_alt     54298   6 +    126136 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
s panTro5.chr5             181321692   6 - 181907262 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
i panTro5.chr5             I 83 C 0
s panPan2.chr5             183042474   6 - 183735486 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
i panPan2.chr5             I 83 C 0
s gorGor5.CYUI01015805v1      129459   6 +    698298 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
i gorGor5.CYUI01015805v1   I 83 C 0
s nomLeu3.chr6             120556796   6 - 121039945 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
i nomLeu3.chr6             I 83 C 0
s rheMac8.chr6             179512075   6 - 180051392 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
i rheMac8.chr6             I 80 C 0
s macFas5.chr6             181245793   6 - 181584905 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
i macFas5.chr6             I 80 C 0
s macNem1.NW_012012389v1      247736   6 -   1764207 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
i macNem1.NW_012012389v1   I 80 C 0
s cerAty1.NW_012009470v1      257658   6 -  16742782 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
i cerAty1.NW_012009470v1   I 83 C 0
s chlSab2.chr4              90560914   6 -  91010382 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
i chlSab2.chr4             I 83 C 0
s manLeu1.NW_012110441v1      155028   6 -    438239 ------------------------------------------------------------------------------------------------------------------------------CAGTGA
i manLeu1.NW_012110441v1   I 83 C 0
s colAng1.NW_012118799v1      185079   6 -    514179 ------------------------------------------------------------------------------------------------------------------------------CAGCGA
i colAng1.NW_012118799v1   I 37 C 0
s calJac3.chr2             203839737 103 + 204313951 CACGTCCTGCAGCGTGGCTCCTGTGGACGTGGCTCCTGACCGTGTGTCTCGTTTCTTTGGTTGCATTGAG----------------------------GATTTCCCTCGACCTCGGCAGGCGG-TACAGCGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16001667  89 +  16417988 CACGTCCTCCAG---------------CGTCGCTCCTGACC----------------------------GTGTGCCTCTTTTCTGTGGTTGCCTTTAGGACTTCCCTCCCCCTCTGGTGGCAGCCACGGCAG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25412960  84 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       84347 165 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I

a score=1428575.000000
s hg38.chr5_KI270793v1_alt     54304 171 +    126136 TCAGCCACACCCTTCCCCTGGGGGCTCCTCACTTCTGGTGGCTTAATTCAATCGGGTGTCTATGTATCCTCAGCTTTCTGGCGGG----------TT---TTTTTTTTTATTGTGAATTTATAGCTTATGTGGCTTGTTTAGGTTG-TTGGTGAAAATAGGCTCTTGAGACTTTCTATATTGTA-G
s panTro5.chr5             181321698 169 - 181907262 TCAGCCACACCCTTCCCCTGggggctcctcacttctggtggcttaattcaatggggtgtctgtgtatcctcagctttctggcggg---------------ttttttttaattgtgaatttatagcttatgtggcttgtttaggttg-ttggtgaaaataggctcttgagactttctatattgta-g
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183042480 168 - 183735486 TCAGCCACACCCTTCCCCTGGGGGCTCCTCACTTCTGGTGGCTTAATTCAATGGGGTGTCTGTGTATCCTCAGCTTTCTGGCGGG----------------TTTTTTTTATTGTGAATTTATAGCTTATGTGGCTTGTTTAGGTTG-TTGGTGAAAATAGGCTCTTGAGACTTTCTATATTGTA-G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      129465 173 +    698298 TCAGCCACACCCTTCCCCTGGGGGCTCCTCACTTCTGGTGGCTTAATTCAATCGGGTGTCTGTGTATCCTCAGCTTTCTGGCGGG-----G---TTT---TTTTTTTTTATTGTGAATTTATAGCTTATGTGGCTTGTTTAGGTTG-TTGGTGAAAATAGGCTCTTGAGACTTTCTATATTGTA-G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120556802 173 - 121039945 TCAGCCACGCCCTTCCCCTGGGGCCTCCTCACTTCTGGTGGCTTAATTCAATCGGGTGTCTGTGTATCCTCAGCTTTCTGGTGGG-----T---TTT---TTTTTTTTAATTGTGAATTTATAGCTTATGTGGCTTGTTTAGGTTG-TCGGTGAAAATAGCCTCTTGAGACTTTCTACGTTGTA-G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179512081 172 - 180051392 TCAGTCACGCCCTTCCCCTGGGGGCTCCTCACTGCTGGTGGCTTAATTCACTCGGGTGTCTGTGTATCCTCAGCTTTCCGGCGGG----------TT---TTTTTTTTAATTGCGAATTTATAGCTTATGTGGCTTGTTTAGGTTATTTGGTGAAAATAGTCTCTTGAGACTTTCTGCATTGTA-G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181245799 172 - 181584905 TCAGTCACGCCCTTCCCCTGggggctcctcactgctggtggcttaattcactcgggtgtctgtgtatcctcagctttccggcggg----------tt---ttttttttaattgcgaatttatagcttatgtggcttgtttaggttatttggtgaaaatagtctcttgagactttctgcattgta-g
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      247742 172 -   1764207 TCAGTCACGCCCTTCCCCTGGGGGCTCCTCACTGCTGGTGGCTTAATTCACTCGGGTGTCTGTGTATCCTCAGCTTTCCGGCGGG----------TT---TTTTTTTTAATTGCGAATTTATAGCTTATGTGGCTTGTTTAGGTTATTTGGTGAAAATAGTCTCTTGAGACTTTCTGCATTGTA-G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      257664 175 -  16742782 TCAGTCACGCCCTTCCCCTGggggctcctcactgctggtggcttaattcactcgggtgtctgtgtatcctcagctttccggcggg----------ttttcttttttttaattgtgaatttatagcttatgtggcttgtttaggttatttggtgaaaatagtctcttgagactttctgcattgta-g
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90560920 176 -  91010382 TCAGTCATGCCcttcccgtgggggctcctcactgctggtggcttaattcactcgggtgtctgtgtatcctcagctttccggcgggg---tt---ttt---ttttttttaattgtgaatttatagcttatgtggcttgtttaggttatttggtgaaaatagtctcttgagactttctgcattgta-g
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      155034 171 -    438239 TCAGTCACACCCTTCCCCTGggggctcctcactgctggtggcttaattcactcgggtgtctgtgtatcctcagctttccggcggg-----------t---ttttttttaattgcgaatttatagcttatgtggcttgtttaggttatttggtgaaaatagtctcttgagactttctgcattgta-g
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185085 179 -    514179 TCAGGCACGCCCTTCCCCTGGGGGCTCCTCACTGCTGGTGGCTTAATTCACTCGGGTGTCTGTGTACCCTCAGCTTTCCGGCGGGGttttt---ttt---tttttttttattGTAAATGTATAGCTTACGTGGCTTGTTTAGGTTATTTGGTGAAAATAATCTCTTGAGACTTTTTGCATTGTA-G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203839840 171 + 204313951 CCAGCCACACCCTTCC--TGGGGGCTCCTCACTTCTGGGAGCTTCATTCACTCAGGTGTCCGTGTACCCTGCCATTTCTGGAGTT-----C---TTT---TTTTTTTTAATTATGAATTTATGGCTTATGTGACTTGTTTAAGTTGTTTGGTGAAAATCGTCTCTTGAGACTTCCCACATTGTA--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16001756 154 +  16417988 TCAGCCACACCCTTCCCTTCGAGGCTCCTCACTTCTGGTGGCTTCTTTCACTCAGGTGTCCGTGCATCCTCTGTTTTCTGGCATT-----C-----T---TTTTTTTTAATGTTGAATTTATGGCTTATGTGACTTGTTTAAGTTGT-----------------TTGAGACTCTCTACGTTGTA--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       84512 176 +    298490 TCAGCCACACCCTTCCC-TCGGGGCTCCCCACTTCTGGTGGCTTCGTTCACTCGGGTGCCCGTGTATCCTCCGCTTTCTGGCGtt-----ttttttt---ttttttttAATTGTGAATTTATGGCTTATGTGACTTGTTTAAGTTGTTTGGTGAAAATAGTCTCTTGAGACTTTCTACGTTGTAG-
i cebCap1.NW_016108158v1   I 165 I 365
s aotNan1.NW_018503740v1    25413044 162 -  25620257 TCGGCCACAGCCTTCCCTTGGGGGCTCCTCACTTCTGGTGGCTTCATCCACTCAGGTGTCCCTGTATCCTCCGCTTTCTGGCGTT-----C---TTT---TTTTTTGTAGTTGTGAATTTATGGCTTATGTGACTTGTTTA---------GTGAAAATAGTCTCTTGAGACTTTCTACATTG----
i aotNan1.NW_018503740v1   I 84 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I

a score=270509.000000
s hg38.chr5_KI270793v1_alt     54475 40 +    126136 CTGGAAGCAGAAGTTGTGTGTA-TTTTTT-AATATAAACTTT
s panTro5.chr5             181321867 40 - 181907262 ctggaagcagaaGTTGTGTGTA-TTTTTT-AATATAAACTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183042648 40 - 183735486 CTGGAAGCAGAAGTTGTGTGTA-TTTTTT-AATATAAACTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      129638 40 +    698298 CTGGAAGCAGAAGTTGTGTGTA-TTTTTT-AATATAAACTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120556975 39 - 121039945 CTGGAAGCAGAAGTTGTGTGTATTTTTTT-AATATAAACT--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179512253 41 - 180051392 CTGGAAGCAGAAGTTGTGTGTA-TTTTTTAAATACAAACTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181245971 41 - 181584905 ctggaagcagaaGTTGTGTGTA-TTTTTTAAATACAAACTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      247914 41 -   1764207 CTGGAAGCAGAAGTTGTGTGTA-TTTTTTAAATACAAACTTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      257839 41 -  16742782 ctggaagcagaaGTTGTGTGTA-TTTTTTAAATACAAACTTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90561096 41 -  91010382 ctggaagcagaaGTTGTGTGTA-TTTTTTAAATATAAACTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      155205 41 -    438239 ctggaagcacaaGTTGTGTGTA-TTTTTTAAATACAAACTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185264 41 -    514179 CTGGAAGCAGAAGTTGTGTGTA-TTTTTTAAATATAAACTTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203840011 36 + 204313951 ---GAAGTGGAAGTTGTGTGCC-TTTTTT-AATAAAAAACA-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16001910 36 +  16417988 ---GAAGTGGAAGTTGTGTGCA-TTTTTT-GATAAAAAACA-
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25413206 38 -  25620257 -TGGAAGTGGAAGTTGTGTGCA-TTTTCT-AATAAAAAACA-
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       84688 365 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I

a score=689731.000000
s hg38.chr5_KI270793v1_alt     54515 68 +    126136 TAATTTATTTAAGTAATGTATTATTTGAATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACGGGA
s panTro5.chr5             181321907 68 - 181907262 TAATTTATTTAAGTAATGTATTATTTGAATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACGGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183042688 68 - 183735486 TAATTTATTTAAGTAATGTATTATTTGAATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACGGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      129678 68 +    698298 TAATTTATTGAAGTAATGTATTATTTGAATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACGGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120557014 65 - 121039945 ---TTTATTTAAGTAACGTATTATTTAAATTTTTTCTTTTACAGACAGGTGTCAAGAGTAGCACAGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179512294 68 - 180051392 TAATTTATTTAAGTAATGTATTATTTAAATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246012 68 - 181584905 TAATTTATTTAAGTAATGTATTATTTAAATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      247955 68 -   1764207 TAATTTATTTAAGTAATGTATTATTTAAATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      257880 68 -  16742782 TAATTTATTTAAGTAATGTATTATTTAAATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90561137 68 -  91010382 TAATTTATTTAAGTAATGTATTATTTACATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      155246 68 -    438239 TAATTTATTTAAGTAATGTATTATTTAAATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185305 68 -    514179 TAATTTATTTAAGTAATGTATTATTTAAATTTTTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203840047 68 + 204313951 TAATGTATTTAAGCAACGTATTAATTAAATTTGTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGGA
i calJac3.chr2             C 0 I 2
s saiBol1.JH378155          16001946 68 +  16417988 TAATTTATTTAAGCAACGTATTAATTAAATTTGTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGGA
i saiBol1.JH378155         C 0 I 2
s cebCap1.NW_016108158v1       85053 68 +    298490 TAATTTATTTAAGCAACGTATTAATTAAATTTGTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGGA
i cebCap1.NW_016108158v1   I 365 I 25
s aotNan1.NW_018503740v1    25413244 68 -  25620257 TAACTTATTTAAGCAACGTATGAATTAAATTTGTTCTTTTACAGAAAGGTGTCAAGAGTAGCACAGGA
i aotNan1.NW_018503740v1   C 0 I 2
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I

a score=202496.000000
s hg38.chr5_KI270793v1_alt     54583 24 +    126136 ATATCTCTCTGACCATCTAGGGGT
s panTro5.chr5             181321975 24 - 181907262 ATATCTCTCTGACCATCTGGGGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183042756 24 - 183735486 ATATCTCTCTGACCATCTGGGGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      129746 24 +    698298 ATATCTCTCTGACCATCTAGGGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120557079 24 - 121039945 ATGTCTCTCTGACCATCTGGGGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179512362 24 - 180051392 ATATCTCTCTGACCATCTGGGGGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246080 24 - 181584905 ATATCTCTCTGACCATCTGGGGGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      248023 24 -   1764207 ATATCTCTCTGACCATCTGGGGGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      257948 24 -  16742782 ATATCTCTCTGACCATCTGGGGGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90561205 24 -  91010382 ATATCTCTCTGACCATCTGGGGGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      155314 24 -    438239 ATATCTCTCTGACCATCTGGGGGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185373 24 -    514179 ATATCTCTCCGACCATCTGGGGGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203840117 24 + 204313951 GTTTCTCTCTGATCGTTCAGGGCT
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          16002016 24 +  16417988 ATTTCCCTCTGATCGTTTAGGGGT
i saiBol1.JH378155         I 2 C 0
s aotNan1.NW_018503740v1    25413314 24 -  25620257 ATTTCTCTCTGACCGTTTAGGGGT
i aotNan1.NW_018503740v1   I 2 I 4028
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       85121 25 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I

a score=247447.000000
s hg38.chr5_KI270793v1_alt     54607 46 +    126136 CTGTTGCTGACTCGGTGCCTCCTTGTCCTGCGTACTCCCAGGTCAG
s panTro5.chr5             181321999 46 - 181907262 CTGTTGCTGACTCGGTGCCTCCTTGTCCTGCGTACTCGCAGGTCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183042780 46 - 183735486 CTGTTGCTGACTCGGTGCCTCCTTGTCCTGCGTACTCGCAGGTCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      129770 46 +    698298 CTGTTGCTGACTCGGTGCCTCCTTGTCCTGCGTACTCCCAGGTCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120557103 46 - 121039945 CTGTTGCTGACTCGGTGCGTCCTTGTCCTGCGTACTGCCAGGTCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179512386 46 - 180051392 AGGTTGCTGACTGGGTGCCTCCTTGTCCTGCGTGCTCCCAGGTCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246104 46 - 181584905 AGGTTGCTGACTGGGTGCCTCCTTGTCCTGCGTGCTCCCAGGTCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      248047 46 -   1764207 AGGTTGCTGACTGGGTGCCTCCTTGTCCTGCGTGCTCCCAGGTCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      257972 46 -  16742782 AGGTTGCTGACTCGGTGCCTCCTTGTCCTGCGTACTCCCAGGTGAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90561229 46 -  91010382 AGGTTGCTGACTCGGTGCCTCCTTGTCCTGCGTACTCCCAGGTCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      155338 46 -    438239 AGGTTGCTGACTTGGTGCCTCCTTGTCCTGCGTACTCCCAGGTCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185397 45 -    514179 AGGCTGCTG-CTCGGTGCCTCCTTGTTCTGCGTACTCCCAGGTCAG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25413338 4028 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       85121 25 +    298490 I
e saiBol1.JH378155          16002040  0 +  16417988 C
e calJac3.chr2             203840141  0 + 204313951 C
e canFam3.chr34             11714317 2586 +  42124431 I

a score=1180950.000000
s hg38.chr5_KI270793v1_alt     54653 151 +    126136 GACATCGGCTTGACTGGTGGCCACCTGCTGACCTCAGAGCCCTCGGAGCGAATCCAGCTGTCCAATTGAAACCAAGCATGGTCCTCTGCGGCTTGGCCTCTTTTTCTCCCGAGATGGTTGCGGGGCACTTATTGGGTGAAGACCCTCATTC----
s panTro5.chr5             181322045 147 - 181907262 GACATCGGCTTGACTGGTGGCCACCTGCTGACCTGAGAGCCCTCGGAGCGAATCCAGCTGTCCAATCGAAACCAAGCATGGTCCTCTGCGGCTTGACCTCTTTTTCTCCTGAGATGGTTGCGGGGCACTTATTGGGTGAAGACCC----TC----
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183042826 147 - 183735486 GACATCGGCTTGACTGGTGGCCACCTGCTGACCTCAGAGCCCTCGGAGCGAATCCAGCTGTCCAATCGAAACCAAGCATGGTCCTCTGCGGCTTGGCCTCTTTTTCTCCCGAGATGGTTGCGGGGCACTTATTGGGTGAAGACCC----TC----
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      129816 147 +    698298 GACATCAGCTTGACTGGTGGCCACCTGCTGACTTCAGAGCCCTCAGAGCGAATCCAGCTGTCCAATCGAAACCAAGCATGGTCCTCTGCGGCTTGGCCTCTTTTTCTCCCGAGATCGTTGCGGGGCACTTATTGGGTGAAGACCC----TC----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120557149 147 - 121039945 GACATCGGCGTGACTGGCGGTCACCTGCTGACCTCAGAGCCCTCGGAGCGAATCCAGCTGTCCCATCGAAACCAAGCATGGTCCTCTGCGGCTTGGCCCCTTTTTCTCCCAAGATGCTTGCGGGGCACTTATTGGGTGAAGACCC----TC----
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179512432 147 - 180051392 GACATCGGTGTGACTGGCAGCCGCCTGCTGACCTCAGAGCCCTCGGAGCGAATCCAGTTGTCCCATCGAAACCAAGCATGGTCTTCTGTGGTCTGGCCTCTTCATCTCCCGAGATGGTTGCAGGGCACTTATTGGGTGAAGACCC----TC----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246150 147 - 181584905 GACATCGGTGTGACTGGCAGCCGCCTGCTGACCTCAGAGCCCTCGGAGCGAATCCAGTTGTCCCATCGAAACCAAGCATGGTCTTCTGCGGTCTGGCCTCTTCATCTCCCGAGATGGTtgcagggcacttattgggtgaagaccc----tc----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      248093 147 -   1764207 GACATCGGTGTGACTGGCAGCCGCCTGCTGACCTCAGAGCCCTCGGAGCGAATCCAGTTGTCCCATCGAAACCAAGCATGGTCTTCTGCGGTCTGGCCTCTTCATCTCCCGAGATGGTtgcagggcacttattgggtgaagaccc----tc----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      258018 147 -  16742782 GACATCGGTGTGACTGGCAGCCACCTGCTGACCTCAGAGCCCTCGGAGCGAATCCAGTTGTCCCATCGAAACCAAGCATGGTCTTCTGCGGCCTGGCCTCTTTGTCTCCCGAGATGGTTGCAGGGCACTTATTGGGTGAAGACCC----TC----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90561275 147 -  91010382 GACATCGGTGTGACTGGCAGCCACCTGCTGACCTCAGAGCCCTCAGAGCGAATCCAGTTGTCCCATCGAAACCAAGCATGGTCTTCTGCAGCCTGGTCTCTTCGTCTCCCGAGATGGTTGTGGGGCACTTATTGGGTGAAGACCC----TC----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      155384 147 -    438239 GACATCGGTGTGACTGGCAGCCACCTGCTGACCTCAGAGCCCTCGGAGCGAATCCAGTTGTCCCATCGAAACCAAGCATGGTCTTCTGCGGCCTGGCCTCTTTGTCTCCCGAGATGGTtgcagggcacttattgggtgaagaccc----tc----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185442 147 -    514179 GACATCGGTGTGACTGGCAGCCGCCTGCTGACCTCAGAGCCCTCGGAGCGAATCCGGTTGTCCCATCGAAACCAAGCATGGTCTTCTGCGGCCTGGCCTCTTCGTCTCCCAAGATGGTTGCAGGGCACTTATTGGGTGAAGACCC----TC----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203840141 150 + 204313951 GACATCGGCTTGACTGGCGGCTGCCTGCAGACCTCAGGGTCCCCAGAGCAAATCCAGTT-TCTGATGGAAACCAAGCACTGCCCTCTGTAGCCTGGCCTCTTTGTCACCCAAGATGGTGGCAGGGCACTTGTTGGCTGAAGACCC----TCATTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16002040 150 +  16417988 GACATTGGCTTGACTGGCAGCTGCCCGCAGACCTCAGAGTCCCCAGAGCAAACCCAGCT-TCTGATCGAAACGAAGCCCTGCCCTCTGCAGCCTGGCGTCTTTGTCGCCCAAGATGGTGGCAGGGCACCCGCTGGGGGAAGACCC----TCATTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       85146 150 +    298490 GACATTGGCTTGACTGGCGGCTGCCCGCAGAGCTCAGAGTCCCCAGAGCGAATCCAGTT-CCTGATCGGAACCAAGCACTGCCCTCTGTAGCCTGGCCTCTTTGTCGCCCAAGATGGTGGCAGGGCACTTGCTGGGTGAAGACCC----TCATTC
i cebCap1.NW_016108158v1   I 25 I 348
e aotNan1.NW_018503740v1    25413338 4028 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I

a score=1607564.000000
s hg38.chr5_KI270793v1_alt     54804 263 +    126136 ATTCTGGGGTGTGTCAGGAGTTTCTTCGAGACAGGACCAAGCTATGAGCCTGTGGCAGGAGCATCC-GAGGCACAGCTCAGCCTCTCCCGTGCTG--C----------------------------------------------ACACCCCTG---------------TGTGCAGGTGCCCT--------------------TGC--------------CCGCAGCCGCGGCTCCAGGTCCGCGTGGAGTCAGCTGCTGCTGTCAAGCATTTTCACAGTACAGTTACTGGTCTACTCCAGCACAGTCACGAGGCACCTTGAGAGGCTGCAAAAGACCC-CTAAAGTCTTCCGCATCTTTATC-
s panTro5.chr5             181322192 263 - 181907262 ATTCTGGGGTATGTCAGGAGTTTCTTCGAGACAGGACCAAGCTATGAGCCTGTGGCAGGAGCATCC-GAGGCACAGCTCAGCCTCTCCCGTGCTG--C----------------------------------------------ACACCCCCG---------------TGTGCAGGTGCCCT--------------------TGC--------------CCGCAGCCGCGGCTCCAGGTCCGCGTGGAGTCAGCTGCTGCTGTCAAGCATTTTCACAGTACAGTTACTGGTCTACTCCAGCACAGTCACGAGGCACCTTGAGAGGCTGCAAAAGACCC-CTAAAGTCTTCCGCATCTTTATC-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183042973 263 - 183735486 ATTCTGGGGTATGTCAGGAGTTTCTTCGAGACAGGACCAAGCTATGAGCCTGTGGCAGGAGCATCC-GAGGCACAGCTCAGCCTCTCCCGTGCTG--C----------------------------------------------AAACCCCCG---------------TGTGCAGGTGCCCT--------------------TGC--------------CCGCAGCCGCGGCTCCAGGTCCGCGTGGAGTTAGCTGCTGCTGTCAAGCATTTTCACAGTACAGTTACTGGTCTACTCCAGCACAGTCACGAGGCACCTTGAGAGGCTGCAAAAGACCC-CTAAAGTCTTCCGCATCTTTATC-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      129963 265 +    698298 ATTCTGGGGTGTGTCAGGAGTTTCTTCGAGACAGGACCAAGCTATGAGCCTGTGGCAGGAGCATCC-GAGGCACAGCTCAGCCTCTCCCGTGCTGCAC----------------------------------------------ACACCCCCG---------------TGTGCAGGTGCCCT--------------------TGC--------------CCGCAGCCGCAGCTCCACGTCCGCGTGGAGTCAGCTGCTGCTGTCAAGCATTTTCACAGTACAGTTACTGGTCTACTCCAGCACAGTCACGAGGCACCTTGAGAGGCTGCAAAAGACCC-CTAAAGTCTTCTGCATCTTTATC-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120557296 263 - 121039945 ATTCTGGGGTGTGTCAGGCGTTTCCTCGAGACAGGACCAAGCTATGAGCCTGTGGCAGGAGCACCC-GAGGCACGGCTCAGCCTCTCCCGTGCTG--C----------------------------------------------ACACCTCTG---------------TGCGCAGGTGCCCT--------------------TGC--------------TCGCAGCCGCAGCTCCACATCCACGTGGAGTCAGCTGCTGCTGTCAAGCATTTTCGCAGTACAGTTACTGGTCTACTCCAGCACAGTCATGAGGCACCTTGAGAGGCTGCAAAAGACCC-CTAAAGTCTCCCACATCTTTATC-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179512579 262 - 180051392 ATTCT-GGGTGTGTCAGGCATTTTCTCGAGTCGGGATCAGGCTATGAGCCTGTGGCAGGAGCACCC-GAGGCACAGCTGAGCCTCTCCCACGCTG--C----------------------------------------------GCACCCCTG---------------AGCGCGGGTGCCCT--------------------TGC--------------CCGTAGCTGCAGCTCCAGATCCGCGTAGAGTCAGCTGTTGCTGTCAAGCATTTTCACAGAACAGTTACCGGTCTACTCCGGCACAGTCACGAGGCACCTTGAGATGCTGCAAAGGACCC-CTAAAGTCTTCCACATCTTTATC-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246297 262 - 181584905 attct-gggtgtgtcaggcattttctcgagtcgggatcaggctatgagcctgtggcaggagcaccC-GAGGCACAGCTGAGCCTCTCCCACGCTG--C----------------------------------------------GCACCCCTG---------------TGCGCAGGTGCCCT--------------------TGC--------------CCGTAGCTGCAGCTCCAGATCTGCGTAGAGTCAGCTGTTGCTGTCAAGCATTTTCACAGAACAGTTACCGGTCTACTCCGGCACAGTCACGAGGCACCTTGAGATGCTGCAAAGGACCC-CTAAAGTCTTCCACATCTTTATC-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      248240 262 -   1764207 attct-gggtgtgtcaggcattttctcgagtcgggatcaggctatgagcctgtggcaggagcaccC-GAGGCACAGCTGAGCCTCTCCCACGCTG--C----------------------------------------------GCACCCCTG---------------TGCGCAGGTGCCCT--------------------TGC--------------CCGTAGCTGCAGCTCCAGATCCGCGTAGAGTCAGCTGTTGCTGTCAAGCATTTTCACAGAACAGTTACCGATCTACTCCGGCACAGTCACGAGGCACCTTGAGATGCTGCAAAGGACCC-CTAAAGTCTTCCACATCTTTATC-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      258165 262 -  16742782 ATTCT-GGGTGTGTCAGGCATTTCCTCGAGTCGGGATCAGGCTATGAGCCTGTGGCAGGAGCACCC-GAGGCACAGCTGAGCCTCTCCCACGCTG--C----------------------------------------------GCACCCCTG---------------TGCACAGGTGCCCT--------------------TGC--------------CCGCAGCTGCAGCTCCAGATCCGCGTAGGGTCAGCTGTTGCTGTCAAGCATTTTCACAGAACAGTTACTGGTCTACTCCGGCACAGTCACGAGGCACCTTGAGATGCTGCAAAGGACCC-CTAAAGTCTTCCACATCTTTATC-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90561422 276 -  91010382 ATTCT-GGGTGTGTCAGGCATTTTCTCGAGTCGGGATCAGGCTATGAGCCTGTGGTAGGAGCACCC-GAGGCACAGCTGAGCCTCTCCCACGCTG--C----------------------------------------------GCACCCCTG---------------TGCACAGGTGCCCT--------------------TGCTATTTGTATTTGTATTTTATTTGCAGCTCCAGGTCCGCTTGGAGTCAGCCGCTGCTGTCAAGCATTTTCACAGAACAGTTACTGGTCTACTCCGGCACAGTCACGAGGCACCTTGAGATGCTGCAAAGGACCC-CTAAAGTCTTCCACATCTTTGTC-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      155531 262 -    438239 attct-gggtgtgtcaggcatttcctcgagtcgggatcaggctatgagcctgtggcaggagcaccC-GAGGCACAGCTGAGCCTCTCCCACGCTG--C----------------------------------------------GCACCCCTG---------------TGCGCAGGTGCCCT--------------------TGC--------------CCGCAGCTGCAGCTCCAGATCCGCGTAGAGTCAGCTGTTGCTGTCAAGCATTTTCACAGAACAGTTACTGGTCTACTCCGGCACAGTCACGAGGCACCTGGAGATGCTGCAAAGGACCC-CTAAAGTCTTCCACATCTTTATC-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185589 233 -    514179 ATTCT-GGGTGTGTCAGGCATTTCCCCGAGGCGGGATCAGGCTATGAGCCTGTGGCAGGTGCACCC-GAGGCACAGCCGAGCGTCTCCCACGCTG--C----------------------------------------------ACACCCCTG---------------TG---------------------------------------------------------------CCAGGTCCACATGGAGTCAGCTGCTGCTGTCAAGCATTTTCACAGAACAGTTACTGGTCTACTCCGGCACAGTCACGAGGCACCTTGAGATGCTGCAAAGGACCC-CTAAAGTCTTCCACATCTTTATC-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203840291 336 + 204313951 ----T-GGGTGCGTTGGGTGTTTCCTTGAGACAAAATCAGGCTATAAGCCTGTGGTGGGAGCCCCCTGAGGCCCCGCCAAGCCCCTCCTGTGCCG--CAcccaccccgcaccccctcactgcacaagtcccctcccacgccacaacaccccccccgcacccctccactcgcgccacacccccccacctcGGGTAGGTGCCCTTGC--------------TCGCACATGAGGCTCCGGG-CCGTGTGGAG---GCCGCCGCTGTCGGGCGTC--TATGGTACAGCGACTGGTCTACTCCAGTACAGTTACCAGGCCCCCTGAGACGATGCAAAGGACCCGCTCAGGTCTTCCGCGTGTGTATTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16002190 275 +  16417988 ----T-GGGTGCGTTGGGTGTTTCCTCGAGACAGAATCAGGCTATAAGCCAGTGGTGGGAGCCCCCTGAGGCCCCTCCAAGCCCTTCCCATGCCA--C----------------------------------------------ACACCCCGGCCGCACCCCCCAACCCGCACGGGTCCCCACCG-----------------TGC--------------CCACACAGGAGGCTTGGGG-CCGTGTGGAG---GCTGCTGCTGTCAGGCGTCTTTGTGGTACAGCGACGGGTCTGCCCCAGTACAGTCACCAGGCCCCCTGAGACGACGCAAAGGACCCGCTAACGTCTTCCGCATGTGTGTTT
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25413338 4028 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       85296 348 +    298490 I
e canFam3.chr34             11714317 2586 +  42124431 I

a score=500925.000000
s hg38.chr5_KI270793v1_alt     55067 64 +    126136 ATGTAAGGATGGGCTTGTGGGTTCCAGCTTTATTCCAGGGTCTATGATTTGGGACTGTCATTGA------
s panTro5.chr5             181322455 64 - 181907262 ATGTAAGGATGGGCTTGTGGGTTCCAGCTTTATTCCAGGGTCTATGATTTGGGACTGTCATTGA------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183043236 64 - 183735486 ATGTAAGGATGGGCTTGTGGGTTCCAGCTTTATTCCAGGGTCTATGGTTTGGGACTGTCATTGA------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      130228 64 +    698298 ATGTAAGGATGGGCTTGTGGGTCCCAGCTTTATTCCAGGGTCTATGATTTGGGACTGTCATTGA------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120557559 64 - 121039945 ATGTAAGGATGGGCTCGTGGGTTCCATTTTTATTCCAGGGGCTATGATTTGGGACTGTCATTGA------
i nomLeu3.chr6             C 0 M 485
s rheMac8.chr6             179512841 64 - 180051392 ATGTAAGGATGGGCTCGTGGGTTCCAGCTTTATTCCAGGGGCCATGATTTGGGACTGTCACTGA------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246559 64 - 181584905 ATGTAAGGATGGGCTCGTGGGTTCCAGCTTTATTCCAGGGGCCATGATTTGGGACTGTCACTGA------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      248502 64 -   1764207 ATGTAAGGATGGGCTCGTGGGTTCCAGCTTTATTCCAGGGGCCATGATTTGGGACTGTCACTGA------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      258427 64 -  16742782 ATGTAAGGATGGGCTCGTGGGTTCCAGCTTTATTCCAGGGGCCATGATTTGGGACTGTCACTGA------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90561698 64 -  91010382 ATGTAAGGATGGGCTTGTGGGTTCCAGCTTTATTCCAGGGGCTATGATTTGGGACTGTCACTGA------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      155793 64 -    438239 ATGTAAGGATGGGCTCGTGGGTTCCAGCTTTATTCCAGGGGCCATGATTTGGGACTGTCACTGA------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185822 64 -    514179 ATGTAAGGATGGGCACGTGGGTTCCAGCTTTATTCCAGGGGCCATGATTTGGGACTGTTGTTGA------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203840627 70 + 204313951 ATGTCAGGATGGGCTCCTGGGGTCCGGTTTTATGCCAGGGGTTAAGATTTGGGACTCTGGTTTGTATTCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16002465 68 +  16417988 ATGTCAGGATGGGCTC--GTGGTCCAGTTTTATGCCAGGGGCTAAGATTTGGAACTGTCATTTATATTGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       85644 70 +    298490 ATGTCAGGATGGGCTCGTGGGGTCCGGTTTTATGCCAGGGGCTAAGATTTGGGACTGTGGTTTATATTGA
i cebCap1.NW_016108158v1   I 348 C 0
e aotNan1.NW_018503740v1    25413338 4028 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I

a score=1800594.000000
s hg38.chr5_KI270793v1_alt     55131 269 +    126136 CACCCATATGTttgtcttttgcagtcctcaagggatgggttccaggacccccgagtttaacccacctgcaggagctcaagttcctgatgtaaaatgatgtcggatttgcaagtaacctgcacacatcct-cccggtactttaaatcatccctggattattcattgtaccgaatacaatggaaatgctatgtaaatagttgttacactgtgttgttattttt-atttgtatttttt--ctatattgttattttttattcttttccaagtatctt
s panTro5.chr5             181322519 269 - 181907262 CACCCATTGGCttgtcttttgcagtcctcaagggatgggttccaggacccccgagtttaacccacctgcaggagctcaagttcctgacgtaaaatgatgtcgaatttgcaagtaacctgcacacatcct-cccggtactttaaatcatccctggattattcattgtatcgaatacaatggaaatgctatgtaaatagttgttacactgtgttgttattttt-atttgtatttttt--ctatattgttattttttattcttttccaagtatctt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183043300 269 - 183735486 CACCCATATGCttgtcttttgcagtcctcaagggatgggttccaggacccctgagtttaacccacctgcaagagctcaagttcctgatgtaaaatgatgttgaatttgcaagtaacctgcacacatcct-cccggtactttaaatcatccctggattattcattgtatcgaatacaatggaaatgctatgtaaatagttgttacactgtgttgttattttt-atttgtatttttt--ctatattgttattttttattcttttccaagtatctt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      130292 269 +    698298 CACCCATATGCttgtcttttgcagtcctcaagggatgggttccaggacccccgagtttaaccaacctgcaggagctcaagttcctgatgtaaaatgatgtcggatttgcaagtaacctgcacacatcct-cccggtactttaaatcatccctggattattcattgtaccgaatacaatggaaatgctatgtaaatagttgttacactgtgttgttattttt-atttgtatttttt--ctatattgttattttttattcttttccaagtatctt
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179512905 271 - 180051392 CACCTATATGCttatctcttgcagtcctcaagggatgggttccaggaccccagaggttaacccacctgcaggacctccagttcctgatgtaaaatggtgtcatatttgcaagtaacctgcatacatcct-cccagtactttaaatcgtccctggattattcattgtaccaaatacaatggaaatgctatgtaaatagttgttgcactgtgttgttattttt-atttgtatttttttcctgtattgttattttttattcttTTCCAAGTATCTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246623 271 - 181584905 CACCTATATGCttatctcttgcagtcctcaagggatgggttccaggaccccagaggttaacccacctgcaggacctccagttcctgatgtaaaatggtgtcggatttgcaagtaacctgcatacatcct-cccagtactttaaatcgtccctggattattcattgtaccaaatacaatggaaatgctatgtaaatagttgttgcactgtgttgttattttt-atttgtatttttttcctgtattgttattttttattcttttccaagtatctt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      248566 271 -   1764207 CACCTATATGCttatctcttgcagtcctcaagggatgggttccaggaccccagaggttaacccacctgcaggacctccagttcctgatgtaaaatggtgtcggatttgcaagtaacctgcatacatcct-cccagtactttacatcgtccctggattattcattgtaccaaatacaatggaaatgctatgtaaatagttgttgcactgtgttgttattttt-atttgtatttttttcctgtattgttattttttattcttTTCCAAGTATCTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      258491 271 -  16742782 CACCTATATGCttatctcttgcagtcctcaagggatgggttccaggaccccagaggttaacccacctgcaggagctccagttcctgatgtaaaatggtgtcggatttgcaagtaacctgcatacatcct-cccagtactttaaatcgtccctggattattcattgtaccaaatacaatggaaatgctatgtaaatagttgttgcactgtgttgttattttt-atttgtatttttttcctgtattgttattttttattcttTTCCAAGTATCTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90561762 271 -  91010382 CACCTATATGCttatctcttgcagtcctcaagggatgggttccaggaccccagaggttaacccacctgcaggagctccagttcctgatgtaaaatggtgtcagatttgcaagtaacctgcatacatcct-cccagtacttgaaatcgtccctggattattcattgtaccaaatacaatggaaatgttatgtaaatagttgttacactgtgttgttattttt-atttgtatttttttcctgtattgttattttttattcttttccaagtatctt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      155857 271 -    438239 CACCTATATGCttatctcttgcagtcctcaagggatgggttccaggaccccagaggttaacccacctgcaggagctccagttcctgatgtaaaatggtgtcggatttgcaagtaacctgcatacatcct-cccagtactttaaatcgtccctggattattcattgtaccaaatacaatggaaatgctatgtaaatagttgttgcactgtgttgttattttt-atttgtatttttttcctgtattgttattttttattcttTTCCAAGTATCTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      185886 271 -    514179 CACCTATATGCttatctcttgcagtcctcaagggatgggttccaggaccccagaggttaacccacctgcagaagctccagttcctgatgtaaaatggtgtcggatttgcaagtaacctgcctacatcct-cccagtacttgaaatcgtccctggattattcattgtaccaaatacaatggaaatgctatgtaaatagttgttacactgtgttgttattttt-atttgtatttttttcctgtattgttattttttattcttttccaagtatctt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203840697 264 + 204313951 CATCTAGACGCttgtctcttggactcttcaagggatgggtcccaggaccccaaggttaaccccatctacagaggatcaggtccccgatttgaaacggtgttggcctgacaggttacctgcacacatcctccccagtgcctggaatcgtccct-gatcactcaccctaccgagtacgatggaa--gctgtgcaaac--atgttacacggtgtGGATATTTTTCATGTCTA-TTTTG--ATGTATTGTTATGTTTTGTTCATTCCCAGG-ACTCT
i calJac3.chr2             C 0 M 1905
s saiBol1.JH378155          16002533 268 +  16417988 CGTCTGGACGCttgtctctcggactcttcaagggatgggtcccaggaccccgaggttaaccccatctgcagagaatcaggtccctgatgtaaagcggcgttgggctgacaggtcacctgcacacaccct-cccggcgcctcgaatcatccct-gatcattcgtcctaccgaacgcggtggaagtgcggtgtaaatagatgttatactgtgtggttATTTTT-ATTTGTATTTTTG--ACGTATCGTTATGTTTTGTTCTTTTCCAGGTACTCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       85714 267 +    298490 CATCTAGACGCttgtctcttggagtcttcaagggatgggtcccagga-cccgaggttaaccccatctgcagagaatcaggtccctgatgtaaagcggcgttggactgacaggtcacctgcacacaccct-tcccgcacctcgaatcatccct-gatcattcagcctaccgaacacgatggaagtgctgtgtaaatagttgttatactgtgtggttATTTTT-ATTTGTATTTTTG--ACGTATTGTTATCTTTTGTTCTTTTCCAGGTACTCT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25413338 4028 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e canFam3.chr34             11714317 2586 +  42124431 I
e nomLeu3.chr6             120557623 485 - 121039945 M

a score=52249.000000
s hg38.chr5_KI270793v1_alt     55400 9 +    126136 tgatcctcg
s panTro5.chr5             181322788 9 - 181907262 tgatcctcg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183043569 9 - 183735486 tgatcctcg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      130561 9 +    698298 tggtcctcg
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179513176 9 - 180051392 TGATCTTTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246894 9 - 181584905 tgatccttg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      248837 9 -   1764207 TGATCCTTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      258762 9 -  16742782 TGATCCTTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562033 9 -  91010382 tgatccttg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156128 9 -    438239 TGATCCTTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186157 9 -    514179 tgatccttg
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16002801 9 +  16417988 TGGCCCTCG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       85981 9 +    298490 TGGCCCTCA
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25413338 4028 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11714317 2586 +  42124431 I
e nomLeu3.chr6             120557623 485 - 121039945 M

a score=125791.000000
s hg38.chr5_KI270793v1_alt     55409 19 +    126136 gttgaatctgtggtgcgga
s panTro5.chr5             181322797 19 - 181907262 gttgaatctgtggtgcgga
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183043578 19 - 183735486 gttgaatctgtggtgcgga
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      130570 19 +    698298 gttgaatctgtggtgcgga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558109 19 - 121039945 GTTGAATCTGCGACGTGGA
i nomLeu3.chr6             M 485 C 0
s rheMac8.chr6             179513185 19 - 180051392 GTTGAGTCTGCGATGTGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246903 19 - 181584905 gttgagtctgcgatgtgga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      248846 19 -   1764207 GTTGAGTCTGCGATGTGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      258771 19 -  16742782 GTTGAGTCTGCGATGTGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562042 19 -  91010382 gttgagtctgcgatatgga
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156137 19 -    438239 GTTGAGTCTGCGATGTGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186166 19 -    514179 gttgaatctgcgatgtgga
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16002810 19 +  16417988 GTGGAATCTCTGACGTGGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       85990 19 +    298490 ATTGAGTCTTTGACGTGGG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25413338 4028 -  25620257 I
e otoGar3.GL873745           1860790 3778 -   2165740 I
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11714317 2586 +  42124431 I

a score=295962.000000
s hg38.chr5_KI270793v1_alt     55428 42 +    126136 acctgaagacgtggaggCAGGCCGTATTTATTTCTATACACT
s panTro5.chr5             181322816 42 - 181907262 acctggagatgtggaggCAGGCCGtatttatttctatacact
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183043597 42 - 183735486 acctggagacgtggaggCAGGCCGTATTTATTTCTATACACT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      130589 42 +    698298 accTGAAGATGTAGTGGCAGGCCGtatttatttctatacact
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558128 41 - 121039945 ACCTGGAGATGTGGAGGCAGGCTGTATTTATTTCTATACAC-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179513204 41 - 180051392 ACCTGGGGACGTGGA-GCAGGCTGTATTTATTTCTATACACA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246922 41 - 181584905 acctggggacgtgga-gCAGGCTGTATTTATTTCTATACACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      248865 41 -   1764207 ACCTGGGGACGTGGA-GCAGGCTGTATTTATTTCTATACACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      258790 41 -  16742782 ACCTGGGGACGTGGA-GCAGGCTGTATTTATTTCTATACACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562061 41 -  91010382 acctggggacgtgga-gCAGGCTGTATTTATTTCTATACACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156156 41 -    438239 ACCTGGGGACGTGGA-GCAGGCTGTATTTATTTCTATGCACA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186185 41 -    514179 acctggggacgtgga-gCAGGCTGTATTTATTTCTATACACA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16002829 40 +  16417988 ACCTGCAGAGGTGGAGGCAGGCTGTCTGTA--TCTATACACA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       86009 42 +    298490 ACCCGTAGACGTGGAGGCAGGCTGTCGGTATTtctatacaca
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25417366 42 -  25620257 ACCTGCAGACGGGCAGGCAGGCTGTCTGTATCTCTATACAAA
i aotNan1.NW_018503740v1   I 4028 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11714317 2586 +  42124431 I

a score=3764773.000000
s hg38.chr5_KI270793v1_alt     55470 463 +    126136 CCTATTCGTTttgcaaatcctaaattcacacagatgcctccaaaccgaatccaagtcagagtttgtgacagttttctcttttcaaaatctgaaactc--------tgacagtaaga---ccagctcccaaggcctctgacacatttgcatcgtggatcaatccC--CTTAGGTGACCATCC-CCTTAGGTGACCATCCCCTGCTGGAGATGCCCTTC--------------CCTTCTGGCCTGGGCTCGGCTCCCCTGCTGTGTGGACAGCC--CTTGCCGGCAAGGGCTCTGATTCCCCGCAAGGCCACACCAGGCCCCGGCCTCCTGCCCCAGGC----------TGGGGCTGACTATGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCGATGCTAAGGTAGGGGCTTTGCACCTGCAGTGGGCAAGGCCACCTGGGCACAGGTGTGCGGGAGGAAGAGCCTCTCAGGAGCCAGTGGAGGT-GAGGCTCAGGAGCCA
s panTro5.chr5             181322858 463 - 181907262 cctattcatttcgcaaatcctaaattcacacagatgcctccaaaccgaatccaagtcagagtttgtgacagttttctcttttcaaaatctgaaactc--------tgacagtaaga---ccagctcccaaggcctctgacacatttgcatcttggatcaatccC--CTTAGGTGACCATCC-CCTTAGGTGACCATCCCCGGCTGGAGATGCCCTTC--------------CCGTCTGGCCTGGGCTCGGCTCCCCTGCTGTGTGGACAGCC--CTTGCCGGCAAGGGCTCTGATTCCCTGCAAGGCCACACCAGGCCCCGGCCTCCTGCCCCAGGC----------TGGGGCTGACTATGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCGATGCTAAGGTAGGGGCTTTGCACCTGCAGTGGGCAAGGCCACCTGGGCACAGGTGTGCGGGAGGAAGAGCCTCTCAGGAGCCAGTGGAGGT-GAGGGTCAGGAGCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183043639 463 - 183735486 CCTATTCATTTCGCAAATCCTAAATTCACACAGATGCCTCCAAACCGAATCCAAGTCAGAGTTTGTGACAGTTTTCTGTTTTCAAAATCTGAAACTC--------TGACAGTAAGA---CCAGCTCCCAAGGCCTCTGACACATTTGCATCTTGGATCAATCCC--CTTAGGTGACCATCC-CCTTAGGTGACCATCCCCGGCTGGAGATGCCCTTC--------------CCGTCTGGCCTGGGCTCGGCTCCCCTGCTGTGTGGACAGCC--CTTGCCGGCAAGGGCTCTGATTCCCTGCAAGGCCACACCAGGCCCCGGCCTCCTGCCCCAGGC----------TGGGGCTGACTATGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCGATGCTAAGGTAGGGGCTTTGCACCTGCAGTGGGCAAGGCCACCTGGGCACAGGTGTGCGGGAGGAAGAGCCTCTCAGGAGCCAGTGGAGGT-GAGGGTCAGGAGCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      130631 447 +    698298 cctattcattttgcaaatcctaaactcacacagatgcctccaaaccgaatccaagtcagagtttgtgacagttttctcttttcaaaatctgaaactc--------tgacagtaaga---ccagctcccaaggcctctgacacatttgcatgttggatcaatccC--CTTAGGTGACCATCC-CCT----------------GCTGGAGACACCCTTC--------------CCGTCTGGCCTGGGCTCGGCTCCCCTGCTGTGTGGACAGCC--CTTGCCGGCAAGGGCTCTGATTCCCCGCAAGGCCACACCAGGCCCCGGCCTCCTGCCCCAGGC----------TGGGGCTGACTATGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCAATGCTAAGGTAGGGGCTTTGCACCTGCAGTGGGCAAGGCCACCTGGGCACAGGTGTGCGGGAGGAAGAGCCTCTCAGGAGCCAGTGGAGGT-GAGGCTCAGGAGCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558169 442 - 121039945 ACTATTCATTTTGCAAACCCTAAATTCACACAGATGCCTCCAAACCGAATCCAAGTCAGAGTTTGTGACAGTTTTCTCTTTTCAAAATATGAAACTC--------TGACAGTAAAA---CCAGCTCCCAAGGCCTCTGACACATTTGCATCTTGGATCAATCCC--CTTAGGTGACCATCC-CCTTAGGGGACCATCCCCAGCTGGAGACGCCCTAC--------------CCGTCTGACCTGGGCTCAGCTCCCCTGCTGTGTGGACAGCC--CTTGCTGGCAAGGCCTCTGATTTCCCGCAAGGCCACGTCAGGCCCTGGCCTCCTGCCCCAGGC----------TGGGGCTGACTACGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCGATGCTAAGGTAGGGGCTCTGCACCTGCAGTGGGCAAGACCACCTGGGCACAGGTGCACGGGAGGAAGAGCCTCTCAGGAGCCAGC----------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179513245 446 - 180051392 CCTACTCATTTTGCAAATTCTAGATTCACACAGATGCCTCCAAACCAAATCCAAGTCAGAGTTTGTGACAGTTTTCTCTTTTCAAACTCTAAAACTC--------TGACAATAAAA---CCAGCTCCCAAGGCCTCTGACACATTTGCATCTTGT-TCAATCCC--CTTAGGTGACCATCC-CCG----------------ACTGGAGACGCCCTTC--------------TCATCTGGCCTGAGCTCGGCTCCCTTGCTGTGTAGACAGCC--CTTGCCGACAAGGGCTCTGATTCCCCACGAGGCCACACCAGGCCCTGGCCTCCCGCCCCAGGC----------TGGGGCTGACTCTGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCGATGCTAAGGTAGGGGCTCGGCACCTGCAGTGGGCAAGGCCACCCGGGCACAGGTGCACAGGAGGAAGAACCTCTCGGGAGTCAGTGGAGGT-GAGGCCCAGGAGCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181246963 447 - 181584905 CCTACTCATTTTGCAAATTCTAGATTCACACAGATGCCTCCAAACCAAATCCAAGTCAGAGTTTGTGACAGTTTTCTCTTTTCAAACTCTGAAACTC--------TGACAATAAAA---CCAGCTCCCAAGGCCTCTGACACATTTGCATCTTGGATCAATCCC--CTTAGGTGACCATCC-CCG----------------ACTGGAGACGCCCTTC--------------TCATCTGGCCTGGGCTCGGCTCCCTTGCTGTGTAGACAGCC--CTTGCCGACAAGGGCTCTGATTCCCCACGAGGCCACACCAGGCCCTGGCCTCCTGCCCCAGGC----------TGGGGCTGACTCTGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCGATGCTAAGGTAGGGGCTCGGCACCTGCAGTGGGCAAGGCCACCCGGGCACAGGTGCACAGGAGGAAGAACCTCTCGGGAGTCAGTGGAGGT-GAGGCCCAGGAGCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      248906 447 -   1764207 CCTACTCATTTTGCAAATTCTAGATTCACACAGATGCCTCCAAACCAAATCCAAGTCAGAGTTTGTGACAGTTTTCTCTTTTCAAACTCTGAAACTC--------TGACAATAAAA---CCAGCTCCCAAGGCCTCTGACACATTTGCATCTTGGATCAATTCC--CTTAGGTGACCATCC-CCG----------------ACTGGAGACGCCCTTC--------------TCATCTGGCCTGGGCTCGGCTCCCTTGCTGTGTAGACAGCC--CTTGCCGACAAGGGCTCTGATTCCCCACGAGGCCACACCAGGCCCTGGCCTCCCGCCCCAGGC----------TGGGGCTGACTCTGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCGATGCTAAGGTAGGGGCTCGGCACCTGCAGTGGGCAAGGCCACCCGGGCACAGGTGCACAGGAGGAAGAACCTCTCGGGAGTCAGTGGAGGT-GAGGCCCAGGAGCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      258831 441 -  16742782 CCTACTCACTTTGCAAATTCTAGATTCACACAGATGCTTCCAAACCAAATCGAAGTCAGAGTTTGTGACAGTTTTCTCTTTTCAAACTCTGAAACTC--------TGACAATAAAA---CCAGCTCCCAAGGCCTCTGACACATTTGCATCTTGGATCAATCCC--CTTAGGTGACCA-----------------------GCTGGAGACGCCCTTC--------------TCATCTGGCCTGGGCTCGGCTCCCTTGCTGTGTAGACAGCC--CTTGACGACAAGGGCTCTGATTCCCCACAAGGCCACACCAGGCCCTGGCCTCCCGTCCCAGGC----------TGGGGCTGACTCTGTAGGACACCCCAGCCCCACCAGCCTTGGGGTCTCCGATGCTAAGGTAGGGGCTCGGCACCTGCAGTGGGCAAGGCCACCCGGGCACAGGTGCACAGGAGGAAGAACCTCTGGGGAGTCAGGGGAGGT-GAGGCCCAGGAGCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562102 447 -  91010382 CCTACTCATTCTGCAAATCCTAAATTCACTCAGATGCCTCCAAACCAAAACCAAGTCAGAGTTTGTGACAGTTTTCTCTTTTCAAACTCTGAAACTC--------TGACAATAAAA---CCAGCTCCCAAGGCCTCTGACACATTTGCATCTTGGATCAATCCC--CTTAGGTGACCATCC-CCG----------------GCTGGAGACGCCCTTC--------------TCATCTGGCCTGGGCTCGGCTCCCTTGCTGTGTAGACAGCC--CTTGCCGACAAGGGCTCTGATTCCCCACAAGGCCACACCAGGCCCTGGCCTCCTGCCCCAGGC----------TGGGGCTGACTCTGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCGATGCTAAGGTAGGGGCTCGGCACTTGCAGTGGGCAAGGCCACCTGGGCACAGGTGCACAGGAGGAAGAACCTCTCGGGAGTCAGTGGAGGT-GAGGCCCAGGAGCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156197 441 -    438239 CCTACTCACTTTGTAAATTCTAGATTCACACAGATGCTTCTAAACCAAATCCAAGTCAGAGTTTGTGACAGTTTTCTCTTTTCAAACTCTGAAACTC--------TGACAATAAAA---CCAGCTCCCAAGGCCTCTGACACATTTGTATCTTGGATCAGTCCC--CTTAGGTGACCA-----------------------GCTGGAGACGCCCTTC--------------TCATCTGGCCTGGGCTCGGCTCCCTTGCTGTGTAGACAGCC--CTTGACGACAAGGGCTCTGATTCCCCACAAGGCCACACCAGGCCCTGGCCTTCCGCCCCAGGC----------TGGGGCTGACTCTGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCGATGTTAAGGTAGGGGCTCGGCACCTGCAGTGGGCAAGGCCACCCGGGCACAGGTGCACAGGAGGAAGAACCTCTGGGGAGTCAGTGGAGGT-GAGGCCCAGGAGCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186226 447 -    514179 CCTACTCATTTTGCAAATCCTAAATTCACACAGATGCCTCCAAACCAAATCCAAGTCAGAGTTTGTGACAGTTTTCTCTTTTCAAACTCTGAAACTC--------TGACAATAAAA---CCAGCTCCCAAGGCCTCTGACACATCTGCATCTTGGATCAGTCCT--CTTAGGTGACCATCC-CCG----------------GCTGGAGACACCCTTC--------------TCATCTGGCCTGGGCTCAGCTCCCTTGCTGTGTAGACAGCC--CTTGCCGACAAGGGCTCTGATTCCCCACAAGGCCACACCAGGCCCTGGCCTCCCACCCCAGGC----------TTGGGCTGACTCTGCAGGACACCCCACCCCCACCAGCCTTGGGGTCTCCGATGCTAAGGTAGGGGCTCTGCACCTGCAGTGGGCAAGGCCACCTGGGCACAGGTGCGCGGGAGGAAGAACCTCTCAGGAGTCAGCGGAGGT-GAGGCCCAGGAGCCA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16002869 440 +  16417988 CCTCTTCATTTTGCAGATTCTAAATTCACACAGATGCCTCCAAACCCAATCCAAGTCAGAGATGATG--AGTTTTCCCTTTGCAGAATTTGAAACTC--------TGACGGTAAAG---CCAGCTCCCGAGGTCTCTGACACATTTGCTTCTGGGATCCACCCC--CTTA-GTGACCATCC-CGG----------------GCCACTGACACCCTTC--------------TCTTCTCGCCTAGGCTCAGCTT-CCCGCTGTGT-GGTGCCC--CTCGCCAGCCAGGGCTCTGATTCCCCGCAAGCCCACAGCAGACCCTGGCCCCCTGCCCCAGGC----------TGGGGCTGACTGTGTGGGACACCCCA-CCCCACCAGCCTTGGGGTCTCCGATGCT-AGGTAGGGGCTCTGCACCTGCAGTGACCAAGGCCACCTGGGTACAGGTGCGTGGGAGAAAGAGCCGCTCAGGAGCCAGCGGAGGT-GAGGCCCAGGAGCTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       86051 444 +    298490 cctattcattttgcaaatcctaaattcacacagatgcctccaaacccaatccaagtcagagctgatgacagttttctctttgcagaatttgaaactc--------tgatggtaaag---ccagctcccgaggtctctgacacatttgcttCTGGGATCCACCCC--CTTA-GTGACCATCC-CCG----------------GCCAGTGACACCCTTC--------------TCTTCTTGCCTAGGCTCAGCTTCCCCACTGTGTGGGTGGCC--CTCCCCGGCCAGGGCTCTGATTCCCCACAAGCTCACAGCAGACCCTGGCCCCCTGCCCCAGGA----------TGGGGCTGACTCTGTGGGACACCCCA-CCCCACCAGCCTTGGGGTCTCCGATGCT-AGGTAGGGGCTCTGCACCTGCAGTGGCCAAGGCCACGTGGGCACAGGTGCGTGGGAGGAAGAGCTGCTCAGGAGCCAGCGGAGGT-AAGGCCCAGGAGCTG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25417408 443 -  25620257 CCTATTCATTTTGCAAATTCT-AATTCACACAGATGCCTCCAAACCGAATCCAAGTCAGAGCTGATGACAGTTTTCTCTTTGCAGAATTTGAAACTC--------TGACGGTAAAG---CCAGCTCCCGAGGTCTCTGACACATTTGCTTCTGGGGTCCACCCC--CCTA-GTGACCATCC-CCG----------------GCTGGTGACACCCTTC--------------TCTTCTTGCCTAGGCTCAGCTTCCCCGCCGTGTGGGTGGCC--CTCGCCGACCAGGGCTCTGATGCCCCGCAAGCCCACAGCAGACCCTGTCCCCCTGCCCTAGGC----------TGGGGCTGACTGTGTGGGACACCCCA-CCCCACCAGCCTTGGGGTCTCTGATGCT-AGGTAGGGGCTCTGCACCTGCAGTGGCCAAGGCCACCTGGGCACAGGTGCGTGGGAGGAAGCGCCGCTCAGGAGCCAGCGGAAGT-GAGGCCCAGGAGCTG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11716903 419 +  42124431 CCtgtgtattttgaaaatgatccattcacacagatactatcagttccaatcctgacttgaatttg---cttttctctttttcccaaatgtataactccctttttttgacattaggaaactcagct--------------------tacatATTGGCTCCGTCCCCTCTTGGGTAACGGGCCTCCT----------------GTTACCGCCACCCCTCCCTCTCGCCCCTCTTCATCTTGCTTGGGCTCTGGCCGCCCA-TGTGGGGTCACCCTGCTTGGCTTCCAG----------CCCCACAGG------CCAGGCCTTCCCTCCCCACCATCAGCCGGCTGTGCTTGGGGCTGACCCCAGGGGGTGCCCCACCCTTGCAGTTCTGAGTGTCTTT----------------------ACCCGCAAGGGGCAAGGTCACCTGGGCACAGGTAAGTGGGAAGAAAGG-------GGACCCAGCAAAGACAGAGGCCCAGGGGCCA
i canFam3.chr34            I 2586 I 36
e otoGar3.GL873745           1860790 3778 -   2165740 I
e calJac3.chr2             203840961 1905 + 204313951 M

a score=613578.000000
s hg38.chr5_KI270793v1_alt     55933 75 +    126136 GAGGAGACGTGGGAACAGCAGGAGGGTCCGGGGCAAAGGACCCAGTGCTGCCTTGAAGCCAGAGGGGGCTTTGTG
s panTro5.chr5             181323321 75 - 181907262 GAGGAGACGTGGGAACAGCAGGAGGGCCCGGGGCAAAGGACCCAGTGCTGCCTTGAAGCCAGAGGGGGCTTTGTG
i panTro5.chr5             C 0 I 53
s panPan2.chr5             183044102 75 - 183735486 GAGGAGACGTGGGAACAGCAGGAGGGCCCGGGGCAAAGGACCCAGTGCTGCCTTGAAGCCAGAGGGGGCTTTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131078 75 +    698298 GAGGAGACGCGGGAACAGCAGGAGGGCCCGGGGCAAAGGACCCAGTGCTGCCTTGAAGCCAGAGGGGGCTTTGTG
i gorGor5.CYUI01015805v1   C 0 I 106
s nomLeu3.chr6             120558611 72 - 121039945 --GGAGACGTGGGAACAGCAGGA-GGCCCGGGGCAAAGGACCCAGTGCTGCCCTGAAGCCAGAGGGGGCTTTGCG
i nomLeu3.chr6             C 0 I 53
s rheMac8.chr6             179513691 75 - 180051392 GAGGAGACGTGGGGACAGCAGGAGGGCCCGGGACAAAGGACCCACTGCTGCCTTGAAGCCAGAGGGGGCTTTGCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181247410 75 - 181584905 GAGGAGACGTGGGGACAGCAGGAGGGCCCGGGACAAAGGACCCACTGCTGCCTTGAAGCCAGAGGGGGCTTTGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      249353 75 -   1764207 GAGGAGACGTGGGGACAGCAGGAGGGCCCGGGACAAAGGACCCACTGCTGCCTTGAAGCCAGAGGGGGCTTTGCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      259272 75 -  16742782 GAGGAGACGTGGGGACAGCAGGAGGGCCCGGGACAAAGGACCCACTGCTGCCTTGAAGCCAGAGAGGGCTTTGCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562549 75 -  91010382 GAGGAGACGTGGGGACAGCAGGAGGGCCCGGGACAGAAGACCCACTGCTGCCTTGAAGCCAGAGGGGGCTTTGCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156638 75 -    438239 GAGGAGACGTGGGGACAGCAGGAGGGCCCGGGACAAAGGACCCACTGCTGCCTTGAAGCCAGAGAGGGCTTTGCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186673 75 -    514179 GAGGAGACGTGGGGACGGGAGGAGGGCCTGGGGCAAAGGACGCACTGCTGCCTTGAAGCTAGAGGGGGCTTTGCG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16003309 60 +  16417988 GAGGAGACATGGGGACAGCAGGA---------------GGCCTGGGGCCACCCTGAAGCCTGAGGGGGCTTTGTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       86495 75 +    298490 GGGGAGACATGGGGACAGCGGGAGGGCCTGGGGCAAAGGGCCCGGGGCCGCCCTAAAGGCTGAGGGGGCTTTGCG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25417851 75 -  25620257 GAGGAGACATGGGGACAGCAGGAGGGCCTGGGGCAAAGGGCCCGGGGCCACCCTGAAGCCTGAGGGGGCTTTGCG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I

a score=128686.000000
s hg38.chr5_KI270793v1_alt     56008 15 +    126136 GAGCACACGCCTGGG
s panTro5.chr5             181323449 15 - 181907262 GAGCACACACCTGGG
i panTro5.chr5             I 53 C 0
s panPan2.chr5             183044177 15 - 183735486 GAGCACACACCTGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131259 15 +    698298 GAGCACACGCCTGGG
i gorGor5.CYUI01015805v1   I 106 C 0
s nomLeu3.chr6             120558736 15 - 121039945 GAGCACACGCCTGGG
i nomLeu3.chr6             I 53 C 0
s rheMac8.chr6             179513766 15 - 180051392 GAGCACACACCTGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181247485 15 - 181584905 GAGCACACACCTGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      249428 15 -   1764207 GAGCACACACCTGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      259347 15 -  16742782 GAGCACACACCTGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562624 14 -  91010382 GAGCACAC-TCTGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156713 15 -    438239 GAGCACACACCTGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186748 15 -    514179 GAGCACACACCTGGG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16003369 14 +  16417988 GAGCACACACCTGG-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       86570 15 +    298490 GAGCATACACCCGGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25417926 15 -  25620257 GAGCACACACCTGGG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I

a score=34762.000000
s hg38.chr5_KI270793v1_alt     56023 4 +    126136 TGCA
s panTro5.chr5             181323464 4 - 181907262 TGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044192 4 - 183735486 TGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131274 4 +    698298 TGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558751 4 - 121039945 TGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179513781 4 - 180051392 TGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181247500 4 - 181584905 TGCA
i macFas5.chr6             C 0 T 23
s macNem1.NW_012012389v1      249443 4 -   1764207 TGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      259362 4 -  16742782 TGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562638 4 -  91010382 TGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156728 4 -    438239 TGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186763 4 -    514179 TGCA
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       86585 4 +    298490 TGCA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25417941 4 -  25620257 TGCA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e saiBol1.JH378155          16003383 0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I

a score=21642.000000
s hg38.chr5_KI270793v1_alt     56027 12 +    126136 GACCCCACGGGG
s panTro5.chr5             181323468 12 - 181907262 GACCCCACGGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044196 12 - 183735486 GACCCCACGGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131278 12 +    698298 GACCCCACGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558755 12 - 121039945 GACCCCACGGGG
i nomLeu3.chr6             C 0 C 0
s cebCap1.NW_016108158v1       86589 12 +    298490 GACCCCACGGGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25417945 11 -  25620257 GACCCCACGGG-
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e saiBol1.JH378155          16003383  0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732  0 -    438239 C
e chlSab2.chr4              90562642  0 -  91010382 C
e cerAty1.NW_012009470v1      259366  0 -  16742782 C
e colAng1.NW_012118799v1      186767  0 -    514179 C
e macNem1.NW_012012389v1      249447  0 -   1764207 C
e macFas5.chr6             181247504 23 - 181584905 T
e rheMac8.chr6             179513785  0 - 180051392 C

a score=1500.000000
s hg38.chr5_KI270793v1_alt     56039 1 +    126136 G
s panTro5.chr5             181323480 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044208 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131290 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558767 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s aotNan1.NW_018503740v1    25417956 1 -  25620257 G
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601 0 +    298490 C
e saiBol1.JH378155          16003383 0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732 0 -    438239 C
e chlSab2.chr4              90562642 0 -  91010382 C
e cerAty1.NW_012009470v1      259366 0 -  16742782 C
e colAng1.NW_012118799v1      186767 0 -    514179 C
e macNem1.NW_012012389v1      249447 0 -   1764207 C
e macFas5.chr6             181247504 23 - 181584905 T
e rheMac8.chr6             179513785 0 - 180051392 C

a score=25140.000000
s hg38.chr5_KI270793v1_alt     56040 36 +    126136 CCGCACTGCTAATCTGCAGGTGAGCACACGCCTGGG
s panTro5.chr5             181323481 36 - 181907262 CCGCACTGCTGATCTGCAGGTGAGCACACGCCTGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044209 21 - 183735486 CCGCACTGCTGATCTGCAGGT---------------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131291 36 +    698298 CCGCACTGCTGATCTGCAGGTGAGCACACGCCTGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558768 36 - 121039945 CCGCACTGCTGATCTGCAGGTGAGCACACGCCTGGG
i nomLeu3.chr6             C 0 T 125
e aotNan1.NW_018503740v1    25417957  0 -  25620257 C
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601  0 +    298490 C
e saiBol1.JH378155          16003383  0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732  0 -    438239 C
e chlSab2.chr4              90562642  0 -  91010382 C
e cerAty1.NW_012009470v1      259366  0 -  16742782 C
e colAng1.NW_012118799v1      186767  0 -    514179 C
e macNem1.NW_012012389v1      249447  0 -   1764207 C
e macFas5.chr6             181247504 23 - 181584905 T
e rheMac8.chr6             179513785  0 - 180051392 C

a score=2910.000000
s hg38.chr5_KI270793v1_alt     56076 3 +    126136 TGC
s panTro5.chr5             181323517 3 - 181907262 TGC
i panTro5.chr5             C 0 T 124
s gorGor5.CYUI01015805v1      131327 3 +    698298 TGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558679 3 - 121039945 TGC
i nomLeu3.chr6             T 125 C 0
s macFas5.chr6             181247481 3 - 181584905 TGC
i macFas5.chr6             T 23 C 0
e aotNan1.NW_018503740v1    25417957 0 -  25620257 C
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601 0 +    298490 C
e saiBol1.JH378155          16003383 0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732 0 -    438239 C
e chlSab2.chr4              90562642 0 -  91010382 C
e cerAty1.NW_012009470v1      259366 0 -  16742782 C
e colAng1.NW_012118799v1      186767 0 -    514179 C
e macNem1.NW_012012389v1      249447 0 -   1764207 C
e rheMac8.chr6             179513785 0 - 180051392 C
e panPan2.chr5             183044230 0 - 183735486 C

a score=67.000000
s hg38.chr5_KI270793v1_alt     56079 1 +    126136 A
s gorGor5.CYUI01015805v1      131330 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558682 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181247484 1 - 181584905 G
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181323520 124 - 181907262 T
e aotNan1.NW_018503740v1    25417957 0 -  25620257 C
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601 0 +    298490 C
e saiBol1.JH378155          16003383 0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732 0 -    438239 C
e chlSab2.chr4              90562642 0 -  91010382 C
e cerAty1.NW_012009470v1      259366 0 -  16742782 C
e colAng1.NW_012118799v1      186767 0 -    514179 C
e macNem1.NW_012012389v1      249447 0 -   1764207 C
e rheMac8.chr6             179513785 0 - 180051392 C
e panPan2.chr5             183044230 0 - 183735486 C

a score=69769.000000
s hg38.chr5_KI270793v1_alt     56080 53 +    126136 GAGCACACGCCTGGGTGCAGACCCCACGGGGGCCGCACTGCTAATCTGCAGGT
s panTro5.chr5             181323396 53 - 181907262 GAGCACACACCTGGGTGCAGACCCCACGGGGGCCATACTGCTGATCTGCAGGT
i panTro5.chr5             T 124 T 53
s panPan2.chr5             183044230 53 - 183735486 GAGCACACGCCTGGGTGCAGACCCCACGGGGGCCGCACTGCTGATCTGCAGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131331 53 +    698298 GAGCACACGCCTGGGTGCAGACCCCACGGGGGCCACACTGCTAATCTGCAGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558683 53 - 121039945 GAGCACAGGCCTGGATGCAGACCCCACGGGGGCCGCACTGCTGATCTGCAGGT
i nomLeu3.chr6             C 0 T 53
s macFas5.chr6             181247485 53 - 181584905 GAGCACACACCTGGGTGCAGACCCCACGGAGGCTGCACTGCTGATTTGCAGGT
i macFas5.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25417957  0 -  25620257 C
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601  0 +    298490 C
e saiBol1.JH378155          16003383  0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732  0 -    438239 C
e chlSab2.chr4              90562642  0 -  91010382 C
e cerAty1.NW_012009470v1      259366  0 -  16742782 C
e colAng1.NW_012118799v1      186767  0 -    514179 C
e macNem1.NW_012012389v1      249447  0 -   1764207 C
e rheMac8.chr6             179513785  0 - 180051392 C

a score=7245.000000
s hg38.chr5_KI270793v1_alt     56133 7 +    126136 GAGCACA
s panTro5.chr5             181323396 7 - 181907262 GAGCACA
i panTro5.chr5             T 53 C 0
s panPan2.chr5             183044283 7 - 183735486 GAGCACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131384 7 +    698298 GAGCACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558683 7 - 121039945 GAGCACA
i nomLeu3.chr6             T 53 C 0
s macFas5.chr6             181247538 7 - 181584905 GACCTTA
i macFas5.chr6             C 0 T 53
e aotNan1.NW_018503740v1    25417957 0 -  25620257 C
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601 0 +    298490 C
e saiBol1.JH378155          16003383 0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732 0 -    438239 C
e chlSab2.chr4              90562642 0 -  91010382 C
e cerAty1.NW_012009470v1      259366 0 -  16742782 C
e colAng1.NW_012118799v1      186767 0 -    514179 C
e macNem1.NW_012012389v1      249447 0 -   1764207 C
e rheMac8.chr6             179513785 0 - 180051392 C

a score=60859.000000
s hg38.chr5_KI270793v1_alt     56140 48 +    126136 CGCCTGGGTGCAGACCCCACGGGGGCCGCACTGCTGATCTGCAGATGA
s panTro5.chr5             181323403 48 - 181907262 CACCTGGGTGCAGACCCCACGGGGGCCATACTGCTGATCTGCAGGTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044290 48 - 183735486 CGCCTGGGTGCAGACCCCACGGGGGCCGCACTGCTGATCTGCAGGTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131391 48 +    698298 CGCCCGGGAGCAGACCCCACGGGGGCCACACTGCTGATCTGCAGATGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558690 48 - 121039945 GGCCTGGATGCAGACCCCACGGGGGCCGCACTGCTGATCTGCAGGTGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181247492 48 - 181584905 CACCTGGGTGCAGACCCCACGGAGGCTGCACTGCTGATTTGCAGGTGA
i macFas5.chr6             T 53 T 53
e aotNan1.NW_018503740v1    25417957  0 -  25620257 C
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601  0 +    298490 C
e saiBol1.JH378155          16003383  0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732  0 -    438239 C
e chlSab2.chr4              90562642  0 -  91010382 C
e cerAty1.NW_012009470v1      259366  0 -  16742782 C
e colAng1.NW_012118799v1      186767  0 -    514179 C
e macNem1.NW_012012389v1      249447  0 -   1764207 C
e rheMac8.chr6             179513785  0 - 180051392 C

a score=39854.000000
s hg38.chr5_KI270793v1_alt     56188 31 +    126136 GCACACACCCGGGAGCAGACCCCACGGGGGC
s panTro5.chr5             181323451 31 - 181907262 GCACACACCTGGGTGCAGACCCCACGGGGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044338 31 - 183735486 GCACACGCCTGGGTGCGGACCCCATGGGGGC
i panPan2.chr5             C 0 T 53
s gorGor5.CYUI01015805v1      131439 31 +    698298 GCACACACCCGGGAGCAGACCCCACGGGGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558738 31 - 121039945 GCACACGCCTGGGTGCAGACCCCACGGGGGC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181247487 31 - 181584905 GCACACACCTGGGTGCAGACCCCACGGAGGC
i macFas5.chr6             T 53 C 0
e aotNan1.NW_018503740v1    25417957  0 -  25620257 C
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601  0 +    298490 C
e saiBol1.JH378155          16003383  0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732  0 -    438239 C
e chlSab2.chr4              90562642  0 -  91010382 C
e cerAty1.NW_012009470v1      259366  0 -  16742782 C
e colAng1.NW_012118799v1      186767  0 -    514179 C
e macNem1.NW_012012389v1      249447  0 -   1764207 C
e rheMac8.chr6             179513785  0 - 180051392 C

a score=29165.000000
s hg38.chr5_KI270793v1_alt     56219 22 +    126136 CGCACTGCTGATCTGCAGGTGA
s panTro5.chr5             181323482 22 - 181907262 CGCACTGCTGATCTGCAGGTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044316 22 - 183735486 CGCACTGCTGATCTGCAGGTGA
i panPan2.chr5             T 53 C 0
s gorGor5.CYUI01015805v1      131470 22 +    698298 CACACTGCTGATCTACAGGTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558769 22 - 121039945 CGCACTGCTGATCTGCAGGTGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181247518 22 - 181584905 TGCACTGCTGATTTGCAGGTGA
i macFas5.chr6             C 0 T 53
e aotNan1.NW_018503740v1    25417957  0 -  25620257 C
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601  0 +    298490 C
e saiBol1.JH378155          16003383  0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732  0 -    438239 C
e chlSab2.chr4              90562642  0 -  91010382 C
e cerAty1.NW_012009470v1      259366  0 -  16742782 C
e colAng1.NW_012118799v1      186767  0 -    514179 C
e macNem1.NW_012012389v1      249447  0 -   1764207 C
e rheMac8.chr6             179513785  0 - 180051392 C

a score=38634.000000
s hg38.chr5_KI270793v1_alt     56241 31 +    126136 GCACATGCCCGGGAGCAGACCCCACGGGGGC
s panTro5.chr5             181323504 31 - 181907262 GCACACGCCTGGGTGCAGACCCCACGGGGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044338 31 - 183735486 GCACACGCCTGGGTGCGGACCCCATGGGGGC
i panPan2.chr5             C 0 T 53
s gorGor5.CYUI01015805v1      131492 31 +    698298 GCACACGCCCGGAAGCGGACCCCACGGGGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558791 31 - 121039945 GCACACGCCTGGGTGCAGACCCCACGGGGGC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181247487 31 - 181584905 GCACACACCTGGGTGCAGACCCCACGGAGGC
i macFas5.chr6             T 53 C 0
e aotNan1.NW_018503740v1    25417957  0 -  25620257 C
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601  0 +    298490 C
e saiBol1.JH378155          16003383  0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732  0 -    438239 C
e chlSab2.chr4              90562642  0 -  91010382 C
e cerAty1.NW_012009470v1      259366  0 -  16742782 C
e colAng1.NW_012118799v1      186767  0 -    514179 C
e macNem1.NW_012012389v1      249447  0 -   1764207 C
e rheMac8.chr6             179513785  0 - 180051392 C

a score=27904.000000
s hg38.chr5_KI270793v1_alt     56272 21 +    126136 CACACTGCTGATCTGCAGGTG
s panTro5.chr5             181323535 21 - 181907262 CACACTGCTGATCTGCAGGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044316 21 - 183735486 CGCACTGCTGATCTGCAGGTG
i panPan2.chr5             T 53 C 0
s gorGor5.CYUI01015805v1      131523 21 +    698298 CACACTGCTGATCTGCAGGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558822 21 - 121039945 CGCACTGCTGATCTGCAGGTG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181247518 21 - 181584905 TGCACTGCTGATTTGCAGGTG
i macFas5.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25417957  0 -  25620257 C
e otoGar3.GL873745           1860790 3778 -   2165740 I
e cebCap1.NW_016108158v1       86601  0 +    298490 C
e saiBol1.JH378155          16003383  0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732  0 -    438239 C
e chlSab2.chr4              90562642  0 -  91010382 C
e cerAty1.NW_012009470v1      259366  0 -  16742782 C
e colAng1.NW_012118799v1      186767  0 -    514179 C
e macNem1.NW_012012389v1      249447  0 -   1764207 C
e rheMac8.chr6             179513785  0 - 180051392 C

a score=1911.000000
s hg38.chr5_KI270793v1_alt     56293 1 +    126136 A
s panTro5.chr5             181323556 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044337 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131544 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558843 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181247539 1 - 181584905 A
i macFas5.chr6             C 0 T 36
s otoGar3.GL873745           1864568 1 -   2165740 A
i otoGar3.GL873745         I 3778 C 0
e aotNan1.NW_018503740v1    25417957 0 -  25620257 C
e cebCap1.NW_016108158v1       86601 0 +    298490 C
e saiBol1.JH378155          16003383 0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732 0 -    438239 C
e chlSab2.chr4              90562642 0 -  91010382 C
e cerAty1.NW_012009470v1      259366 0 -  16742782 C
e colAng1.NW_012118799v1      186767 0 -    514179 C
e macNem1.NW_012012389v1      249447 0 -   1764207 C
e rheMac8.chr6             179513785 0 - 180051392 C

a score=4795.000000
s hg38.chr5_KI270793v1_alt     56294 4 +    126136 GCAC
s panTro5.chr5             181323557 4 - 181907262 GCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044338 4 - 183735486 GCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131545 4 +    698298 GCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558844 4 - 121039945 GCAC
i nomLeu3.chr6             C 0 C 0
s otoGar3.GL873745           1864569 4 -   2165740 GCTC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25417957 0 -  25620257 C
e cebCap1.NW_016108158v1       86601 0 +    298490 C
e saiBol1.JH378155          16003383 0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e canFam3.chr34             11717322 36 +  42124431 I
e manLeu1.NW_012110441v1      156732 0 -    438239 C
e chlSab2.chr4              90562642 0 -  91010382 C
e cerAty1.NW_012009470v1      259366 0 -  16742782 C
e colAng1.NW_012118799v1      186767 0 -    514179 C
e macNem1.NW_012012389v1      249447 0 -   1764207 C
e macFas5.chr6             181247540 36 - 181584905 T
e rheMac8.chr6             179513785 0 - 180051392 C

a score=10784.000000
s hg38.chr5_KI270793v1_alt     56298 9 +    126136 ACGCCTGGG
s panTro5.chr5             181323561 9 - 181907262 ACGCCTGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044342 9 - 183735486 ACGCCTGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131549 9 +    698298 ACGCCTGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558848 9 - 121039945 ACGCCTGGA
i nomLeu3.chr6             C 0 C 0
s otoGar3.GL873745           1864573 9 -   2165740 ACACCTTGC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11717358 9 +  42124431 ACATCCTGC
i canFam3.chr34            I 36 C 0
e aotNan1.NW_018503740v1    25417957 0 -  25620257 C
e cebCap1.NW_016108158v1       86601 0 +    298490 C
e saiBol1.JH378155          16003383 0 +  16417988 C
e calJac3.chr2             203840961 1905 + 204313951 M
e manLeu1.NW_012110441v1      156732 0 -    438239 C
e chlSab2.chr4              90562642 0 -  91010382 C
e cerAty1.NW_012009470v1      259366 0 -  16742782 C
e colAng1.NW_012118799v1      186767 0 -    514179 C
e macNem1.NW_012012389v1      249447 0 -   1764207 C
e macFas5.chr6             181247540 36 - 181584905 T
e rheMac8.chr6             179513785 0 - 180051392 C

a score=7381.000000
s hg38.chr5_KI270793v1_alt     56307 4 +    126136 TGCG
s panTro5.chr5             181323570 4 - 181907262 TGCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044351 4 - 183735486 TGCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131558 4 +    698298 TGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558857 4 - 121039945 TGCA
i nomLeu3.chr6             C 0 C 0
s saiBol1.JH378155          16003383 4 +  16417988 TGCG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1864582 4 -   2165740 TGGA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11717367 4 +  42124431 TGCA
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25417957 0 -  25620257 C
e cebCap1.NW_016108158v1       86601 0 +    298490 C
e calJac3.chr2             203840961 1905 + 204313951 M
e manLeu1.NW_012110441v1      156732 0 -    438239 C
e chlSab2.chr4              90562642 0 -  91010382 C
e cerAty1.NW_012009470v1      259366 0 -  16742782 C
e colAng1.NW_012118799v1      186767 0 -    514179 C
e macNem1.NW_012012389v1      249447 0 -   1764207 C
e macFas5.chr6             181247540 36 - 181584905 T
e rheMac8.chr6             179513785 0 - 180051392 C

a score=93167.000000
s hg38.chr5_KI270793v1_alt     56311 13 +    126136 GACCCCACGGGGG----------
s panTro5.chr5             181323574 13 - 181907262 GACCCCATGGGGG----------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044355 13 - 183735486 GACCCCATGGGGG----------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131562 13 +    698298 GACCCCACGGGGG----------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558861 13 - 121039945 GACCCCATGGGGG----------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179513785 13 - 180051392 GACCCCACGGAGG----------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181247504 13 - 181584905 GACCCCACGGAGG----------
i macFas5.chr6             T 36 C 0
s macNem1.NW_012012389v1      249447 13 -   1764207 GACCCCACGGAGG----------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      259366 13 -  16742782 GACCCCACGGAGG----------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562642 13 -  91010382 GACCCCACGGAGG----------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156732 13 -    438239 GACCCCACGGAGG----------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186767 13 -    514179 GACCCCACGGAGG----------
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16003387 12 +  16417988 GACCCCACAGGG-----------
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1864586 13 -   2165740 GACTCCACATGGG----------
i otoGar3.GL873745         C 0 I 2
s canFam3.chr34             11717371 23 +  42124431 GACCCCACAGGGTAACTTGGCTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25417957  0 -  25620257 C
e cebCap1.NW_016108158v1       86601  0 +    298490 C
e calJac3.chr2             203840961 1905 + 204313951 M

a score=13600.000000
s hg38.chr5_KI270793v1_alt     56324 1 +    126136 C
s panTro5.chr5             181323587 1 - 181907262 C
i panTro5.chr5             C 0 I 21
s panPan2.chr5             183044368 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      131575 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 I 53
s nomLeu3.chr6             120558874 1 - 121039945 C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179513798 1 - 180051392 C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181247517 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      249460 1 -   1764207 C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      259379 1 -  16742782 C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562655 1 -  91010382 C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156745 1 -    438239 C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186780 1 -    514179 C
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16003399 1 +  16417988 C
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       86601 1 +    298490 C
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25417957 1 -  25620257 C
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1864601 1 -   2165740 C
i otoGar3.GL873745         I 2 I 4
s canFam3.chr34             11717394 1 +  42124431 C
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203840961 1905 + 204313951 M

a score=28014.000000
s hg38.chr5_KI270793v1_alt     56325 6 +    126136 CGCACT--
s panPan2.chr5             183044369 6 - 183735486 ACCAAT--
i panPan2.chr5             C 0 I 15
s gorGor5.CYUI01015805v1      131629 6 +    698298 CGCACT--
i gorGor5.CYUI01015805v1   I 53 C 0
s nomLeu3.chr6             120558875 6 - 121039945 CGCACT--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179513799 6 - 180051392 TGCACT--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181247518 6 - 181584905 TGCACT--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      249461 6 -   1764207 TGCACT--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      259380 6 -  16742782 TGCACT--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562656 6 -  91010382 TGCACT--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156746 6 -    438239 TGCACT--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186781 6 -    514179 TGCACT--
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16003400 6 +  16417988 CACGCT--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       86602 6 +    298490 CATGCT--
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25417958 6 -  25620257 CGCGCT--
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1864606 4 -   2165740 --CACA--
i otoGar3.GL873745         I 4 I 2
s canFam3.chr34             11717395 6 +  42124431 --CACTCT
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181323588 21 - 181907262 I
e calJac3.chr2             203840961 1905 + 204313951 M

a score=48780.000000
s hg38.chr5_KI270793v1_alt     56331 7 +    126136 GCTGATC
s gorGor5.CYUI01015805v1      131635 7 +    698298 GCTGATC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558881 7 - 121039945 GCTGATC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179513805 7 - 180051392 GCTGATT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181247524 7 - 181584905 GCTGATT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      249467 7 -   1764207 GCTGATT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      259386 7 -  16742782 GCTGATT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562662 7 -  91010382 GCTGATT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156752 7 -    438239 GCTGATT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186787 7 -    514179 GCTGATT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16003406 7 +  16417988 GCTGACT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       86608 7 +    298490 GCTGACT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25417964 7 -  25620257 GCTGACT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1864612 7 -   2165740 GCTGGGT
i otoGar3.GL873745         I 2 I 1
s canFam3.chr34             11717401 5 +  42124431 --GGGTT
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181323588 21 - 181907262 I
e calJac3.chr2             203840961 1905 + 204313951 M
e panPan2.chr5             183044375 15 - 183735486 I

a score=4869138.000000
s hg38.chr5_KI270793v1_alt     56338 519 +    126136  
s panTro5.chr5             181323609 519 - 181907262  
i panTro5.chr5             I 21 C 0
s panPan2.chr5             183044390 519 - 183735486  
i panPan2.chr5             I 15 C 0
s gorGor5.CYUI01015805v1      131642 519 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120558888 521 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179513812 513 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181247531 513 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      249474 513 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      259393 513 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90562669 513 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      156759 513 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      186794 513 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16003413 519 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       86615 515 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25417971 495 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1864620 509 -   2165740  
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11717406 510 +  42124431  
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203840961 1905 + 204313951 M

a score=4175508.000000
s hg38.chr5_KI270793v1_alt     56857 449 +    126136  
s panTro5.chr5             181324128 449 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183044909 449 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      132161 449 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120559409 449 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179514325 450 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181248044 450 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      249987 450 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      259906 450 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90563182 450 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      157272 450 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      187307 493 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203842910 438 + 204313951  
i calJac3.chr2             M 1905 C 0
s saiBol1.JH378155          16003932 438 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       87130 431 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25418466 434 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1865129 341 -   2165740  
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11717916 461 +  42124431  
i canFam3.chr34            C 0 C 0

a score=910519.000000
s hg38.chr5_KI270793v1_alt     57306 103 +    126136 TGAAGGGACTT-TGTGGTGAAATGGCC-ACCTAAGCCCA-------------------------CGCCGTCCAGG--CTGCACTGCGCAGGCCCGAGGGAGCCCGTC---GGCTGCCATCAGAGAGGG-CCCCGGG-
s panTro5.chr5             181324577 103 - 181907262 TGAAGGGACTT-TGTGGTGAAATGGCC-ACCTAAGCCCA-------------------------CGCCGTCCAGG--CTGCACTGCGCAGGCCCGAGGGAGCACGTC---GGCTGCCATCAGAGAGGG-CCCCGGG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183045358 103 - 183735486 TGAAGGGACTT-TGTGGTGAAATGGCC-ACCTAAGCCCA-------------------------CGCCGTCCAGG--CTGCACTGCGCAGGCCCGAGGGAGCACGTC---GGCTGCCATCAGAGAGGG-CCCCGGG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      132610 103 +    698298 TGAAGGGACTT-TGTGGTGAAATGGCC-ACCTAAGCCCA-------------------------CGCCGTCCAGG--CTGCACTGCGCAGGCCCGAGGGAGCCCGTC---GGCTGCCATCAGAGAGGA-CCCCGGG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120559858 103 - 121039945 TGAAGGGACTT-TGTGGTGAAATGACC-ACCTAAGCCCA-------------------------CGCCGTCCAGG--CTGCACTGCGCAGGCCCAAGGGAGCCCATT---GGCTGCCATCAGAGAGGG-CCCCGGG-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179514775 104 - 180051392 TGAAGGGACTT-TGTGGTGAAATGGCC-ACCCAAGCCCA-------------------------TGCCGTCCAGG--CTGCACTGCGCAGGCCCAAGGGAGCCCATC---GGCTGCCGTCAGAGAGGGACCCTGGG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181248494 104 - 181584905 TGAAGGGACTT-TGTGGTGAAATGGCC-ACCCAAGCCCA-------------------------TGCCGTCCAGG--CTGCACTGCGCAGGCCCAAGGGAGCCCATC---GGCTGCCGTCAGAGAGGGACCCTGGG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      250437 104 -   1764207 TGAAGGGACTT-TGTGGTGAAATGGCC-ACCCAAGCCCA-------------------------TGCCGTCCAGG--CTGCACTGCGCAGGCCCAAGGGAGCCCATC---GGCTGCCGTCAGAGAGGGACCCCGGG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      260356 104 -  16742782 TGAAGGGACTT-TGTGGTGAAATGGCC-ACCCAAGCCCA-------------------------TGCCGTCCAGG--CTGCACTGCGCAGGCCCGAGGGAGCCCATC---GGCTGCCGTCAGAGAGGGACCCTGGG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90563632 104 -  91010382 TGAAGGGACTT-TGTGGTGAAATGGCC-ACCCAAGCCCA-------------------------TGCCGTCCAGG--CTGCACTGCGCAGGCCCATCGGAGCCCATC---GGCTGCCGTCAGAGAGGGACCCTGGG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      157722 104 -    438239 TGAAGGGACTT-TGTGGTGAAATGGCC-ACCCAAGCCCA-------------------------TGCCGTCCAGG--CTGCACTGCGCAGGCCCGAGGGAGCCCATC---GGCTGCCGTCAGAGAGGGACCCTGGG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      187800 104 -    514179 TAAAGGGACTT-TGTGGTGAAATGGCC-ACCCAAGCCCA-------------------------TGCCGTCCAGG--CTGCACTGCGCAGGCCCGAGGGAGCCCATC---GGCTGCTGTCAGAGAGGGACCCTGGG-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203843348 102 + 204313951 TGAAGGGTCTC-TGTGGTGAAATGGTC--CCCAAGCACA-------------------------TGCTGTCCACA--CTGAGCCACACAGGCCTGTGGGAACCCATC---GGCAGCCGTCAGAGAGGG-CCTTGGG-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16004370 101 +  16417988 CCAAGGGTCT--TGTGGTGAAATGGCC--CCCAAGCACG-------------------------TGCCGCCCACA--CCGCGCAGCGCAGGCCCGAGGGCACCCGTC---GGCAGCCGTCAGAGAGGG-CCCTGGG-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       87561  91 +    298490 GGAAGGGTCTT-TGTGGTGAAATGG-------------G-------------------------TGCCGTCCACA--CTGCGCCACGCAGGCCTGAGGGAACCCGTC---GGCAGCCGTCAGAGAGGG-CCCTGGA-
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25418900 101 -  25620257 TGAAGGGTCTT-TGTGGTGAAATGA-C--CCCAAGCACA-------------------------TGCCGTCCACA--CTGCGCCGCGTAGGCCTGAGGGAACCCATC---GGCAGCCGTCAGAGAGGG-CCCTGGG-
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11718377 134 +  42124431 CAAAGACCCCTCTGGGGTGAGATGGCCCATGTGAGCACAGAGAACAGTTGTTAGAGTATTTAGCTGTTAACTAAAATTTCCACTACACTAGCC--AAGGTGTCCACCTGATGCAGCCCCTGGTGAGGG-GCCCACGT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1865470   0 -   2165740 C

a score=80631.000000
s hg38.chr5_KI270793v1_alt     57409 10 +    126136 GCCTGGCC--CC
s panTro5.chr5             181324680 10 - 181907262 GCCTGGCC--CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183045461 10 - 183735486 GCCTGGCC--CC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      132713 10 +    698298 GCCTGGCC--CC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120559961 10 - 121039945 GCCTGGCC--CC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179514879 10 - 180051392 GCCTGGCC--CC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181248598 10 - 181584905 GCCTGGCC--CC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      250541 10 -   1764207 GCCTGGCC--CC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      260460 10 -  16742782 GCCTGGCC--CC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90563736 10 -  91010382 GCCTGGCC--CC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      157826 10 -    438239 GCCTGGCC--CC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      187904 10 -    514179 GCCCGGCC--CC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203843450  8 + 204313951 GCCTGGCC----
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16004471  7 +  16417988 GCCTGG-C----
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       87652  6 +    298490 GCCTGG------
i cebCap1.NW_016108158v1   C 0 I 1
s aotNan1.NW_018503740v1    25419001 10 -  25620257 GCCTGGCCCC--
i aotNan1.NW_018503740v1   C 0 I 201
s otoGar3.GL873745           1865470 10 -   2165740 GCCTGGTC--TC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11718511 10 +  42124431 GCCTGGCC--CC
i canFam3.chr34            C 0 C 0

a score=479752.000000
s hg38.chr5_KI270793v1_alt     57419  71 +    126136 ACCTGGGTGTGCACAGATGGCCACCAGAGGTTGTGATCCCATGT-GGGG---------------GGTGG-----------------------GTCAGCCGTTGCCTTGCA
s panTro5.chr5             181324690  71 - 181907262 ACCTGGGTGTGCACAGATGGCCACCAAAGGCTGTGATCCCATGT-GGGG---------------GGTGG-----------------------GTCAGCCGTTGCCTTGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183045471  71 - 183735486 ACCTGGGTGTGCACAGATGGCCACCAGAGGTTGTGATCCCATGT-GGGG---------------GGTGG-----------------------GTCAGCCATTGCCTTGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      132723  72 +    698298 ACCTGGGTGTGCACAGATGGCCACCAGAGGTTGTGATCCCATGTGGGGG---------------GGTGG-----------------------GTCAGCCGTTGCCTTGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120559971  71 - 121039945 ACCTGGCTGTGCACAGATGGCCACCAGAGGTTGTGATCCCGTGT-GGGG---------------GGCGG-----------------------GTCAGCCATTGCCTTGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179514889  70 - 180051392 GCCTGGCTGTGCGCAGATGGCCACCAGAGGTTGTGATCCCGTGT--AGG---------------GGAGG-----------------------CTCAGCCATTGCCTTGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181248608  70 - 181584905 GCCTGGCTGTGCGCAGATGGCCACCAGAGGTTGTGATCCCGTGT--AGG---------------GGAGG-----------------------CTCAGCCATTGCCTTGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      250551  70 -   1764207 GCCTGGCTGTGCGCAGATGGCCACCAGAGGTTGTGATCCCGTGT--AGG---------------GGAGG-----------------------CTCAGCCATTGCCTTGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      260470  70 -  16742782 ACCTGGCTGTGCACAGATGGCCACCAGAGGTTGTGATCCCGTGT--GGG---------------GGAGG-----------------------CTCAGCCATTGCCTTGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90563746  70 -  91010382 GCCTGGCTGTGCGCAGATGGCCACCAGAGGTTGTGATCCCGTGT--GGG---------------GGAGG-----------------------CTCAGCCATTGCCTTGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      157836  70 -    438239 ACCTGGCTGTGCACAGATGGCCACCAGAGGTTGTGATCCCGTGT--GGG---------------GGAGG-----------------------CTCAGCCATTGCCTTGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      187914  71 -    514179 GCCTGGCTGTGCGCAGATGACCACCAGAGGTTGTGATCCCATGT-GGGG---------------GGAGG-----------------------GCCAGCCGTTGCCTTGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203843459  86 + 204313951 CCTGGACTGTGCACGAGTGACCGCCAAAGGCTCTGATGCTGTGG-GGAGGTCACAACCCCGTGTGGTGG-----------------------GTCAGCCACTGCCTCGCT
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16004479  86 +  16417988 CCTGGGCTGTGCACAAGTGACCGCCAAAGGCTGTGATGCTGTGG-GGAGGTCACGACCCTGTGTGGAGG-----------------------GTCAGCCACTGCCTCGCT
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1       87659 109 +    298490 CCTGGGCTGTGCACGAGTGACCGCCAAAGGCTGTGATGCTGTGG-GGAGATCATGACCCCGTGTGGCGGGTCCAACCCCGTGTGGCGGTCACGTCAGCCACTGCCTCGCT
i cebCap1.NW_016108158v1   I 1 C 0
s otoGar3.GL873745           1865480  62 -   2165740 -------TGTGCATAAATGACGTGAGTGAGCTGTGATTCCTTGC---AT---------------GGTGG-----------------------ACTCACTTTCTCCTCCCA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11718521  54 +  42124431 -TGTGTCTGTGCACAAGTGCACAAGGAGGGTTGTG-TCCCTTGC------------------------------------------------ACC------TCCCCTGCA
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25419011 201 -  25620257 I

a score=2074077.000000
s hg38.chr5_KI270793v1_alt     57490 214 +    126136 -GCTCTTGGTACATTTGTTT--CCATTTTTATTTTGAGTTTGCGGAGATTAATGTCAACCAC---------TCACCATTCT-C--------------------------TAGTCCT----AAGAA---AG------CCGCCCAGT--AACTGCAGAGAAAATC--ATTCATCTCTTGGGGCAAATCAGATTT-GGGGCT-CAGTATCAACCTTAACAAAGAACTGACCACCCAGCAAGGGCTGCGACTACGATGAAGATAAACAAAGAGGGC
s panTro5.chr5             181324761 214 - 181907262 -GCTCTTGGTACATTTGTTT--CCATTTTTATTTTGAGTTTGTGGAGATTAATGTCAACCAC---------TCACCATTCT-C--------------------------TAGTCCT----AAGAA---AG------CCGCCCAGT--AACTGCAGAGAAAATC--ATTCATCTCTTGGGGCAAATCAGATTT-GGGGCT-CAGTATCAACCTTAACAAAGAACTGACCACCCAGCAAGGGCTGCGACTACGATGAAGATAAACAAAGAGGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183045542 214 - 183735486 -GCTCTTGGTACATTTGTTT--CCATTTTTATTTTGAGTTCGTGGAGATTAATGTCAACCAC---------TCACCATTCT-C--------------------------TAGTCCT----AAGAA---AG------CCGCCCAGT--AACTGCAGAGAAAATC--ATTCATCTCTTGGGGCAAATCAGATTT-GGGGCC-CAGTATCAACCTTAACAAAGAACTGACCACCCAGCAAGGGCTGCGACTACGATGAAGATAAACAAAGAGGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      132795 214 +    698298 -GCTCTTGGTACATTTGTTT--CCATTTTTATTTTGAGTTTGTGGAGATTAATGTCAACTAC---------TCACCATTCT-C--------------------------TAGTCCT----AAGAA---AG------CCGCCCAGT--AACTGCAGAGAAAATC--ATTCATCTCTTGGGGCAAATCAGATTT-GGGGCT-CAGTATCAACCTTAAGAAAGAACTGACCACCCAGCAAGGGCTGCGACTACGATCAAGATAAACAAAGAGGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120560042 214 - 121039945 -GCTCTTTGTACATTTGTTT--CCATTTTTATTTTGAGTTTGCGCAGATTAATGTCAACCGC---------TCGCCATTCT-C--------------------------TAGTCCT----ACGAA---AG------CCGCCCAGT--AACTGCAGAGAAAATC--ATTCTTCTCTCGGGGCAAATCAGATTT-GGCGCT-TGGTATCAACCTTAACAAAGAACTGACCACCCAGCAAGGGCTCTGACTAAGATGAAGATAAACAAGGAGGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179514959 208 - 180051392 -GCTCTTGGTACATTTGTTT--CCAATTTTATTTTGAGTTTGCGGAGATTAATGTCAACCAC---------TCACCACTCT-C--------------------------TAGTCCT----AAGAA---AG------CCGCCCAGT--AACTGCAGAGAAAATC--ATTCATCTCTCGGGGCAAATCAGATTT-GGGGCT-CGGTATCAACCTTAACAAAGAACTGATTGCCCAGCAAGGACT------AAGATGAAGATAAACAAAGAGGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181248678 208 - 181584905 -GCTCTTGGTACATTTGTTT--CCAATTTTATTTTGAGTTTGCGGAGATTAATGTCAACCAC---------TCACCACTCT-C--------------------------TAGTCCT----AAGAA---AG------CCGCCCAGT--AACTGCAGAGAAAATC--ATTCATCTCTCGGGGCAAATCAGATTT-GGGGCT-CGGTATCAACCTTAACAAAGAACTGATCGCCCAGCAAGGACT------AAGATGAAGATAAACAAAGAGGGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      250621 208 -   1764207 -GCTCTTGGTACATTTGTTT--CCAATTTTATTTTGAGTTTGCGGAGATTAATGTCAACCAC---------TTACCACTCT-C--------------------------TAGTCCT----AAGAA---AG------CCGCCCAGT--AACTGCAGAGAAAATC--ATTCATCTCTCGGGGCAAATCAGATTT-GGGGCT-CGGTATCAACCTTAACAAAGAACTGATCGCCCAGCAAGGACT------AAGATGAAGATAAACAAAGAGGGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      260540 208 -  16742782 -GCTCTTGGTACATTTGTTT--CCAATTTTATTTTGAGTTTGCGGAGATTAATGTCAACCAC---------TCACCACTCT-C--------------------------TAGTCCT----AAGAA---AG------CAGCCCAGT--AACTGCAGAGAAAATC--ATTCATCTCCCGGGGCAAATCAGATTT-GGGGCT-CGGTATCAACCTTAACAAAGAACTGATCGCCCAGCAAGGACT------AAGATGAAGATAAACAAAGAGGGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90563816 208 -  91010382 -GCTCTTGGTATATTTGTTT--CCAATTTTATTTTGAGTTTGCGGAGGTTAATGTCAACCAC---------TCACCACTCT-C--------------------------TAGTCCT----AAGAA---AG------CCGCCCAGT--AACTGCAGAGAAAATC--ATTCATCTCTCGGGGCAAATCAGATTT-GGGGCT-CAGTATCAACCTTAACAAAGAACTGATCCCCCAGCAAGGACT------AAGATGAAGATAAACAAAGAGGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      157906 208 -    438239 -GCTCTTGGTACATTTGTTT--CCAATTTTATTTTGAATTTGCGGAGATTAATGTCAACCAC---------TCACCACTCT-C--------------------------TAGTCCT----AAGAA---AG------CTGCCCAGT--AACTGCAGAGAAAATC--ATTCATCTCCGGGGGCAAATCAGATTT-GGGGCT-TGGTATCAACCTTAACAAAGAACTGATCGCCCAGCAAGGACT------AAGATGAAGATAAACAAAGAGGGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      187985 214 -    514179 -GCTCGTGGTACATTTGTTT--CCATTTTTATTTTGAGTTTGCGGAGATTAATGTCAACCAC---------TCACCATTCT-C--------------------------TAGTCCT----AAGAA---AG------CCGCCCAGT--CACTGCAGAGAAAATC--ATTCATTTCCCAGGGCAAATCAGATTT-GGGGCT-CGGTATCAACCTTAATAAAGAACTGATCACCCAGCAAGGACTCTGACCAAGATGAAGATAAACAAAGAGGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203843545 211 + 204313951 -GCTCGTGGTACATTTGTTT--CCATTTTAATTTTGAGTTTGTGGGGATTAGTGTCAACCAC---------CCACCACCCT-C--------------------------TAGT-CT----AAGAA---AG------CCGCCGGGT--AACTGCAAAGAAAATC--ATTCCCCTC--GCGGCAAATCAGATCT-GGGGCT-CGGTACCAGCCTTAACAATGAATGGGTCACCTAGCAAGGGCTCAGACTAAGATGAAGAAAAACAAAGAGGCC
i calJac3.chr2             C 0 I 5
s saiBol1.JH378155          16004565 213 +  16417988 -GCTCGTGGTACATTTGTTT--CCATTTTAATTTTGAGTTTGTGGAGGTTAATGTCAACCAC---------CCACCATCCT-C--------------------------TAGT-CT----AAGAA---AG------CCGCCCGGT--GACTGTAGAGAAAATC--ATTCCCCTCTTGGGGCAAATCAGATCT-GGGGCT-CGGGACCAGCCTTAACAATGAACGGGTCACCCGGCAAAGGCTCAGACTAAGATGAAGAAAAACAAAGAGGCC
i saiBol1.JH378155         C 0 I 2
s cebCap1.NW_016108158v1       87768 212 +    298490 -GCTCGTGGTACATTTGTTT--CCACTTTAATTTTGAGCTTGTGGAGATTCATGTCAACCAC---------CCACCATCCT-C--------------------------TAGT-CC----AAGAA---AG------CCTCCTGGT--AACTGTGGAGAAAACC--ATTTCCCTCTCGGGGCGAATCAGATCT-GGGGCT-CGGTACCAG-CTGAACAATGAACGTGGCACCCAGCAAGGGCTCAGACTAAGATGAAGAAAAACAAAGAGGCC
i cebCap1.NW_016108158v1   C 0 I 59
s aotNan1.NW_018503740v1    25419212 211 -  25620257 -GCTCATGGTACATTTGTTC--CCATGTTAATTTTGAGTTTGTGGAGATTAATGTCAACCAC---------CCACCATCCT-C--------------------------TGGT-CT----AAGAA---AG------CCG--TGGT--AACTGTAGAGAAAATC--ATTCCCCTCTCGGGGCAAATCAGACCT-GGGGCT-CGGTACCAGCCTTAACAACGAACAGGCCACCCAGCAAGGGTCTAGACTAAGATGAAGACAGACAAAGAGGCC
i aotNan1.NW_018503740v1   I 201 C 0
s otoGar3.GL873745           1865542 226 -   2165740 -GCTCTTGGTCTGTGTGTTT--AGATTTTCATATTGAGGACACAGAGATTAGGGTCAATTGC---------CCATGTCTCTAC--------------------------TAACCCTTGTGGAGCATGCAG------CCTCCCAATAAAACTGTAGGGAACCACAAATTCATCCCT-AAGGCAAATCAGATTCAGGGGCTACAGTGTCAAATTGAATAAAGAACTAACCACCCAGAAAGTAATCAGATTAAGGC-AAGGGGAACAGAGAGTCT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11718575 253 +  42124431 ACCTCTTGGTGCATTCATTTAGCCTGTTTTATATTGAGTAT-----GATTAACGTCAAACGCCCCATGTTTCCACAAATTT-CAAATTAGCAGAGTCTGAATTTGTGTTTATTCCT----TGTAA---AGTATGTACCTCTTGGTAAAACTGCAGAGCAAGTA--ATTCAGCCCTAAGGGTAAATAATCTGG-GGAATA-TGGTATCATATTAAATTAGAAACTGACCATCCAGCCTCGA-TGAGATTAAGAT-AAGAAAGATGTAGAGTGT
i canFam3.chr34            C 0 C 0

a score=116185.000000
s hg38.chr5_KI270793v1_alt     57704 16 +    126136 ATGACAGTTAGAGCTG
s panTro5.chr5             181324975 16 - 181907262 ATGACAGTTAGAGCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183045756 16 - 183735486 ATGACAGTTAGAGCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133009 16 +    698298 ATGACAGTTAGAGCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120560256 12 - 121039945 ATGAC----AGAGCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179515167 16 - 180051392 ATGACAGTTAGAGCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181248886 16 - 181584905 ATGACAGTTAGAGCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      250829 16 -   1764207 ATGACAGTTAGAGCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      260748 16 -  16742782 ATGACAGTTAGAGCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90564024 16 -  91010382 ATGACAGTTAGAGCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      158114 16 -    438239 ATGACAGTTAGAGCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      188199 16 -    514179 ATGACAGTTAGAGCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203843761 16 + 204313951 Attagggttagggttg
i calJac3.chr2             I 5 I 1828
s saiBol1.JH378155          16004780 13 +  16417988 ---AGGGTTGGGGCTG
i saiBol1.JH378155         I 2 C 0
s aotNan1.NW_018503740v1    25419423 15 -  25620257 -CAAGGGTCAGGGCTG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1865768 16 -   2165740 ATTATAATTACATCTG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11718828 15 +  42124431 -TATCAAGTTTGCCTG
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1       87980 59 +    298490 I

a score=333178.000000
s hg38.chr5_KI270793v1_alt     57720 46 +    126136 ATTCTGAGGACCTCCTCTTTACAAAAAGAATTCGCCCAGCTGGGAT
s panTro5.chr5             181324991 46 - 181907262 ATTCTGAGGAACTCCTCCTTACAAAAAGAATTCGCCCAGCTGGGAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183045772 46 - 183735486 ATTCTGAGGAACTCCTCTTTACAAAAAGAATTCGCCCAGCTGGGAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133025 46 +    698298 ATTCTGAGGACCTCCTCTTTACAAAAAGAATTCGCCCAGCTGGGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120560268 46 - 121039945 ATTCTGAGGACCTCCTCTTTACAAAAAGAATTCGCCCAGCCGGGAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179515183 46 - 180051392 ATGCTGAGGACCTCTTCTTTACACAAAGAATTCACCCAGCTGGGAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181248902 46 - 181584905 ATGCTGAGGACCTCTTCTTTACACAAAGAATTCACCCAGCTGGGAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      250845 46 -   1764207 ATGCTGAGGACCTCTTCTTTACACAAAGAATTCACCCAGCTGGGAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      260764 46 -  16742782 ATGCTGAGGACCTCTTCTTTACACAAAGAATTCACCCAGCTGGGAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90564040 46 -  91010382 ATGCTGAGGACCTCTTCTTTACACAAAGAATTCACCCAGCTGGGAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      158130 46 -    438239 ATGCTGAGGACCTCTTCTTTACACAAAGAATTCACCCAGCTGGGAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      188215 46 -    514179 ATGCTGAGGACTTCTTCTTTACACAAAGAATTCACCCAGCTGGGAT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16004793 45 +  16417988 ATTCCCAGGACCTCATCTTCACAAAAAGAATTCACCAGGCTGCAT-
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25419438 45 -  25620257 ATGCCCAGGACCTCGTCTTCACAGAAAGAATTCACCAGGCCGCAT-
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1865784 45 -   2165740 GTTCCAATGACCCCTT-TCTACAAAGGGAGTTGATTCAGCCAGGAC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11718843 43 +  42124431 ATTCCAACGACCTC---TTTATAAAGAGTATTGATTTGGCCGGAGA
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1       87980 59 +    298490 I
e calJac3.chr2             203843777 1828 + 204313951 I

a score=2240473.000000
s hg38.chr5_KI270793v1_alt     57766 260 +    126136 GTCCCTGTGGCACCGGTGTCTGCACTCAGGACTGGTCAGCCT-GGGGCC-AGGGTGGGAGGAGGAAGGGGTCTGGGGGCTGAGGACCTGGCTCCAGCCCCACCTGGACACTGGGCACCACGTGGCCCTTTCTAAATGTTAGGACCGCTGACCCTCAGGCAGCGGTGGGTCGACTGGGAATGCGGGTCAGT--GGGAGGGGCGGGTATGGAAATGGAGGTGGG-TGCTTTGCCATTGCAAAGACACCCACAGGTGAGCCTGTGCCA--
s panTro5.chr5             181325037 259 - 181907262 GTCCCTGTGGCACCGGTGTCTGCACTCAGGACTGGTCAGCCT-GGGGCC-AGGGTGGGAGGAGGAAGGGATCTGGGGGCTGAGGACCTGGCTCCAGCCCCACCTGGACACTGGGCACCATGTGGCCC-TTCTAAATGTTAGGACCGCTGACCCTCAGGCAGCGGTGGGTCGACTGGGAATGCGGGTCAGT--GGGAGGGGCGGGTATGGAAATGGAGGTGGG-TGCTTTGCCATTGGAAAGACACCCACAGGTGAGCCTGTGCCA--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183045818 259 - 183735486 GTCCCTGTGGCACCGGTGTCTGCACTCAGGACTGGTCAGCCT-GGGGCC-AGGGTGGGAGGAGGAAGGGGTCTGGGGGCTGAGGACCTGGCTCCAGCCCCACCTGGACACTGGGCACCACGTGGCCC-TTCTAAATGTTAGGACCGCTGGCCCTCAGGCAGCGGTGGGTCGACTGGGAATGCGGGTCAGT--GGGAGGGGCGGGTATGGAAATGGAGGTGGG-TGCTTTGCCATTGGAAAGACACCCACAGGTGAGCCTGTGCCA--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133071 259 +    698298 GTCCCTGTGGCACCAGTGTCTGCACTCAGGACTGGTCAGCCT-GGGGCC-AGGGTGGGAGGAGGAAGGGGTCTGGGGGCTGAGGACCTGGCTCCAGCCCCACCTGGACACTGGGCACCACGTGGCCC-TTCCAAATGTTAGGACCGCTGACCCTCAGGCAGCGGTGGGTCGACTGGGAATGCGGGTCAGT--GGGAGGGGCGGGTGTGGAAATGGAGGTGGG-TGCTTTGCCATTGCAAAGACACCCACAGGTGAGCCTGTGCCA--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120560314 259 - 121039945 GTCCCTGTGGCACCGGCGTCTGCACTCAGGACTGGTCAGCCC-GGGGCC-AGGGTGGGAGGAGGAAGGGGTCTGGGGGCTGAGGACCTGGCTCCAGCCCCACCTGGACACCGGGCGCCACGTGGCCT-TTCTAAATGTTAGGACCGCTGACCCTCAGGCAGCGATGGGTCGACCGGGAATGTGGGTCAGT--GGGAGGGGTGGGTGTGGAAATGGAGGTGGG-TGTTTTGCCATTGCAAAGACACCCACAGGTGAGCCTGTGCCA--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179515229 257 - 180051392 GTCCCTGTGGCACCAGCGTCTGCACTCAGGACT-GTC-GCCC-GGGACC-AGGGTGGGAGGAGGAAGGGGTTTGGGGGCTGAGGACCTGGCTCCAGCCCCACCTGGACACCGGGCGCCATGTGGTCT-TTCTAAATGTTAGGACCACTGACCCTCAGGCAATGGTGGGTCAACCGGGAACGTGAGTCAGT--GGGAGGGGCAGGTGTGGAAATGGAGGTGGG-CGCTTTGCCATTGCAGAGACACCCACAGGCGAGCCTGTGCCA--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181248948 257 - 181584905 GTCCCTGTGGCACCAGCGTCTGCACTCAGGACT-GTC-GCCC-GGGACC-AGGGTGGGAGGAGGAAGGGGTTTGGGGGCTGAGGACCTGGCTCCAGCCCCACCTGGACACCGGGCGCCATGTGGTCT-TTCTAAATGTTAGGACCACGGACCCTCAGGCAACGGTGGGTCAACCGGGAACGTGGGTCAGT--GGGAGGGGCAGGTGTGGAAATGGAGGTGGG-CGCTTTGCCATTGCAGAGACACCCACAGGCGAGCCTGTGCCA--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      250891 256 -   1764207 GTCCCTGTGGCA-CAGCGTCTGCACTCAGGACT-GTC-GCCC-GGGACC-AGGGTGGGAGGAGGAAGGGGTTTGGGGGCTGAGGACCTGGCTCCAGCCCCACCTGGACACCGGGCGCCATGTGGTCT-TTCTAAATGTTAGGACCACTGACCCTCAGGCAATGGTGGGTCAACCGGGAACGTGGGTCAGT--GGGAGGGGCAGGTGTGGAAATGGAGGTGGG-CGCTTTGCCATTGCAGAGACACCCACAGGCTAGCCTGTGCCA--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      260810 238 -  16742782 GTCCCTGTGGCACCAGCGTCTGCACTCAGGACT-GTCAGCCC-GGGACC-AGGGTGGGAGGAGGAAGGGGTTTGGGGGCTGAGGACCTGGCTCCAGCCCCACCTGGACACCGGGCGCCATGTGGTCT---------------------GACCCTCAGGCAACGGTGGGTCAACCGGGAACGCCGGTCAGT--GGGAGGGGCAGGTGTGGAAATGGAGGTGGG-TGCTTTGCCATTGCAGAGACACCCACAGGCGAGCCTGTGCCA--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90564086 257 -  91010382 GTCCCTGTGGCACCAGCGTCTGCACTCAGGACG-GTCAG-CC-GGGACC-AGGGTGGGAGGAGGAAGGGGTTTGGGGGCTGAGGACCTGGCTCCAGCCCCCCCTGGACACCGGGAGCCATGTGGTCT-TTCTAAATGTTAGGACCACTGACCCTCAGGCAACGGTGGGTCAACCGGGAACACGGGTCAGT--GGGAGGGACAGGTGTGGAAATGGAGGTGGG-CGCTTTGCCATTGCAGAGATACCCACAGGTGAGCCTGTGCCA--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      158176 258 -    438239 GTCCCTGTGGCACCAGCGTCTGCACTCAGGACT-GTCAGCCC-GGGACC-AGGGTGGGAGGAGGAAGGGGTTTGGGGGCTGAGGACCTGGCTCCAGCCCCATCTGGACACCGGGCGCCATGTGGTCT-TTCTAAATGTTAGGACCACTGACCCTCAGGCAACGGTGGGTCAACCGGGAACGCGGGTCAGT--GGGAGGGGCAGGTGTGGAAATGGAGGTGGG-CGCTTTGCCATTGCAGAGACACCCACAGGCGAGCCTGTGCCA--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      188261 259 -    514179 GACCCTGTGGCACCAGCGTCTGCACTCAGGACTGGTCAGCCC-GGGACC-AGGGTGGGAGGAGGAAGGGGTTTGGGGGCTGAGGACCTGGCTCCAGCCCCACCTGGACACCGGGCGCCATGTGGTCT-TTCTAAATGTTAGGACCGCTGACCCTCAGGCAACAGTGGGTCAACCGGCAACGCGGGTCAGT--GGGAGGGGCAGGTGTGGAAATGGAGGTGGG-CACTTTGCCATTGCAGCGACACCCACAGGTGAGCCTGTGCCA--
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16004838 259 +  16417988 GTCCCCGTGGCACCACCGTCTGCACTCAGGACTGGTCAGCCAGGGGGCT-AGGGTGGGAGGGGCAAGGCGTTAGGGGACTGAGGACCTGGCTCCAGCCTTGCCTGGCCACTGGGCACCACCTGGCCT-TCCTAAACGTTAGGACCACTGACCCTCAGGCAGCCTCGGGCCCACCAGGAATGCGGGTCACT---GTGGGGGCGGGCATGGAAATGGAGCTGGG-TGCTTTGCCATTGCAGAGACACCCACAGCTGAGCCTGTGCCA--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       88039 261 +    298490 GTCCCCGTGGCACCACCGTCTGCACTCAGGACTGGTCAgcca-ggggct-agggtggcaggggcaaggcgttagggggctgaggacctggctccagCCCCATCTGGCCACTGGGCACCACCTGGCCT-TCCTAAACGTTAGGACTGCTGACCCTCAGGCAGCCTTGGGCCCACCTGGAATGTGGGTCACTGGGGGGGGGGCGGGCATGGAAATGGAGCTGGG-TGCTTTGCCATTGCAGAGACACCCACAGCTGAGCCTGTGCCA--
i cebCap1.NW_016108158v1   I 59 C 0
s aotNan1.NW_018503740v1    25419483 255 -  25620257 GTCCCCGTGGCACCACCGTCTGCACTCAGGACTGGTCAGCCA-GGGGCT-AGGGTGGGAGGGGCAAGAGGTTAGGGG-CTGAGGACCTGGCTCCAGCCCCGCCTGGCCACTGGGCGCCACCTGGCCT-TCCTAAACATTAGGACCGCTGACCCTCAGGCATCCTTGGGCCCACCGGGAATGTGGGTCACT----CGGGGGCGGGCATGGAGATGTAGCTGGG-TGCTTTGGCACTGCAGAGACACCCACAGCTGAA-CTGTGCCA--
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1865829 236 -   2165740 ATTCCCGCAGCACCAGTGTCTGTACTCAGGGAG-GTCAGCCC-ATGGCAGAGAGTGGGAGTCTGCAGGC-CCTGGAAGCTGAGGACCTATC-CCAGCCCTGCCTGGCCACCGG---CCCTGTGCTCT--CCTAAATGGCAGGACTGCTGACCCTCTGG---------------TGAGAGCACACGTGAGT--GGGAGGGGCAATAA--GGAAGGAAGCTGGGACACTTTCCCCCTGAAGAGCGGCCTGCAGGT-AGCAGGTGCCA--
i otoGar3.GL873745         C 0 I 15869
s canFam3.chr34             11718886 196 +  42124431 GCTCCGGTGGCTCCTCTGTGTGCACTTAGGACTGGCTGGCCA------C-AGTGTGTGCTGTGCG--------------TGAGGACCTGGTCCCAGCC-TGCCTGGCCGCTGCCAGCTGAGTGTCCC-TCCTAAATG--------GCTGATTCTTGGCTAGT----GTCCTACCGAGCACACAGGCC------------------------------------GGCTTTGCTATCGCAGAGACACCTATAAAGAAGCCTGTACCAGA
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203843777 1828 + 204313951 I

a score=284332.000000
s hg38.chr5_KI270793v1_alt     58026 30 +    126136 TGCCTGAGAGGCCCCAACAGACCAAGGGTC
s panTro5.chr5             181325296 30 - 181907262 TGCCTGAGAGGCCCCAACAGACCAAGGGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046077 30 - 183735486 TGCCTGAGAGGCCCCAACAGACCAAGGGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133330 30 +    698298 TGCCTGAGAGGCCCCAACAGACCAAGAGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120560573 30 - 121039945 TGCCTGAGGGGCCCCAACAGACCAAGTGTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179515486 30 - 180051392 TGCCTGAGGGGCCCCAACAGACCAAGGGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181249205 30 - 181584905 TGCCTGAGGGGCCCCAACAGACCAAGGGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251147 30 -   1764207 TGCCTGAGGGGCCCCAACAGACCAAGGGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      261048 30 -  16742782 TGCCTGAGGGGCCCCAACAGACCAAGGGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90564343 30 -  91010382 TGCCTGAGGGACCCCAACAGACCAAGGGTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      158434 30 -    438239 TGCCTGAGGGGCCCCAACAGACCAAGGGTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      188520 30 -    514179 TGCCTGAGGGGCCCCAACAGACCACGGGTC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16005097 30 +  16417988 TGCCTGAGGGGCCACAACAGACCGAGGGTC
i saiBol1.JH378155         C 0 I 815
s cebCap1.NW_016108158v1       88300 30 +    298490 TGCCTGAGGGGCCACAACAGACTGAGGGTC
i cebCap1.NW_016108158v1   C 0 I 840
s aotNan1.NW_018503740v1    25419738 30 -  25620257 CGCCTGAGGGGCCACAACAGACCGAGGGTC
i aotNan1.NW_018503740v1   C 0 I 899
s canFam3.chr34             11719082 30 +  42124431 GACATGGGGCATGTCAGCAGACAACAGGTC
i canFam3.chr34            C 0 I 2836
e otoGar3.GL873745           1866065 15869 -   2165740 I
e calJac3.chr2             203843777 1828 + 204313951 I

a score=7098.000000
s hg38.chr5_KI270793v1_alt     58056 1 +    126136 T
s panTro5.chr5             181325326 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046107 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133360 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120560603 1 - 121039945 T
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179515516 1 - 180051392 T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181249235 1 - 181584905 T
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251177 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      261078 1 -  16742782 T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90564373 1 -  91010382 T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      158464 1 -    438239 T
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      188550 1 -    514179 T
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203845605 1 + 204313951 T
i calJac3.chr2             I 1828 C 0
e aotNan1.NW_018503740v1    25419768 899 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       88330 840 +    298490 I
e saiBol1.JH378155          16005127 815 +  16417988 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=579067.000000
s hg38.chr5_KI270793v1_alt     58057 69 +    126136 GTTTGCAAAAGGGCTGCTGACATGATGGAGAGGAGAAACGGGAGAGCAGCAGGCGCAGGAGGCACCAGG
s panTro5.chr5             181325327 69 - 181907262 GTTTGCAAAAGGGCTGCTGACATGATGGAGAGGAGAAATGGGAGAGCTGCAggcacaggaggcaccagg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046108 69 - 183735486 GATTGCAAAAGGGCTGCTGACATGATGGAGAGGAGAAATGGGAGAGCAGCAGGCGCAGGAGGCACCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133361 68 +    698298 GTTTGCAAAAGGG-TGCTGACATGACGGAGAGGAGAAATGGGAGAGCTGCAGGCGCAGGAGGCACCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120560604 69 - 121039945 GTTTGCAAAAGGGCTGCTGAGATGATGGAGAGGACAAATGGGAGAGCCGCAGGTGCAGGAGGCACCAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179515517 69 - 180051392 ATTTGCAAAAGGGCTGCTGAGATGATGGAGAGGAGAAATGGGAGAGCCGcaggggcaggaggcaccagg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181249236 69 - 181584905 ATTTGCAAAAGGGCTGCTGAGATGATGGAGAGGAGAAATGGGAGAGCCGcaggggcaggaggcaccagg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251178 69 -   1764207 ATTTGCAAAAGGGCTGCTGAGATGATGGAGAGGAGAAATGGGAGAGCCGcaggggcaggaggcaccagg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      261079 69 -  16742782 ATTTGCAAAAGGGCTGCTGAGATGATGGAGAGGAGAAATGGGAGAGCCACAGGGGCAGGAGGCACCAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90564374 69 -  91010382 ATTTGCAAAAGGGGTGCTGAGATGATGGAGAGGAGAAATGAGAGAGCTgcaggagcaggaggcaccagg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      158465 69 -    438239 ATTTGCAAAAGGGCTGCTGAGATGATGGAGAGGAGAAATGGGAGAGCCACAGGGGCAGGAGGCACCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      188551 69 -    514179 ATTTGCAAAAGGGCTGCTGAGATGATGGAGAGGAGAAATGGGAGAGCCGCAGGGGCGGGAGGCACCAGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203845606 68 + 204313951 GTTTG-CAAAGGGCTGCTGAGATGATAGAGCGGAGAAATGGGAGAGCCATGGGAGCAGCAGGCACCAGG
i calJac3.chr2             C 0 I 4
s saiBol1.JH378155          16005942 69 +  16417988 GTTTGCCAAAGGGCTGCTGAGATGATAGAGcggagaaatggaagagccgccggagcaggaggcaccagg
i saiBol1.JH378155         I 815 I 4
s cebCap1.NW_016108158v1       89170 69 +    298490 GTTTGCAAAAGGGCTGCTGAGCTGATACAGTGGAGAACTGGGAGAGCCGCAGGAGCAGGAGGCACCAGG
i cebCap1.NW_016108158v1   I 840 I 64
e aotNan1.NW_018503740v1    25419768 899 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=391733.000000
s hg38.chr5_KI270793v1_alt     58126 63 +    126136 AGGGCCAGG-------GGCGGTAGGGCC-AGCTCACGGTGCTGAGGGGGCAGAAGGCCCCCCCGGGGTGAG-
s panTro5.chr5             181325396 70 - 181907262 agggccaggggccagcggcagtagggcc-agCTCACAGTGCTGAGGGAGCAGAAGGCCCCCCCAAGGTGAG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046177 63 - 183735486 AGGGCCAGG-------GGCGGTAAGGCC-AGCTCACGGTGCTGAGGGAGCAGAAGGCCCCCCCAAGGTGAG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133429 69 +    698298 AGGGCCAGGGGCCAGTGGCAGTAGGGCC-AGCTCATGGTGCTGAGGGAGCAGAAGGTCCCCCCAAGGTGA--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120560673 69 - 121039945 AGGGCCAGGGGCCAGCAGTGGTAGGGCC-GGCTCAtggtgctcagggagcagaagg-ccccccaaggtgag-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179515586 69 - 180051392 agggccaggggccagcagccatagggcc-GGCTCACGGCACTCAGGGAGCAGAAGG-CCCCCCAAGGTGAG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181249305 69 - 181584905 agggccaggggccagcagccatagggcc-GGCTCACGGCATTCAGGGAGCAGAAGG-CCCCCCAAGGTGAG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251247 69 -   1764207 agggccaggggccagcagccatagggcc-GGCTCACGGCACTCAGGGAGCAGAAGG-CCCCCCAAGGTGAG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      261148 69 -  16742782 AGGGCCAGGGGCCAGCAGCCGTAGGGCC-GGCTCACAGCACTCAGGGAGCAGAAGG-CCCCCCAAGGTGAG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90564443 69 -  91010382 agggccaggggccagcagCGGTAGGGCC-GGCTCACGGCACTCAGGGAGCAGAAGG-CCCCCCAAGGTGAG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      158534 69 -    438239 AGGGCCAGGGGCCAGCAGCCGTAGGGCC-GGCTCACAGCACTCAGGGAGCAGAAGG-CCCCCCAAGGTGAG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      188620 69 -    514179 AGGGCCAGGGGTCAGCAGCGGCAGGGCC-GGCTCATGGCACTCAGGGAGCAGAAGG-CCCCCCAAGGTGAG-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203845678 62 + 204313951 -------GGGGCCAGCAAGGGGAAGGCCGGGCTCAGGG--CTCAGGGAGCAGGAGG-CCCCCCCAGGGGACG
i calJac3.chr2             I 4 C 0
s saiBol1.JH378155          16006015 62 +  16417988 -------ggggccagcgcggggagggccgggctcaggg--ctcagggaacaggagg-cccccccaggggatg
i saiBol1.JH378155         I 4 C 0
e aotNan1.NW_018503740v1    25419768 899 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       89239 64 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=7800.000000
s hg38.chr5_KI270793v1_alt     58189 1 +    126136 G
s panTro5.chr5             181325466 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046240 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133498 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120560742 1 - 121039945 g
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179515655 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181249374 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251316 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      261217 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90564512 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      158603 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      188689 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       89303 1 +    298490 g
i cebCap1.NW_016108158v1   I 64 C 0
e aotNan1.NW_018503740v1    25419768 899 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e saiBol1.JH378155          16006077 0 +  16417988 C
e calJac3.chr2             203845740 0 + 204313951 C
e canFam3.chr34             11719112 2836 +  42124431 I

a score=2614198.000000
s hg38.chr5_KI270793v1_alt     58190 312 +    126136 GGGGTGCGGGAGCTGCCGCGATGTgtctgggctgtgaatgtggggcaaggggccgggcaggtggaggacaggacccctggaggggctcagagatctgagaa---------------------------------------gccaagttcaaggggggc--tctgtgcacattttgaagttgccagtaatc-------------gaggcacgggtcgatgtggag--agctgctttgagccaggaactgaaaccctagagagaggaggggatgccctgtcacggggatgcgggggcagtgtcgcgatgacccagggtttaggaaagaggaagggagggtggcctggaagtggtgaaagagcTTCGGGAT
s panTro5.chr5             181325467 351 - 181907262 GGGGTGCGGGAGCTGCCGCGATGTgtctggggtgtgaatgtggggcaaggggccgggcaggtggagggcaggacccctggaggggctcagagatctgagaagccaagttcaaggggggcttctgcgcacattttgaaattgccaagttcaaggggggc--tctgtgcacattttgaaattgccagtaatc-------------gaggcacgggtcgatgtggag--agctgctttgagccaggaactgaaaccctagagagaggagaggatgccctgtcacggggatgcgggggcagtgtcgtgatgacccaggatttaggaaagaggaagggagggtggcctggaagtggtgaaagagcTTCGAGAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046241 351 - 183735486 GGGGTGCGGGAGCTGCCACGATGTgtctggggtgtgaatgtagggcaaggggccgggcaggtggagggcaggacccctggaggggctcagagatctgagaagccaagttcaaggggggcttctgtgcacattttgaaattgccaagTTCAAGGGGGGC--tctgtgcacattttgaaattgccagtaatc-------------gaggcacgggtcgatgtggag--agctgctttgagccaggaactgaaaccctagagagaggagaggatgccctgtcacggggatgcgggggcagtgtcgtgatgacccaggatttaggaaagaggaagggagggtggcctggaagtggtgaaagagcTTCGGGAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133499 313 +    698298 GGGGTGCGGGAGCTGCCGCGATGTgtctggggtgtgaatgtggggcaaggggccgggcaggtggaggacaggacccctggaggggctcagagatctgagaa---------------------------------------gccaagttcaaggggggc-ttctgtgcacattttgaaattgccagtaatc-------------gaggcacgggtcgatgtggag--agctgctttgagccaggaactgaaaccctagagagaggaggggatgccctgtcacggggatgcgggggcagtgtcgcgatgacccagggtttaggaaagaggaagggagggtggcctggaagtggtgaaagagcTTCGGGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120560743 314 - 121039945 ggggtgcgggagctgctgcgatgtgtctggggtgtgaatatggggcaagggtctgggaaggtggaggacaggagccctggaggggctcagggacctgagaa---------------------------------------gccaagttcaagggggagtttctgtgcacattttgaaattgccagtaatt-------------gaggcaaaggtcaatgtggag--agctgctttgagccaggagctgaaaccctagagagaggaggggataccctgtcacggggacgcagaggcagcatcacgatgacctagggtttaggaaagaggaagggagggtggcctggaagtggtggaagagcTTCAGGAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179515656 324 - 180051392 CGGGTACAGGAGCTGCGGTGATGTgtctggggtgtgaataaggggccaggggccaggcaggtggaggacaggacccctggaggggctcagggacctgagaa---------------------------------------gccaagttcaaggggggc--tctgtgcacgttttgaaattgccagtaactgaggtgtgggtcggaggtgcgggtcgacgtggag--agctgctttgaggcaggagctgaaaccctagagcgaggaggggatgccccgtcacgggcgcgcgggggcggcttgacgatgacctagggtttagggaagaggaagggagggtggcttggaagtggtg-aagagcTTCGAGAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181249375 324 - 181584905 CGGGTACAGGAGCTGCGGTGATGTgtctggggtgtgaataaggggccaggggccaggcaggtggaggacaggacccctggaggggctcagggacctgagaa---------------------------------------gccaagttcaaggggggc--tctgtgcacgttttgaaattgccagtaactgaggtgtgggtcggaggtgcgggtcgacgtggag--agctgctttgaggcaggagctgaaaccctagagcgaggaggggatgccccgTCACGGGCGCGCGGGGGCGGCTTGACGATGACCTAGGGTTTAGGGAAGAGGAAGGGAGGGTGGCCTGGAAGTGGTG-AAGAGCTTCGAGAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251317 324 -   1764207 CGGGTACAGGAGCTGCGGTGATGTgtctggggtgtgaataaggggccaggggccaggcaggtggaggacaggacccctggaggggctcggggacctgagaa---------------------------------------gccaagttcaaggggggc--tctgtgcacgttttgaaattgccagtaactgaggtgtgggtcggaggtgcgggtcgacgtggag--agctgctttgaggcaggagctgaaaccctagagcgaggaggggatgccccgtcacgggcgcgcgggggcggcttgacgatgacctagggtttagggaagaggaagggagggtggcctggaagtggtg-aagagcTTCGAGAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      261218 324 -  16742782 CGGGTACAGGAGCTGCGGTGATGTGTCTGGGGTGTGAATAAGGGGCCAGGGGCCAGGCAGGTGGAGGACAGGACCCCTGGAGGGGCTCGGGGACCTGAGAA---------------------------------------GCCAAGTTCCAGGGGGGC--TCTGTGCACGTTTTGAAATTGCCAGTAACTGAGGTGTGGGTCGGAGGTGCGGGTCGACGTGGAG--AGCTGCTTTGAGGCAGGAGCTGAAACCCTAGAGCGAGGAGGGGATGCCCCGTCACGGGCGCGCGGGGGCGGCTTGACGATGACCTAGGGTTTAGGGAAGAGGAAGGGAGGGTGGCCTGGAAGTGGTG-AAGAGCTTCGAGAT
i cerAty1.NW_012009470v1   C 0 I 206
s chlSab2.chr4              90564513 324 -  91010382 CGGGTACAGGAGCTGCTGTGATGTgtctgggatgtgaatatggggccaggggccaggcaggtggaggacaggacccctggaggggctcggggacctgagaa---------------------------------------gccaagttcaaggggggc--tctgtgcacgttttgaaattgccagtaactgaggtgtgggtcagaggtgtgggtcgacgtggag--agctgctttgaggcaggagctgaaaccctagagcgacgaggggATGCCCCATCACGGGGGCGTGGGACCAGCTTGACGATGACCTAGCGTTTAGGGAAGAGGAAGGGAGGGTGGCCTGGAAGTGGTG-AAGAGCTTCAGGAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      158604 324 -    438239 CGGGTACAGGAGCTGCGGTGATGTGTCTGGGGTGTGAATAAGGGGCCAGGGGCCAGGCAGGTGGAGGACAGGACCCCTGGAGGGGCTGGGAGACCTGAGAA---------------------------------------GTCAACTTCAAGGGGGGC--TCTGTGCACGTTTTGAAATTGCCAGTAACTGAGGTGTGGGTCGGAGGTGCGGGTCGACGTGGAG--AGCTGCTTTGAGGCAGGAGCTGAAACCCTAGAGCGAGGAGGGGATGCCCCGTCATGGGCGCGCGGGGGCGGCTTGACGATGACCTAGGGTTTAGGGAAGAGGAAGGGAGGGTGGCCTGGAAGTGGTG-AAGAGCTTCGAGAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      188690 310 -    514179 CGGGTACAGGAGCTGCTGTGACGTgtctggggtgtgaatacggggccaggggccaggcaggtggaggacaggatccctggaggggctcggggacctgagaa---------------------------------------gccaagttggaggggggc--tctgtgcacattttgaaattgccagtaact-------------gaggtgcgggtctacgtggag--agcggctttgaggcaggagctgaaaccctagagtgaggaggcgatgccccgtcacgggggcgcgggggtggcttgacgatgacctagggtttggggaagaggaa-ggagggtggcctggaagtggtg-aagagcTTCGGGAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203845740 306 + 204313951 -GGGTGTGGGAGCTGCAGCAATGggtctgggatgtgaatgtggggtaaggggcggggcaggtggaagacaggatccctgga-gggctcaatgacctcagaa---------------------------------------gccagggttcgagggttc--tc--tgcacattctgaaattgccaataata-------------gaggcagaggttgacgtggagacagctactctgagccaggagctgaaatcctagagagagtaggggatggcctgtcacagggt----gaggtggcgtcacaatgacccggggtttaggaaagaggaggggagggtgccccggaagtggtggaagagcTTCCGGAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16006077 306 +  16417988 -gggggtgggagctgcagcaatgggtctggggtgtgaatgtggggtaaggggcagggcaggtggaagacggcacccctgga-gggctcaataacctcagaa---------------------------------------gccagggttcgagggggc--tc--tgcgcattctgaaagtgccagtaatc-------------gaggcagaggttgacgtggagacagctgctctgaacagggagctgaaatcctagagggaggaggggagggcctgtcacagggc----ggggtgctgtcacaatgacccagggtttaggaaagaggaggggagggtgccctggaagtggtggaagagcTTCCGGAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       89304 306 +    298490 ggggggcaggagctgcagcaatgggcctggggtgtgaatgtggggtaaggggcggggcaggtggaagacgggacccctgga-gggctcaatgacctcagaa---------------------------------------gccagggttcgagggggc--tc--tgcgcattctgaaattgccaataatc-------------gaggcagaggctgatgtggagacagctgctctgagccaggagctgaaatcctagagagaggaggggaggGCCTGCCACGGGGC----AGGGCGGTGTCACAATGACCCGGGGTTTAGGGGCGAGGAGGGGAGGGTGCCCT-GAAGTGGTGAAAGAGCTTCTGGAT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25420667 307 -  25620257 ggggtgcaggagctgcagcaacgggtctggggtgtgaatgtggggtaaggggtggggcaggtggaacacgggacccctgga-gggctcaatgacctcagaa---------------------------------------gccggggttcgagggggc--tc--tgcgtgttctgaaattgccaataatc-------------gaggcagaggttgccgtggagacagctgctccgagccaggagctgaaatcctagagagaggaggcgatggcctgtcacagggc----ggggtggcatcaaaatgaccccgggtttaggaaagaggaggggagggtgccctggaagtgggggaagagcTTCCAGAT
i aotNan1.NW_018503740v1   I 899 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=670938.000000
s hg38.chr5_KI270793v1_alt     58502 92 +    126136 AGGGAAAGGGGGAAAGGCTGTGGCTTCCAGGAGGGCTGCAGCCAGAGACAACAGCTTCAGGGCTGGGTGCAGATAGGAGGCCCCAGGGCTCT
s panTro5.chr5             181325818 92 - 181907262 AGGGAAAGGGGGAAAGGCTGTGGCTTCCAGGAGGGCTGCAGCCAGAGACAACAGCTTCAGGGCTGGGTGCAGATAGGAGGCCCCGGGGCTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046592 92 - 183735486 AGGGAAAGGGGGAAAGGCTGTGGCTTCCAGGAGGGCTGCAGCCAGAGACAACAGCTTCAGGGCTGGGTGCAGATAGGAGGCCCCGGGGCTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133812 92 +    698298 AGGGAAAGGGGGAAAGGCTGTGGCTTCCAGGAGAGCTGCAGCCAGAGACAACAGCTTCAGGGCTGGGTGCAGATAGGAGGCCCCAAGGCTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561057 92 - 121039945 AGGGAAAGGGGGAAAGGCTGTGGCTTCCAGGAGGGCTGCAGCCAGAGACAACGGCTTCAGGGCTGGGTGCAGATAGGAGGCCCCAGGGCTCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179515980 91 - 180051392 -GGGGAACGGGGAAAGGCTGTGGCTTCCAGGAGCGTTGCAGCCAGAGGCAACGGCTTCAGGGCTGGGTGCGGTTAGGAGGCCCCGGGACTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181249699 91 - 181584905 -GGGGAACAGGGAAAGGCTGTGGCTTCCAGGAGGGTTGCAGCCAGAGACAACGGCTTCAGGGCTGGGTGCGGTTAGGAGGCCCCGGGACTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251641 91 -   1764207 -GGGGAACAGGGAAAGGCTGTGGCTTCCAGGAGGGTTGCAGCCAGAGACAACGGCTTCAGGGCTGGGTGCGGTTAGGAGGCCCCGGGACTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      261748 87 -  16742782 -AGGGAACGGGG-AAGGCTGTGGCTTCCAGGAGG---GCAGCCAGAGACAACGGCTTCAGGGCTGGGTGCGGTTAGGAGGCCCCGGGACTCC
i cerAty1.NW_012009470v1   I 206 C 0
s chlSab2.chr4              90564837 91 -  91010382 -AGGGAACCGGGAAAGGCTGTGGCTTCCAGGAGGGCTGCAGCCAGAGACAACGGCTTCAGGGCTGGGTGCAGTTAGGAGGCCCCAGGACTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      158928 91 -    438239 -AGGGAACGGGGAAAGGCTGTGGCTTCCAGGAGGGCTGCAGCCAGAGACAACGGCTTCAGGGCTGGGTGTGGTTAGGAAGCCCCGGGACTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189000 92 -    514179 AGGGAAGTGGGGAAAGGCTGTGGCTTCCAGGAGGGCTGCAGCCAGAGACGACGGCTTCAGGGCTGGGTGCAGTTAGGAAGCCTCGGGACTCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846046 65 + 204313951 C--------CAGATAGGCTGGG------------------GCCAGAGACAAAGGTTTCGGGGCTGCATGCAGACAGCGGGCC-CAGGGCTCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16006383 73 +  16417988 CGGGAAGCGGGGATAGGCTGTG------------------GCCAGGGACGAAGGCTTCCAGGCTGGGTGCAGATAGGGGGCC-CAGGGCTCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       89610 72 +    298490 CGGGAAGAGGGGACAGGCTGTG------------------GCCGGAGACAAAGGCTTCAGGGCTGGGGACAGATAG-GGGCC-CAGGGCTCT
i cebCap1.NW_016108158v1   C 0 I 47
s aotNan1.NW_018503740v1    25420974 73 -  25620257 AGGGAAGAGGGGATAGGCTGTG------------------GCCAGAGACAAAGGCTTCGGGGCTGGGTGCAGATAGGGGGCC-CAGGGCTCC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=352342.000000
s hg38.chr5_KI270793v1_alt     58594 45 +    126136 GCTGTGAGTGCAGGATGGTGGGG------CTTGCCCGAGTACAGCTCTCTC
s panTro5.chr5             181325910 51 - 181907262 GCTGTGAGTGGAGGATGGTGGGGCTCATCCTTGCCCGAGTACAGCCCTCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046684 51 - 183735486 GCTGTGAGTGGAGGATGGTGGGGCTCATCCTTGCCCGAGTACAGCCCTCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133904 51 +    698298 GCTGTGAGTGCAGGATGGTGGGGCTCACCCTTGCCCAAGTACAGCCCTCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561149 51 - 121039945 GCTGTGAGTGGAGGATGGTGGGGCGCACTCTTGCCCAAGTACAGCCCTCTC
i nomLeu3.chr6             C 0 I 3
s rheMac8.chr6             179516071 51 - 180051392 ACTGTGAGAGGAGGATGGTGGGGCACACCCATGCTCAAGTACAGCCCTCTC
i rheMac8.chr6             C 0 I 3
s macFas5.chr6             181249790 51 - 181584905 ACTGTGAGAGGAGGATGGTGGGGCACACCCATGCTCAAGTACAGCCCTCTC
i macFas5.chr6             C 0 I 3
s macNem1.NW_012012389v1      251732 51 -   1764207 ACTGTGAGAGGAGGATGGTGGGGCACACCCATGCTCAAGTACAGCCCTCTC
i macNem1.NW_012012389v1   C 0 I 3
s cerAty1.NW_012009470v1      261835 51 -  16742782 ACTGTGAGAGGAGGATGGTGGGGCACACTCATGCTCAAGTACAGCCCTCTC
i cerAty1.NW_012009470v1   C 0 I 3
s chlSab2.chr4              90564928 51 -  91010382 GCTGTGAGAGGAGGATGGTGGGGCACACCCATGCTCAAGTACAGCCTTCTC
i chlSab2.chr4             C 0 I 3
s manLeu1.NW_012110441v1      159019 51 -    438239 ACTGTGAGAGGAGGATGGTGGGGCACACCCATGCTCAAGTACAGCCCTCTC
i manLeu1.NW_012110441v1   C 0 I 3
s colAng1.NW_012118799v1      189092 51 -    514179 ACTGTGAGTGGAGGATGGTGGGGCACACCCATGCTCAAGTACAGCCCTCTC
i colAng1.NW_012118799v1   C 0 I 3
s calJac3.chr2             203846111 45 + 204313951 TCTGTGGATGGAGGAT-----GGCACACCCTTGC-CAAGTACAGCTCTGTC
i calJac3.chr2             C 0 I 3
s saiBol1.JH378155          16006456 45 +  16417988 TCTGTGCATGGGGGAT-----GGCACACCCTTGC-CAAGTACAGCTCTCTC
i saiBol1.JH378155         C 0 I 3
s aotNan1.NW_018503740v1    25421047 45 -  25620257 TCTGTGGATGGAGGAT-----GGCACACCCTTGC-CAAGCACAGCTCTCTC
i aotNan1.NW_018503740v1   C 0 I 3
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       89682 47 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=482209.000000
s hg38.chr5_KI270793v1_alt     58639 54 +    126136 GACCCCGAAAGACAGGCGGAAGACCCAGGGGGAAAAGGCCCCAGGAACCCCTGA
s panTro5.chr5             181325961 54 - 181907262 GACCCTGTAAGACAGGCGGAAGACCCAGGGGGAAAAGGCCCCAGGAACCCCTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046735 54 - 183735486 GACCCTGTAAGACAGGTGGAAGACCCAGGGGGAAAAGGCCCCAGGAACCCCTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      133955 54 +    698298 GACCCCGTAAGACAGGCGGAAGACCCAGGGGGAAAAGGCCCCAGGAACCCCTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561203 53 - 121039945 GACCCCGCATGACAGGCAGAAGACCC-TGGGGAAAAGGCCCCAGGAACCCCTGA
i nomLeu3.chr6             I 3 C 0
s rheMac8.chr6             179516125 54 - 180051392 GACCCCGTAAGACAGGTGGAAGACTCACAGGGAAAAGGCCCCAGGAATCCCTGA
i rheMac8.chr6             I 3 C 0
s macFas5.chr6             181249844 54 - 181584905 GACCCCGTAAGACAGGTGGAAGACTCACAGGGAAAAGGCCCCAGGAATCCCTGA
i macFas5.chr6             I 3 C 0
s macNem1.NW_012012389v1      251786 54 -   1764207 GTCCCCGTAAGACAGGTGGAAGACTCACAGGGAAAAGGCCCCAGGAATCCCTGA
i macNem1.NW_012012389v1   I 3 C 0
s cerAty1.NW_012009470v1      261889 54 -  16742782 GACCCCGTAAGACAGGTGGAAGACCCAGGGGGAAAAGGCCCCAGGAATCCCTGA
i cerAty1.NW_012009470v1   I 3 C 0
s chlSab2.chr4              90564982 54 -  91010382 GACCCCATAAGATAGGTGGAAGACCCACGGGGAAAAGGCCCCAGGAATCCCTGA
i chlSab2.chr4             I 3 C 0
s manLeu1.NW_012110441v1      159073 54 -    438239 GACCCCGTAAGACAGGTGGAAGACCCAGGGGGAAAAGGCCCCAGGAATCCCTGA
i manLeu1.NW_012110441v1   I 3 C 0
s colAng1.NW_012118799v1      189146 53 -    514179 GACCCCGTAAGACAGGTGGAAAACCCG-GGGGAAAAGGCCCCAGGAATCCCTGA
i colAng1.NW_012118799v1   I 3 C 0
s calJac3.chr2             203846159 52 + 204313951 GACCCTGTACGATGGGCAGAAGACCC-TGGGGGAAAGGCCCCAGGAA-CCCTGA
i calJac3.chr2             I 3 C 0
s saiBol1.JH378155          16006504 53 +  16417988 GACCCTGTATGACGGGCAGAAGACCC-TGGGGGAAAGGCCCCAGGAACCCCTGA
i saiBol1.JH378155         I 3 C 0
s cebCap1.NW_016108158v1       89729 53 +    298490 GACCCTGTATGACGGGCAGAAGACAC-TGGGGGAAAGGCCCCAGGAACCCCTGA
i cebCap1.NW_016108158v1   I 47 I 109
s aotNan1.NW_018503740v1    25421095 53 -  25620257 GACCCTGTATGACGGGCAGAAGACCC-TGGGGGAAAGGCCCCAGGAACCCCTGA
i aotNan1.NW_018503740v1   I 3 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=5155.000000
s hg38.chr5_KI270793v1_alt     58693 3 +    126136 AC-C
s panTro5.chr5             181326015 3 - 181907262 AC-C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046789 3 - 183735486 AC-C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134009 3 +    698298 AC-C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561256 3 - 121039945 AC-C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516179 3 - 180051392 AC-C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181249898 3 - 181584905 AC-C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251840 3 -   1764207 AC-C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      261943 3 -  16742782 AC-C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565036 3 -  91010382 AC-C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159127 3 -    438239 AC-C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189199 3 -    514179 AC-C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846211 2 + 204313951 AC--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16006557 2 +  16417988 AC--
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25421148 3 -  25620257 ACC-
i aotNan1.NW_018503740v1   C 0 I 123
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       89782 109 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=638524.000000
s hg38.chr5_KI270793v1_alt     58696 103 +    126136 ATTGCTACGGGCGTGGCTGTTCAGACAACAGCAACCGCGGGAGGGGAGCGTAGGGCTCTGCCTGCAGCCACGCTCTCTCCGGGATGTACTCTCCAGGGGTCCA---------------------
s panTro5.chr5             181326018 103 - 181907262 ATTGCTACAGGCGCGGCTGTTCAGACAACAGCAACCGCGGGAGGGGAGTGCAGGGCTCTGCCTGCAGCCACGCTCTCTCCGGGATGTACTCTCCAGGGGTCCA---------------------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046792 103 - 183735486 ATTGCTACAGGCGCGGCTGTTCAGACAACAGCAACCGCGGGAGGGGAGTGCAGGGCTCTGCCTGCAGCCACGCTCTCTCCGGGATGTACTCTCCAGGGGTCCA---------------------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134012 103 +    698298 ATTGCTACCGGCGCGGCTGTTCAGACAACAGCAACCGTGGGAGGGGAGCGTAGGGCTCTGCCTGCAGCCACGCTCTCTCCAGGATGTACTCTCCAGGGGTCCA---------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561259 103 - 121039945 ATTGCTACGGGTGCGGCCATTCAGACAACAGCAACCACAGGAGAGGAGCGCAGGGGTCTGCCTGAAGCCATGCTCTCTCTGGGATGGACTCTCCAGGGGTCCA---------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516182 103 - 180051392 ATGGCTACGGGTGCGGCTGTTCAGACAACAGCAACTGCGGGAGGGGAGCACAAGGCTCCACCTGCAGCCATGCTGTCTCTGGGATGGACTCTCTGGGGGTCTG---------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181249901 103 - 181584905 ATTGCTACGGGTGCGGCTGTTCAGACAACAGCAACTGCGGGAGGGGAGCACAAGGCTCCACCTGCAGCCATGCTGTCTCTGGGATGGACTCTCTGGGGGTCTG---------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251843 103 -   1764207 ATTGCTACGGGTGCGGCTGTTCAGACAACAGCAACTGCGGGAGGGGAGCACAAGGCTCCACCTGCAGCCATGCTGTCTCTGGGATGGACTCTCTGGGGGTCTG---------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      261946 103 -  16742782 ATTGCTACGGGTGCGGCTGTTCAGACAACAGCAACCGCGGGAGGGGAGCACAAGGCTCCACCTGCAGCCGTGCTGTCTCTGGGATGGACTCTCCGGGGCTCCG---------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565039 103 -  91010382 ATTGCTACGGGTGCGGCTGTTCAGACAACAGCAACTGCGGGAGGGGAGCACAAGGCTCCACCTGCAGCCATGCTGTCTCTGGGATGGACTCTCTGGGGGTCCG---------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159130 103 -    438239 ATTGCTACGGGTGCGGCTGTTCAGACAACAGCAACCGCGGGAGGGGAGCACAAGGCTCCACCTGCAGCCATGCTGTCTCTGGGATGGACTCTCCGGGGGTCCG---------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189202 103 -    514179 ATTGCTACGGGTGCGGCTGTTCAGACAACAGCAACCGCGGGAGGGGAGCACAAGGCTCCGCCTGCAGCCATGCCGTCTCTGGGATGGACTCTCCGGGGGTCCA---------------------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846213 107 + 204313951 -----------TGTGGCTTTTCAGATAACAGCAGCCTCAGG------GTTCAGGGTTCCACCTGCGGCCACGTCATCCCCAGGTTGGACTCTCCAGGGGTCTCTGCAGGAACCTGCATCCTCCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16006559 107 +  16417988 -----------CATGGCTGTTCAGATAGCAGCAGCCTCAGG------GTTCAGGGTTCCACCTGCGGCCGCGCCCTCCCCAGGCCGGACTCTCCAGGGGTCCCTGCAGGAACCCGCGTCCTCCT
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25421151 123 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       89782 109 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=133655.000000
s hg38.chr5_KI270793v1_alt     58799 18 +    126136 GCAGGGCTGCAGAGGCCT
s panTro5.chr5             181326121 18 - 181907262 GCAGGGCTGCAGAGGCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046895 18 - 183735486 GCAGGGCTGCAGAGGCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134115 18 +    698298 GCAGGGCTGCAGAGGCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561362 18 - 121039945 GCAGGGTTGCAGAGGCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516285 18 - 180051392 GCAGGGCTTCAGAGGCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250004 18 - 181584905 GCAGGGCTGCAGAGGCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251946 18 -   1764207 GCAGGGCTGCAGAGGCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262049 18 -  16742782 GCAGGGCTGCAGAGGCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565142 18 -  91010382 GCAGGGCTGCAGAGGCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159233 18 -    438239 GCAGGGCCGCAGAGGCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189305 18 -    514179 GCAGGGCTGCAGAGGCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846320  4 + 204313951 ACAG--------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16006666 18 +  16417988 GCAGGGCTGCAGAGGTTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       89891 18 +    298490 GCAGGGCCACAGAGGTTC
i cebCap1.NW_016108158v1   I 109 C 0
e aotNan1.NW_018503740v1    25421151 123 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=1131799.000000
s hg38.chr5_KI270793v1_alt     58817 121 +    126136 CCTGGCTGCTGGCGGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCAGAGAGGCAGCCCCTCAGCCACAGGCGAGTGTTGCAGGGGTGCAGGCCCACACGGGCGGCAGCTGGAGGGC
s panTro5.chr5             181326139 121 - 181907262 CCTGGCTGCTGGCGGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCGGGGAGGCAGCCCCTCAGCCACAGGCGAGCGTTGCGGGGTTGCAGGCCCACACGGGCGGCAGCTGGAGGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183046913 121 - 183735486 CCTGGCTGCTGGCGGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCGGGGAGGCAGCCCCTCAGCCACAGGCGAGCGTTGCGGGGTTGCAGGCCCACACGGGCGGCAGCTGGAGGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134133 121 +    698298 CCTGGCTGCTGGTGGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCGGGGAGGCAGCCCCTCAGCCACAGGCGAGTGTTGCGGGGGTGCAGGCCCACACGGGCGGCAGCTGGAGGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561380 121 - 121039945 CCTGGCTGCAGGCAGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCAGGGAGGCAGCCCCTCAGCCGTAGGCGAGCTTTGCGGGGGTGCAGGCCCACATGGGCGGCAGCTGGAGGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516303 121 - 180051392 CCTGGCTGCTGGCAGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCGGGGAGGCAGCCCCTCAGCCACAGGCGAGCGTTGCTGGGGTGCAGGCCTGCAGGGGCGGTGGCTGGAGGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250022 121 - 181584905 CCTGGCTGCTGGCAGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCGGGGAGGCAGCCCCTCAGCCACAGGCGAGCGTTGCTGGGGTGCAGGCCTGCAGGGGCGGTGGCTGGAGGGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      251964 121 -   1764207 CCTGGCTGCTGGCAGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCGGGGAGGCAGCCCCTCAGCCACAGGCGAGCGTTGCTGGGGTGCAGGCCTGCAGGGGCGGCGGCTGGAGGGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262067 121 -  16742782 CCTGGCTGCTGGCGGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCGGGAAGGCAGCGCCTCAGCCACAGGCGAGTGTTGCTGGGGTGCAGGCCTGCAGGGGCGGCGGCTGGAGGGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565160 121 -  91010382 CCTGGCTGCTGGCAGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCGGGGAGGCAGCCCCTCAGCCACAGGCGAGCGTCGCTGGGGTGCAAGCCTGCAGGGGCGGCGGCTGGAGGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159251 121 -    438239 CCTGGCTGCTGGCAGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTTGGGAAGGCAGCGCCTCAGCCACAGGCGAGCGTTGCTGCGGTGCAGGCCTGCAGGGGCGGCGGCTGGAGGGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189323 121 -    514179 CCTGGCTGCTGGCAGAAGATAGCTGCAGCAACCTCGCTCCCAGGCCCCTCGGGGAGGCAGCCCCTCAGCCATAGGCAAGCGTTGCTGGGGTGCAGGCCTGCAGGGGCGGTGGCTGGAGGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846324 116 + 204313951 ---GGCAGCTGCGGGAGGATGGCTGCAGTGACCTCGCTCCCAGGCCCCTCGGGGAAGCAGACCCTCAGCCACAGGTGAGCTCTGC-AGGGTGCAGGCC-GCTCGGGCAGTGGCTGGAAGGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16006684 119 +  16417988 CC-GGCTGCTGGGGGAGGATGGCTGCAGTGACCTCAGTCCCAGGCCCCTCGGGGCAGCAGACCCCCAGCCACAGGTGAGCTTTGC-AGGGTGCAGGCCTGCTCAGGCGGCGGCCGGAGGGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       89909 120 +    298490 CCTGGCTGCTGGGGGAGGGTGGCTGCAGTGAGCTCGCTCCCAGGCCCCTCAGGGAAGCAGACCCTCAGCCACAGGTGAGCTTTGC-AGGGTGCAGGCCCGCTCGGGCGGTGGCTGGAGGGC
i cebCap1.NW_016108158v1   C 0 I 136
s aotNan1.NW_018503740v1    25421274 119 -  25620257 CCTGGCTGCCGGGGGAGGAT-GCTGCAGTGACCTCACTCCCAGGCCCCTCGGGGAAGCAGACCCTCAGCCACAGGTGAGCTTTGC-AGGGTGCAGGCCCACTCGGGCGGCGGCTGGAGGGC
i aotNan1.NW_018503740v1   I 123 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=143104.000000
s hg38.chr5_KI270793v1_alt     58938 19 +    126136 AGGTGGGCTGGGCAGGCAC
s panTro5.chr5             181326260 19 - 181907262 AGGTGGGCTGGGCAGGCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047034 19 - 183735486 AGGTGGGCTGGGCAGGCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134254 19 +    698298 AGGTGGGCTGGGCAGGCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561501 19 - 121039945 AGGTAGGCTGGGCAGGCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516424 19 - 180051392 AGGTGGGCCAGGTGGGCAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250143 19 - 181584905 AGGTGGGCCAGGTGGGCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252085 19 -   1764207 AGGTGGGCCAGGCGGGCAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262188 19 -  16742782 AGGTGGGCCAGGCGGGCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565281 19 -  91010382 AGGTGGGCCAGGCAGGCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159372 19 -    438239 AGGTGGGCCAGGCGGGCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189444 19 -    514179 AGGTGGGCCAGGCGGGCAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846440 18 + 204313951 AGCGTGGCTGGGTGG-CAC
i calJac3.chr2             C 0 I 4
s saiBol1.JH378155          16006803 19 +  16417988 AGGTTGGCTGGGTGGTCAC
i saiBol1.JH378155         C 0 I 4
s aotNan1.NW_018503740v1    25421393 19 -  25620257 AGGTTGGCTGGGCGGGCAC
i aotNan1.NW_018503740v1   C 0 I 164
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90029 136 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=792363.000000
s hg38.chr5_KI270793v1_alt     58957 123 +    126136 TGGTGCTGTCTCCTGGCTTCCCTGAGCCATGGAGCCATGTCCTGCCTCCTGCTAGCGGCCGTGGGGGCCATGGGTTCCTGTTTATGGCCTGTTGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
s panTro5.chr5             181326279 114 - 181907262 TGGTGATGTCTCCTGGCTTCCCTGAGCCATGGAGCCATGTCCTGCCTCCTGCTAGTGGCCG---------TGGGTTCCTGTTTATGGCCTGTTGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047053 114 - 183735486 TGGTGATGTCTCCTGGCTTCCCTGAGCCATGGAGCCATGTCCTGCCTCCTGCTAGCGGCCG---------TGGGTTCCTGTTTATGGCCTGTTGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134273 123 +    698298 TGGTGCTGTCTCCTGGCTTCCCTGAGCCATGGAGGCATGTCCTGCCTCCTGCTAGCGGCCGTGGGGGCCGTGGGTTCCTGTTTATGGCCTGTTGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561520 114 - 121039945 TGGTGCTGTCTCCTGGCTTCCCTGAGCCATGGAGCCATGTCCTGCCTCCTCCTAGCGGCTG---------TGGGTTCCTGTTTATGGCCTGTTGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516443 114 - 180051392 CGGTGCTGTCTCCTGGCTTCCCTGAGCCATGGAGCCATGTCCTGCCTCCTGCCAGCCGCTG---------TGGGTACCTGTTTATGGCCTACGGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250162 114 - 181584905 CGGTGCTGTCTCCTGGCTTCCCTGAGCCATGGAGCCATGTCCTGCCTCCTGCCAGCCGCTG---------TGGGTTCCTGTTTATGGCCTACGGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252104 114 -   1764207 CGGTGCTGTCTCCTGGCTTCCCTGAGCCATGGAGCCATGTCCTGCCTCCTGCCAGCCGCTG---------TGGGTTCCTGTTTATGGCCTACGGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262207 114 -  16742782 CGGTGCTGTCTCCTGGCTTCCCTGAGCCATGGAGCCATGTCCTGCCTCCTGCCAGCGGCTG---------TGGGTTCCTGTTTATGGCCTACGGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565300 114 -  91010382 CGGTGCTGTCTCCTGGCTTCCCTGAGCCATGGAGCCATGTCCTGCCTCCTGCCAGCGGCTG---------TGGGTTCCTGTTTATGGCCTATGGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159391 114 -    438239 CGGTGCTGTCTCCTGGCTTCCCTGAGCCATGGAGCCATGTCCTGCCTCCTGCCAGTGGCTG---------TGGGTTCCTGTTTATGGCCTACGGTGTGTGCGAGGGTCACTAGCAGCTGGGGT------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189463 114 -    514179 CGGTGCTGTCTCCTGGTTTCCCTGAGCCGTGGAGCCATGTCCTGCCTCCTGCCAGCGGCTG---------TGGGTTCCTGTTTATGGCCTATGGTGTTTGCAAGGGTCACTAGCAGCTGGGGT------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846462 114 + 204313951 CAGCACTGCCTTATGGCTTCCCTGAGT------GCCATTTCCGGCCTCCCTCGAGTGGCTG---------TGGGTTCCCATCCATGGCCTGCTGCGTGTGCCAGGGTCGTTAGCAGCTGGGTTGCTGGG
i calJac3.chr2             I 4 C 0
s saiBol1.JH378155          16006826 114 +  16417988 CGGCACTGCCTTATGGCTTCCCTGAGT------ACCATTTCTGGCCTCCCTCGAGTGGCTG---------TGGGTTCCCGTCCGTGGCCTGTTGCGTGTGCCAGGGTCGTTAGCAGCTGGGTCGCTGGG
i saiBol1.JH378155         I 4 C 0
e aotNan1.NW_018503740v1    25421412 164 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90029 136 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=414502.000000
s hg38.chr5_KI270793v1_alt     59080 48 +    126136 CGCTGGACG-------TGTGAGCCTTGGACCTGAGTAGATCCTGCCCAGCTCAAG
s panTro5.chr5             181326393 55 - 181907262 CGCTGGACGCTGGGCATGTGAGCCTTGGACCTTAGTAGATCCTGCCCAGCTCAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047167 55 - 183735486 CGCTGGACGCTGGGCATGTGAGCCTTGGACCTTAGTAGATCCTGCCCAGCTCAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134396 55 +    698298 CGCTGGACGCTGGGTGTGTGAGCCTTGGACCTGAGTAGATCCTGCCCAGCTCAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561634 55 - 121039945 CGCTGGACGCTGGGGGTGTGAGACTTGGACCTGAGTAGATCCTGCCCAGCCCGAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516557 55 - 180051392 CGCTGGACACTGGGCGTGTGAGCCTTGGACCTGAGTAGATCCTGCCCAGCTTGAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250276 55 - 181584905 CGCTGGACACTGGGCGTGTGAGCCTTGGACCTGAGTAGATCCTGCCCAGCTCGAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252218 55 -   1764207 CGCTGGACACTGGGCGTGTGAGCCTTGGACCTGAGTAGATCCTGCCCAGCTCGAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262321 55 -  16742782 CGCTGGACGCTGGGCGTGTGAGCCTTGGACCTGAGTAGATCCTGCCCAGCTCGAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565414 55 -  91010382 CGCTGGATGCTGGGCGTGTGAGCCTTGGACCTGAGTAGATCCTGCCGAGCTTGAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159505 55 -    438239 CGCTGGACGCTGGGCGTGTGAGCCTTGGACCTGAGTAGATCCTGCCCAGCTCGAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189577 55 -    514179 CGCTGGACGCCGGGCGTGTGAGCCTTGGACCTGAGTAGATCCTGCCCAGCTCGAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846576 47 + 204313951 -------CGCTGGGCATGTGAGCCTTGGACCTGTGTAGATCCCGCCCAGCGCGA-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16006940 47 +  16417988 -------CGCTGGGCATATGAGCGTTGGACCTGCGTAGATCCCGCCCAGTGTGA-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       90165 47 +    298490 -------CGCTGGGCATGTGAGCCTTGGACTTGCGTAGATCCCACCCAGCGTGA-
i cebCap1.NW_016108158v1   I 136 C 0
e aotNan1.NW_018503740v1    25421412 164 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=436655.000000
s hg38.chr5_KI270793v1_alt     59128 48 +    126136 GGGCATCACCGATTCCCGTCCTCAGTGTGGGAGCCTCCACACCACGCT
s panTro5.chr5             181326448 48 - 181907262 GGGCATCACCGATTCCCGTCCTCAGTGTGGGAGCCTCCACACCACGCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047222 48 - 183735486 GGGCATCACCGATTCCCGTCCTCAGTGTGGGAGCCTCCACACCACGCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134451 48 +    698298 GGGCATCACCGATTCCCGTCCTCAGTGTGGGAGCCTCCACACCACGCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561689 48 - 121039945 GGGCATCACCGATTCCCATCCTCAGTGTGGGAGCCTCCACAGCATGCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516612 48 - 180051392 GAGGGTCACCGATTCCCGTCCTCGGTGTGAGAGCCTCCACGCCAGGCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250331 48 - 181584905 GAGGGTCACCGATTCCCGTCCTCGGTGTGAGAGCCTCCACGCCAGGCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252273 48 -   1764207 GAGGGTCACCGATTCCCGTCCTCGGTGTGAGAGCCTCCACGCCAGGCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262376 48 -  16742782 GAGGGTCACCGATTCCCGTCCTCGGTGTGGGAGCCTCCACGCCAGGCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565469 48 -  91010382 GAGGGTCACCGATTTCCGTCCTCGGTGTGGGAGCCTCCACGCCAGGCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159560 48 -    438239 GAGGGTCACCGATTTCCGTCCTCGGTGTGGGAGCCTCCACGCCAGGCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189632 48 -    514179 GGGTGTCACCGGTTCCCGTCCTCGGTGTGGCAGCCTCCACGCCATGCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846623 48 + 204313951 GGGCGTCACTGATTCCCGTCCTCGGTGTGGGGGCCTCCACGCCACGCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16006987 48 +  16417988 CCACGTCACTGATTCCTGTCCTCTGCGTGGAGGCctccactccacact
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       90212 48 +    298490 GGGCGTCACTGATTCCCATCCTCAGTGTGGAGGCctccacaccacgct
i cebCap1.NW_016108158v1   C 0 I 2017
s aotNan1.NW_018503740v1    25421576 48 -  25620257 GGGCACCACTGATTCCCGTCCTCGGTGTGGACGCCTCCGCACCACGCT
i aotNan1.NW_018503740v1   I 164 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=212668.000000
s hg38.chr5_KI270793v1_alt     59176 28 +    126136 GCACAC-----------------------------------TGCTCTTGGTGCCAGCAGGTCT
s panTro5.chr5             181326496 28 - 181907262 GCACAC-----------------------------------TGCTCTTGGTGCCAGCAGGTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047270 28 - 183735486 GCACAC-----------------------------------TGCTCTTGGTGCCAGCAGGTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134499 28 +    698298 GCACAC-----------------------------------TGCTCTTGGTGCCAGCAGGTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561737 28 - 121039945 GCACAC-----------------------------------TGCTGTTGGTGCCAGCAGGGAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516660 28 - 180051392 GCACGC-----------------------------------TGCTCTTGGTGCCAGCAGGTCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250379 28 - 181584905 GCACGC-----------------------------------TGCTCTTGGTGCCAGCAGGTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252321 28 -   1764207 GCACGC-----------------------------------TGCTCTTGGTGCCAGCAGGTCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262424 28 -  16742782 GCACGC-----------------------------------TGCTGTTGGTGCCAGCAGGTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565517 28 -  91010382 GCACGC-----------------------------------TGCTCTTGGTGCCAGCAGGTCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159608 28 -    438239 GCACGC-----------------------------------TGCTCTTGGTGCCAGCAGGTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189680 28 -    514179 GCACGC-----------------------------------TGCTCTTGGTGCCAGCAGGTCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846671 28 + 204313951 CCACGC-----------------------------------CGCTCTCGTCACCAGCAGGTCT
i calJac3.chr2             C 0 I 2
s saiBol1.JH378155          16007035 63 +  16417988 ccacgccacactccacgccacGTTCCATGCCACGCTCCATGCACTCTCGTCGCCAGTAGGTCT
i saiBol1.JH378155         C 0 I 2
s aotNan1.NW_018503740v1    25421624 28 -  25620257 CCACGC-----------------------------------TGCTCTCGTCGCCAGCAGGTCT
i aotNan1.NW_018503740v1   C 0 I 2277
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=75157.000000
s hg38.chr5_KI270793v1_alt     59204 11 +    126136 GAATTGTGGGT
s panTro5.chr5             181326524 11 - 181907262 GAATTGTGGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047298 11 - 183735486 GAATTGTGGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134527 11 +    698298 GAATTGTGGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561765 11 - 121039945 GAATTGTGGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516688 11 - 180051392 GAACTGTGGGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250407 11 - 181584905 GAACTGTGGGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252349 11 -   1764207 GAATTGTGGGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262452 11 -  16742782 GAATTGTGGGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565545 11 -  91010382 GAATTGTGGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159636 11 -    438239 GAATTGTGGGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189708 11 -    514179 GAATTGTGGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203846701 11 + 204313951 GCATTGGGGGT
i calJac3.chr2             I 2 I 1990
s saiBol1.JH378155          16007100 11 +  16417988 GCATCGTGGGC
i saiBol1.JH378155         I 2 C 0
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=299793.000000
s hg38.chr5_KI270793v1_alt     59215 49 +    126136 ATTCTATGGTGTCTCGTGGGTTTTACGTTTTAGTTTGCATCTTCCCATC
s panTro5.chr5             181326535 49 - 181907262 ATTCTATGGTGTCTCGTGGGTTTTACGTTTTAGTTTGCATCTTCCCATC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047309 49 - 183735486 ATTCTATGGTGTCTCGTGGGTTTTACGTTTTAGTTTGCATCTTCCCATC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134538 49 +    698298 ATTCTATGGTGTCTCGTGGGTTTTACGTTTTAGTTTGCATCTTCCCATC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561776 49 - 121039945 ATTCTATGGTGTCTCGTGGGTTTTAGGTTTTAATTTGCATCTTCCCATC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516699 49 - 180051392 ATTCTATGGTGTCTCGTGGGTTTTAGGTTTTAGTTTCCGTCTTCCCATC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250418 49 - 181584905 ATTCTATGGTGTCTCGTGGGTTTTAGGTTTTAGTTTCCGTCTTCCCATC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252360 49 -   1764207 ATTCTTTGGTGTCTTGTGGGTTTTAGGTTTTAGTTTCCGTCTTCCCATC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262463 49 -  16742782 ATTCTATGGTGTCTCGTAGGTTTTAGGTTTTAGTTTCCGTCTTCCCATC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565556 49 -  91010382 ATTCTATGGTGTCTCGTGGGTTTTAGGTTTTAGTTTCCGTCTTCCCATC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159647 49 -    438239 ATTCTATGGTGTCTCGTGGGTTTTAGGTTTTAGTTTCCGTCTTCCCATC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189719 49 -    514179 ATTCTATGGTGTCTCGTGGGTTTTAGGTTTTAGTTTCCGTCTTCCCATC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16007111 40 +  16417988 ATTCTATGG-GCCTCGTGG-------GGTTtagcttgcat-ttcccatc
i saiBol1.JH378155         C 0 I 1821
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=61192.000000
s hg38.chr5_KI270793v1_alt     59264 11 +    126136 ACTAATGAACC
s panTro5.chr5             181326584 11 - 181907262 GCTAAAGAACC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047358 11 - 183735486 GCTAAAGAACC
i panPan2.chr5             C 0 I 57
s gorGor5.CYUI01015805v1      134587 11 +    698298 GCTAATGAACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561825 11 - 121039945 ACTAATGAACC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516748 11 - 180051392 GCTAATGAACC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250467 11 - 181584905 GCTAATGAACC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252409 11 -   1764207 ACTAATGAACC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262512 11 -  16742782 GCTAATGAACC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565605 11 -  91010382 GCTAATGAACC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159696 11 -    438239 GCTAATGAACC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189768 11 -    514179 GCTAATGAACC
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=209168.000000
s hg38.chr5_KI270793v1_alt     59275 59 +    126136 CATTCTTGTCTTTACGGATGCTCCTGTGACTTGCCAGCTTGAGTCTTCCGTCCACTGCT
s gorGor5.CYUI01015805v1      134598 57 +    698298 CATTCTTGTCTTTACGGATGCTCCTGTGACTTGCCAGCTTGAGTCTTCCGTCCACTG--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120561836 57 - 121039945 CATTCTCGTCTTTATGGACGCTCCTGTGACTTGCCCGCCTGAGTCTTCCATCCACTG--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516759 57 - 180051392 CATTCTCGTCTTTACGGATGTTCCTGTGACTTGCCCGCTTGAGTCTTCCGTCCACTT--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250478 57 - 181584905 CATTCTCGTCTTTACGGATGTTCCTGTGACTTGCCCGCTTGAGTCTTCCGTCCACTT--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252420 57 -   1764207 CATTCTCGTCTTTACGGATGTTCCTGTGACTTGCCAACTTGAGTCTTCCGTCCACTT--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262523 56 -  16742782 CATTCTCGTCTTTACGGATGTTCCTGTGACTTGCCCGCTTGAGTCTT-CGTCCACTT--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565616 57 -  91010382 CATTCTCGTCTTTACGGATGTTCCTGTGACTTGCCCGCTTGAGTCTTCCGTCCACTT--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159707 57 -    438239 CAGTCTCGTCTTTACGGATGTTCCTGTGACTTGCCCGCTTGAGTCTTCCGTCCACTT--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189779 57 -    514179 TGTTCTCGTCTTTGCGGACGTTCCTGTGACTTGCCCGCTGGAGTCTTCCGTCCACTT--
i colAng1.NW_012118799v1   C 0 C 0
e panTro5.chr5             181326595  0 - 181907262 C
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e panPan2.chr5             183047369 57 - 183735486 I

a score=48203.000000
s hg38.chr5_KI270793v1_alt     59334 12 +    126136 CTCTCTCTCTCT
s panPan2.chr5             183047426 12 - 183735486 CTCTCTCTCTCT
i panPan2.chr5             I 57 C 0
s gorGor5.CYUI01015805v1      134655 12 +    698298 CTCTCTCTCTCT
i gorGor5.CYUI01015805v1   C 0 T 69
s nomLeu3.chr6             120561893 12 - 121039945 CTCGCTCTCTCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516816 11 - 180051392 CTCTCTCTCTC-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181250535 11 - 181584905 CTCTCTCTCTC-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252477 11 -   1764207 CTCTCTCTCTC-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      262579 12 -  16742782 CTCTCTCTCTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90565673 12 -  91010382 CTCTCTCTCTCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      159764 12 -    438239 CTCTCTCTCTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      189836 12 -    514179 CTCTCTCTCTCT
i colAng1.NW_012118799v1   C 0 C 0
e panTro5.chr5             181326595  0 - 181907262 C
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=107842.000000
s hg38.chr5_KI270793v1_alt     59346 29 +    126136 TGTTCTGGGCATTCTCTGCATGGCCTGGG
s panPan2.chr5             183047438 29 - 183735486 TGTTCTGGGCATTCTGTGCATGGCCTGGG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120561905 29 - 121039945 TGTTCTGGGCATTCTCTGTGTGGCCTGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179516827 29 - 180051392 TGTTCTTGGTGTTCTCTGCGTGGCCTGGG
i rheMac8.chr6             C 0 I 2714
s macFas5.chr6             181250546 29 - 181584905 TGTTCTTGGTGTTCTCTGCGTGGCCTGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      252488 29 -   1764207 TGTTCTTGGTGTTCTCTGCGTGGCCTGGG
i macNem1.NW_012012389v1   C 0 I 2715
s cerAty1.NW_012009470v1      262591 29 -  16742782 TGTTCTTGGCGTTCTCTGCGTGGCCTGGG
i cerAty1.NW_012009470v1   C 0 I 33
s chlSab2.chr4              90565685 29 -  91010382 TGTTCTGGGCGTTCTCTGCGTGGCCTGGG
i chlSab2.chr4             C 0 I 159
s manLeu1.NW_012110441v1      159776 29 -    438239 TGTTCTTGGCGTTCTCTGCGTGGCCTGGG
i manLeu1.NW_012110441v1   C 0 I 33
s colAng1.NW_012118799v1      189848 29 -    514179 TGTTCTGGGCATTCTCTGGGTGGCCTGGG
i colAng1.NW_012118799v1   C 0 I 2651
e panTro5.chr5             181326595  0 - 181907262 C
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e gorGor5.CYUI01015805v1      134667 69 +    698298 T

a score=860.000000
s hg38.chr5_KI270793v1_alt     59375 4 +    126136 TGTT
s panPan2.chr5             183047467 4 - 183735486 TGTT
i panPan2.chr5             C 0 T 102
s nomLeu3.chr6             120561934 4 - 121039945 CATT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181250575 4 - 181584905 CACT
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181326595 0 - 181907262 C
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      159805 33 -    438239 I
e chlSab2.chr4              90565714 159 -  91010382 I
e cerAty1.NW_012009470v1      262620 33 -  16742782 I
e colAng1.NW_012118799v1      189877 2651 -    514179 I
e macNem1.NW_012012389v1      252517 2715 -   1764207 I
e rheMac8.chr6             179516856 2714 - 180051392 I
e gorGor5.CYUI01015805v1      134667 69 +    698298 T

a score=4375.000000
s hg38.chr5_KI270793v1_alt     59379 4 +    126136 CATT
s panTro5.chr5             181326595 4 - 181907262 CATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047369 4 - 183735486 CATT
i panPan2.chr5             T 102 C 0
s gorGor5.CYUI01015805v1      134598 4 +    698298 CATT
i gorGor5.CYUI01015805v1   T 69 C 0
s nomLeu3.chr6             120561938 4 - 121039945 CATT
i nomLeu3.chr6             C 0 I 2592
s macFas5.chr6             181250579 4 - 181584905 CGCT
i macFas5.chr6             C 0 T 101
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      159805 33 -    438239 I
e chlSab2.chr4              90565714 159 -  91010382 I
e cerAty1.NW_012009470v1      262620 33 -  16742782 I
e colAng1.NW_012118799v1      189877 2651 -    514179 I
e macNem1.NW_012012389v1      252517 2715 -   1764207 I
e rheMac8.chr6             179516856 2714 - 180051392 I

a score=54089.000000
s hg38.chr5_KI270793v1_alt     59383 64 +    126136 CTCATCTTTACAGATGTTCCTGGGACTTGCCTGCTTGAGtcttctgtccactgctctctctctc
s panTro5.chr5             181326599 64 - 181907262 CTCGTCTTTACAGATGTTCTTGGGACTTGCCTGCTTGAGTCTTCTGTCCACTGCTCTCTCTCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047373 64 - 183735486 CTCGTCTTTACAGATGTTCTTGGGACTTGCCTGCTTGAGTCTTCCGTCCACTGCTCTCTCTCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134602 64 +    698298 CTTGTCTTTACGGATGCTCCTGTGACTTGCCAGCTTGAGTCTTCCGTCCACTGCTCTCTCTCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181250482 64 - 181584905 CTCGTCTTTACGGATGTTCCTGTGACTTGCCCGCTTGAGTCTTCCGTCCACTTCTCTCTCTCTC
i macFas5.chr6             T 101 I 62
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120561942 2592 - 121039945 I
e manLeu1.NW_012110441v1      159805 33 -    438239 I
e chlSab2.chr4              90565714 159 -  91010382 I
e cerAty1.NW_012009470v1      262620 33 -  16742782 I
e colAng1.NW_012118799v1      189877 2651 -    514179 I
e macNem1.NW_012012389v1      252517 2715 -   1764207 I
e rheMac8.chr6             179516856 2714 - 180051392 I

a score=546.000000
s hg38.chr5_KI270793v1_alt     59447 1 +    126136 t
s panTro5.chr5             181326663 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047437 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134666 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120561942 2592 - 121039945 I
e manLeu1.NW_012110441v1      159805 33 -    438239 I
e chlSab2.chr4              90565714 159 -  91010382 I
e cerAty1.NW_012009470v1      262620 33 -  16742782 I
e colAng1.NW_012118799v1      189877 2651 -    514179 I
e macNem1.NW_012012389v1      252517 2715 -   1764207 I
e macFas5.chr6             181250546 62 - 181584905 I
e rheMac8.chr6             179516856 2714 - 180051392 I

a score=0.000000
s hg38.chr5_KI270793v1_alt     59448 5 +    126136 ctctc
e panTro5.chr5             181326664 0 - 181907262 C
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120561942 2592 - 121039945 I
e manLeu1.NW_012110441v1      159805 33 -    438239 I
e chlSab2.chr4              90565714 159 -  91010382 I
e cerAty1.NW_012009470v1      262620 33 -  16742782 I
e colAng1.NW_012118799v1      189877 2651 -    514179 I
e macNem1.NW_012012389v1      252517 2715 -   1764207 I
e macFas5.chr6             181250546 62 - 181584905 I
e rheMac8.chr6             179516856 2714 - 180051392 I
e gorGor5.CYUI01015805v1      134667 0 +    698298 C
e panPan2.chr5             183047438 0 - 183735486 C

a score=910.000000
s hg38.chr5_KI270793v1_alt     59453 1 +    126136 t
s macFas5.chr6             181250608 1 - 181584905 T
i macFas5.chr6             I 62 C 0
s cerAty1.NW_012009470v1      262653 1 -  16742782 T
i cerAty1.NW_012009470v1   I 33 C 0
s chlSab2.chr4              90565873 1 -  91010382 T
i chlSab2.chr4             I 159 C 0
s manLeu1.NW_012110441v1      159838 1 -    438239 T
i manLeu1.NW_012110441v1   I 33 C 0
e panTro5.chr5             181326664 0 - 181907262 C
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120561942 2592 - 121039945 I
e colAng1.NW_012118799v1      189877 2651 -    514179 I
e macNem1.NW_012012389v1      252517 2715 -   1764207 I
e rheMac8.chr6             179516856 2714 - 180051392 I
e gorGor5.CYUI01015805v1      134667 0 +    698298 C
e panPan2.chr5             183047438 0 - 183735486 C

a score=70182.000000
s hg38.chr5_KI270793v1_alt     59454 29 +    126136 TGTTCTGGGCATTCTCTGCATGGCCTGGG
s panTro5.chr5             181326664 29 - 181907262 TGTTCTGGGCATTCTGTGCATGGCCTGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047438 29 - 183735486 TGTTCTGGGCATTCTGTGCATGGCCTGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134667 29 +    698298 TGTTCTGGGCATTCTCTGCATGGCCTGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181250609 29 - 181584905 TGTTCTTGGCGTTCTCTGCGTGGCCTGGG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      262654 29 -  16742782 TGTTCTGGGCGTTCTCTGCGTGGCCTGGG
i cerAty1.NW_012009470v1   C 0 I 2773
s chlSab2.chr4              90565874 29 -  91010382 TGTTCTGGGCGTTCTCTGCGTGGCCTGGG
i chlSab2.chr4             C 0 I 2986
s manLeu1.NW_012110441v1      159839 29 -    438239 TGTTCTGGGCGTTCTCTGCGTGGCCTGGG
i manLeu1.NW_012110441v1   C 0 I 3492
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120561942 2592 - 121039945 I
e colAng1.NW_012118799v1      189877 2651 -    514179 I
e macNem1.NW_012012389v1      252517 2715 -   1764207 I
e rheMac8.chr6             179516856 2714 - 180051392 I

a score=4140.000000
s hg38.chr5_KI270793v1_alt     59483 6 +    126136 TGTTCA
s panTro5.chr5             181326693 6 - 181907262 TGTTCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047467 6 - 183735486 TGTTCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134696 6 +    698298 TGTTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181250638 6 - 181584905 CACTCA
i macFas5.chr6             C 0 I 2643
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120561942 2592 - 121039945 I
e manLeu1.NW_012110441v1      159868 3492 -    438239 I
e chlSab2.chr4              90565903 2986 -  91010382 I
e cerAty1.NW_012009470v1      262683 2773 -  16742782 I
e colAng1.NW_012118799v1      189877 2651 -    514179 I
e macNem1.NW_012012389v1      252517 2715 -   1764207 I
e rheMac8.chr6             179516856 2714 - 180051392 I

a score=3173.000000
s hg38.chr5_KI270793v1_alt     59489 3 +    126136 TTC
s panTro5.chr5             181326699 3 - 181907262 TTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047473 3 - 183735486 TTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134702 3 +    698298 TTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120564534 3 - 121039945 ttt
i nomLeu3.chr6             I 2592 C 0
s macFas5.chr6             181253287 3 - 181584905 TTT
i macFas5.chr6             I 2643 C 0
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      159868 3492 -    438239 I
e chlSab2.chr4              90565903 2986 -  91010382 I
e cerAty1.NW_012009470v1      262683 2773 -  16742782 I
e colAng1.NW_012118799v1      189877 2651 -    514179 I
e macNem1.NW_012012389v1      252517 2715 -   1764207 I
e rheMac8.chr6             179516856 2714 - 180051392 I

a score=970849.000000
s hg38.chr5_KI270793v1_alt     59492 208 +    126136 TTAGATTTTAAAATGTTTTCCAATATGATGAGTCTGAAGTGGTGGCTCATTAAGTGAGTTTGGCAGTTTATTATGGGGTTTTCCGTTAGACACCAAAACCAGAGAGAATACGATTGTGACCCCGAAGACCCTTCACTTCCCATTGGGATCTCCAGGCCCGTTCTATTTTCCCCATTGTCTCTAGTCTCTCTCCCTCCCTGTTTTGTGC
s panTro5.chr5             181326702 208 - 181907262 TTAGATTTTAAAATGTTTTCCAATATGATGAGTCTCAAGTGGTGGCTCATTAAGTGAGTTTGGCAGTTTATTATGGGGTTTTCCGTTAGACACCAAAACCAGAGAGAATAAGATTGTGACCCCGAAGACCCTTCACTTCCCATTGGGATCTCCAGGCCCGTTCTATTTTCCCCATTGTCTCTAGTCTCTCTCCCTCCCTGTTTTGTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047476 208 - 183735486 TTAGATTTTAAAATGTTTTCCAATATGATGAGTCTCAAGTGGTGGCTCATTAAGTGAGTTTGGCAGTTTATTATGGGGTTTTCCGTTAGACACCAAAACCAGAGAGAATAAGATTGTGACCCCGAAGACCCTTCACTTCCCATTGGGATCTCCAGGCCCGTTCTATTTTCCCCATTGTCTCTAGTCTCTCTCCCTCCCTGTTTTGTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134705 208 +    698298 TTAGATTTTAAAATGTTTTCCAATATGAGGAGTCTGAAGTGGTGGCTCATTAAGTGAGTTTTGCAGTTTATTATGGGGTTTTCCGTTAGACACCAAAACCAGAGAGAATAAGATTGGGACCCCGAAGACCCTTCACTTCCCATTGGGATCTCCAGGCCCGTTCTATTTTCCCCATTGTCTCTAGTCTCTCTCCCTCCCTGTTTTGTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120564537 208 - 121039945 ttagattttaaaatgttttccaatatgatgagtctgaagtggtgactcattAAGTGAGTTTTGCAGTTTATTATGGGGTTTTCCGTTAGACACCGAAACCAGAGAGAATAAGATTGTGAGCCTGAAGGCCCCTCACTTCCCATTGGGATCTCCAGGCCCCTTCTGCTTTCCCCATTGTCTCTAGACTCTCCCCCTCTCTGTTTTGTGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179519570 208 - 180051392 TTAGATTTTCAAATGTTTTCCAATATGATGAGTCTGAAGTGGTGGCTCGTTAGGTGAGTTTTGCAGTTTATTATGGGGTTTTCCATTAGACACCGAAACCAGAGAGAATAAGATTGTGGCCCCTAAGGCCCCTCACTTCCCACTGGGATCTCCAGGCCAGCTTTGCTTTCTCCATTGACTCCAGTCTCTCTCCCTCCCTGTTTTGTGC
i rheMac8.chr6             I 2714 I 754
s macFas5.chr6             181253290 208 - 181584905 TTAGATTTTCAAATGTTTTCCAATATGATGAGTCTGAAGTGGTGGCTCGTTAGGTGAGTTTTGCAGTTTATTATGGGGTTTTCCATTAGACACCGAAACCAGAGAGAATAAGATTGTGGCCCCTAAGGCCCCTCACTTCCCACTGGGATCTCCAGGCCAGCTTTGCTTTCTCCATTGACTCCAGTCTCTCTCCCTCCCTGTTTTGTGC
i macFas5.chr6             C 0 I 754
s macNem1.NW_012012389v1      255232 208 -   1764207 TTAGATTTTCAAATGTTTTCCAATATGATGAGTCTGAAGTGGTGGCTCGTTAGGTGAGTTTTGCAGTTTATTATGGGGTTTTCCATTAGACACCGAAACCAGAGAGAATAAGATTGTGGCCCCTAAGGCCCCTCACTTCCCACTGGGATCTCCAGGCCAGCTTTGCTTTCTCCATTGACTCCAGTCTCTCTCCCTCCCTGTTTTGTGC
i macNem1.NW_012012389v1   I 2715 C 0
s cerAty1.NW_012009470v1      265456 208 -  16742782 TTAGATTTTCAAATGTTTTCCAATATGATGAGTCTGAAGTGGTGGCTCGTTAGGTGAGTTTTGCAGTTTATTATGGGGTTTTCCATTAGACACCGAAACCAGAGAGAATAAGATTGTGGCCCCTAAGGCCCCTCACTTCCCACTGGGATCTCCAGGCCAGCTTTGCTTTCTCCATTGACTCCAGTCTCTCTCCCTCCCTGTTTTGTGC
i cerAty1.NW_012009470v1   I 2773 I 116
s chlSab2.chr4              90568889 208 -  91010382 TTAGGTTTTCAAATGTTTTCCAATATGATGAGTCTGAAGTGGTGGCTCATTAGATGAGTTTTGCAGTTTATTATGGGGTTTTCCATTAGACACCAAAACCACAGAGAATAAGATTGTGGCCCCTAAGGCCCCTCACTTCCCACTGGGATCTCCAGGCCAGCTTTGCTTTCCCCATTGCCTCCAGTCTCTCTCCCTCCCTGTTTTGTGC
i chlSab2.chr4             I 2986 I 172
s colAng1.NW_012118799v1      192528 208 -    514179 ttagagtttcaaatgtttttcaatatgatgagtctgaagtggtggctcattAGGTGAGTTTTGCAGTTTATTATGGGGTTTTCCATTAGACACTGAAACCAGAGAGAGTAAGATTGTGGCCCCTAAGGTCCCTCACTTCCCACTGGGATCTCCAGGCCAGCTTTGCTTTCTCCATTGTCTCCAGTCTCTCTCCCTCCCTGTTTTGTGC
i colAng1.NW_012118799v1   I 2651 C 0
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      159868 3492 -    438239 I

a score=125220.000000
s hg38.chr5_KI270793v1_alt     59700 27 +    126136 CACTGGCTGTGACGATGATGGGGACGC
s panTro5.chr5             181326910 27 - 181907262 CATTGGCTGTGACGGTGATGGGGACGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047684 27 - 183735486 CATTGGCTGTGACGGTGATGGGGACGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134913 27 +    698298 CACTGGCTGTAACGGTGATGGGGACGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120564745 27 - 121039945 CACTGGCTGTGACAGTGGTGGGGACGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179520532 27 - 180051392 CACTGGCTGTGACGGTGTTGGGGACGC
i rheMac8.chr6             I 754 C 0
s macFas5.chr6             181254252 27 - 181584905 CACTGGCTGTGACGGTGTTGGGGACGC
i macFas5.chr6             I 754 C 0
s macNem1.NW_012012389v1      255440 27 -   1764207 CACTACCTGTGACAGTGTTGGGGACGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      265780 27 -  16742782 CACTGGCTGTGACGGTGTTGGGGACGC
i cerAty1.NW_012009470v1   I 116 C 0
s chlSab2.chr4              90569269 27 -  91010382 CACTGGCTGTGACGGTGTTGGGGACGC
i chlSab2.chr4             I 172 C 0
s colAng1.NW_012118799v1      192736 27 -    514179 CACTAGCTGTGACGGTGTTGGGGACGC
i colAng1.NW_012118799v1   C 0 I 231
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      159868 3492 -    438239 I

a score=990257.000000
s hg38.chr5_KI270793v1_alt     59727 238 +    126136 CTGTCTCATGTCCCCATGGACTGAGGCGCTGCTTTATCGCGTGACGTCACCCACTCTCCCGCCCCTCGGCAGGCTCTTCTCTGTGGTTTCACCCGGGGCTGTTTCCTTCAGCCTAAGAATGCCCTGGTTATGTCTTGTGGTGCAGATCTGCCTTGGTTTCTCCAAAAATGCCTTCACTTTTCCTTCGTGTCTGGGGTGCTTCTGTGAGCACAGGACTGCGGGCtggctttacttcttc
s panTro5.chr5             181326937 213 - 181907262 CTGTCTCATGTCCCCATGGACTGAGGCGCTGCTTTATCGCATGACGTCACCCACTCTCCGGCCCCTCGGCAGGCTCTTCTCTGTGCTTTCACCCGGGGCTGtttccttcagcctaagaatgccctggttatgtcttgtggtgcagatctgccttggcttatccaaaaacgccttcacttttccttcgtgtctggggtgcttctgtgagcacag-------------------------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047711 213 - 183735486 CTGTCTCATGTCCCCATGGACTGAGGCGCTGCTTTATCGCATGACGTCACCCACTCTCCGGCCCCTCGGCAGGCTCTtctctgtgctttcacccggggctgtttccttcagcctaagaatgccctggttatgtcttgtggtgcagatctgccttggcttatccaaaaacgccttcacttttccttcgtgtctggggtgcttctgtgagcacag-------------------------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      134940 236 +    698298 CTGTCTCATGTCCCCATGGACTGAGGCGCTGCTTTATCGCGTGACGTCACTCACTCTCCGGCCCCTCGGCAGGCTCTtctctgtgctttcacccggggctgtttccttcagcctaagaatgccctggttatgtcttgtggtgcagatctgccttggcttatccaaaaatgccttcacttttccttcgtgtct-gggtgattctgtcagcacaggactgcgggctggctttacttc-tc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120564772 238 - 121039945 CTGTCTCATGTCCCCATGGACTGAGGCGCTGCTTTATTGCATGACGTCACCCACTTTCCGGCCCCTCGGCAGGCTCTTCTCTGTGCTTTCACCCGGGGCTGTTTCCTTCAGCCTAAGAATGCCCTGGCTATGTCTTGTAGTGCAGATCTGCCTTGGCTTATCCGAAAATGCCTTCACTTTCCCTTCGAGTCTGGGATGCTTCTGTGAGCACAGGACTGTGGGCtggctttacttctcc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179520559 219 - 180051392 CTGTCCCGTGTCCCCATGGACTGAGGTGCTGCTTTACGGCATGACGTCACCCACTGTCTGGCCCCTCGGCAGGCTCTTCTCTGCGCTTTCACctggggctgtttccttcagcctaagaatgccctagttatgtcttgtggtacggatctgccttggcttatccgaaaatgcctttacttctccttcgtgtctggggtgcttccgtgagcacaggactgc-------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181254279 219 - 181584905 CTGTCCCGTGTCCCCATGGACTGAGGTGCTGCTTTACGGCATGACGTCACCCACTGTCTGGCCCCTCGGCAGGCTCTtctctgcgctttcacccggggctgtttccttcagcctaagaatgccctagttatgtcttgtggtacggatctgccttggcttatccgaaaatgcctttacttctccttcgtgtctggggtgcttccgtgagcacaggactgc-------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      255467 219 -   1764207 CTGTCCCGTGTCCCAATGGACTGAGGTGCTGCTTTATGGCATGACGTCACCCACTCTCTGGCCCCTCGGCAGGATCTTCTCTGCGCTTTCACCCGGGGCTGtttccttcagcctaagaatgccctagttatgtcttgtggtacggatctgccttggcttatccgaaaatgcctttacttctccttcgtgtctggggtgcttccgtgagcacaggactgc-------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      265807 219 -  16742782 CTGTCCCGTGTCCCCATAGACCGAGGTGCTGCTTTACAGCATGACGTCACCCACTCTCTGGCCCCTCGGCAGGCTCTtctctgcgctttcacccagggctgtttccttcagcctaagaatgccctagttatgtcttgtggtacggatctgccttggcttatccgaaaatgcctttacttctccttcgtgtctggggtgcttccgtgagcacaggactgc-------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90569296 227 -  91010382 CTATCTCGTGTCCCCATGGGCTGAGGTGCTGCTTTACGGCATGACGTCACCCAGTCTCTGGCCCCTCGGCAGGCTCTTAtctgcgctttcaccaggggctgtttccttcagcctaagaatgccctagttatgtcttgtggtacggatctgccttggcttatccgaaaatgcctttacttctccttcgtgtctggggtgcttctgtgaacacaggactgcgggctggc-----------
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      192994 227 -    514179 CTGTCTCATGTCCCCACGGACTGAGGTGCTGCTTTACGGCATGACGTCACCGACTCTCTGACCCCTCAACAGGCTCTTCTCTGCGCTTTCACCCGGGGCTGtttccttcagcctaagaatgccctagttatgtcttgtggtacggatctgccttggcttatccgaaaatgcctttacttctcctccgtgtctggtgcgcttccgtgggcacaggactgcgggctggc-----------
i colAng1.NW_012118799v1   I 231 C 0
e aotNan1.NW_018503740v1    25421652 2277 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       90260 2017 +    298490 I
e saiBol1.JH378155          16007151 1821 +  16417988 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      159868 3492 -    438239 I

a score=1365.000000
s hg38.chr5_KI270793v1_alt     59965 1 +    126136 t
s gorGor5.CYUI01015805v1      135176 1 +    698298 t
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120565010 1 - 121039945 t
i nomLeu3.chr6             C 0 C 0
s saiBol1.JH378155          16008972 1 +  16417988 T
i saiBol1.JH378155         I 1821 C 0
s cebCap1.NW_016108158v1       92277 1 +    298490 T
i cebCap1.NW_016108158v1   I 2017 C 0
s aotNan1.NW_018503740v1    25423929 1 -  25620257 T
i aotNan1.NW_018503740v1   I 2277 C 0
e panTro5.chr5             181327150 0 - 181907262 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e calJac3.chr2             203846712 1990 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      159868 3492 -    438239 I
e chlSab2.chr4              90569523 0 -  91010382 C
e cerAty1.NW_012009470v1      266026 0 -  16742782 C
e colAng1.NW_012118799v1      193221 0 -    514179 C
e macNem1.NW_012012389v1      255686 0 -   1764207 C
e macFas5.chr6             181254498 0 - 181584905 C
e rheMac8.chr6             179520778 0 - 180051392 C
e panPan2.chr5             183047924 0 - 183735486 C

a score=12033.000000
s hg38.chr5_KI270793v1_alt     59966 6 +    126136 tcctgt
s gorGor5.CYUI01015805v1      135177 6 +    698298 tcctgt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120565011 6 - 121039945 tcctgt
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203848702 6 + 204313951 TCCTGT
i calJac3.chr2             I 1990 C 0
s saiBol1.JH378155          16008973 6 +  16417988 TCCTGT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       92278 6 +    298490 TCCTGT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25423930 6 -  25620257 TCCTGT
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5             181327150 0 - 181907262 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      159868 3492 -    438239 I
e chlSab2.chr4              90569523 0 -  91010382 C
e cerAty1.NW_012009470v1      266026 0 -  16742782 C
e colAng1.NW_012118799v1      193221 0 -    514179 C
e macNem1.NW_012012389v1      255686 0 -   1764207 C
e macFas5.chr6             181254498 0 - 181584905 C
e rheMac8.chr6             179520778 0 - 180051392 C
e panPan2.chr5             183047924 0 - 183735486 C

a score=3310544.000000
s hg38.chr5_KI270793v1_alt     59972 393 +    126136 ctggggtgcttctgtgagcaca-gactcg-gggctggcagctttctctcctttcaccactgctgagatgccattcaatcttcttttggctcccatggtttcactgaaagtcagctgtgaaacctttgttgtttctttgaagataaGttccaaaaattatttataaatgtaatacaattccaatcagaatcccaataggatttttaaaaatagaaatgaacaggct-gtcctgaattttacaaggaggtataaacgatcaataatggccaggatgagtgtggtgaagaccacagcagatgccaggatttattatcaaccatttatta--agacAGCATTACATTGGCTCAGGAATGGGCAAACAACCTTATA-TCCTTCTTCAAACAAAAAATAtgggtt
s panTro5.chr5             181327150 370 - 181907262 ------------------------actcg-gggctggcagctttctctcctttcaccactgctgagatgccattcaaacttcttttggctcccatggtttcactgaaagtcagctgtgaatcctttgttgtttctttgaagataagttccaaaaatgatttataaatgtaatacaattccaatcagaatcccaataggatttttaaaaatagaaatgaacaggct-gtcctgaattttacaaggaggtataaacgatcaagaatggccaggatgagtgtggtgaagaccacagcagatgccaggatttattatcaaccatttatta--agacagcattacattggctcaggaatgggcaAACAACCTTATA-TCCTTCTTCAAACAAAAAATATGGGTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183047924 370 - 183735486 ------------------------actcg-gggctggcagctttctctcctttcaccactgctgagatgccattcaatcttcttttggctcccatggtttcactgaaagtcagctgtgaatcctttgttgtttctttgaagataaGttccaaaaatgatttataaatgtaatacaattccaatcagaatcccaataggatttttaaaaatagaaatgaacaggct-gtcctgaattttacaaggaggtataaacgatcaagaatggccaggatgagtgtggtgaagaccacagcagatgccaggatttattatcaaccatttatta--agacagcattacattggctcaggaatgggcaaacaACCTTATA-TCCTTCTTCAAACAAAAAATATGGGTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      135183 394 +    698298 ctggggtgcttctgtgagcaca-gactcg-gggctggcagctttctctcctttcaccactgctgagatgccattcaatcttcttttggctcccatggtttcactgaaagtcagctgtgaatcctttgttgtttctttgaacataaGttccaaaaattatttataaatgtaatacaattccaatcagaatcccaataggatttttaaaaatagaaatgaacaggctggtcctgaattttacaaggaggtataaacaatcaagaatggccaggatgagtgtggtgaagaccacagcagatgccaggatttattatcaaccatttatta--agacAGCATTACATTGGCTCAGGAATGGGCAAACAACCTTATA-TCCTTCTTCAGACAAAAAATATGGGTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120565017 394 - 121039945 ctggggtgctcctgtgagcaca-gatttg-gggctggcagctttctctcctttcaccactgctgagatgccgttcgatcttcttctggctcccatggtttcattgaaagtcagctgtgaatcctttgttgcttctttgaagataaGttccaaaagttacttataaatgtaatacaattccaatcagaatcccaataggattttttaaaatagaaatgaacaggctggtcctaaattttacaaggaggtgtaaatgatcaagaatgtccaggatgagtgtggtgaagagcacaccagatgccaggatttattatcaaccatttatta--agacagtgttacattggttcaggaatgggcaaacaACCTTATA-TCCTTCTTCAAACAAAAAATGtgggtt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179520778 366 - 180051392 ------------------------------gggctggcagctttctctcctttccccactgctgagatgctgttcaatcttcttcaggctcctatggtttcattgaaagtcagctgtgaatccttcgttgcttctttgaagataagttccaaaaacaatttataaatgtaatacaattccaatcagaatcccaataggattttttcaaatagaaatgaacaggctggtcctgaattttacaaggaggcataaacgatcaagaacggccaggatgagtgt-gcgaagagcacaccagatgccaagacttattatcaaccatttatta--agacagtgttacgttggctcaggcattggcaaacaACATCATATTCTTTCTTCAAACAAAAAATGTGGGTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181254498 366 - 181584905 ------------------------------gggctggcagctttctctcctttccccactgctgagatgctgttcaatcttcttcaggctcctatggtttcattgaaagtcagctgtgaatccttcgttgcttctttgaagataaGttccaaaaacaatttataaatgtaatacaattccaatcagaatcccaataggattttttcaaatagaaatgaacaggctggtcctgaattttacaaggaggcataaacgatcaagaacggccaagatgagtgt-gcaaagagcacaccagatgccaagatttattatcaaccatttatta--agacagtgttacgttggctcaggcattggcaaacaACATCATATTCTTTCTTCAAACAAAAAATGtgggtt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      255686 366 -   1764207 ------------------------------gggctggcagctttctctcctttccccactgctgagatgctgttcaatcttcttcaggctcccatggtttcattgaaagtcagctgtgaatccttcgttgcttctttgaagataagttccaaaaacaatttataaatgtaatacaattccaatcagaatcccaataggattttttcaaatagaaatgaacaggctggtcctgaattttacaaggaggcataaatgatcaagaacggccaggatgagtgt-gcgaagagcacaccagatgccaagatttattatcaaccatttatta--agacagtgttacgttggctcaggcattggcaaacaacatcaTATTCTTTCTTCAAACAAAAAATGTGGGTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      266026 366 -  16742782 ------------------------------gggctggcagctttctctcctttccccactgctgagatgctgttcaatcttcttcaggctcccatggtttcattgaaagtcagctgtgaatccttcgttgcttctttgaagataaGttccaaaaataatttataaatgtaatacaattccaatcagaatcccaataggattttttcaagtagaaatgaacagcctggtcctgaattttacaaggaggcataaacgatcaagaacggccaggatgagtgt-gcaaagagcacaccagatgccaagatttattatcaaccatttatta--agacagtgttacgttggctcaggcattggcaAACAACATCATATTCTTTCTTCAAACAAAAAATGTGGGTT
i cerAty1.NW_012009470v1   C 0 I 307
s chlSab2.chr4              90569523 358 -  91010382 --------------------------------------agctttctctcctttccccactgctgagatgctgttcaatcttcttcaggctcccatggtttcattgaaagtcagctgtgaatccttcgttgcttctttgaagataaGttccaaaaataatttataaatgtaatacgattccaatcagaatcccaataggattttttcaaataggaatgaacaggctggtcctgaattttacaaggaggcataaacgatcaagaacggccaggatgagtgt-gcaaagagcacaccagatgccaagatttattatcaaccatttatta--agacagtgttacgttggctcaggcattggcaaacaACATCATATTCTTTCTTCAAACAAAAAATGtgggtt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      163360 395 -    438239 CTGgggtgcttccgtgagcaca-ggactgcgggctggcagctttctctcctttccccactgctgagatgctgttcaatcttcttcaggctcccatggtttcattgacagtcagctgtgaatccttcgttgcttctttgaagataaGttccaaaaataatttataaatgtaatacaattccaatcagaatcccaataggattttttcaaatagaaatgaacagcctggtcctgaattttacaaggaggcataaacgatcaagaacggccaggatgagtgt-gcaaagagcacaccagatgccaagatttattatcaaccatttatta--agacagtgttacgttggctcaggcattggcaaacaacatcaTATTCTTTCTTCAAACAAAAAATGTGGGTT
i manLeu1.NW_012110441v1   I 3492 C 0
s colAng1.NW_012118799v1      193221 358 -    514179 --------------------------------------agctttctctcctttccccactgctgagatgctgttcaatcttctttgggctcccctggtttcactgaaagtcagctgtgaatcttttgttgcttctttgaagataaGttccaaaaataatttataaatgtaatacaattccaatcagaatcccaataggattttttcaaatagaaatgaacaggctggtcctgaattttacaaggaggcataaacgatcaagaacagccaggatgagtgt-gcaaagagcacaccagatgccaagatttattatcaaccatttatta--agacagtgttacgttggctcaggcattggcaAACAACATCATATTCTTTCTTCAAACAAAAAATGTGGGTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203848708 395 + 204313951 CTGGGGTGCCTCTGtgagtgcaggactct-gggctggcagctttctctcctttcaccacggctgagatgctgttcaatcttcttctggctcccatggtttcattgaaagtcagctgtgaatcctttcttgtttctttgaagataaAttccaaaaataatttataaatttaatgcaattccaatccgaatcccaatcagatttttaaaaatagatatgaacaggctggtcctgaactttatgagggg---taaacgatcatgaatagccaggatgaacgcggcgaatcacacagcagatgccaagatttattgtcaaccatttattaagagacagtgCTACCCTGGCTCAGGGCTCTGCAAGCACCATCATATTCTTACTTCAAACAAAAAACGGGCgtt
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16008979 392 +  16417988 C-GGGGTGCCTCAGtgaacgcaggactct-gggctggccgctttctctcctttcactgcggctgagatgctgttcaatcttcttctggctcccatggtttcattgaaagtcagctgtgaatcctttgttgtttctttgaagataaAttccgaaaataatttataaatgtaatacaattccaatcagaatcccgatcagatattttaaaatagaaatgaacaggctggtcctgaactttacgagcag---taaacaatcaagaaaagccaggatgaACATGGCGAGTAACACACCAGATGCCAAGATTTACCGTCAACTGTTTATTA--AGATGGCGTTATCCTGGCTCAGGACTCTGAAAGCACCATCATATTCATACTTCAAACAAAAAATGGGCAtt
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       92284 392 +    298490 CTGGAGTGCCTCTGTGAGCGCaggacgct-gggctggccactttctctcctttcactgcggctgagatgctgttcaatcttcttctggctcccatggtttcattgaaagtcagctgtgaatcctttgttgtttctttgaagataaattccaaaaataatttataaatgtaatacaattccaatcagaatcccaatcagatttttaaaaatagtaatgaacaggctggtcctgaactttacgacggg---taaacgatcaagaacagcccggacgaatgcggcgaatgacacaccagatgccaagacttaccgtcaaccgtttatta--agacggtgtTACCCTGGCTCAGGG-GCTGCAAGCACCGTCATATTCTTACTTCAGACAAAAGATTGGCATT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25423936 388 -  25620257 CTGGGGTGCCTCTGTGAGCGCaggactct-gggctggcagctttctctcctttcaccacggctgagatgctgttcaatcttcttctggctcccatggtttcactgaaagtcagctgcgaatcctttgttgtttctttgaagataaAttccaaaaataatttataaatttaatacaattccaatcagaatcccaatcagatttttaaaaatagaaatgaacagactggtcctgaactttctgagggg---ttaacgatcaagaacagccgggacgaATGTGGCGAGTAACACACCAGATGCCAAGATCTACCGTCAACCGTTTGTTA--AGACGGTGTTACCCTGGCTCAGAACTCTGCAAGCACCATCATATTCTTACTTCAAACAAAACATTG-----
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=2434346.000000
s hg38.chr5_KI270793v1_alt     60365 272 +    126136 gcttgtctttttcatattgatttacagagttttgtttttctggatacaattttttg-t-aagttctatgactggcaaatgccttctagtcaagatctttttttctctcatttttacagtatgctttcttaaagagaagtgttgaaaactggaaactatttcactgttagacctatcctttcagtttttaac-ttttattgatggtatttttCAGCGATTCCTCCTCCCCTGGAGACTACGTGGGTGATATTTAGTTATTGTCTTAGCAAACTTGT
s panTro5.chr5             181327520 273 - 181907262 TCTTGTCTTTTTCATATTGATTTACAGAGTTTTGTTTTTCTGGATACAATTTTTTG-TTAAGTTCTATGACTGGCAAATGCTTTCTAGTCAAGATCTTTTTTTCTCTCATTTTTACAGTATGCTTTCTTAAAGAGAAGTGTTGAAAACTGGAAACTATTTCACTGTTAGACCTATCCTTTCAGTTTTTAAC-TTTTATTGATGGTATTTTTCAGCTACTCCTCCTCCCCTGGAGACGACATGGGTGATACTTAGTTATTGTCTTAGCAAACTTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183048294 273 - 183735486 GCTTGTCTTTTTCATATTGATTTACAGAGTTTTGTTTTTCTGGATACAATTTTTTG-TTAAGTTCTATGACTGGCAAATGCTTTCTAGTCAAGATCTTTTTTTCTCTCATTTTTACAGTATGCTTTCTTAAAGAGAAGTGTTGAAAACTGGAAACTATTTCACTGTTAGACCTATCCTTTCAGTTTTTAAC-TTTTATTGATGGTATTTTTCAGCTACTCCTCCTCCCCTGGAGACTATATGGGTGATACTTAGTTATTGTCTTAGCAAACTTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      135577 268 +    698298 GCTTGTCTTTTTCATATTGATTTACAGAGTTTTGTTTTTCTGGATACAATTTTTTG-T-AAGTTCTA----TGGCAAATGCCTTTTAGTCAAGATCTTTTTTTCTCTCATTTTTACAGTATGCTTTCTTAAAGAGAAGTGTTGAAAACTGGAAACTATTTCACTGTTAGACCTATCCTTTCAGTTTTTAAC-TTTTATTGATGGTATTTTTCAGCTATTCCTCCTCCCCTGGAGACTACATGGGTGATATTTAGTTATTGTCTTAGCAAACTTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120565411 273 - 121039945 gcttgtctttttcatattgatttacagaattttgtttttctggatacaattttttg-t-aagttttataagtggcaaataccttctAGTCAAGATCTTCTTCTCTCTCATTTTTACAGTACGCTTTCTTAAAGAGAAGTGTTGAAAACTGGAAACTATTTCACTGTTGGACCTGTCCTTTCAGTTTTTAACTTTTTGTTGATGGTATTTTTCAGCTATTACTCCTCCCCTGGAGACTACATGGGTGATATTTAGTTATTGTCTTAGCAAACTTTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179521144 273 - 180051392 GCTTGTCTTTTTCATATTGATTTACAGAGTTTTGTTTTTCTGCATACAATTTTTTG-T-AAGTTTTATGAGCGGCAAATGCCTTCTGGTCAAGATCTTTTTTTCTCTCATTTTTACAGTATGCTTTCTTAAAGAGAAGTGTTGAAAGCTGGAAAGTAATTTACTGTTAGACCTATCCTTTCAGTTTTTAACTTTTTATTGATGGTATTTTTCAGCTATTCCTCCTCCCCTGGAGATTACATGGGTGATACTTAGTTATTGTCTTAGCAAACTTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181254864 273 - 181584905 gcttgtctttttcatattgatttacagagttttgtttttctgcatacaattttttg-t-aagttttatgagcggcaaatgccttctggtcaagatctttttttctctcatttttacagtatgctttcttaaagagaagtgttgaaagctggaaagtaatttactgttagacctatcctttcagtttttaactttttattgatggtatttttcagctattcctcctcccctggagattacatgggtgatacttagttattgtcttagcaaacttgt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256052 273 -   1764207 GCTTGTCTTTTTCATATTGATTTACAGAGTTTTGTTTTTCTGCATACAATTTTTTG-T-AAGTTTTATGAGCGGCAAATGCCTTCTGGTCAAGATCTTTTTTTCTCTCATTTTTACAGTATGCTTTCTTAAAGAGAAGTGTTGAAAGCTGGAAAGTAATTTACTGTTAGACCTATCCTTTCAGTTTTTAACTTTTTATTGATGGTATTTTTCAGCTATTCCTCCTCCCCTGGAGATTACATGGGTGATACTTAGTTATTGTCTTAGCAAACTTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      266699 272 -  16742782 GCTTGTCTTTTTCATATTGATTTACAGAGTTTTGTTTTTCTGCATACAA-TTTTTG-T-AAGTTTTATGAGCGGCAAATGCCTTCTGGTCAAGATCTTTTTTTCTCTCATTGTTACAGTATGCTTTCTTAAAGAGAAGTGTTGAAAGCTGGAAAGTAATTTACTGTTAGACCTATCCCTTCAGTTTTTAACTTTTTATTGATGGTATTTTTCAGCTATTCCTCCTCCCCTGGAGATTACATGGGTGATATTTAGTTACTGTCTTAGCAAACTTGT
i cerAty1.NW_012009470v1   I 307 C 0
s chlSab2.chr4              90569881 273 -  91010382 gcttgtctttttcatattgatttacagagttttgtttttctgcatacaattttttg-t-aagttttatgagcggcaaatgccttctggtccagatctttttttctctcatttttacagtacgctttcttaaagagaagtgttgaaagctggaaagtaatttactgttAGACCTATCCTTTCAGTTTTTAACTTTTTATTGATGGTATTTTTCAGCTATTCCTCCTCCCCTGGAGATTACATGGGTGATATTTAGTTACCATCTTAGCAAACTTGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      163755 273 -    438239 GCTTGTCTTTTTCATATTGATTTACAGAGTTTTGTTTTTCTGCATACAATTTTTTG-T-AAGTTTTATGAGCGGCAAATGCCTTCTGGTCAAGATCTTTTTTTCTCTCATTTTTACAGTATGCTTTCTTAAAGAGAAGTGTTGAAAGCTGGAAAGTAATTTACTGTTAGACTTATCCCTTCAGTTTTTAACTTTTTATTGATGGTATTTTTCAGCTATTCCTCCTCCCCTGGAGATTACATGGGTGATATTTAGTTACTGTCTTAGCAAACTTGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      193579 274 -    514179 GCTTGTCTTTTTCATATTGATTTATAGAGTTTTGTTTTTCTGCATACAATTTTTTGTT-AAGTTTTATGAGTGGCAAATGCCTTCTGGTCAAGATCTTTTTTTCTCTCATTTTTACAGTATGCTTTCTTAAAGAGAAGTGTTGAAAGCTGGAAACTAATTTACTGTTAGACCTATCCTTTTAGTTTTTAACTTTTTATTGATGGTATTTTTCAGCTATTCCTCCTCCCCTGGAGATTACATGGGTGATATTTAGTTACTGTCTTAGCAACCTTGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203849103 264 + 204313951 gcttgtctttttcacatgcatttacacagttttgtttttctggatgcaattttttg-a-aagttttgtgagtgacaaatgcgttctggtcaatatctt-ttttctttcatttttatagtatttttttttaaagagaagtGTGGAAA-CTGGAAATGAATGTACTGCTAGACATTTCCTTTCAGTT----AGTTTTTCTAGATGGTA-TTTTCAGCTGTTCCTCCT-CCCTGGAGACTACCTGGTTGATGTTTAGTTATTGTGTT-GCAAACTCAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16009371 267 +  16417988 gcttgtctttttcatatgcatttacagagttttgtttttctggatgcaattttttg-a-aagttttctgagtggcaaatgccttctagtcagtatctt-ttttctttcgtttttacagtatgtttttttaaagagaagtgttgaaa-ctggaaatgaatttactgttggacctatcctttcagtt----agtttttatgGATGGCATTTTTCAGCGGTTCCTCCTCCCCTGGAGACTACGTGGTTGATGTTTAGTTATTGTCTTAGCAAACTCAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       92676 267 +    298490 GCTTGTCTTTTTCACATGCAGTTACAGAGTTTTGCTTTTCTGGATGCAATTTTTTG-A-AAGTTTTGTGAGTGGCAAATGCCTTCTAGTCAATAACTT-TTTTCTTTCATTTTTACAGTATGTTTTTTTAAAGAGAAGTGTTGAAA-CTGGAAATGAATTTACTGTTAGACCTATCCTTTCCGTT----AGTTTTTATGGGTGGTATTTTTCAGCCATTCCTCCTCCCCTGGAGACTACATGGTGGATGTTTAGTTATCGTCTTAGAAAACTCAT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25424324 250 -  25620257 ----------------TGCATTTACAGAGTTTTGTTTTTCTGGATGCAGGTTTTTG-A-AAGTTTCGTGAGTGGCAAATGCCTTCTAGTCAGTATCTT-TTTTCTTTCATTTTCACAGTATG-TTTTTTAGAGAGAAGTGTTGAAA-CTGGAAATGAATTTACTGTTAGACCTGTCCTTCCACTT----AGTTTTTCTGGATGGTATTTTTCAGCCATTCCTCCTCCCCTGGAGACGACGTGCTTCATGTTTAGTCATTGTCTCAGCAAACTCAT
i aotNan1.NW_018503740v1   C 0 I 18
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=200843.000000
s hg38.chr5_KI270793v1_alt     60637 30 +    126136 ATGCTTTTAGTCAGCGAATTATAAGCTATT-
s panTro5.chr5             181327793 30 - 181907262 ATGCTTTTAGTCAGTGAATTATAAGCTATT-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183048567 30 - 183735486 ATGCTTTTAGTCAGTGAATTATAAGCTATT-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      135845 30 +    698298 ATGCTTTTAGTCAGTGAATTATAAGCTATT-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120565684 30 - 121039945 ATGCTTTTAGTCAGTGAATTATAAGCTATT-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179521417 30 - 180051392 ATGCTTTTAGCCAGTGAATTATAAGCTATT-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255137 30 - 181584905 atgcttttagcCAGTGAATTATAAGCTATT-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256325 30 -   1764207 ATGCTTTTAGCCAGTGAATTATAAGCTATT-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      266971 30 -  16742782 ATGCTTTTAGCCAGTGAATTATAAGCTATT-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570154 30 -  91010382 ATGCTTTTAGCCAGTGAATTATAAGCTATT-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164028 30 -    438239 ATGCTTTTAGCCAGTGAATTATAAGCTATT-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      193853 30 -    514179 ATGCTTTTAGCCAGTGAATTATAAGCAATT-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203849367 16 + 204313951 GTGCTTTTAGGCC---------------ACG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16009638 31 +  16417988 GTGCTTTTAGGCCGTTAATTATAAGCTAACG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       92943 31 +    298490 GTGCCTTTAGGCCGTTAATTATAAGCTAACG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25424574 18 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=3474148.000000
s hg38.chr5_KI270793v1_alt     60667 388 +    126136 GGGTAATCTTTAAAGTATGTGAAATAAAG-CCTCATCCTGGGAGGGGTCGCCTTGTTGCCTAAGGGCTCCTGGCCCAGCTCTG-CT-AGAGTAAGAGCTCAGTGTCTTGTTATCAGGGACAGAG-----AGGACCCTCCAGTCACACACTGCACCTCGGTGACTCGGGTCACAGAGGTGGCCCAGGGCTGTCCCCTCACCTGTAAAATAGTGCAGGAGCAGCACCTGCTTCACCGGGCATGCTGCAGGCAAGCGGACCTGGCACTCTGGGAGCCAAGCCCTGCACACGGGGCGCCCTCTGTTGTTGTTCTTCTTGTACGGGGCA-GGCACACAAGAGTCTCGAGTCCTCCAACCCAGCCCGGGGCTGCTGGGGCCACATGGAAATGCGGCTGCGCCC
s panTro5.chr5             181327823 388 - 181907262 GGGTAATCTTTAAAGTATGTGAAATAAAG-CCTCATCCTGGGAGGGGTCGCCTTGTTGCTTAAAGGCTCCTGGCCCAGCTCTG-CT-AGAGTAAGAGCTCAGTGTCTCGTTATCAGGGGCAGAG-----AGGACCCTCCAGTCACACACTGCACCTCGGTGACTCGGGTCACAGAGGTGGCCCAGGGCTGTCCCCTCACCTGTAAAATAGTGCAGGAGCAGCACCTGCTTCACCGGGCATGCTGCAGGCAAGCGGACCTGGCACTCTGGGCGCCAAGCCCTGCACACGGGGCGCCCTCTGTGGTTGTTCTTCTTGTACAGGGCA-GGCACACAAGAGTCTCGAGTCCTCCAACCCAGCCCGAGGCTGCTGGGGCCACATGGAAATGCGGCTGTGCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183048597 388 - 183735486 GGGTAATCTTTAAAGTATGTGAAATAAAG-CCTCATCCTGGGAGGGGTCGCCTTGTTGCTTAAAGGCTCCTGGCCCAGCTCTG-CT-AGAGTAAGAGCTCAGTGTCTTGTTATCAGGGACAGAG-----AGGACCCTCCAGTCACACACTGCACCTCGGTGACTCGGGTCACAGAGGTGGCCCAGGGCTGTCCCCTCACCTGTAAAATAGTGCAGGAGCAGCACCTGCTTCACCGGGCATGCTGCAGGCAAGCGGACCTGGCACTCTGGGCGCCAAGCCCTGCACACGGGGCGCCCTCTGTGGTTGTTCTTCTTGTACAGGGCA-GGCACACAAGAGTCTCGAGTCCTCCAACCCAGCCCGGGGCTGCTGGGGCCACATGGAAATGCGGCTGTGCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      135875 389 +    698298 GGGTAATCTTTAAAGTATGTGAAATAAAG-CCTCATCCTGGGAGGGGTCGCCTTGTTGCTTAAAGGCCCCTGGCCCAGCTCTGCCT-AGAGTAAGAGCTCAGTGTCTTGTTATCAGGGACAGAG-----AGCACCCTCCACTCCCACACTGCACCTCGGTGACTCGGGTCACACAGGTGGCCCAGGGCTGTCCCCTCACCTGTAAAATAGTGCAGGAGCAGCACCTGCTTCACCGGGCATGCTGCAGGCAAGCGGACCTGGCACTCTGGGAGCCAAGCCCTGCACACAGGGCGCCCTCTGTGGTTGTTTTTCTTGTACCGGGCA-GGCACACAAGAGTCTCGAGTCCTCCAACTCAGCCCGGGGCTGCTGGGGCCACATGGAAATGCGGCTGCGCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120565714 394 - 121039945 GGGTAATCTTTAAAGTATGTGAAATAACG-CCTCATCCTCGGAGGAGTCGCCTTGTTGCTTAAAGGCCCCTGGACCAGCCCTGCCC-AGAGTAAGAGCTCAGTGTCTTGTTATCAGGGACAGAGAGGACAGGACCCTCCAGTCACACACTGCACCTCTGTGACTCGAGTGACAGAGATGGCCCAGGGCTGTCCCCTCACCTGTAAAATAGTGCAGGAGCAGCACCTGCTTCACCGGGCATGCTGCAGGCAAGTGTACGTGGCACCCCGGGAGCCCAGCCCTGCACACAGGGCGCCCCCTGGGGTTGTTGTTCTTGTACGGGGCA-GGCACACAAGAGTCTTGAGTCCTCCAACCCAGCCCAAGGCTGCTGGGGCCACATGGAAATGCGGCTGTGCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179521447 385 - 180051392 GGGTAATATTTAAAGTGTGTGAAATAACA-CCTCATCCTGGGAGGGGTCACCTTGTTGCTTAAAGGCCCCTGGACCAGCTCTGCCC-AGAGTAAGAGCTCAGTGTCTTGTTATCAGGGACAGAG-----AGGACCCTCCAGTCACACACTGCACCC--ATCACTTGGGTCACAGAGGTGGCCCAGGGCTGTCCCGTCACCTGTAAAATAGTGCAGGAGCAGCACCTGCTTCACCGGGCGTGCTGCAAGCAAGTGGACGCAGCACTCTGGGAACCCAGCCCTGCACGCGCAGCACCCCCTGGGGTTGTTCTTCTTGT--GGGGCA-GGCACACAAGAGTCTGGAGTCCTCCAACCCAGCCCGGGGCTGCTGGGGCCACATGGAAATGTAGCTGTGCAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255167 385 - 181584905 GGGTAATATTTAAAGTGTGTGAAATAACA-CCTCATCCTGGGAGGGGTCACCTTGTTGCTTAAAGGCCCCTGGACCAGCTCTGCCC-AGAGTAAGAGCTCAGTGTCTTGTTATCAGGGACAGAG-----AGGACCCTCCAGTCACACACTGCACCC--ATCACTTGGGTCACAGAGGTGGCCCAGGGCTGTCCCATCACCTGTAAAATAGTGCAGGAGCAGCACCTGCTTCACCGGGCGTGCTGCAAGCAAGTGGACGCAGCACTCTGGGAACCCAGCCCTGCACGCGCAGCACCCCCTGGGGTTGTTCTTCTTGT--GGGGCA-GGCACACAAGAGTCTGGAGTCCTCCAACCCAGCCCGGGGCTGCTGGGGCCACATGGAAATGTAGCTGTGCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256355 385 -   1764207 GGGTAATATTTAAAGTGTGTGAAATAACA-CCTCATCCTGGGAGGGGTCACCTTGTTGCTTAAAGGCCCCTGGACCAGCTCTGCCC-AGAGTAAGAGCTCAGTGTCTTGTTATCAGGGACAGAG-----AGGACCCTCCAGTCACACACTGCACCC--ATCACTTGGGTCACAGAGGTGGCCCAGGGCTGTCCCGTCACCTGTAAAATAGTGCAGGAGCAGCACCTGCTTCACCGGGCGTGCTGCAAGCAAGTGGACGCAGCACTCTGGGAACCCAGCCCTGCACGCACAGCACCCCCTGGGGTTGTTCTTCTTGT--GGGGCA-GGCACACAAGAGTCTGGAGTCCTCCAACCCAGCCCGGGGCTGCTGGGGCCACATGGAAATGTAGCTGTGCAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267001 385 -  16742782 GGGTAATCTTTAAAGTATGTGAAATAACA-CCTCATCCTGGGAGGGGTCGCCTTGTTGCTTAAAGGCCCCTGGACCAGCTCTGCCC-AGAGTAAGAGCTCAGTGTCTTGTTATCAGGGACAGAG-----AGGACCCTCCAGTCACACACTGCACCC--ATCACTTGGGTCACAGAGGTGGCCCAGGGCTGTCCCGTCACCTGTAAAATAGTGCAGGAGCAGCACCTGCTTCACCGGGCGTGCTGCAAGCAAGTGGACGCAGCACTCTGGGAACCCAGCCCTGCATGCACAGCGCCCCCTGGGGTTGTTCTTCTTGC--GGGGCA-GGCACACAAGAGTCTGGAGTCCTCCAACCCAGCCCGGGGCTGCTGGGGCCACATGGAAATGTAGCTGTGCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570184 384 -  91010382 GGGTAA-CTTTAAAGTGTGTGAAATAACC-CCTCATCCTGGGAGGGGTCGCCTTGTTGCTTAAAGGCCCCTGGACCAGCTCTGCCC-AGAGTAAGAGCTCAGTGTCTTGTCATCAGGGACAGAG-----AGGACCCTCCAGTCACACACTGCACCC--ATCACTTGGGTCACAGAGGTGGCCCAGGGCTGTCCCCTCACCTGTAAAATAGTGCAGGAGCAGCACCTGCTTCACCAGGCGTGCTGCAAGCAAGTGGACGCAGCACTCTGGGAACCCAGCCCTGCACGTGGAGTGCCCCCTGGGGTTGTTCTTCTTGT--GGGGCA-GGCACACAAGAGTCTGGAGTCCTCCAACCCAGCCCGGGGCTGCTGGGGCCACATGGAAATGTAGCTGTGCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164058 383 -    438239 GGGTAATCTTTAAAGTGTGTGAAATAACA-CCTCATCCTGGGAGGGGTCGCCTTGTTGCTTAAAGGCCCCTGGACCAGCTCTGCCC-AGAGTAAGAGCTCAGTGTCTTGTTATCAGGGACAGAG-----AGGACCCTCCAGTCACACACTGCACCC--ATCACTTGGGTCACAGAGGTGGCCCAGGGCTGTCCCGTCACCTGTAAAATAGTGCAGGAGCAGTACCTGCTTCACTGGGCGTGCCGCAAGCAAGTGGACGCAGCACTCTGGGAACCCAGCCCTGCATGCGCAGCGCCCCCTGGGGTTG---TTCTTGC--GGGGCAGGGCACACAAGAGTCTGGAGTCCTCCAACCCAGCCCGGGGCTGCTGGGGCCACATGGAAATGTAGCTGTGCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      193883 385 -    514179 GGGTAATCTTTAAAGTGTGTGAAATAACA-CCTCATCCTGGGAGGGGTCGCCTTGTTGCTTAAAGGCCCCTGGACCAGCTCTGCCC-AGAGTCAGAGCTCAATGTCTTGTTATCAGGGACAGAA-----AGGACCCTCCAGTCACACACTGCAGCC--ATCACTTGGGTCACAGAGGTGGCCCAGGGCTGTCCCCTCACCTGTAAAACAGTGCAGGAGCAGCAACTGCTTCACTGGGCGTGCTGCAAGCAAGCGGACGCAGCACTCTGGGAACCCAGCCCTGCACGTGGAGCGCCCCCTGGGGTTGTTCTTCTTGC--GGGGCA-GGCACACAAGAGTCTGGAGTCCTCCAACCCAGCCCGGGGCTGCTGGGGCCACGTGGAAATGTAGCTGTGCAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203849383 382 + 204313951 GGGGAATCTTTAAAGCATGTGAAGTGACGCCCTCATCCTGGGAGG-GTCGCCTTGTGGCTTAAAGACCCCTGGACCAGCTCTGCCCAAG-GTCAGAGCTCGGTGTCTCGTTATCAGGGACAGAG-----AGGACCCTCCAGTCACACACTGCGCCT--ATCACTTGGGTCACAGAGGTGGCACAGAACTGTTCCCTCACCTGTAAAATCGTGCAGGACCAGCACCTGCTTCACCGGGAGAGCTGCAGGAAAGCTTACACAG-ACGCTGGGAGCCTGGCTCTGCACACGTGG----CCCCGGGGCTGTTCTTCTTGTACAGAGCA-GGTACACAAGGCTCTTGAGTCCTGTGACCCAGCCCAGGGCTGCTGGGGCCACGTGGAAATGCGGCTGGGCCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16009669 380 +  16417988 GGGGAATCTTTAAAGCATGTGAAGTAACGCCCTCATCCT-GGAGG-GCTGCCTTGTGGCTTAAAGGCCCCTGGACCAGCTCTGCCC-AG-GTCAGAGCTCGGTGTCGCGTTATCAGGGACAGAG-----AGGACCCTCCAGTCACACGCTGCGCCT--ATCACTTGGGTCACAGGGGTGGCACAGAGCTGTTCCCTCACCTGCAAAATCGTGCAGGAGCAGCACCTGCTTCACCGGGCGTGCTGCAGGAAAGCTCACACAG-GCGCTGGGAGCCCGGCCCTGTGCACATGG----CCCTGGGGCTGTTCTTCTTGTACAGGGCA-GGAACACAAGGCTCTTGAGTCCTGTGACCCAGCCCAGGGCTGCTGGGGCCACGTGGAAATGCGGCTGGGCCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       92974 380 +    298490 AGGGAATCTTTAAAGCATGTGAAGTAACGCCCTCGTCCTGGGAGG-GTCACCTTGTGGCGTAAAAGCCCCTGGACCAGCTCTGCCC-AG-GTCAGAGCTCGGCGTCTCCTTATCAGGGACAGAG-----AGGACCCTCCAGTCACACCCTGCACCT--ATCACTTGGGTCACAGAGGTGTCACAGAGCTGTTCCCTCACCTGTAAAATCGTGCAGGAGCAGCACCTGC-TCACCGGGCGTGCTGCAGGAAAGCTTACACAG-GCGCTGGGAGCCCAGCCCTGCGCGCGTGG----CCCTGGGGCTGTTCCTCTTGTACGGGGCA-GACACACAAGGCTCTTGAGTCCTGTGACCCAGCCCGGGGCTGCTGGGGCCACGTGGAAATGCGGCTGGGCCC
i cebCap1.NW_016108158v1   C 0 I 41
s aotNan1.NW_018503740v1    25424592 381 -  25620257 GGGGAATCTTTACAGCACGTGAAGCAACGCCCTCACCCTGGGAGG-TTCGCCTTGCGGCTTAAAGGCCCCCGGACCAGCTCGGCCC-AG-GTCAGAGCTCGGTGTCTCATTATCAGGGACAGAG-----AGGACCCTCCAGTCACACACCGTGCCT--ATCACTTGGGTCACAGAGGTGGCTCAGAGCTGTTCCCTCCCCTGTAAAATCGTGCAGGAGCAGCACCTGCTTCACCGGGCGTGCTGCAGGAAAGCTTACACAG-GCGCTGGGAGCCCGGCCCTGCGCACGTGG----CCCTGGGGCTGTTCTTCTTGTACGGGGCA-GGCACACAAGGCTCTTGAGTCCTGTGACCTAGCCTGGGGCTGCCGGGGCCACGTGGAAATGTGGCTGGGCCC
i aotNan1.NW_018503740v1   I 18 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=85969.000000
s hg38.chr5_KI270793v1_alt     61055 15 +    126136 CTCTGC-GGGGGCCTG
s panTro5.chr5             181328211 16 - 181907262 CTCTGCGGGGGGCCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183048985 16 - 183735486 CTCTGCGGGGGGCCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136264 15 +    698298 CTCTGC-GGGGGCCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566108 16 - 121039945 CTCTGCGGGGGGCCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179521832 15 - 180051392 CTCTGC-AGGGGCCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255552 15 - 181584905 CTCTGC-AGGGGCCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256740 15 -   1764207 CTCTGC-AGGGGCCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267386 15 -  16742782 CTCTGC-AGGGGCCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570568 15 -  91010382 CTCTGC-AGGGGCCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164441 15 -    438239 CTCTGC-AGGGGCCTG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203849765 15 + 204313951 ATCCTC-GGGGACCCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16010049 15 +  16417988 ATCCAC-AGGGACCCA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25424973 15 -  25620257 ATCCGT-GGGGACCTG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e colAng1.NW_012118799v1      194268  0 -    514179 C

a score=7098.000000
s hg38.chr5_KI270793v1_alt     61070 1 +    126136 T
s panTro5.chr5             181328227 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049001 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136279 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566124 1 - 121039945 T
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179521847 1 - 180051392 T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255567 1 - 181584905 T
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256755 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267401 1 -  16742782 T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570583 1 -  91010382 T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164456 1 -    438239 T
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203849780 1 + 204313951 T
i calJac3.chr2             C 0 I 18
s aotNan1.NW_018503740v1    25424988 1 -  25620257 T
i aotNan1.NW_018503740v1   C 0 I 49
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e canFam3.chr34             11719112 2836 +  42124431 I
e colAng1.NW_012118799v1      194268 0 -    514179 C

a score=58914.000000
s hg38.chr5_KI270793v1_alt     61071 14 +    126136 GTCGGCGCCGTCCC
s panTro5.chr5             181328228 14 - 181907262 GTCGGCGCCCTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049002 14 - 183735486 GTTGGCGCCGTCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136280 14 +    698298 GTCGGCGCCGTCGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566125 14 - 121039945 GTTGGCGCCATCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179521848 14 - 180051392 GTTGGCGCCATCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255568 14 - 181584905 GTTGGCGCCATCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256756 14 -   1764207 GTTGGCGCCATCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267402 14 -  16742782 GTTGGCGCCATCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570584 14 -  91010382 GTCCGCGCCATCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164457 14 -    438239 GTCGGCGCCATCCC
i manLeu1.NW_012110441v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e colAng1.NW_012118799v1      194268  0 -    514179 C

a score=-350.000000
s hg38.chr5_KI270793v1_alt     61085 1 +    126136 C
s panTro5.chr5             181328242 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049016 1 - 183735486 C
i panPan2.chr5             C 0 I 1
s gorGor5.CYUI01015805v1      136294 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566139 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C

a score=5730.000000
s hg38.chr5_KI270793v1_alt     61086 6 +    126136 TCAGCT
s panTro5.chr5             181328243 6 - 181907262 TCAGCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049018 6 - 183735486 TCAGCT
i panPan2.chr5             I 1 C 0
s gorGor5.CYUI01015805v1      136295 6 +    698298 TCAGCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566140 6 - 121039945 TCAGCT
i nomLeu3.chr6             C 0 I 16
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C

a score=5962.000000
s hg38.chr5_KI270793v1_alt     61092 15 +    126136 GAACCCCCCTGCGGG
s panTro5.chr5             181328249 15 - 181907262 GTGCATCTCTGCGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049024 15 - 183735486 GCGCACCTCTGCGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136301 15 +    698298 GCGCCCCTCTGCGGG
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566146 16 - 121039945 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C

a score=15420.000000
s hg38.chr5_KI270793v1_alt     61107 22 +    126136 G-GCCTGTGTCGGCGCCGTCCCC
s panTro5.chr5             181328264 22 - 181907262 G-GCCTATGTTGGCGCCGTCCCC
i panTro5.chr5             C 0 I 66
s panPan2.chr5             183049039 23 - 183735486 GAGCCTGTGTTGGCGCCGTCCCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136316 22 +    698298 G-GCCTGTGTCGGCGCCGTCCCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566162 22 - 121039945 -AGCCTGTGTTGGCGCCGTCCTG
i nomLeu3.chr6             I 16 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C

a score=5008.000000
s hg38.chr5_KI270793v1_alt     61129 30 +    126136 TCAGCCGCGCCCCTCTGC-GGGGGCCTGTGT
s panPan2.chr5             183049062 30 - 183735486 TCAGCTGCGCACCTCTGC-GGGGTCCTGTGT
i panPan2.chr5             C 0 T 75
s gorGor5.CYUI01015805v1      136338  9 +    698298 TCAGCTGCG----------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566184 31 - 121039945 TCAGCTGTGCCCCTCTGCGGGGGGCCTGTGT
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181328286 66 - 181907262 I
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C

a score=1605.000000
s hg38.chr5_KI270793v1_alt     61159 35 +    126136 CGTCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGG-
s nomLeu3.chr6             120566215 36 - 121039945 TGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGAA
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181328286 66 - 181907262 I
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e gorGor5.CYUI01015805v1      136347  0 +    698298 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=8779.000000
s hg38.chr5_KI270793v1_alt     61194 44 +    126136 GCCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGGG-
s panTro5.chr5             181328352 44 - 181907262 GCCTGTGTTGTCGCCCTCTCGTCAGCTGTGCATCTCTGCGGGGG-
i panTro5.chr5             I 66 C 0
s gorGor5.CYUI01015805v1      136347 14 +    698298 ------------------------------CCCCTCTGCGGGGG-
i gorGor5.CYUI01015805v1   C 0 T 86
s nomLeu3.chr6             120566251 45 - 121039945 GCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=16906.000000
s hg38.chr5_KI270793v1_alt     61238 42 +    126136 CCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGG-
s panTro5.chr5             181328396 42 - 181907262 CCTATGTTGGCGCCCTCCCGTCAGCTGTGCCCCTCTGCGGGG-
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136275 42 +    698298 CCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGGG-
i gorGor5.CYUI01015805v1   T 86 C 0
s nomLeu3.chr6             120566296 43 - 121039945 CCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGG
i nomLeu3.chr6             C 0 T 219
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=300.000000
s hg38.chr5_KI270793v1_alt     61280 1 +    126136 G
s panTro5.chr5             181328438 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136317 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566339 219 - 121039945 T
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=23848.000000
s hg38.chr5_KI270793v1_alt     61281 63 +    126136 CCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCG
s panTro5.chr5             181328439 63 - 181907262 GCTGTGTCTGCGCCCTCCTGTCAGCTGCGCCCCTCTGC-GGGGGGCTGTGTCTGTGCCCTCCTG
i panTro5.chr5             C 0 T 216
s gorGor5.CYUI01015805v1      136318 64 +    698298 CCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGCGGGGGGCCTGTGTCGGCGCCGTCGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566120 64 - 121039945 CCTGTGTTGGCGCCATCCTGTCAGCTGTGCCCCTCTGCGGGAAGCCTGTGTTGGCGCCGTCCTG
i nomLeu3.chr6             T 219 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=22232.000000
s hg38.chr5_KI270793v1_alt     61344 52 +    126136 TCAGCCGCGCCCCTCTGC-GGGGGCCTGTGTCGTCGCCGTCCCGTCAGCCGAG
s panTro5.chr5             181328286 52 - 181907262 TCAGCTGTGCACCTCTGC-GGGGGCCTGTGTCGGCGCCCTCCCGTCAGCCGCA
i panTro5.chr5             T 216 C 0
s gorGor5.CYUI01015805v1      136382 52 +    698298 TCAGCTGCGCCCCTCTGC-AGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCG
i gorGor5.CYUI01015805v1   C 0 T 173
s nomLeu3.chr6             120566184 53 - 121039945 TCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=8758.000000
s hg38.chr5_KI270793v1_alt     61396 41 +    126136 CCCCTCTGCGGGGAGCCTGTGTCGTCGCCGTCCCCTGAGCT
s panTro5.chr5             181328338 41 - 181907262 CACCTCTGCGGGGAGCCTGTGTTGTCGCCCTCTCGTCAGCT
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120566237 41 - 121039945 CCCCTCTGCGGGAAGCCTGTGTTGGCGCCGTCCTGTCAGCT
i nomLeu3.chr6             C 0 I 44
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e gorGor5.CYUI01015805v1      136434 173 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=183.000000
s hg38.chr5_KI270793v1_alt     61437 3 +    126136 GAA
s panTro5.chr5             181328379 3 - 181907262 GTG
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120566322 3 - 121039945 GTG
i nomLeu3.chr6             I 44 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e gorGor5.CYUI01015805v1      136434 173 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=17848.000000
s hg38.chr5_KI270793v1_alt     61440 43 +    126136 CCCCTCTGC-GGGGGCCTGTGTCGTCGCCGTCCCGTCAGCCGAG
s panTro5.chr5             181328382 43 - 181907262 CATCTCTGC-GGGGGCCTATGTTGGCGCCCTCCCGTCAGCTGTG
i panTro5.chr5             C 0 T 218
s gorGor5.CYUI01015805v1      136261 43 +    698298 CCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCG
i gorGor5.CYUI01015805v1   T 173 C 0
s nomLeu3.chr6             120566325 44 - 121039945 CCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=4146.000000
s hg38.chr5_KI270793v1_alt     61483 14 +    126136 CCCCTCTGCGGGGG
s gorGor5.CYUI01015805v1      136304 14 +    698298 CCCCTCTGCGGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566369 14 - 121039945 CCCCTCTGCGGGGG
i nomLeu3.chr6             C 0 T 263
e panTro5.chr5             181328425 218 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=5591.000000
s hg38.chr5_KI270793v1_alt     61497 28 +    126136 CCTGTGTCGTCGCCGTCCCCTGAGCCGC
s gorGor5.CYUI01015805v1      136318 28 +    698298 CCTGTGTCGGCGCCGTCCCGTCAGCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566120 28 - 121039945 CCTGTGTTGGCGCCATCCTGTCAGCTGT
i nomLeu3.chr6             T 263 C 0
e panTro5.chr5             181328425 218 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=7966.000000
s hg38.chr5_KI270793v1_alt     61525 15 +    126136 GCCCCTCTGCGGGGA
s panTro5.chr5             181328207 15 - 181907262 GCCCCTCTGCGGGGG
i panTro5.chr5             T 218 C 0
s gorGor5.CYUI01015805v1      136346 15 +    698298 GCCCCTCTGCGGGGG
i gorGor5.CYUI01015805v1   C 0 I 129
s nomLeu3.chr6             120566148 15 - 121039945 GCCCCTCTGCGGGAA
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=69708.000000
s hg38.chr5_KI270793v1_alt     61540 157 +    126136 GCCTGTGTCGGCGCCGTCCCCTCAGCTGAACCCCTCTGC-GGGGGCCTGTGTCGTCGCCGTCCCGTCAGCCGCGCCCCTCTGCGGG-GGCCTGTGTCGTCGCCGTCCCGTCAGCCGAGCCCCTCTGCGGGGAGCCTGTGTCGTCGCCGTCCCCTGAGCT
s panTro5.chr5             181328222 157 - 181907262 GCCTGTGTCGGCGCCCTCCCGTCAGCTGTGCATCTCTGC-GGGGGCCTATGTTGGCGCCGTCCCCTCAGCTGTGCACCTCTGCGGG-GGCCTGTGTCGGCGCCCTCCCGTCAGCCGCACACCTCTGCGGGGAGCCTGTGTTGTCGCCCTCTCGTCAGCT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136490 157 +    698298 GCCTGTGTTGGTGCCGTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTTGGTGCCGTCTCGTCAGCTGCGCCCCTCTGCGGG-GGCCTGTGTTGGTGCCGTCCCGTCAGCTGCGCCCCTCTGCGGGGGGCCTGTGTCGGCGCCGTCCCGTCAGCT
i gorGor5.CYUI01015805v1   I 129 I 44
s nomLeu3.chr6             120566163 159 - 121039945 GCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGAAGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCT
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989  49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354  41 +    298490 I
e saiBol1.JH378155          16010064   0 +  16417988 C
e calJac3.chr2             203849781  18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471   0 -    438239 C
e chlSab2.chr4              90570598   0 -  91010382 C
e cerAty1.NW_012009470v1      267416   0 -  16742782 C
e colAng1.NW_012118799v1      194268   0 -    514179 C
e macNem1.NW_012012389v1      256770   0 -   1764207 C
e macFas5.chr6             181255582   0 - 181584905 C
e rheMac8.chr6             179521862   0 - 180051392 C
e panPan2.chr5             183049092  75 - 183735486 T

a score=33908.000000
s hg38.chr5_KI270793v1_alt     61697 86 +    126136 GAACCCCTCTGC-GGGGGCCTGTGTCGTCGCCGTCCCGTCAGCCGAGCCCCTCTGC-GGGGGCCTGTGTCGTCGCCGTCCCCTGAGCC
s panTro5.chr5             181328379 86 - 181907262 GTGCATCTCTGC-GGGGGCCTATGTTGGCGCCCTCCCGTCAGCTGTGCCCCTCTGC-GGGGGGCTGTGTCTGCGCCCTCCTGTCAGCT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136691 86 +    698298 GCGCTCCTCTGC-GGGGGCCTGTGTTGGCGCCGTCGGGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTTGGCGCCGTCGGGTCAGCT
i gorGor5.CYUI01015805v1   I 44 T 130
s nomLeu3.chr6             120566322 88 - 121039945 GTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCT
i nomLeu3.chr6             C 0 T 264
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=807.000000
s hg38.chr5_KI270793v1_alt     61783 2 +    126136 GC
s panTro5.chr5             181328465 2 - 181907262 GC
i panTro5.chr5             C 0 T 260
s gorGor5.CYUI01015805v1      136647 2 +    698298 GC
i gorGor5.CYUI01015805v1   T 130 C 0
s nomLeu3.chr6             120566146 2 - 121039945 GT
i nomLeu3.chr6             T 264 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=57196.000000
s hg38.chr5_KI270793v1_alt     61785 124 +    126136 GCCCCTCTGCGGGGAGCCTGTGTCGGCGCCGTCCCGTCAGCTGAACCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGAACCCCTCTGCGGG-GGCCTGTGTCGGCGCCGTCCCGTC
s panTro5.chr5             181328207 124 - 181907262 GCCCCTCTGCGGGGGGCCTGTGTCGGCGCCCTCCCGTCAGCTGTGCATCTCTGC-GGGGGCCTATGTTGGCGCCGTCCCCTCAGCTGTGCACCTCTGCGGG-GGCCTGTGTCGGCGCCCTCCCGTC
i panTro5.chr5             T 260 C 0
s gorGor5.CYUI01015805v1      136649 124 +    698298 GCCCCTCTGCGGGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCTCCTCTGC-GGGGGCCTGTGTTGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGG-GGCCTGTGTTGGCGCCGTCGGGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566148 126 - 121039945 GCCCCTCTGCGGGAAGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGAAGCCTGTGTTGGCGCCGTCCTGTC
i nomLeu3.chr6             C 0 I 264
e aotNan1.NW_018503740v1    25424989  49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354  41 +    298490 I
e saiBol1.JH378155          16010064   0 +  16417988 C
e calJac3.chr2             203849781  18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471   0 -    438239 C
e chlSab2.chr4              90570598   0 -  91010382 C
e cerAty1.NW_012009470v1      267416   0 -  16742782 C
e colAng1.NW_012118799v1      194268   0 -    514179 C
e macNem1.NW_012012389v1      256770   0 -   1764207 C
e macFas5.chr6             181255582   0 - 181584905 C
e rheMac8.chr6             179521862   0 - 180051392 C
e panPan2.chr5             183049092  75 - 183735486 T

a score=6537.000000
s hg38.chr5_KI270793v1_alt     61909 16 +    126136 AGCTGAACCCCTCTGC
s panTro5.chr5             181328331 16 - 181907262 AGCCGCACACCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136773 16 +    698298 AGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 I 131
s nomLeu3.chr6             120566538 16 - 121039945 AGCTGTGCCCCTCTGT
i nomLeu3.chr6             I 264 I 1
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=2400.000000
s hg38.chr5_KI270793v1_alt     61925 4 +    126136 GGGG
s panTro5.chr5             181328347 4 - 181907262 GGGG
i panTro5.chr5             C 0 I 130
s gorGor5.CYUI01015805v1      136920 4 +    698298 GGGG
i gorGor5.CYUI01015805v1   I 131 C 0
s nomLeu3.chr6             120566555 4 - 121039945 GGGG
i nomLeu3.chr6             I 1 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=10995.000000
s hg38.chr5_KI270793v1_alt     61929 30 +    126136 GCCTGTGTCGGCGCCGTCCCCTGAGCTGAA
s panTro5.chr5             181328481 30 - 181907262 GGCTGTGTCTGTGCCCTCCTGTCAGCTGCG
i panTro5.chr5             I 130 C 0
s gorGor5.CYUI01015805v1      136924 30 +    698298 GCCTGTGTTGGCGCCGTCCCGTCAGCTGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566559 30 - 121039945 GCCTGTGTTGGCGCCGTCCTGTCAGCTGTT
i nomLeu3.chr6             C 0 I 264
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=4518.000000
s hg38.chr5_KI270793v1_alt     61959 12 +    126136 CCCCTCTGC-GGG
s panTro5.chr5             181328511 13 - 181907262 CCCCTATGCGGGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136954 12 +    698298 CCCCTCTGC-GGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566853 12 - 121039945 CACCTCTGC-GGG
i nomLeu3.chr6             I 264 I 56
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=2957.000000
s hg38.chr5_KI270793v1_alt     61971 11 +    126136 GGCCTGTGTCG
s panTro5.chr5             181328524 11 - 181907262 GGCCTGTGTTG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136966 11 +    698298 GGCCTGTGTCG
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566865 56 - 121039945 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=9226.000000
s hg38.chr5_KI270793v1_alt     61982 29 +    126136 TCGCCGTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328535 29 - 181907262 TCGCCCTCCTGTCAGCTGCGCCCCTATGC
i panTro5.chr5             C 0 T 212
s gorGor5.CYUI01015805v1      136977 29 +    698298 GCGCCGTCGGGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566921 29 - 121039945 GCGCCATCCTGTCAGCTGTTCACCTCTGC
i nomLeu3.chr6             I 56 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=7759.000000
s hg38.chr5_KI270793v1_alt     62011 47 +    126136 -GGGGGCCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGG-
s gorGor5.CYUI01015805v1      137006 47 +    698298 -GGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGGG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566950 49 - 121039945 GGGAAGCCTGTGTTGGCGCCATCCTGTCAGTTGTGCACCTCTGTGGGGG
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181328564 212 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=5418.000000
s hg38.chr5_KI270793v1_alt     62058 10 +    126136 GCCTGTGTCG
s panTro5.chr5             181328352 10 - 181907262 GCCTGTGTTG
i panTro5.chr5             T 212 C 0
s gorGor5.CYUI01015805v1      137053 10 +    698298 GCCTGTGTTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566999 10 - 121039945 GCCTGTGTTG
i nomLeu3.chr6             C 0 T 143
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=4707.000000
s hg38.chr5_KI270793v1_alt     62068 29 +    126136 TCGCCGTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328362 29 - 181907262 TCGCCCTCTCGTCAGCTGTGCATCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137063 29 +    698298 GTGCCGTCCCGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 T 302
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 143 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=900.000000
s hg38.chr5_KI270793v1_alt     62097 3 +    126136 GGG
s panTro5.chr5             181328391 3 - 181907262 GGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136790 3 +    698298 GGG
i gorGor5.CYUI01015805v1   T 302 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 143 - 121039945 T
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=35881.000000
s hg38.chr5_KI270793v1_alt     62100 83 +    126136 GGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCCTGAGCTGAGCCCCTCTGC
s panTro5.chr5             181328394 83 - 181907262 GGCCTATGTTGGCGCCCTCCCGTCAGCTGTGCCCCTCTGC-GGGGGGCTGTGTCTGCGCCCTCCTGTCAGCTGCGCCCCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136793 83 +    698298 GGCCTGTGTTGGCGCCGTCGGGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTTGGTGCCGTCTCGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 I 302
s nomLeu3.chr6             120566866 84 - 121039945 AGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGC
i nomLeu3.chr6             T 143 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=22476.000000
s hg38.chr5_KI270793v1_alt     62183 57 +    126136 -GGGGGCCTGTGTCGTCGCCGTCCCCTGAGCTGAGCCCCTCTGC-GGGGGCCTGTGTCG
s panTro5.chr5             181328477 58 - 181907262 -GGGGGGCTGTGTCTGTGCCCTCCTGTCAGCTGCGCCCCTATGCGGGGGGCCTGTGTTG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137178 58 +    698298 -GGGGGCCTGTGTTGGCGCCGTCCCGTCAGCTGCGCCCCTCTGCGGGGGGCCTGTGTCG
i gorGor5.CYUI01015805v1   I 302 C 0
s nomLeu3.chr6             120566950 59 - 121039945 GGGAAGCCTGTGTTGGCGCCATCCTGTCAGTTGTGCACCTCTGTGGGGGGCCTGTGTTG
i nomLeu3.chr6             C 0 T 102
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=4773.000000
s hg38.chr5_KI270793v1_alt     62240 29 +    126136 TCGCCGTCCCCTGAGCTGAGCCCCTCTGC-
s panTro5.chr5             181328535 30 - 181907262 TCGCCCTCCTGTCAGCTGCGCCCCTATGCG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137236 29 +    698298 GCGCCGTCCCGTCAGCTGCGCCCCTCTGC-
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 102 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=40943.000000
s hg38.chr5_KI270793v1_alt     62269 100 +    126136 GGGGGCCTGTGTCGGCGCCGTCCCCTGAGCTGAGCCCCTCTGCGGG-GGCCTGTGTCGGCGCCGTCCCCTGAGCTGAACCCCTCTGC-GGGGGCCTGTGTCG
s panTro5.chr5             181328565 100 - 181907262 GGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCATCTCTGCGGG-GGGCTGTGTTGTCGCCCTCCCGTCAGCTGTGCACCTCTGC-GGGGGCCTGTGTTG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137265 101 +    698298 GGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGG-GGCCTGTGTTGGCGCCGTCCCGTCAGCTGCGCCCCTCTGCGGGGGGCCTGTGTCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566907 102 - 121039945 GGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGCGGGAAGCCTGTGTTGGCGCCATCCTGTCAGTTGTGCACCTCTGTGGGGGGCCTGTGTTG
i nomLeu3.chr6             T 102 T 220
e aotNan1.NW_018503740v1    25424989  49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354  41 +    298490 I
e saiBol1.JH378155          16010064   0 +  16417988 C
e calJac3.chr2             203849781  18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471   0 -    438239 C
e chlSab2.chr4              90570598   0 -  91010382 C
e cerAty1.NW_012009470v1      267416   0 -  16742782 C
e colAng1.NW_012118799v1      194268   0 -    514179 C
e macNem1.NW_012012389v1      256770   0 -   1764207 C
e macFas5.chr6             181255582   0 - 181584905 C
e rheMac8.chr6             179521862   0 - 180051392 C
e panPan2.chr5             183049092  75 - 183735486 T

a score=4374.000000
s hg38.chr5_KI270793v1_alt     62369 10 +    126136 GCGCCGTCCC
s panTro5.chr5             181328665 10 - 181907262 GTGCTGTCCC
i panTro5.chr5             C 0 T 467
s gorGor5.CYUI01015805v1      137366 10 +    698298 GCGCCGTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566789 10 - 121039945 GCGCCATCCT
i nomLeu3.chr6             T 220 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=39233.000000
s hg38.chr5_KI270793v1_alt     62379 205 +    126136 CTGAGCTGAGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCCTGAGCTGAACCCCTCTGCGGG-GGCCTGTGTCGGCGCCGTCCCCTGAGCTGAGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCCTGAGCTGAACCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCCTGAGCTGAGCCCCTCTGC-GGGGGCCTGTGTCG
s gorGor5.CYUI01015805v1      137376 209 +    698298 GTCAGCTGCGCTCCTCTGCGGGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGG-GGCCTGTGTTGGTGCCGTCTCGTCAGCTGCGCCCCTCTGCGGGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCGGGTCAGCTGCGCTCCTCTGCGGGGGGCCTGTGTTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566799 210 - 121039945 GTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTTCACCTCTGCGGGAAGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGCGGGAAGCCTGTGTTGGCGCCATCCTGTCAGTTGTGCACCTCTGTGGGGGGCCTGTGTTG
i nomLeu3.chr6             C 0 T 88
e panTro5.chr5             181328675 467 - 181907262 T
e aotNan1.NW_018503740v1    25424989  49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354  41 +    298490 I
e saiBol1.JH378155          16010064   0 +  16417988 C
e calJac3.chr2             203849781  18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471   0 -    438239 C
e chlSab2.chr4              90570598   0 -  91010382 C
e cerAty1.NW_012009470v1      267416   0 -  16742782 C
e colAng1.NW_012118799v1      194268   0 -    514179 C
e macNem1.NW_012012389v1      256770   0 -   1764207 C
e macFas5.chr6             181255582   0 - 181584905 C
e rheMac8.chr6             179521862   0 - 180051392 C
e panPan2.chr5             183049092  75 - 183735486 T

a score=2574.000000
s hg38.chr5_KI270793v1_alt     62584 20 +    126136 GCGCCGTCCCCTGAGCTGAA
s gorGor5.CYUI01015805v1      137585 20 +    698298 GCGCCGTCGGGTCAGCTGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566921 20 - 121039945 GCGCCATCCTGTCAGCTGTT
i nomLeu3.chr6             T 88 C 0
e panTro5.chr5             181328675 467 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=21329.000000
s hg38.chr5_KI270793v1_alt     62604 56 +    126136 CCCCTCTGCGGGGG-CCTGTGTCGTCGCCGTCCCCTGAGCTGAGCCCCTCTGC-GGGG-
s panTro5.chr5             181328208 57 - 181907262 CCCCTCTGCGGGGGGCCTGTGTCGGCGCCCTCCCGTCAGCTGTGCATCTCTGC-GGGG-
i panTro5.chr5             T 467 C 0
s gorGor5.CYUI01015805v1      137605 58 +    698298 CCCCTCTGCGGGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGCGGGGG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566941 58 - 121039945 CACCTCTGCGGGAAGCCTGTGTTGGCGCCATCCTGTCAGTTGTGCACCTCTGT-GGGGG
i nomLeu3.chr6             C 0 T 264
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=10396.000000
s hg38.chr5_KI270793v1_alt     62660 24 +    126136 GCCTGTGTCGGCGCTGTCCCCTGA
s panTro5.chr5             181328265 24 - 181907262 GCCTATGTTGGCGCCGTCCCCTCA
i panTro5.chr5             C 0 T 87
s gorGor5.CYUI01015805v1      137663 24 +    698298 GCCTGTGTCGGCGCCGTCCCGTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566735 24 - 121039945 GCCTGTGTTGGCGCCATCCTGTCA
i nomLeu3.chr6             T 264 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=6741.000000
s hg38.chr5_KI270793v1_alt     62684 15 +    126136 GCTGAGCCCCTCTGC
s panTro5.chr5             181328202 15 - 181907262 GCTGTGCCCCTCTGC
i panTro5.chr5             T 87 C 0
s gorGor5.CYUI01015805v1      137687 15 +    698298 GCCGTGCACCTCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566759 15 - 121039945 GCTGTGCCCCTCTGT
i nomLeu3.chr6             C 0 T 43
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=39453.000000
s hg38.chr5_KI270793v1_alt     62699  98 +    126136 GGGGG-CCTGTGTCGGCGCCGTCCCGTCAGCTGAGCCCCTCTGCGGGG-GCCTGTGTCGGCGCCGTCCCCTGAGCTGAACCCCTCTGC-GGGGGCCTGTGT
s panTro5.chr5             181328217  99 - 181907262 GGGGGGCCTGTGTCGGCGCCCTCCCGTCAGCTGTGCATCTCTGCGGGG-GCCTATGTTGGCGCCGTCCCCTCAGCTGTGCACCTCTGC-GGGGGCCTGTGT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137702  99 +    698298 GGGGG-CCTGTCTTGGCGCCCTCCCGTCAGCTGCACACCTCTGCGGGGAGCCTGTCTTGGCGCCCTCCCGTCAGCTGTACATCTCTGC-GGGGTCCTGTGT
i gorGor5.CYUI01015805v1   C 0 T 174
s nomLeu3.chr6             120566731 100 - 121039945 GGAAG-CCTGTGTTGGCGCCATCCTGTCAGCTGTGCCCCTCTGTGGGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGT
i nomLeu3.chr6             T 43 C 0
e aotNan1.NW_018503740v1    25424989  49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354  41 +    298490 I
e saiBol1.JH378155          16010064   0 +  16417988 C
e calJac3.chr2             203849781  18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471   0 -    438239 C
e chlSab2.chr4              90570598   0 -  91010382 C
e cerAty1.NW_012009470v1      267416   0 -  16742782 C
e colAng1.NW_012118799v1      194268   0 -    514179 C
e macNem1.NW_012012389v1      256770   0 -   1764207 C
e macFas5.chr6             181255582   0 - 181584905 C
e rheMac8.chr6             179521862   0 - 180051392 C
e panPan2.chr5             183049092  75 - 183735486 T

a score=12465.000000
s hg38.chr5_KI270793v1_alt     62797 35 +    126136 CGTCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGG-
s panTro5.chr5             181328316 35 - 181907262 CGGCGCCCTCCCGTCAGCCGCACACCTCTGCGGGG-
i panTro5.chr5             C 0 T 143
s gorGor5.CYUI01015805v1      137627 35 +    698298 CGGCGCCGTCCCGTCAGCTGCGCCCCTCTGCGGGG-
i gorGor5.CYUI01015805v1   T 174 I 1
s nomLeu3.chr6             120566831 36 - 121039945 TGGCGCCGTCCTGTCAGCTGTTCACCTCTGCGGGAA
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=22067.000000
s hg38.chr5_KI270793v1_alt     62832 116 +    126136 GCCTGTGTCGGCGCCGTCCCCTGAGCTGAACCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGG-GCCTGTGTCGGCGCCGTCCCCTGAGCTGAA
s gorGor5.CYUI01015805v1      137663 117 +    698298 GCCTGTGTCGGCGCCGTCCCGTCAGCCGTGCACCTCTGC-GGGGGCCTGTCTTGGCGCCCTCCCGTCAGCTGCACACCTCTGCGGGGAGCCTGTCTTGGCGCCCTCCCGTCAGCTGTA
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6             120566867 118 - 121039945 GCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGCGGGAAGCCTGTGTTGGCGCCATCCTGTCAGTTGTG
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181328351 143 - 181907262 T
e aotNan1.NW_018503740v1    25424989  49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354  41 +    298490 I
e saiBol1.JH378155          16010064   0 +  16417988 C
e calJac3.chr2             203849781  18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471   0 -    438239 C
e chlSab2.chr4              90570598   0 -  91010382 C
e cerAty1.NW_012009470v1      267416   0 -  16742782 C
e colAng1.NW_012118799v1      194268   0 -    514179 C
e macNem1.NW_012012389v1      256770   0 -   1764207 C
e macFas5.chr6             181255582   0 - 181584905 C
e rheMac8.chr6             179521862   0 - 180051392 C
e panPan2.chr5             183049092  75 - 183735486 T

a score=9084.000000
s hg38.chr5_KI270793v1_alt     62948 23 +    126136 CCCCTCTGCGGGGG-CCTGTGTCG
s panTro5.chr5             181328208 24 - 181907262 CCCCTCTGCGGGGGGCCTGTGTCG
i panTro5.chr5             T 143 C 0
s gorGor5.CYUI01015805v1      137780 23 +    698298 CATCTCTGCGGGGT-CCTGTGTTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566985 24 - 121039945 CACCTCTGTGGGGGGCCTGTGTTG
i nomLeu3.chr6             C 0 T 660
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=4092.000000
s hg38.chr5_KI270793v1_alt     62971 10 +    126136 GCGCCGTCCC
s panTro5.chr5             181328232 10 - 181907262 GCGCCCTCCC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137803 10 +    698298 GTGCTGTCCC
i gorGor5.CYUI01015805v1   C 0 T 869
s nomLeu3.chr6             120566349 10 - 121039945 GCGCCGTCCT
i nomLeu3.chr6             T 660 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=10214.000000
s hg38.chr5_KI270793v1_alt     62981 23 +    126136 CTGAGCTGAGCCCCTCTGCGGGG
s panTro5.chr5             181328242 23 - 181907262 GTCAGCTGTGCATCTCTGCGGGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136944 23 +    698298 GTCAGCTGCGCCCCTCTGCGGGG
i gorGor5.CYUI01015805v1   T 869 C 0
s nomLeu3.chr6             120566359 23 - 121039945 GTCAGCTGTGCCCCTCTGCGGGG
i nomLeu3.chr6             C 0 I 207
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=4452.000000
s hg38.chr5_KI270793v1_alt     63004 24 +    126136 GCCTGTGTCGGCGCTGTCCCCTGA
s panTro5.chr5             181328265 24 - 181907262 GCCTATGTTGGCGCCGTCCCCTCA
i panTro5.chr5             C 0 T 87
s gorGor5.CYUI01015805v1      136967 24 +    698298 GCCTGTGTCGGCGCCGTCGGGTCA
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566382 207 - 121039945 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=1205.000000
s hg38.chr5_KI270793v1_alt     63028 6 +    126136 GCTGAG
s panTro5.chr5             181328202 6 - 181907262 GCTGTG
i panTro5.chr5             T 87 C 0
s gorGor5.CYUI01015805v1      136991 6 +    698298 GCTGCG
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566382 207 - 121039945 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=4650.000000
s hg38.chr5_KI270793v1_alt     63034 9 +    126136 CCCCTCTGC
s panTro5.chr5             181328208 9 - 181907262 CCCCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136997 9 +    698298 CCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 T 129
s nomLeu3.chr6             120566589 9 - 121039945 CACCTCTGC
i nomLeu3.chr6             I 207 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=14129.000000
s hg38.chr5_KI270793v1_alt     63043 34 +    126136 -GGGGG-CCTGTGTCGGCGCCGTCCCGTCAGCTGAA
s panTro5.chr5             181328217 35 - 181907262 -GGGGGGCCTGTGTCGGCGCCCTCCCGTCAGCTGTG
i panTro5.chr5             C 0 I 14
s gorGor5.CYUI01015805v1      136877 34 +    698298 -GGGGG-CCTGTGTCGGCGCCGTCGGGTCAGCTGCG
i gorGor5.CYUI01015805v1   T 129 C 0
s nomLeu3.chr6             120566598 35 - 121039945 GGGGGG-CCTGTGTTGGCGCCGTCCTGTCAGCTGTT
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=2518.000000
s hg38.chr5_KI270793v1_alt     63077 10 +    126136 CCCCTCTGCG
s gorGor5.CYUI01015805v1      136911 10 +    698298 CCCCTCTGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566633 10 - 121039945 CACCTCTGCG
i nomLeu3.chr6             C 0 I 45
e panTro5.chr5             181328252 14 - 181907262 I
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=1200.000000
s hg38.chr5_KI270793v1_alt     63087 4 +    126136 GGGG
s gorGor5.CYUI01015805v1      136921 4 +    698298 GGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566688 4 - 121039945 GGGG
i nomLeu3.chr6             I 45 C 0
e panTro5.chr5             181328252 14 - 181907262 I
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=33933.000000
s hg38.chr5_KI270793v1_alt     63091 85 +    126136 CCTGTGTCGGCGCCGTCCCCTGAGCTGAGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGG-
s panTro5.chr5             181328266 85 - 181907262 CCTATGTTGGCGCCGTCCCCTCAGCTGTGCACCTCTGC-GGGGGCCTGTGTCGGCGCCCTCCCGTCAGCCGCACACCTCTGCGGGG-
i panTro5.chr5             I 14 T 149
s gorGor5.CYUI01015805v1      136925 85 +    698298 CCTGTGTTGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGGG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566692 87 - 121039945 CCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGCAGGAAGCCTGTGTTGGCGCCATCCTGTCAGCTGTGCCCCTCTGTGGGGG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=8183.000000
s hg38.chr5_KI270793v1_alt     63176 39 +    126136 GCCTGTGTCGGCGCCGTCCCCTGAGCTGAACCCCTCTGC
s gorGor5.CYUI01015805v1      137010 39 +    698298 GCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566779 39 - 121039945 GCCTGTGTTGGCGCCATCCTGTCAGCTGTGCCCCTCTGC
i nomLeu3.chr6             C 0 T 567
e panTro5.chr5             181328351 149 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=400.000000
s hg38.chr5_KI270793v1_alt     63215 4 +    126136 GGGG
s gorGor5.CYUI01015805v1      137049 4 +    698298 GGGG
i gorGor5.CYUI01015805v1   C 0 C 0
e panTro5.chr5             181328351 149 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566818 567 - 121039945 T
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=5343.000000
s hg38.chr5_KI270793v1_alt     63219 24 +    126136 GCCTGTGTCGGCGCCGTCCCCTGA
s gorGor5.CYUI01015805v1      137053 24 +    698298 GCCTGTGTTGGTGCCGTCCCGTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566251 24 - 121039945 GCCTGTGTTGGCGCCGTCCTGTCA
i nomLeu3.chr6             T 567 C 0
e panTro5.chr5             181328351 149 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=10907.000000
s hg38.chr5_KI270793v1_alt     63243 20 +    126136 GCTGAGCCCCTCTGCGGGGG
s panTro5.chr5             181328202 20 - 181907262 GCTGTGCCCCTCTGCGGGGG
i panTro5.chr5             T 149 C 0
s gorGor5.CYUI01015805v1      137077 20 +    698298 GCTGCGCCCCTCTGCGGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566275 20 - 121039945 GCTGTGCCCCTCTGCGGGGG
i nomLeu3.chr6             C 0 T 21
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=4155.000000
s hg38.chr5_KI270793v1_alt     63263 22 +    126136 -CCTGTGTCGGCGCCGTCCCCTG
s panTro5.chr5             181328222 23 - 181907262 GCCTGTGTCGGCGCCCTCCCGTC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137097 22 +    698298 -CCTGTGTCGGCGCCGTCGGGTC
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566295 21 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=42651.000000
s hg38.chr5_KI270793v1_alt     63285 93 +    126136 AGCTGAACCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCG
s panTro5.chr5             181328245 93 - 181907262 AGCTGTGCATCTCTGC-GGGGGCCTATGTTGGCGCCGTCCCCTCAGCTGTGCACCTCTGC-GGGGGCCTGTGTCGGCGCCCTCCCGTCAGCCGCA
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137119 93 +    698298 AGCTGCGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTTGGCGCCGTCCCGTCAGCTGCG
i gorGor5.CYUI01015805v1   C 0 T 335
s nomLeu3.chr6             120566274 95 - 121039945 AGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTG
i nomLeu3.chr6             T 21 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=2518.000000
s hg38.chr5_KI270793v1_alt     63378 10 +    126136 CCCCTCTGCG
s panTro5.chr5             181328338 10 - 181907262 CACCTCTGCG
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120566369 10 - 121039945 CCCCTCTGCG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e gorGor5.CYUI01015805v1      137212 335 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=1800.000000
s hg38.chr5_KI270793v1_alt     63388 3 +    126136 GGG
s panTro5.chr5             181328348 3 - 181907262 GGG
i panTro5.chr5             C 0 T 43
s gorGor5.CYUI01015805v1      136877 3 +    698298 GGG
i gorGor5.CYUI01015805v1   T 335 I 1
s nomLeu3.chr6             120566379 3 - 121039945 GGG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=600.000000
s hg38.chr5_KI270793v1_alt     63391 1 +    126136 G
s panTro5.chr5             181328308 1 - 181907262 G
i panTro5.chr5             T 43 C 0
s gorGor5.CYUI01015805v1      136881 1 +    698298 G
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6             120566382 1 - 121039945 G
i nomLeu3.chr6             C 0 I 441
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=14578.000000
s hg38.chr5_KI270793v1_alt     63392 38 +    126136 CCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328309 38 - 181907262 CCTGTGTCGGCGCCCTCCCGTCAGCCGCACACCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136882 38 +    698298 CCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566824 38 - 121039945 CCTGTGTTGGCGCCGTCCTGTCAGCTGTTCACCTCTGC
i nomLeu3.chr6             I 441 T 478
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=5983.000000
s hg38.chr5_KI270793v1_alt     63430 34 +    126136 GGGG-GCCTGTGTTGTCGCCGTTCCCTGAGCTGAA
s panTro5.chr5             181328347 35 - 181907262 GGGGAGCCTGTGTTGTCGCCCTCTCGTCAGCTGTG
i panTro5.chr5             C 0 I 43
s gorGor5.CYUI01015805v1      136920 34 +    698298 GGGG-GCCTGTGTTGGCGCCGTCCCGTCAGCTGCG
i gorGor5.CYUI01015805v1   C 0 I 258
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566862 478 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=3286.000000
s hg38.chr5_KI270793v1_alt     63464 14 +    126136 CCCCTCTGC-GGGGG
s panTro5.chr5             181328425 14 - 181907262 CCCCTCTGC-GGGGG
i panTro5.chr5             I 43 C 0
s gorGor5.CYUI01015805v1      137212 15 +    698298 CCCCTCTGCGGGGGG
i gorGor5.CYUI01015805v1   I 258 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566862 478 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=36971.000000
s hg38.chr5_KI270793v1_alt     63478 81 +    126136 CCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC
s panTro5.chr5             181328439 81 - 181907262 GCTGTGTCTGCGCCCTCCTGTCAGCTGCGCCCCTCTGC-GGGGGGCTGTGTCTGTGCCCTCCTGTCAGCTGCGCCCCTATGC
i panTro5.chr5             C 0 T 259
s gorGor5.CYUI01015805v1      137227 81 +    698298 CCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566384 82 - 121039945 CCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCTATCCTGTCAGCTGTGCCCCTCTGC
i nomLeu3.chr6             T 478 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=600.000000
s hg38.chr5_KI270793v1_alt     63559 1 +    126136 G
s panTro5.chr5             181328261 1 - 181907262 G
i panTro5.chr5             T 259 C 0
s gorGor5.CYUI01015805v1      137308 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566466 1 - 121039945 G
i nomLeu3.chr6             C 0 I 179
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=900.000000
s hg38.chr5_KI270793v1_alt     63560 3 +    126136 GGG
s panTro5.chr5             181328262 3 - 181907262 GGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137309 3 +    698298 GGG
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566467 179 - 121039945 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=16272.000000
s hg38.chr5_KI270793v1_alt     63563 39 +    126136 -GCCTGTGTTGTCGCCGTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328265 39 - 181907262 -GCCTATGTTGGCGCCGTCCCCTCAGCTGTGCACCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137312 39 +    698298 -GCCTGTGTTGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 I 400
s nomLeu3.chr6             120566646 40 - 121039945 GGCCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGT
i nomLeu3.chr6             I 179 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=1500.000000
s hg38.chr5_KI270793v1_alt     63602 5 +    126136 GGGGG
s panTro5.chr5             181328304 5 - 181907262 GGGGG
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120566686 5 - 121039945 GGGGG
i nomLeu3.chr6             C 0 I 1
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e gorGor5.CYUI01015805v1      137351 400 +    698298 I
e panPan2.chr5             183049092 75 - 183735486 T

a score=16913.000000
s hg38.chr5_KI270793v1_alt     63607 42 +    126136 CCTGTGTCGGCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGG
s panTro5.chr5             181328309 42 - 181907262 CCTGTGTCGGCGCCCTCCCGTCAGCCGCACACCTCTGCGGGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137751 42 +    698298 CCTGTCTTGGCGCCCTCCCGTCAGCTGTACATCTCTGCGGGG
i gorGor5.CYUI01015805v1   I 400 T 787
s nomLeu3.chr6             120566692 42 - 121039945 CCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGCAGGA
i nomLeu3.chr6             I 1 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=2865.000000
s hg38.chr5_KI270793v1_alt     63649 10 +    126136 AGCCTGTGTT
s panTro5.chr5             181328351 10 - 181907262 AGCCTGTGTT
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120566734 10 - 121039945 AGCCTGTGTT
i nomLeu3.chr6             C 0 I 166
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e gorGor5.CYUI01015805v1      137793 787 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=882.000000
s hg38.chr5_KI270793v1_alt     63659 9 +    126136 GTCGCCCTC
s panTro5.chr5             181328361 9 - 181907262 GTCGCCCTC
i panTro5.chr5             C 0 T 18
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566744 166 - 121039945 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e gorGor5.CYUI01015805v1      137793 787 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     63668 21 +    126136 CCCTGAGCTGAACCCCTCTGC
e panTro5.chr5             181328370 18 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566744 166 - 121039945 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e gorGor5.CYUI01015805v1      137793 787 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=300.000000
s hg38.chr5_KI270793v1_alt     63689 3 +    126136 GGG
s gorGor5.CYUI01015805v1      137006 3 +    698298 GGG
i gorGor5.CYUI01015805v1   T 787 C 0
e panTro5.chr5             181328370 18 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566744 166 - 121039945 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=8221.000000
s hg38.chr5_KI270793v1_alt     63692 43 +    126136 GGCCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGCGGG
s gorGor5.CYUI01015805v1      137009 43 +    698298 GGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566910 43 - 121039945 GGCCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGCGGG
i nomLeu3.chr6             I 166 T 745
e panTro5.chr5             181328370 18 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=100.000000
s hg38.chr5_KI270793v1_alt     63735 1 +    126136 G
s gorGor5.CYUI01015805v1      137052 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
e panTro5.chr5             181328370 18 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566953 745 - 121039945 T
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=7355.000000
s hg38.chr5_KI270793v1_alt     63736 39 +    126136 GCCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328352 39 - 181907262 GCCTGTGTTGTCGCCCTCTCGTCAGCTGTGCATCTCTGC
i panTro5.chr5             T 18 C 0
s gorGor5.CYUI01015805v1      137053 39 +    698298 GCCTGTGTTGGTGCCGTCCCGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 T 215
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566953 745 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=500.000000
s hg38.chr5_KI270793v1_alt     63775 5 +    126136 GGGGG
s panTro5.chr5             181328391 5 - 181907262 GGGGG
i panTro5.chr5             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566953 745 - 121039945 T
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e gorGor5.CYUI01015805v1      137092 215 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=3563.000000
s hg38.chr5_KI270793v1_alt     63780 17 +    126136 CCTGTGTTGTCGCCGTT
s panTro5.chr5             181328396 17 - 181907262 CCTATGTTGGCGCCCTC
i panTro5.chr5             C 0 T 43
s nomLeu3.chr6             120566208 17 - 121039945 CCTGTGTTGGCGCCGTC
i nomLeu3.chr6             T 745 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e gorGor5.CYUI01015805v1      137092 215 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=3334.000000
s hg38.chr5_KI270793v1_alt     63797 21 +    126136 CCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328370 21 - 181907262 TCGTCAGCTGTGCATCTCTGC
i panTro5.chr5             T 43 C 0
s nomLeu3.chr6             120566225 21 - 121039945 CTGTCAGCTGTGCCCCTCTGC
i nomLeu3.chr6             C 0 I 221
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e gorGor5.CYUI01015805v1      137092 215 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=21579.000000
s hg38.chr5_KI270793v1_alt     63818 43 +    126136 GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC
s panTro5.chr5             181328391 43 - 181907262 GGGGGCCTATGTTGGCGCCCTCCCGTCAGCTGTGCCCCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      136877 43 +    698298 GGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   T 215 I 432
s nomLeu3.chr6             120566467 43 - 121039945 GGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGC
i nomLeu3.chr6             I 221 I 1
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=21217.000000
s hg38.chr5_KI270793v1_alt     63861 43 +    126136 GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC
s panTro5.chr5             181328434 43 - 181907262 GGGGGGCTGTGTCTGCGCCCTCCTGTCAGCTGCGCCCCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137352 43 +    698298 GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCTCCTCTGC
i gorGor5.CYUI01015805v1   I 432 T 216
s nomLeu3.chr6             120566511 43 - 121039945 GGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGT
i nomLeu3.chr6             I 1 I 396
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=300.000000
s hg38.chr5_KI270793v1_alt     63904 1 +    126136 G
s panTro5.chr5             181328477 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120566950 1 - 121039945 G
i nomLeu3.chr6             I 396 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e gorGor5.CYUI01015805v1      137395 216 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=18088.000000
s hg38.chr5_KI270793v1_alt     63905 48 +    126136 -GGGGCCTGTGTTGTCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGGAG
s panTro5.chr5             181328478 48 - 181907262 -GGGGGCTGTGTCTGTGCCCTCCTGTCAGCTGCGCCCCTATGCGGGGGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137179 48 +    698298 -GGGGCCTGTGTTGGCGCCGTCCCGTCAGCTGCGCCCCTCTGCGGGGGG
i gorGor5.CYUI01015805v1   T 216 I 182
s nomLeu3.chr6             120566951 49 - 121039945 GGAAGCCTGTGTTGGCGCCATCCTGTCAGTTGTGCACCTCTGTGGGGGG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=2292.000000
s hg38.chr5_KI270793v1_alt     63953 8 +    126136 CCTGTGTT
s panTro5.chr5             181328526 8 - 181907262 CCTGTGTT
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120567000 8 - 121039945 CCTGTGTT
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e gorGor5.CYUI01015805v1      137227 182 +    698298 I
e panPan2.chr5             183049092 75 - 183735486 T

a score=600.000000
s hg38.chr5_KI270793v1_alt     63961 1 +    126136 G
s panTro5.chr5             181328534 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137409 1 +    698298 G
i gorGor5.CYUI01015805v1   I 182 C 0
s nomLeu3.chr6             120567008 1 - 121039945 G
i nomLeu3.chr6             C 0 T 542
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=3753.000000
s hg38.chr5_KI270793v1_alt     63962 29 +    126136 TCGCCCTCCCCTGAGCTGAACCCCTCTGC-
s panTro5.chr5             181328535 30 - 181907262 TCGCCCTCCTGTCAGCTGCGCCCCTATGCG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137410 29 +    698298 GCGCCGTCGGGTCAGCTGCGCCCCTCTGC-
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 542 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=19224.000000
s hg38.chr5_KI270793v1_alt     63991 43 +    126136 GGGGGCCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328565 43 - 181907262 GGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCATCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137439 43 +    698298 GGGGGCCTGTGTTGGTGCCGTCTCGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 T 420
s nomLeu3.chr6             120566467 43 - 121039945 GGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGC
i nomLeu3.chr6             T 542 I 177
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=3098.000000
s hg38.chr5_KI270793v1_alt     64034 13 +    126136 GGGGGCCTGTGTC
s panTro5.chr5             181328608 13 - 181907262 GGGGGGCTGTGTT
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120566687 13 - 121039945 GGGGGCCTGTGTT
i nomLeu3.chr6             I 177 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e gorGor5.CYUI01015805v1      137482 420 +    698298 T
e panPan2.chr5             183049092 75 - 183735486 T

a score=11571.000000
s hg38.chr5_KI270793v1_alt     64047 35 +    126136 GTCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGGG-
s panTro5.chr5             181328621 35 - 181907262 GTCGCCCTCCCGTCAGCTGTGCACCTCTGCGGGGG-
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137062 35 +    698298 GGTGCCGTCCCGTCAGCTGCGCCCCTCTGCGGGGG-
i gorGor5.CYUI01015805v1   T 420 C 0
s nomLeu3.chr6             120566700 36 - 121039945 GGCGCCATCCTGTCAGCTGTTCACCTCTGCAGGAAG
i nomLeu3.chr6             C 0 T 528
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=4818.000000
s hg38.chr5_KI270793v1_alt     64082 9 +    126136 CCTGTGTTG
s panTro5.chr5             181328656 9 - 181907262 CCTGTGTTG
i panTro5.chr5             C 0 T 295
s gorGor5.CYUI01015805v1      137097 9 +    698298 CCTGTGTCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566208 9 - 121039945 CCTGTGTTG
i nomLeu3.chr6             T 528 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=1683.000000
s hg38.chr5_KI270793v1_alt     64091 8 +    126136 TCGCCGTT
s gorGor5.CYUI01015805v1      137106 8 +    698298 GCGCCGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566217 8 - 121039945 GCGCCGTC
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181328665 295 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=2512.000000
s hg38.chr5_KI270793v1_alt     64099 12 +    126136 CCCTGAGCTGAA
s panTro5.chr5             181328370 12 - 181907262 TCGTCAGCTGTG
i panTro5.chr5             T 295 C 0
s gorGor5.CYUI01015805v1      137114 12 +    698298 GGGTCAGCTGCG
i gorGor5.CYUI01015805v1   C 0 I 270
s nomLeu3.chr6             120566225 12 - 121039945 CTGTCAGCTGTG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=1956.000000
s hg38.chr5_KI270793v1_alt     64111 9 +    126136 CCCCTCTGC
s panTro5.chr5             181328382 9 - 181907262 CATCTCTGC
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120566237 9 - 121039945 CCCCTCTGC
i nomLeu3.chr6             C 0 I 309
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e gorGor5.CYUI01015805v1      137126 270 +    698298 I
e panPan2.chr5             183049092 75 - 183735486 T

a score=38798.000000
s hg38.chr5_KI270793v1_alt     64120 86 +    126136 GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC
s panTro5.chr5             181328391 86 - 181907262 GGGGGCCTATGTTGGCGCCCTCCCGTCAGCTGTGCCCCTCTGC-GGGGGGCTGTGTCTGCGCCCTCCTGTCAGCTGCGCCCCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137396 86 +    698298 GGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTTGGTGCCGTCTCGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   I 270 T 433
s nomLeu3.chr6             120566555 87 - 121039945 GGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTTCACCTCTGCGGGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTTCACCTCTGC
i nomLeu3.chr6             I 309 I 323
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=2970.000000
s hg38.chr5_KI270793v1_alt     64206 14 +    126136 GGGGGCCTGTGTTG
s panTro5.chr5             181328477 14 - 181907262 GGGGGGCTGTGTCT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137049 14 +    698298 GGGGGCCTGTGTTG
i gorGor5.CYUI01015805v1   T 433 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566642 323 - 121039945 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=12116.000000
s hg38.chr5_KI270793v1_alt     64220 33 +    126136 TCGCCGTCCCCTGAGCTGAACCCCTCTGCGGGG
s panTro5.chr5             181328491 33 - 181907262 GTGCCCTCCTGTCAGCTGCGCCCCTATGCGGGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137063 33 +    698298 GTGCCGTCCCGTCAGCTGCGCCCCTCTGCGGGG
i gorGor5.CYUI01015805v1   C 0 I 259
s nomLeu3.chr6             120566965 33 - 121039945 GCGCCATCCTGTCAGTTGTGCACCTCTGTGGGG
i nomLeu3.chr6             I 323 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=5625.000000
s hg38.chr5_KI270793v1_alt     64253 11 +    126136 AGCCTGTGTTG
s panTro5.chr5             181328524 11 - 181907262 GGCCTGTGTTG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137355 11 +    698298 GGCCTGTGTCG
i gorGor5.CYUI01015805v1   I 259 C 0
s nomLeu3.chr6             120566998 11 - 121039945 GGCCTGTGTTG
i nomLeu3.chr6             C 0 T 102
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=5109.000000
s hg38.chr5_KI270793v1_alt     64264 29 +    126136 TCGCCCTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328535 29 - 181907262 TCGCCCTCCTGTCAGCTGCGCCCCTATGC
i panTro5.chr5             C 0 I 1
s gorGor5.CYUI01015805v1      137366 29 +    698298 GCGCCGTCCCGTCAGCTGCGCTCCTCTGC
i gorGor5.CYUI01015805v1   C 0 T 389
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 102 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=19495.000000
s hg38.chr5_KI270793v1_alt     64293 46 +    126136 GGGGGCCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGCGGG
s panTro5.chr5             181328565 46 - 181907262 GGGGGCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCATCTCTGCGGG
i panTro5.chr5             I 1 C 0
s gorGor5.CYUI01015805v1      137006 46 +    698298 GGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGG
i gorGor5.CYUI01015805v1   T 389 C 0
s nomLeu3.chr6             120566907 46 - 121039945 GGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGCGGG
i nomLeu3.chr6             T 102 T 131
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=16034.000000
s hg38.chr5_KI270793v1_alt     64339 40 +    126136 GGCCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328611 40 - 181907262 GGGCTGTGTTGTCGCCCTCCCGTCAGCTGTGCACCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137052 40 +    698298 GGCCTGTGTTGGTGCCGTCCCGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 I 130
s nomLeu3.chr6             120566822 40 - 121039945 GGCCTGTGTTGGCGCCGTCCTGTCAGCTGTTCACCTCTGC
i nomLeu3.chr6             T 131 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=1800.000000
s hg38.chr5_KI270793v1_alt     64379 3 +    126136 GGG
s panTro5.chr5             181328651 3 - 181907262 GGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137222 3 +    698298 GGG
i gorGor5.CYUI01015805v1   I 130 C 0
s nomLeu3.chr6             120566862 3 - 121039945 GGG
i nomLeu3.chr6             C 0 T 222
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=2948.000000
s hg38.chr5_KI270793v1_alt     64382 11 +    126136 GGCCTGTGTTG
s panTro5.chr5             181328654 11 - 181907262 GGCCTGTGTTG
i panTro5.chr5             C 0 T 442
s gorGor5.CYUI01015805v1      137225 11 +    698298 GGCCTGTGTCG
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566865 222 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=1706.000000
s hg38.chr5_KI270793v1_alt     64393 29 +    126136 TCGCCGTTCCCTGAGCTGAACCCCTCTGC
s gorGor5.CYUI01015805v1      137236 29 +    698298 GCGCCGTCCCGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 I 218
e panTro5.chr5             181328665 442 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566865 222 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=1500.000000
s hg38.chr5_KI270793v1_alt     64422 5 +    126136 GGGGG
s gorGor5.CYUI01015805v1      137483 5 +    698298 GGGGG
i gorGor5.CYUI01015805v1   I 218 C 0
s nomLeu3.chr6             120566643 5 - 121039945 GGGGG
i nomLeu3.chr6             T 222 C 0
e panTro5.chr5             181328665 442 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=34591.000000
s hg38.chr5_KI270793v1_alt     64427 81 +    126136 CCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC
s panTro5.chr5             181328223 81 - 181907262 CCTGTGTCGGCGCCCTCCCGTCAGCTGTGCATCTCTGC-GGGGGCCTATGTTGGCGCCGTCCCCTCAGCTGTGCACCTCTGC
i panTro5.chr5             T 442 C 0
s gorGor5.CYUI01015805v1      137488 82 +    698298 CCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCGTCGGGTCAGCTGCGCTCCTCTGC
i gorGor5.CYUI01015805v1   C 0 T 564
s nomLeu3.chr6             120566648 82 - 121039945 CCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGTGGGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGC
i nomLeu3.chr6             C 0 I 45
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=17948.000000
s hg38.chr5_KI270793v1_alt     64508 43 +    126136 GGGGGCCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328304 43 - 181907262 GGGGGCCTGTGTCGGCGCCCTCCCGTCAGCCGCACACCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137006 43 +    698298 GGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   T 564 I 5
s nomLeu3.chr6             120566775 43 - 121039945 GGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTGCCCCTCTGC
i nomLeu3.chr6             I 45 I 1
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=-80.000000
s hg38.chr5_KI270793v1_alt     64551 5 +    126136 -GGGG-G
s panTro5.chr5             181328347 6 - 181907262 -GGGGAG
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120566819 5 - 121039945 GGGGG--
i nomLeu3.chr6             I 1 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e gorGor5.CYUI01015805v1      137049 5 +    698298 I
e panPan2.chr5             183049092 75 - 183735486 T

a score=14696.000000
s hg38.chr5_KI270793v1_alt     64556 38 +    126136 CCTGTGTTGTCGCCGTTCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328353 38 - 181907262 CCTGTGTTGTCGCCCTCTCGTCAGCTGTGCATCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137054 38 +    698298 CCTGTGTTGGTGCCGTCCCGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   I 5 I 479
s nomLeu3.chr6             120566824 38 - 121039945 CCTGTGTTGGCGCCGTCCTGTCAGCTGTTCACCTCTGC
i nomLeu3.chr6             C 0 T 131
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=35102.000000
s hg38.chr5_KI270793v1_alt     64594 77 +    126136 GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCG
s panTro5.chr5             181328391 77 - 181907262 GGGGGCCTATGTTGGCGCCCTCCCGTCAGCTGTGCCCCTCTGC-GGGGGGCTGTGTCTGCGCCCTCCTGTCAGCTGCG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137571 78 +    698298 GGGGGCCTGTGTTGGCGCCGTCGGGTCAGCTGCGCCCCTCTGCGGGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCG
i gorGor5.CYUI01015805v1   I 479 T 350
s nomLeu3.chr6             120566731 78 - 121039945 GGAAGCCTGTGTTGGCGCCATCCTGTCAGCTGTGCCCCTCTGTGGGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTG
i nomLeu3.chr6             T 131 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=5292.000000
s hg38.chr5_KI270793v1_alt     64671 9 +    126136 CCCCTCTGC
s panTro5.chr5             181328468 9 - 181907262 CCCCTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137299 9 +    698298 CCCCTCTGC
i gorGor5.CYUI01015805v1   T 350 C 0
s nomLeu3.chr6             120566809 9 - 121039945 CCCCTCTGC
i nomLeu3.chr6             C 0 I 89
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=16781.000000
s hg38.chr5_KI270793v1_alt     64680 43 +    126136 GGGGGCCTGTGTCGTCGCCGTCCCCTGAGCTGAGCCCCTCTGC
s panTro5.chr5             181328477 43 - 181907262 GGGGGGCTGTGTCTGTGCCCTCCTGTCAGCTGCGCCCCTATGC
i panTro5.chr5             C 0 I 1
s gorGor5.CYUI01015805v1      137308 43 +    698298 GGGGGCCTGTGTTGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 I 1
s nomLeu3.chr6             120566907 43 - 121039945 GGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGC
i nomLeu3.chr6             I 89 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=25592.000000
s hg38.chr5_KI270793v1_alt     64723 57 +    126136 -GGGGGCCTGTGTTGTCGCCCTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTCG
s panTro5.chr5             181328521 58 - 181907262 -GGGGGCCTGTGTTGTCGCCCTCCTGTCAGCTGCGCCCCTATGCGGGGGGCCTGTGTTG
i panTro5.chr5             I 1 C 0
s gorGor5.CYUI01015805v1      137352 58 +    698298 -GGGGGCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCTCCTCTGCGGGGGGCCTGTGTCG
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6             120566950 59 - 121039945 GGGAAGCCTGTGTTGGCGCCATCCTGTCAGTTGTGCACCTCTGTGGGGGGCCTGTGTTG
i nomLeu3.chr6             C 0 T 132
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=3600.000000
s hg38.chr5_KI270793v1_alt     64780 6 +    126136 GCGCCG
s panTro5.chr5             181328579 6 - 181907262 GCGCCG
i panTro5.chr5             C 0 T 217
s gorGor5.CYUI01015805v1      137410 6 +    698298 GCGCCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566877 6 - 121039945 GCGCCG
i nomLeu3.chr6             T 132 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=39525.000000
s hg38.chr5_KI270793v1_alt     64786 109 +    126136 TCCCCTGAGCTGAGCCCCTCTGC-GGGGGCCTGTGTCGGCGCCGTCCCCTGAGCTGAACCCCTCTGC-GGGGGCCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328368 109 - 181907262 TCTCGTCAGCTGTGCATCTCTGC-GGGGGCCTATGTTGGCGCCCTCCCGTCAGCTGTGCCCCTCTGC-GGGGGGCTGTGTCTGCGCCCTCCTGTCAGCTGCGCCCCTCTGC
i panTro5.chr5             T 217 C 0
s gorGor5.CYUI01015805v1      137416 110 +    698298 TCGGGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTTGGTGCCGTCTCGTCAGCTGCGCCCCTCTGCGGGGGGCCTGTGTCGGCGCCGTCGGGTCAGCTGCGCCCCTCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566883 111 - 121039945 TCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCATCCTGTCAGCTGTTCACCTCTGCGGGAAGCCTGTGTTGGCGCCATCCTGTCAGTTGTGCACCTCTGT
i nomLeu3.chr6             C 0 T 175
e aotNan1.NW_018503740v1    25424989  49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354  41 +    298490 I
e saiBol1.JH378155          16010064   0 +  16417988 C
e calJac3.chr2             203849781  18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471   0 -    438239 C
e chlSab2.chr4              90570598   0 -  91010382 C
e cerAty1.NW_012009470v1      267416   0 -  16742782 C
e colAng1.NW_012118799v1      194268   0 -    514179 C
e macNem1.NW_012012389v1      256770   0 -   1764207 C
e macFas5.chr6             181255582   0 - 181584905 C
e rheMac8.chr6             179521862   0 - 180051392 C
e panPan2.chr5             183049092  75 - 183735486 T

a score=-1050.000000
s hg38.chr5_KI270793v1_alt     64895 43 +    126136 GGGGGCCTGTGTCGTCGCCGTCCCCTGAGCTGAACCCCTCTGC
s panTro5.chr5             181328477 43 - 181907262 GGGGGGCTGTGTCTGTGCCCTCCTGTCAGCTGCGCCCCTATGC
i panTro5.chr5             C 0 T 297
s gorGor5.CYUI01015805v1      137526  1 +    698298 G------------------------------------------
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120566994 175 - 121039945 T
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=1500.000000
s hg38.chr5_KI270793v1_alt     64938 5 +    126136 GGGGG
s gorGor5.CYUI01015805v1      137527 5 +    698298 GGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566819 5 - 121039945 GGGGG
i nomLeu3.chr6             T 175 C 0
e panTro5.chr5             181328520 297 - 181907262 T
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=15175.000000
s hg38.chr5_KI270793v1_alt     64943 38 +    126136 CCTGTGTCGGCGCCGTCCCCTGAGCTGAGCCCCTCTGC
s panTro5.chr5             181328223 38 - 181907262 CCTGTGTCGGCGCCCTCCCGTCAGCTGTGCATCTCTGC
i panTro5.chr5             T 297 C 0
s gorGor5.CYUI01015805v1      137532 38 +    698298 CCTGTGTTGGCGCCGTCGGGTCAGCTGCGCTCCTCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566824 38 - 121039945 CCTGTGTTGGCGCCGTCCTGTCAGCTGTTCACCTCTGC
i nomLeu3.chr6             C 0 T 43
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=3000.000000
s hg38.chr5_KI270793v1_alt     64981 5 +    126136 GGGGG
s panTro5.chr5             181328261 5 - 181907262 GGGGG
i panTro5.chr5             C 0 I 86
s gorGor5.CYUI01015805v1      137570 5 +    698298 GGGGG
i gorGor5.CYUI01015805v1   C 0 I 1
s nomLeu3.chr6             120566819 5 - 121039945 GGGGG
i nomLeu3.chr6             T 43 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=5184.000000
s hg38.chr5_KI270793v1_alt     64986 29 +    126136 CCTGTGTCGGCGCCGTCCCCTGAGCTGAA
s gorGor5.CYUI01015805v1      137576 29 +    698298 CCTGTGTTGGCGCCGTCGGGTCAGCTGCG
i gorGor5.CYUI01015805v1   I 1 I 44
s nomLeu3.chr6             120566824 29 - 121039945 CCTGTGTTGGCGCCGTCCTGTCAGCTGTT
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181328266 86 - 181907262 I
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=2296.000000
s hg38.chr5_KI270793v1_alt     65015 13 +    126136 CCCCTCTGCGGGG-
s gorGor5.CYUI01015805v1      137649 13 +    698298 CCCCTCTGCGGGG-
i gorGor5.CYUI01015805v1   I 44 I 1
s nomLeu3.chr6             120566853 14 - 121039945 CACCTCTGCGGGAA
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181328266 86 - 181907262 I
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=26376.000000
s hg38.chr5_KI270793v1_alt     65028 59 +    126136 GCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCCCTCTGC-GGGGGCCTGTGTTGTCGCCC
s panTro5.chr5             181328352 59 - 181907262 GCCTGTGTTGTCGCCCTCTCGTCAGCTGTGCATCTCTGC-GGGGGCCTATGTTGGCGCCC
i panTro5.chr5             I 86 I 174
s gorGor5.CYUI01015805v1      137663 59 +    698298 GCCTGTGTCGGCGCCGTCCCGTCAGCCGTGCACCTCTGC-GGGGGCCTGTCTTGGCGCCC
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6             120566867 60 - 121039945 GCCTGTGTTGGCGCCGTCCTGTCAGCTGTGCCCCTCTGCGGGGGGCCTGTGTTGGCGCCA
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=1813.000000
s hg38.chr5_KI270793v1_alt     65087 4 +    126136 TCCC
s panTro5.chr5             181328585 4 - 181907262 TCCT
i panTro5.chr5             I 174 C 0
s gorGor5.CYUI01015805v1      137722 4 +    698298 TCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566927 4 - 121039945 TCCT
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471 0 -    438239 C
e chlSab2.chr4              90570598 0 -  91010382 C
e cerAty1.NW_012009470v1      267416 0 -  16742782 C
e colAng1.NW_012118799v1      194268 0 -    514179 C
e macNem1.NW_012012389v1      256770 0 -   1764207 C
e macFas5.chr6             181255582 0 - 181584905 C
e rheMac8.chr6             179521862 0 - 180051392 C
e panPan2.chr5             183049092 75 - 183735486 T

a score=39347.000000
s hg38.chr5_KI270793v1_alt     65091 56 +    126136 GTCAGCTGAGCCCCTCTGCGGGG-GCCTGTGTCGGCGCCGTCCCGTCAGCTGCGCCC
s panTro5.chr5             181328589 56 - 181907262 GTCAGCTGTGCATCTCTGCGGGG-GGCTGTGTTGTCGCCCTCCCGTCAGCTGTGCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049017 57 - 183735486 GTCAGCTGCGCACCTCTGCGGGGAGCCTGTGTTGGCGCCGTCCCGTCAGCTGCGCAC
i panPan2.chr5             T 75 C 0
s gorGor5.CYUI01015805v1      137726 57 +    698298 GTCAGCTGCACACCTCTGCGGGGAGCCTGTCTTGGCGCCCTCCCGTCAGCTGTACAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566931 57 - 121039945 GTCAGCTGTTCACCTCTGCGGGAAGCCTGTGTTGGCGCCATCCTGTCAGTTGTGCAC
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e colAng1.NW_012118799v1      194268  0 -    514179 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C

a score=24262.000000
s hg38.chr5_KI270793v1_alt     65147 20 +    126136 CTCTGC-GGGGGCCTGTGTTG
s panTro5.chr5             181328645 20 - 181907262 CTCTGC-GGGGGCCTGTGTTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049074 20 - 183735486 CTCTGC-GGGGTCCTGTGTTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137783 20 +    698298 CTCTGC-GGGGTCCTGTGTTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120566988 21 - 121039945 CTCTGTGGGGGGCCTGTGTTG
i nomLeu3.chr6             C 0 M 359
s colAng1.NW_012118799v1      194268 20 -    514179 CTCTGT-GGGGGCCTGTGTTG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C

a score=5900.000000
s hg38.chr5_KI270793v1_alt     65167 10 +    126136 GTGCTGTCCG
s panTro5.chr5             181328665 10 - 181907262 GTGCTGTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049094 10 - 183735486 GTGCTGTCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137803 10 +    698298 GTGCTGTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s colAng1.NW_012118799v1      194288 10 -    514179 ACGTCATCCT
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064  0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 359 - 121039945 M
e manLeu1.NW_012110441v1      164471  0 -    438239 C
e chlSab2.chr4              90570598  0 -  91010382 C
e cerAty1.NW_012009470v1      267416  0 -  16742782 C
e macNem1.NW_012012389v1      256770  0 -   1764207 C
e macFas5.chr6             181255582  0 - 181584905 C
e rheMac8.chr6             179521862  0 - 180051392 C

a score=5500.000000
s hg38.chr5_KI270793v1_alt     65177 1 +    126136 G
s panTro5.chr5             181328675 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049104 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137813 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179521862 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255582 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256770 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267416 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570598 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164471 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      194298 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e saiBol1.JH378155          16010064 0 +  16417988 C
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 359 - 121039945 M

a score=134760.000000
s hg38.chr5_KI270793v1_alt     65178 26 +    126136 TCGTCCGTGTTGGGAGGGATCTGGTG
s panTro5.chr5             181328676 26 - 181907262 TCGTCCGTGTGGGGAGGGATCTGGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049105 26 - 183735486 TCATCCGTGTGGGGAGGGATCTGGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137814 26 +    698298 TCGTCCGTGTGGGGAGGAATCTGGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179521863 26 - 180051392 TCATCCGTGTGGGGAGGGACCTGGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255583 26 - 181584905 TCATCCGTGTGGGGAGGGACCTGGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256771 26 -   1764207 TCATCCGTGTGGGGAGGGACCTGGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267417 26 -  16742782 TCATCCGTGTGGGGAGGGACCTGGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570599 26 -  91010382 TCATCCATGTGGGGAGGGACCTGGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164472 26 -    438239 TCATCCGTGTGGGGAGGGACCTGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      194299 26 -    514179 TCATCCATGTGGGGCGGGACCAGGCA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16010064 26 +  16417988 TCATCCGTGTGGGGAAGGACCCAGTG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       93354 41 +    298490 I
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 359 - 121039945 M

a score=112097.000000
s hg38.chr5_KI270793v1_alt     65204 22 +    126136 CCCACCAGCGGTGCATATGCAG
s panTro5.chr5             181328702 22 - 181907262 CCCACCAGCGGTGCATATGCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049131 22 - 183735486 CCCACCAGCGGTGCATATGCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137840 22 +    698298 CCCACCAGCGGTGCATATGCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179521889 22 - 180051392 CCCACCAGCCATGCATGTGCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255609 22 - 181584905 CCCACCAGCCATGCATGTGCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256797 22 -   1764207 CCCACCAGCCATGCATGTGCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267443 22 -  16742782 CCCACCAGCCATGCATGTGCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570625 22 -  91010382 CCCACCAGCCATGCATGTGCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164498 22 -    438239 CCCACCAGCCATGCATGTGCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      194325 22 -    514179 CCCACCAGCCATGCATATGCAG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16010090  3 +  16417988 CCT-------------------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       93395 22 +    298490 CCCACCGGCCGTGCGTGTGCAG
i cebCap1.NW_016108158v1   I 41 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e calJac3.chr2             203849781 18 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 359 - 121039945 M

a score=198373.000000
s hg38.chr5_KI270793v1_alt     65226 32 +    126136 CCTGGCACCAGCGGCCGGGGCATCTCCACCCT
s panTro5.chr5             181328724 32 - 181907262 CCTGGCACCAGCGGCCGGGGCATCTCCACCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049153 32 - 183735486 CCTGGCACCAGCGGCCGGGGCATCTCCACCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137862 32 +    698298 CCTGGCACCAGCGGCCGGGGCATCTCCACCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179521911 32 - 180051392 CCTGGCACCACTGGCTGGGGCATCTCCACCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255631 32 - 181584905 CCTGGCACCAGTGGCTGGGGCATCTCCACCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256819 32 -   1764207 CCTGGCACCAGTGGCTGGGGCATCTCCACCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267465 32 -  16742782 CCTGGCACCAGTGGCTGGGGCATCTCCACCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570647 32 -  91010382 CCTGGCACCAGTGGCTGGGGCATCTCCACCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164520 32 -    438239 CCTGGCACCAGTGGCTGGGGCATCTCCACCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      194347 32 -    514179 CCTGGCACCAGTGGCTGGGGCATCTCCACCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203849799 31 + 204313951 CCCGGCACCTGTGGCTGGGACATGGCTGCCT-
i calJac3.chr2             I 18 C 0
s saiBol1.JH378155          16010093 21 +  16417988 ----------GTGGCCGGGTCATCGCTGCGT-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       93417 31 +    298490 CCTGGCACCTGTGGCCGGGACATCGCTGCCT-
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25424989 49 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 359 - 121039945 M

a score=775113.000000
s hg38.chr5_KI270793v1_alt     65258 102 +    126136 GCCCCGCCTGCCTGGTGTTCTGGCCTCTCAGGATCCCGCACACCC-GGGCTCTCCTCCATCTGGGGGAGGACTCCCTCCTGGGGACTGGTCTACAGGACCTCT
s panTro5.chr5             181328756  99 - 181907262 -CCCCGCCTGCCTGGTGTTCTGGCCTC--AGGATCCCGCACACCC-GGGCTCTCCTCCATCTGGGAGAGGACTCCCTCCCGGGGACTGGTCTACAGGACCTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049185 101 - 183735486 -CCCCGCCTGCCTGGTGTTCTGGCCTCTCAGGATCCCGCACACCT-GGGCTCTCCTCCATCTGGGAGAGGACTCCCTCCCGGGGACTGGTCTACAGGACCTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137894 102 +    698298 GCCCCGCCTGCCTGGTGTTCTGGCCTCTAAGGATCCCGCACACCC-GGGCTCTCCTCCATCTGGGAGAGGACTCCTTCCTGGGGACTGGTCTACAGGACCTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179521943 102 - 180051392 GCCCCGCCTGCCTAGTGTTCTCACCTCTCAGGAGCGGACACACCC-GGGCTCTCTTCCATCTGGGAGAGGACTCCGTCCCGGGGACTGGTCTGCAGGGCCTCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255663 102 - 181584905 GCCCCGCCTGCCTAGTGTTCTCACCTCTCAGGAGCGGACACACCT-GGGCTCTCTTCCATCTGGGAGAGGACTCCGTCCCGGGGACTGGTCTGCAGGGCTTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256851 102 -   1764207 GCCCCGCCTGCCTAGTGTTCTCACCTCTCGGGAGCGGACACACCC-GGGCTCTCTTCCATCTGGGAGAGGACTCCGTCCCGGGGACTGGTCTGCAGGGCCTCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267497 100 -  16742782 GCCCCGCCTGCCTGGTGTTCTCACCTCTCAGGAGCGG--ACACCC-GGGCTCTCTTCCATATGGGAGAGGACTCCGTCCCGGGGACTGGTCTGCAGGGCCTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570679 102 -  91010382 GCCCCGCCTGCCTGGTGTTCTCACCTCTCAGGAGCGGACACACCC-AGGCTCTCTTCCATCTGGGAGAAGACTCTGTCCTGGGCACTGCTCTGCAGGGCCTCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164552 100 -    438239 GCCCCGCCTGCCTGGTGTTCTTACCTCTCAGGAGCGG--ACACCC-GGGCTCTCTTCCATATGGGAGAGGACTCTGTCCCGGGGACTGGTCTGCAGGGCCTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      194379 102 -    514179 GCCCTGCCTGCCTGGTGTTCTCACCTCTCAGGAGCGGACACACCC-GGGCTCTCTTCCATCTGGGAGAGGACTCTGTCCCGGGGACGGGTCTGCAGGGCCTCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203849830 103 + 204313951 GGCCCACCTGCCTGGCGTCCTCGCCTCTCAGGAGCCTGCACGCCCTGGGCTCTCCTCTGTCCGGGAGAGGACTCTGCCCTGGGGACTGGCCTGCAGGGCCTCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16010114 102 +  16417988 GCCCCACCTGCCCGGCGTCCTCACCTCTCAGGAGCCCGCACACCCTGGGCTCTGCTCCATCCGGGAGAGGGCTCTGCCCC-GGGACCGGCCCGCGGGGCCTCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       93448 103 +    298490 GCCCCCCCTGCCTGGCATCCTCGCCTCTCAGGAGCCTGCACGCCCTGGGCTCCCCTCCACCCCGGAGAGGACTCTGCCCCGGGGACTGGCCTGCAGGGCCTCT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25425038 103 -  25620257 GCCCCACCTGCCTGGCGTCCTCGCCTCTCAGGAGGCCGCACGCCCTGGGCTCTCCTCCATCCAGGAGAGGACTCTGCCCCGGGGACTGGCCTGCAGGCCCTCT
i aotNan1.NW_018503740v1   I 49 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120567009 359 - 121039945 M

a score=1991066.000000
s hg38.chr5_KI270793v1_alt     65360 223 +    126136 GGGCAGCTGGTACATTTTCTTCACAGCGCCAGAACACTGAGCGCAAGGGTTTGCTTCCCTCCTGTCTTTCCCTTTCAACCCGCTAAAGGCAAACAGCACAGCCACAGCCGTAATgct-ggaagggactccaaggaccaccatcttgctgatggggaaactga-ggctctgagtctgctcccccagaccacagaggggaagaactggggttcaagaacagggcttc
s panTro5.chr5             181328855 223 - 181907262 GGGCAGCTGGTACATTTTCTTCACAGCGCCAGAACACTGAGCGCAAGGGTTTGCTTCCCTCCTGTCTTTCCCTTTCAACCCGCTAAAGGCAAACAGCACAGCCACAGCCttaatgct-ggaagggactccaaagaccaccatcttgctgatggggaaactga-ggctctgagtctgctcccccagaccacagaggggaagaactggggttcaagaacagggcttc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049286 223 - 183735486 GGGCAGCTGGTACATTTTCTTCACAGCGCCAGAACACTGAGCGCAAGGGTTTGCTTCCCTCCTGTCTTTCCCTTTCAACCCGCTAAAGGCAAACAGCACAGCCACAGCCttaatgct-ggaagggactccaaagaccaccatcttgctgatggggaaactga-ggctctgagtctgctcccccagaccacagaggggaagaactggggttcaagaacagggcttc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      137996 223 +    698298 GGGCAGCTGGTACATTTTCTTCACAGCGCCAGAACACTGAGCGCAAGGGTTTGCTTCCCTCCTGTCTTTCCCTTTCAACCCGCTAAAGGCAAACAGCACAGCCACAGCCGTAATgct-ggaagggactccaaggaccaccatcttgctgatggggaaactga-ggctctgagtctgctcccccagaccccagagggtaagaactggggttcaagaacagggcttc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120567368 222 - 121039945 GAGCAGCTGGTACATTTTCTTCAC-GCGCCAGAACACTGAGCGCGAGTGTTTGCTTCCCTCCTGTCTTTCCCTTTAAACTGGCTAAAGGCAAACGGCACAGCCACAGCCGTAATgct-ggaagggacgccaaggaccaccatcttgctgatggggaaactga-ggccctgagTCCGCTCCCCCAGACCCCGGAGAGGAAGAACTGGGGTTCAAGAACAGGGCTTC
i nomLeu3.chr6             M 359 C 0
s rheMac8.chr6             179522045 224 - 180051392 GGGCAGCTGGTACATTTTCTTCAT-GTACCAAAACACTGAGCACAAGTATTTGCTTCCCTCCTGTCTTTCCCTTTGAACTGGCGAAAGGCCCACGGCACAGCCACAGCCGCGATGCTGGGAAGGGACTCCAAGGACCATTGTCTTGCTGATGGGGAAACTGAGGGCCCTGAGTCTGCTTCCCCAGACCCCAGAGAGGAAGAACTGGGGTTCAAGAACAGGGCTTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255765 224 - 181584905 GGGCAGCTGGTACATTTTCTTCAT-GTACCAAAACACTGAGCACAAGTGTTTGCTTCCCTCCTGTCTTTCCCTTTGAACTGGCGAAAGGCCCACGGCACAGCCACAGCCGCGATGCTGGGAAGGGACTCCAAGGACCATTGTCTTGCTGATGGGGAAACTGAGGGCCCTGAGTCTGCTTCCCCAGACCCCAGAGAGGAAGAACTGGGGTTCAAGAACAGGGCTTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      256953 224 -   1764207 GGGCAGCTGGTACATTTTCTTCAT-GTACCAAAACACTGAGCACAAGTGTTTGCTTCCCTCCTGTCTTTCCCTTTGAACTGGCGAAAGGCCCACGGCACAGCCACAGCCGCGATGCTGGGAAGGGACTCCAAGGACCATTGTCTTGCTGATGGGGAAACTGAGGGCCCTGAGTCTGCTTCCCCAGACCCCAGAGAGGAAGAACTGGGGTTCAAGAACAGGGCTTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267597 224 -  16742782 GGGCAGCTGGTACATTTTCTTCAT-GTACCAAAACACTGAGCACAAGTGTTTGCTTCCCTCCTGTCTTTCCTTTTGAACTGGCGAAAGGCCCACGGCACAGCCACAGCTGCGATGCTGGGAAGGGACTCCAAGGACCATTGTCTTGCTGATGGGGAAACTGAGGGCCCTGAGTCTGCTTCCCCAAACCCCAGAGAGGAAGAACTGGGGTTCAAGAACAGGGCTTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90570781 223 -  91010382 GGGCAGCTGGTACATTTTCTTCAT-GTACCCAAACACTGAGCACAAGTGTTTGCTTCCCTCCTGTCTTTCCCTTTGAACTGGCTAAAGGCCCATGGCACAGCCACAGCCGCGATGCTGGGAAGGGACTCCAAGGAccatcgtcttgctgatggggaaactga-ggccctgagTCTGCTCTCCCAGACCCTAGAGAGGAAGAACTGGGGTTCAAGAACAGGGCTTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      164652 223 -    438239 GGGCAGCTGGTACATTTTCTTCAT-GTACCAAAACACTGAGCACAAGTGTTTGCTTCCCTCCTGTCTTTCCCTTTGAACTGGCAAAAGGCCCACGGCACAGCCACAGCCTCGATGCTGGGAAGGGACTCCAAGGAccattgtcttgctgatggggaaactga-ggccctgagTCTGCTTCCCCAGACCCCAGAGAGGAAGAACTGGGGTTCAAGAACAGGGCTTC
i manLeu1.NW_012110441v1   C 0 M 2680
s colAng1.NW_012118799v1      194481 223 -    514179 GGGCAGCTGCTACATTTTCTTCAT-GTACCAAAACACTGAGCACTAGCGTTTGCTTTCCTCCTGTCTTTCCCTTTGAACTGGCTAAAGGCCAACAGCACAGTCACAGCCGCGATGCTGGGAAGGGACTCCAAGGACCATTGTCTTGCTAATGGGGAAACTGA-GGCCCTGGTTCTGCTCCCCCAGACCCCAGAGAGGAAGAACTGGGGTTCAAGAACAGGGCTTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203849933 220 + 204313951 GGGCAGCTGGCACGTTTTCTTCAG-GCACCAAAACACTGGGCAT-GGTGCCT-GCTCCCTCCTGCCCTTCCCTTTAAACTGGCTGAAGGCACACGGCACAGCCACAGCCATGATGCT-GGGAGGGACTCTGAGGACTCTCCTCTTGCTCATGGGGAAACCGA-GGCCCCATGTCTGCTCCTCCAGACCCCAGAGAGTAAGAACTGGGGTTCAAGAACAGGGCTTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16010216 206 +  16417988 GCACAGCTGCTGCGTCTTCTTCAG-GCACT----------------GTGTCTGGTTCCCTCCTGTCTTTCCCTTTAAACCCGCTGAAGGCAAATGGCACAGCCACAGCCGTGATGCT-GGAAGGGACTCTGAGGACTCTTGTCTTGCTCATGGGGAAACTGA-GGCCCCACGTCTGCTCCCCCAGGCCCCAGAGAGTAAGAATTGGGGTTCAAGGACAGGGCTTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       93551 220 +    298490 GGGCAGCTGGTACGTTTTCTTCAG-GCACCAAAACACTGGGCAC-AGTGTCTGCTTCCCTCCTGCTCTTCCCTTTAAACTGGCTAAAGGCAAACAGCACAGCCACAGCCGTGATGCT-GGAGGGGACTCTGAGGACTCTTGTCTTGCTCATGGGGAAACTGA-GGCCCCACGTCTGCTCCCCCAGGCCCCAGAGAGTAAGAACTGGGGTTCAAGGAC-GGGCTTC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25425141 221 -  25620257 GGGCAGCTGGCACGTTTTCTCCAG-GCACCAAAACCCTGGGCAC-AGCGTCTGCTTCCCTCCTGTCCTTCCCTTTAAACTGGCTAAAGACAAACGGCTCAGTGACAGCCGTGATGCT-GGAAGGGACTCCGAGAACTCTTGTCTTGCTCGTGGGGAAACTGA-GGCCCCACGTCTGCTCCCCCAGACCCCAGAGAGTAAGAACTGGGGTTCAAGGACAGGGCTTC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=2399312.000000
s hg38.chr5_KI270793v1_alt     65583 332 +    126136 cgtcccccggtttgggga-ccccctctgAGGACTTATGCTCATGCTGCCTTTCTTCCGGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTTTCTCCCCTTTCTGGAACCTCACAGTTGAGCAGACAATACA--TTTTTTTCAAAGAATTA-TTGTTGTACCTTTTTAAAAGAGCCTGGTGAAAACAAAAATGAA-TAATATCCCTTAAACAGAGGTTTGGGCAAGAAGGAAACACACCTTCCACACCCAGGGTTTATGGA-----------------------------------AG---ACACGTCGCCATTTGCCCGGG--CCACACGACTCCTCTCCAGGCTGCATGCGCTGCGGGGCCAGCCGGG----------G
s panTro5.chr5             181329078 331 - 181907262 cgtctcccggtttgGGGA-CCCCCGCTGAGGACTTATGCTCATACTGCCTTTCTTCCGGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTTTCTCCCCTTTCTGGAACCTCACAGTTGAGCAGAGAATACA--TTTTTTTCAAAGAATTA-TTGTTGTACCTTTTTAAAAGAGCCTGGTGAAAACAAAAATGAA-TAATATCCCTTAAACAGAGGTTTGGGCAAGAAGGAAACACACCTTCCACACCCAGGGTT-ATGGA-----------------------------------AG---ACACATCGCCATTTGCCCGGG--CCACACGACTCCTCTCCAGGCTGCATGTGCTGCGGGGCCAGCCGGG----------G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049509 331 - 183735486 cgtctcccggtttgggga-ccccctctgAGGACTTATGCTCATGCTGCCTTTCTTCCGGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTTTCTCCCCTTTCTGGAACCTCACAGTTGAGCAGAGAATACA--TTTTTTTCAAAGAATTA-TTGTTGTACCTTTTTAAAAGAGCCTGGTGAAAACAAAAATGAA-TAATATCCCTTAAACAGAGGTTTGGGCAAGAAGGAAACACACCTTCCACACCCAGGGTT-ATGGA-----------------------------------AG---ACACGTCGCCATTTGCCCGGG--CCACACGACTCCTCTCCAGGCTGCATGCGCTGCGGGGCCAGCCGGG----------G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      138219 332 +    698298 cgttccccggtttgggga-ccccctctgAGGACTTATGCTCATGCTGCCTTTCTTCCGGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTTTCTCCCCTTTCTGGAACCTCACAGTTGAGCAGAGAATACA--TTTTTTTCAAAGAATTA-TTGTTGTACCTTTTTAAAAGAGTCTGGTGAAAACAAAAATGAA-TAATATCCCTTAAACAGAGGTTTGGGCAAGAAGGAAACACACCTTCCACACCCAGGGTTTATGGA-----------------------------------AG---ACACGTCGCCATTTGCCCGGG--CCACACGACTCCTCTCCAGGCTGCATGCGCTGCGGGGCCAGCCGGG----------G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120567590 344 - 121039945 CGTCCCCGGGTTTGGGGACCCCCCTCTGGGGACCTATGCTTATGCTGCCTTTCTTCTAGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTTTCTCCCCTTTCCAGAACCTCACAGTTGAGCAGAGAATACA--TTTTTTTCGAAGAATTA-TTGTTGTACCTTTTTAAAAGAGCCTGGTGAAAACAAAAATGAATTAATATCCCTTAAACAGAAGTTTGGGCAAGAAGGAAACACACCTTCCACGTCCAGGTTT-ATGGA-----------------------------------AGACAACACATCGCCGTTTGCCCGGG--CCACACGACTCCTCTTCAGGCTGCATGTGCTGCAGGGCCAGCCGGG--GCAGGCCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179522269 332 - 180051392 CGTCCCTGGGTTTGGGGA-CCCCGTCTGGAGTCTTATGCTCATGCCGCCTTTCTTCTGGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTTTCTCCCCTTTCTGGAACCTCACAGATGAGCAGAGAATACA-TTTTTTTTCAAATAATTA-TCGT----ACCTTGTAAAAGAGCCTGGTGAAAACAAAAATGAA-CAATGTCCCTTAAACAGAGGTTTGGGCAGGAAGGAAACACGCCCTGCACATCCAGGGTTTGTGGA-----------------------------------AGACGACGCATCGCCTTGTGTCCTGG--CCACAAGACTCCTCCCCAGGCTGCGTGCGCTGCGGGGCCAGCCGGG----------G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181255989 332 - 181584905 CGTCCCCGGGTTTGGGGA-CCCCGTCTGGAGTCTTATGCTCATGCCGCCTTTCTTCTGGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTTTCTCCCCTTTCTGGAACCTCACAGATGAGCAGAGAATACA-TTTTTTTTCAAATAATTA-TCGT----ACCTTGTAAAAGAGCCTGGTGAAAACAAAAATGAA-CAATGTCCCTTAAACAGAGGTTTGGGCAGGAAGGAAACACGCCCTGCACATCCAGGGTTTGTGGA-----------------------------------AGACGACACATCGCCTCGTGTCCTGG--CCACAAGACTCCTCCCCAGGCTGCGTGCGCTGCGGGGCCAGCCGGG----------G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      257177 332 -   1764207 CGTCCCCGGGTTTGGGGA-CCCCGTCTGGAGTCTTATGCTCACGCCGCCTTTCTTCTGGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTTTCTCCCCTTTCTGGAACCTCACAGATGAGCAGAGAATACA-TTTTTTTTCAAATAATTA-TCGT----ACCTTGTAAAAGAGCCTGGTGAAAACAAAAATGAA-CAATGTCCCTTAAACAGAGGTTTGGGCAGGAAGGAAACACGCCCTGCACATCCAGGGTTTGTGGA-----------------------------------AGACGACACATCGCCTCGTGTCCTGG--CCACAAGACTCCTCCCCAGGCTGCGTGCGCTGCGGGGCCAGCCGGG----------G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      267821 332 -  16742782 CGTCCCCGGGTTTGGGGA-CCCCGTCTGGAGTCTTATGCTCATGCCGCCTTTCTTCTGGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTCTCTTCCCTTTCTGGAACCTCACAGATGAGCAGAGAATACA-TTTTTTTTCAAAGAATTA-TCGT----ACCTTGTAAAAGAGCCTGGTGAAAACAAAAATGAA-CAATGTCCCTTAAACAGAGGTTTGGGCAGGAAGGAAACACGCCCTGCACGTCCAGGGTTTGTGGA-----------------------------------AGACGACACATCGCCTCGTGTCCTGG--CCACAAGACTCCTCCCCAGGCTGCGTGCGCTGCGGGGCCAGCCGGG----------G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90571004 367 -  91010382 CATCCCCGGGTTTGGGGA-CCCCGTCTGGTGTCTTATGCTCATGCTGCCTTTCTTCTGGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTTTCTCCCCTTTCTGGAACCTCACAGATGAGCAGAGAATACA-AGTTTTTTCAAAGAATTA-TCGT----ACCTTGTAAAAGAGCCTGGTGAAAACAAAAATGAA-CAATGTCCCTTAAACAGAGGTTTGGGCAGGAAGGAAACACGCCCTGCATGTCCAGGGTTTGTGGAAGACAACGCACCTCCTCGTGTCCCGGCCACACGACAGACGACACATCGCCTTGTGTCCGGG--CCACACGACTCCTCCCCAGGCTGCGTGCGCTGCGGGGCCAGCCGGG----------G
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      194704 331 -    514179 TGTCCCCGGGTTTGGGGA-CCCCATCTGGAGTCTTATGCTCATGCCGCCTTTCTTCTGGGGTCACTCAGAGACCCTGGACCTACAGCTGGGATGGCTTTTTCCCCTTTCTGGAACCTCACAGATGAGCAGAGAATACATTTTTTTTTCGAAGAATTA-TCGT----ACCTTGTAAAAGAGCCTGGTGAAAACAAAAATGAA-CAATGTCCCTTAAACAGAGGTTTGGGCAGGAAGGAAACACGCCCTCCACGTCCAGGGTTTATAGA-----------------------------------AGACAACACATCGCCTTGTG-CCGGG--CCACACGACTGCTCTCCAGGCTGCGTGTGCCGCGGGGCCAGCT-GG----------G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203850153 318 + 204313951 -AGGGCCAGGTTTGGGGA-CCCCTTCTGGGGGCTCATGCTCATGCCGCCTTTCTTC-GGGGTCACTCAGAGACCCCAGACCCGCTGCT------------TCCACTTTCTGGAACCTCATGGTTGAGCAGAGGATACA---TTTTTTCAAAGAATTA-TTGTTGTGCCCTTTCAAAAGAGCCTGGTGGAAACAAAAATGAA-T-GTATCCCTTAAACAGAGGTTTGGGCAAGAAGGAAACACGCCTTCCACATCCGGGGTTTATGGA-----------------------------------AG--ACCCCATCGCTGTCTGCCCCTGACCCACAGGACTCCCCCTTAGGCTGCGTGTGGCATGGGGCCGGTGGGG-----------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16010422 330 +  16417988 -GGGCCCGGGTTTGGGGA-CCCCTTCTGGGGGCTCATGCTCATGCCACCTTTCCTC-GGGGTCACTCAGAGACCCTGGACCCACCGCTGGG-CGGCTTCCTCCACTTTCCAGAACCTCATGGTTGAGCAGAGAATACG---TATTTTCAAAGAATTA-TTGTTGTGCCCTTTCAAAAGAGCCTGGTGAAAACAAAAATGAA-T-ATATCCCTTAAACAGCGGTTTGGGCAAGAAGGAAACACGCCTTCCACGTCCGGGGTTTGTGAA-----------------------------------AA-CGCCTCATCGCTGTCTGTCCCCGACCCACAGGACTCCTCCTCAGGCTGCGTGTGGCGCGGGGCCGGCCGGG-----------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       93771 328 +    298490 -GGGCCCGGGTTTGGG----CCCTTCT-GGGGCTCATGCTCATGCTGCCTCTCCTC-GGGGTCACTCAGAGACCCTGGACCCACCACTGGG-CGGCTTCCTCCACTTTCCGAAACCTCATGGTTGAGCAGAGAATACA---TTTTTTCGAAGAATTA-TTGTTGCGCCCTTTCAAAAGATCCTGGTGAAAACAAAAATGAA-T-ATATCCCTTAAACAGCGGTTCAGGCAAGAAGGAAACACGCCTTCCACGTCCAGGGTTTGTGGA-----------------------------------AGACGCCTCATTGCTGTCTGCCCCCGACCCACAGGACTCCTCCTCAGGCTGCGTGTGGTGCAGGGCCAGCTGGGG----------
i cebCap1.NW_016108158v1   C 0 I 75
s aotNan1.NW_018503740v1    25425362 330 -  25620257 -GGGCCCAGGTTTGGGGA-CCCCTTCTGGAGGCTCATGCTCACGTCGCCTTTCCTC-GGGGTCACTCAGAGACCCTGGACCCACCGCTGGG-CGGCTTCCTCCACTTTCTGGAACCTCGTGGTTGAGCAGAGGATACA---TTTTTTCAAAGAATTATTTGTTGTGCGCTTTCAAAAGAGCCTGGTGAAAACAAAAATGAA-T-ATATCCCTTAAACAGTGGTTTGGGCAAGAAGGAAACACGCCTTCCACGTCCGGGGTTTATGAC-----------------------------------AGACGCCTCATCGCCCTGTGCCCCCGACCCACGGGACTCCTC---AGGCTGCGTGCGGCGCGGGGCCAGCCGGG-A---------
i aotNan1.NW_018503740v1   C 0 I 18
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=63891.000000
s hg38.chr5_KI270793v1_alt     65915 15 +    126136 GCCGCTCCACACAGA
s panTro5.chr5             181329409 15 - 181907262 GCCGCTCCACACAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049840 15 - 183735486 GCCGCTCCACACAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      138551 15 +    698298 GCCGCTCCACGCAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120567934 15 - 121039945 GGTGGTGAGGACAGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179522601 15 - 180051392 GCCGCTCCACCCAGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181256321 15 - 181584905 GCCGCTCCACCCAGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      257509 15 -   1764207 GCCGCTCCACCCAGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      268153 15 -  16742782 GCCACTCCACCCAGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90571371 15 -  91010382 GCCGCTCCACCCAGA
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      195035 15 -    514179 GCCGTTCCACCCAGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203850471 15 + 204313951 ACTGTCTCATGCAGG
i calJac3.chr2             C 0 I 4
s saiBol1.JH378155          16010752 15 +  16417988 ACTGTCGCGTGCAGG
i saiBol1.JH378155         C 0 I 4
e aotNan1.NW_018503740v1    25425692 18 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       94099 75 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=323813.000000
s hg38.chr5_KI270793v1_alt     65930 58 +    126136 CCTCGAGTTTCCACCACAGGAAGGTGCAGGAC-GCAGGCAGAGGCCGAGAGACTGGAAC
s panTro5.chr5             181329424 58 - 181907262 CCTCGAGTTTCCACCACAGGAAGGTGCAGGAC-GCAGGCAGAGGCCGAGAGACTGGAAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049855 58 - 183735486 CCTCGAGTTTCCACCACAGGAAGGTGCAGGAC-GCAGGCAGAGGCCGAGAGACTGGAAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      138566 58 +    698298 CCTGGAGTTTCCACCACAGGAAGGTGCAGGAT-GCAGGCAGAGACCGAGAGACTGGAAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120567949 59 - 121039945 CCTTGAGTTTCCACCACAGGAAGGTGCAGGGCTGCAGGCAGAGGCCAAAAGACCCGAAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179522616 59 - 180051392 CCTCGAGTTTCTGCCACAGGAAGGTGCAGGGCGGCAGGCCGAGGCGGAGAGACCCGAAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181256336 59 - 181584905 CCTCGAGTTTCTGCCGCAGGAAGGTGCAGGGCGGCAGGCCGAGGCGGAGAGACCCGAAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      257524 59 -   1764207 CCTCGAGTTTCTGCCACAGGAAGGTGCAGGGCTGCAGGCCGAGGCGGAGAGACCCGAAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      268168 59 -  16742782 CCTCGAGTTTCTGCCACAGGCAGGTGCAGGGCTGCAGGCCGAGGCGGAGAGACCCGAAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90571386 59 -  91010382 CCTCGAGTTTCTGCCACAGGAAGGTGCAGGGCTGCAGGCCGAGGCGGAGAGACCCGAAC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      195050 58 -    514179 CCTCGAGTTTCTGCCACAGGAAGGTGCAGGGCTGCAGGCTGAGGCAGAGA-ACCCGAAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203850490 58 + 204313951 CCTCAAGTCTCTGCCACCGGAAGGCGCCAGGCTGCACGCCGAGGCGGAGAGACATGGG-
i calJac3.chr2             I 4 C 0
s saiBol1.JH378155          16010771 53 +  16417988 CCTC-AGTCTCTGCC-CCGGAAGGTGCC-GGCCGCACGCCGAGGC--CGAGACATGGG-
i saiBol1.JH378155         I 4 C 0
s aotNan1.NW_018503740v1    25425710 58 -  25620257 CCTCGAGTCTCTGCCACCGGAAGGCGCCGGGCTGCACGCCGAGGCCGAGAGACAGGGG-
i aotNan1.NW_018503740v1   I 18 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       94099 75 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=1224373.000000
s hg38.chr5_KI270793v1_alt     65988 152 +    126136 ATCAACCGAAGCAGCAGC--TCATGTCACAATGGAAACCTGGACAGCTGACAGGTCAGCCAAGGATGGAGGAATGGCTAAATAAGCCCAGTGCCTTCCAGAATGTTCCTGCCTCAGAAGATTATACAGCCAGTGAGGTACATGGATGATAGACA
s panTro5.chr5             181329482 152 - 181907262 ATCAACCGAAGCAGCAGC--TCATGTCACAATGGAAACCTGGACAGCTGACAGGTCAGCCAAGGATGGAGGAATGGCTAAATAAGCCCAGTGCCTTCCAGAACGTTCCTGCCTCAGAAGATTATACAGCCAGTGaggtacatggatgatagata
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183049913 152 - 183735486 ATCAACCGAAGCAGCAGC--TCATGTCACAATGGAAACCTGGACAGCTGACAGGTCAGCCAAGGATGGAGGAATGGCTAAATAAGCCCAGTGCCTTCCAGAACGTTCCTGCCTCAGAAGATTATACAGCCAGTGAGGTACATGGATgatagata
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      138624 152 +    698298 ATCAACCGAAGCAGCAGC--TCATGTCACAATGGACACCCGGACAGCTGACAGGTCACCCAAGGATGGAGGAATGGCTAAATAAGCCCAGTGCCTTCCAGAACATTCCTGCCTCAGAAGATTATACAGCCAGTGAGGTACATGGATGATAGATA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120568008 152 - 121039945 ATCAACCCAAGCAGCAGC--TCATGCCACAGTGGAAACCCGGACAGCTGACAGGTCAGCCAAGGATGGAGGAATGGCTAAATAAGCCCAGTGCCTTCCAGAACGTTCCTGCCTCAGAAGATTATACAGCCAGTGAGGTACatggatgatagata
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179522675 149 - 180051392 ATCAACCGAA---GCAGC--TCGTGTCACGGTAGAAACCCGGACAGCTGACAGGTCAGCCAAGGATCGAGGAATGGCTAAATAAGCCCAGTACCTTCCAGAACATTCCTGCCTCAGAAGATTATACAGCCAGTGaggtagacagatggtagata
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181256395 152 - 181584905 ATCAACCGAAGCCGCAGC--TCGTGTCACGGTAGAAACCCGGACAGCTGACAGGTCAGCCAAGGATCGAGGAATGGCTAAATAAGCCCAGTACCTTCCAGAACGTTCCTGCCTCAGAAGATTATACAGCCAGTGaggtagacagatggtagata
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      257583 152 -   1764207 ATCAACCGAAGCAGCAGC--TCGTGTCACGGTAGAAACCCGGACAGCTGACAGGTCAGCCAAGGATCGAGGAATGGCTAAATAAGCCCAGTACCTTCCAGAACGTTCCTGCCTCAGAAGATTATACAGCCAGTGaggtagacagatggtagata
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      268227 151 -  16742782 ATCAACCCAAGCAGCAGC--TCGTGTCACGGTAGAAACCCGGACAGCTGACAGGTCAGCC-AGGATTGAGGAATGGCTAAATAAGCCCAGTACCTTCCAGAACGTTCCTGCCTCAGAAGATTATACAGCCAGTGAGGTAGACagatggtagata
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90571445 152 -  91010382 ATCAACCGAAGCAGCAGC--TCGTGTCACGGTAGAAACCCGGACAGCTGACAGGTCAGCCAAGGATCGAGGAATGGCTAAATAAGCCCAGTACCTTCCAGAACGTTCCTGCCTCAGAAGATTATACAGCCAGTGAGGTACACGGATGATagata
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      195108 152 -    514179 ATCAACCAAAGCAGCAGC--TCGTGTCACGGTAGAAACCCGGACAGCTGACAGGTCAGCCAAGGATCGAGGAATGGCTAAGTAAGCCCAGCACCTTCCAGAACGTTCCTGCCTCAGAAGATTATACAGCCAGTGAGGTACACagatgatagata
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203850548 154 + 204313951 ATCGACCGAAGCCGCAGCATGAGTGTCCTCATGGAAACCTGGACAGCTGACTTGTCCACCAACGATCACGGAATGGCTAAAGAAGCCCGATACCTTCCAGAACATTCCTGCCTCAGAAGATTATACAGCCagttaggtacacggatgatagaca
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16010824 154 +  16417988 ACCCACCGAGGCAGCAGCATGCGTGTCCCGATGGAAACCTGGACAGCCAACGTGTCCACCAACCATCATGGAATGGCTAAAGAAGCCCGGTACCTTCCAGAACGTTCCTGCCTCGGAAGATTATACAGCCAGTGAGGTACATGGATGATAGGCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       94174 154 +    298490 ATCGACCAAAGCAGCAGCACGCGCGTCCTGATGGAAACCTGGACAGCTGACATGTCCACCAATGATCATGGAATGGCTAAAGAAGCCCGGTACTTTCCAGAACACTCCTGCCTCAGAAGATTATACAGCCTGTTAGGTACATGGATGATAGACA
i cebCap1.NW_016108158v1   I 75 I 213
s aotNan1.NW_018503740v1    25425768 154 -  25620257 ATCGACCGAAGCAGCAGCACGCGTGTCCTGATGGAAACCTGGACAGCTGACATGTCCGCCAACGATCATGGAATGGCTGAAGAAGCCCGGTACCTTCCAGAATGTTCCTGCCTCAGAAGATGATACAGCCAGTTAGGTACACAGGTGATagaca
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=1004488.000000
s hg38.chr5_KI270793v1_alt     66140 164 +    126136 AACATACAGATGgagagacatagagatatagaaagggagagagagGTAGATATAGGTAAAGATGAAGATACAGGTGATTCATGGATACAGAAATTGAGACGGATGATAGATGGATGGGTAAATGGACAGATGAATAGATGATAGATGGACAGACAGGAGGGAAA
s panTro5.chr5             181329634 164 - 181907262 aacatacagagggagagacatagagatatagaaagagagagagaggtacatataggtaaagatgaagatacaggtgattcatggatacagaaattgagacagatgatagatggatgggtaaatggacagatgaatagatgatagatggacagacagGAGGGAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183050065 164 - 183735486 aacatacagagggagagacatagagatatagaaagagagagagagGTACATATAGGTAAAGATGAAGATACAGGTGATTCATGGATACAGAAATTGAGACGGATGATAGATGGATGGGTAAATGGACAGATGAATAGATGATAGATGGACAGACAGGAGGGAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      138776 164 +    698298 AACATACAGATGgagagacatagagatatagaaagagaaagagagGTAGATATAGGTAAAGATGAAGATACAGGTGATTCATAGATACAGAAATTGAGACGGATGATAGATGGATGGGTAAATGGACAGAAGAATAGATGATAGATGGACAGACAGGAGGGAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120568160 149 - 121039945 aacatacagatggagagacatagtgatacaaaaagagagagagaggtagatataggtaaagatgaagatacaggtgattcatggatacagaaattgagacggatgatagaCGGATGGGTAAATGGAC---------------AGATGGACAGACAGGAGGGAAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179522824 156 - 180051392 aacatagagatgaagagacatagagata--------gagagagaggcagatatacgtaaagatgaagatacgggtgattcatggatacagaaatcaagacggatgatagaccgatgggtaaatggacagatgaatagatgatagatggacagacagGAGGGAAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181256547 155 - 181584905 aacatagagatgaagagacatagagata--------gagagagaggcagatatacgtaaagatgaagata-gggtgattcatggatacagaaatcaagacggatgatagaccgatgggtaaacggacagatgaatagatgatagatggacagacagGAGGGAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      257735 156 -   1764207 aacatagagatgaagagacatagagata--------gagagagaggcagatatacgtaaagatgaagatacgggtgattcatggatacagaaatcaagacggatgatagaccgatgggtaaatggacagatgaatagatgatagatggacagacagGAGGGAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      268378 154 -  16742782 aac--agagatgaagagacatagagata--------gagagagaggcagatatacgtaaagatgaagataCGGGTGATTCATGGATACAGAAATCAAGACGGATGATAGACCGATGGGTAAATGGACAGATGAATAGATGATAGAGGGACAGACAGGAGGGAAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90571597 156 -  91010382 aacatagaaatgaagagacatagagata--------gagagagaggcagatatacgtaaagatgaagataCGGGTGATTCATGGATACAGAAATCAAGACGGATGATAGACCGATGGGTAAATGGACAGATGAATAGACGACAGATGGACAGACAGGAGGGAAA
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      195260 156 -    514179 aacatagagatgaagagacatagagata--------gagagagaAGCAGATATACGTAAAGATGAAGATACGGGTGATTCATGGATACAGAAATCAAGACGGATGATAGACCGATGGGTAAATGGACAGATGAATAGATGACAGATGGACAGACAGGAGGGAAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203850702 151 + 204313951 ------gagctggatagatatagaaatata------gaaagagaggcagatgaaattaaagatgaagatacaggtgattcagggatacagaaatccagatgcatgatagacggatgggt-aatggacagatgaataggtggtagatggacagacagGAGGGAAA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16010978 129 +  16417988 ------GAGCTGGATAGGTATAGGAACACA------G---------------------AAGATGAAGATGCAGGTGATTCAGGGATACAGAAATCCAGATG-ATGACAGACGGATGGGT-AATGGACAGATGAACAGAGGGTAGATGGACAGACAGGAGGGAAA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25425922 151 -  25620257 ------gagctggatagatatagaaataca------gaaagagaGGCAGACGTAGTTGAAGATGAAGATACAGGTGACTCAGGGATACAGAAATCCAGATGGATGACAGACGGATGGGT-AATGGACAGATGAATAGATGGTAGCCGGACAGACAGGAGGGAAA
i aotNan1.NW_018503740v1   C 0 I 914
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       94328 213 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=771909.000000
s hg38.chr5_KI270793v1_alt     66304 144 +    126136 TTGGTTGGGAGATGATCAGATAAGTGGTCGATAGAGGGAGGTAAACAGACAGATGACAGACATGGACAGATTGATACAGACAGGTGATAGATGATAGCTGATTGATAGAAAGTTGGGGACAGAGAGAGAGGGCTGGACACAGAT
s panTro5.chr5             181329798 144 - 181907262 TTGGTTGGGAGATGATCAGATAAGTGGTCGATAGAGGGAGGTAAACAGACAGATGACAGACATGGACAGATTGATACAGACAGGTGATAGATGATAGCTGATTGATAGAAAGTTGGAGACAGAGAGAGAGGGCTGGACACAGAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183050229 144 - 183735486 TTGGTTGGGAGATGATCAGATAAGTGGTCGATAGAGGGAGGTAAACAGACAGATGACAGACATGGACAGATTGATACAGACAGGTGATAGATGATAGCTGATTGATAGAAAGTTGGAGACAGAGAGAGAGGGCTGGACACAGAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      138940 140 +    698298 TTGGTTGGGAGATGATCAGATAAGTGGTTGATAGAGGGAGGT----AGACAGATGACAGACATGGACAGATTGATACAGACAGGTGATAGATGATAGCTGATTGATAGAAAGTTGGGGACAGAGAGAGATGGCTGGGCACAGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120568309 144 - 121039945 TTGGTTGGGAGATGATCAGATAGATGGTCGATAGACGGGGGTAAACAGACAGATGACAGACACGGACAAATGGATACAGACAGGTGATAGATGATAGATGATTGACAGAAAGGTGGGGACAGAGAGAGATGGCCGGACGCAGAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179522980 143 - 180051392 CTGGTTGGGAGATGATCAGGTAAGTGGTCGATAGAGGGAGGTAAACAGACAGAGGACAGACACGGACAGATGGATACAGACAGGTGATAGACGATAGATGATTGACAGAAAGGTGGGG-CAGAGAGAGATGGCTGGACGTAGAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181256702 143 - 181584905 CTGGTTGGGAGATGATCAGGTAAGTGGTCGATAGAGGGAGGTAAACAGACAGAGGACAGACACGGACAGATGGATACAGACAGGTGATAGACGATAGATGATTGACAGAAAGGTGGGG-CAGAGAGAGATGGCTGGACGTAGAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      257891 143 -   1764207 CTGGTTGGGAGATGATCAGGTAAGTGGTCGATAGAGGGAGGTAAACAGACAGAGGACAGACACGGACAGATGGATACAGACAGGTGATAGACGATAGATGATTGACAGAAAGCTGGGG-CAGAGAGAGATGGCTGGACGTAGAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      268532 143 -  16742782 CTGGTTGGGAGATGATCAGGTAAGTGGTCGATAGAGGGAGGTAAACAGACAGAGGACAGACACGGACAGATGGATACAGACAGGTGATAGACGATAGATGATTGACAGAAAGGTGGGG-CAGAGAGAGATGGCTGGACGTAGAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90571753 143 -  91010382 CTGGTTGGGAGATGCTCAGGTAAGTGGTCGATAGAGGGAGGTAAACAGACAGAGGACAGACACGGACAGATGGATACAGACAGGTGATAGATGATAGATGATTGACAGAAAGGTGGGG-CAGAGAGAGATGGCTGGACGTAGAG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      195416 143 -    514179 CTGGTTGGGAGATGCTCAGGTAAGTGGTCGATAGAGGGAGGTAAACAGACAGAGGACAGACACGGGCagatggatacagacaggtaatagatgatagatgattgaCGGAAAGGTGGGG-CAGAGAGAGATGGCTGGACATAGAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203850853 129 + 204313951 CTGGTTGAGAGATGATGGGTT-----GTTGATAGATGGAGGTAAACAGACAGATGACGGGCATCAACGGATGGTTAAGGACAAGTGAT---TGGCAGGTGACAGACAGGAAGGTGGGGATAGAGAGCGATGGCGGAA-------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16011107 128 +  16417988 CTGGCTGAGAGGTGACAGGGT-----GTCGACAGATGGAGGAAAACAGACAGATGACGGGCACCGGC-AATGGTTACAGACAAGTGAT---TGGCAGGTGACTGACAGAAAGGTGGGGTAAGACAGCGATGGCGGAA-------
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       94328 213 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=691814.000000
s hg38.chr5_KI270793v1_alt     66448 105 +    126136 GGCAGGCAGCTCTGGGTGAGGCCTTGCCGGGCAGACCCCAGCGTGGGCGCTGCCTCCCAGGGAGACCATAGACATGATCCATGAGAGTGCGGTGACCCTTCAAGG
s panTro5.chr5             181329942 105 - 181907262 GGCAGGCAGCTCTGGGTGAGGCCTTGCGGGGCAGACCCCAGCGTGGGTGCTGCCTCCCAGGGAGACCATAGACATGATCCATGAGAGCGCGGTGACCCTTCAAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183050373 105 - 183735486 GGCAGGCAGCTCTGGGTGAGGCCTTGCGGGGCAGACCCCAGCGTGGGTGCTGCCTCCCAGGGAGACCATAGACATGATCCATGAGAGCGCGGTGACCCTTCAAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      139080 105 +    698298 GGCAGGCAGCTCTGGGTGAGGCCTTGCGGGGCAGACCCCAGCGTGGGCGCTGCCTCCCAGGGAGACCATAGACATGATCCGTGAGAGCGCAGTGACCCTTCAAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120568453 104 - 121039945 GGCAGGCAGCTGTGGGCGAGGCCTTGTGGGGCAGACCCCACCGTGGGCACTGCCTCCCAGGGAGACTATAGATGTGATCCGTG-GAGCCCAGTGACCCTTCAAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179523123 104 - 180051392 GGCAGGCAGTTCTGGGCAAGGCCTTGCAGGGCAGACCCCA-CGTGGGCACTGCCTCCTGGGGAGACTATAGATGTGATCCGTGAGAGCCCAGTGACCCTTCAAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181256845 104 - 181584905 GGCAGGCAGTTCTGGGCAAGGCCTTGCAGGGCAGACCCCA-CGTGGGCACTGCCTCCTGGGGAGACTATAGATGTGATCCGTGAGAGCCCAGTGACCCTTCAAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      258034 104 -   1764207 GGCAGGCAGTTCTGGGCAAGGCCTTGCAGGGCAGACCCCA-CGTGGGCACTGCCTCCTGGGGAGACTATAGATGTGATCCGTGAGAGCCCAGTGACCCTTCAAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      268675 104 -  16742782 GGCAGGCAGCTCTGGGCAAGGCCTTGCAGGGTAGACCCCA-CGTGGGCACTGCCTCCCGGGGAGACTATAGACGTGATCCGTGAGAGCCCAGTGACCCTTCAAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90571896 104 -  91010382 GGCAGGCAGCTCTGGGCAAGGCCTTGCAGGGCAGACTCCA-TGTGGGCACTGTCTCCCCGGGAGACTACAGACATGATCCGTGAGAACCCAGTGACCCTTCAAGG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      195559 104 -    514179 GGCAGGCAGTTCTGGGCAAGGCCTTGCAGGGCAGACCCCA-CGTGGGCACTGCCTCCCAGACACACTATAGACGTGATCAGTGAGAGCCCAGTGACCCTTCAAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203850982  90 + 204313951 GGCAGGCAGCTCT---------------GGGCAGATCTCGCCGTGGGTCCCTCCTCCTGGGGAGATTACAGACATGATCCGTGAGAGCCCAGTGGCCCTTCAAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16011235 104 +  16417988 GGCAGGCAGCTCTGGGTGAGGCCCCAC-GGGCAGACCTCACCGTGGGCACCTCCTCCCGGGGAGATTACAGACATGATCCGTGAGAGCCCAGTGGCTCTTCAAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       94541 104 +    298490 GGCAGGCAGCCCTGGGTGAGGCCCCAT-GGGCAGACCTCGTCGTGGGCACCTCCTCCCGGGGAGATTACAGACACGATCCGTGAGAGCCCCGTGGCCCTTCAAGG
i cebCap1.NW_016108158v1   I 213 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=235406.000000
s hg38.chr5_KI270793v1_alt     66553 39 +    126136 ATGTTC--------ACAGTCTTAATAGCTGCATGAGAAAATGAGAAG
s panTro5.chr5             181330047 39 - 181907262 ATGTTC--------ACAGTCTTAATAGCTGCATGAGAAAATGAGAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183050478 39 - 183735486 ATGTTC--------ACAGTCTTAATAGCTGCATGAGAAAATGAGAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      139185 39 +    698298 ATGTTC--------ACAGTCTTAATAGCTGCGTGAGAAAATGAGAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120568557 37 - 121039945 ATGTT----------CAGTCTTAATAACTGCATGAGAAAATGAGAAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179523227 47 - 180051392 ATGTTCACAGTCTTACAGTCTTAATAACTGCATGAGAAAATGAGATG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181256949 47 - 181584905 ATGTTCACAGTCTTACAGTCTTAATAACTGCATGAGAAAATGAGATG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      258138 47 -   1764207 ATGTTCACAGTCTTACAGTCTTAATAACTGCATGAGAAAATGAGATG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      268779 39 -  16742782 ATGTTC--------ACAGTCTTAATAACTGCATGAGAAAATGAGATG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90572000 39 -  91010382 ATGTTC--------ACAGTCTTAATAACTGCATGAGAAAATGAGAAG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      195663 39 -    514179 ATGTTC--------ACAGTCTTAATAACTGCATGAGAAAATGAGAAG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16011339 39 +  16417988 ATGTTC--------ACAGGCTTACTAACTGCATGAGAAAATGAGAAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       94645 39 +    298490 ATGTTC--------ACAGTCTCACTAACTGCATGAGAAGATGAGAAG
i cebCap1.NW_016108158v1   C 0 I 64
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e calJac3.chr2             203851072  0 + 204313951 C
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=158070.000000
s hg38.chr5_KI270793v1_alt     66592 29 +    126136 ACCGTGTTAATAAGCAAAACAAGCAGCTT
s panTro5.chr5             181330086 29 - 181907262 ACCGTGTTAATAAGCAAAACAAGCAGCTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183050517 29 - 183735486 ACCGTGTTAATAAGCAAAACAAGCAGCTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      139224 29 +    698298 ACCATGTTAATAAGCAAAACAAGCAGCTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120568594 29 - 121039945 GCCGTGTTAATAAGCAGAACAAGCAGCTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179523274 29 - 180051392 GCCGTGTTAATAAGCAAAACAAGCAGCTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181256996 29 - 181584905 GCCGCGTTAATAAGCAAAACAAGCAGCTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      258185 29 -   1764207 GCCGTGTTAATAAGCAAAACAAGCAGCTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      268818 28 -  16742782 GCCATGTTAATAAGCAAAACAAGCAGC-T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90572039 29 -  91010382 GCCGTGTTAATAAGCAAAACAAGCAGCTT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      195702 29 -    514179 GCCATGTTAATAAGCAAAACAAGCAGCTT
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16011378 29 +  16417988 GTCGTGTTGATAAACAAAACAGGTAGCTT
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       94684 64 +    298490 I
e calJac3.chr2             203851072  0 + 204313951 C
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=1436698.000000
s hg38.chr5_KI270793v1_alt     66621 301 +    126136 AAGAAGCTGGACAggccaggtgcggtggctcaggcctgtaatcccagcactttgggaggccaaggcgggcggatcaagaggtcaggagattgagaccatcctggccaacatggtgaaaccccgtctgtactaaaaatacaaaaattagctgggtatggtggcgcatatctgtagtcccagctactcaggaggctgaggtaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcgcgccattgcactgcagactgggcgacagagtgagacactgtctc----a-aaaaaaa
s panTro5.chr5             181330115 302 - 181907262 AAGAAGCTGGACAggccaggtgtggtggctcaggcccgtaatcccagcactttgggaggccaaggcgggcggatcaagaggtcaggagattgagaccatcctggccaacatggtgaaaccccgtctgtactaaaaatacaacagttagctgggtatggtggcgcatatctgtagtcccagctactcaggaggctgaggtaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcgcgccattgcactgcagactgggcgacagagtgagacactgtctc---aa-aaaaaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183050546 301 - 183735486 AAGAAGCTGGACAggccaggtgtggtggctcaggcctgtaatcccagcactttgggaggccaaggcgggcggatcaagaggtcaggagattgagaccatcctggccaacatggtgaaaccccgtctgtactaaaaatacaacaattagctgggtatggtggcgcatatctgtagtcccagctactcaggaggctgaggtaggataatcgcttgaacctgggaggcagaggttgcagtgagccaagatcgcgccattgcactgcagactgggcgacagagtgagacactgtctc----a-aaaaaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      139253 301 +    698298 AAGAAGCTGGACAggccaggtgcggtggctc-ggcctgtaatcccagcactttgggaggccaaggcgggcagatcaagaggtcaggagattgagaccatcctggctaacatggtgaaaccccgtctgtactaaaaatacaaaaattatctgggtatggtggtgcatatctgtagtcccagctactcaggaggctgaggtaggagaatcgcttgaacctgggaggcagaggttgcagtgagccaagatcgcgccattgcactgcagactgggcgacagagtgagacactgtctc---aa-aaaaaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120568623 303 - 121039945 AAGAAGCTGGACAggccaggtgcagtggctcaggcctgtaatcccagcgccttgggaggccaaggtgagaggatcaagaggtcaggagatcgagaccatcctggccaacacggtgaaaccccgtctgtactaaaaatacaaaaattagctgggtatggtggcacacacctgtagtcccagctactcaggaggccgagacaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgcgccattgcactgcagattgggtgacagagtgagacactgtctc---aacaaaaaaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179523303 305 - 180051392 AAGAAGCTGGACAggccgggcacggtggctcaggcctgtaatcccagcactttgggaggccaaggcgggcagatcaggaggtcaggagattgagaccatcctggccaacatggtgaaaccctgtctgtactaaaaatacaaaaattagctgggtgtggtggtgcacacctgtagtcccagctactcaggaggctgagacaggagaatcgcttgaacctgggaggcaaaggttgcagtgagccgagatcgtgccattgcactccagactgggcaacagagtgagacactgtctcaaaaa-aaaaaaa
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181257025 304 - 181584905 AAGAAGCTGGACAggccgggcacggtggctcaggcctgtaatcccagcactttgggaggccaaggcgggcagatcaggaggtcaggagattgagaccatcctggccaacatggtgaaaccctgtctgtactaaaaatacaaaaattagctgggtgtggtggtgcacacctgtagtcccagctactcaggaggctgagacaggagaatcgcttgaacctgagaggcaaaggttgcagtgagccgagatcgtgccattgcactccagattgggcaacagagtgagacactgtctc-aaaa-aaaaaaa
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      258214 305 -   1764207 AAGAAGCTGGACAggccgggcacggtggctcaggcctgtaatcccagcactttgggaggccaaggcgggcagatcaggaggtcaggagattgagaccatcctggccaacatggtgaaaccctgtctgtactaaaaatacaaaaattagctgggtgtggtggtgcacacctgtagtcccagctactcaggaggctgagacaggagaatcgcttgaacctgggaggcaaaggttgcagtgagccgagatcgtgccattgcactccagactgggcaacagagtgagacactgtctcaaaaa-aaaaaaa
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      268846 303 -  16742782 AAGAAGCTGGACAggccgggcacggtggctcaggcctgtaatcccagcactttgggaggccaaggcgggcagatcaggaggtcaggagattgagaccatcctggccaacatggtgaaaccctgtctgtactaaaaatacaaaaattagctgggtgtggtggtgcacgcctgtagtcccagctactcaggaggctgagacaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgtgccattgcactccagactgggcaacagagtgagacactgtctc--aaa-aaaaaaa
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90572068 301 -  91010382 AAGAAGCTGGACAggccgggcacagtggctcaggcctgtaatcccagcactttgggaggccaaggcgggcagatcaggaggtcaggagattgagaccatcctggccaacatggtgaaaccctgtctgtactaaaaatacaaaaattagctgggtgtggtggtgcacgcctgtagtcccagctacttaggaggctgagacaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgagatcgtgccattgcactccagactgggcaacagtgtgagacactgtctc----a-aaaaaaa
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      195731 301 -    514179 AAGAAGCTGAACAggccaggcacagtggctcaggcctgtaatcccagcactttggaaggccaaggcaggcagatca--aggtcaggagattgagaccatcctggccaacatggtgaaaccctgtctgtactaaaaatagaaaaattagctgggtgtggtggtgcacgcctgtagtcccagctactcaggagactgagacaggagaatcgcttgaacctgggaggcagaggttgcagtgagccgagattgtgccattacactccagactgggtgacagagtgagacactgtctc--aaa-aaaaaaa
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       94684  64 +    298490 I
e saiBol1.JH378155          16011407   0 +  16417988 C
e calJac3.chr2             203851072   0 + 204313951 C
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=239716.000000
s hg38.chr5_KI270793v1_alt     66922 38 +    126136 aagaaGCTGGACAAggctgggcatgatggctcacacct
s panTro5.chr5             181330417 38 - 181907262 aagaaGCTGGACAAggctgggcatgatggctcacacct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183050847 38 - 183735486 aagaaGCTGGACAAggctgggcatgatggctcacacct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      139554 38 +    698298 aagaaGCTGGACAAggctgggcatgatggctcacacct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120568926 38 - 121039945 aagaaGCTGGACAAggccaagcatgatggctcacacct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179523608 38 - 180051392 aagaaGCTGGACAAggccaggcatgatggctcacacct
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181257329 38 - 181584905 aagaaGCTGGACAAggccaggcatgatggctcacacct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      258519 38 -   1764207 aagaaGCTGGACAAggccaggcatgatggctcacacct
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      269149 38 -  16742782 aagaaGCTGGACAAggccaggcatgatggctcacacct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90572369 38 -  91010382 aagaaGCTGGACAAggccaggcatgatggctcacacct
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      196032 38 -    514179 gagaaGCTGGACAAggccaggcatgatggctcacacct
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203851072 38 + 204313951 AAGAAGCTGGGTGAggccgggtgcagtagctcacgcct
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16011407 36 +  16417988 AAGAAGCTGGATGAggccaggtatagcagctcaca--t
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       94684 64 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=2543641.000000
s hg38.chr5_KI270793v1_alt     66960 405 +    126136 ggaatcccagcaccttaggaggccagggtgggaggatcatttgaggccaggagtttaagaccagtctgagcaacatggcaaaaccctgtctctacaaaataaataataagaagaattagccaggcatggtggcatgtgcctgtggtcccagctactggggaggctgaggtgggacaatggcttgagctcagggtggttgaggctgcagtgagctgagattgcaccacggcactccagcctgggtgacagagtga-gaccctgtctc---------aaaaaaaaaaaaaa-aaaaa---------------aggcaaaggaaAGGAAATGCAAACCCACAGAGGAGTAATAAACATTCTACCAATTAAAATGCACCATGTGGCAGCCCCACAGAGGAAGAGATCTCTGTCTGCTGTGTTCCTTGAGCCTCAG
s panTro5.chr5             181330455 413 - 181907262 ggaatcccagcaccttaggaggccaaggtgggaggatcgtttgaggccaggagtttaagaccagtctgagcaacatggcaaaaccctgtctctacaaaataaataataagaagaattagccaggcatggtggcatgtgcctgtggtcccagctactggggaggctgaggtgggacaatggcttgagctcagggtggttgaggctgcagtgagctgagattgcaccacggcactccagcctgggtgacagagtga-gaccctgtctc---------aaaaaaaaaaaaaa-aaaaaa-------aaaagaTAGGCAAAGGAAAGGAAATGCAAACCCACAGAGGAGTAATAAACATTCTACGAATTCAAATGCACCTTGTGGCAGCCCCACAGAGGAAGAGATCTCTGTCTGCTGTGTTCCTTGAGCCTCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183050885 408 - 183735486 ggaatcccagcaccttaggaggccaaggtgggaggatcgtttgaggccaggagtttaagaccagtctgagcaacatggcaaaaccctgtctctacaaaataaataataagaagaattagccaggcatggtggcatgtgcctgtggtcccagctactggggaggctgaggtgggacaatggcttgagctcagggtggttgaggctgcagtgagctgagattgcaccacggcactccagcctgggtgacagagtga-gaccctgtctc---------aaaaaaaaaaaaaa-aaaaa------------aaTAGGCAAAGGAAAGGAAATGCAAACCCACAGAGGAGTAATAAACATTCTACCAATTAAAATGCACCTTGTGGCAGCCCCACAGAGGAAGAGATCTCTGTCTGCTGTGTTCCTTGAGCCTCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      139592 412 +    698298 ggaatcccagcatcttagggggccaaggtgggaggatcgtttgaggccaggagtttaagaccagcctgagcaacatggcaaaaccctgtctctacaaaataaataagaagaagaattagccaggcatggtggcatgtgcctgtggtcccagctactggggaggctgaggtgggacaatggcttgagctcagggtggttgaggctgcagtgagctgagactgcaccacggcactccagcctgggtgacagagtga-gaccctgtctc---------aaaaaaaaaaaaaa-aaaaa--------aaaagaTAGGCAAAGGAAAGGAAATGCAAACCCACAGAGGAGTAATAAACATTCTACCAATTAAAATGCACCATGTGGCAGCCCCACAGAGGAAGATATCTCTGTCTGCTGTGTTCCTTGAGCCTCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120568964 404 - 121039945 ggaatcccagcaccttaggaggtcaaggtgggaggatcgtttgaggccaggagtttaagaccagcctgagcaacatggcagaaccctgtctctacaaaataaataataagcagaattagccaggtgcagtggcatgcgcctgtggtcccagctactggggaggctgaggtgggacgatggcttgagctcagggtggttgaggctgcagtgagctgagattgcaccactgcactccagcttgggtgacggagtta-gaccctgtgtc---------aaaaaaaaaaaaaa-ggcga----------------gacaaaggaaaGGAAATGCAAACCCACAGAGTAGTAATAAAGATTCTACCGATTAAAATGCCCCACATGGCGGCCCCACAGAGGAACAGATCTCTATCTGCTGTGCTCCCCGAGCCTCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179523646 407 - 180051392 ggaatcccagcaccttaggaggccaaggtgggaggatcgtttgaggccaggagtttaagaccagcctgagcaacatggcgaaaccatgtctctacaaaataaataataagaagaattagccaggcgtggtggcatatgcctgtggtcccagctactggggaggctgaggtgggaggatggcttgagctcagggtggtcgaggctgcagtgagctgagattgtagcacggcactccagcctgggtgacagagcaa-gaccctgtctc---------aaaaaaaaaaaaaa-aaaTG-------------CTAGACAAAGGACAGGAAATGCCAACCCACAGAGGAGTAATAAATATTCCACCAATTAAAATGCACCACGTGGTGGCCCCGCAGAGGAAGAGATCTCTGACTGCTGTGCTCCCTGAGGCTCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181257367 407 - 181584905 ggaatcccagcaccttaggaggccaaggtgggaggatcgtttgaggccaggagtttaagaccagcctgagcaacatggcgaaaccacgtctctacaaaataaataataagaagaattagccaggcgtggtggcatatgcctgtggtcccagctactggggaggctgaggtgggaggatggcttgagctcagggtggtcgaggctgcagtgagctgagattgtagcacggcactccagcctgggtgacagagcaa-gaccctgtctc---------aaaaaaaaaaaaaa-aaaTG-------------CTAGACAAAGGACAGGAAATGCCAACCCACAGAGGAGTAATAAATATTCCACCAATTAAAATGCACCACGTGGTGGCCCCACAGAGGAAGAGAGCTCTGACTGCTGTGCTCCCTGAGGCTCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      258557 406 -   1764207 ggaatcccagcaccttaggaggccaaggtgggaggatcgtttgaggccaggagtttaagaccagcctgagcaacatggcgaaaccatgtctctacaaaataaataataagaagaattagccaggcgtggtggcatatgcctgtggtcccagctactggggaggctgaggtgggaggatggcttgagctcagggtggtcgaggctgcagtgagctgagattgtagcacggcactccagcctgggtgacagagcaa-gaccctgtctc----------aaaaaaaaaaaaa-aaaTG-------------CTAGACAAAGGACAGGAAATGCCAACCCACAGAGGAGTAATAAATATTCCACCAATTAAAATGCACCACGTGGTGGCCCCGCAGAGGAACAGATCTCTGACTGCTGTGCTCCCTGAGGCTCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      269187 414 -  16742782 ggaatcccagcaccttaggaggccaaggtgggaggatcgtttgaggccaggagtttaagaccagcctgagcaacatggtgaaaccctgtctctacaaaataaataataagaagaattagccaggcgtggtggcatatgcctgtggtcccagctactggggaggctgaggtgggaggatggcttgagctcagggtggtcgaggctgcagtgagctgagattgtagcacggcactccagcctgggtgacagagcaa-gaccctgtctcaaaaaaaaaaaaaaaaaaaaaaa-aaaaG-------------CTAGACAAAGGACAGGAAATGCCAACCCACAGAGGAGTAATAAATATTCCACCAATTAAAATGCACCATGTGGCGGCCCCGCAGAGGAAGAGG--TCTGTCTGCTGTGTTCCCTGAGGCTCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90572407 404 -  91010382 ggaatcccagcaccttagaaggccaaggtgggaggatcgtttgaggccaggggtttaagaccagcctgagcaacatggcaaaaccatgtctctacaaaataaataataagaagaattagccaggcgtggtggcatatgcctgtggtcccagctactggggaggctgaggtgggaggatggcttgagctcagggtggtcaaggctgcagtgagctgagattgtaacacagcactccagcctgggtgacagagcaa-gaccctgtctc------------aaaaaaaaaaa-aaaaG-------------CTAGACAAAGGACAGGAAATGCCAACCCACAGAGGAGTAATAAAGATTCCACCAATTAAAATGCATCACGTGGTGGCCCCGCAGAGGCAGAGATCTCTGTCTGCTGTGTTCCCTGAGGCTCAG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      196070 321 -    514179 ggaatcccagcatcttaggaggccaaggtgggaggatcgtttgaggccagcagtttaagacccgcctgagcaacatggcaaaaccatgtctctacaaaata---aagaagaagaattagccaggcgtggtggcatatgcctatggtcccagctactggggaggctgaggtgggaggatgacttgagctcagggtggtcgaggctgcagtgagctgagatTATTA---------------------------------------CTC--------------------------------------------------------------------CCACAGAGGAGTAATAAAGATTCCACCAATTAAAATGCACCACGTGGCGGCCCCGCAGAGGAAGAGATCTCTGTCTGCTGTGTTCCCTGAAGCTCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203851110 406 + 204313951 ggaacccccgcaccttaggaggtcaaggtgggaggatcgtttgatgccaggggtttaagatcagcctgagcaacacagtgaaaccctgtctctaccccccacc-----aaaaaatttagctgggcgtggtggggcatgcctgtggtcccagctacaggggaggctgaggtgggaggatggcttgagctcagggagaaggaggctgcactgagctgagactgcaccacggcactccagcctgggtgacagagaaaggacactgcttc---------aaaataaagcaaga-aagaaGCCTCAGCAGCAGCTGGACAACAGGCGGGGAGCGCAAAC---CAGAGGAGGAATAAAGGTTCCGC-AGCTGACGGGCAGCAC---GTGGCCCCACAGAGGAGGAGAACTCCGT---CTGTGTTCCCTGAGCCTCGG
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16011443 410 +  16417988 ggaacccgagcacctt---aggtccaggtgggaggatcgtctgaggccaggagtctaagatcagcctgagcaacacggtgaaaccctgtctctactccccacc---aaaaaaaaacgagctgggtgtgctggggcatg-ctgtggtcccagctacgggagaggctgcggggagaagatagcctgagctcagggaggtcgaggctgcgctgagctgagatcgcaccac-gcactccagcctgggtgacggcgaaa-gacgctgcttc---------aaaatgaaacaaaagaagaaGCCGCAGCAGCAGCTGGACAAAACCCAGGGAGTGCAAAC--ACAGAGGAGGAATGAAGATTCCAC-GACTGAAATGCACCATGCGGCGGCCCCACGGAGAGGGGGAACTCCCTCTGCTGTGTTCCCTGAGCCTCAG
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       94748 414 +    298490 ggaaccccagcaccttaggaggtcaacgtgggaggatcgtttgaggccaagagtctaagatcagcctgagcaacgtggtgaaatcctgtctctaccccccacc----aaaaacaattagctgggtgtggtggggcctgcctgtggtcccagctacgggagaggctgaggtgggaggatggccggagctcagggaggtggaggctgcactgagctgagattgcaccac-gcactccagcctggatgacagagaaa-gaagctgcttc---------aaaataaaacaaaa-gagaaGCCGCAGCAGCAGCTAGACAAAAGACAGGGAGGGCAAACACACAGAGGAGGAATGAAGATTCCAC-AATTGAAATGCACCACGTGGCGGCCCCACAGAGGAAGAGAACTCCCTCTGCTGTGTTCCCTGAGCCTCGG
i cebCap1.NW_016108158v1   I 64 I 15
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=141837.000000
s hg38.chr5_KI270793v1_alt     67365 24 +    126136 GATGGTGAGAATCAATGGAGCCTT
s panTro5.chr5             181330868 24 - 181907262 GATGGTGAGAATCAATGGAGCTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051293 24 - 183735486 GATGGTGAGAATCAATGGAGCTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140004 24 +    698298 GATGGTGAGAATCAATGGAGCCTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569368 24 - 121039945 GACGGTGAGAATCAGTGGAGCCTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179524053 24 - 180051392 GACGGTGAGAATCAGTGGAGCCTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181257774 24 - 181584905 GACGGTGAGAATCAGTGGAGCCTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      258963 24 -   1764207 GACGGTGAGAATCAGTGGAGCCTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      269601 24 -  16742782 GACGGTGAGGATCAGTGGAGCCTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90572811 24 -  91010382 GACGGTGAGAATCAGTGGAGCCTC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      196391 24 -    514179 GACGATGAGAATCAGTGGAGCCTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203851517 24 + 204313951 CATGGCGGGAATCGCTGGAGCCTC
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16011854 24 +  16417988 CATGGCAGGAATCGGTGGAGCCTC
i saiBol1.JH378155         I 1 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95162 15 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=2541355.000000
s hg38.chr5_KI270793v1_alt     67389 387 +    126136 GTGGAGCCTTGCTGGTTTTTGAAATAATGAAACAGACAACACGACACGCTGGCACGAAAAAAGAGAAGCACAAATGGTTGATGTTGGAAACAGAAATGGGAGCAAAGGGACCCGGCGGAAACTCGGTATCTCCGTGTGCGTGTCCCGCGTGCATAACGCATGTACAGATGCAC--------------ACATacaaaacgaacaatttcctcgcaaaacataagctgtcaatcaaggagacgtgaaatccgaacagttttataaccaccgaagaacgggatccaggattaaaaacctG-CCACCCTCCAAGGAAACAAAGCCCCTCCTAAATTGTGCTGATGGCTGGGGCAGCCCATCCTCCGTGAGGACCACCAGAAAAGGGGCTGGAAAGGCAAAAGCACC
s panTro5.chr5             181330892 387 - 181907262 GTGGAGCCTCACTGGTTTTTGAAATAATGAAACAGACAACACGACACGCTGGCATGAAAAAAGAGAAGCACAAATGGTTGATGCTGGAAACAGAAATGGGAGCAAAGGGACCTGGCAGAAACTCGGTATCTCCGTGTGCGTGTCCCGCGTGCATAACGCATGTACAGATGCAC--------------ACATACAAAATGAACAATTTCCTCACAAAACATAAGCTGTCAATCAAGGAGACGTGAAATCCGAACAGTTTTATAACCACCGAAGAACCGGATCCAGGATTAAAAACCTG-CCACCCTCCAAGGAAACAAAGGCCCTCCTAAATTGTGCTGATGGCTGGGGCAGTCCATCCTCCATGAGGACCGCCGGAAAAGGGGCTGGAAAGGCAAAAGCACC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051317 387 - 183735486 ATGGAGCCTCGCTGGTTTTTGAAATAATGAAACAGACAACACGACACGCTGGCATGAAAAAAGAGAAGCACAAATGGTTGATGCTGGAAACAGAAATGGGAGCAAAGGGACCCGGCGGAAACTCGGTATCTCCGTGTGCGTGTCCCGCGTGCATAACGCATGTACAGATGCAC--------------ACATACAAAATGAACAATTTCCTCACAAAACATAAGCTGTCAATCAAGGAGACGTGAAATCCGAACAGTTTTATAACCACCGAAGAACCGGATCCAGGATTAAAAACCTG-CCACCCTCCAAGGAAACAAAGGCCCTCCTAAATTGTGCTGATGGCTGGGGCAGCCCATCCTCCGTGAGGACCACCGGAAAAGGGGCTGGAAAGGCAAAAGCACC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140028 387 +    698298 GTGGAGCCTCGCTGGTTTTTGAAATAATGAAACAGACAACACGACACGCTGGCATGAAAAAGGAGAAGCACAAATGGTTGATGCTGGAAACAGAAATGGGAGCAAAGGGACCCGGCGGAAACTCGGTATCTCCGTGTGCGTGTCCTGCATGCATAATGCATGTACAGATGCAC--------------ACACACAAAACGAACAATTTCCTCGCAAAACATAAGCTGTCAATCAAGGAGACGTGAAATCCGAACAGTTTTATAACCACCGAAGAACGGGATCCAGGATTAAAAACCTG-CCACTCTCCAAGGAAACAAAGCCCCTCCTAAATTGTGCTGATGGCTGGGGCAGCCCATCCTCCATGAGGACCACCAGAAAAGGGGCTGGAAAGGCAAAAGCACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569392 399 - 121039945 GTGGAGCCTCGCTGGTTTTTGAAATAATGAAAC--ACAACATGACACGCTGGCATGAAAAAGGAGAAGCACAAATGGTTGATGCTGGAAACAGAAATGGGAGCGAAGGGACCCAGCAGAAACTTGGTATCTCCGTGTGCATGTCCTGTGTGCATAACGCATGCACAGATGCACATATATGTGTGCAGACACacaaaacaaacaatttccttgcaaaatataagctgtcaatcaaggagacgtgaaatcctaacagttttataaccactgaagaacaggatccatgattaaaaacctG-CCACCCTCCAAGGAAACAAAGCCCCTCCTAAATTGTGCTGATGGCTATGGCAGCCCATCCTCCATGAGGACCACCAGAAAAGGGGCTGGAAAGGCAAAAGCACC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179524077 399 - 180051392 ATGGAGCCTCGCTGGTTTTTGAAATAATGAAACAGACGACATGACACGCTGGCATGAAAAAGGAGAAGCACAAATGGTTGATGCTGGAAACAAAAATGGGAGCGAAGGGACCCGGCAGAAACTCAGTATCTCCGTGTGTGTGTCCTGCATGCATAACTCATGTACAGATGCACATATATGTGTGCACACACACAAAACGAACAATTTCCTCGCAAAATATAAGCTGTCAATCAAGAAGACGTGAAATCCAAACCGTTTTATAACCACCGAAGAATGGGATCTGTTATTAAAATCCTG-CCACCCTCCAAGGAAACAAAGCCCCTCCTGAATCGTGTTTATAGCCGCGGTGGCCCATCCTCCATGAGAACCACCAGAAAAGGGGCTGGAAAGGCAAAAGCC--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181257798 399 - 181584905 ATGGAGCCTCGCTGGTTTTTGAAATAATGAAACAGACGACATGACACGCTGGCATGAAAAAGGAGAAGCACAAATGGTTGATGCTGGAAACAAAAATGGGAGCGAAGGGACCCTGCAGAAACTCAGTATCTCCGTGTGTGTGTCCTGCATGCATAACTCATGTACAGATGCACATATATGTGTGCACACACACAAAACGAACAATTTCCTCGCAAAATATAAGCTGTCAATCAAGAAGACGTGAAATCCAAACCGTTTTATAACCACCGAAGAATGGGATCTGTTATTAAAATCCTG-CCACCCTCCAAGGAAACAAAGCCCCTCCTGAATCGTGTTGATAGCCGCGGTGGCCCATCCTCCATGAGAACCACCAGAAAAGGGGCTGGAAAGGCAAAAGCC--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      258987 399 -   1764207 ATGGAGCCTCGCTGGTTTTTGAAATAATGAAACAGACGACATGACACGCTGGCATGAAAAAGGAGAAGCACAAATGGTTGATGCTGGAAACAAAAATGGGAGCGAAGGGACCCGGCAGAAACTCAGTATCTCCGTGTGTGTGTCCTGCATGCATAACTCATGTACAGATGCACATATATGTGTGCACACACACAAAACGAACAATTTCCTCGCAAAATATAAGCTGTCAATCAAGAAGACGTGAAATCCAAACCGTTTTATAACCACCGAAGAATGGGATCTGTTATTAAAATCCTG-CCACCCTCCAAGGAAACAAAGCCCCTCCTGAATCGTGTTTATAGCCGCGGTGGCCCATCCTCCATGAGAACCACCAGAAAAGGGGCTGGAAAGGCAAAAGCC--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      269625 399 -  16742782 GTGGAGCCTCGCTGGTTTTTGAAATAATGAAACAGACGACATGACACGCTGGCATGAAAAAGGAGAAGCGCAAATGGTTGATGCTGGAAACAAAAATGGGAGCGAAGGGACCCGGCAGAAACTCAGTATCTCCGTGTGTGTGTCCTGTGTGCATAACGCATGTACAGATGCACATGTATGTGTGCACACACACAAAACGAACAATTTCCTCGCAAAATATAAGCTGTCAATCAAGAAGACGTGAAATCCAAACCGTTTTATAACCACCGACGAATGGGATCTGTTATTAAAATCCTG-CCACCCTCCAAGGAAACAAAGCCCCTCCTGAATCGTGTTGATAGCCGCGGTGGCCCGTCCTCCATGAGCACCACCAGAAAAGGGGCTGGAGAGGCAAAAGCC--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90572835 397 -  91010382 ATGGAGCCTTGCTGGTTTTTGAAATAATGAAACAGACGACATGACACGCTGGCATGAAAAAGGAGAAGCACAAATGGTTGATGCTGGAAACAGAAATGGGAGCGAAGGGACCCGGCAGAAACTCAGTATCTCTGTGTGTGTGTCCTGCGTGCATAACGCATGTACAGATGCACATGTATGTGTGCACACACACACAA--AACAATTTCCTCACAAAATATAAGCTGTCAATCAAGATGACGTGAAATCCAAACCGTTTTATAACCACCGAAGAATGGGATCTGTTATTAAAATCCTG-CCACCCTCCAAGGAAACAAAGCCCCTCCTGAATCGTGTTGATAGCCGCGGTGGCCCATCCTCCATGAGAACCACCAGAAAAGGGGCTGGAAAGGCAAAAGCC--
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      196415 399 -    514179 ATGGAGCCTGGCTGGTTTTTGAAATAATGAAACGGACAACACGATACGCTGGCATGAAAAAGGAGAAGCACAAATGGTTGATGCTGGAAACAGAAATGGGAGTGAAGGGACTCGACAGAAACTCAGTATCTCTGTGTGTGTGTCCTACGTGCATAACGCATGTACAGATGCACATATATGTGTGCACACACACACAACGAACAATTTCCTCGCAAAATATAAGCTGTCAATCAAGAAGACGTGAAATCCAAACCGTTTTATAACCACCAAAGAATGGGATCTGTGATTAAAATCCTG-CCACCCTCCAAGGAAACAAAGCCCCTCCTGAATCGTGTTGATAGCCACGGTGGCCCATCCTCCATGAGAACCACCAGAAAAGGGGATGGAAAGGCAAAAGCC--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203851541 379 + 204313951 ----------ACGGGTCTCTGGAGCGACGAAACAGCC-----GACGTGCTGGCTTGAAAAGGGAGAAGCACAAACGGTCGATGCCAGAAACCGAGCCGGGAGCGGGGGACC-TGGCAGAACGTCGGCGTCTCCATGCATGTGCCCTGCGTGCGTAATGCGTGTACAGATGCAC--ACGTGTGTGCACACACACAAAGCGAACAATTTCCTACCAAAATAAAAGCCGTCAATCAAGAAGACATGAAATCTGGACAGCTGTATAACCACCGAAGCATGGGATCAAGGATGAAAAACCTGCCCACCCTCCAAGGAAACGAAGCCCCTCC----TTGTGCCAAC-GCCATGGTGGCCCGTGCTCCGTGAGAACCACCAGAAAAGGGGCTGGAAAGATAAAAGCACC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16011878 379 +  16417988 ----------ACGGGCTTTTGGAGCAACGAAACAGAC-----GACGCGCTGGCTTGAAAAAGGAGAAGCACAGACAGTTGACGCCGGAAACCGAGGTGGGAGCGGAGGGGC-CGGCAGAATGCCAGCGTCTCCGTGCGGGTGCCCTGCGTG-GTAATGCGTGTACAGATGCAC--ATGTGTGTGCACACACACAAAGCAAACGACTTCCTACCAAAACATAAGCCGTCAATCAAGGAAACGTGAAATCTGAACAGCTGTGTAACCA---AAGCATGGGCTCAAGGATGAAAAACCTGCCCACCCTGCCAGGAAACGAAGCCCCTCCGACATTGCACTGAT-GCCACGGTGGCCCGTGCTCCGTGAGAACCACCAGAAAAGGGGCTGGAAAGATAAAGGCAGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       95177 391 +    298490 GTGGAGCCTCACGGGTTTTTGAAGCAACTAAACAGAC-----GACCTGCTGGCTTGAAAAAGGGGAAGCACAAACGGTTGATGCCAGAAACCGCGATGGGAGCGGAGGGGC-CCGCAGAACGTCGGCGTCTCCGTGCGTGTGCCCTGCGTGCATAATGCATGTTCAGATGCAC--ACGTGTGTG--CACACACAGAGCGAACAACTTCCTACCAAAATATAGGCCGTCAATCAAGAAGACGTGAGATCTGAACAGCTGTGTGACAACCAAAGCATGGGATCAAGGATGAAAAACCTGCCCACCCTCCAAGGAAACGAAGCCCCTCCGACATTGTGCTGCT-GCTGCCGTGGCCCATGCTCTGTGAGAACCACCAGAAAAGGGGCTGGAAACATGAAAGCACC
i cebCap1.NW_016108158v1   I 15 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=7098.000000
s hg38.chr5_KI270793v1_alt     67776 1 +    126136 T
s panTro5.chr5             181331279 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051704 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120569791 1 - 121039945 T
i nomLeu3.chr6             C 0 T 57
s rheMac8.chr6             179524476 1 - 180051392 T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258197 1 - 181584905 T
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259386 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270024 1 -  16742782 T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573232 1 -  91010382 T
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      196814 1 -    514179 T
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203851920 1 + 204313951 T
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012257 1 +  16417988 T
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       95568 1 +    298490 T
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e gorGor5.CYUI01015805v1      140415 0 +    698298 C

a score=15600.000000
s hg38.chr5_KI270793v1_alt     67777 2 +    126136 GC
s panTro5.chr5             181331280 2 - 181907262 GC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051705 2 - 183735486 GC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140415 2 +    698298 GC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179524477 2 - 180051392 GC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258198 2 - 181584905 GC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259387 2 -   1764207 GC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270025 2 -  16742782 GC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573233 2 -  91010382 GC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      196815 2 -    514179 GC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203851921 2 + 204313951 GC
i calJac3.chr2             C 0 I 9
s saiBol1.JH378155          16012258 2 +  16417988 GC
i saiBol1.JH378155         C 0 I 9
s cebCap1.NW_016108158v1       95569 2 +    298490 GC
i cebCap1.NW_016108158v1   C 0 I 54
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=30371.000000
s hg38.chr5_KI270793v1_alt     67779 5 +    126136 TCAGC
s panTro5.chr5             181331282 5 - 181907262 TCAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051707 5 - 183735486 TCAGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140417 5 +    698298 TCAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179524479 5 - 180051392 TCAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258200 5 - 181584905 TCAGC
i macFas5.chr6             C 0 T 64
s macNem1.NW_012012389v1      259389 5 -   1764207 TCAGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270027 5 -  16742782 TCAGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573235 5 -  91010382 TCAGC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      196817 5 -    514179 TCAGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203851932 5 + 204313951 TCAGC
i calJac3.chr2             I 9 T 73
s saiBol1.JH378155          16012269 5 +  16417988 TCAGC
i saiBol1.JH378155         I 9 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=3952.000000
s hg38.chr5_KI270793v1_alt     67784 5 +    126136 GCCCC
s panTro5.chr5             181331287 5 - 181907262 GCCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051712 5 - 183735486 GCCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140422 5 +    698298 GCCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s saiBol1.JH378155          16012274 5 +  16417988 ATCCC
i saiBol1.JH378155         C 0 T 79
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e calJac3.chr2             203851937 73 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258205 64 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=807.000000
s hg38.chr5_KI270793v1_alt     67789 2 +    126136 AG
s panTro5.chr5             181331292 2 - 181907262 GG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051717 2 - 183735486 GG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140427 2 +    698298 GG
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012279 79 +  16417988 T
e calJac3.chr2             203851937 73 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258205 64 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=1000.000000
s hg38.chr5_KI270793v1_alt     67791 1 +    126136 G
s panTro5.chr5             181331294 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051719 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140429 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181258141 1 - 181584905 G
i macFas5.chr6             T 64 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012279 79 +  16417988 T
e calJac3.chr2             203851937 73 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C

a score=1500.000000
s hg38.chr5_KI270793v1_alt     67792 1 +    126136 C
s panTro5.chr5             181331295 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051720 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140430 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181258142 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s saiBol1.JH378155          16012200 1 +  16417988 C
i saiBol1.JH378155         T 79 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e calJac3.chr2             203851937 73 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C

a score=116801.000000
s hg38.chr5_KI270793v1_alt     67793 52 +    126136 GGCGGCCCATCCTCCGTGAGGACCACAGGTAAAGGGGCTGGAAAGGCAAAAG
s panTro5.chr5             181331296 52 - 181907262 GGCGGCCCATCCTCCGTGAGGACCACAGGTAAAGGGGCTGGAAAGGCAAAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051721 52 - 183735486 GGCGGCCCATCCTCCGTGAGGACCACAGGAAAAGGTGCTGGAAAGGCAAAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140431 52 +    698298 GGCGGCCCATCCTCCGTGAGGACCACCAGAAAAGGGGCTGGAAAGGCAAAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569735 52 - 121039945 GGCAGCCCATCCTCCATGAGGACCACCAGAAAAGGGGCTGGAAAGGCAAAAG
i nomLeu3.chr6             T 57 C 0
s macFas5.chr6             181258143 52 - 181584905 GGTGGCCCATCCTCCATGAGAACCACCAGAAAAGGGGCTGGAAAGGCAAAAG
i macFas5.chr6             C 0 T 54
s calJac3.chr2             203851864 52 + 204313951 GGTGGCCCGTGCTCCGTGAGAACCACCAGAAAAGGGGCTGGAAAGATAAAAG
i calJac3.chr2             T 73 C 0
s saiBol1.JH378155          16012201 52 +  16417988 GGTGGCCCGTGCTCCGTGAGAACCACCAGAAAAGGGGCTGGAAAGATAAAGG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e rheMac8.chr6             179524484  0 - 180051392 C

a score=4011.000000
s hg38.chr5_KI270793v1_alt     67845 2 +    126136 CA
s panTro5.chr5             181331348 2 - 181907262 CA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051773 2 - 183735486 CA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140483 2 +    698298 CA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569787 2 - 121039945 CA
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203851916 2 + 204313951 CA
i calJac3.chr2             C 0 T 54
s saiBol1.JH378155          16012253 2 +  16417988 CA
i saiBol1.JH378155         C 0 T 55
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 54 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=2000.000000
s hg38.chr5_KI270793v1_alt     67847 2 +    126136 CC
s panTro5.chr5             181331350 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051775 2 - 183735486 CC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140485 2 +    698298 CC
i gorGor5.CYUI01015805v1   C 0 T 72
s nomLeu3.chr6             120569789 2 - 121039945 CC
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 55 +  16417988 T
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 54 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=546.000000
s hg38.chr5_KI270793v1_alt     67849 1 +    126136 T
s panTro5.chr5             181331352 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051777 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120569791 1 - 121039945 T
i nomLeu3.chr6             C 0 T 57
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 55 +  16417988 T
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 54 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C
e gorGor5.CYUI01015805v1      140487 72 +    698298 T

a score=7002.000000
s hg38.chr5_KI270793v1_alt     67850 14 +    126136 GCTCAGCG-CCCCGG
s panTro5.chr5             181331353 14 - 181907262 GCTCAGCG-CCCCGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051778 15 - 183735486 GCTCAGCGCCCCCGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140415 14 +    698298 GCTCAGCG-CCCCGG
i gorGor5.CYUI01015805v1   T 72 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 55 +  16417988 T
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e macFas5.chr6             181258195 54 - 181584905 T
e rheMac8.chr6             179524484  0 - 180051392 C

a score=1000.000000
s hg38.chr5_KI270793v1_alt     67864 1 +    126136 G
s panTro5.chr5             181331367 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051793 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140429 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181258141 1 - 181584905 G
i macFas5.chr6             T 54 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 55 +  16417988 T
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C

a score=845.000000
s hg38.chr5_KI270793v1_alt     67865 1 +    126136 C
s panTro5.chr5             181331368 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051794 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140430 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181258142 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s saiBol1.JH378155          16012200 1 +  16417988 C
i saiBol1.JH378155         T 55 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C

a score=55454.000000
s hg38.chr5_KI270793v1_alt     67866 25 +    126136 GGCGGCCCATCCTCCGTGAGGACCA
s panTro5.chr5             181331369 25 - 181907262 GGCGGCCCATCCTCCCTGAGGACCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051795 25 - 183735486 GGCGGCCCATCCTCCGTGAGGACCA
i panPan2.chr5             C 0 T 74
s gorGor5.CYUI01015805v1      140431 25 +    698298 GGCGGCCCATCCTCCGTGAGGACCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569735 25 - 121039945 GGCAGCCCATCCTCCATGAGGACCA
i nomLeu3.chr6             T 57 C 0
s macFas5.chr6             181258143 25 - 181584905 GGTGGCCCATCCTCCATGAGAACCA
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203851864 25 + 204313951 GGTGGCCCGTGCTCCGTGAGAACCA
i calJac3.chr2             T 54 C 0
s saiBol1.JH378155          16012201 25 +  16417988 GGTGGCCCGTGCTCCGTGAGAACCA
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e rheMac8.chr6             179524484  0 - 180051392 C

a score=2800.000000
s hg38.chr5_KI270793v1_alt     67891 1 +    126136 C
s panTro5.chr5             181331394 1 - 181907262 C
i panTro5.chr5             C 0 T 73
s panPan2.chr5             183051746 1 - 183735486 C
i panPan2.chr5             T 74 C 0
s gorGor5.CYUI01015805v1      140456 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569760 1 - 121039945 C
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258168 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203851889 1 + 204313951 C
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012226 1 +  16417988 C
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C

a score=60181.000000
s hg38.chr5_KI270793v1_alt     67892 28 +    126136 CAGAAAAGGGGCTGGAAAGGCAAAAGCA
s panTro5.chr5             181331322 28 - 181907262 AGGTAAAGGGGCTGGAAAGGCAAAAGCA
i panTro5.chr5             T 73 C 0
s panPan2.chr5             183051747 28 - 183735486 AGGAAAAGGTGCTGGAAAGGCAAAAGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140457 28 +    698298 CAGAAAAGGGGCTGGAAAGGCAAAAGCA
i gorGor5.CYUI01015805v1   C 0 T 69
s nomLeu3.chr6             120569761 28 - 121039945 CAGAAAAGGGGCTGGAAAGGCAAAAGCA
i nomLeu3.chr6             C 0 T 54
s macFas5.chr6             181258169 27 - 181584905 CAGAAAAGGGGCTGGAAAGGCAAAAGC-
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203851890 28 + 204313951 CAGAAAAGGGGCTGGAAAGATAAAAGCA
i calJac3.chr2             C 0 T 54
s saiBol1.JH378155          16012227 28 +  16417988 CAGAAAAGGGGCTGGAAAGATAAAGGCA
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e rheMac8.chr6             179524484  0 - 180051392 C

a score=1146.000000
s hg38.chr5_KI270793v1_alt     67920 4 +    126136 GTGG
s panTro5.chr5             181331350 4 - 181907262 CCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051775 4 - 183735486 CCTG
i panPan2.chr5             C 0 C 0
s macFas5.chr6             181258196 3 - 181584905 -CTG
i macFas5.chr6             C 0 C 0
s saiBol1.JH378155          16012255 4 +  16417988 GCTG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569789 54 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C
e gorGor5.CYUI01015805v1      140485 69 +    698298 T

a score=4365.000000
s hg38.chr5_KI270793v1_alt     67924 3 +    126136 CTC
s panTro5.chr5             181331354 3 - 181907262 CTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051779 3 - 183735486 CTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140416 3 +    698298 CTC
i gorGor5.CYUI01015805v1   T 69 C 0
s macFas5.chr6             181258199 3 - 181584905 CTC
i macFas5.chr6             C 0 C 0
s saiBol1.JH378155          16012259 3 +  16417988 CTC
i saiBol1.JH378155         C 0 T 61
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569789 54 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C

a score=6386.000000
s hg38.chr5_KI270793v1_alt     67927 7 +    126136 AGCGCCC
s panTro5.chr5             181331357 7 - 181907262 AGCGCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051782 7 - 183735486 AGCGCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140419 7 +    698298 AGCGCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181258202 7 - 181584905 AGCGTCC
i macFas5.chr6             C 0 T 66
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012262 61 +  16417988 T
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569789 54 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C

a score=1065.000000
s hg38.chr5_KI270793v1_alt     67934 5 +    126136 CAGGA
s panTro5.chr5             181331364 5 - 181907262 CGGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051789 5 - 183735486 CCGGG
i panPan2.chr5             C 0 T 146
s gorGor5.CYUI01015805v1      140426 5 +    698298 CGGGC
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012262 61 +  16417988 T
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569789 54 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258209 66 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=13227.000000
s hg38.chr5_KI270793v1_alt     67939 6 +    126136 GGCGGC
s panTro5.chr5             181331369 6 - 181907262 GGCGGC
i panTro5.chr5             C 0 T 146
s panPan2.chr5             183051648 6 - 183735486 GGCAGC
i panPan2.chr5             T 146 C 0
s gorGor5.CYUI01015805v1      140431 6 +    698298 GGCGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569735 6 - 121039945 GGCAGC
i nomLeu3.chr6             T 54 C 0
s macFas5.chr6             181258143 6 - 181584905 GGTGGC
i macFas5.chr6             T 66 C 0
s calJac3.chr2             203851864 6 + 204313951 GGTGGC
i calJac3.chr2             T 54 C 0
s saiBol1.JH378155          16012201 6 +  16417988 GGTGGC
i saiBol1.JH378155         T 61 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C

a score=108379.000000
s hg38.chr5_KI270793v1_alt     67945 46 +    126136 CCATCCTCCGTGAGGACCATCAGAAAAGGGGCTGGAAAGGCAAAAG
s panTro5.chr5             181331229 46 - 181907262 CCATCCTCCATGAGGACCGCCGGAAAAGGGGCTGGAAAGGCAAAAG
i panTro5.chr5             T 146 C 0
s panPan2.chr5             183051654 46 - 183735486 CCATCCTCCGTGAGGACCACCGGAAAAGGGGCTGGAAAGGCAAAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140437 46 +    698298 CCATCCTCCGTGAGGACCACCAGAAAAGGGGCTGGAAAGGCAAAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569741 46 - 121039945 CCATCCTCCATGAGGACCACCAGAAAAGGGGCTGGAAAGGCAAAAG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258149 46 - 181584905 CCATCCTCCATGAGAACCACCAGAAAAGGGGCTGGAAAGGCAAAAG
i macFas5.chr6             C 0 T 52
s calJac3.chr2             203851870 46 + 204313951 CCGTGCTCCGTGAGAACCACCAGAAAAGGGGCTGGAAAGATAAAAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012207 46 +  16417988 CCGTGCTCCGTGAGAACCACCAGAAAAGGGGCTGGAAAGATAAAGG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e rheMac8.chr6             179524484  0 - 180051392 C

a score=4011.000000
s hg38.chr5_KI270793v1_alt     67991 2 +    126136 CA
s panTro5.chr5             181331275 2 - 181907262 CA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051700 2 - 183735486 CA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140483 2 +    698298 CA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569787 2 - 121039945 CA
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203851916 2 + 204313951 CA
i calJac3.chr2             C 0 T 63
s saiBol1.JH378155          16012253 2 +  16417988 CA
i saiBol1.JH378155         C 0 T 54
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=2000.000000
s hg38.chr5_KI270793v1_alt     67993 2 +    126136 CC
s panTro5.chr5             181331277 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051702 2 - 183735486 CC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140485 2 +    698298 CC
i gorGor5.CYUI01015805v1   C 0 T 72
s nomLeu3.chr6             120569789 2 - 121039945 CC
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e calJac3.chr2             203851918 63 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=546.000000
s hg38.chr5_KI270793v1_alt     67995 1 +    126136 T
s panTro5.chr5             181331279 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051704 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120569791 1 - 121039945 T
i nomLeu3.chr6             C 0 T 57
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e calJac3.chr2             203851918 63 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C
e gorGor5.CYUI01015805v1      140487 72 +    698298 T

a score=1071.000000
s hg38.chr5_KI270793v1_alt     67996 3 +    126136 CCT
s panTro5.chr5             181331280 3 - 181907262 GCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051705 3 - 183735486 GCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140415 3 +    698298 GCT
i gorGor5.CYUI01015805v1   T 72 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e calJac3.chr2             203851918 63 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=5767.000000
s hg38.chr5_KI270793v1_alt     67999 13 +    126136 CAGCGCCCCAGGA
s panTro5.chr5             181331283 13 - 181907262 CAGCGCCCCGGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051708 13 - 183735486 CAGTGCCCCGGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140418 13 +    698298 CAGCGCCCCGGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203851855  9 + 204313951 CAACGCCAT----
i calJac3.chr2             T 63 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484  0 - 180051392 C

a score=117962.000000
s hg38.chr5_KI270793v1_alt     68012 52 +    126136 GGCGGCCCATCCTCCGTGAGGACCATCAGAAAAGGGGCTGGAAAGGCAAAAG
s panTro5.chr5             181331296 52 - 181907262 GGCGGCCCATCCTCCGTGAGGACCACAGGTAAAGGGGCTGGAAAGGCAAAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051721 52 - 183735486 GGCGGCCCATCCTCCGTGAGGACCACAGGAAAAGGTGCTGGAAAGGCAAAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140431 52 +    698298 GGCGGCCCATCCTCCGTGAGGACCACCAGAAAAGGGGCTGGAAAGGCAAAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569735 52 - 121039945 GGCAGCCCATCCTCCATGAGGACCACCAGAAAAGGGGCTGGAAAGGCAAAAG
i nomLeu3.chr6             T 57 C 0
s macFas5.chr6             181258143 52 - 181584905 GGTGGCCCATCCTCCATGAGAACCACCAGAAAAGGGGCTGGAAAGGCAAAAG
i macFas5.chr6             T 52 T 52
s calJac3.chr2             203851864 52 + 204313951 GGTGGCCCGTGCTCCGTGAGAACCACCAGAAAAGGGGCTGGAAAGATAAAAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012201 52 +  16417988 GGTGGCCCGTGCTCCGTGAGAACCACCAGAAAAGGGGCTGGAAAGATAAAGG
i saiBol1.JH378155         T 54 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e rheMac8.chr6             179524484  0 - 180051392 C

a score=4011.000000
s hg38.chr5_KI270793v1_alt     68064 2 +    126136 CA
s panTro5.chr5             181331348 2 - 181907262 CA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051773 2 - 183735486 CA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140483 2 +    698298 CA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569787 2 - 121039945 CA
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203851916 2 + 204313951 CA
i calJac3.chr2             C 0 I 9
s saiBol1.JH378155          16012253 2 +  16417988 CA
i saiBol1.JH378155         C 0 T 54
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=3000.000000
s hg38.chr5_KI270793v1_alt     68066 2 +    126136 CC
s panTro5.chr5             181331350 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051775 2 - 183735486 CC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140485 2 +    698298 CC
i gorGor5.CYUI01015805v1   C 0 T 72
s nomLeu3.chr6             120569789 2 - 121039945 CC
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203851927 2 + 204313951 CC
i calJac3.chr2             I 9 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=910.000000
s hg38.chr5_KI270793v1_alt     68068 1 +    126136 T
s panTro5.chr5             181331352 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051777 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120569791 1 - 121039945 T
i nomLeu3.chr6             C 0 T 57
s calJac3.chr2             203851929 1 + 204313951 T
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C
e gorGor5.CYUI01015805v1      140487 72 +    698298 T

a score=12576.000000
s hg38.chr5_KI270793v1_alt     68069 15 +    126136 GCTCAGCG-CCCCGGG
s panTro5.chr5             181331353 15 - 181907262 GCTCAGCG-CCCCGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051778 16 - 183735486 GCTCAGCGCCCCCGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140415 15 +    698298 GCTCAGCG-CCCCGGG
i gorGor5.CYUI01015805v1   T 72 C 0
s calJac3.chr2             203851930 15 + 204313951 GCTCAGCG-TCCCGGG
i calJac3.chr2             C 0 T 81
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484  0 - 180051392 C

a score=-313.000000
s hg38.chr5_KI270793v1_alt     68084 1 +    126136 A
s panTro5.chr5             181331368 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051794 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140430 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e calJac3.chr2             203851945 81 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 57 - 121039945 T
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=55454.000000
s hg38.chr5_KI270793v1_alt     68085 25 +    126136 GGCGGCCCATCCTCCGTGAGGACCA
s panTro5.chr5             181331369 25 - 181907262 GGCGGCCCATCCTCCCTGAGGACCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051795 25 - 183735486 GGCGGCCCATCCTCCGTGAGGACCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140431 25 +    698298 GGCGGCCCATCCTCCGTGAGGACCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569735 25 - 121039945 GGCAGCCCATCCTCCATGAGGACCA
i nomLeu3.chr6             T 57 C 0
s macFas5.chr6             181258143 25 - 181584905 GGTGGCCCATCCTCCATGAGAACCA
i macFas5.chr6             T 52 C 0
s calJac3.chr2             203851864 25 + 204313951 GGTGGCCCGTGCTCCGTGAGAACCA
i calJac3.chr2             T 81 C 0
s saiBol1.JH378155          16012201 25 +  16417988 GGTGGCCCGTGCTCCGTGAGAACCA
i saiBol1.JH378155         T 54 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e rheMac8.chr6             179524484  0 - 180051392 C

a score=1314.000000
s hg38.chr5_KI270793v1_alt     68110 1 +    126136 T
s panTro5.chr5             181331394 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140456 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569760 1 - 121039945 C
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258168 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203851889 1 + 204313951 C
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012226 1 +  16417988 C
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C
e panPan2.chr5             183051820 0 - 183735486 C

a score=55000.000000
s hg38.chr5_KI270793v1_alt     68111 26 +    126136 CAGAAAAGGGGCTGGAAAGGCAAAAG
s panTro5.chr5             181331395 26 - 181907262 CGGAAAAGGGGCTGGAAAGGCAAAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051820 24 - 183735486 CAGGTAAAGGGCTGGAAGG--CAAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140457 26 +    698298 CAGAAAAGGGGCTGGAAAGGCAAAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569761 26 - 121039945 CAGAAAAGGGGCTGGAAAGGCAAAAG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258169 26 - 181584905 CAGAAAAGGGGCTGGAAAGGCAAAAG
i macFas5.chr6             C 0 T 52
s calJac3.chr2             203851890 26 + 204313951 CAGAAAAGGGGCTGGAAAGATAAAAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012227 26 +  16417988 CAGAAAAGGGGCTGGAAAGATAAAGG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e rheMac8.chr6             179524484  0 - 180051392 C

a score=4011.000000
s hg38.chr5_KI270793v1_alt     68137 2 +    126136 CA
s panTro5.chr5             181331421 2 - 181907262 CA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051844 2 - 183735486 CA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140483 2 +    698298 CA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569787 2 - 121039945 CA
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203851916 2 + 204313951 CA
i calJac3.chr2             C 0 T 54
s saiBol1.JH378155          16012253 2 +  16417988 CA
i saiBol1.JH378155         C 0 T 54
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=2000.000000
s hg38.chr5_KI270793v1_alt     68139 2 +    126136 CC
s panTro5.chr5             181331423 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051846 2 - 183735486 CC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140485 2 +    698298 CC
i gorGor5.CYUI01015805v1   C 0 T 72
s nomLeu3.chr6             120569789 2 - 121039945 CC
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=273.000000
s hg38.chr5_KI270793v1_alt     68141 1 +    126136 T
s panPan2.chr5             183051848 1 - 183735486 T
i panPan2.chr5             C 0 I 2
s nomLeu3.chr6             120569791 1 - 121039945 T
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181331425 0 - 181907262 C
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C
e gorGor5.CYUI01015805v1      140487 72 +    698298 T

a score=6783.000000
s hg38.chr5_KI270793v1_alt     68142 15 +    126136 GCTCAGCGCCCCGGG
s panTro5.chr5             181331425 15 - 181907262 GCTCAGCGCCCCGGG
i panTro5.chr5             C 0 T 45
s panPan2.chr5             183051851 15 - 183735486 GTCCAGCCGCCCGGG
i panPan2.chr5             I 2 C 0
s gorGor5.CYUI01015805v1      140415 15 +    698298 GCTCAGCGCCCCGGG
i gorGor5.CYUI01015805v1   T 72 C 0
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792  0 - 121039945 C
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484  0 - 180051392 C

a score=-128.000000
s hg38.chr5_KI270793v1_alt     68157 1 +    126136 A
s panPan2.chr5             183051866 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140430 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
e panTro5.chr5             181331440 45 - 181907262 T
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 54 +  16417988 T
e calJac3.chr2             203851918 54 + 204313951 T
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 0 - 121039945 C
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258195 52 - 181584905 T
e rheMac8.chr6             179524484 0 - 180051392 C

a score=24303.000000
s hg38.chr5_KI270793v1_alt     68158 22 +    126136 GGCGGCCCATCCTCCGTGAGGA
s panPan2.chr5             183051867 22 - 183735486 GTCGGCCCATCCTCCCTGAGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140431 22 +    698298 GGCGGCCCATCCTCCGTGAGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181258143 22 - 181584905 GGTGGCCCATCCTCCATGAGAA
i macFas5.chr6             T 52 C 0
s calJac3.chr2             203851864 22 + 204313951 GGTGGCCCGTGCTCCGTGAGAA
i calJac3.chr2             T 54 C 0
s saiBol1.JH378155          16012201 22 +  16417988 GGTGGCCCGTGCTCCGTGAGAA
i saiBol1.JH378155         T 54 C 0
e panTro5.chr5             181331440 45 - 181907262 T
e aotNan1.NW_018503740v1    25426073 914 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792  0 - 121039945 C
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e rheMac8.chr6             179524484  0 - 180051392 C

a score=6693.000000
s hg38.chr5_KI270793v1_alt     68180 4 +    126136 CCAT
s panPan2.chr5             183051889 4 - 183735486 CCGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140453 4 +    698298 CCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181258165 4 - 181584905 CCAC
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203851886 4 + 204313951 CCAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012223 4 +  16417988 CCAC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25426987 4 -  25620257 CCAC
i aotNan1.NW_018503740v1   I 914 C 0
e panTro5.chr5             181331440 45 - 181907262 T
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 0 - 121039945 C
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e rheMac8.chr6             179524484 0 - 180051392 C

a score=66031.000000
s hg38.chr5_KI270793v1_alt     68184 27 +    126136 CAGAAAAGGGGCTGGAAAGGCAAAAGC
s panTro5.chr5             181331395 27 - 181907262 CGGAAAAGGGGCTGGAAAGGCAAAAGC
i panTro5.chr5             T 45 C 0
s panPan2.chr5             183051893 27 - 183735486 CGGAAAAGGGGCTGGAAAGGCAAAAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140457 27 +    698298 CAGAAAAGGGGCTGGAAAGGCAAAAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181258169 27 - 181584905 CAGAAAAGGGGCTGGAAAGGCAAAAGC
i macFas5.chr6             C 0 I 9
s calJac3.chr2             203851890 27 + 204313951 CAGAAAAGGGGCTGGAAAGATAAAAGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012227 27 +  16417988 CAGAAAAGGGGCTGGAAAGATAAAGGC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25426991 27 -  25620257 CAGAAAAGGGGCTGGAAAGATAAAAGC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792  0 - 121039945 C
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240  0 -  91010382 C
e cerAty1.NW_012009470v1      270032  0 -  16742782 C
e colAng1.NW_012118799v1      196822  0 -    514179 C
e macNem1.NW_012012389v1      259394  0 -   1764207 C
e rheMac8.chr6             179524484  0 - 180051392 C

a score=1911.000000
s hg38.chr5_KI270793v1_alt     68211 1 +    126136 A
s panTro5.chr5             181331422 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051920 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140484 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203851917 1 + 204313951 A
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012254 1 +  16417988 A
i saiBol1.JH378155         C 0 I 56
s aotNan1.NW_018503740v1    25427018 1 -  25620257 A
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 0 - 121039945 C
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258196 9 - 181584905 I
e rheMac8.chr6             179524484 0 - 180051392 C

a score=3000.000000
s hg38.chr5_KI270793v1_alt     68212 2 +    126136 CC
s panTro5.chr5             181331423 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051921 2 - 183735486 CC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140485 2 +    698298 CC
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203851918 2 + 204313951 CC
i calJac3.chr2             C 0 I 17
s aotNan1.NW_018503740v1    25427019 2 -  25620257 CC
i aotNan1.NW_018503740v1   C 0 I 10
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 56 +  16417988 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 0 - 121039945 C
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258196 9 - 181584905 I
e rheMac8.chr6             179524484 0 - 180051392 C

a score=1000.000000
s hg38.chr5_KI270793v1_alt     68214 1 +    126136 G
s panTro5.chr5             181331425 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051923 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140487 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s aotNan1.NW_018503740v1    25427031 1 -  25620257 G
i aotNan1.NW_018503740v1   I 10 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 56 +  16417988 I
e calJac3.chr2             203851920 17 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e nomLeu3.chr6             120569792 0 - 121039945 C
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258196 9 - 181584905 I
e rheMac8.chr6             179524484 0 - 180051392 C

a score=7230.000000
s hg38.chr5_KI270793v1_alt     68215 5 +    126136 CTCAG
s panTro5.chr5             181331426 5 - 181907262 CTCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051924 5 - 183735486 CTCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140488 5 +    698298 CTCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569792 5 - 121039945 CTCAG
i nomLeu3.chr6             C 0 C 0
s aotNan1.NW_018503740v1    25427032 5 -  25620257 CTCAG
i aotNan1.NW_018503740v1   C 0 I 1
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 56 +  16417988 I
e calJac3.chr2             203851920 17 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258196 9 - 181584905 I
e rheMac8.chr6             179524484 0 - 180051392 C

a score=-448.000000
s hg38.chr5_KI270793v1_alt     68220 1 +    126136 G
s panTro5.chr5             181331431 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051929 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140493 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569797 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25427037 1 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e saiBol1.JH378155          16012255 56 +  16417988 I
e calJac3.chr2             203851920 17 + 204313951 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M
e chlSab2.chr4              90573240 0 -  91010382 C
e cerAty1.NW_012009470v1      270032 0 -  16742782 C
e colAng1.NW_012118799v1      196822 0 -    514179 C
e macNem1.NW_012012389v1      259394 0 -   1764207 C
e macFas5.chr6             181258196 9 - 181584905 I
e rheMac8.chr6             179524484 0 - 180051392 C

a score=1907.000000
s hg38.chr5_KI270793v1_alt     68221 2 +    126136 GC
s panTro5.chr5             181331432 2 - 181907262 GC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051930 2 - 183735486 GC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140494 1 +    698298 G-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569798 2 - 121039945 GC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179524484 2 - 180051392 GT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258205 2 - 181584905 GT
i macFas5.chr6             I 9 C 0
s macNem1.NW_012012389v1      259394 2 -   1764207 GT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270032 2 -  16742782 GT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573240 2 -  91010382 GT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      196822 2 -    514179 AT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203851937 2 + 204313951 GT
i calJac3.chr2             I 17 C 0
s saiBol1.JH378155          16012311 2 +  16417988 TT
i saiBol1.JH378155         I 56 C 0
s aotNan1.NW_018503740v1    25427038 2 -  25620257 GT
i aotNan1.NW_018503740v1   I 1 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       95571 54 +    298490 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=565456.000000
s hg38.chr5_KI270793v1_alt     68223 69 +    126136 CCCAGGCGCTGGAGAAAACAGACTAGAGGTGAAGCTGCTTCCAGGCTGCCCAACACTCAGCACCTCTGA
s panTro5.chr5             181331434 69 - 181907262 CCCGGGCGCTGGAGAAAACAGACTAGAGGTGAAGCTGCTTCCAGGCTGCTCAACACTCAGCACCTCCGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183051932 69 - 183735486 CCCGGGCGCTGGAGAAAACAGACTAGAGGTGAAGCTGCTTCCAGGCTGCTCAACACTCAGCACCTCCGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140495 69 +    698298 CCCGGGCGCTGGAGAAAACAGACTAGAGGTGAAGCTGCGTCCAGGCTGCCCAACACTCAGCACCTCCGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569800 69 - 121039945 CCTGGGCGCTGGAGAAAACAGACTAGAGGTGAAGCTGCATCCAGGCTGCCCAACACTCAGCAGCTCCGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179524486 69 - 180051392 CCAGGGCGCTGGAGGAAACAGACTAGAGGTGAAGCCGCGTCCAGGCTGCCAAACACTCAGCACCTCTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258207 69 - 181584905 CCAGGGCGCTGGAGGAAACAGACTAGAGGTGAAGCCGCGTCCAGGCTGCCAAACACTCAGCACCTCTGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259396 69 -   1764207 CCAGGGCGCTGGAGGAAACAGACTAGAGGTGAAGCTGCGTCCAGGCTGCCAAACACTCAGCACCTCTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270034 69 -  16742782 CCAGGGCGCTGGAGGAAACAGACTCGAGGCGAAGCCGCGTCCAGGCTGCCAAACACTCAGCACCTCCGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573242 69 -  91010382 CCAGGGCGCTGGAGGAAACAGACTAGAGGTGAAGCCGCGTCCAGGCTGCCGAACACTCAGCACCTCCGT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      196824 69 -    514179 CCCAGGCACTGGAGGAAACAGACTAGAGGTGAAGCCGCGTCCAGGCTGCCGAACACTCAGCACCTCCGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203851939 69 + 204313951 CCCGGGCGCTGGAGGAAACGGACTAGAGGTGAAGCCGCGTCTGGGCCGCCAAACACTCAGCACCTCCAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012313 68 +  16417988 CCCGTGCGCTGGAGGAAACGGACTAGACGTGAAGCCGC-TCCAGGCTGCCAAACACTCAGCACCTCCAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       95625 69 +    298490 CCCGGGTGCTGGAGGAAACACACTAGAGGTGAAGCCGCGTCCGGTCTGCCAAACACTCAGCACCTCCAT
i cebCap1.NW_016108158v1   I 54 C 0
s aotNan1.NW_018503740v1    25427040 68 -  25620257 CCCGGGCGCTGG-GGAGACAGCCTAGCGGTGAAGCGGCGTCCGGGCTGCCAAACACTCGGCACCTCCGT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e manLeu1.NW_012110441v1      164875 2680 -    438239 M

a score=1999910.000000
s hg38.chr5_KI270793v1_alt     68292 211 +    126136 GGGCCTTTGAGTCCTTGGTCCC--TGACTCACACCCTTAAAGTGGCAGGAGGACCAGAGAGGCCTGCCCTCTCTGGGACCCAGGCCGCAGGGATCGCCTCCATCCTACCCAGACCGGGCCTCATGGCTCagtgtgccccggggtccagcagcaacggtgtcccaggagctgtgggaagtgcagagtctcaggcccacctggccctgctgggac
s panTro5.chr5             181331503 207 - 181907262 GGGCCTTTGAGTCCTTGGTCTC--TGACTCACAC----AAAGTGGCAGGAGGACCAGAGAGGCCTGCCCTCTCTGGGACCCAGGCCACAGGGATCGCCTCCATCCTACCCAGACCGGGCCTCATGGCTCagtgtgccctggggtccagcagcaacagtgtcccaggagctctgggaagtgcagagtctcaggcctacctggccctgctgggac
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052001 207 - 183735486 GGGCCTTTGAGTCCTTGGTCCC--TGACTCACAC----AAAGTGGCAGGAGGACCAGAGAGGCCTGCCCTCTCTGGGACCCAGGCCACAGGGATCGCCTCCATCCTACCCAGACCGGGCCTCATGGCTCagtgtgccctggggtccagcagcaacagtgtcccaggagctgtgggaagtgcagagtctcaggcctacctggccctgctgggac
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140564 211 +    698298 GGGCCTTTGAGTCCTTGGTCCC--TGACTTACACCCTTAAAGTGGCAGGAGGGCCAGAGAGGCCTGCCCTCTCTGGGACCCAGGCCACGGGGATCGCCTCCATCCTACCCAGACCGGGCCTCATGGCTCagtgtgccccagggtccagcagcaacggtgtcccaggagctgtgggaagtgcagagtctcaggcccacctggccctgctgggac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120569869 211 - 121039945 GGGCCTTTGAGTCCTTGGTCCC--TGACTCACACCCTGAAAGTGGCAGGAGGACCAGAGAGGCCTGCCCTCTCCGGGACCCAGGCCATGGGGGTCACCTCTATCCTGCCCAGACTGGGCCTCGTGGCTCagtgttccctgtggtccagcagcaacggtgtcccaggagctgtgggaagtgcagagtctcaggcccacctggccctgctgggac
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179524555 211 - 180051392 GGGCCTTTGAGTCCTTGGTCCC--TGACTCACACCCTGAAAGTGGCAGGAGAACCAGAAAGGTCTGCACTCTCCAGGACCCAGGCCACAGGGTTTGCCACCATCCTGCCCAGACCAGGccttgtgactcagtgtgccccacggtccagcagcaacggtgtcccaggagctgcgggaagtgcagagtcccaggcccacctggccctgctgggat
i rheMac8.chr6             C 0 I 38
s macFas5.chr6             181258276 211 - 181584905 GGGCCTTTGAGTCCTTGGTCCC--TGACTCACACCCTGAAAGTGGCAGGAGAACCAGAAAGGTCTGCACTCTCCAGGACCCAGGCCACAGGGTTTGCCACCATCCTGCCCAGACCAGGccttgtgactcagtgtgccccacggtccagcagcaacggtgtcccaggagctgcgggaagtgcagagtcccaggcccacctggccctgctgggat
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259465 211 -   1764207 GGGCCTTTGAGTCCTTGGTCCC--TGACTCACACCCTGAAAGTGGCAGGAGAACCAGAAAGGTCTGCACTCTCCAGGACCCAGGCCACAGGGTTCGCCACCATCCTGCCCAGACCAGGccttgtgactcagtgtgccccacggtccagcagcaacggtgtcccaggagctgcgggaagtgcagagtcccaggcccacctggccctgctgggac
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270103 213 -  16742782 GGGCCTTTGAGTCCCTGGTCCCTGTGACTCACACCCTGAAAGTGGCAGGAGGACCAGAAAGGTCTGCCCCCTCCGGGACCCAGGCCGCAGGGTTCGCCGCCATCCTGCCCAGACCAGGccttgtggctcattgtgccccatggtccagcagcaacggtgtcccaggagctgcgggaagtgcagagtcccaggcccacctggccctgctgggac
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573311 208 -  91010382 GGGCCTTTGAGTCCTTGGTCCC--TGACTCACACCCTGAAAGTGGC---AGGACCAGAAAGGTCTGCCCTCTCCGGGACCCAGGCCGCAGGGGTCGCCACCATCCTGCCCAGACCAGGccttgtggctcagtgtgccccacggtccagcagcaacggtgtcccaggagctgcgggaagtgcagagtcccaggcccacctggccctgctgggac
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      167557 211 -    438239 GGGCCTTTGAGTCCTTGGTCCC--TGACTCACACCCTGAAAGTGGCAGGAGGACCAGAAAGGTCTGCCCTCTCCGGGACCCAGGCCACAGGGTTCGCCGCCATCCTGCCCAGACCAGGctttgtggctcagtgtgccccacggtccagcagcaacggtgtcccaggagctgcgggaagtgcagagtcccaggcctacctggccctgctgggac
i manLeu1.NW_012110441v1   M 2680 C 0
s colAng1.NW_012118799v1      196893 211 -    514179 GGGCCTTTGAGTCCTTGGTCCC--TGACTCACACCCTGAAAGTGGCAGGAGGACCAGAAAGGTCTGCCCTCTCCAGGACCCAGGCTGCAGGGGTCGCCACCATCCTGCCCAGACCAGGccttgtggctcagtgtgccccatggtccagcagcaacagtgtcccaggagctgcgggaagtgcagagtcccaggcccacctggccctgctgggac
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852008 210 + 204313951 GGGCCTTTGAGTCCTCAGTCCC--TGACTCACACCCTGAAAGCGGCAGGAGGGCCAGAGAGGCCTGCCTTCCCTGGGACCCAGGCTGCT-GGTTCACCTCCATCCTGCCCAGACCAGGccttgcagcccagtgtggtccacggtccagcagcaagggtgtcccaggagccacaggaagtgcacagtcctgagcccacctggccctgctgggac
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012381 210 +  16417988 GGGCCTTTGAGTCCTCGGTCCC--TGACTCACACCCTGAAAGCGGCGGGAGGGCCAGGGAGACCTGCCTTCCCTGGGACTCAGGCTGCC-GGTTCGCCTCCATCCTGCCCAGACCAGGCCTCGCAGCCCagtgtgacccgtggtccagcagcaagggtgtcccaggagccacaggaagtacacagtcctgggcccacctggccctgctgggac
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       95694 208 +    298490 GGGCCTTTGAGTCCTCGGTCCC--TGACT--CACCCTGAAAGCGGCGGGAGGGCCAGAGAGGCCTGCCTTCCCTGGGACCCAGGCTGCC-AGTTCGCCTCCATCCTGCCCAGACCAGGCCTCGCAGCCCagtgtgacccgcggtccagcagcaagggtgtcccaagagcctcgggaagtgcacagtcctgggcccacctggccctgctgggac
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25427108 210 -  25620257 GGGCCGTTGAGTCCTCGGTCCG--CGACTCACACCCTGAAAGCAGCGGGAGGGCCAGAGAGGCCTGCCTTCCCTGGGACCCGGGCTGCC-GGTTCGCCTCCATCCTGCCCAGACCAGGCCTCGCAGCCCagtgtgacccgcggtccagcagcaagggtgtcccgggagccacgggaagtgcactgtcccagacccacctggccctgctgggac
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=5241.000000
s hg38.chr5_KI270793v1_alt     68503  7 +    126136 ggagac--------------------------------t
s panTro5.chr5             181331710  7 - 181907262 ggagac--------------------------------t
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052208  7 - 183735486 ggagac--------------------------------t
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140775  7 +    698298 ggagac--------------------------------t
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570080  7 - 121039945 agagac--------------------------------t
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258487 37 - 181584905 --ttaatatttaaataagatTAAATAAATATTTAAATTT
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      259676  5 -   1764207 --agaa--------------------------------t
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      270316  5 -  16742782 --agaa--------------------------------t
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90573519  5 -  91010382 --cgaa--------------------------------t
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      167768  5 -    438239 --agaa--------------------------------t
i manLeu1.NW_012110441v1   C 0 I 1
s colAng1.NW_012118799v1      197104  5 -    514179 --agaa--------------------------------t
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203852218  7 + 204313951 agaaac--------------------------------t
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012591  7 +  16417988 agaaac--------------------------------t
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       95902  7 +    298490 agaaac--------------------------------t
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25427318  7 -  25620257 aaaaac--------------------------------t
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I
e rheMac8.chr6             179524766 38 - 180051392 I

a score=1893819.000000
s hg38.chr5_KI270793v1_alt     68510 198 +    126136 gcatttaaacaagatccctgggGTTCAAGGCATACCGTGTTTGATTATCACTGGATTTAGGGGTCTGCCCAGCCCA-TTCCCTGCCAGATGGAGAGGAAATTCTTTTCCAAGGAAGGTAAAATCACCCAGACCTCTCAAACCAACCCCCATTTACTACAGAAAGGGCCCTTGGGACTCCTGCACTTAGCATTGTGAGTG
s panTro5.chr5             181331717 198 - 181907262 gcatttaaacaagatccctgggGTTCAAGGCATACCGTGTTTGATTATCACTGGATTTAGGGGTCTGCCCAGCCCA-TTCCCTGCCAGATGGAGAGGAAATTCTTTTCCAAGGAAGGCAAAATCACCCAGACCTCTCAAACCAACCCCCATTTACTACAGAAAGGGCCCTTGGGACTCCTGCACTTAGCATtgtgggtg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052215 198 - 183735486 gcatttaaacaagatccctgggGTTCAAGGCATACCGTGTTTGATTATCACTGGATTTAGGGGTCTGCCCAGCCCA-TTCCCTGCCAGATGGAGAGGAAATTCTTTTCCAAGGAAGGCAAAATCACCCAGACCTCTCAAACCAACCCCCATTTACTACAGAAAGGGCCCTTGGGACTCCTGCACTTAGCATTGTGGGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140782 198 +    698298 gcatttaaacaacatccctgggGTTCAAGGCATACCGTGTTTGATTATCACTGGATTTAGGGGTCTGACCAGCCCA-TTCCCTGCCAGACGGAGAGGAAATTTTTTTCCAAGGAAGGTAAAATCACCCAGACCTCTCAAACCAACCCCCATTTACTACAGAAAGGGCCCTCAGGACTCCTGCACTTAGCATTGTGGGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570087 198 - 121039945 gcatttaaacaagatccttaggGTTCAGGGCATACCGTGTTTGATTATCACTGGATTTAGGGGTCTGCCCAGCCCA-TTCCCTGCCAGACGGAGAGGAAATTCTTTCCCAAGGAAGGTAAAATCACACAGACCTCTCAAACCAACCCCTATTTACTACAGAAAGGGCCCTCAGGACTCCTGCGCTTAGCATTGTGGGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179524804 199 - 180051392 ATATTTAAATAAGATCCCTGGGGTTCAGGGCATACCGTATTTGATTATCACTGGATTTAGGGGTCTGCCCAGGCCAGCTCCCTGCCAGACGGAGAGGAAATTCTTTTCCAAGGAAGGTAAAATCACCCAGACCTCTCAAACCAACCCCCATTTACTACAGAAAGGGCCCTCATGACTCCTGCACTTACCATCATGGGTG
i rheMac8.chr6             I 38 C 0
s macFas5.chr6             181258525 199 - 181584905 ATATTTAAATAAGATCCCTGGGGTTCAGGGCATACCGTATTTGATTATCACTGGATTTAGGGGTCTGCCCAGGCCAGCTCCCTGCCAGACGGAGAGGAAATTCTTTTCCAAGGAAGGTAAAATCACCCAGACCTCTCAAACCAACCCCCATTTACTACAGAAAGGGCCCTCATGACTCCTGCACTTACCATCATGGGTG
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      259682 199 -   1764207 gcatttaaataagatccctgggGTTCAGGGCATACCGTATTTGATTATCACTGGATTTAGGGGTCtgcccaggccagctccctgccagacggagaggaaactcttttccaaggaaggtaaaatcacccagacctctcaaaCCAACCCCCATTTACTACAGAAAGGGCCCTCATGACTCCTGCACTTACCATCATGGGTG
i macNem1.NW_012012389v1   I 1 C 0
s cerAty1.NW_012009470v1      270322 199 -  16742782 gcatttaaataagatccccgggGTTCAGGGCATACCGTATTTGATTATCACTGGATTTAGGGGTCTGCCCAGGCCAGCTCCCTGCCAGACGGAGAGGAAATTCTTTTCCAAGGAAGGTAAAATCACCCAGACCTCTCAAACCAACTCCCGTTTACTACAGAAAGGGCCCTCATGACTCCTGCACTTACCATCGTGGGTG
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90573525 199 -  91010382 gcatttaaataagatccctgggGTTCAGGGCATACCGTATTTGATTATCACTGGATTTAGGGGTCTGCCCAGCCCAGCTCCCTGCCAGACAGAGAGGAAATTCTTTTCCAAGGAAGGTAAAATCACCCAGACCTCTCAAACCAACCCCCATTTACTACAGAAAGGGCCCTCATGACTCCTGCACTTACCATCGTGGGTG
i chlSab2.chr4             I 1 C 0
s manLeu1.NW_012110441v1      167774 199 -    438239 gcatttaaataagatccGTGGGGTTCAGGGCATACCGTATTTGATTATCACTGGATTTAGGGGTCTGCCCAGGCCAGCTCCCTGCCAGACGGAGAGGAAATTCTTTTCCAAGGAAGGTAAAATCACCCAGACCTCTCAAACCAACCCCCATTTACTACAGAAAGGGCCCTCATGACTCCTGCACTTACGATCGTGGGTG
i manLeu1.NW_012110441v1   I 1 C 0
s colAng1.NW_012118799v1      197110 199 -    514179 gcatttaaataagattcctgggGTTCAGGGCATACCATATTTGATTATCACTGGATTTAGGGGTCTGCACAGcccagctccctgccagacggagaggaaattcttttccaaggaaggtaaaatcacccagacctctcaaaCCAACCCCCATTTACTACAGAAAAGGCCTTCATGACTCCTGCACTTACCATCGTGGGTG
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203852225 180 + 204313951 gcattgaaacaagatccctgggGTT----------CATGTTTGATTATCACTGGATTTAGGGGTCTGCCCAG-----CTCCCTGC----CAGAGAGGAAATTCTTTTCCATGGAAGGTAAAATCACCCAGACCTCTCAAACCAACCCCCATTTACTACAGAGATGGCTCTTAGGACACCTGCACTTAGCATTGTAAGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012598 194 +  16417988 gcatttaaacaagatccctgggGTTCGGGGCACACCATGTTTAATTATCACCGGACTTAAGGGTCTGCCCAG-----CTCCCTGCCAGACAGAGAGGAAATTCCTTTCCAAAGAAGGTAAAATCACCCCGACCTCTCAAACCAACCCCCATTTACTACAGAGATGGCTCTTAGGATACCCGCACTTAGCATTGGAGGTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       95909 193 +    298490 gcatttaaacaagatccctgggGTTCGGGGCACACCATGTTTAA-TATCACTGGACTTAGGGGTCTGcccag-----ctccctgccagacagagaggaaattcttttccaaggaaggtaaaatcacccagacctctcaaaCCAACCCCCATTAACTACAGAGATGGCTCTTAGGACACCTGCATTTAGCATTGTAGGTG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25427325 194 -  25620257 gcatttaaacaggatccctgggGTTCAGGGCATGCCATGTTTAATTAtgactggatttaggggtctgcccag-----ctccctgccaggcagagaggaaattcttttccaaggaaggtaaaatcacccagacctttcaaaCCAACCCCCATTTACTACACAGATGGCTCTTAGGACACCTGCGCTTACCATCGCAGGTG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e canFam3.chr34             11719112 2836 +  42124431 I

a score=107700.000000
s hg38.chr5_KI270793v1_alt     68708 10 +    126136 GCAATGCGGG
s panTro5.chr5             181331915 10 - 181907262 gcaatgcggg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052413 10 - 183735486 GCAATGCGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140980 10 +    698298 GCAATGCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570285 10 - 121039945 GCAATGCGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179525003 10 - 180051392 GCAATGCAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258724 10 - 181584905 GCAATGCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259881 10 -   1764207 GCAATGCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270521 10 -  16742782 GCAATGCGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573724 10 -  91010382 GCAATGCGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      167973 10 -    438239 GCAATGCGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197309 10 -    514179 ACAATGCGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852405 10 + 204313951 GCAATGCAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012792 10 +  16417988 GAAACGCAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       96102 10 +    298490 GCAATGCAGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25427519 10 -  25620257 GCAATGCAGG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11721948 10 +  42124431 GCAGTAAGGG
i canFam3.chr34            I 2836 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I

a score=73809.000000
s hg38.chr5_KI270793v1_alt     68718 8 +    126136 TTGTCCAA
s panTro5.chr5             181331925 8 - 181907262 ttgtccaa
i panTro5.chr5             C 0 I 15
s panPan2.chr5             183052423 8 - 183735486 TTGTCCAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      140990 8 +    698298 TTGTCCAA
i gorGor5.CYUI01015805v1   C 0 I 33
s nomLeu3.chr6             120570295 8 - 121039945 TTGTCCAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179525013 8 - 180051392 TTGTCCAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258734 8 - 181584905 TTGTCCAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259891 8 -   1764207 TTGTCCAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270531 8 -  16742782 TTGTCCAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573734 8 -  91010382 TTGTCCAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      167983 8 -    438239 TTGTCCAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197319 8 -    514179 TTGTCCAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852415 8 + 204313951 TGGTCCAA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012802 8 +  16417988 TGGTCCAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       96112 8 +    298490 TGGTCCAA
i cebCap1.NW_016108158v1   C 0 C 0
s canFam3.chr34             11721958 8 +  42124431 TGGTCTGT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I

a score=57482.000000
s hg38.chr5_KI270793v1_alt     68726 8 +    126136 GCTGTgtg-
s panPan2.chr5             183052431 8 - 183735486 GCTGTGTG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141031 8 +    698298 GGCGTGTG-
i gorGor5.CYUI01015805v1   I 33 C 0
s nomLeu3.chr6             120570303 8 - 121039945 GCTGTGTG-
i nomLeu3.chr6             C 0 T 17
s rheMac8.chr6             179525021 8 - 180051392 GCAGTGTG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258742 8 - 181584905 GCAGTGTG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259899 8 -   1764207 GCAGTGTG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270539 8 -  16742782 GCAGTGTG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573742 8 -  91010382 GCAGTGTG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      167991 8 -    438239 GCAGTGTG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197327 8 -    514179 GCAGTGTG-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852423 8 + 204313951 GCAGTGTA-
i calJac3.chr2             C 0 I 4
s saiBol1.JH378155          16012810 8 +  16417988 GCAGTGTG-
i saiBol1.JH378155         C 0 I 4
s cebCap1.NW_016108158v1       96120 8 +    298490 GCAGTGTG-
i cebCap1.NW_016108158v1   C 0 I 4
s canFam3.chr34             11721966 9 +  42124431 GCAGTGAGG
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I

a score=171614.000000
s hg38.chr5_KI270793v1_alt     68734 25 +    126136 gtggtccgggcagtg-tggtgg------------------tcca
s panPan2.chr5             183052439 25 - 183735486 GTGGTCCGGGGAGTG-TGGTGG------------------TCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141039 25 +    698298 GTGGTCCGGGCAGTG-TGGTGG------------------TCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570294 25 - 121039945 GTTGTCCAAGCTGTG-TGGTGG------------------TACA
i nomLeu3.chr6             T 17 C 0
s rheMac8.chr6             179525029 25 - 180051392 GTGGTCTGGGCAGTG-TGGTGG------------------TCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258750 25 - 181584905 GTGGTCTGGGCAGTG-TGGTGG------------------TCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259907 25 -   1764207 GTGGTCTGGGCAGTG-TGGTGG------------------TCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270547 25 -  16742782 GTGGTCCGGGCAGTG-TGGTGG------------------TCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573750 25 -  91010382 GTGGTCTGGGCAGTG-TGGTGG------------------TCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      167999 25 -    438239 GTGGTATGGGCAGTG-TGGTGG------------------TCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197335 25 -    514179 GTGGTCCGGGCAGTG-TGGTGG------------------TCCA
i colAng1.NW_012118799v1   C 0 I 4
s calJac3.chr2             203852435 43 + 204313951 GTGGTTTGGGCAGTA-AGGTGGTCCAGGCAGTGTGAGTACTCCA
i calJac3.chr2             I 4 C 0
s saiBol1.JH378155          16012822 25 +  16417988 GTGGTTTGGGCAGTA-AGGTGG------------------TCCA
i saiBol1.JH378155         I 4 C 0
s cebCap1.NW_016108158v1       96132 25 +    298490 GTGGTTTGGGCAGTA-AGGTGG------------------TCCA
i cebCap1.NW_016108158v1   I 4 C 0
s canFam3.chr34             11721975 26 +  42124431 GCAGTCTGTACAGTGAAGGCGG------------------ACTG
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529  0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I

a score=10920.000000
s hg38.chr5_KI270793v1_alt     68759 2 +    126136 -gg
s panPan2.chr5             183052464 2 - 183735486 -GG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141064 2 +    698298 -GG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570319 2 - 121039945 -GG
i nomLeu3.chr6             C 0 I 34
s rheMac8.chr6             179525054 2 - 180051392 -GG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258775 2 - 181584905 -GG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259932 2 -   1764207 -GG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270572 2 -  16742782 -GG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573775 2 -  91010382 -GG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168024 2 -    438239 -GG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203852478 2 + 204313951 -GG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012847 2 +  16417988 -GG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       96157 2 +    298490 -GG
i cebCap1.NW_016108158v1   C 0 C 0
s canFam3.chr34             11722001 2 +  42124431 TG-
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e colAng1.NW_012118799v1      197360 4 -    514179 I

a score=89946.000000
s hg38.chr5_KI270793v1_alt     68761 20 +    126136 catgatgagtggtccaggta
s panPan2.chr5             183052466 20 - 183735486 CACAGTGACTGGACCAGGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141066 20 +    698298 CATGATGAGTGGTCCGGGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570355 20 - 121039945 CAGAGTGACTGGTCCAGGCA
i nomLeu3.chr6             I 34 C 0
s rheMac8.chr6             179525056 20 - 180051392 CAGGGTGAGTGGTCTGGGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258777 15 - 181584905 CAGGGTGAGTGGTCT-----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259934 15 -   1764207 CAGGGTGAGTGGTTC-----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270574 20 -  16742782 CAGGGTGAGTGGTCTGGGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573777 20 -  91010382 CAGGGTGAGTGGTTCGGGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168026 20 -    438239 CAGGGTGAGTGGTTCGGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203852480 20 + 204313951 CAGGGTGAGTGCTCCTGGCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012849 20 +  16417988 CAGGGTGAGTGCTCTGGGCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       96159 20 +    298490 CAGGGTGAGTGCTCCAGGCA
i cebCap1.NW_016108158v1   C 0 C 0
s canFam3.chr34             11722003 20 +  42124431 CTGTGTGGGCGGTCTGTATA
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529  0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e colAng1.NW_012118799v1      197360  4 -    514179 I

a score=1370.000000
s hg38.chr5_KI270793v1_alt     68781 2 +    126136 gg-
s gorGor5.CYUI01015805v1      141086 2 +    698298 GG-
i gorGor5.CYUI01015805v1   C 0 I 9
s nomLeu3.chr6             120570375 1 - 121039945 -G-
i nomLeu3.chr6             C 0 I 1
s rheMac8.chr6             179525076 1 - 180051392 -G-
i rheMac8.chr6             C 0 I 1
s cerAty1.NW_012009470v1      270594 1 -  16742782 -G-
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90573797 1 -  91010382 -G-
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      168046 1 -    438239 -G-
i manLeu1.NW_012110441v1   C 0 I 1
s colAng1.NW_012118799v1      197364 1 -    514179 -G-
i colAng1.NW_012118799v1   I 4 I 1
s calJac3.chr2             203852500 1 + 204313951 -G-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012869 1 +  16417988 -G-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       96179 1 +    298490 -G-
i cebCap1.NW_016108158v1   C 0 I 1
s canFam3.chr34             11722023 2 +  42124431 -GT
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e macNem1.NW_012012389v1      259949 0 -   1764207 C
e macFas5.chr6             181258792 0 - 181584905 C
e panPan2.chr5             183052486 0 - 183735486 C

a score=5988.000000
s hg38.chr5_KI270793v1_alt     68783 3 +    126136 gtg-
s nomLeu3.chr6             120570377 3 - 121039945 GTG-
i nomLeu3.chr6             I 1 C 0
s rheMac8.chr6             179525078 3 - 180051392 GTG-
i rheMac8.chr6             I 1 C 0
s cerAty1.NW_012009470v1      270596 3 -  16742782 GTG-
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90573799 3 -  91010382 GTG-
i chlSab2.chr4             I 1 I 1
s manLeu1.NW_012110441v1      168048 3 -    438239 GTG-
i manLeu1.NW_012110441v1   I 1 C 0
s colAng1.NW_012118799v1      197366 3 -    514179 GTG-
i colAng1.NW_012118799v1   I 1 C 0
s cebCap1.NW_016108158v1       96181 3 +    298490 GTG-
i cebCap1.NW_016108158v1   I 1 I 1
s canFam3.chr34             11722025 4 +  42124431 GTAG
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e saiBol1.JH378155          16012870 0 +  16417988 C
e calJac3.chr2             203852501 0 + 204313951 C
e macNem1.NW_012012389v1      259949 0 -   1764207 C
e macFas5.chr6             181258792 0 - 181584905 C
e gorGor5.CYUI01015805v1      141088 9 +    698298 I
e panPan2.chr5             183052486 0 - 183735486 C

a score=1500.000000
s hg38.chr5_KI270793v1_alt     68786 1 +    126136 g
s rheMac8.chr6             179525081 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s cerAty1.NW_012009470v1      270599 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      168051 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197369 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s canFam3.chr34             11722029 1 +  42124431 G
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e saiBol1.JH378155          16012870 0 +  16417988 C
e calJac3.chr2             203852501 0 + 204313951 C
e nomLeu3.chr6             120570380 0 - 121039945 C
e chlSab2.chr4              90573802 1 -  91010382 I
e macNem1.NW_012012389v1      259949 0 -   1764207 C
e macFas5.chr6             181258792 0 - 181584905 C
e gorGor5.CYUI01015805v1      141088 9 +    698298 I
e panPan2.chr5             183052486 0 - 183735486 C

a score=8387.000000
s hg38.chr5_KI270793v1_alt     68787 4 +    126136 tggt
s panPan2.chr5             183052486 4 - 183735486 CAGT
i panPan2.chr5             C 0 C 0
s rheMac8.chr6             179525082 4 - 180051392 TGGT
i rheMac8.chr6             C 0 I 1351
s cerAty1.NW_012009470v1      270600 4 -  16742782 TGGT
i cerAty1.NW_012009470v1   C 0 I 45
s manLeu1.NW_012110441v1      168052 4 -    438239 TGGT
i manLeu1.NW_012110441v1   C 0 I 116
s colAng1.NW_012118799v1      197370 4 -    514179 TGGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852501 3 + 204313951 -GGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012870 3 +  16417988 -GCT
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11722030 4 +  42124431 TGGT
i canFam3.chr34            C 0 I 11
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e nomLeu3.chr6             120570380 0 - 121039945 C
e chlSab2.chr4              90573802 1 -  91010382 I
e macNem1.NW_012012389v1      259949 0 -   1764207 C
e macFas5.chr6             181258792 0 - 181584905 C
e gorGor5.CYUI01015805v1      141088 9 +    698298 I

a score=1000.000000
s hg38.chr5_KI270793v1_alt     68791 1 +    126136 g
s panPan2.chr5             183052490 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s calJac3.chr2             203852504 1 + 204313951 G
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012873 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11722045 1 +  42124431 G
i canFam3.chr34            I 11 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e nomLeu3.chr6             120570380 0 - 121039945 C
e manLeu1.NW_012110441v1      168056 116 -    438239 I
e chlSab2.chr4              90573802 1 -  91010382 I
e cerAty1.NW_012009470v1      270604 45 -  16742782 I
e colAng1.NW_012118799v1      197374 0 -    514179 C
e macNem1.NW_012012389v1      259949 0 -   1764207 C
e macFas5.chr6             181258792 0 - 181584905 C
e rheMac8.chr6             179525086 1351 - 180051392 I
e gorGor5.CYUI01015805v1      141088 9 +    698298 I

a score=1436.000000
s hg38.chr5_KI270793v1_alt     68792 2 +    126136 ag
s panPan2.chr5             183052491 2 - 183735486 AG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120570380 1 - 121039945 -G
i nomLeu3.chr6             C 0 C 0
s manLeu1.NW_012110441v1      168172 1 -    438239 -A
i manLeu1.NW_012110441v1   I 116 I 1
s calJac3.chr2             203852505 2 + 204313951 AG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012874 2 +  16417988 AG
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11722046 2 +  42124431 GG
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e chlSab2.chr4              90573802 1 -  91010382 I
e cerAty1.NW_012009470v1      270604 45 -  16742782 I
e colAng1.NW_012118799v1      197374 0 -    514179 C
e macNem1.NW_012012389v1      259949 0 -   1764207 C
e macFas5.chr6             181258792 0 - 181584905 C
e rheMac8.chr6             179525086 1351 - 180051392 I
e gorGor5.CYUI01015805v1      141088 9 +    698298 I

a score=18215.000000
s hg38.chr5_KI270793v1_alt     68794 9 +    126136 tggtcaggg
s panPan2.chr5             183052493 9 - 183735486 TGGTCCGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141097 9 +    698298 TGGGCAGGG
i gorGor5.CYUI01015805v1   I 9 C 0
s nomLeu3.chr6             120570381 9 - 121039945 TGGCCTGGG
i nomLeu3.chr6             C 0 T 69
s chlSab2.chr4              90573803 9 -  91010382 TGGTCTGGG
i chlSab2.chr4             I 1 C 0
s manLeu1.NW_012110441v1      168174 9 -    438239 TGGTTCGGG
i manLeu1.NW_012110441v1   I 1 C 0
s calJac3.chr2             203852507 9 + 204313951 TGGTCCAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012876 9 +  16417988 TGGTCCTGG
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11722048 9 +  42124431 CGGTCTGTG
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e cerAty1.NW_012009470v1      270604 45 -  16742782 I
e colAng1.NW_012118799v1      197374 0 -    514179 C
e macNem1.NW_012012389v1      259949 0 -   1764207 C
e macFas5.chr6             181258792 0 - 181584905 C
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=22185.000000
s hg38.chr5_KI270793v1_alt     68803 19 +    126136 cagtgtg-gtggtCTAAGCA
s panPan2.chr5             183052502 19 - 183735486 CAGTGTG-GTGGTCCAGGCA
i panPan2.chr5             C 0 I 2
s gorGor5.CYUI01015805v1      141106 16 +    698298 --GTG-A-GTAGTCTAGGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570321 19 - 121039945 CAGTGTG-CTGGTCTGGGCA
i nomLeu3.chr6             T 69 C 0
s macFas5.chr6             181258792  5 - 181584905 ---------------GGGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259949  5 -   1764207 ---------------GGGCA
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90573812 19 -  91010382 CAGTATG-GTGGTCTGGGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168183 19 -    438239 CAGTGTG-GTGGTCTGGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197374  7 -    514179 -------------CCGGGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852516 20 + 204313951 CAGGGTGAGTGCTCCTGGCA
i calJac3.chr2             C 0 I 2
s saiBol1.JH378155          16012885 20 +  16417988 CAGGGTGAGTGCTCTGGGCA
i saiBol1.JH378155         C 0 I 2
s canFam3.chr34             11722057 20 +  42124431 CTGTGTGGGCGGTCTGTGCA
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529  0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184  1 +    298490 I
e cerAty1.NW_012009470v1      270604 45 -  16742782 I
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=3451.000000
s hg38.chr5_KI270793v1_alt     68822 5 +    126136 GTGT-G-
s panPan2.chr5             183052523 5 - 183735486 ATGA-G-
i panPan2.chr5             I 2 C 0
s gorGor5.CYUI01015805v1      141122 6 +    698298 GTGTGG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570340 6 - 121039945 GTGTGG-
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258797 6 - 181584905 GTGTGG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259954 6 -   1764207 GTGTGG-
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90573831 6 -  91010382 GTGTGG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168202 6 -    438239 GTGTGG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197381 6 -    514179 GTGTGG-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852538 5 + 204313951 GTGAG--
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          16012907 5 +  16417988 GCGAG--
i saiBol1.JH378155         I 2 C 0
s canFam3.chr34             11722077 7 +  42124431 GTGAGGG
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e aotNan1.NW_018503740v1    25427529 0 -  25620257 C
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e cerAty1.NW_012009470v1      270604 45 -  16742782 I
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=49494.000000
s hg38.chr5_KI270793v1_alt     68827 11 +    126136 TGGCCTAGGTA
s panPan2.chr5             183052528 11 - 183735486 TGGTCCGGGTA
i panPan2.chr5             C 0 I 6
s gorGor5.CYUI01015805v1      141128 11 +    698298 TGATCCAGGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570346 11 - 121039945 TGGTCCGGGCA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258803 11 - 181584905 TGGTCCAGGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259960  5 -   1764207 TGGTC------
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90573837 11 -  91010382 TGGTCCAGGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168208 11 -    438239 TGGTCTAGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197387 11 -    514179 TGGTCCAGGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852543 11 + 204313951 TGGTCCAGGCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012912 11 +  16417988 TGCTCCAGGCA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25427529 11 -  25620257 TGGCCCAGGTA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11722084 11 +  42124431 TGGTCTGTGCA
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181331933 15 - 181907262 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184  1 +    298490 I
e cerAty1.NW_012009470v1      270604 45 -  16742782 I
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=30729.000000
s hg38.chr5_KI270793v1_alt     68838 6 +    126136 GGGTGA--
s panTro5.chr5             181331948 6 - 181907262 gggtgA--
i panTro5.chr5             I 15 C 0
s panPan2.chr5             183052545 6 - 183735486 TGGTGA--
i panPan2.chr5             I 6 C 0
s gorGor5.CYUI01015805v1      141139 6 +    698298 GTGTGA--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570357 6 - 121039945 GAGTGA--
i nomLeu3.chr6             C 0 T 52
s macFas5.chr6             181258814 6 - 181584905 GGGTGA--
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90573848 6 -  91010382 GGGTGA--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168219 6 -    438239 GGGTGA--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197398 6 -    514179 GGGTGA--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852554 6 + 204313951 GGGTGA--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012923 6 +  16417988 GGGTGA--
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25427540 6 -  25620257 GGGTGA--
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11722095 6 +  42124431 --GTGAGG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e cerAty1.NW_012009470v1      270604 45 -  16742782 I
e macNem1.NW_012012389v1      259965 0 -   1764207 C
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=70762.000000
s hg38.chr5_KI270793v1_alt     68844 14 +    126136 GTGCTCCAGGCAGT
s panTro5.chr5             181331954 14 - 181907262 GTGCTTCAGGCAGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052551 14 - 183735486 GTGCTTCAGGCAGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141145 14 +    698298 GTGCTCCAGGCAGT
i gorGor5.CYUI01015805v1   C 0 T 71
s nomLeu3.chr6             120570311 14 - 121039945 GTGGTACAGGCAGT
i nomLeu3.chr6             T 52 C 0
s macFas5.chr6             181258820 14 - 181584905 GTGGTTTGGGCAGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259965  8 -   1764207 ------TGGGCAGT
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90573854 14 -  91010382 GTGGTTTGGGCAGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168225 14 -    438239 GTGGTCTGGGCAGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197404 14 -    514179 GTGGTTCAGGCAGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852560 14 + 204313951 GTGCTCCTGGCAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012929 14 +  16417988 GTACTCCTGGCAGG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25427546 14 -  25620257 GTGCTCCGGGCAGC
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11722101 14 +  42124431 GTGGTCTGTGCAGT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184  1 +    298490 I
e cerAty1.NW_012009470v1      270604 45 -  16742782 I
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=28732.000000
s hg38.chr5_KI270793v1_alt     68858 4 +    126136 GTGG
s panTro5.chr5             181331968 4 - 181907262 GTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052565 4 - 183735486 GTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141088 4 +    698298 GTGG
i gorGor5.CYUI01015805v1   T 71 C 0
s nomLeu3.chr6             120570325 4 - 121039945 GTGC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258834 4 - 181584905 GTGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259973 4 -   1764207 GTGG
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90573868 4 -  91010382 GTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168239 4 -    438239 GTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197418 4 -    514179 GTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852574 4 + 204313951 GTGA
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16012943 4 +  16417988 GTGA
i saiBol1.JH378155         C 0 I 1
s aotNan1.NW_018503740v1    25427560 4 -  25620257 GTGA
i aotNan1.NW_018503740v1   C 0 I 1
s canFam3.chr34             11722115 4 +  42124431 GTGG
i canFam3.chr34            C 0 I 1
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e cerAty1.NW_012009470v1      270604 45 -  16742782 I
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=111614.000000
s hg38.chr5_KI270793v1_alt     68862 19 +    126136 TGGTCTGGGCA-GGGTGAGT
s panTro5.chr5             181331972 19 - 181907262 TGGTCTGGGCA-GGGTGAGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052569 19 - 183735486 TGGTCTGGGCA-GGGTGAGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141092 20 +    698298 TGGTCTGGGCAGGGGTGAGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570329 11 - 121039945 TGGTCTGGGCA---------
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258838 18 - 181584905 TGGTCTGGGCA-GTGTG-GT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259977 19 -   1764207 TGGTCTAGGCA-GGGTGAGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270649 19 -  16742782 TGGTCCAGGCA-GGGTGAGT
i cerAty1.NW_012009470v1   I 45 C 0
s chlSab2.chr4              90573872 19 -  91010382 TGGTCCAGGCA-GGGTGAGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168243 19 -    438239 TGGTCCAGGCA-GGGTGAGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197422 19 -    514179 TGGTCCAGGCA-GGGTGAGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852579 19 + 204313951 TGGTCCGGGCA-GGGTGAGT
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16012948 12 +  16417988 TGCTCCGGGCA-G-------
i saiBol1.JH378155         I 1 T 159
s aotNan1.NW_018503740v1    25427565 19 -  25620257 TGCTCCTGGCA-GGGTGAGT
i aotNan1.NW_018503740v1   I 1 I 33
s canFam3.chr34             11722120 19 +  42124431 TGGTCTGTACA-GTGTGGGT
i canFam3.chr34            I 1 C 0
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184  1 +    298490 I
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=83032.000000
s hg38.chr5_KI270793v1_alt     68881 23 +    126136 AGTCTAGGCAGTGTG-----------------GTGATCCG
s panTro5.chr5             181331991 23 - 181907262 AGTCTAGGCAGTGTG-----------------GTGATCCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052588 23 - 183735486 AGTCTAGGCAGTGTG-----------------GTGATCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141112 23 +    698298 AGTCTAGGCAGTGTG-----------------GTGATCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570340 13 - 121039945 ----------GTGTG-----------------GTGGTCCG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258856 24 - 181584905 GGTCTAGGCAGGGTG----------------AGTGGTCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      259996 24 -   1764207 GGTCCAGGCAGGGTG----------------AGTGGTCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270668 23 -  16742782 GGTTTGGGCAGTGTG-----------------GTGGTCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573891 23 -  91010382 GGTCTAGGCAGTGTG-----------------GTGGTCCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168262 40 -    438239 GGTCCGGACAGTGTGCTGGTCTGGGCAGATGAGTGGTCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197441 23 -    514179 GGTTCAGGCAGTGTG-----------------CTGGTCTG
i colAng1.NW_012118799v1   C 0 T 104
s calJac3.chr2             203852598 24 + 204313951 GCTCCAGGCAGGGTG----------------ATTGGTCCG
i calJac3.chr2             C 0 C 0
s canFam3.chr34             11722139 23 +  42124431 GGTCTGTGCAGTGAG-----------------GGCATCTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184  1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=36525.000000
s hg38.chr5_KI270793v1_alt     68904 6 +    126136 GGCAGT
s panTro5.chr5             181332014 6 - 181907262 GGCAGT
i panTro5.chr5             C 0 T 70
s panPan2.chr5             183052611 6 - 183735486 GGCAGT
i panPan2.chr5             C 0 T 70
s gorGor5.CYUI01015805v1      141135 6 +    698298 GGCAGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570353 6 - 121039945 GGCAGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258880 6 - 181584905 GGCAGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260020 6 -   1764207 GGCAGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270691 6 -  16742782 GGCAGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573914 6 -  91010382 GGCAAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168302 6 -    438239 GGCAGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197360 6 -    514179 GGCAGT
i colAng1.NW_012118799v1   T 104 C 0
s calJac3.chr2             203852622 6 + 204313951 GGCAGG
i calJac3.chr2             C 0 C 0
s canFam3.chr34             11722162 6 +  42124431 TGCAGT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=361006.000000
s hg38.chr5_KI270793v1_alt     68910 108 +    126136 GTGA--------------------------------------------------GTGCTCCAGGCAGTGTG-GTGGTCTGGGCA-GGGTGAGTAGTCTAGGCAGTGTG-GTGATCCGGGCAG-----------------TGTGAGTGCTCCAGGCAGTGTG-GTGGTCCGGGTAGGGTG-
s panTro5.chr5             181331950 108 - 181907262 gtgA--------------------------------------------------GTGCTTCAGGCAGTGTG-GTGGTCTGGGCA-GGGTGAGTAGTCTAGGCAGTGTG-GTGATCCGGGCAG-----------------TGTGAGTGCTCCAGGCAGTGTG-GTGGTCTGGGTAGGGTG-
i panTro5.chr5             T 70 C 0
s panPan2.chr5             183052547 108 - 183735486 GTGA--------------------------------------------------GTGCTTCAGGCAGTGTG-GTGGTCTGGGCA-GGGTGAGTAGTCTAGGCAGTGTG-GTGATCTGGGCAG-----------------TGTGAGTGCTCCAGGCAGTGTG-GTGGTCTGGGTAGGGTG-
i panPan2.chr5             T 70 C 0
s gorGor5.CYUI01015805v1      141141 108 +    698298 GTGA--------------------------------------------------GTGCTCCAGGCAGTGTG-GTGGTCCGGGTA-GGGTGAGTGGTCCAGGCAGTGTG-GTGCTCCAGGCGG-----------------AGTGAGTGGTCTGGGCAGTGTG-GTGGTCCGGGTAGGGTG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570359 108 - 121039945 GTGA--------------------------------------------------CTGGTCCAGGCAGTGTG-GTGGCCTGGGCA-GGGTGAGTGGTCTAAGCAGTGTG-GTGGCCCAGGTAG-----------------GGTGAGTGTTCCAGGCAGTGTG-GTGGCCCAGGTAGGGTG-
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258886  89 - 181584905 GTG---------------------------------------------------GTGGTCCAGGCAGGGTGAGTGGTCCGGACA-GTGTGC-TGGTCTGGGCAGATGA-GTGGTCCAGGCGG-----------------TGTG-GTGGTTCGCGCAGTGTG-------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260026  89 -   1764207 GTG---------------------------------------------------GTGGTCCAGGCAGGGTGAGTGGTCCGGACA-GTGTGC-TGGTCTGGGCAGATGA-GTGGTCCAGGCAG-----------------TGTG-GTGGTTCGGGCAGTGTG-------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270697  89 -  16742782 GTG---------------------------------------------------GTGATCCAGGCAGTGTG-GTGGTCCAGGCA-GGGTGAGTGGTTCGGGCAGTGTG-GTGGTCCAGGCAG-----------------TGTG-GTAATCCAGGCAGTGTG-------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90573920 107 -  91010382 GTGTTG-----------------GTCTGGGCAGATGA-----------------GTGGTCCAGGCAGTGTG-GTGGTTCAGGCA-GGGTGAGTGGTCCGGGCAGTGTG-GTGGTCCAGGCAG-----------------GGTGAGTGGTCCAGGCAGTGTG-------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168308 159 -    438239 GTGGTGGTTCGGGCAGTGTGGTAGTCTGGGCGGGTGACTGGTCAAGACAGTGTGGTGGTCCAGATAGTGTG-GTGGTCTGGGCA-GGGTGAGTGGTCCAGGCAGTGTG-GTGGTCCAGGCAG-----------------GGTGAGTGGTCCAGGCAGGGTAAGTGGTCCGGGCAGTGTG-
i manLeu1.NW_012110441v1   C 0 I 52
s colAng1.NW_012118799v1      197366 104 -    514179 GTG---------------------------------------------------GTGGTCCGGGCAGTGTG-GTGGTCCAGGCA-GGGTGAGTGGTTCAGGCAGTGTG-GTGGTCCAGGCAG-----------------GGTGAGTGGTTCAGGCAGTGTG-CTGGTCTGGGCAGA----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852628 112 + 204313951 GTGA--------------------------------------------------GTGCTCCTGGCAGGGCGAGTGGTCTGGGCAGGGGTGAGTGCTCCTGGCAGGGTGAGTGCTCCTGGTAG-----------------GGTGAGTGGTCCGGGCAGGGTGAGTGGTCCTGGCAGGGTG-
i calJac3.chr2             C 0 I 1
s canFam3.chr34             11722168 128 +  42124431 GTAG--------------------------------------------------GTGGTCTGTGCAGTGTGGGTGGTCTGTGCA-GTGAGGGTGTTCTGTGCAGTGAG-GGCATCTGTGCAGTGAGGGCATCTGTGCTCTGTGGGCAGTCTGTGCAGTGTGGGTGGTCTGTGCAGTGAGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584  33 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184   1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=2252.000000
s hg38.chr5_KI270793v1_alt     69018 12 +    126136 GTAGTCTTAAC-A
s panTro5.chr5             181332058 12 - 181907262 GTAGTCTTAAC-A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052655 12 - 183735486 GTAGTCTTAAC-A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141249 12 +    698298 GTAGTCTTAAC-A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570467  1 - 121039945 A------------
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181258975 11 - 181584905 GTAGTCTGGGC--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260115 11 -   1764207 GTAGTCTGGGC--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270786 12 -  16742782 GTGGTCCAGGCA-
i cerAty1.NW_012009470v1   C 0 C 0
s calJac3.chr2             203852741 12 + 204313951 GTGCTCCTGGC-A
i calJac3.chr2             I 1 C 0
s canFam3.chr34             11722296 12 +  42124431 GTGGTCTGTGC-A
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184  1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e manLeu1.NW_012110441v1      168467 52 -    438239 I
e chlSab2.chr4              90574027  0 -  91010382 C
e colAng1.NW_012118799v1      197470  0 -    514179 C
e rheMac8.chr6             179525086 1351 - 180051392 I

a score=3960.000000
s hg38.chr5_KI270793v1_alt     69030 2 +    126136 GG-
s panTro5.chr5             181332070 2 - 181907262 GG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052667 2 - 183735486 GG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141261 2 +    698298 GG-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179526437 2 - 180051392 GG-
i rheMac8.chr6             I 1351 C 0
s macFas5.chr6             181258986 2 - 181584905 GG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260126 2 -   1764207 GG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270798 2 -  16742782 GG-
i cerAty1.NW_012009470v1   C 0 C 0
s calJac3.chr2             203852753 2 + 204313951 GG-
i calJac3.chr2             C 0 C 0
s canFam3.chr34             11722308 2 +  42124431 -GT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e otoGar3.GL873745           1866065 15869 -   2165740 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e nomLeu3.chr6             120570468 0 - 121039945 C
e manLeu1.NW_012110441v1      168467 52 -    438239 I
e chlSab2.chr4              90574027 0 -  91010382 C
e colAng1.NW_012118799v1      197470 0 -    514179 C

a score=21098.000000
s hg38.chr5_KI270793v1_alt     69032 4 +    126136 GTGA
s panTro5.chr5             181332072 4 - 181907262 GTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052669 4 - 183735486 GTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141263 4 +    698298 GTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179526439 4 - 180051392 GTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258988 4 - 181584905 GTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260128 4 -   1764207 GTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270800 4 -  16742782 GTGA
i cerAty1.NW_012009470v1   C 0 C 0
s colAng1.NW_012118799v1      197470 3 -    514179 -TGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852755 4 + 204313951 GCGA
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1881934 4 -   2165740 GTGA
i otoGar3.GL873745         I 15869 I 2
s canFam3.chr34             11722310 4 +  42124431 GTGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e nomLeu3.chr6             120570468 0 - 121039945 C
e manLeu1.NW_012110441v1      168467 52 -    438239 I
e chlSab2.chr4              90574027 0 -  91010382 C

a score=99258.000000
s hg38.chr5_KI270793v1_alt     69036 17 +    126136 GTG-GTCCGGGCAGTG-TG
s panTro5.chr5             181332076 17 - 181907262 GTG-GTCCGGGCAGTG-TG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052673 17 - 183735486 GTG-GTCCGGGCAGTG-TG
i panPan2.chr5             C 0 T 198
s gorGor5.CYUI01015805v1      141267 17 +    698298 GTG-GTCCGGGCAGTG-TG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179526443 17 - 180051392 CTG-GTCCAGACAGTG-TG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181258992 17 - 181584905 CTG-GTCGAGACAGTG-TG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260132 17 -   1764207 CTG-GTCGAGACAGTG-TG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270804 17 -  16742782 GTG-GTCCGGGCAGTG-TG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574027 17 -  91010382 GTG-GTCCGGGCAATG-TG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168519 17 -    438239 GTG-GTCCAGGCAATG-TG
i manLeu1.NW_012110441v1   I 52 C 0
s colAng1.NW_012118799v1      197473 17 -    514179 GTG-GTCCAGGCAGTG-TG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852759 17 + 204313951 GTG-GTCCGGGCAGAG-CG
i calJac3.chr2             C 0 I 1
s otoGar3.GL873745           1881940 18 -   2165740 GTGTATCTGGTCAGTG-TG
i otoGar3.GL873745         I 2 C 0
s canFam3.chr34             11722314 18 +  42124431 GTG-GTCTGTGCAGTGATG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96184  1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e nomLeu3.chr6             120570468  0 - 121039945 C

a score=70510.000000
s hg38.chr5_KI270793v1_alt     69053 10 +    126136 GTGGTCCGGG
s panTro5.chr5             181332093 10 - 181907262 GTGGTTCGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052492 10 - 183735486 GTGGTCCGGG
i panPan2.chr5             T 198 C 0
s gorGor5.CYUI01015805v1      141284 10 +    698298 GTGGTCCGGG
i gorGor5.CYUI01015805v1   C 0 T 245
s nomLeu3.chr6             120570468 10 - 121039945 GTGGTCCAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526460 10 - 180051392 GTGGTCCAGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259009 10 - 181584905 GTGGTCCAGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260149 10 -   1764207 GTGGTCCAGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270821 10 -  16742782 GTGGTCCGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574044 10 -  91010382 GTGGTCCAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168536 10 -    438239 GTGGTCCGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197490 10 -    514179 GTGATTTGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852777 10 + 204313951 GTGGTCCGGG
i calJac3.chr2             I 1 C 0
s otoGar3.GL873745           1881958 10 -   2165740 TATGTCCAGG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722332 10 +  42124431 GTGGTCTGTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96184  1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T

a score=93331.000000
s hg38.chr5_KI270793v1_alt     69063 15 +    126136 CAGTGTG-GTGGTCCG
s panTro5.chr5             181332103 15 - 181907262 CAGTGTG-GTGGTCCG
i panTro5.chr5             C 0 T 139
s panPan2.chr5             183052502 15 - 183735486 CAGTGTG-GTGGTCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141049 15 +    698298 CAGTGTG-GTGGTCCA
i gorGor5.CYUI01015805v1   T 245 C 0
s nomLeu3.chr6             120570478 15 - 121039945 CAGTGTG-GTAATCCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526470 15 - 180051392 CAGTGTG-GTGCCCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259019 15 - 181584905 TAGTGTG-GTGGTCCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260159 15 -   1764207 TAGTGTG-GTGGTCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270831 15 -  16742782 CAGTGTG-GTGGCCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574054 15 -  91010382 CAGTGTG-GTGGTCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168546 15 -    438239 CAGTGTG-GTGGTCCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197500 15 -    514179 CAGTGTG-GTAGTCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852787 16 + 204313951 CAGGGTGAGTGCTCCT
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1881968 15 -   2165740 CCATGTG-TTCGTCCT
i otoGar3.GL873745         C 0 I 6
s canFam3.chr34             11722342 16 +  42124431 CAGTGAGGGTGGTCTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96184  1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T

a score=80745.000000
s hg38.chr5_KI270793v1_alt     69078 12 +    126136 GGCAGGGTGAGT
s panTro5.chr5             181331979 12 - 181907262 GGCAGGGTGAGT
i panTro5.chr5             T 139 C 0
s panPan2.chr5             183052517 12 - 183735486 GGCATGATGAGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141064 12 +    698298 GGCATGATGAGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570493 12 - 121039945 GGCAGGGTGAGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526485 12 - 180051392 GGCAGGGTGAGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259034 12 - 181584905 GGCAGGGTGAGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260174 12 -   1764207 GGCAGGGTGAGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270846 12 -  16742782 GGCAGGGTGAGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574069 12 -  91010382 GGCAGGGTGAGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168561 12 -    438239 GGCAGGGTGAGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197515 11 -    514179 GGT-GGGTGACT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852803 12 + 204313951 GGCAGGGTGAGT
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1881989 12 -   2165740 TGCAGTGTGTGT
i otoGar3.GL873745         I 6 C 0
s canFam3.chr34             11722358 12 +  42124431 TGCTGTGTGGGC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96184  1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T

a score=45455.000000
s hg38.chr5_KI270793v1_alt     69090 8 +    126136 GGTCCGGA
s panTro5.chr5             181331991 8 - 181907262 AGTCTAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052529 8 - 183735486 GGTCCGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141076 8 +    698298 GGTCCGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570505 8 - 121039945 GGTCCGGA
i nomLeu3.chr6             C 0 T 201
s macFas5.chr6             181259046 8 - 181584905 GGTCCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260186 8 -   1764207 GGTCCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270858 8 -  16742782 GGTCCGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574081 8 -  91010382 GGTCCAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168573 8 -    438239 GGTCCGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197526 8 -    514179 GGTCCAGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852815 8 + 204313951 GCTCCTGG
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1882001 7 -   2165740 -GTCCAAG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722370 8 +  42124431 GGTCTGTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497 0 - 180051392 C

a score=38274.000000
s hg38.chr5_KI270793v1_alt     69098 7 +    126136 CAGTGTG
s panTro5.chr5             181331999 7 - 181907262 CAGTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052537 7 - 183735486 TAGGGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141084 7 +    698298 TAGGGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181259054 7 - 181584905 CAGTGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260194 7 -   1764207 CAGTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270866 7 -  16742782 CAGTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574089 7 -  91010382 CAGTGTG
i chlSab2.chr4             C 0 I 138
s manLeu1.NW_012110441v1      168581 7 -    438239 CAGTGTG
i manLeu1.NW_012110441v1   C 0 I 18
s colAng1.NW_012118799v1      197534 7 -    514179 TAGTGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852823 7 + 204313951 CAGGGTG
i calJac3.chr2             C 0 I 1
s otoGar3.GL873745           1882008 7 -   2165740 CAATGTG
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11722378 7 +  42124431 CAGTGAG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96184 1 +    298490 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e nomLeu3.chr6             120570513 201 - 121039945 T
e rheMac8.chr6             179526497 0 - 180051392 C

a score=37913.000000
s hg38.chr5_KI270793v1_alt     69105 5 +    126136 GTGGT
s panTro5.chr5             181332006 5 - 181907262 GTGAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052544 5 - 183735486 GTGGT
i panPan2.chr5             C 0 I 116
s gorGor5.CYUI01015805v1      141091 5 +    698298 GTGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181259061 5 - 181584905 GTGGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260201 5 -   1764207 GTGGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270873 5 -  16742782 GTGGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574234 5 -  91010382 GTGGT
i chlSab2.chr4             I 138 C 0
s manLeu1.NW_012110441v1      168606 5 -    438239 GTGGT
i manLeu1.NW_012110441v1   I 18 C 0
s colAng1.NW_012118799v1      197541 5 -    514179 GTGGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852831 5 + 204313951 GTGGT
i calJac3.chr2             I 1 C 0
s cebCap1.NW_016108158v1       96185 5 +    298490 GTGGT
i cebCap1.NW_016108158v1   I 1 C 0
s otoGar3.GL873745           1882016 5 -   2165740 GTGTC
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11722385 5 +  42124431 GTGGT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e nomLeu3.chr6             120570513 201 - 121039945 T
e rheMac8.chr6             179526497 0 - 180051392 C

a score=42514.000000
s hg38.chr5_KI270793v1_alt     69110 9 +    126136 TCGGGCAGT
s panTro5.chr5             181332011 9 - 181907262 CCGGGCAGT
i panTro5.chr5             C 0 T 70
s gorGor5.CYUI01015805v1      141096 9 +    698298 CTGGGCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181259066 9 - 181584905 CCAGGCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260206 9 -   1764207 CCAGGCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270878 9 -  16742782 CTGGGCAGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574239 9 -  91010382 TTGGGCAGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168611 9 -    438239 CCGGGCAGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197546 9 -    514179 CCGGGCAGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852836 9 + 204313951 CCGGGCAGG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       96190 9 +    298490 CCTGGCAGT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882021 9 -   2165740 CTGGGTAGT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722390 9 +  42124431 CTGTGCAGT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e nomLeu3.chr6             120570513 201 - 121039945 T
e rheMac8.chr6             179526497 0 - 180051392 C
e panPan2.chr5             183052549 116 - 183735486 I

a score=6228.000000
s hg38.chr5_KI270793v1_alt     69119 1 +    126136 G
s panTro5.chr5             181331950 1 - 181907262 g
i panTro5.chr5             T 70 C 0
s gorGor5.CYUI01015805v1      141105 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 I 1
s macFas5.chr6             181259075 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260215 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270887 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574248 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168620 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197555 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852845 1 + 204313951 G
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       96199 1 +    298490 G
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882030 1 -   2165740 A
i otoGar3.GL873745         C 0 I 2
s canFam3.chr34             11722399 1 +  42124431 G
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e nomLeu3.chr6             120570513 201 - 121039945 T
e rheMac8.chr6             179526497 0 - 180051392 C
e panPan2.chr5             183052549 116 - 183735486 I

a score=-3367.000000
s hg38.chr5_KI270793v1_alt     69120 4 +    126136 TGAA--
s panTro5.chr5             181331951 4 - 181907262 tgAG--
i panTro5.chr5             C 0 C 0
s macFas5.chr6             181259076 4 - 181584905 TGAG--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260216 4 -   1764207 TGAG--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270888 4 -  16742782 TGAG--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574249 3 -  91010382 TG-G--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168621 3 -    438239 TG-G--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197556 3 -    514179 TG-G--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852846 4 + 204313951 TGAG--
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       96200 4 +    298490 TGAG--
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882033 2 -   2165740 TG----
i otoGar3.GL873745         I 2 C 0
s canFam3.chr34             11722400 4 +  42124431 --AGgg
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e nomLeu3.chr6             120570513 201 - 121039945 T
e rheMac8.chr6             179526497 0 - 180051392 C
e gorGor5.CYUI01015805v1      141106 1 +    698298 I
e panPan2.chr5             183052549 116 - 183735486 I

a score=73148.000000
s hg38.chr5_KI270793v1_alt     69124 26 +    126136 TGCT---------------------------------------------------CCAGGCAG-TG-TG-GTGGT----------------------------------CCGGG
s panTro5.chr5             181331955 26 - 181907262 TGCT---------------------------------------------------TCAGGCAG-TG-TG-GTGGT----------------------------------CTGGG
i panTro5.chr5             C 0 I 87
s nomLeu3.chr6             120570312 26 - 121039945 TGGT---------------------------------------------------ACAGGCAG-TG-TG-CTGGT----------------------------------CTGGG
i nomLeu3.chr6             T 201 C 0
s macFas5.chr6             181259080 26 - 181584905 TGGT---------------------------------------------------CCAGGCAG-TA-TG-GTGGT----------------------------------CCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260220 26 -   1764207 TGGT---------------------------------------------------CCGGGCAG-TA-TG-GTGGT----------------------------------CCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270892 60 -  16742782 TAGT---------------------------------------------------CCAGGCAG-TG-TG-GTGGTCCGGGCAGTGTGGTGGTCCAGGCAGTGTGGTAGCCCAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574252 26 -  91010382 TGGT---------------------------------------------------CCAGGCAG-TG-TG-GTGGT----------------------------------CCAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168624 77 -    438239 TGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGGCAG-TG-TG-GTGGT----------------------------------CCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197559 26 -    514179 TGGT---------------------------------------------------CCAGGCAG-TG-TG-GTGGC----------------------------------CCAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852850 27 + 204313951 TGGT---------------------------------------------------CCGGGCAG-GG-TGAGTGCT----------------------------------CCGGG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       96204 27 +    298490 TGCT---------------------------------------------------CCGGGCAG-GA-TGAGTGGT----------------------------------CCGGG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882035 28 -   2165740 TGTC---------------------------------------------------CTGGACAGTTG-TGTGTGTC----------------------------------CTGGG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722404 27 +  42124431 tgtt---------------------------------------------------ctgtgcag-tgatg-gtggt----------------------------------ctgtg
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497  0 - 180051392 C
e gorGor5.CYUI01015805v1      141106  1 +    698298 I
e panPan2.chr5             183052549 116 - 183735486 I

a score=35730.000000
s hg38.chr5_KI270793v1_alt     69150 5 +    126136 CAGGG
s panTro5.chr5             181332068 5 - 181907262 CAGGG
i panTro5.chr5             I 87 C 0
s panPan2.chr5             183052665 5 - 183735486 CAGGG
i panPan2.chr5             I 116 C 0
s macFas5.chr6             181259106 5 - 181584905 CAGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260246 5 -   1764207 CAGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270952 5 -  16742782 CAGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574278 5 -  91010382 CAGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168701 5 -    438239 CAGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197585 5 -    514179 CAGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852877 5 + 204313951 CAGGG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       96231 5 +    298490 CAGGG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882063 5 -   2165740 CAGGG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722431 5 +  42124431 cagtg
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e nomLeu3.chr6             120570338 0 - 121039945 C
e rheMac8.chr6             179526497 0 - 180051392 C
e gorGor5.CYUI01015805v1      141106 1 +    698298 I

a score=181423.000000
s hg38.chr5_KI270793v1_alt     69155 28 +    126136 TGAGTGGTCCGGACAGTGTG-GTGGTTCG
s panTro5.chr5             181332073 28 - 181907262 TGAGTGGTCCGGGCAGTGTG-GTGGTTCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052670 28 - 183735486 TGAGTGGTCCGGGCAGTGTG-GTGGTTCG
i panPan2.chr5             C 0 T 149
s gorGor5.CYUI01015805v1      141107 28 +    698298 TGAGTAGTCTAGGCAGTGTG-GTGATCCA
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6             120570338 15 - 121039945 -------------CAGTGTG-GTGGTCCG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259111 28 - 181584905 TGAGTGGTCCGGGCAGTGTG-GTGGTCCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260251 28 -   1764207 TGAGTGGTCCGGGCAGTGTG-GTGGTCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270957 28 -  16742782 TGAGTGGTCTGGGCAGTGTG-GTGGTCCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574283 28 -  91010382 TGAGTGGTCCGGGCAGTGTG-GTGGTCCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168706 28 -    438239 TGAGTGGTCCGGGCAGTGTG-GTGGTCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197590 28 -    514179 TGAGTGGTCCAGGCAGTGTG-GTGGTCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852882 29 + 204313951 TGAGTGGTCCGGGCAGGGTGAGTGCTCCT
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       96236 29 +    298490 TGAGTGCTCTGGGCAGGGTGAGTGCTCCG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882068 29 -   2165740 TGTGTGTCCCAGGCAGTGTGAGTGTCCTG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722436 29 +  42124431 agggtggtctgtgcagtgtgggtggtctg
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497  0 - 180051392 C

a score=32068.000000
s hg38.chr5_KI270793v1_alt     69183 6 +    126136 GGCAGT
s panTro5.chr5             181332101 6 - 181907262 GGCAGT
i panTro5.chr5             C 0 T 157
s gorGor5.CYUI01015805v1      141135 6 +    698298 GGCAGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570353 6 - 121039945 GGCAGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259139 6 - 181584905 GGCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260279 6 -   1764207 GGCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270985 6 -  16742782 GGCACT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574311 6 -  91010382 GGCAGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168734 6 -    438239 GGCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197618 6 -    514179 GGCAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852911 6 + 204313951 GGCAGG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       96265 6 +    298490 GGGAGG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882097 6 -   2165740 GACAGG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722465 6 +  42124431 tgcagt
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497 0 - 180051392 C
e panPan2.chr5             183052698 149 - 183735486 T

a score=14599.000000
s hg38.chr5_KI270793v1_alt     69189 2 +    126136 GT
s panTro5.chr5             181331950 2 - 181907262 gt
i panTro5.chr5             T 157 C 0
s gorGor5.CYUI01015805v1      141141 2 +    698298 GT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570359 2 - 121039945 GT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259145 2 - 181584905 GT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260285 2 -   1764207 GT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270991 2 -  16742782 GT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574317 2 -  91010382 GT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168740 2 -    438239 GT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197624 2 -    514179 GT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852917 2 + 204313951 GT
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       96271 2 +    298490 GT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882103 2 -   2165740 GT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722471 2 +  42124431 ga
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497 0 - 180051392 C
e panPan2.chr5             183052698 149 - 183735486 T

a score=-1748.000000
s hg38.chr5_KI270793v1_alt     69191 2 +    126136 -GA
s panTro5.chr5             181331952 2 - 181907262 -gA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052549 2 - 183735486 -GA
i panPan2.chr5             T 149 C 0
s gorGor5.CYUI01015805v1      141143 2 +    698298 -GA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570361 2 - 121039945 -GA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259147 2 - 181584905 -GA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260287 2 -   1764207 -GA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270993 1 -  16742782 -G-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574319 1 -  91010382 -G-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168742 2 -    438239 -GA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197626 2 -    514179 -GA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203852919 2 + 204313951 -GA
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       96273 2 +    298490 -GA
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882105 2 -   2165740 -GT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722473 2 +  42124431 gg-
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497 0 - 180051392 C

a score=213632.000000
s hg38.chr5_KI270793v1_alt     69193 35 +    126136 GTGCTCCAGGCAGTGTG-GTGGTCTGGGCAGGGTGA
s panTro5.chr5             181331954 35 - 181907262 GTGCTTCAGGCAGTGTG-GTGGTCTGGGCAGGGTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052551 35 - 183735486 GTGCTTCAGGCAGTGTG-GTGGTCTGGGCAGGGTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141145 35 +    698298 GTGCTCCAGGCAGTGTG-GTGGTCCGGGTAGGGTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570363 35 - 121039945 CTGGTCCAGGCAGTGTG-GTGGCCTGGGCAGGGTGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259149 35 - 181584905 GTGGTCCGGGCAGTGTG-GTGGTCCAGGCAGGGTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260289 35 -   1764207 GTGGTCCGGGCAGTGTG-GTGGTCCAGGCAGGGTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      270994 35 -  16742782 GTGGTCCAGGCAGTGTG-GTGGCCCAGGCAGGGTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574320 35 -  91010382 GTGATCCAGGCAGTGTG-GTGGTCCAGGCAGAGTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168744 35 -    438239 GTGGTCCGGGCAGTGTG-GTGGTCCAGGCAGAGTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197628 35 -    514179 GTGGTCCAGGCAGTGTG-GTGGTCCGGGCAGGGTGA
i colAng1.NW_012118799v1   C 0 T 139
s calJac3.chr2             203852921 36 + 204313951 GTGCTCCTGGCAGGGTGAGTGGTCTGGGCAGGGTGA
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1882107 36 -   2165740 GTGTCATGGGCTGTGTGTGTGTCCTGGGCAGGGTGT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722475 36 +  42124431 gtgttctgtgcagtgagggtggtctgtgctgtgtgg
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96275  0 +    298490 C
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497  0 - 180051392 C

a score=139158.000000
s hg38.chr5_KI270793v1_alt     69228 31 +    126136 GTAGTCTAGGCAGTGTG-----------------GTGATCCGGGCAGT
s panTro5.chr5             181331989 31 - 181907262 GTAGTCTAGGCAGTGTG-----------------GTGATCCGGGCAGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052586 31 - 183735486 GTAGTCTAGGCAGTGTG-----------------GTGATCTGGGCAGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141180 31 +    698298 GTGGTCCAGGCAGTGTG-----------------GTGCTCCAGGCGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570398 31 - 121039945 GTGGTCTAAGCAGTGTG-----------------GTGGCCCAGGTAGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259184 30 - 181584905 GTGGTCCAGGCAGTGTG-----------------CTGGTCTGGGCA-G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260324 31 -   1764207 GTGGTCCGGGCAGTGTG-----------------GTGGTCCAGGCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271029 30 -  16742782 GT-GTCCAGGCAGTGTG-----------------GTGGTCCGGGCAGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574355 30 -  91010382 GTGGTCC-GGCAGTGTG-----------------GTGGTCCAGGCAGT
i chlSab2.chr4             C 0 I 17
s manLeu1.NW_012110441v1      168779 48 -    438239 GTGGTCCGGGCAGTGTGCTCATCTGGGCAGATGAATGGTCCAGGCAGT
i manLeu1.NW_012110441v1   C 0 T 225
s colAng1.NW_012118799v1      197524 31 -    514179 CTGGTCCAGATAGTGTG-----------------GTGGTCCGGGCAGT
i colAng1.NW_012118799v1   T 139 C 0
s calJac3.chr2             203852957 32 + 204313951 GTGGTCCTGGCAGGGTG----------------AGTGCTCCTGGCAGG
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1882143 32 -   2165740 GTGTCTTGGGAAGTGTG----------------TGTGTCCTGGGTAGG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722511 32 +  42124431 gtggtctgtgcagtgtg----------------ggtggtctgtgcagt
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96275  0 +    298490 C
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497  0 - 180051392 C

a score=110375.000000
s hg38.chr5_KI270793v1_alt     69259 38 +    126136 GTGAGTGCTCCAGGCAGTGTG---GTG-----------------GTCCGGG------------------------TAGGGTG-
s panTro5.chr5             181332020 38 - 181907262 GTGAGTGCTCCAGGCAGTGTG---GTG-----------------GTCTGGG------------------------TAGGGTG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052617 38 - 183735486 GTGAGTGCTCCAGGCAGTGTG---GTG-----------------GTCTGGG------------------------TAGGGTG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141211 38 +    698298 GTGAGTGGTCTGGGCAGTGTG---GTG-----------------GTCCGGG------------------------TAGGGTG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570429 38 - 121039945 GTGAGTGTTCCAGGCAGTGTG---GTG-----------------GCCCAGG------------------------TAGGGTG-
i nomLeu3.chr6             C 0 I 87
s macFas5.chr6             181259214 48 - 181584905 ATGAATGGTCCAGGCAGTGTG---GTGATTTGGGCAGTGTGGTAGTCTGGG--------------------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260355 31 -   1764207 GTGAGTGGTCCAGGCAGTGTG---CTG-----------------GTCTGGG--------------------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271059 31 -  16742782 GTGAGTGGTCCAGGCAGTGTG---GTG-----------------GTCCTGG--------------------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574402 31 -  91010382 GTGAGTGGTCCGGGCAGTGTG---GTG-----------------GCCCAGG--------------------------------
i chlSab2.chr4             I 17 C 0
s manLeu1.NW_012110441v1      168602 47 -    438239 GTGAGTGGTCCGGGCAGTGTG---GTG-----------------GTCNNNNNNNNNNNNNNNNNNNN----------------
i manLeu1.NW_012110441v1   T 225 I 294
s colAng1.NW_012118799v1      197555 37 -    514179 GTG-GTGGTCCAGGCAGTGTG---GTG-----------------GCCCAGG----------------CAGGGTG---------
i colAng1.NW_012118799v1   C 0 I 71
s calJac3.chr2             203852989 39 + 204313951 GTGAGTGGTCCGGGCAGAGCG--AGTG-----------------GTCCGGG------------------------CAGGGTG-
i calJac3.chr2             C 0 I 1
s otoGar3.GL873745           1882175 40 -   2165740 GTGTGTGTCCTGAGCAGGGTGTGTACG-----------------TCCTGGG-----------------------CTATGG---
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722543 39 +  42124431 gtaggtggtctgtgcagtgag---gtC-----------------ATCTGTG------------------------CAGTGTAG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96275  0 +    298490 C
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497  0 - 180051392 C

a score=11377.000000
s hg38.chr5_KI270793v1_alt     69297 10 +    126136 GTA-GTCTTAA
s panTro5.chr5             181332058 10 - 181907262 GTA-GTCTTAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052655 10 - 183735486 GTA-GTCTTAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141249 10 +    698298 GTA-GTCTTAA
i gorGor5.CYUI01015805v1   C 0 I 35
s nomLeu3.chr6             120570554 10 - 121039945 GTG-ATCCTGG
i nomLeu3.chr6             I 87 C 0
s calJac3.chr2             203853029 10 + 204313951 GTG-CTCCTGG
i calJac3.chr2             I 1 C 0
s otoGar3.GL873745           1882215 11 -   2165740 GTATGTCTTGG
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11722582 10 +  42124431 GTG-GTCTGTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96275  0 +    298490 C
e saiBol1.JH378155          16012960 159 +  16417988 T
e manLeu1.NW_012110441v1      168649 294 -    438239 I
e chlSab2.chr4              90574433  0 -  91010382 C
e cerAty1.NW_012009470v1      271090  0 -  16742782 C
e colAng1.NW_012118799v1      197592 71 -    514179 I
e macNem1.NW_012012389v1      260386  0 -   1764207 C
e macFas5.chr6             181259262  0 - 181584905 C
e rheMac8.chr6             179526497  0 - 180051392 C

a score=116947.000000
s hg38.chr5_KI270793v1_alt     69307 24 +    126136 CAGGGTGAGTG-GTCCGGGCAGTGT
s panTro5.chr5             181332068 24 - 181907262 CAGGGTGAGTG-GTCCGGGCAGTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052665 24 - 183735486 CAGGGTGAGTG-GTCCGGGCAGTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141294 24 +    698298 CAGGGTGAGTG-GTCCAGGCAGTGT
i gorGor5.CYUI01015805v1   I 35 C 0
s nomLeu3.chr6             120570564 24 - 121039945 CAGGGTGAGTG-ATCTGAACAGTGT
i nomLeu3.chr6             C 0 T 121
s macFas5.chr6             181259262 23 - 181584905 C-GGGTGACTG-GTCCAGACAGTGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260386 23 -   1764207 C-AGATGAATG-GTCCAGGCAGTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271090 24 -  16742782 CAGGGTGAGTG-GTCTGGGCAGTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574433 24 -  91010382 CAGGGTGAGTG-GTCCAGGCAGTGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168943 24 -    438239 CAGGGTGAGTG-GTTCGGGCAGTGT
i manLeu1.NW_012110441v1   I 294 C 0
s calJac3.chr2             203853039 24 + 204313951 CAGGGTGAGTG-GTCTGGGCAGGGT
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1882227 25 -   2165740 AAGTGTGTATGTGTCTGGGCAGTAT
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11722592 24 +  42124431 CAGTGTGGGCG-GTCTGTATAGTGT
i canFam3.chr34            C 0 I 1
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96275  0 +    298490 C
e saiBol1.JH378155          16012960 159 +  16417988 T
e colAng1.NW_012118799v1      197592 71 -    514179 I
e rheMac8.chr6             179526497  0 - 180051392 C

a score=6228.000000
s hg38.chr5_KI270793v1_alt     69331 1 +    126136 G
s panTro5.chr5             181332092 1 - 181907262 G
i panTro5.chr5             C 0 T 52
s panPan2.chr5             183052689 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141318 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570467 1 - 121039945 A
i nomLeu3.chr6             T 121 C 0
s macFas5.chr6             181259285 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260409 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271114 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574457 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168967 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203853063 1 + 204313951 G
i calJac3.chr2             C 0 I 1
s otoGar3.GL873745           1882252 1 -   2165740 G
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11722617 1 +  42124431 G
i canFam3.chr34            I 1 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96275 0 +    298490 C
e saiBol1.JH378155          16012960 159 +  16417988 T
e colAng1.NW_012118799v1      197592 71 -    514179 I
e rheMac8.chr6             179526497 0 - 180051392 C

a score=93995.000000
s hg38.chr5_KI270793v1_alt     69332 17 +    126136 GTGGTCCGGGCAGTGTG-
s panTro5.chr5             181332041 17 - 181907262 GTGGTCTGGGTAGGGTG-
i panTro5.chr5             T 52 C 0
s gorGor5.CYUI01015805v1      141319 17 +    698298 GTGGTCCGGGCAGTGTG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570468 17 - 121039945 GTGGTCCAGGCAGTGTG-
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259286 17 - 181584905 GTGGTCCAGACAGTGTG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260410 17 -   1764207 GTGATTTGGGCAGTGTG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271115 17 -  16742782 GTGGTCCGGGCAGTGTG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574458 17 -  91010382 GTGGTCCAGGCAGTGTG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168968 17 -    438239 GTGGTCCAGGCAGTGTG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197663 17 -    514179 GTGGTCCAGGCAGTGTG-
i colAng1.NW_012118799v1   I 71 C 0
s calJac3.chr2             203853065 17 + 204313951 GTGGTCCGGGCAGGGTG-
i calJac3.chr2             I 1 I 1
s otoGar3.GL873745           1882254 17 -   2165740 GTGTCCTGGGCAGTGTG-
i otoGar3.GL873745         I 1 I 1
s canFam3.chr34             11722618 18 +  42124431 GTGGTCTGTGCAGTGAGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96275  0 +    298490 C
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497  0 - 180051392 C
e panPan2.chr5             183052690  0 - 183735486 C

a score=35750.000000
s hg38.chr5_KI270793v1_alt     69349 6 +    126136 GTGGTC
s panTro5.chr5             181332058 6 - 181907262 GTAGTC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141336 6 +    698298 GTGGTC
i gorGor5.CYUI01015805v1   C 0 T 75
s nomLeu3.chr6             120570485 6 - 121039945 GTAATC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259303 6 - 181584905 GTGCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260427 6 -   1764207 GTAGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271132 6 -  16742782 GTGGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574475 6 -  91010382 GTGGTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168985 6 -    438239 GTGGTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197680 6 -    514179 GTGGTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853083 6 + 204313951 GTGCTC
i calJac3.chr2             I 1 C 0
s cebCap1.NW_016108158v1       96275 6 +    298490 GTGGTC
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882272 6 -   2165740 GTGTCC
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11722636 6 +  42124431 GTGGTC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497 0 - 180051392 C
e panPan2.chr5             183052690 0 - 183735486 C

a score=49752.000000
s hg38.chr5_KI270793v1_alt     69355 12 +    126136 CGGGCAGGGTGA
s panTro5.chr5             181332064 12 - 181907262 TTAACAGGGTGA
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120570491 12 - 121039945 CGGGCAGGGTGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259309 12 - 181584905 CAGGCAGGGTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260433 11 -   1764207 TGGGC-TGGTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271138 12 -  16742782 CAGGCAGGGTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574481 12 -  91010382 CGGGCAGAGTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      168991 12 -    438239 CAGGCAGGGTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197686 12 -    514179 CGGGCAGGGTGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853089 12 + 204313951 CTGGCAGGGTGA
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1       96281 12 +    298490 CTGGCAGGGTGA
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882278 12 -   2165740 TGGGCAGAATGT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722642 12 +  42124431 TGTGCAGTGAGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e saiBol1.JH378155          16012960 159 +  16417988 T
e rheMac8.chr6             179526497  0 - 180051392 C
e gorGor5.CYUI01015805v1      141342 75 +    698298 T
e panPan2.chr5             183052690  0 - 183735486 C

a score=23556.000000
s hg38.chr5_KI270793v1_alt     69367 3 +    126136 GTG
s panTro5.chr5             181332076 3 - 181907262 GTG
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120570503 3 - 121039945 GTG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259321 3 - 181584905 GTG
i macFas5.chr6             C 0 T 103
s macNem1.NW_012012389v1      260444 3 -   1764207 CTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271150 3 -  16742782 GTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574493 3 -  91010382 GTG
i chlSab2.chr4             C 0 I 17
s manLeu1.NW_012110441v1      169003 3 -    438239 GTG
i manLeu1.NW_012110441v1   C 0 I 17
s colAng1.NW_012118799v1      197698 3 -    514179 GTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853101 3 + 204313951 GTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012801 3 +  16417988 GTG
i saiBol1.JH378155         T 159 C 0
s cebCap1.NW_016108158v1       96293 3 +    298490 GTG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1882290 3 -   2165740 GTG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722654 3 +  42124431 GTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e rheMac8.chr6             179526497 0 - 180051392 C
e gorGor5.CYUI01015805v1      141342 75 +    698298 T
e panPan2.chr5             183052690 0 - 183735486 C

a score=30658.000000
s hg38.chr5_KI270793v1_alt     69370 4 +    126136 GTCC
s panTro5.chr5             181332079 4 - 181907262 GTCC
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120570506 4 - 121039945 GTCC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259221 4 - 181584905 GTCC
i macFas5.chr6             T 103 C 0
s macNem1.NW_012012389v1      260447 4 -   1764207 GTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271153 3 -  16742782 -TCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574513 4 -  91010382 GTCC
i chlSab2.chr4             I 17 C 0
s manLeu1.NW_012110441v1      169023 4 -    438239 GTCC
i manLeu1.NW_012110441v1   I 17 C 0
s colAng1.NW_012118799v1      197701 4 -    514179 GTCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853104 4 + 204313951 GTCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012804 4 +  16417988 GTCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       96296 4 +    298490 GTCC
i cebCap1.NW_016108158v1   C 0 I 1577
s otoGar3.GL873745           1882293 3 -   2165740 -TCC
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11722657 4 +  42124431 GTCT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e rheMac8.chr6             179526497 0 - 180051392 C
e gorGor5.CYUI01015805v1      141342 75 +    698298 T
e panPan2.chr5             183052690 0 - 183735486 C

a score=57862.000000
s hg38.chr5_KI270793v1_alt     69374 27 +    126136 GGACAGTGTG------------------GTGGTTCGGGCAGTGTG-
s panTro5.chr5             181332083 27 - 181907262 GGGCAGTGTG------------------GTGGTTCGGGCAGTGTG-
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120570510 27 - 121039945 GGACAGCGTG------------------GTGGTCTGCGTAGGGTG-
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259225 27 - 181584905 AGGCAGTGTG------------------GTGATTTGGGCAGTGTG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260451 27 -   1764207 AGACAGTGTG------------------GTGGTCCAGACAGTGTG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271156 27 -  16742782 AGGCAGTGTG------------------GTGGTCCGGGCAGAGTG-
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90574517 27 -  91010382 AGGCAGTGTG------------------GTGGTCCGGGCAGTGTG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169027 45 -    438239 AGGCAGTGTGGTGGTCCAGGCAGGGTGAGTGGTCCGGGCAGTGTG-
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203853108 10 + 204313951 -----------------------------------GGGCAGGGTG-
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16012808 10 +  16417988 -----------------------------------AAGCAGTGTG-
i saiBol1.JH378155         C 0 I 4
s otoGar3.GL873745           1882297 27 -   2165740 GGGCAGTATA------------------TGTGTCTGGGCAgtgtg-
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11722661 29 +  42124431 GTGCTGTGTGG-----------------GCGGTCTGTGCAGTGTAG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96300 1577 +    298490 I
e colAng1.NW_012118799v1      197705  0 -    514179 C
e rheMac8.chr6             179526497  0 - 180051392 C
e gorGor5.CYUI01015805v1      141342 75 +    698298 T
e panPan2.chr5             183052690  0 - 183735486 C

a score=15277.000000
s hg38.chr5_KI270793v1_alt     69401 3 +    126136 GTG
s panTro5.chr5             181332110 3 - 181907262 GTG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141267 3 +    698298 GTG
i gorGor5.CYUI01015805v1   T 75 C 0
s nomLeu3.chr6             120570537 3 - 121039945 TTG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181259252 3 - 181584905 GTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260478 3 -   1764207 GTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271184 3 -  16742782 GTG
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90574544 3 -  91010382 GTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169072 3 -    438239 GTG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203853119 3 + 204313951 TTG
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16012822 3 +  16417988 GTG
i saiBol1.JH378155         I 4 C 0
s otoGar3.GL873745           1882324 2 -   2165740 -tg
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11722690 3 +  42124431 GTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96300 1577 +    298490 I
e colAng1.NW_012118799v1      197705 0 -    514179 C
e rheMac8.chr6             179526497 0 - 180051392 C
e panPan2.chr5             183052690 0 - 183735486 C

a score=6175.000000
s hg38.chr5_KI270793v1_alt     69404 1 +    126136 G
s panTro5.chr5             181332113 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141270 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570540 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526497 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259255 1 - 181584905 G
i macFas5.chr6             C 0 I 68
s macNem1.NW_012012389v1      260481 1 -   1764207 C
i macNem1.NW_012012389v1   C 0 I 17
s cerAty1.NW_012009470v1      271187 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574547 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169075 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203853122 1 + 204313951 G
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012825 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1882327 1 -   2165740 g
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11722693 1 +  42124431 G
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96300 1577 +    298490 I
e colAng1.NW_012118799v1      197705 0 -    514179 C
e panPan2.chr5             183052690 0 - 183735486 C

a score=85915.000000
s hg38.chr5_KI270793v1_alt     69405 13 +    126136 TCTGGGCAGTGTG
s panTro5.chr5             181332114 13 - 181907262 TCCGGGCAGTGTG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141271 13 +    698298 TCCGGGCAGTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570541 13 - 121039945 TCCCGGTAGGGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526498 13 - 180051392 TCCAGGCAGTGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259324 13 - 181584905 TCCAGGCAGTGTG
i macFas5.chr6             I 68 C 0
s macNem1.NW_012012389v1      260499 13 -   1764207 TCCAGGCAGTGTG
i macNem1.NW_012012389v1   I 17 C 0
s cerAty1.NW_012009470v1      271188 13 -  16742782 TCTAGGCAGTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574548 13 -  91010382 TCCGGGCAGTGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169076 13 -    438239 TCCAGGCAGTGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197705 10 -    514179 ---AGGCAGTGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853123 13 + 204313951 TCTGGGCAGGGTG
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16012826 13 +  16417988 TTTGGGCAGTAAG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1882328 13 -   2165740 tctgggtagtgta
i otoGar3.GL873745         C 0 I 3
s canFam3.chr34             11722694 13 +  42124431 TCTGTGCAGTTAG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96300 1577 +    298490 I
e panPan2.chr5             183052690  0 - 183735486 C

a score=36670.000000
s hg38.chr5_KI270793v1_alt     69418 6 +    126136 GTGGTC
s panTro5.chr5             181332127 6 - 181907262 GTGGTC
i panTro5.chr5             C 0 T 40
s gorGor5.CYUI01015805v1      141284 6 +    698298 GTGGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570554 6 - 121039945 GTGATC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526511 6 - 180051392 GTGGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259337 6 - 181584905 GTGGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260512 6 -   1764207 GTGGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271201 6 -  16742782 GTGGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574561 6 -  91010382 GTAGTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169089 6 -    438239 GTGGTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197715 6 -    514179 GTGGTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853137 6 + 204313951 GTGCTC
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16012839 6 +  16417988 GTGGTC
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1882344 3 -   2165740 gtg---
i otoGar3.GL873745         I 3 C 0
s canFam3.chr34             11722707 6 +  42124431 GGCATC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96300 1577 +    298490 I
e panPan2.chr5             183052690 0 - 183735486 C

a score=74416.000000
s hg38.chr5_KI270793v1_alt     69424 12 +    126136 CAGGCAGGGTGA
s gorGor5.CYUI01015805v1      141290 12 +    698298 CGGGCAGGGTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570560 12 - 121039945 CTGGCAGGGTGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526517 12 - 180051392 CGGGCAGAGTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259343 12 - 181584905 CGGGCAGAGTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260518 12 -   1764207 CGGGCAGAGTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271207 12 -  16742782 CGGGCAGAGTGA
i cerAty1.NW_012009470v1   C 0 I 17
s chlSab2.chr4              90574567 12 -  91010382 CAGGCAGGGTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169095 12 -    438239 CAGGCAGGGTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197721 12 -    514179 CGGGCAGAGTGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853143 12 + 204313951 CTGGCAGGGTGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012845 12 +  16417988 CAGGCAGGGTGA
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1882347 12 -   2165740 tgggcagtgtgt
i otoGar3.GL873745         C 0 I 2
s canFam3.chr34             11722713 12 +  42124431 TGTGCTGTGTGG
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181332133 40 - 181907262 T
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96300 1577 +    298490 I
e panPan2.chr5             183052690  0 - 183735486 C

a score=56688.000000
s hg38.chr5_KI270793v1_alt     69436 8 +    126136 GTGGTCCG
s panTro5.chr5             181332093 8 - 181907262 GTGGTTCG
i panTro5.chr5             T 40 C 0
s panPan2.chr5             183052690 8 - 183735486 GTGGTTCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141302 8 +    698298 GTGGTCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570572 8 - 121039945 GTGATCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526529 8 - 180051392 GTGGTCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259355 8 - 181584905 GTGGTCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260530 8 -   1764207 GTGGTCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271236 8 -  16742782 GTGGTCCA
i cerAty1.NW_012009470v1   I 17 C 0
s chlSab2.chr4              90574579 8 -  91010382 GTGGTCCG
i chlSab2.chr4             C 0 I 104
s manLeu1.NW_012110441v1      169107 8 -    438239 GTGGTTCG
i manLeu1.NW_012110441v1   C 0 I 17
s colAng1.NW_012118799v1      197733 8 -    514179 GTGGTCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853155 8 + 204313951 GTGGTCCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012857 8 +  16417988 GTGCTCTG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1882361 3 -   2165740 gtg-----
i otoGar3.GL873745         I 2 C 0
s canFam3.chr34             11722725 8 +  42124431 GTGGTCTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96300 1577 +    298490 I

a score=74813.000000
s hg38.chr5_KI270793v1_alt     69444 8 +    126136 GGCAGTGT
s panTro5.chr5             181332101 8 - 181907262 GGCAGTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052698 8 - 183735486 GGCAGTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141310 8 +    698298 GGCAGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570580 8 - 121039945 AACAGTGT
i nomLeu3.chr6             C 0 T 75
s rheMac8.chr6             179526537 8 - 180051392 GGCAGTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259363 8 - 181584905 GGCAGTGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260538 8 -   1764207 GGCAGTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271244 8 -  16742782 GGCAGTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574691 8 -  91010382 GGCAGTGT
i chlSab2.chr4             I 104 C 0
s manLeu1.NW_012110441v1      169132 8 -    438239 GGCAGTAT
i manLeu1.NW_012110441v1   I 17 C 0
s colAng1.NW_012118799v1      197741 8 -    514179 GGCAGTGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853163 8 + 204313951 GGCAGGGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012865 8 +  16417988 GGCAGGCT
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1882364 8 -   2165740 ggcagtgt
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722733 8 +  42124431 TGCAGTGT
i canFam3.chr34            C 0 I 1
e aotNan1.NW_018503740v1    25427584 33 -  25620257 I
e cebCap1.NW_016108158v1       96300 1577 +    298490 I

a score=90306.000000
s hg38.chr5_KI270793v1_alt     69452 11 +    126136 G--GTGGTCCGGG
s panTro5.chr5             181332109 11 - 181907262 G--GTGGTCCGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052706 11 - 183735486 G--GTGGTCCGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141318 11 +    698298 G--GTGGTCCGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179526545 11 - 180051392 G--GTGGTCCGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259371 11 - 181584905 G--GTGGTCCGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260546 11 -   1764207 G--GTGGTCCGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271252 11 -  16742782 G--GTGGTCCGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574699 11 -  91010382 G--GTGGTCCGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169140 11 -    438239 G--GTGATCCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197749 11 -    514179 G--GTGGTCCGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853171 12 + 204313951 GA-GTGGTCCTGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012873 12 +  16417988 GA-GTGGTCCTGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       97877 10 +    298490 ---GTGGTCCTGG
i cebCap1.NW_016108158v1   I 1577 C 0
s aotNan1.NW_018503740v1    25427617 10 -  25620257 ---GTGGTCCAGG
i aotNan1.NW_018503740v1   I 33 C 0
s otoGar3.GL873745           1882372 12 -   2165740 -gtgtgtcctggg
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722742 11 +  42124431 G--GCGGTCTCTA
i canFam3.chr34            I 1 C 0
e nomLeu3.chr6             120570588 75 - 121039945 T

a score=113633.000000
s hg38.chr5_KI270793v1_alt     69463 13 +    126136 CAGTGTG-GTGGTC
s panTro5.chr5             181332120 13 - 181907262 CAGTGTG-GTGGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052717 13 - 183735486 CAGTATG-GTGGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141329 13 +    698298 CAGTGTG-GTGGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570513 13 - 121039945 CAGCGTG-GTGGTC
i nomLeu3.chr6             T 75 C 0
s rheMac8.chr6             179526556 13 - 180051392 CAGTGTG-GTGGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259382 13 - 181584905 CAGTGTG-GTGGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260557 13 -   1764207 CAGTGTG-GTGGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271263 13 -  16742782 CAGTGTG-GTGGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574710 13 -  91010382 CAGTGTG-GTGGTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169151 13 -    438239 CAGTGTG-GTGGTC
i manLeu1.NW_012110441v1   C 0 M 486
s colAng1.NW_012118799v1      197760 13 -    514179 CAGTGTG-GTGGTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853183 14 + 204313951 CAGGGTGAGTGCTC
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16012885 14 +  16417988 CAGGGTGAGTGCTC
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       97887 14 +    298490 CAGGGTGAGTGCTC
i cebCap1.NW_016108158v1   C 0 I 1
s aotNan1.NW_018503740v1    25427627 14 -  25620257 CAGGGTGAGTGCTC
i aotNan1.NW_018503740v1   C 0 I 1
s otoGar3.GL873745           1882384 13 -   2165740 cagtgtgtgtgtg-
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11722753 14 +  42124431 TAGTGTAGGTGGTC
i canFam3.chr34            C 0 C 0

a score=-8604.000000
s hg38.chr5_KI270793v1_alt     69476 3 +    126136 TGC
s panTro5.chr5             181332133 3 - 181907262 TGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052730 3 - 183735486 TGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141342 3 +    698298 TGC
i gorGor5.CYUI01015805v1   C 0 I 1
s nomLeu3.chr6             120570526 3 - 121039945 TGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526569 3 - 180051392 TGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259395 3 - 181584905 TGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260570 3 -   1764207 TGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271276 3 -  16742782 TGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574723 3 -  91010382 TGT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      197773 3 -    514179 TGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853198 2 + 204313951 TG-
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16012900 2 +  16417988 GG-
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1       97902 2 +    298490 GG-
i cebCap1.NW_016108158v1   I 1 C 0
s aotNan1.NW_018503740v1    25427642 2 -  25620257 GG-
i aotNan1.NW_018503740v1   I 1 C 0
s otoGar3.GL873745           1882398 2 -   2165740 gg-
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11722767 3 +  42124431 TGT
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1      169164 486 -    438239 M

a score=303804.000000
s hg38.chr5_KI270793v1_alt     69479 56 +    126136 GTAGGGTG-TTGGTCCCAGTAGGGTG-GTGAGCCTGGCAGGGTGAGTGA-------------------TCTGAACAG
s panTro5.chr5             181332136 56 - 181907262 GTAGGGTG-TTGGTCCCGGTAGGGTG-GTGAGCCTGGCAGGGTGAGTGA-------------------TCTGAACAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052733 56 - 183735486 ATAGGGTG-TTGGTCCCGGTAGGGTG-GTGAGCCTGGCAGGTTGAGTGA-------------------TCTGAACAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141346 56 +    698298 GTAGGGTG-TTGGTCCCGGTAGGGTG-GTGAGCCTGGCAGGGTGAGTGA-------------------TCTGAACAG
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6             120570529 56 - 121039945 GTAGGGTG-TTGGTCCCGGTAGGGTG-GTGATCCTGGCAGGGTGAGTGA-------------------TCTGAACAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526572 56 - 180051392 GTAGGGTG-TTGGTCCAGGTAGGGTG-GTGAGCCTGGCAGGGTGAGGGA-------------------TCTGAACAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259398 56 - 181584905 GTAGGGTG-TTGGTCCAGGTAGGGTG-GTGAGCCTGGCAGGGTGAGTGA-------------------TCTGAACAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260573 56 -   1764207 GTAGGGTG-TTGGTCCAGGTAGGGTG-GTGAGCCTGGCAGGGTGAGTGA-------------------TCTGAACAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271279 56 -  16742782 GTAGGGTG-TTGGTCCAGGTAGGGTG-GTGAGCCTGGCAGGGTGAGTGA-------------------TCTGAACAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574726 56 -  91010382 GTAGGGTG-TTGGTCCAGGTAGGGTG-GTGAGCCTGGCAGGGTGAGTGA-------------------TCTGAACAG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      197776 56 -    514179 GTAGGGTG-TTGGTCCAGGTAGGGTG-GTGAGCCTGGCAGGGTGAGTCA-------------------TCTGAACAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853200 77 + 204313951 GCAGGGTGAGTGGTCCGGGCAGGGTGAGTGGTCCTGGCAGGGTGAGTGCTTCCTGGCAGGGTGAGTGGTCCGGGCAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16012902 58 +  16417988 GCAGGGCGAGTGCTCCAGGCAGGGTGAGTACTCCTGGCAGGGTGAGTGC-------------------TCCGGGCAG
i saiBol1.JH378155         C 0 I 901
s cebCap1.NW_016108158v1       97904 22 +    298490 GCAGGGTGAGTGGTCTGAACAG-------------------------------------------------------
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25427644 22 -  25620257 GCAGGGTGAGTGCTCTGAACAG-------------------------------------------------------
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1882400 60 -   2165740 gcagtgtgtgtgtCCTAGGCAGTATGTGTGGGCTACGCAGTGTGGGTAGTT-----------------TCCCACTTG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722770 57 +  42124431 GCAGTGAG-GGCATCTGTGCAGTGTAGGTGGTCTGTGCAGTGTGGGCGG-------------------TCTGTATAG
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1      169164 486 -    438239 M

a score=27852.000000
s hg38.chr5_KI270793v1_alt     69535 3 +    126136 TGT
s panTro5.chr5             181332192 3 - 181907262 TGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052789 3 - 183735486 TGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141402 3 +    698298 TGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570585 3 - 121039945 TGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526628 3 - 180051392 TGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259454 3 - 181584905 TGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260629 3 -   1764207 TGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271335 3 -  16742782 TGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574782 3 -  91010382 TGT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      197832 3 -    514179 TGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203853277 3 + 204313951 GGT
i calJac3.chr2             C 0 I 759
s cebCap1.NW_016108158v1       97926 3 +    298490 TGT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25427666 3 -  25620257 AGT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1882460 3 -   2165740 TGT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11722827 3 +  42124431 TGT
i canFam3.chr34            C 0 I 1518
e saiBol1.JH378155          16012960 901 +  16417988 I
e manLeu1.NW_012110441v1      169164 486 -    438239 M

a score=115911.000000
s hg38.chr5_KI270793v1_alt     69538 20 +    126136 -TTCGTCTGGGGCAGAGGTAA
s panTro5.chr5             181332195 20 - 181907262 -TTCGTCTGGGGCAGAGGTAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052792 20 - 183735486 -TTCGTCTGGGGCAGAGGTAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141405 20 +    698298 -TTCGTCTGGGTCAGAGGTAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570588 20 - 121039945 -TTCATCTGGGGCAGAGGTAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526631 20 - 180051392 -TTCGTCTGGGGCAGAGGTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259457 20 - 181584905 -CTCGTCTGGGGCAGAGGTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260632 20 -   1764207 -TTTGTCTGGGGCAGAGGTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271338 20 -  16742782 -TTCGTCTGGGGCAGAGGTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574785 20 -  91010382 -TTCGTCTGGGGCAGAGGTGA
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      197835 20 -    514179 -TTCGTCTGGGGCAGAGGTGA
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       97929  9 +    298490 -TTTGTATGG-----------
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25427669 20 -  25620257 -TTTGTATGGGGCAGAGGTGC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1882463 18 -   2165740 TTTCCCCTGGGGCAGAGG---
i otoGar3.GL873745         C 0 C 0
e saiBol1.JH378155          16012960 901 +  16417988 I
e calJac3.chr2             203853280 759 + 204313951 I
e canFam3.chr34             11722830 1518 +  42124431 I
e manLeu1.NW_012110441v1      169164 486 -    438239 M

a score=414991.000000
s hg38.chr5_KI270793v1_alt     69558 56 +    126136 AGGTGCTGGC----AGAGACATCAAGCTCCGTCCATTTTCCCGGCAGTGCTGTTGAGTGT
s panTro5.chr5             181332215 56 - 181907262 AGGTGCTGGC----ACAGACATCAAGCTCCGTCCATTTTCCCGGCAGTGCTGTTGAGTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052812 56 - 183735486 AGGTGCTGGC----AGAGACATCAAGCTCCGTCCATTTTCCCGGCAGTGCTGTTGAGTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141425 56 +    698298 AGGTGCTGGC----AGAGACATCAAGCTCCGTCCATTTTCCCGGCAGTGCTGTTGAGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570608 56 - 121039945 AGGTGCTGGC----AGAGACATCGAGCTCCGTCCATTTTCCTGGCAGTGCTGTTGAGTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526651 56 - 180051392 AGGTGCTGGC----AGAGACATCAAGCTCCGTCCATTTTCCTGGCAGTGCTGTTGAGTAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259477 56 - 181584905 AGGTGCTGGC----AGAGACATCAAGCTCCGTCCATTTTCCTGGCAGTGCTGTTGAGTAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260652 56 -   1764207 AGGTGCTGGC----AGAGACATCAAGCTCCGTCCATTTTCCTGGCAGTGCTGTTGAGTAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271358 56 -  16742782 AGGTGCTGGC----AGAGACACCAAGCTCTGTCCATTTTCCTGGCAGTGCTGTTGAGTAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574805 56 -  91010382 AGGTGCTGGC----AGAGACATCAAGCTCCGTCCATTTTCCTGGCAGTGCCATTGAGTAC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      197855 56 -    514179 AGGTGCTGGC----AGAGACATCAAGCTCCGTCCATTTTCCTGGCAGTGCTGTTGAGTAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203854039 53 + 204313951 AGGTCCTGGC----GGAGACGTCAAGCTCCATCCATTTTCCTGGCAGTGCTGTTGAT---
i calJac3.chr2             I 759 C 0
s cebCap1.NW_016108158v1       97938 47 +    298490 -------GGC----AGAGACGTGAAGCTCCCTCCATTTTCCTGGCAGTGCTGTTGAGA--
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25427689 56 -  25620257 AGGTGCCGGC----AGAGACGTCAAGCTCCATCCATTTTCCTGGCAGTGTTGTTGAGCGT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1882481 51 -   2165740 AGTTGGTGACACAAAGAGACATCAAGTCCCA--------CTTGGCTGGGCAA-TGGGTGT
i otoGar3.GL873745         C 0 C 0
e saiBol1.JH378155          16012960 901 +  16417988 I
e canFam3.chr34             11722830 1518 +  42124431 I
e manLeu1.NW_012110441v1      169164 486 -    438239 M

a score=110535.000000
s hg38.chr5_KI270793v1_alt     69614 13 +    126136 GGCTGGAGGATCC
s panTro5.chr5             181332271 13 - 181907262 GGCTGGAGGATCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052868 13 - 183735486 GGCTGGAGGATCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141481 13 +    698298 GGCTGGAGGATCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570664 13 - 121039945 GGCTGGAGGATCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526707 13 - 180051392 GGCTAGAGGATCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259533 13 - 181584905 GGCTAGAGGATCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260708 13 -   1764207 GGCTAGAGGATCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271414 13 -  16742782 GGCTAGAGGATCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574861 13 -  91010382 GGCTTGAGGATCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169667 13 -    438239 GGCTAGAGGATCC
i manLeu1.NW_012110441v1   M 486 C 0
s colAng1.NW_012118799v1      197911 13 -    514179 GGCTAGAGGATCC
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       97985 13 +    298490 GGCTGGAGGATCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25427745 13 -  25620257 GGCTGGAGGATCC
i aotNan1.NW_018503740v1   C 0 I 244
s otoGar3.GL873745           1882532 13 -   2165740 GGCTGGGCCAGTC
i otoGar3.GL873745         C 0 C 0
e saiBol1.JH378155          16012960 901 +  16417988 I
e calJac3.chr2             203854092  0 + 204313951 C
e canFam3.chr34             11722830 1518 +  42124431 I

a score=32890.000000
s hg38.chr5_KI270793v1_alt     69627 5 +    126136 -GAGGG
s panTro5.chr5             181332284 5 - 181907262 -GAGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052881 5 - 183735486 -GAGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141494 5 +    698298 -GAGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570677 5 - 121039945 -GAGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526720 5 - 180051392 -GAGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259546 5 - 181584905 -GAGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260721 5 -   1764207 -GAGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271427 5 -  16742782 -GAGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574874 5 -  91010382 -GAGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169680 5 -    438239 -GAGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197924 5 -    514179 -GAGGG
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1       97998 5 +    298490 -CAGGG
i cebCap1.NW_016108158v1   C 0 I 58
s otoGar3.GL873745           1882545 5 -   2165740 TGGGG-
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e saiBol1.JH378155          16012960 901 +  16417988 I
e calJac3.chr2             203854092 0 + 204313951 C
e canFam3.chr34             11722830 1518 +  42124431 I

a score=199596.000000
s hg38.chr5_KI270793v1_alt     69632 34 +    126136 TGTGGTCTGAGCGACCTCAGTGGGGCCTTGATTG
s panTro5.chr5             181332289 34 - 181907262 TGTGGTTTGAGCGACCTCAGTGGGGCCTTGATTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052886 34 - 183735486 TGTGGTTTGAGCGACCTCAGTGGGGCCTTGATTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141499 34 +    698298 TGTGGTTTGAGCGACCTCAGTGGGGCCTTGATTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570682 34 - 121039945 TGTGGTTTGAGCGACCTCAGTGGGGCCTTGATTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526725 34 - 180051392 TGTGGTTTGACCGACCTCAGTGGGACCTTGATTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259551 34 - 181584905 TGTGGTTTGACCGACCTCAGTGGGACCTTGATTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260726 34 -   1764207 TGTGGTTTGACCGACCTCAGTGGGACCTTGATTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271432 34 -  16742782 TGTGGTTTGACCGACCTCAGTGGGACCTTGATTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574879 34 -  91010382 TGTGGTTTGACCGACCTCAGTGGGACCTTGATTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169685 34 -    438239 TGTGGTTTGACCGACCTCAGTGGGACCTTGATTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197929 34 -    514179 TGTGGTTTGACCGACCTCAGTGGGACCTTGATTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203854092 13 + 204313951 ---------AGCGACCTTAGTG------------
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1882550 21 -   2165740 -------------TCCTTTGTTAGGCCAAAGTTG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e cebCap1.NW_016108158v1       98003 58 +    298490 I
e saiBol1.JH378155          16012960 901 +  16417988 I
e canFam3.chr34             11722830 1518 +  42124431 I

a score=23556.000000
s hg38.chr5_KI270793v1_alt     69666 3 +    126136 CTG
s panTro5.chr5             181332323 3 - 181907262 CTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052920 3 - 183735486 CTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141533 3 +    698298 CTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570716 3 - 121039945 CTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179526759 3 - 180051392 CTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259585 3 - 181584905 CTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260760 3 -   1764207 CTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271466 3 -  16742782 CTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574913 3 -  91010382 CTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169719 3 -    438239 CTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197963 3 -    514179 CTG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16013861 3 +  16417988 CTC
i saiBol1.JH378155         I 901 C 0
s otoGar3.GL873745           1882571 3 -   2165740 CTG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e cebCap1.NW_016108158v1       98003 58 +    298490 I
e calJac3.chr2             203854105 0 + 204313951 C
e canFam3.chr34             11722830 1518 +  42124431 I

a score=2542502.000000
s hg38.chr5_KI270793v1_alt     69669 328 +    126136 GGTGTTGTCCAGAAACCCGCCGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGG------------------------------------------------------------------------------------------CAGGGGCAGGCAGCCACCTC------TGCACA----CAGGGCCACCCTCGCCACTGCT--------CTCCCCATTGGATTCTGCAGAGCCGGGGACTTCACGGCCCTGACCGCTGCCCTGTATCTCGGTGACGTGATGTGCTCGTGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCACAGCAAAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACGGGGCTG------TG-CCTGCTCCTTGGTGGGGA-
s panTro5.chr5             181332326 328 - 181907262 GGTGTTGTCCAGAAACCCGCCGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGG------------------------------------------------------------------------------------------CAGGGGCAGGCAGCCACCTC------TGCACA----CAGGGCCACCCTCGCCACTGCT--------CTCCCCATTGGATTCTGCAGAGCCGGGGACTTCACGGCCCTGACCGCTGCCCTGTATCTCAGTGACGTGATGTGCTCGTGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCACAGCAAAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACGGGGCTG------TG-CCTGCTCCTTGGTGGGGA-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183052923 328 - 183735486 GGTGTTGTCCAGAAACCCGCCGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGG------------------------------------------------------------------------------------------CAGGGGCAGGCAGCCACCTC------TGCACA----CACGGCCACCCTCGCCACTGCT--------CTCCCCATTGGATTCTGCAGAGCCGGGGACTTCACGGCCCTGACCGCTGCCCTGTATCTCAGTGACGTGATGTGCTCGTGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCACAGCAAAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACGGGGCTG------TG-CCTGCTCCTTGGTGGGGA-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141536 328 +    698298 GGTGTTGTCCAGAAACCTGCCGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGG------------------------------------------------------------------------------------------CAGGGGCAGGCAGCCACCTC------TGCACA----CAGGGCCACCCTCGCCACTGCT--------CTCCCCGTTGGATTCTGCAGAGCCGGGGACTTCACGGCCCTGACCGCTGCCCTGTATCTCGGTGACGTGATGTGCTCGTGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCACAGCAGAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACGGGGCTG------TG-CCTGCTCCTTGGTGGGGA-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120570719 329 - 121039945 GGTGTTGTCCAGAAACCCGCCGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGG------------------------------------------------------------------------------------------CAGGGGCAGGCGGCCACCTC------CGCACA----CAGGGCCACCCTCACCACTGCT--------CTCCCCATTGGATTCTGCAGAGGCGAGGACTTCACAGCCCTGACCGCTGCCCTGTATCTCGGTGATGTGATGTGCTCGTGTTGGTTTTTCCTGTCTTTTTTTAAACTTAATCAGAAATAAAGTAGAAGGTCAGAGTTCCACAGCAGAGAGGCACAGA-GGGAACGGCAGCTCCTTGGGTCCCACGGGGCTA------TGTCTTGCTCCTTGGCGGGGA-
i nomLeu3.chr6             C 0 M 702
s rheMac8.chr6             179526762 418 - 180051392 GGTGTTGTCCAGAAACCCGCGGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGGCGGGGGCAGGCGGTCACGTCTGCTGGGCTGGGGGTTGCTGGGCGGCGGGGGCAGGCGGTCACGTCTGCTGGGCTGGGGGTTGCTGGGCGGCGGGGGCAGGCGGTCACGTC------TGCACA----CAGGTCCACCCTCGCCACTGCT--------GTCCTCACTGGATTCTGCACAGCCGAGGACTTCACAGCCCTGACCGCTGCCCTGTATCTCAGTGACGTGATGTGCTCATGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCGCAGCAGAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACGGGGCTG-----CTG-CCTGCTCCTTGGCGGGA--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181259588 418 - 181584905 GGTGTTGTCCAGAAACCCGCGGCTCCTCCCACTGGCCTTGACCTTGGCTGGGCTGGGGGTTGCTGGGCGGCGGGGGCAGGCGGTCACGTCTGCTGGGCTGGGGGTTGCTGGGCGG---------------------------------------------CGGGGGCAGGCGGTCACGTCTGCTGGGCTGGGGGTTGCTGGGCGGCGGGGGCAGGCGGTCACGTC------TGCACA----CAGGTCCACCCTCGCCACTGCT--------GTCCTCACTGGATTCTGCACAGCCGAGGACTTCACAGCCCTGACCGCTGCCCTGTATCTCAGTGACGTGATGTGCTCATGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCGCAGCAGAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACGGGGCTG-----CTG-CCTGCTCCTTGGCGGGA--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      260763 373 -   1764207 GGTGTTGTCCAGAAACCCGCGGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGG---------------------------------------------CGGGGGCAGGCGGTCACGTCTGCTGGGCTGGGGGTTGCTGGGCGGCGGGGGCAGGCGGTCACGTC------TGCACA----CAGGTCCACCCTCGCCACTGCT--------GTCCTCACTGGATTCTGCACAGCCGAGGACTTCACAGCCCTGACTGCTGCCCTGTATCTCAGTGACGTGATGTGCTCATGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCGCAGCAGAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACGGGGCTG-----CTG-CCTGCTCCTTGGCGGGA--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271469 328 -  16742782 GGTGTTGTCCAGAAACCCGCGGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGG------------------------------------------------------------------------------------------CAGGGGCAGGCCGTCACGTC------TGCACA----CAGGTCCACCCTCGCCACTGCT--------GTCCCCACTGGATTCTGCACAGCCGAGGACTTCACAGCCCTGACCGCTGCCCTGTATCTCAGTGACGTGATGTGCTCATGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCGCAGCAGAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACGGGGCTG-----CTG-CCTGCTCCTTGGCGGGA--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90574916 328 -  91010382 GGTGTTGTCCAGAAACCCGCGGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGG------------------------------------------------------------------------------------------CAGGGGCAGGCAGTCACGTC------TGCACA----CAGGTCCACCCTCGCCACTGCT--------GTCCCCACTGGATTCTGCACAGTCGAGGACTTCACAGCCCTGACCGCTGCCCTGTATCTCAGTGACGTGATGTGCTCATGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCGCAGCAGAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACGGGGCTG-----CTG-CCTGCTCCTTGGCGGGA--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      169722 328 -    438239 GGTGTTGTCCAGAAACCCGCGGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGG------------------------------------------------------------------------------------------CAGGGGCAGGCGGTCACGTC------TGCACA----CAGGTCCACCCTCGCCACTGCT--------GTCCCCACTGGATTCTGCACAGCCGAGGACTTCACAGCCCTGACCGCTGCCCTGTATCTCAGTGACGTGATGTGCTCATGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCACAGCAGAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACGGGGCTG-----CTG-CCTGCTCCTTGGCGGGA--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      197966 328 -    514179 GGTGTTGTCCAGAAACCCATGGCTCCTCCCACTGGCCTTGACCTTG---------------------------------------------GCTGGGCTGGGGGTTGCTGGGCGG------------------------------------------------------------------------------------------CAGGGGCAGGCAGCCACCTC------TGCACA----CAGGTCCACCCTCGCCATTGCT--------CTCCCCACTGGATTCTGCACAGCCGAGGACTTCACAGCCCTGACCGCTGCCCGGTATCTCGGTGACGTGATGTGCTCATGTTGGTTTTTCCTGTCTTTTTTTAGACTTAATCAGAAATAAGGTAGAAGGTCAGAG-TCCTCAGCAGAGAGGCACAGAGGGGAACGGCAGCTCCTTGGGTCCCACAGGGCTG-----CTG-CCTGCTCCTTGGCGGGA--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203854105 322 + 204313951 ----TCGTCCAGAAACCCCCCGCCCCTTCCACTGGCCTTGACCTAC---------------------------------------------GCCAAGCT-GGGGTTGTTGTCTGG------------------------------------------------------------------------------------------CAGGGGCAGGCGGTCACCTC------CACACA----CAGGGCCACCCTCGCCGCCGCT--------CTCCCTGTTGGATTCTGCAGTGCTGAGGACGTCACGGTCCTGACCACTGCCCTGTATCTCGGGGACGTCGTGTGCTCGTGTTGG-TGTTCCTGTCTTTTTCAAGACTTAATCGGAAGGAAGGCAGAAGGTCAGAG-TCCACAGCAGAGAGGCACAGAGGGGAACGGCAGCGCCTTGGGGCCAGTGGGGCTG-----CTG-CCTGCTCCTTGGCGGGG--
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16013864 307 +  16417988 GGAGTTCTCCAGAAACCCTGCG-CCCTCCCACTGG-CTTGACCTTC---------------------------------------------GCCGAGCC-GGGGCTG----CTGG------------------------------------------------------------------------------------------CAGGGGT-GGCGGTCACCCC------CCCACA----CAGGGCCCCCCTCGCCGCCGCC--------CT-CTGGTTGGATTCTGCGGCGCTGAGGACGTCACGGTCCTGACCGCTGCCCTGTGTCTCGGGGACGTCGTGCGC---TGTCGG-TGTTCCTGTCTTCTTCAAGACTTACT-GGAAATTAGGTCGAAGGTCCGAG-TCCGCAGCAGGGAG---CAGAGGGGAAC--CAGCGCCCTGGGGCCAGC-GGGCTG-----CGG--CTGCTCCGTGGCGGGG--
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1       98061 324 +    298490 GGTGTTGTCCAGAAACCCTCCGCCCCTCCCACTGGCCTTGACCTTC---------------------------------------------GCCAAGCT--GGGCTGCTGGCTGG------------------------------------------------------------------------------------------CAGGGGC-GGCGGTCACCCC------CACACA----CAGGGCCACCCTCGCTGCTGCT--------CTCCCCGTTGGGTTCTGCAGTGCTGAGCACCTCACGGTCCTGACCGCCGCCCTGTATCTCGGGGACGTCACGTGCTCCTGTTGG-TGTTCCTGTGTTTTCCAAGACTCAATCGTAAATAAGGTCGAAGGTCCGAG-TCCGCAGCAGAGGAGCACAGAGGGGAACGGCAGCGCCTTGGGGACAGTGGGGCTG-----CTG-CCCGCTCCGTGGCCGGG--
i cebCap1.NW_016108158v1   I 58 I 1
s otoGar3.GL873745           1882574 306 -   2165740 TGTATTGACCCAAATCCCATTCTTCCTCC--TTGG---TGTCCTTG---------------------------------------------CCCACACAGGA-------------------------------------------------------------------------------------------------------CTGGGGCAGGCAATCACCTCCTTCATTGTCCAGCAGCAGCACATCCTCCTCTGTGGCTCCCTCCTGCTCCCCGTCCAAGTCTGCAG---CAGAGATTTTGCTGTCCTAAAC----CCTCACATTTCTGT------ATGTTCTCACGTTGG-----CCTTCTCTTTTGCAAACTTAATTGTTAA--GGATAGGCTGTTAGGA-ACTACACCAGAGAGAATCA---TGCTATGGCAGC-----AGGGTCTGCATAACTGGCAGGCTG-TGTGGGCCAGTGTGGGG-T
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e canFam3.chr34             11722830 1518 +  42124431 I

a score=1464124.000000
s hg38.chr5_KI270793v1_alt     69997 231 +    126136 CACTGGAGGCCCAGAGTGGCACAGACCCTGTCTTCACTGAGGGGAGAAAGAGGCAGCCCCGGGGCATGAGAGCCACCCCTGCTGATGCTGCCCCGGGCCCACAAGGGCCAAGCTCCAGGAACATGGAAGTCCTGCCCTGGGCAGCACAGCCTCCAGATTCCAAGAACCCAGCCTGGCACCCCAGGCTGGGCACAGCAAGGAGAGAGACTTCGACA--CTCTGCATTAAGATGG
s panTro5.chr5             181332654 231 - 181907262 CACTGGAGGCCCAGAGTGGCACAGACCCTGTCTTCACCGAGGGGAGAAAGAGGCAGCCCCGGGGCATGAGAGCCACCCCTGCTGATGCTGCCCCGGGCCCACAAGGGCCAAGCTCCAGGAACATGGAAGTCCTGCCCTGGGCAGCACAGCCTCCAGATTCCAAGAACCCAGCCTGGCACCCCAGGCTGGGCACAGCAAGGAGAGAGACTTCCACA--CTCTGCATTAAGATGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053251 231 - 183735486 CACTGGAGGCCCAGAGTGGCAGAGACCCTGTCTTCACCGAGGGGAGAAAGAGGCAGCCCCGGGGCATGAGAGCCACCCCTGCTGATGCTGCCCCGGGCCCACAAGGGCCAAGCTCCAGGAACATGGAAGTCCTGCCCTGGGCAGCACAGCCTCCAGATTCCAAGAACCCAGCCTGGCACCCCAGGCTGGGCACAGCAAGGAGAGAGACTTCGACA--CTCTGCATTAAGATGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      141864 231 +    698298 TACTGGAGGCCCAGAGTGGCACAGACCCTGTCTTCACCGAGGGGAGAAAGAGGTGGCCCCGGGGCATGAGAGCCAACCCTGCTGATGCTACCCTGGGCCCACAAGGGCCAAACTCCAGGAACATGGAAGTCCTGCCCTGGGCAGCACAGCCTCCAGATTCCAAGAACCCAGCCTGGCACCCCAGGCTGGGCACAGCAAGGAGAGAGACTTCGACA--CTCTTCATTAAGATGG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179527180 227 - 180051392 CGGCGGAGGCCCAGAGTGGCACAGACC--GCCTTTACCGAGGGCAGAAGGAGGCAGCCCCGGGGCGTGAGGGCCACCCCTGCTGATGCTACCCTGCGCCCAC-AGGGCCAAGCTCCAGAGACGTGGAAGTCCTGCCCT-GGCAGAGCAGCCTCCAGAGGCCAAGACCCCGGCCTGGCACCCCAGGCTGGGCACAGCGAGGAGAGAGACTTCGACA--CTCTGCATTAAGATGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260006 227 - 181584905 CGGCGGAGGCCCAGAGTGGCACAGACC--GCCTTTACCGAGGGCAGAAGGAGGCAGCCCCGGGGCGTGAGGGCCACCCCTGCTGATGCTACCCTGCGCCCAC-AGGGCCAAGCTCCAGAGATGTGGAAGTCCTGCCCT-GGCAGAGCAGCCTCCAGAGGCCAAGACCCCGGCCTGGCACCCCAGGCTGGGCACAGCGAGGAGAGAGACTTCGACA--CTCTGCATTAAGATGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261136 227 -   1764207 CGGCGGAGGCCCAGAGTGGCACAGACC--GCCTTTACCGAGGGCAGAAGGAGGCAGCCCCGGGGCGTGAGGGCCACCCCTGCTGATGCTACCCTGCGCCCAC-AGGGCCAAGCTCCAGAGACGTGGAAGTCCTGCCCT-GGCAGAGCAGCCTCCAGAGGCCAAGACCCCGGCCTGGCACCCCAGGTTGGGCACAGCGAGGAGAGAGACTTCGACA--CTCTGCATTAAGATGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      271797 227 -  16742782 CGGCGGAGGCCCAGAGTGGCACAGACC--GCCTTCACCGAGGGCAGAAGGAGGCAGCCCCGGGGCGTGAGGGCCACCCCTGCTGATGCTACCCCGCGCCCAC-AAGGCCAAGCTCCAGAGACATGGAAGTTCTGCCCT-GGCAGAGCAGCCTCCAGAGGCCAAGACCCCGGCATGGCACCCCAGGCTGGGCACAGCGAGGAGAGAGACTTTGACA--CTCTGCATTAAGATGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90575244 227 -  91010382 CGGCGGAGGCCCAGAGTGGCACAGACC--GCCTTCACCGAAGGCAGAAGGAGGCAGCCCCGGGGCGTGAGGGCCACCCCTGCTGATGCTACTCCGTGCCCAC-AGGGCCAAGCTCCAGAGACGTGGAAGTTCTGCCCT-GGCAGAGCAGCCTCCAGAGGCCAAGACCCCGGCCTGGCACCCCAGGCTGGGCACAGCGAGGAGAGAGACTTCGACA--CTCTGCATTAAGATGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170050 227 -    438239 CGGCGGAGGCCCAGAGTGGCACAGACC--GCCTTCACCGAGGGCAGAAGGAGGCAGCCCCGGGGCGTGAGGGCCACCCGTGCTGATGCTACCCTGCGCCCAC-AGGGCCAAGCTCCAGAGACGTGGAAGTTCTGCCCT-GGCAGAGCAGCCTCCAGAGGCCAAGACCCCGGCGTGGCACCCCAGGCTGGGCATAGTGAGGAGAGAGACTTTGACA--CTCTGCATTAAGATGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      198294 227 -    514179 CGGCGGAGGCCCAGAGTGGCACAGACC--GCCTTCACCGAGGGCAGAAGGAGGCAGCCCCGGGGCGTGAGGGCCACCCCCGCTGATGCTACCCCGCGCCCAC-AGGGCCAAGCTCCAGAGACATGGAAGTCCTGCCCT-GGCAGAGCAGCCTCCAGAGGCCAAGACCCCGGCCTGGCACCCCAGGCTGGGCACAGCGAGGAGAGAGACTTCGACA--CTCTGCATTAAGATGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203854428 215 + 204313951 CGCTGGAGGCCCAGAGTGGCTCAGGCCCCGTCTCCATTGAGAGGAGAAAGAGGCGG--CCAGAACACAAGGGCCACCCC-ACTGATGCT-------GCCCACACGGGACAAGCTGCAGGAACATGGAAGCACCCCCTG-GGCAGCACAGCCTCCAGCATCTAAGACCCCAGCCTGGCACCCCGGGCAGGCCACAGCGAG--AAGAGACTTCAACA--CT---CATTAAGATGG
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16014172 223 +  16417988 CGCCCGAGGCCCAGAGAGGCGCAGGCGCCGTCTCCACTGCGAGGAGACAGAGGCGG--CCAGGGCACGAGGGCCACCCC-GCTGAGGCCGCCCCGGGCCCACACGGGACAGGCTCCAGGGACATGGACGCGCCCCCTG-GGCAGCACAGCCTCCAGCGTCCAGGACCCCGGCCTGGCG-CCCGGGCAGGCCGCAGCGAG--GAGAGACTGCGACACTCT---CATTAAGGTGG
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1       98386 223 +    298490 CGCTGGAGGCCCAGAGTGGTGCAGGCCCCGTCTCCACAGAGAGGAGACAGAGGCGG--CCAGGGCATGAGGGCCACCCC-ACTGAAGCTGCCCCAGGCCCACAAGGGACAAGCTCCAGGGACATAGAAGCGCCCCTGG-GGCAGCACAGCCTCCAGC-TCCAAGACCCCGGCCTGGCACCCCGGGCAGGCCACAGCGAGAAGAGAGACTTCGACA--CT---CATTAAGATGG
i cebCap1.NW_016108158v1   I 1 C 0
s otoGar3.GL873745           1882880 178 -   2165740 CACTGCCTGTCCC------CAAAAACC--TCCCTCCCCATGA---------------CACAGTGTGAGAGGCCCAGCCCAGCCAATACTGTGACACACACAT----GATGAGCTCTACGGACACAGAAGTCCTGCATC--------------CCAGG-----------CAGCTTTGGTTGCTAGTCTGGCCATAGGGAG-AAAGACACTTCTAAA--TTCCTTAGTCAGATGG
i otoGar3.GL873745         C 0 I 92
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120571048 702 - 121039945 M

a score=45405.000000
s hg38.chr5_KI270793v1_alt     70228 6 +    126136 TAGCTC
s panTro5.chr5             181332885 6 - 181907262 TAGCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053482 6 - 183735486 TAGCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142095 6 +    698298 TAGCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179527407 6 - 180051392 TAGCTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260233 6 - 181584905 TAGCTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261363 6 -   1764207 TAGCTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272024 6 -  16742782 TAGCTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90575471 6 -  91010382 TAGCTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170277 6 -    438239 TAGCTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      198521 6 -    514179 TAGCTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203854643 6 + 204313951 TCGCTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014395 6 +  16417988 TCGCTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       98609 6 +    298490 TCGCTC
i cebCap1.NW_016108158v1   C 0 I 215
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e otoGar3.GL873745           1883058 92 -   2165740 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120571048 702 - 121039945 M

a score=13326.000000
s hg38.chr5_KI270793v1_alt     70234 2 +    126136 GT
s panTro5.chr5             181332891 2 - 181907262 GT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053488 2 - 183735486 GT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142101 2 +    698298 GT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179527413 2 - 180051392 GT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260239 2 - 181584905 GT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261369 2 -   1764207 GT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272030 2 -  16742782 GT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90575477 2 -  91010382 GT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170283 2 -    438239 GT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      198527 2 -    514179 GT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203854649 2 + 204313951 AT
i calJac3.chr2             C 0 I 467
s saiBol1.JH378155          16014401 2 +  16417988 GT
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e otoGar3.GL873745           1883058 92 -   2165740 I
e cebCap1.NW_016108158v1       98615 215 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120571048 702 - 121039945 M

a score=6600.000000
s hg38.chr5_KI270793v1_alt     70236 1 +    126136 g
s panTro5.chr5             181332893 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053490 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142103 1 +    698298 g
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179527415 1 - 180051392 g
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260241 1 - 181584905 g
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261371 1 -   1764207 g
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272032 1 -  16742782 g
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90575479 1 -  91010382 g
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170285 1 -    438239 g
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      198529 1 -    514179 g
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16014403 1 +  16417988 G
i saiBol1.JH378155         C 0 I 4
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e otoGar3.GL873745           1883058 92 -   2165740 I
e cebCap1.NW_016108158v1       98615 215 +    298490 I
e calJac3.chr2             203854651 467 + 204313951 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120571048 702 - 121039945 M

a score=763948.000000
s hg38.chr5_KI270793v1_alt     70237 177 +    126136 gcc-ggcgcggtggctcatccctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggaa-tcaagaccatctggttaacaccatgaaaccctgtctc--ttaaaaatat-gaaaacttagccgggcgtggtggcaggcgcctgtagtcccagctactggggggaggc
s panTro5.chr5             181332894 178 - 181907262 GTC-ggcgcggtggctcatccctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggaaatcaagaccatctggttaacaccatgaaaccctgtctc--ttaaaaatat-gaaaacttagccgggcatggtggcaggcgcctgtagtcccagctactggggggaggc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053491 178 - 183735486 GTC-ggcgcggtggctcatccctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggaaatcaagaccatctggttaacaccatgaaaccctgtctc--ttaaaaatat-gaaaacttagccgggcatggtggcaggcgcctgtagtcccagctactggggggaggc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142104 177 +    698298 gcc-ggcgcggtggctcatccctgtaatcccagcactttgggaggccgaggcgggtggatcacgaggtcaggaaatcaagaccatctggttaacaccatgaaaccctgtctc--ttaaaaatat-gaaaacttagccgggcgtggtggcaggcgcctgtagtcccagctact-gggggaggc
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179527416 179 - 180051392 gctgggcacggtggctcatgcctgtaatcccagcacttttggaggccgaggcaggcagatcacgaggtcaggaaattaagatcatctggttaacatggtgaaaccccgtctctattaaaaatac-aaaaaactagccgggcgtggtggcaggcgcctgtagtcctagctact--caggaggc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260242 180 - 181584905 gccgggcacggtggctcatgcctgtaatcccagcacttttggaggccgaggcaggcagatcacgaggtcaggaaattaagatcatctggttaacacggtgaaaccccatctctattaaaaatacaaaaaaattagccgggcgtggtggcaggcgcctgtagtcccagctact--caggaggc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261372 179 -   1764207 gccgggcacggtggctcatgcctgtaatcccagcacttttggaggccgaggcaggcagatcacgaggtcaggaaattaagatcatctggttaacatggtgaaaccccgtctctattaaaaatac-aaaaaattagccaggcgtggtggcgggcacctgtagtcctagctact--cggtaggc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272033 179 -  16742782 gctgggcacggtggctcatgcctgtaatcccagcatttttggaggctgaggcaggcagatcacgaagtcaggaaattaagaccatctggttaacatggtgaaaccccgtctctcttaaaaatac-aaaaaattagccaggcatggtggcgggcgcctgtagtcctagctact--ccgtaggc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90575480 179 -  91010382 gctgggcacggtggctcatgcctgtaatcccagcacttttggaggccgagggaggcagatcacgaggtcaggaaattaagaccatctggttaacacggtgaaaccccatctctattaaagatac-aaaaaattagccaggcatggtggcgggcacctgtagtcccagctact--cggtaggc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170286 179 -    438239 gctgggcacggtggctcatgcctgtaatcccagcatttttggaggccgaggcaggcagatcacgaagtcaggaaattaagaccatctggttaacatggtgaaaccccgtctctcttaaaaatac-aaaaaattagccaggcatggtggcgggcgcctgtagtcctagctact--ccgtaggc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      198530 179 -    514179 gctgggcacggtggctcatgcccgtaatcccagcacttttggaggccgaggcaggcagatcacgaggtcaggaaattaagaccatctggttaacatggtgaaaccctgtctctattaaaaatac-aaaaaattagccaggcgtggtggcgggcgcctgtagtcctagctact--cggtaggc
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e otoGar3.GL873745           1883058  92 -   2165740 I
e cebCap1.NW_016108158v1       98615 215 +    298490 I
e saiBol1.JH378155          16014404   4 +  16417988 I
e calJac3.chr2             203854651 467 + 204313951 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120571048 702 - 121039945 M

a score=494862.000000
s hg38.chr5_KI270793v1_alt     70414 127 +    126136 cgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagatcacatcactgcactccagcctgcgccacagagcaaaactccgtcac-------acaca--------cacaaaaaaaTGGTAGCTCCTG
s panTro5.chr5             181333072 128 - 181907262 cgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcacgtcactgcactccagcctgcgcgacagagccaaactccgtcac-------aaaaa-------acaaaaaaaaaTGGTAGCTCCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053669 129 - 183735486 cgaggcaggagaatggcgtgaacccgggaggcagagcttgcagtgagccgagatcacgtcactgcactccagcctgcgcgacagagccaaactccgtcac-------acaca------cacacaaaaaaaTGGTAGCTCCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142281 132 +    698298 cgaggcaggagaatggcgtgaaccc-ggaggcggagcttgcagtgagccgagatcaggtcactgcactccagcctgcgcgacagagcaaaactccgtcac-------aaaaaata--aaaaataaaataaTGGTAGCTCCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179527595 134 - 180051392 tgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagcgagactccgtctc------aaaaagaaa--aaaagaaaaaagaTGGTAGCTCGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260422 134 - 181584905 tgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgtgccactacactccagcctgggcgacagagcgagactccgtctc------aaaaagaaa--aaaagaaaaaagaTGGTAGCTCGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261551 138 -   1764207 tgaggcaggagaatggtgtgaacccaggaggcggagctttcagtgagccgagatggtgccactgcactccagcctgggcggcagagcgagactccatctc--aaaaaaaaaaaaa--aaaagaaaaaagaTGGTAGCTCGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272212 133 -  16742782 tgaggcaggagaatggtgtgaacccaggaggcggagctttcagtgagccgagatggtgccactacactccagcctgggcgacagagcgagactccatctc-------aaaaaaaa--aaaagaaaaaagaTGGTAGCTCGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90575659 132 -  91010382 tgaggcaggagaatggtgtgaacccaggaagcggagctttcagtgagccgagatcgcgccactgtactccagcctgggtgacagagcgagactccatctc--------aaaaaaa--aaaagaaaaaagaTGGTAGCTGGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170465 133 -    438239 tgaggcaggagaatggtgtgaacccaggaggcggagctttcagtgagccgagatggtgccactacactccagcctgggcgacagagcgagactccatctc-------aaaaaaaa--aaaagaaaaaagaTGGTAGTTCGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      198709 129 -    514179 tgaggcaggagaatggtgtgaacccaggaggcggagctttcagtgagccgagatagcgccactacactccagcctgggcgacagagcgagactccatccccccccccaa-------------aaaaaagaTGGTAGCTCGTG
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1883150 119 -   2165740 TGAGGCAGTAAA------TGGAGCC----GGTGGAAGTGCCCACGCACCCTGACTGCCTCTCTGTCCTCCAGTGTGGCCAGTATGTCCAGTGGCCATCAC-------ATGGCTTACTGTGCTAGCAGAAGTGGTTG------
i otoGar3.GL873745         I 92 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e cebCap1.NW_016108158v1       98615 215 +    298490 I
e saiBol1.JH378155          16014404   4 +  16417988 I
e calJac3.chr2             203854651 467 + 204313951 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120571048 702 - 121039945 M

a score=31860.000000
s hg38.chr5_KI270793v1_alt     70541 6 +    126136 --AGCCAA
s panTro5.chr5             181333200 6 - 181907262 --AGCCAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053798 6 - 183735486 --AGCCAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142413 6 +    698298 --AGCCAA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179527729 6 - 180051392 --AGCCGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260556 6 - 181584905 --AGCCGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261689 6 -   1764207 --AGCCGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272345 6 -  16742782 --AGCCGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90575791 6 -  91010382 --AGCCGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170598 6 -    438239 --AGCCGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      198838 6 -    514179 --AGCCGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855118 6 + 204313951 --AGCCCA
i calJac3.chr2             I 467 C 0
s otoGar3.GL873745           1883269 8 -   2165740 AGCACCAG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e cebCap1.NW_016108158v1       98615 215 +    298490 I
e saiBol1.JH378155          16014404 4 +  16417988 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120571048 702 - 121039945 M

a score=10218.000000
s hg38.chr5_KI270793v1_alt     70547 2 +    126136 -CA
s panTro5.chr5             181333206 2 - 181907262 -CA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053804 2 - 183735486 -CA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142419 2 +    698298 -CA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179527735 2 - 180051392 -CA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260562 2 - 181584905 -CA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261695 2 -   1764207 -CA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272351 2 -  16742782 -CA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90575797 2 -  91010382 -CA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170604 2 -    438239 -CA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      198844 2 -    514179 -CA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855124 2 + 204313951 -CA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014408 2 +  16417988 -CA
i saiBol1.JH378155         I 4 C 0
s otoGar3.GL873745           1883277 2 -   2165740 CC-
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e cebCap1.NW_016108158v1       98615 215 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120571048 702 - 121039945 M

a score=360066.000000
s hg38.chr5_KI270793v1_alt     70549 55 +    126136 CTTTTCCGCTCCCC-CACCC------GCTGCGTCTCAGCATTCCTTAGGCTCTCCCCTTGGG
s panTro5.chr5             181333208 55 - 181907262 CTTTTCCGCTCCCC-CACCC------GCTGCGTCTCAGCATTCCTTAGGCTCTCCCCTTGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053806 55 - 183735486 CTTTTCCGCTCCCC-CACCC------GCTGCGTCTCAGCATTCCTTAGGCTCTCCCCTTGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142421 54 +    698298 CTTTTCTCCT-CCC-CACCC------GCTGTGTCTCAGCATTCCTTAGGCTCTCCCCTTGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120571773 55 - 121039945 CTTTTCCGCTCCCC-CACCC------GCTGCCTCTCAGCATTCCTTAGGCTCTCCCCTTGGG
i nomLeu3.chr6             M 702 I 2
s rheMac8.chr6             179527737 62 - 180051392 CTTTTCCGCTCCCCTCACCCGCCTGTGCTGCGTCTCAGCATTCCTTAGGCTCTCCCCTCGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260564 62 - 181584905 CTTTTCCGCTCCCCTCACCCGCCTGTGCTGCGTCTCAGCATTCCTTAGGCTCTCCCCTCGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261697 62 -   1764207 CTTTTCCGCTCCCCTCACCCGCCTGTGCTGCGTCTCAGCATTCCTTAGGCTCTCCCCTCGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272353 62 -  16742782 CTTTTCCACTCCCCTCACCCGCCTGTGCTGCGTCTCAGCATTCTTTAGGCTCTCCCCTAGGG
i cerAty1.NW_012009470v1   C 0 I 34
s chlSab2.chr4              90575799 62 -  91010382 CTTTTCCGCTCCCCTCACCCACCTGTGCTGCGTCTCAGCATTCCTTAGGCTCTCCCCTCGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170606 62 -    438239 CTTTTCCGCTCCCCTCACCCGCCTGTGCTGCGTCTCAGCATTCCTTAGGCTCTCCCCTCGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      198846 62 -    514179 CTTTTCCGCTCCCCTCACCCGCCTGTGCTGCGTCTCAGCATTCCTTAGGCTCGCCCTCCAGG
i colAng1.NW_012118799v1   C 0 I 34
s calJac3.chr2             203855126 60 + 204313951 -CGTTCCCCTCTCCCCACCCACCTG-TCTGCGTCTCAGCATTCCTTAGGCTGTCCTACTGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014410 60 +  16417988 -CGTTCCCCTCTCCCCGCCCGCCTG-TCTGCGTCTCAGCATTTCTTAGGCTGCACCCCTGGG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1883279 29 -   2165740 CCATCCTGGTTCCC----------------CGTCTCAG---TCCTGTG--------------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e cebCap1.NW_016108158v1       98615 215 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I

a score=63114.000000
s hg38.chr5_KI270793v1_alt     70604 27 +    126136 AGACTCACATGTATGGGGCGGGGGAGC
s panTro5.chr5             181333263 27 - 181907262 AGAGTCACATGTATGGGGTGGGGGAGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053861 27 - 183735486 AGAGTCACATGTATGGGGTGGGGGAGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142475 25 +    698298 AGACTCACATGTATGGGGCGGGGAG--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120571830 25 - 121039945 ATACTCACATGTATGGGGCGGAGTG--
i nomLeu3.chr6             I 2 C 0
s rheMac8.chr6             179527799 27 - 180051392 GGACTCACATGTCCAGGGTGTAGAAAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260626 27 - 181584905 GGACTCACATGTCCAGGGTGTAGAAAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261759 27 -   1764207 GGACTCACATGTCCAGGGTGTAGAAAC
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90575861 27 -  91010382 GGACTCACATGTCCAGGCTGTAGAAAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170668 27 -    438239 GGACTCACATGTCCAGGGTGTAGAAAC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203855186 23 + 204313951 GGACTCACATGTACCAGGCGGGT----
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014470 22 +  16417988 GGACTCACGTGTACCAGG-GGGG----
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1883308  8 -   2165740 GGACCAGC-------------------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e cebCap1.NW_016108158v1       98615 215 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I
e cerAty1.NW_012009470v1      272415 34 -  16742782 I
e colAng1.NW_012118799v1      198908 34 -    514179 I

a score=5994.000000
s hg38.chr5_KI270793v1_alt     70631 11 +    126136 GGGGGTTTCCT
s panTro5.chr5             181333290 11 - 181907262 GGGGGTTTCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053888 11 - 183735486 GGGGGTTTCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142500 11 +    698298 GGGGGTTTCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120571855 11 - 121039945 GGGGGTTTCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179527826  4 - 180051392 A-------CCT
i rheMac8.chr6             C 0 I 4
s macFas5.chr6             181260653  4 - 181584905 A-------CCT
i macFas5.chr6             C 0 I 4
s macNem1.NW_012012389v1      261786  4 -   1764207 A-------CCT
i macNem1.NW_012012389v1   C 0 I 4
s chlSab2.chr4              90575888  4 -  91010382 A-------CCT
i chlSab2.chr4             C 0 I 4
s manLeu1.NW_012110441v1      170695  4 -    438239 A-------CCT
i manLeu1.NW_012110441v1   C 0 I 4
s calJac3.chr2             203855209  4 + 204313951 -------TTCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014492  4 +  16417988 -------TTCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       98830 11 +    298490 GGGGGGTTTCT
i cebCap1.NW_016108158v1   I 215 C 0
s otoGar3.GL873745           1883316  3 -   2165740 --------CCT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e canFam3.chr34             11722830 1518 +  42124431 I
e cerAty1.NW_012009470v1      272415 34 -  16742782 I
e colAng1.NW_012118799v1      198908 34 -    514179 I

a score=983652.000000
s hg38.chr5_KI270793v1_alt     70642 124 +    126136 AGGCCCTGACTC-AGCTAGAGCGTCTGGCTGACCCGTCATTGTCCAGGGAAG-----CCATGGATCTGGTGGCCGCAGCCCAGCGCCGTCCTCAC---------CACCCAGGCCTGCCTGGAGCCCAGTGGCTGTCAGG
s panTro5.chr5             181333301 124 - 181907262 AGGCCCTGACTC-AGCCAGAGCGTCTGGATGACCCGTCATTGTCCAGGGAAG-----CCATGGATCTGGTGGCCGCAGCCCAGCACCGTCCTCAC---------CACCCAGGCCTGCCTGGAGCCCAGTGGCTGTCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183053899 124 - 183735486 AGGCCCTGACTC-AGCCAGAGCGTCTGGATGACCCGTCATTGTCCAGGGAAG-----CCATGGATCTGGTGGCCGCAGCCCAGCACCGTCCTCAC---------CACCCAGTCCTGCCTGGAGCCCAGTGGCTGTCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142511 124 +    698298 AGGCCCTGACTC-AGCCAGAGCATCTGGCTGACCCGTCATTGTCCAGGGAAG-----CCATGGATCTGGTGGCCGCAGTCCAGCGCCGTTCTCAC---------CACCCAGGCCTGCCTGGAGCCCAGTGGCTGTCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120571866 124 - 121039945 AGGCCCTGATTC-ATTCAGAGCATCTGGCTGACCCGTCATCCTCCAGGGAAG-----CCATGGATCTGGTGgccgcagcccagccccgtcctcac---------cacccaggcctgcctggagcccagtggctgtcagg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179527834 124 - 180051392 AGGCCCTGACTC-AGCCAGAGTGTCCGGCTGACCCGTCATCTTCCAGGGAAG-----CCGTGGATCTGGTGGCTGCAGCCCAGCCCCGTCCTCAC---------CATCCAGGCCTGCCTGGAACCCAGTGGCTGTCAGG
i rheMac8.chr6             I 4 C 0
s macFas5.chr6             181260661 124 - 181584905 AGGCCCTGACTC-AGCCAGAATGTCCGGCTGACCCGTCATCTTCCAGGGAAG-----CCGTGGATCTGGTGGCTGCAGCCCAGCCCCGTCCTCAC---------CATCCAGGCCTGCCTGGAACCCAGTGGCTGTCAGG
i macFas5.chr6             I 4 C 0
s macNem1.NW_012012389v1      261794 124 -   1764207 AGGCCCTGACTC-AGCCAGAGTGTCCGGCTGACCCGTCATCTTCCAGGGAAG-----CCGTGGATCTGGTGGCTGCAGCCCAGCCCCGTCCTCAC---------CGTCCAGGCCTGCCTGGAACCCAGTGGCTGTCAGG
i macNem1.NW_012012389v1   I 4 C 0
s cerAty1.NW_012009470v1      272449 124 -  16742782 AGGCCCTGACTC-AGCCAGAGTGTCCGGCTGACCCGTCATCTTCCAGGGAAG-----CCGTGGATCTGGTGGCCGCAGCCCAGCCCCGTCCTCAC---------CATCCAGGCCTGTCTGGAACCCAGTGGCTGTCAGG
i cerAty1.NW_012009470v1   I 34 C 0
s chlSab2.chr4              90575896 124 -  91010382 AGGCCCTGACTC-AGCCAGAGTGTCCGGCTGACCCGTCATCTTCCAGGGAAG-----CCGTGGATCTGGTGGCCGCAGCCCAGCCCTGTCCTCAC---------CATCCAGGCCTGCCTGGAACCCAGTGGCTGTCAGG
i chlSab2.chr4             I 4 C 0
s manLeu1.NW_012110441v1      170703 124 -    438239 AGGCCCTGACTC-AGCCGGAGTGTCCGGCTGACCCGTCATCTTCCAGGGAAG-----CCGTGGATCTGGTGGCCGCAGCCCAGCCCCGTCCTCAC---------CATCCAGGCCTGCCTGGAACCCAGTGGCTGTCAGG
i manLeu1.NW_012110441v1   I 4 C 0
s colAng1.NW_012118799v1      198942 124 -    514179 AGGCCCTGACTC-AACCAGAGCATCCGGCTGAGCTGTCATCTTCCAGGGAAG-----CCGTGGATCTGGTGGCTGCAGCCCAGCCCCATCCTCAC---------CATCCCGGCCTGCCTGGAACCCAGTGGCTGTCAGG
i colAng1.NW_012118799v1   I 34 C 0
s calJac3.chr2             203855213 125 + 204313951 AGGCCCTGACTCAAGCCAAAGCGTCCAGCTGACTCCTCATCCTGCAGGGAAG-----GCATGGATCTGGGGTCCACAGCCCAGCCCCGTCCTAAC---------CGCCCAGGCCTGCCTGGGACGTGATGGCTGTCAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014496 102 +  16417988 AGGCC-----------------------CTGACTCCTCAGCCTGCAGGGAAG-----GCAGGGATCTGGAGTCCACGGCCCAGCCCCATCCTCAC---------CGGCCAGGCCTGCCTGGAACGCGATGGCCGTCAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       98841 124 +    298490 AGGCCCTGACTC-AGCGGGAGTGTCCCACTGACTCCTCATCCTGCAGGGAAG-----GCATGGATCTGCAGCCCACAGCCCAGCCCCATCCTAAC---------CGCCCAGGCCTGCCTGGAACGCGATGGCTGTCAGG
i cebCap1.NW_016108158v1   C 0 I 76
s otoGar3.GL873745           1883319 122 -   2165740 -----AGGACCC-AGTGA-------CAGCTGAGCTGGCCTAGACTAGGGAAGTACCATTGTGGGCCAAGGTGCTGCA--CCTGCCCTGGCCTCTCCTAGACTTTCACCCATGTTGATCTGGAGATCCTGGCCTGTGA--
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e canFam3.chr34             11722830 1518 +  42124431 I

a score=474013.000000
s hg38.chr5_KI270793v1_alt     70766 78 +    126136 GCAGCCGAGACCAGAAGCGCAGGTGGAGCCAAGGCCCCGCTGCAGTCCGCAGAGTTGCAACTCTGGGAGCTGAGCCCT
s panTro5.chr5             181333425 78 - 181907262 GCAGCCGAGACCAGAAGCGCAGGTGGAGCCAAGGCCCCGCTGCAGTCCGCAGAGTTGCAACTCTGGGAGCTGAGCCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054023 78 - 183735486 GCAGCCGGGACCAGAAGCGCAGGTGGAGCCAAGGCCCCGCTGCAGTCCGCAGAGTTGCAACTCTGGGAGCTGAGCCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142635 78 +    698298 GCAGCCGAGACCAGAAGCGCAGGTGGAGCCAAGGCCCCGCTGCAGTCCGCAGAGTTGCAACTCTGGGAGCTGAGCCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120571990 78 - 121039945 ccagccgaggccagAAGCGCATGTGGAGCCAAGGCCCCTCTGCAGTCCGCAGAGTTGCAACTCTGGGAGCTGAGCCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179527958 78 - 180051392 CCAGCCGAGACCAGAAGCACATGTGGATCCAAGGCCCCGCTGCAGTCTGCAGAGTTGCAGCTCTGGGCGCTGAGCCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260785 78 - 181584905 CCAGCCGAGACCAGAAGCACATGTGGATCCAAGGCCCCGCTGCAGTCTGCAGAGTTGCAGCTCTGGGCGCTGAGCCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261918 78 -   1764207 CCAGCCGAGACCAGAAGCACATGTGGATCCAAGGCCCCGCTGCAGTCTGCAGAGTTGCAGCTCTGGGCGCTGAGCCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272573 78 -  16742782 CCAGCCGAGACCAGAAGCACATGTGGATCCAAGGCCCCGCTGCAGTCTGCAGAGTTGCAGCTCTGGGCGCTGAGCCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576020 78 -  91010382 CCAGCCGAGACCAGAAGCACATGCGGATCCAAGGCCCCACTGCAGTCTGCAGAGTTGCAGCTCTGGGCACTGAGCCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170827 78 -    438239 CCAGCCGAGACCAGAAGCACATGTGGATCCAAGGCCCCGCTGCAGTCTGCAGAGTTGCAGCTCTGGGCGCTGAGCCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199066 78 -    514179 CCAGCCGAGACCAGAAGCACATGTGGATCCAAGGCCCCGCTGCAGTCTGCGGAGTTGCAGCTCTGGGTGCTGAGTCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855338 77 + 204313951 CCCCCGGAGAGCAGGAGCACATGTCCAGCCAGGGCCCTGCTGTAG-CTGCAGAAGTGGAGCTCCAGGCGGCGAGACAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014598 76 +  16417988 CCCCCGGAGAGCAGGCGCACGCGTCCAGCCGGGGCCCTGCTGCAG-CCGC-GGGGTGGAACTCCAGGCGCTGAGACCG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1883441  1 -   2165740 -------------------------------------------------------------T----------------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e cebCap1.NW_016108158v1       98965 76 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I

a score=743620.000000
s hg38.chr5_KI270793v1_alt     70844 91 +    126136 CACAAGCCTTGCTTTTCACCTCCTCCCAGTGCTACCAGCCAGACCCCGAGGGCCCGGGACCCTCCATGTACCCA-TCCACACTTCTCGGCCC
s panTro5.chr5             181333503 91 - 181907262 CACAAGCCTTGCTTTTCACCTCCTCCCAGTGCTACCAGCCAGACCCCGAGGGCCCGGGACCCTCCATGTACCCA-TCCACACTTCTCGGCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054101 91 - 183735486 CACAAGCCTTGCTTTTCACCTCCTCCCAGTGCTACCAGCCAGACCCCGAGGGCCCGGGACCCTCCATGTACCCA-TCCACACTTCTCGGCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142713 89 +    698298 CACAAGCCTTGCTTTTCACCTC--CCCAGTGCTACCAGCCAGACCCCGAGGGCCCGGGACCCTCCATGTACCCA-TCCCCACCTCTCGGCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572068 91 - 121039945 CACAAGCCTTGCTTGTCACCTCCTCCCAGTGCTACCAGCCAGACCCCGAGGGCCCAGGACCCTCCATGTACCCA-TCCCCACCTTTCGGCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528036 91 - 180051392 CACAAGCCTTGCTTGTCACCTCCTCCCAGTGCTACCAGCCAGACCCCAAGGGCCCAGGACCCTCCGTGTACCCA-TCCCCACATCTCGGCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260863 91 - 181584905 CACAAGCCTTGCTTGTCACCTCCTCCCAGTGCTACCAGCCAGACCCCAAGGGCCCAGGACCCTCCGTGTACCCA-CCCCCACCTCTCGGCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      261996 91 -   1764207 CACAAGCCTTGCTTGTCACCTCCTCCCAGTGCTACCAGCCAGACCCCAAGGGCCCAGGACCCTCCGTGTACCCA-TCCCCACCTCTCGACCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272651 91 -  16742782 CACAAGCCTTGCTTGTCACCTTCTCCCAGTGCTACCAGCCAGACCCCAAGGGCCCAGGACCCTCTGTGTACCCA-TCCCCACCTCTCGGCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576098 91 -  91010382 CACAAGCCTTGCTTGTCACCTCCTCCCAGTGCTACCAGCCAGACCCCAAGGGCCCAGGACCCTCCGTGTACCCA-TCCCCACCTCTCAGCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170905 91 -    438239 CACAAGCCTTGCTTGTCACCTCCTCCCAGTGCTACCAGCCAGACCCCAAGGGCCCAGGACCCTCCGTGTACCCA-TCCCCACCTCTCGGCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199144 91 -    514179 CACAAGCCTTGCTTGTCACCTCTTCCCAGTGCTACCAGCCAGACCCCGAGAGCCCCGGACCCTCCGTGTACCCA-TCCCCACCTCTCGGCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855415 91 + 204313951 CATAAGCCTTGCTTGTCACTTCCCCCCAGTGCCACCCGCCACA-CCCGAGGGCCCAGCACCCTCCGTGTACTCGGCCCCCAACTCTTGATCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014674 91 +  16417988 CACGAGCCCTGCTTGTCACTTCTCCCCAGTGCCACCCGCCACA-CCCGAGGGCCCAGCACCCTCCGTGTAGTCGGCCCCCGACTCTTGACCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       99041 91 +    298490 CACAAGCCTTGCTTGTCACTTCCCCCCAGTGCCACCCACCACA-CCCGAGGGCCCAGCACCCTCCGTGTACTCAGCCCCCAACTCTTGACCC
i cebCap1.NW_016108158v1   I 76 C 0
s otoGar3.GL873745           1883442 60 -   2165740 CACA---------------CCCCATTCAGGTCTACCAGACAAA----------------CCCTCTCTCCACTGT-ACCCCATATCTCAGCTG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25427758 244 -  25620257 I
e canFam3.chr34             11722830 1518 +  42124431 I

a score=412093.000000
s hg38.chr5_KI270793v1_alt     70935 43 +    126136 --ACCCCTCCCTGACAGCCCCGGCACCCCGGGAGGGAGCAGGTGC
s panTro5.chr5             181333594 43 - 181907262 --ACCCCTCCCTGACAGCCCCGGCACCCCGGGAGGGAGCAGGTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054192 43 - 183735486 --ACCCCTCCCTGACAGCCCCGGCACCCCGGGAGGGAGCAGGTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142802 43 +    698298 --ACCCCTCCCTGACAGCCCCGGCACCCCGGGAGGGAGCAGGTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572159 43 - 121039945 --ACCCCTCCCTGACAGCCCCGGCACCCCCGGAGGGAGAAGGTGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528127 43 - 180051392 --ACCCCTCCCTGGCAGTCCCAGCACCCCGGATGGAAGAAGGTGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181260954 43 - 181584905 --ACCCCTCCCTGGCAGTCCCAGCACCCCGGGTGGAAGAAGGTGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262087 43 -   1764207 --ACCCCTCCCTGGCAGTCCCAGCACCCCGGGTGGAAGAAGGTGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272742 43 -  16742782 --ACCCCTCCCTGGCAGTCCCAGCACCCCGGGTGGAAGAAGGTGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576189 43 -  91010382 --ACCCCTCCCTGGCAGTCCCAGCACCCCGGGTGGAAGAAGGTGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      170996 43 -    438239 --ACCCCTCCCTGGCAGTCCCAGCACCCCGGGTGGAAGAAGGTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199235 43 -    514179 --ACCCCTCCCTGGCAGCCCCAGCACCCCAGGTGGAAGAAGGTGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855506 43 + 204313951 --ACCCCTCCCCGGCAGCCCAGGCACCCCTGGAGGCAGAAGGTGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014765 43 +  16417988 --ACCGCTGCCCCGCAGCCCAGGCACCCCTGGAGGGAGAAGGTGT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       99132 43 +    298490 --ACCCCTCCCCGGCAGCCCAGGCACCCCTGGAGGGAGAAGGTGC
i cebCap1.NW_016108158v1   C 0 I 66
s aotNan1.NW_018503740v1    25428002 43 -  25620257 --ACCCCTCCCCGGCAGCCGAGGCACCCCTGGAGGGAGAAGGTGC
i aotNan1.NW_018503740v1   I 244 C 0
s otoGar3.GL873745           1883502 43 -   2165740 AGCCCCCTTCCTGGT-GCCCACACACACCTG-AGAAAGCAGATCC
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11722830 1518 +  42124431 I

a score=34539.000000
s hg38.chr5_KI270793v1_alt     70978 5 +    126136 GTCCC
s panTro5.chr5             181333637 5 - 181907262 GTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054235 5 - 183735486 GTCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142845 5 +    698298 GTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572202 5 - 121039945 GTCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528170 5 - 180051392 ACCCT
i rheMac8.chr6             C 0 I 7
s macFas5.chr6             181260997 5 - 181584905 ACCCT
i macFas5.chr6             C 0 I 7
s macNem1.NW_012012389v1      262130 5 -   1764207 ACCCT
i macNem1.NW_012012389v1   C 0 I 7
s cerAty1.NW_012009470v1      272785 5 -  16742782 ACCCT
i cerAty1.NW_012009470v1   C 0 I 7
s chlSab2.chr4              90576232 5 -  91010382 ACCCT
i chlSab2.chr4             C 0 I 7
s manLeu1.NW_012110441v1      171039 5 -    438239 ACCCT
i manLeu1.NW_012110441v1   C 0 I 7
s colAng1.NW_012118799v1      199278 5 -    514179 ATCCT
i colAng1.NW_012118799v1   C 0 I 7
s calJac3.chr2             203855549 5 + 204313951 ACCCC
i calJac3.chr2             C 0 I 8
s saiBol1.JH378155          16014808 5 +  16417988 GCCCC
i saiBol1.JH378155         C 0 I 8
s aotNan1.NW_018503740v1    25428045 5 -  25620257 GCCCC
i aotNan1.NW_018503740v1   C 0 I 57
s otoGar3.GL873745           1883545 5 -   2165740 ATCCC
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       99175 66 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I

a score=250277.000000
s hg38.chr5_KI270793v1_alt     70983 89 +    126136 ----------GCTTCGGGCCC-TCTGAACCCCCTCCATTTCGGGCTGTTTCAGACTTCGGCCTCTCTGAAGCTCCTCCATTTCTGGCTGCTT--TTCACTGC
s panTro5.chr5             181333642 89 - 181907262 ----------GCTTCGGGCCC-TCTGAACCCCCTCCATTTCTGGCTGTTTCAGACTTCGGCCCCTCTGAAGCTCCTCCATTTCTGGCTGCTT--TTTACTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054240 89 - 183735486 ----------GCTTCGGGCCC-TCTGAACCCCCTCCATTTCTGGCTGTTTCAGATTTCGGCCCCTCTGAAGCTCCTCCATTTCTGGCTGCTT--TTTACTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142850 88 +    698298 ----------GCTTCGGCCCC-TCTGAA-CCCCTCCATTTCTGGCTGTTTCAGGCTTCAGCCCCTCTGAAGCTCCTCCATTTCTGGCTGCTT--TTCACTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572207 47 - 121039945 ----------ACTTCGGCCCC-TCTGAACCC------------------------------------------CCTCCATTTCTGGCTGCTT--TTCACTGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528182 48 - 180051392 ----------GCTTCGGCCCC-TCCGAACCCC-----------------------------------------CGTCCATTTCTGGCTGTTT--TTCACTGC
i rheMac8.chr6             I 7 C 0
s macFas5.chr6             181261009 47 - 181584905 ----------GCTTCGGCCCC-T-CGAACCCC-----------------------------------------CGTCCATTTCTGGCTGTTT--TTCACTGC
i macFas5.chr6             I 7 C 0
s macNem1.NW_012012389v1      262142 48 -   1764207 ----------GCTTCGGCCCC-TCCGAACCCC-----------------------------------------CGTCCATTTCTGGCTGTTT--TTCACTGC
i macNem1.NW_012012389v1   I 7 C 0
s cerAty1.NW_012009470v1      272797 48 -  16742782 ----------GCTTCGGCCCC-TCCGAACCCC-----------------------------------------CTTCCATTTCTGGCTGTGT--TTCACTGC
i cerAty1.NW_012009470v1   I 7 C 0
s chlSab2.chr4              90576244 47 -  91010382 ----------GCTTCGGCCCC-TCCGAACCCC-----------------------------------------CATCCATTTCTGGCTGTGT--TTCA-TGC
i chlSab2.chr4             I 7 C 0
s manLeu1.NW_012110441v1      171051 48 -    438239 ----------GCTTCGGCCCC-TCCGAACCCC-----------------------------------------CGTCCATTTCTGGCTGTGT--TTCACTGC
i manLeu1.NW_012110441v1   I 7 C 0
s colAng1.NW_012118799v1      199290 48 -    514179 ----------GCTTCGGCCCC-TCCGAACCCC-----------------------------------------CGTCCATTTCTGGCTGTTT--TTCACTGC
i colAng1.NW_012118799v1   I 7 C 0
s calJac3.chr2             203855562 49 + 204313951 ----------GGTAGGAGCCCCTCCGAACCCC-----------------------------------------GCTCCCCTTCTGCGTGTTT--TTGGCTGA
i calJac3.chr2             I 8 I 1
s saiBol1.JH378155          16014821 47 +  16417988 ----------GCTAGGGGCCC--CCGAACCCC-----------------------------------------GCTCCACCTCTGGGTGTTT--TTGGCTGC
i saiBol1.JH378155         I 8 I 1
s otoGar3.GL873745           1883550 63 -   2165740 GCAGTGGGTAGCT--GCTCCC-TCCAGATTCTTTTCA------------------------------------TTTCTCTTTTTGGCTGTTTTGTTCACTGC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25428050 57 -  25620257 I
e cebCap1.NW_016108158v1       99175 66 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I

a score=31439.000000
s hg38.chr5_KI270793v1_alt     71072 5 +    126136 -CGTCT
s panTro5.chr5             181333731 5 - 181907262 -CGTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054329 5 - 183735486 -CGTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142938 5 +    698298 -CGTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572254 5 - 121039945 -CGTCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528230 5 - 180051392 -CGTCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261056 5 - 181584905 -CGTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262190 5 -   1764207 -CCTCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272845 5 -  16742782 -CGTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576291 5 -  91010382 -CGTCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      171099 5 -    438239 -CGTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199338 5 -    514179 -CGTCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855612 5 + 204313951 -TATCC
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16014869 5 +  16417988 -CGTCC
i saiBol1.JH378155         I 1 C 0
s aotNan1.NW_018503740v1    25428107 5 -  25620257 -CGTCC
i aotNan1.NW_018503740v1   I 57 C 0
s otoGar3.GL873745           1883613 4 -   2165740 AAAT--
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       99175 66 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I

a score=370331.000000
s hg38.chr5_KI270793v1_alt     71077 43 +    126136 GCCTGCCTGTGTTCTTGTCTTCACGCC-GGCCTTTGGTACGGGA
s panTro5.chr5             181333736 43 - 181907262 GCCTGCCTGTGTTCTTGTCTTCACGCC-GGCATTTGGTACAGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054334 43 - 183735486 GCCTGCCTGTGTTCTTGTCTTCACGCC-GGCATTTGGTACAGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142943 43 +    698298 GCCTGCCTGTGTTCTTGTCTTCACGCC-GGCCTTTGGTACGGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572259 43 - 121039945 GCCTGCCTGTGTTCTTGTCTTCACGCC-GGCCTTGGGTACGGGA
i nomLeu3.chr6             C 0 I 1
s rheMac8.chr6             179528235 43 - 180051392 GCCTGCCTGTGCTGTTCTCTTCACGCC-GGCCTTTGGTACGGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261061 43 - 181584905 GCCTGCCTGTGCTGTTCTCTTCACGCC-GGCCTTTGGTACGGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262195 43 -   1764207 GCCTGCCTGTGCTGTTCTCTTCACGCC-GGCCTTTGGGACGGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272850 38 -  16742782 GCCTGCCTGTG-----TTCTTCACGCA-GGCCTTTGGTATGGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576296 38 -  91010382 GCCTGCCTGTG-----TTCTTCACGCC-AGCCTTTGCTACGGGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      171104 38 -    438239 GCCTGCCTGTG-----TTCTTCACGCT-GGCCTTTGGTATGGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199343 43 -    514179 GCCTGCCTGTGTTCTTCTCTTCATGCC-GGCCTTTGGTACGGGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855617 43 + 204313951 GCCCGCCTGTGACCTTGTCTTCACGCC-AGCGTGTGGAATGGGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014874 43 +  16417988 GCCTGCCTGTGACCTTGTCTTCACACC-AGCGTTTGGAACGGGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       99241 43 +    298490 GCCTGCCTGTGATCTTGTCTTCACGCC-AGCGTCTGGAACGGGA
i cebCap1.NW_016108158v1   I 66 C 0
s aotNan1.NW_018503740v1    25428112 43 -  25620257 GCCTGCCTGTGATCTCGTCTTCACGCC-AGCATTTGGAACGGGA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1883617 44 -   2165740 ATGTGTTGGGGTTCCCATCTTTATGCCAGGTGTTTGGAACAGGA
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11722830 1518 +  42124431 I

a score=258573.000000
s hg38.chr5_KI270793v1_alt     71120 31 +    126136 GGGAGCCATCCACGGCCCACACTGCAGCTCC
s panTro5.chr5             181333779 31 - 181907262 GGGAGCCATCCACGGCCCACACTGCAGCTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054377 31 - 183735486 GGGAGCCATCCATGGCCCACACTGCAGCTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      142986 31 +    698298 GGGAGCCATCCATGGCCCACACTGCAGCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528278 31 - 180051392 GGGAGCCACCCATGGCCCACACTGCAACTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261104 31 - 181584905 GGGAGCCACCCATGGCCCACACTGCAACTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262238 31 -   1764207 GGGAGCCACCCATGGCCCACACTGCAACTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272888 31 -  16742782 GGAAGCCACCCATGGCCCACACTGCAACTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576334 31 -  91010382 GGGAGCCACCCATGGCCCACACTGCAACTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      171142 31 -    438239 GGGAGCCACCCATGGTCCACACTGCAACTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199386 31 -    514179 GGGAGCTACCCATGGCCCACACTGCAACTCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855660 31 + 204313951 GGGCACACTCCACGGCCCACACGGCAGCTCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014917 31 +  16417988 GGGCACAGTCCACGGCCCACACAGCAGCTCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       99284 31 +    298490 GGGCACACACCACGGCCCACACAGCAGCTCC
i cebCap1.NW_016108158v1   C 0 I 171
s aotNan1.NW_018503740v1    25428155 31 -  25620257 GGACGCACTCCACGGCCCACGCAGCAGCTCC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1883661 27 -   2165740 ----GCTGTTCATGGGCCACAAAGTAGCTTC
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120572302  1 - 121039945 I

a score=74417.000000
s hg38.chr5_KI270793v1_alt     71151 10 +    126136 CGTGACCTCC
s panTro5.chr5             181333810 10 - 181907262 CGTGACCTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054408 10 - 183735486 CGTGACCTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143017 10 +    698298 CGTGACCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528309 10 - 180051392 TGCGACCTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261135 10 - 181584905 TGCGACCTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262269 10 -   1764207 TGCGACCTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272919 10 -  16742782 TGCGACCTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576365 10 -  91010382 TGCGACCTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      171173 10 -    438239 TGCGACCTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199417 10 -    514179 TGTGACCTCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855691 10 + 204313951 TGTGGCCTCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014948 10 +  16417988 TGTGGCCTCC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25428186 10 -  25620257 TGTGGCCTCC
i aotNan1.NW_018503740v1   C 0 I 51
s otoGar3.GL873745           1883688 10 -   2165740 TATCCCCTGC
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       99315 171 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120572302  1 - 121039945 I

a score=323242.000000
s hg38.chr5_KI270793v1_alt     71161 65 +    126136 GCACGGCCCCGTGCGGACACTCATCTGGATTTTG-------TTTGTGCTCAGGAGAGGCTCTGCA-TTGAACG
s panTro5.chr5             181333820 65 - 181907262 GCACGGCCCCGTGCGGACACACATCTGGATTTTG-------TTTGTGCTCAGGAGAGGCTCTGCA-TTGAACG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054418 65 - 183735486 GCACGGCCCCGTGCGGACACACATCTGGATTTTG-------TTTGTGCTCAGGAGAGGCTCTGCA-TTGAAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143027 65 +    698298 GCACGGCCCCGTGCGGACACACATCTCGATTTTG-------TTTGTGCTCAGGAGAGGCTCTGCA-TTGAACG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528319 66 - 180051392 GCGCAGCCCAGTATGGACACGCACCTGGATTTTG-------TTTGTACTCAGGAGAGGCTCTGCATTTTAACT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261145 66 - 181584905 GCGCAGCCCAGTATGGACACGCACCTGGATTTTG-------TTTGTACTCAGGAGAGGCTCTGCATTTTAACT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262279 66 -   1764207 GTGCAGCCCAGTATGGACACGCACCTGGATTTTG-------TTTGTACTCAGGAGAGGCTCTGCATTTTAACT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      272929 66 -  16742782 GCGCAGCCCAGTATGGACACGCACCTGGATTTTG-------TTTGTACTCAGGAGAGGCTCTGCATTTTAACT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576375 66 -  91010382 GCGCAGCCCAGTATGGACACGCACCTGGACTTTG-------CTTGTACTCAGGAGAGGCTCTGCATTTTAACT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      171183 66 -    438239 GCGCAGCCCAGTATGGATACGCACCTGGATTTTG-------TTTGTACTCAGGAGAGGCTCTGCATTTTACCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199427 66 -    514179 GCGCAGCCCAGTATGGACACACACCTGGATTTTG-------TTTGTACTCAGGAGAGGCTCTGCATTTTAACT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855701 63 + 204313951 TCGCAGCCCCCAGGGGACACA-GTCTGGATCCTG-------CTTGTACTCAGGGGAGGCTCT-CA-GAAAACC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16014958 63 +  16417988 TCGAAGCACCC-GGGGACACACGACTGGATCCTG-------CTTGTACTCAGGGGAGGCTTT-CA-GAAAACC
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1883698 59 -   2165740 GTGCAACCCAGTGTGGACAC--ACCTGGGCTCTGTGTTAGTTTCCTTTCCAAATGGAGCTC------------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25428196 51 -  25620257 I
e cebCap1.NW_016108158v1       99315 171 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120572302  1 - 121039945 I

a score=222958.000000
s hg38.chr5_KI270793v1_alt     71226 32 +    126136 ACCTTGCACTGGGCCGGTTTCTTTTCTAAAGG
s panTro5.chr5             181333885 32 - 181907262 ACCTTGCACTGGGCCGGTTTCTTTTCTAAAGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054483 32 - 183735486 ACCTTGCACTGGGCCGGTTTCTTTTCTAAAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143092 32 +    698298 ACCTTGCACTGGGCCGGTTTCTTTTCTAAAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528385 32 - 180051392 ACCTTGCACGCAGCCGGTTTCTTTTCTAAAGG
i rheMac8.chr6             C 0 I 21
s macFas5.chr6             181261211 32 - 181584905 ACCTTGCACGCAGCCGGTTTCTTTTCTAAAGG
i macFas5.chr6             C 0 I 21
s macNem1.NW_012012389v1      262345 32 -   1764207 ACCTTGCACGCAGCCGGTTTCTTTTCTAAAGG
i macNem1.NW_012012389v1   C 0 I 21
s cerAty1.NW_012009470v1      272995 32 -  16742782 ACCTTGCACACAGCCGGTTTCTTTTCTAAAGG
i cerAty1.NW_012009470v1   C 0 I 19
s chlSab2.chr4              90576441 32 -  91010382 ACCTTGCACGCAGCCGGTTTCTTTTCTAAAGG
i chlSab2.chr4             C 0 I 21
s manLeu1.NW_012110441v1      171249 32 -    438239 ACCTTGCACACAGCCGGTTTCTTTTCTAAAGG
i manLeu1.NW_012110441v1   C 0 I 19
s colAng1.NW_012118799v1      199493 32 -    514179 ACCTTGCACGTGGCCGGTTTCTTTTCTAAAGG
i colAng1.NW_012118799v1   C 0 I 21
s calJac3.chr2             203855764 32 + 204313951 ACCTTGTACTGGGCCAGTTTCTTTTCTGAAGG
i calJac3.chr2             C 0 I 19
s saiBol1.JH378155          16015021 32 +  16417988 ACCTTGCACTGGGCCGGTTTCTCTTCTGAAGG
i saiBol1.JH378155         C 0 I 19
s aotNan1.NW_018503740v1    25428247 32 -  25620257 ACCTTGCACTGGGCTGGTTTCTTTTCTGAAGG
i aotNan1.NW_018503740v1   I 51 I 33
s otoGar3.GL873745           1883757 16 -   2165740 ATGTACCTCCAGGCTG----------------
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       99315 171 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120572302  1 - 121039945 I

a score=22386.000000
s hg38.chr5_KI270793v1_alt     71258 3 +    126136 TTC
s panTro5.chr5             181333917 3 - 181907262 TTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054515 3 - 183735486 TTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143124 3 +    698298 TTC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528438 3 - 180051392 TTC
i rheMac8.chr6             I 21 C 0
s macFas5.chr6             181261264 3 - 181584905 TTC
i macFas5.chr6             I 21 C 0
s macNem1.NW_012012389v1      262398 3 -   1764207 TTC
i macNem1.NW_012012389v1   I 21 C 0
s cerAty1.NW_012009470v1      273046 3 -  16742782 TTC
i cerAty1.NW_012009470v1   I 19 C 0
s chlSab2.chr4              90576494 3 -  91010382 TTC
i chlSab2.chr4             I 21 C 0
s manLeu1.NW_012110441v1      171300 3 -    438239 TTC
i manLeu1.NW_012110441v1   I 19 C 0
s colAng1.NW_012118799v1      199546 3 -    514179 TTC
i colAng1.NW_012118799v1   I 21 C 0
s calJac3.chr2             203855815 3 + 204313951 TTT
i calJac3.chr2             I 19 I 12
s saiBol1.JH378155          16015072 3 +  16417988 TTC
i saiBol1.JH378155         I 19 I 12
s otoGar3.GL873745           1883773 2 -   2165740 -TC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25428279 33 -  25620257 I
e cebCap1.NW_016108158v1       99315 171 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120572302 1 - 121039945 I

a score=197837.000000
s hg38.chr5_KI270793v1_alt     71261 33 +    126136 CAGAGGGCATGGCTGTCAACTTCCCGCT---TGTGT
s panTro5.chr5             181333920 33 - 181907262 CAGAGGGCATGGCTGTCAACTTCCCGCT---TGTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054518 33 - 183735486 CAGAGGGCATGGCTGTCAACTTCCCGCT---TGTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143127 33 +    698298 CAGAGGGCATGGCTGTCAACTTCCCGCT---TGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528441 33 - 180051392 CAGGGAGCGTGACTGTCGACTTCACCCT---TGTGT
i rheMac8.chr6             C 0 I 12
s macFas5.chr6             181261267 33 - 181584905 CAGGGAGCGTGACTGTCGACTTCACCCT---TGTGT
i macFas5.chr6             C 0 I 6
s macNem1.NW_012012389v1      262401 33 -   1764207 CAGGGAGCGTGACTGTCGACTTCACCCT---TGTGT
i macNem1.NW_012012389v1   C 0 I 6
s cerAty1.NW_012009470v1      273049 32 -  16742782 CAGGGAGCGTGACTGTCGACTTCA-CCT---TGTGT
i cerAty1.NW_012009470v1   C 0 I 6
s chlSab2.chr4              90576497 33 -  91010382 CAGGGAGCGTGACTGTCGACTTCACCCT---TGTGT
i chlSab2.chr4             C 0 I 6
s manLeu1.NW_012110441v1      171303 32 -    438239 CAGGGAGCGTGACTGTCGACTTCA-CCT---TGTGT
i manLeu1.NW_012110441v1   C 0 I 6
s colAng1.NW_012118799v1      199549 33 -    514179 CAGGGAGCGTGACTGTCGACTTCACCCT---TGTGT
i colAng1.NW_012118799v1   C 0 I 6
s calJac3.chr2             203855830 32 + 204313951 CAGGGGGCGTGGCTGTGGACTCCACGC----TATGT
i calJac3.chr2             I 12 C 0
s saiBol1.JH378155          16015087 31 +  16417988 C-GGGGGCATGGCTGTCGACTCCATGG----TACGT
i saiBol1.JH378155         I 12 C 0
s aotNan1.NW_018503740v1    25428312 32 -  25620257 CAGGGGGCATGGCTGTCGACTCCGCGC----TACGT
i aotNan1.NW_018503740v1   I 33 C 0
s otoGar3.GL873745           1883775 36 -   2165740 CAAGGAGAATGGTCATAGACTTCATGCTTACTGTGT
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       99315 171 +    298490 I
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120572302  1 - 121039945 I

a score=1080.000000
s hg38.chr5_KI270793v1_alt     71294 1 +    126136 -C
s panTro5.chr5             181333953 1 - 181907262 -C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054551 1 - 183735486 -C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143160 1 +    698298 -C
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181261306 1 - 181584905 -C
i macFas5.chr6             I 6 C 0
s macNem1.NW_012012389v1      262440 1 -   1764207 -C
i macNem1.NW_012012389v1   I 6 C 0
s cerAty1.NW_012009470v1      273087 1 -  16742782 -C
i cerAty1.NW_012009470v1   I 6 C 0
s chlSab2.chr4              90576536 1 -  91010382 -C
i chlSab2.chr4             I 6 C 0
s manLeu1.NW_012110441v1      171341 1 -    438239 -C
i manLeu1.NW_012110441v1   I 6 C 0
s colAng1.NW_012118799v1      199588 1 -    514179 -C
i colAng1.NW_012118799v1   I 6 C 0
s calJac3.chr2             203855862 1 + 204313951 -C
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25428344 1 -  25620257 -C
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1883811 1 -   2165740 A-
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1       99315 171 +    298490 I
e saiBol1.JH378155          16015118 0 +  16417988 C
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120572302 1 - 121039945 I
e rheMac8.chr6             179528474 12 - 180051392 I

a score=127201.000000
s hg38.chr5_KI270793v1_alt     71295 19 +    126136 CCCGTCGGGTTCCAGGGCA
s panTro5.chr5             181333954 19 - 181907262 CCCGTCGGGTTCCAGGGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054552 19 - 183735486 CCCGTCGGGTTCCAGGGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143161 19 +    698298 CCGGCCGGGTTCCAGGACA
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181261307 19 - 181584905 CCCGTCAGGTTCTGGCGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262441 19 -   1764207 CCCGTCAGGTTCTGGCGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273088 19 -  16742782 CCCGTCAGGTTCTGGCGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576537 19 -  91010382 CCCGTCAGGTTCTGGCGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      171342 19 -    438239 CCTGTCAGGTTCTGGCGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199589 19 -    514179 CCCGTCAGGTTCTGGCGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855863 19 + 204313951 CCCGTCGGGTTCCAGGACA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015118 19 +  16417988 CCCATCGGGTTCCAGGGCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       99486 19 +    298490 CCCATCAGGTTCCAGGGCA
i cebCap1.NW_016108158v1   I 171 C 0
s aotNan1.NW_018503740v1    25428345 19 -  25620257 CCCATCGGGTTCCAAGGCA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1883812 19 -   2165740 TACACAGGGTCCTAAATCA
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120572302  1 - 121039945 I
e rheMac8.chr6             179528474 12 - 180051392 I

a score=91789.000000
s hg38.chr5_KI270793v1_alt     71314 19 +    126136 CAGAGGTTTA-TGCGGAGGG
s panTro5.chr5             181333973 19 - 181907262 CAGAGGTTTA-TGCGGAGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054571 19 - 183735486 CAGAGGTTTA-TGCGGAGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143180 19 +    698298 CAGAGGTTTA-TGCGGAGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528486 20 - 180051392 CAGAGGTTTATTTGGGGGTG
i rheMac8.chr6             I 12 C 0
s macFas5.chr6             181261326 19 - 181584905 CCGCGGTTTA-TGGGGGGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262460 17 -   1764207 CAGAGGTTTA-TTGGGGG--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273107 18 -  16742782 CAGAGGTTTA-TGGGGGG-G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576556 18 -  91010382 CAGAGGTTTA-TGGGGGG-G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      171361 18 -    438239 CAGAGGTTTA-TGGGGGG-G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199608 18 -    514179 CAGAGGTTTA-TGGGGGG-G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855882 19 + 204313951 CAGAGCTTTA-TGGGGAGAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015137 19 +  16417988 CAGAGGTTTA-CAGGGAGAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1       99505 19 +    298490 CAGAGGTTTA-TGGGAAGGT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25428364 19 -  25620257 CAGATGTTTA-TGGGGAGAG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1883831  1 -   2165740 -------------------C
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11722830 1518 +  42124431 I
e nomLeu3.chr6             120572302  1 - 121039945 I

a score=2411514.000000
s hg38.chr5_KI270793v1_alt     71333 323 +    126136 CTC-GAGGGACTCACACCTGGGGGCAGAGTTGGGCAGCGGCGACGGGCACTCTGG-AGCCCATCACCCCCTTGG----------TGTC----------GAGGCCCAGGGGCCTGATGTGCCCACTGCTGGCCAGTTTTTGGGTCGGGCCCCTCCCCCAGGGGG-GT---GCTGGGCTACCCTCCTGAGGGCAGAAGCAATTGTTAAGAGCCTCATCACTGTGGTGTCAGCCACTAGCCCT-CCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGCGGAGGGGTCCTGGTCCTGGGCGGCCCCACCACACCCTGAA------CCGCCTGAGCTTCTGACT-GCATGGA--ATATTCACAGG
s panTro5.chr5             181333992 317 - 181907262 CTC-GAGGGACTCACACCTGGGGGCAGAGTTGGGCAGCGGCGACGGGCACTCTGG-AGCCCATCACCTCCTTGG----------TGTC----------GAGGCCCAGGGGCCTGATGTGCCCACTGCTGGCCAGTTGTTGGGTCGGGCCCCTCCCCCAGGGGG-GT---GCTGGGCTACCCTCCTGAGGGCAGAAGCAATTGTTAAGAGCCTCATCACTGTGGTGTCAGCCACTAGCCCT-CCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGCGGAGG------GGTCCTGGGTGGCCCCACCACACCCTGAA------CCGCCTGAGCTTCTGACT-GCATGGA--ATATTCACAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183054590 317 - 183735486 CTC-GAGGGACTCACACCTGGGGGCAGAGTTGGGCAGCGGTGACGGGCACTCTGG-AGCCCATCACCTCCTTGG----------TGTC----------GAGGCCCAGGGGCCTGATGTGCCCACTGCTGGCCAGTTGTTGGGTCGGGCCCCTCCCCCAGGGGG-GT---GCTGGGCTACCTTCCTGAGGGCAGAAGCAATTGTTAAGAGCCTCATCACTGTGGTGTCAGCCACTAGCCCT-TCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGCGGAGG------GGTCCTGGGTGGCCCCACCACACCCTGAA------CCGCCTGAGCTTCTGACT-GCATGGA--ATATTCACAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143199 316 +    698298 CTC-GAGGGACTCACACCTGGGGGCAGGGTTGGGCAGCGGCGACGGGCACTCTGG-AGCCCATCACC-CCTTGG----------TGTC----------GAGGCCCAGGGGCCTGATGTGCCCACTGCTGGCCAGTTGGTGGGTCGGGCCCCTCCCCCAGGGGG-GT---GCTGGGCTCCCCTCCTGAGAGCAGAAGCAATTGTTAAGAGCCTCATCACTGTGGTGTCAGTCACTAGCCCT-CCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGCGGAGG------GGTCCTGGGCGGTCCCACCACACCCTGAA------CCGCCTGAGCTTCTGACT-GCATGGA--ATATTCACAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528506 306 - 180051392 CGCTGAGGGATTCTCACCTGA-GGCAGGGCTGGCCAGTGGTGATGGGCACTCTGGTAGCCCATCA-----TTGG----------TGTC--------------CCCA-GGGCTTGACGTGCCCACTATGGGCCAGCTGGT-GGTCAGGCTCTTCCCCCA-GCGG-GT---GCCGGGCTACCCTCCTGAGGGCAGAAGCAACTGTTAAGAGCCTCATCTCCACAGTGTCAGCCACCAGCCCT-CCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGGGGAGG------GGTCCTGAGCGGCCCCACCACACCCTGAA------CCACCTGAGCTTGTGGCT-GCGTGGA--ACATTCACAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261345 314 - 181584905 CTC-GAGGGACTCACACCTGAGGGCAGGGCTGGGCAGTGGTGATGGGCACTCTGG-AGCCCATCACCCCCTTGG----------TGTC----------AAGGCCCA-GGGCTTGACGTGCCCACTATGGGCCAGCTGGT-GGTCAGGCTCCTCCCCCA-GCGG-GT---GCCGGGCTACCCTCCGGAGGGCAGAAGCAACTGTTAAGAGCCTCATCTCCGCAGTGTCAGCCACCAGCCCT-CCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGGGGAGG------GGTCCTGAGCGGCCCCACCACACCCTGAA------CCACCTGAGCTTGTGGCT-GCGTGGA--ACATTCACAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262477 309 -   1764207 ------GGGACTCACACCTGAGGGCAGGGCTGGGCAGTGGTGATGGGCACTCTGG-AGCCCATCGCCCCCTTGG----------TGTC----------AAGGCCCA-GGGCTTGACGTGCCCACTATGGGCCAGCTGGT-GGTCAGGCTCCTCCCCCA-GCGG-GT---GCCGGGCTACCCTCCTGAGGGCAGAAGCAACTGTTAAGAGCCTCATCTCCGCAGTGTCAGCCACCAGCCCT-CCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGGGGAGG------GGTCCTGAGCGGCCCCACCACACCCTGAA------CCACCTGAGCTTGTGGCT-GCGTGGA--ACATTCACAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273125 314 -  16742782 CTC-GAGGGACTCACACCTGAGGGCAGGGCTGGGCAGTGGTGATGGGCACTCTGG-AGCCCATCACCCCCTTGG----------TGTC----------AAGGCCCA-GGGCCTGACATGCCCACTACGGGCCAGCTGGT-GGTCAGGCTCCTCCCCCA-GCGG-GT---GCCGGGCTACCCTCCTGAGGGCAGAAGCAATTGTTAAGAGCCTCATCTCCGCAGTGTCAGCCACCAGCCCT-CCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGGGGAGG------GGTCCTGAGCAGCCCCACCACACCCTGAA------CCATCTGAGCTTGTGGCT-GCGTGGA--ACATTCACAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576574 314 -  91010382 CTC-GAGGGACTCACACCTGAGGGTAGGGCTGGGCAGTGGTGATGTGCACTCTGG-AGCCCATCACCCCCTTGG----------TGTC----------AAGGCCCA-GGGCCTGACATGCCCACTGCGGGCCAGCTGGT-GGTCAGGCTCCTCCCCCA-GTGG-GT---GCCGGGCTACCTTCCTGAGGGTAGAAGCAATTGTTAAGAGCCTCATCTCCGCAGTGTCAGCCACCAGCCCT-CCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGGGGAGG------GGTCCTGAGCGGCCCCACCACACCCTGAA------CCCCCTGAGCTTGTGGCT-GCGTGGA--ACATTCACAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      171379 314 -    438239 CTC-GAGGGACTCACACCTGAGGGCAGGGCTGGGCAGTGGTGATGGGCACTCTGG-AGCCCATCACCCCCTTGG----------TGTC----------AAGGCCCA-GGGCCTGACATGCCCACTACGGGCCAGCTGGT-GGTCAGGCTCCTCCCCCA-GCGG-GT---GCCGGGCTACCCTCCTGAGGGCAGAAGCAATTGTTAAGAGCTTCATCTCTGCAGTGTCAGCCACCAGCCCT-CCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGGGGAGG------GGTCCTGAGTGGCCCCACCACACCCTGAA------TCACCTGAGCTAGTGGCT-GTGTGGA--ACATTCACAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199626 314 -    514179 CTC-GAGGGACTCACACCTGAGGGCAGGGCTGGGCAGTGGTGATGGGCACTCTGG-AGCCCATCACCCCCTTGG----------TGTC----------AAGGCCCA-GGGCCTGATGTGCCCACTACGGGCCAGCTGGTGGGTCAGGCTCCTCCCCCA-GAGG-GT---GCCAGGCTACCCTCCTGAGGGCAGAAGCAACTGTTAAGAGCCTCATCTCCGCAGTGTCAGCCACTAGCCCT-CCCCAGCTGTGGAACAGGGGT-TGGTCCCCATGGGGAGG------GGTCCTGGGTGGCCCCACCACACCCTGAA------CCACCTGAGCT-GTGGCT-GCCTGGA--ACATTCACAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203855901 316 + 204313951 GCT-GAGGGACTCACACC--GGGGCAGGGCTGGGCAGCGGTGACAGGCACTCTGG-AGCCC-TCACCACCTTGGGGTGGCTGCGTGTC----------AAGGCCCAGGGGCCTGATGTGCCCACTGTTGGCCCGTTGG------GGGCCATCCCCAGG-GGGG-AT---GCCAGGCTACCCTCCTCAGGGCAGAAGCAACTGTTAGGAGCCTGATCTCCATGGTGGCAGCCACCAGCCCT--CCCAGCTGTGGAACAGGAGC-TGGTCCCCACGAGGAGA------GGGCCTGGGCGGCCCCACCATGCCCTGAA------CCACCTGAGCGTGCTGCT-GCGTGGA--ATATTCACAGG
i calJac3.chr2             C 0 I 4
s saiBol1.JH378155          16015156 314 +  16417988 CCT-GAGGGACTCACACC-GGGGGCAGGGCTGGGCAGCGGTGACGGGCACTCTGG-GGCCC-TCACCACCTTGGGGTGGCTGCGTGTC----------AAGGCCCAGGGGCCTGATGTGCCCACTGCCGGCCAGTTGGTGGGTCAGGCCATTCCCCGG-GGGG------GATAGGATACCCTCCTCAGGGCAGAAGCAACTGTTAAGAGCCTGATCTCCACGGTGGCAGCCACCAGCCCT--CCCAGCTGTGGAGCAGGAGC-TGGTCCCCATGGGGAGG------GGGCCTGGGCGGCCCCACCACACCCTGCA------CCAC---------CTGCC-GTGTGGAATATATCCACAGG
i saiBol1.JH378155         C 0 I 4
s cebCap1.NW_016108158v1       99524 323 +    298490 CCT-GAGGGACTCACACCGGGGGGCAGGGCTAGGCAGCGGCGACGGGCACTCTGG-AG-CC-TCACCACCTTGGGGTGGCTGCGTGTC----------AAGACCCAGGGGCCTAATGTGCCCACTGTCGGTCAGTTGGTGGGTCAGGCCACACCCTGG-GGGGGAT---GCCAGGATACCCTCCGCAGGGCAG-AGCAGCTGTTAGGAGCCTGATCTCCACGGTGGCAGCCACCAGCCCT--CCCAGCTGTGGAACAGGAGC-TGGTCCCCACGGAGAGG------GGGACTGGGCGGCCCCACCGCACCCTGAA------CCTCCTGAGCGTGCTGCT-GCGTGGA--ATATTCACAGG
i cebCap1.NW_016108158v1   C 0 I 180
s aotNan1.NW_018503740v1    25428383 322 -  25620257 CCT-GAGGGACT--CACC-GGGGGCAGGGCTGAGCAGCGGTGACGGGCACTCTGG-AGCCC-TCACCACCTTGGGGTGGCTGCATGTC----------AAGGCCCAGAGGCCTGATGTGCCCACTGCCGGCCAGTTGCTGGGTCAGGCCACTCCCCGG-GGGGGAT---GCCAGGCTACCCTCCTCAGGGCAGAAGCAACTGTTAGGAGCCTGATCTCCACGGTGGCAGCCACCAGCCCT--CCCAGCTGTGGAACAGGAGC-TCATCCCCCCGGGGAGG------GGGCCTGGGCAGCCCCACCATACCCTGAA------CCACCTGAGCGTGCTGCT-GCGTGGA--ATATTCACAGG
i aotNan1.NW_018503740v1   C 0 I 125
s otoGar3.GL873745           1883832 296 -   2165740 ATC-AAGGGGCTCATACT-AGGGGCAGGACAGGGTAGCTTTGCTGGGCACTGTGG-GGCTGGACATCCCTTTGG----------TGTGGCTCAGCAGGGAGACACA-GGACCTGATGGGCCCACTGT-GGCCAACCAGCAGATAGATGCTGCCCCCCA-CAGG-GTATGGCCAGGCTGACCTACCTGGGGCAGAACCAGTTGCTGAGAGCCCCATCTTCAAAGTATTAGCTGCTAGTCCTACCCTAGCCATGGCTCAGGGCTGTGGTCCCGTCAAAGAGC------AGACC-------------------------------CTCCTGTGCT-----AT-GTATAGA--TTATTCACA--
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11724348 249 +  42124431 CTA-GAGAGAGTGGCTCCTGGGAGCCAGCGAGGCCACCGGAGA---------GGG-AGCCCCGAACATCCCTG-----------CCAC----------GTAGCTCA-G---CAGAGACTCCCACTGCTGCCCA-----------------CCCCCCCG------GC----------TGCCCCCCTCCAGGCAG-------------GGGCCTCATCTGAGAAGGG--------------T----CAGCTGGGGAGCAGGACC-GAGGCTCC--GGGGAGG------GCACACAGGCAGCCACCCCTCCGTGTGGAACCAACCAACCCACCCTCGTTGCTCGCACAAA--TTATTCGCAAG
i canFam3.chr34            I 1518 C 0
e nomLeu3.chr6             120572302   1 - 121039945 I

a score=101914.000000
s hg38.chr5_KI270793v1_alt     71656 17 +    126136 ACTGCAGTGTGAGAAGG
s panTro5.chr5             181334309 17 - 181907262 ACTGCAGTGTGAGAAGG
i panTro5.chr5             C 0 M 5343
s panPan2.chr5             183054907 17 - 183735486 ACTGCAGTGTGAGAAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143515 17 +    698298 ACTGCAGTGTGAGAAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528812 17 - 180051392 ACTGCAGTGTGAGGAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261659 17 - 181584905 ACTGCAGTGTGAGGAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262786 17 -   1764207 ACTGCAGTGTGAGGAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273439 17 -  16742782 ACTGCAGTGTGAGGAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576888 17 -  91010382 ACTGCAGTGTGAGGAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      171693 17 -    438239 ACTGCAGTGTGAGGAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199940 17 -    514179 ACTGCAGTGTGAGGAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856221 17 + 204313951 CTCACAGTGGGAGGAGG
i calJac3.chr2             I 4 C 0
s saiBol1.JH378155          16015474 16 +  16417988 CTCACAGTGGGAGG-GG
i saiBol1.JH378155         I 4 C 0
s otoGar3.GL873745           1884128 14 -   2165740 ---GCAATATGCAGAAG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11724597  9 +  42124431 -----AGTGGAAGG---
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e nomLeu3.chr6             120572302  1 - 121039945 I

a score=263604.000000
s hg38.chr5_KI270793v1_alt     71673 60 +    126136 CAGCACC-GCCCCGGCGCCCG-CGAGGAAGCCGA-ACTGCTCATAAGTTAAGCAGCCCCAGCC
s panPan2.chr5             183054924 61 - 183735486 CAGCACCAGCCCTGGCGCCGG-CGAGGAAGCCGA-ACTGCTCAGAAGTTAAGCAGCCCCAGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143532 61 +    698298 CAGCACCAGCCCAGGCGCCGG-CGAGGAAGCCGA-ACTGCTCAGAAGTTAAGCAGCCCCAGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528829 62 - 180051392 CGGCACCAGTCGGGGCGCCGG-TGAGGAAGTCGAGGCTGCTCTGCAGTTAACCAGCCTCAGCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261676 62 - 181584905 CGGCACCAGTCGGGGCGCCGG-TGAGGAAGTCGAGGCTGCTCTGCAGTTAACCAGCCTCAGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262803 62 -   1764207 CGGCACCAGTCGGGGCGCCGG-TGAGGAAGTCGAGGCTGCTCTGCAGTTAACCAGCCTCAGCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273456 62 -  16742782 CGGCACCAGTCCGGGCGCCGG-TGAGGAAGTCGAGGCTGCTCTGCAGTTAACCAGCCTTAGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90576905 62 -  91010382 CGGCACCAGTCCGGGCGCCGG-TGAGGAAGTCGAGGCTGCTCTGCAGTTAACCAGCCTAAGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      171710 62 -    438239 CGGCACCAGTCCGGGCACCGG-TGAGGAAGTCGAGGCTGCTCTGCAGTTAACCAGCCTCAGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      199957 62 -    514179 CGGCACCAGCCCGGGCGCCAG-TGAGGAAGTCGAGGCTACTCTACAGTTAACCAGCCTCAGCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856238 61 + 204313951 CAGATCCAGCCAGGACACTGG-GGAGGAAGCCGG-GCTGCTCAGGAGTCACATGGCCCCCATG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015490 61 +  16417988 CAGATCCAGCCAGGGCGGCGG-GGAGGAAGCCGG-ACTGCTCAGGAGTCACGCAGCCCCTGCC
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1884142 62 -   2165740 TGGCATTACCCTAGGCGGGAGACGAGGAAGCTGA-ACTTCACAGGAGTGAGGCAGACAGGACA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11724606 60 +  42124431 CAGCGCT-CCCCAGCTGTGGG-TGAGACAGGTGA-ACTTCATCAAAGTCCAGCAACCCCTGCA
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e nomLeu3.chr6             120572302  1 - 121039945 I

a score=117996.000000
s hg38.chr5_KI270793v1_alt     71733 21 +    126136 AGGTCACGG-----GGCAAGGAAGCC
s panPan2.chr5             183054985 21 - 183735486 AGGTCACAG-----GGCAAGGAAGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143593 21 +    698298 AGGTCACGG-----GGCAAGGAAGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572303 21 - 121039945 AGGTCACGG-----GGCCAGGAAGAC
i nomLeu3.chr6             I 1 C 0
s rheMac8.chr6             179528891 21 - 180051392 AGGTCATGG-----GGCAAGGAAGCC
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181261738 21 - 181584905 AGGTCATGG-----GGCAAGGAAGCC
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      262865 21 -   1764207 AGGTCATGG-----GGCAAGGAAGCC
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      273518 21 -  16742782 AGGTCATGG-----GGCAAGGAAGCC
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90576967 21 -  91010382 AGGTCATGG-----GGCAAGGAAGCC
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      171772 21 -    438239 AGGTCATGG-----GGCAAGGAAGCC
i manLeu1.NW_012110441v1   C 0 M 1071
s colAng1.NW_012118799v1      200019 21 -    514179 AGGTCATGG-----GGCAAGGAAGAC
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203856299 20 + 204313951 ------TGGGCGCTGGCGAGGAAGAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015551 20 +  16417988 ------TGGGCGCTGGCACGGAAGAT
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1884204 21 -   2165740 AGGTCAGGC-----TATGAGGCAGCC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11724666 21 +  42124431 CGGCCACAC-----GGGTGGGAAGCT
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e cebCap1.NW_016108158v1       99847 180 +    298490 I

a score=47474.000000
s hg38.chr5_KI270793v1_alt     71754 11 +    126136 G-CCTGCGACCT
s panPan2.chr5             183055006 11 - 183735486 A-CCTGCGACCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143614 11 +    698298 G-CCTGCGACCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572324 12 - 121039945 GCCCTGCGACCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528913 11 - 180051392 -CCCTGTGACCT
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181261760 11 - 181584905 -CCCTGTGACCT
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      262887 11 -   1764207 -CCCTGTGACCT
i macNem1.NW_012012389v1   I 1 C 0
s cerAty1.NW_012009470v1      273540 11 -  16742782 -CCCTGTGACCT
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90576989 11 -  91010382 -CCCTGTGACCT
i chlSab2.chr4             I 1 C 0
s colAng1.NW_012118799v1      200041 11 -    514179 -CCCTGTGACCT
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203856319 12 + 204313951 GGCCTGCAACCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015571 12 +  16417988 GCCCTGCAACCT
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1884225 11 -   2165740 -GCCCACAATCT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11724687  9 +  42124431 ---GTGTAACCT
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=18317.000000
s hg38.chr5_KI270793v1_alt     71765 5 +    126136 CGGAA----
s panPan2.chr5             183055017 5 - 183735486 CGGAA----
i panPan2.chr5             C 0 M 921
s gorGor5.CYUI01015805v1      143625 5 +    698298 CGGAA----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572336 5 - 121039945 CGGAA----
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528924 5 - 180051392 CAGAA----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261771 5 - 181584905 CAGAA----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262898 5 -   1764207 CAGAA----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273551 5 -  16742782 CAGAA----
i cerAty1.NW_012009470v1   C 0 I 6
s chlSab2.chr4              90577000 5 -  91010382 CAGAA----
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200052 5 -    514179 CAGAA----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856331 5 + 204313951 TGGAA----
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015583 5 +  16417988 TGGAG----
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11724696 9 +  42124431 CTGAGCTCA
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=5472.000000
s hg38.chr5_KI270793v1_alt     71770 2 +    126136 AC
s gorGor5.CYUI01015805v1      143630 2 +    698298 AC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572341 2 - 121039945 AC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528929 2 - 180051392 AC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261776 2 - 181584905 AC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262903 2 -   1764207 AC
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90577005 2 -  91010382 AC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200057 2 -    514179 AC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856336 2 + 204313951 AG
i calJac3.chr2             C 0 C 0
s canFam3.chr34             11724705 2 +  42124431 GC
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      273556 6 -  16742782 I
e panPan2.chr5             183055022 921 - 183735486 M

a score=43313.000000
s hg38.chr5_KI270793v1_alt     71772 12 +    126136 CCCTGGTTCATC
s panPan2.chr5             183055961 12 - 183735486 CCCTGGTTTATC
i panPan2.chr5             M 921 C 0
s gorGor5.CYUI01015805v1      143632 12 +    698298 CCCCGGTTCATC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572343 12 - 121039945 CCCTGGTTCATC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528931 11 - 180051392 -CCAGGTTCATC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261778 11 - 181584905 -CCGGGTTCATC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      262905 11 -   1764207 -CCGGGTTCATC
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90577007 11 -  91010382 -CCCGGTTCATC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200059 11 -    514179 -CCCGGCTCATC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856338 12 + 204313951 CCCAGGTTTACC
i calJac3.chr2             C 0 C 0
s canFam3.chr34             11724707 12 +  42124431 TCCGGGCTTATC
i canFam3.chr34            C 0 I 24
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      273556  6 -  16742782 I

a score=33373.000000
s hg38.chr5_KI270793v1_alt     71784 15 +    126136 CCATGACCCACCC-CC
s panPan2.chr5             183055973 16 - 183735486 CCATGACCCGCCCACG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143644 14 +    698298 CCATGACCCACC--CC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572355 16 - 121039945 CCATGACCCACTCCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528942 15 - 180051392 CCGTGACCCACCCCC-
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181261789 15 - 181584905 CCGTAACCCACCCCC-
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      262916 15 -   1764207 CCGTGACCCACCCCC-
i macNem1.NW_012012389v1   C 0 I 729
s chlSab2.chr4              90577018 15 -  91010382 CTGTGGCCCACCCCC-
i chlSab2.chr4             C 0 I 1
s colAng1.NW_012118799v1      200070 15 -    514179 CCATGACCCACCCCC-
i colAng1.NW_012118799v1   C 0 I 427
s calJac3.chr2             203856350 15 + 204313951 CTGTGACCCGCCCCC-
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      273556  6 -  16742782 I

a score=1215.000000
s hg38.chr5_KI270793v1_alt     71799 1 +    126136 G
s panPan2.chr5             183055989 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143658 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572371 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528958 1 - 180051392 A
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181261805 1 - 181584905 A
i macFas5.chr6             I 1 C 0
s cerAty1.NW_012009470v1      273562 1 -  16742782 G
i cerAty1.NW_012009470v1   I 6 C 0
s chlSab2.chr4              90577034 1 -  91010382 A
i chlSab2.chr4             I 1 C 0
s calJac3.chr2             203856365 1 + 204313951 G
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I

a score=4460.000000
s hg38.chr5_KI270793v1_alt     71800 32 +    126136 TTCATCCGGTGACCCACC---------------CC--TCACCCCGGTTC
s panPan2.chr5             183055990 27 - 183735486 TTCATCCTGTGACCCGAC---------------CC-------CCCGTTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143659 34 +    698298 TTCATCCCGGGACCCACC---------------CCCCCCACCCCCGTTC
i gorGor5.CYUI01015805v1   C 0 I 128
s nomLeu3.chr6             120572372 32 - 121039945 TTCATCCCGTGACCCACC---------------CC--CCACCGCGGTTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179528959 18 - 180051392 TTCATCCCATGCCCCGGC-------------------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261806 18 - 181584905 TTCATCCCATGccccggc-------------------------------
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      273563 11 -  16742782 TTCATCCCATG--------------------------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577035 33 -  91010382 TTCGTCCCGTGCCTCGGCCCCCACCCCCGGTTC----------------
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I

a score=14401.000000
s hg38.chr5_KI270793v1_alt     71832 17 +    126136 ATCCCGTGACCCACCC-C
s panPan2.chr5             183056017 18 - 183735486 ATCCCGTGACCCACCCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143821 14 +    698298 ATCCCGTGACCCA----C
i gorGor5.CYUI01015805v1   I 128 C 0
s nomLeu3.chr6             120572404 16 - 121039945 ATCCCGTGACCCACCC--
i nomLeu3.chr6             C 0 T 77
s rheMac8.chr6             179528977  9 - 180051392 --------CCCCACCC-C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181261824  9 - 181584905 --------ccccaccc-c
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      273574  9 -  16742782 --------ACCCACCC-C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577068 17 -  91010382 ATCCTGTGACCCACCC-C
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I

a score=62939.000000
s hg38.chr5_KI270793v1_alt     71849 45 +    126136 CCCGTTCATCCCATGACCCAGCCCCCCACCCCGGTTCATCCCATG
s panPan2.chr5             183056035 37 - 183735486 CCCGTTCATCCTGCGACCCA--------CCCCTGTTCATCCCATG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143835 43 +    698298 CCCGTTCATCCCGTGACCCAGCCCCA--CCCCGGTTCATCCCGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179528986 45 - 180051392 CCGGTTCATCCCGTGCCCCGGCCCCCACCCCCGGTTCATCCCGTG
i rheMac8.chr6             C 0 I 31
s macFas5.chr6             181261833 45 - 181584905 ccaattcatcccgtgccccggcccccacccccggTTCATCCCGTG
i macFas5.chr6             C 0 M 431
s cerAty1.NW_012009470v1      273583 45 -  16742782 CCTATTCATCCCGTGCCCCGGCCCCCACCCCCAGTTCATCCCGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577085 45 -  91010382 CCCATTCATCCCGTGCCCCGGCCCCCACCCCCTGTTCATCCCGTG
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572420 77 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I

a score=1410.000000
s hg38.chr5_KI270793v1_alt     71894 6 +    126136 ACCCAG
s panPan2.chr5             183056072 6 - 183735486 ACCCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143878 5 +    698298 ACCCA-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179529062 6 - 180051392 ACCCAC
i rheMac8.chr6             I 31 I 1
s cerAty1.NW_012009470v1      273628 6 -  16742782 ACCCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577130 2 -  91010382 AC----
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572420 77 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I
e macFas5.chr6             181261878 431 - 181584905 M

a score=37947.000000
s hg38.chr5_KI270793v1_alt     71900 36 +    126136 CCCCCCAC---CCCGGTTCATCCCATGACCCACCCCCCA
s panPan2.chr5             183056078 36 - 183735486 CCCCCCAC---CCCAGTTTATCCCGTGACCCAGACCCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      143883 39 +    698298 CCCCCCACCCACCCCGTTCATCCCGTGACCCAGCCCCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179529069 36 - 180051392 CCCCCACC---CCCGCTTCATCCCGTGACCCAGCCCCCA
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181262311 28 - 181584905 CCCCCGGC---CCTGGTT-ATCTCGTGA-------CCCG
i macFas5.chr6             M 431 C 0
s cerAty1.NW_012009470v1      273634 36 -  16742782 CCCCCACC---CCTGGTTCATCCCGTGACCCAGCCCCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577132 29 -  91010382 CCCCCACC---CCCGCTTCATCCCGTGA-------CCCA
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572420 77 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I

a score=79803.000000
s hg38.chr5_KI270793v1_alt     71936 46 +    126136 -CCCCGGTTCATCCCGTGACCCA-CCCCCCG-------TTCATCCCATGACCCAG
s panPan2.chr5             183056114 46 - 183735486 -CCCTGGTTTATCCCATGACCCA-CCCTCAG-------TTCATCCCGTGACCCAG
i panPan2.chr5             C 0 T 204
s gorGor5.CYUI01015805v1      143922 46 +    698298 -CCCCGGTTCATCCCGTGACCCA-CACCCGG-------TTCATCCCGTGACCCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572343 45 - 121039945 -CCCTGGTTCATCCCATGACCCA-CTCCCCG-------TTCATCCCGTGACCCA-
i nomLeu3.chr6             T 77 C 0
s rheMac8.chr6             179529105 48 - 180051392 CCCCCTGTTCATCCCATGACCCACCCCCCCA-------TTCATCCCGTGACCCGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262339 48 - 181584905 CTCCTGGTTCATACCGTGACCCATCCCCCCA-------TTCATCCCGTGACCCAG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      273670 47 -  16742782 CCCCTGGTTCATCCCATGACCCA-ACCCCCA-------TTCATCCCGTGACCCGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577161 52 -  91010382 CCCCCCATTCATCCCGTGCCCCG-GCCCCCACCCCTAGTTCATCCCGTGACCC--
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I

a score=2295.000000
s hg38.chr5_KI270793v1_alt     71982 2 +    126136 CC
s gorGor5.CYUI01015805v1      143968 2 +    698298 CC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572388 2 - 121039945 CC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529153 2 - 180051392 CC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262387 2 - 181584905 CC
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      273717 2 -  16742782 GC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577213 1 -  91010382 -C
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I
e panPan2.chr5             183056160 204 - 183735486 T

a score=64921.000000
s hg38.chr5_KI270793v1_alt     71984 44 +    126136 CCCCA-----CCCCGGTTTATCCCGTGACCCACCCCCTGTTCATCCCGT
s panPan2.chr5             183055956 44 - 183735486 CCCCA-----CCCTGGTTTATCCCATGACCCGCCCACGGTTCATCCTGT
i panPan2.chr5             T 204 C 0
s gorGor5.CYUI01015805v1      143970 33 +    698298 CCCAC-----CCCTGGTTTATCCCGTGACCCACCCCCC-----------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572390 44 - 121039945 CCCCA-----CCGCGGTTCATCCCGTGACCCACCCCTGGTTTATCCCGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529155 49 - 180051392 CCCCCCCCGGCCCTGGTTTATCTCGCGACCCGCTCCTGGTTCATCCCGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262389 44 - 181584905 GCCAC-----CCCTGGTTTATCCCGTGACCCACCCCTGGTTTTTCCCGT
i macFas5.chr6             C 0 T 71
s cerAty1.NW_012009470v1      273719 45 -  16742782 CCCCA----GCCCTGGTTTATCTCGTGACCCGCTCCTGGTTCATCCCGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577214 44 -  91010382 ACCAC-----CCCCGCTTCATCCCGTGACCCATCCCACATTCATCCCGT
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I

a score=12699.000000
s hg38.chr5_KI270793v1_alt     72028 11 +    126136 GACCC-ACC--CCC
s panPan2.chr5             183056000 12 - 183735486 GACCCGACC--CCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144003 12 +    698298 -ACCC-GCCCACCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572434 11 - 121039945 GACCT-ACC--CCC
i nomLeu3.chr6             C 0 T 75
s rheMac8.chr6             179529204 11 - 180051392 GACCC-ATC--CCC
i rheMac8.chr6             C 0 C 0
s cerAty1.NW_012009470v1      273764 11 -  16742782 GACCC-ATC--CCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577258 11 -  91010382 GACCC-AGC--CCC
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I
e macFas5.chr6             181262433 71 - 181584905 T

a score=64247.000000
s hg38.chr5_KI270793v1_alt     72039 48 +    126136 -C------GTTCATCCCGTGACCCAGCCCCCAACCC-CGTTCATCCCGTGA-CCCAC
s panPan2.chr5             183056012 44 - 183735486 -C------GTTCATCCCGTGACCCACCCTCC----C-CGTTCATCCTGCGA-CCCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144015 49 +    698298 -C------GTTCATCCCGTGACCCAGCCCCCACCCC-GGTTCATCCCGTGACCCCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572370 48 - 121039945 -C------GTTCATCCCGTGACCCACCCCCCACCGC-GGTTCATCCCGTGA-CCCAC
i nomLeu3.chr6             T 75 T 76
s rheMac8.chr6             179529215 50 - 180051392 CC------ATTCATCCCGTGACCCAGCCGCCACCCCTGGTTTATCCCGTGA-CCCAC
i rheMac8.chr6             C 0 C 0
s cerAty1.NW_012009470v1      273775 50 -  16742782 CC------ATTCATCCCGTGACCCAGCCGCCACCCCTGGTTTATCCCGTGA-CCCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577269 56 -  91010382 CACCCCCGGTTCATTCTGTGACCCAGCCCCCACCCCTGGTTCATCCCATGA-CCCAC
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I
e macFas5.chr6             181262433 71 - 181584905 T

a score=1500.000000
s hg38.chr5_KI270793v1_alt     72087 1 +    126136 C
s panPan2.chr5             183056056 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144064 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179529265 1 - 180051392 C
i rheMac8.chr6             C 0 C 0
s cerAty1.NW_012009470v1      273825 1 -  16742782 C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577325 1 -  91010382 C
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572418 76 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I
e macFas5.chr6             181262433 71 - 181584905 T

a score=14520.000000
s hg38.chr5_KI270793v1_alt     72088 53 +    126136 CCC----AACCCCGGTTCAGCCCGTGACCCACCCCCCCCC----GTTCATCCCGTGACCCA
s panPan2.chr5             183056057 50 - 183735486 CCT-----------GTTCATCCCATGACCCAGCCCCCCACCCCAGTTTATCCCGTGACCCA
i panPan2.chr5             C 0 I 53
s gorGor5.CYUI01015805v1      144065 59 +    698298 CCCCACCCACCCCGGTTCATCCCGTGACCCAGCCCCCACCCC--GTTCATCCCGTGACCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s chlSab2.chr4              90577326 51 -  91010382 ----------CCCCATTCATCCCGTGACCGCCCCCCCAGCCCTGGTTTATCTCGTGACCCG
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572418 76 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I
e macFas5.chr6             181262433 71 - 181584905 T
e rheMac8.chr6             179529266  0 - 180051392 C

a score=-125.000000
s hg38.chr5_KI270793v1_alt     72141 1 +    126136 C
s gorGor5.CYUI01015805v1      144124 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572418 76 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577377 0 -  91010382 C
e cerAty1.NW_012009470v1      273826 0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      262931 729 -   1764207 I
e macFas5.chr6             181262433 71 - 181584905 T
e rheMac8.chr6             179529266 0 - 180051392 C
e panPan2.chr5             183056107 53 - 183735486 I

a score=600.000000
s hg38.chr5_KI270793v1_alt     72142 2 +    126136 CC
s gorGor5.CYUI01015805v1      144125 2 +    698298 CC
i gorGor5.CYUI01015805v1   C 0 C 0
s macNem1.NW_012012389v1      263660 2 -   1764207 CC
i macNem1.NW_012012389v1   I 729 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572418 76 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577377 0 -  91010382 C
e cerAty1.NW_012009470v1      273826 0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macFas5.chr6             181262433 71 - 181584905 T
e rheMac8.chr6             179529266 0 - 180051392 C
e panPan2.chr5             183056107 53 - 183735486 I

a score=14781.000000
s hg38.chr5_KI270793v1_alt     72144 22 +    126136 C--CCCCCGTTCATCCCGTGACCC
s gorGor5.CYUI01015805v1      144127 24 +    698298 CCACCCCGGTTCATCCCGTGACCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572342 22 - 121039945 --CCCCTGGTTCATCCCATGACCC
i nomLeu3.chr6             T 76 C 0
s macNem1.NW_012012389v1      263662 22 -   1764207 --CCCCCCATTCATCCCGTGACCC
i macNem1.NW_012012389v1   C 0 I 6
s chlSab2.chr4              90577377 22 -  91010382 --CTCCTGGTTCATCCCGTGACCC
i chlSab2.chr4             C 0 I 1
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macFas5.chr6             181262433 71 - 181584905 T
e rheMac8.chr6             179529266  0 - 180051392 C
e panPan2.chr5             183056107 53 - 183735486 I

a score=18519.000000
s hg38.chr5_KI270793v1_alt     72166 24 +    126136 TCCCCTCGTTCATCCCGTGACCCA
s gorGor5.CYUI01015805v1      144151 24 +    698298 ACACCCGGTTCATCCCGTGACCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572364 24 - 121039945 ACTCCCCGTTCATCCCGTGACCCA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262362 24 - 181584905 TCCCCCCATTCATCCCGTGACCCA
i macFas5.chr6             T 71 C 0
s chlSab2.chr4              90577400 24 -  91010382 TCCCCCCATTCATCCCGTGACCCA
i chlSab2.chr4             I 1 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      263684  6 -   1764207 I
e rheMac8.chr6             179529266  0 - 180051392 C
e panPan2.chr5             183056107 53 - 183735486 I

a score=-300.000000
s hg38.chr5_KI270793v1_alt     72190 1 +    126136 C
s gorGor5.CYUI01015805v1      144175 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572388 1 - 121039945 C
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262386 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263690 1 -   1764207 C
i macNem1.NW_012012389v1   I 6 C 0
s chlSab2.chr4              90577424 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      273826 0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e rheMac8.chr6             179529266 0 - 180051392 C
e panPan2.chr5             183056107 53 - 183735486 I

a score=44756.000000
s hg38.chr5_KI270793v1_alt     72191 33 +    126136 CCCCCACCCCTGGTTTATCCCGTGACCCAC-----CCC
s panPan2.chr5             183056160 33 - 183735486 ACCCCACCCCTGGTTTATCCCGTGACCCAC-----CCC
i panPan2.chr5             I 53 C 0
s gorGor5.CYUI01015805v1      144176 31 +    698298 -------ACCCGGTTCATCCCGTGACCCACCCCCACCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572389 32 - 121039945 -CCCCCACCGCGGTTCATCCCGTGACCCAC-----CCC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262387 33 - 181584905 CCGCCACCCCTGGTTTATCCCGTGACCCAC-----CCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263691 33 -   1764207 CCCCCAGCCCTGGTTTATCTCGTGACCCGC-----TCC
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90577425 33 -  91010382 CCGCCACCCCTGGTTTATCCCGTGACCCAC-----CCC
i chlSab2.chr4             C 0 I 29
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e rheMac8.chr6             179529266  0 - 180051392 C

a score=13812.000000
s hg38.chr5_KI270793v1_alt     72224 13 +    126136 CGGGTCATCCTGT
s panPan2.chr5             183056193 13 - 183735486 CGGTTCATCCCGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144207 13 +    698298 CGGTTCATCCCGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572421 13 - 121039945 TGGTTTATCCCGT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262420 13 - 181584905 TGGTTTTTCCCGT
i macFas5.chr6             C 0 T 98
s macNem1.NW_012012389v1      263724 13 -   1764207 TGGTTCATCCCGT
i macNem1.NW_012012389v1   C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e rheMac8.chr6             179529266  0 - 180051392 C

a score=5296.000000
s hg38.chr5_KI270793v1_alt     72237 6 +    126136 GACCCA
s panPan2.chr5             183056206 6 - 183735486 GACCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144220 6 +    698298 GACCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572434 6 - 121039945 GACCTA
i nomLeu3.chr6             C 0 T 52
s macNem1.NW_012012389v1      263737 6 -   1764207 GACCCA
i macNem1.NW_012012389v1   C 0 I 1
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826 0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macFas5.chr6             181262433 98 - 181584905 T
e rheMac8.chr6             179529266 0 - 180051392 C

a score=834.000000
s hg38.chr5_KI270793v1_alt     72243 8 +    126136 GACCCCAC
s panPan2.chr5             183056212 8 - 183735486 GACCCCAC
i panPan2.chr5             C 0 T 258
s gorGor5.CYUI01015805v1      144226 5 +    698298 CACCC---
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572388 8 - 121039945 CCCCCCAC
i nomLeu3.chr6             T 52 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826 0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      263743 1 -   1764207 I
e macFas5.chr6             181262433 98 - 181584905 T
e rheMac8.chr6             179529266 0 - 180051392 C

a score=17632.000000
s hg38.chr5_KI270793v1_alt     72251 49 +    126136 CCTGGTTTATCCCATGACCCGC-----CCACGGTTCATCCTGTGACCCG-CCCCC
s panPan2.chr5             183055962 50 - 183735486 CCTGGTTTATCCCATGACCCGC-----CCACGGTTCATCCTGTGACCCGACCCCC
i panPan2.chr5             T 258 C 0
s gorGor5.CYUI01015805v1      144231 49 +    698298 ---GGTTCATCCCGTGACCCACCCCCACCCCGGTTCATCCCGTGACCCA---CCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572396 49 - 121039945 CGCGGTTCATCCCGTGACCCAC-----CCCTGGTTTATCCCGTGACCTA-CCCCC
i nomLeu3.chr6             C 0 T 104
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      263743  1 -   1764207 I
e macFas5.chr6             181262433 98 - 181584905 T
e rheMac8.chr6             179529266  0 - 180051392 C

a score=1992.000000
s hg38.chr5_KI270793v1_alt     72300 7 +    126136 CGTTCAT
s panPan2.chr5             183056012 7 - 183735486 CGTTCAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144280 7 +    698298 CGTTCAT
i gorGor5.CYUI01015805v1   C 0 I 10
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572445 104 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826 0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      263743 1 -   1764207 I
e macFas5.chr6             181262433 98 - 181584905 T
e rheMac8.chr6             179529266 0 - 180051392 C

a score=-356.000000
s hg38.chr5_KI270793v1_alt     72307 14 +    126136 TCC--------CCCGCCCCA--------GC
s panPan2.chr5             183056019 30 - 183735486 CCCGTGACCCACCCTCCCCGTTCATCCTGC
i panPan2.chr5             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572445 104 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      263743  1 -   1764207 I
e macFas5.chr6             181262433 98 - 181584905 T
e rheMac8.chr6             179529266  0 - 180051392 C
e gorGor5.CYUI01015805v1      144287 10 +    698298 I

a score=-278.000000
s hg38.chr5_KI270793v1_alt     72321 2 +    126136 CC
s panPan2.chr5             183056049 2 - 183735486 GA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144297 2 +    698298 CC
i gorGor5.CYUI01015805v1   I 10 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572445 104 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826 0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      263743 1 -   1764207 I
e macFas5.chr6             181262433 98 - 181584905 T
e rheMac8.chr6             179529266 0 - 180051392 C

a score=1800.000000
s hg38.chr5_KI270793v1_alt     72323 3 +    126136 CCC
s panPan2.chr5             183056051 3 - 183735486 CCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144299 3 +    698298 CCC
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181262335 3 - 181584905 CCC
i macFas5.chr6             T 98 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572445 104 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826 0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      263743 1 -   1764207 I
e rheMac8.chr6             179529266 0 - 180051392 C

a score=15903.000000
s hg38.chr5_KI270793v1_alt     72326 24 +    126136 ACCCCTGGTTTATCCCGTGACCCA
s panPan2.chr5             183056054 23 - 183735486 ACCCCT-GTTCATCCCATGACCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144302 23 +    698298 ACCCCG-GTTCATCCCGTGACCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572341 24 - 121039945 ACCCCTGGTTCATCCCATGACCCA
i nomLeu3.chr6             T 104 C 0
s macFas5.chr6             181262338 24 - 181584905 GCTCCTGGTTCATACCGTGACCCA
i macFas5.chr6             C 0 I 1
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      263743  1 -   1764207 I
e rheMac8.chr6             179529266  0 - 180051392 C

a score=20975.000000
s hg38.chr5_KI270793v1_alt     72350 29 +    126136 C-------CCCCGGGTCATCCTGTGACCCAGACCCC
s panPan2.chr5             183056077 36 - 183735486 GCCCCCCACCCCAGTTTATCCCGTGACCCAGACCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144325 33 +    698298 CCCCCC--ACCCGGTTCATCCCGTGACCCAG-CCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572365 29 - 121039945 C-------TCCCCGTTCATCCCGTGACCCACCCCCC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262363 29 - 181584905 -------CCCCCCATTCATCCCGTGACCCAGCCGCC
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      263744 29 -   1764207 -------CCCCCCATTCATCCCGTGACCCAGCCGCC
i macNem1.NW_012012389v1   I 1 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015588  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e rheMac8.chr6             179529266  0 - 180051392 C

a score=5781.000000
s hg38.chr5_KI270793v1_alt     72379 5 +    126136 ACCCC
s panPan2.chr5             183056113 4 - 183735486 A-CCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144358 5 +    698298 ACCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572394 5 - 121039945 ACCGC
i nomLeu3.chr6             C 0 I 21
s macFas5.chr6             181262392 5 - 181584905 ACCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263773 5 -   1764207 ACCCC
i macNem1.NW_012012389v1   C 0 C 0
s saiBol1.JH378155          16015588 5 +  16417988 ACCCC
i saiBol1.JH378155         C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236 0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826 0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e rheMac8.chr6             179529266 0 - 180051392 C

a score=17234.000000
s hg38.chr5_KI270793v1_alt     72384 41 +    126136 TGGTTTATCCCGTGACCCACCCTCGGGTCATCCCGTGACCC
s panPan2.chr5             183056117 41 - 183735486 TGGTTTATCCCATGACCCACCCTCAGTTCATCCCGTGACCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144363 18 +    698298 --GTTTATCCCGTGACCCAT---------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181262397 21 - 181584905 TGGTTTATCCCGTGACCCACC--------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263778 21 -   1764207 TGGTTTATCCCGTGACCCACC--------------------
i macNem1.NW_012012389v1   C 0 C 0
s saiBol1.JH378155          16015593 26 +  16417988 AGGTTTACCCCGTGACCCACCTGCGG---------------
i saiBol1.JH378155         C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e otoGar3.GL873745           1884236  0 -   2165740 C
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572399 21 - 121039945 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e rheMac8.chr6             179529266  0 - 180051392 C

a score=1775.000000
s hg38.chr5_KI270793v1_alt     72425 10 +    126136 AGACCCCACG
s panPan2.chr5             183056158 10 - 183735486 AGACCCCACC
i panPan2.chr5             C 0 C 0
s otoGar3.GL873745           1884236 10 -   2165740 GGAGCCCACC
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015619  0 +  16417988 C
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572399 21 - 121039945 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273826  0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      263799  0 -   1764207 C
e macFas5.chr6             181262418  0 - 181584905 C
e rheMac8.chr6             179529266  0 - 180051392 C
e gorGor5.CYUI01015805v1      144381  0 +    698298 C

a score=1883.000000
s hg38.chr5_KI270793v1_alt     72435 1 +    126136 C
s panPan2.chr5             183056168 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144381 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179529266 1 - 180051392 C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262418 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263799 1 -   1764207 C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273826 1 -  16742782 C
i cerAty1.NW_012009470v1   C 0 C 0
s otoGar3.GL873745           1884246 1 -   2165740 T
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015619 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e nomLeu3.chr6             120572399 21 - 121039945 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e colAng1.NW_012118799v1      200085 427 -    514179 I

a score=4371.000000
s hg38.chr5_KI270793v1_alt     72436 2 +    126136 CT
s panPan2.chr5             183056169 2 - 183735486 CT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144382 2 +    698298 CC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572420 2 - 121039945 CT
i nomLeu3.chr6             I 21 C 0
s rheMac8.chr6             179529267 2 - 180051392 CT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262419 2 - 181584905 CT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263800 2 -   1764207 CT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273827 2 -  16742782 CT
i cerAty1.NW_012009470v1   C 0 C 0
s otoGar3.GL873745           1884247 2 -   2165740 CG
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25428705 125 -  25620257 I
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e saiBol1.JH378155          16015619 0 +  16417988 C
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e colAng1.NW_012118799v1      200085 427 -    514179 I

a score=39445.000000
s hg38.chr5_KI270793v1_alt     72438 12 +    126136 GGTTTATC--CCGT
s panPan2.chr5             183056171 12 - 183735486 GGTTTATC--CCGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144384 12 +    698298 GGTTCATC--CCGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572422 12 - 121039945 GGTTTATC--CCGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529269 12 - 180051392 GGTTTTTC--CCGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262421 12 - 181584905 GGTTTTTC--CCGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263802 12 -   1764207 GGTTTTTC--CCGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273829 12 -  16742782 GGTTTTTC--CCGT
i cerAty1.NW_012009470v1   C 0 C 0
s saiBol1.JH378155          16015619 10 +  16417988 --TTTACC--CCGC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25428830 12 -  25620257 GGTTTACC--CCAT
i aotNan1.NW_018503740v1   I 125 C 0
s otoGar3.GL873745           1884249 14 -   2165740 TGCTTATCTGCTGT
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e calJac3.chr2             203856366  0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e colAng1.NW_012118799v1      200085 427 -    514179 I

a score=2100.000000
s hg38.chr5_KI270793v1_alt     72450 1 +    126136 G
s panPan2.chr5             183056183 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144396 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572434 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s saiBol1.JH378155          16015629 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25428842 1 -  25620257 G
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1884263 1 -   2165740 G
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e cerAty1.NW_012009470v1      273841 0 -  16742782 C
e colAng1.NW_012118799v1      200085 427 -    514179 I
e macNem1.NW_012012389v1      263814 0 -   1764207 C
e macFas5.chr6             181262433 0 - 181584905 C
e rheMac8.chr6             179529281 0 - 180051392 C

a score=8696.000000
s hg38.chr5_KI270793v1_alt     72451 3 +    126136 ACC
s panPan2.chr5             183056184 3 - 183735486 ACC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144397 3 +    698298 ACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572435 3 - 121039945 ACC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529281 3 - 180051392 ACT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262433 3 - 181584905 ACT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263814 3 -   1764207 ACT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273841 3 -  16742782 ACT
i cerAty1.NW_012009470v1   C 0 C 0
s saiBol1.JH378155          16015630 3 +  16417988 ATC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25428843 3 -  25620257 ACC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1884264 3 -   2165740 GTC
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e calJac3.chr2             203856366 0 + 204313951 C
e canFam3.chr34             11724719 24 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e colAng1.NW_012118799v1      200085 427 -    514179 I

a score=24058.000000
s hg38.chr5_KI270793v1_alt     72454 5 +    126136 CACCC
s panPan2.chr5             183056187 5 - 183735486 CACCC
i panPan2.chr5             C 0 I 316
s gorGor5.CYUI01015805v1      144400 5 +    698298 CACCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572438 5 - 121039945 TACCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529284 5 - 180051392 TACCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262436 5 - 181584905 TACCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263817 5 -   1764207 TACCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273844 5 -  16742782 TACCC
i cerAty1.NW_012009470v1   C 0 C 0
s saiBol1.JH378155          16015633 5 +  16417988 CATCC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25428846 5 -  25620257 CACCC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1884267 5 -   2165740 CACCC
i otoGar3.GL873745         C 0 I 2
s canFam3.chr34             11724743 5 +  42124431 CAACC
i canFam3.chr34            I 24 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e calJac3.chr2             203856366 0 + 204313951 C
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e colAng1.NW_012118799v1      200085 427 -    514179 I

a score=7036.000000
s hg38.chr5_KI270793v1_alt     72459 3 +    126136 GCA
s gorGor5.CYUI01015805v1      144405 3 +    698298 GCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572443 3 - 121039945 CCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529289 3 - 180051392 CCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262441 3 - 181584905 CCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263822 3 -   1764207 CCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273849 3 -  16742782 CCA
i cerAty1.NW_012009470v1   C 0 C 0
s saiBol1.JH378155          16015638 3 +  16417988 CCC
i saiBol1.JH378155         C 0 I 1
s aotNan1.NW_018503740v1    25428851 3 -  25620257 CCA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1884274 3 -   2165740 CCT
i otoGar3.GL873745         I 2 I 3
s canFam3.chr34             11724748 3 +  42124431 TCA
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e calJac3.chr2             203856366 0 + 204313951 C
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e colAng1.NW_012118799v1      200085 427 -    514179 I
e panPan2.chr5             183056192 316 - 183735486 I

a score=13986.000000
s hg38.chr5_KI270793v1_alt     72462 6 +    126136 GCACCA
s gorGor5.CYUI01015805v1      144408 6 +    698298 GCACCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572446 6 - 121039945 GCACCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529292 6 - 180051392 GCACTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262444 6 - 181584905 GCACTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263825 6 -   1764207 GCACTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273852 6 -  16742782 GCACTG
i cerAty1.NW_012009470v1   C 0 C 0
s calJac3.chr2             203856366 6 + 204313951 GCTCCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015642 6 +  16417988 GCTCCG
i saiBol1.JH378155         I 1 C 0
s aotNan1.NW_018503740v1    25428854 6 -  25620257 GCTCCA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1884280 5 -   2165740 GCTCA-
i otoGar3.GL873745         I 3 C 0
s canFam3.chr34             11724751 6 +  42124431 GCCTCG
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577458 29 -  91010382 I
e colAng1.NW_012118799v1      200085 427 -    514179 I
e panPan2.chr5             183056192 316 - 183735486 I

a score=107257.000000
s hg38.chr5_KI270793v1_alt     72468 24 +    126136 GCACCTCAGTGCTGCTTTTGTATT
s gorGor5.CYUI01015805v1      144414 24 +    698298 GCACCTCAGTGCTGCTTTTGTATT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572452 24 - 121039945 GCACCTCAGTGCTGCTTTTCTATT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529298 24 - 180051392 GCACCTCAGTGCTGCTTTTCTATT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262450 24 - 181584905 GCACCTCAGTGCTGCTTTTCTATT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263831 24 -   1764207 GCACCTCAGTGCTGCTTTTCTATT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273858 24 -  16742782 GCACCTCAGTGCTGCTTTTCTATT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577487 24 -  91010382 GCACCTCAGTGCTGCTTTTCTATT
i chlSab2.chr4             I 29 C 0
s calJac3.chr2             203856372 24 + 204313951 GCACCCCCGCGTGGCTCTTCTATT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015648 24 +  16417988 GCACCCCCGCGAGGCTTTCCTATT
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25428860 23 -  25620257 GCA-ACCCACGTGGCTTTTCTATT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1884285 23 -   2165740 ATGCCCCA-TGCTTCTTTTCTATT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11724757 23 +  42124431 -CCACTCTGTGTTTGTTTTCTATT
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e cebCap1.NW_016108158v1       99847 180 +    298490 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e panPan2.chr5             183056192 316 - 183735486 I

a score=500481.000000
s hg38.chr5_KI270793v1_alt     72492 74 +    126136 TATAGTCGCCTTGCTGTATGTTGAGCGTAATTTTACAATCTGCCCAAAATTCCTTTGAAGAGCAGATAGGTGTG
s gorGor5.CYUI01015805v1      144438 74 +    698298 TATAGTTGCCTTGCTGTATGTTGAGCGTAATTTTACAATCTGCCCAAAATTCCTTTGAAGAGCAGATAGGTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572476 74 - 121039945 TATAGTTGCCTTGCTGTATGTTGAGCATAATTTTACAATCTGCCCAAAATTCCTTTGAAAAGCAGATAGGTGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529322 74 - 180051392 TATAGTTGCCTTGTTGTAAGTTGAGCATAATTTTACAATCTACCCAAAATTCCTTTGAAAAGCAGATAGGTGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262474 74 - 181584905 TATAGTTGCCTTGTTGTAAGTTGAGCATAATTTTACAATCTACCCAAAATTCCTTTGAAAAGCAGATAGGTGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263855 74 -   1764207 TATAGTTGCCTTGTTGTAAGTTGAGCATAATTTTACAATCTACCCAAAATTCCTTTGAAAAGCAGATAGGTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273882 74 -  16742782 TATAGTTGCCTTGTTGTAAGTTTAGCATAATTTTACAATCTACCCAAAATTCCTTTGAAAAGCAGATAGGTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577511 70 -  91010382 TATAGTTGCCTTGTTGTAAGTTGAGCATAATTTTACAATCT----AAAATTCCTTTGAAAAGCAGATAGGTGTG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203856396 74 + 204313951 TATAGTTGCCTTGCTGTGTGCTGAGTGCAATTTTACAGTCAGCCCAAAATTCCTTTGAAAAACAGACAGGTGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015672 74 +  16417988 TATGGTTGCCTCGCTGTCTGTGGAGCGCAGTTTTACAATCAGCACAGAACTCCTTTGAAAAGCAGATAGGTGTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      100027 74 +    298490 TATAGTTGCCTTGCTGTATGTTGAGCGCAATTTTACAATCGGCCCAAAATTCCTTTGAAAAGCAGATAGGTGTG
i cebCap1.NW_016108158v1   I 180 C 0
s aotNan1.NW_018503740v1    25428883 74 -  25620257 TATAGTTGCCTTGCTGTATGTTGAGCGCACTTTTACAATCGGCCCAGAATTCCTTTGAAAAGCAGATAGGTGTG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1884308 74 -   2165740 TATAGTTGTCTTGTTCTATGTTGAGCATGATTTTATAATCTGCCCGAAATTCCTTTGGGAAATAGATAGGTGTG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11724780 74 +  42124431 TATGGTAGTCTTTTTCCGTGTTCAGCATAATCTTATAAGCCGCCCGAAATTCCTTTGGGAAGCAGATAGGGGTG
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200085 427 -    514179 I
e panPan2.chr5             183056192 316 - 183735486 I

a score=596752.000000
s hg38.chr5_KI270793v1_alt     72566 73 +    126136 TACACCCTAAATGAATAAAATACAGTGCGATTTGGTGAAAGGTAACGGCTCGTTTATTTTCCTTGCCATAAAA
s gorGor5.CYUI01015805v1      144512 73 +    698298 TACACCCTAAATGAATAAAATACAGTGCGATTTGGTGAAAGGTAACGGCTCGTTTATTTTCCTTGCCATAAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572550 73 - 121039945 TACACCCTAAATGAATAAAATACATTGCGATTTGGTGAAAGATAACGGCTCGTTTATTTTCCTTGCCATAAAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529396 73 - 180051392 TACACCCTAAATGAATAAAATACAGTGCGATTTGGTGAAAGGTAATGGCTCGTTTATTTTCCTTGCCATAAAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262548 73 - 181584905 TACACCCTAAATGAATAAAATACAGTGCGATTTGGTGAAAGGTAATGGCTCGTTTATTTTCCTTGCCATAAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      263929 73 -   1764207 TACACCCTAAATGAATAAAATACAGTGCGATTTGGTGAAAGGTAATGGCTCGTTTATTTTCCTTGCCATAAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      273956 72 -  16742782 TACACCCTAAATGAATAAAATACAGTGCGATTTGGTGAAAGGTAAT-GCTCTTTTATTTTCCTTGCCATAAAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577581 73 -  91010382 TACACCCTAAATGAATAAAATACAGTGCGATTTGGTGAAAGGTAATGGCTCGTTTATTTTCCTTGCCATAAAA
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200512 73 -    514179 TACACCCTAAATGAATAAAACACAGTGCGATTTGGTGAAAGGTAATGGCTTGTTTATTTTCCTTGCCATAAAA
i colAng1.NW_012118799v1   I 427 C 0
s calJac3.chr2             203856470 73 + 204313951 TACGCCCTAAAGGAATAAAATGCAGTGTGATTTGGTGAAAGGTAACGGCTCATTTATCTTCCTTGTCATAAAA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015746 73 +  16417988 TACGCCCTAAAGGAATAAAATGCAGTGCGATTTGGTGAAAGGTAACGGCTCATTCATCTTCCTCGTCATAAAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      100101 73 +    298490 TACGCCCTGAAGGAATAAAATGCAGTGCAATTTGGTGAAAGGTAACGGCTCATTTATCTTCCTTGTCATAAAA
i cebCap1.NW_016108158v1   C 0 I 53
s aotNan1.NW_018503740v1    25428957 73 -  25620257 TACGCCCTAAAGGAATAAAACGCAGTGCGATTTGGTGAAAGGTACCGGCACATTTATCTTCCTTGTCATAAAA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1884382 73 -   2165740 TACACCCTAAATGAATAAAATACAGTGTGATTTGGTGAAAGGTAATGGCTGGTTTATTTCCCTTGTCATAAAA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11724854 70 +  42124431 TATA-CCTAAATAAATAAAACGGAGTG--GTTTGGTGAAAGGTAACGGCTGGTTTATGTCCCTCGTCGTAAAC
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e panPan2.chr5             183056192 316 - 183735486 I

a score=208740.000000
s hg38.chr5_KI270793v1_alt     72639 49 +    126136 ATGCTACAATCACCCTGAAGGTGAACCTGGCAAGCGGCA----TAGGGGCCAG
s gorGor5.CYUI01015805v1      144585 48 +    698298 ATGCTACAATCACCCTGAATGTGAACCTGG-AAGCGGCA----TAGTGGCCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572623 49 - 121039945 ATGCTACAATCACCCTGAATGTGAACCTGGCAAGCGGCA----TATGGGGCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529469 49 - 180051392 ATGCTACAATCACCTTGAGTGTAAACCTGGCAAGCAGCT----TACGGGGCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262621 49 - 181584905 ATGCTACAATCACCCTGAGTGTAAACCTGGCAAGCAGCT----TACGGGGCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264002 49 -   1764207 ATGCTACAATCACCCTGAGTGTAAACCTGGCAAGCAGCT----TACGGGGCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274028 49 -  16742782 ATGCTACAATCACCCTGAGTGTAAACCTGGCAAGCAGCT----TACGGGGCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577654 49 -  91010382 ATGCTACAATCACCCTGAGTGTAAACCTGGCAAGCAGCT----TACGGGGCAG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200585 43 -    514179 ATGCTACAA------TGAGTGTAAACCTGGCAAGCAGCT----TACAGGGCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856543 49 + 204313951 ACGGTGCAATTGCCCTGAGAATAGAGCTGGTAAGTAGCA----CACGCGGCAG
i calJac3.chr2             C 0 I 4
s saiBol1.JH378155          16015819 48 +  16417988 ACGCTGCAATTGCCCC-AGTGTAGACCTGGCACGCAGCA----CAGGCAGCCA
i saiBol1.JH378155         C 0 I 4
s aotNan1.NW_018503740v1    25429030 48 -  25620257 ACGCTGCGATTGCCCTGAGTATAGACCCGGCAAGCAGCA----CACGC-GCAA
i aotNan1.NW_018503740v1   C 0 I 4
s otoGar3.GL873745           1884455 48 -   2165740 ATGTTACTGTCATCCCTGGCAAAAGCTTGACA-GCAGCA----TATCTGGTGG
i otoGar3.GL873745         C 0 I 3
s canFam3.chr34             11724924 53 +  42124431 ACACCGTGATAATGCTGAATGAAAACTCGGCCAGCAGCAGCTTTGCGTACCGA
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e cebCap1.NW_016108158v1      100174 53 +    298490 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e panPan2.chr5             183056192 316 - 183735486 I

a score=157813.000000
s hg38.chr5_KI270793v1_alt     72688 33 +    126136 --------------GGCCTCACTCGGCTCTCCTGTGC--ACCCCGCCCC
s gorGor5.CYUI01015805v1      144633 33 +    698298 --------------GGCCTCACGCGGCTCTCCTGTGC--ACTCCGCCCC
i gorGor5.CYUI01015805v1   C 0 I 1
s nomLeu3.chr6             120572672 33 - 121039945 --------------GGCCTCACTCGGCTCTCCTGTGC--ACTACGACCC
i nomLeu3.chr6             C 0 I 1
s rheMac8.chr6             179529518 33 - 180051392 --------------GGCCTCATTCGGCTCTCTGGTGC--ACTCCGCTCC
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181262670 33 - 181584905 --------------GGCCTCACTCGGCTCTCTGGTGC--ACTCCGCTCC
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      264051 33 -   1764207 --------------GGCCTCACTCGGCTCTCCCGTGC--ACTCCGCTCC
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      274077 33 -  16742782 --------------GGCCTCACTCGGCTCTCCTGTGC--ACTCCGCTCC
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90577703 33 -  91010382 --------------GGCCTCACTCGGCTCTCCTGTGC--ACTCCGCTCC
i chlSab2.chr4             C 0 I 1
s colAng1.NW_012118799v1      200628 33 -    514179 --------------CGCCTCACTTGGCTCTCCTGTGC--ACTCCGCCCC
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203856596 33 + 204313951 --------------GGCCTCACCCGGCTCTCCTGCGT--GCTCTGCCGG
i calJac3.chr2             I 4 C 0
s saiBol1.JH378155          16015871 32 +  16417988 --------------GGCCTCGCCCGGCTCTCCGGCGC--GCTCCGCC-G
i saiBol1.JH378155         I 4 C 0
s cebCap1.NW_016108158v1      100227 33 +    298490 --------------GGCCTCACCCGGCTCTCCGGCGC--GCTCTGCCGG
i cebCap1.NW_016108158v1   I 53 C 0
s aotNan1.NW_018503740v1    25429082 33 -  25620257 --------------GGCGTCACCGGCCTCTCCTGCGC--GCTCTGCCGG
i aotNan1.NW_018503740v1   I 4 C 0
s otoGar3.GL873745           1884506 34 -   2165740 --------------CACCTCCCCTGCCCATCAGATACGGGCCCTGCTT-
i otoGar3.GL873745         I 3 C 0
s canFam3.chr34             11724977 44 +  42124431 GGCACCTTGCCGCCGGTCTCTCCCTGCCTTCAGAGCT--TTCCTGC---
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e panPan2.chr5             183056192 316 - 183735486 I

a score=1407343.000000
s hg38.chr5_KI270793v1_alt     72721 181 +    126136 GGTGTGATGTTTGGAGATTTGCATACGAGGCTCTCAGCCAGGAAGGAAATGGCCAGGAATCCCAGAAC--GCGGCACTGATTTTCCCCATGTTATCTGACTCCTGATATTCCCC---GAA-CTGTGTGACCACTGCCTGTAGTTCAGTCTGTAA-TCAAATACTTTGTAAAGACTGTACAAGTGATCC
s panPan2.chr5             183056508 181 - 183735486 GGTGTGATGTTTGGAGATTTGCATACGAGGCTCTCAGCCAGGAAGGAAATGGCCAGGAATCCCAGAAC--GCGGCACTGATTTTCCCCATGTTATCTGACTCCTGATATTCCCC---GAA-CTGTGTGACCACTGCCTGTAGTTCAGTCTGTAA-TCAAATACTTTGTAAAGACTGTACAAGTGATCC
i panPan2.chr5             I 316 C 0
s gorGor5.CYUI01015805v1      144667 181 +    698298 GGTGTGATGTTTGGAGATTTGCATACGAGGCTCTCAGCCAGGAAGGAAATGGCCAGGGATCCCAGAAC--GCGGCACTGATTTTCCCCATGTTATCTGACTCCTGATATTCCCC---GAA-CTGTGTGACCACTGCCTGTAGTTCAGTCTGTAA-TCAAATACTTTGTAAAGACTGTACAAGTGATCC
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6             120572706 181 - 121039945 GGTGTGATGTTTGGAGATTTGCATACGAGGCTCTCAGCCAGGAAGGAAATGGCCAGGAATCCCAGAAC--GCGGCACTGATTTTCCCCATGTTATCTGACTCCCGATATTCCCC---GAA-CTGTGTGACCACTGCCTGTAGTTCAGTCTGTAA-TCAAATACTTTGTAAAGACTGTACAAGTGATCC
i nomLeu3.chr6             I 1 C 0
s rheMac8.chr6             179529552 181 - 180051392 GGTGTGATGTTTGGAGATTTGCATACGAGGCTCTCAGCCAGGAAGGAAATGACCAGGAATCCCTGAAT--GTGGCACCGATTTTCCCCATGTTATCTGACTCCTGATATTCCCT---GAA-CCGTGTGACCACTGCTTGTAGTTCAGTCTGTAA-TCAAATACTTTGTAAAGACTGTCCAAGTGATCC
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181262704 181 - 181584905 GGTGTGATGTTTGGAGATTTGCATACGAGGCTCTCAGCCAGGAAGGAAATGACCAGGAATCCCTGAAT--GTGGCACCGATTTTCCCCATGTTATCTGACTCCTAATATTCCCT---GAA-CTGTGTGACCACTGCTTGTAGTTCAGTCTGTAA-TCAAATACTTTGTAAAGACTGTCCAAGTGATCC
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      264085 181 -   1764207 GGTGTGATGTTTGGAGATTTGCATACGAGGCTCTCAGCCAGGAAGGAAATGACCAGGAATCCCTGAAT--GTGGCACCGATTTTCCCCATGTTATCTGACTCCTGATATTCCCT---GAA-CTGTGTGACCACTGCTTGTAGTTCAGTCTGTAA-TCAAATACTTTGTAAAGACTGTCCAAGTGATCC
i macNem1.NW_012012389v1   I 1 C 0
s cerAty1.NW_012009470v1      274111 181 -  16742782 GGTGTCATGTTTGGAGATTTGCATACAAGGCTCTCAGCCAGGAAGGAAATGGCCAGGAATCCCTGAAT--GCGGCACTGATTTTCCCCATGTTGTCTGACTCCTGATATTCCCT---GAA-CTGTGTGACCACTGCCTGTAGTTCAGTCTGTAA-TCAAATACTTTGTAAAGACTGTCCAAGTGATCC
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90577737 181 -  91010382 GGTGTGATGTTTGGAGATTTGCATACGAGGCTCTCAGCCAGGAAGGAAATGACCAGGAATCCCTGAAT--GCGGCACTGATTTTCCCCATGTTATCTGACTCCTGATATTCCCT---GAA-CTGTGTGACCACTGCCTGTAGTTCAGTCTGTAA-TCAAATACTTTGTAAAGACTGTCCAAGTGATCC
i chlSab2.chr4             I 1 C 0
s colAng1.NW_012118799v1      200662 181 -    514179 GGTGTGATGTTTGGAGATTTGCATACGAGGCTCTCAGCCAGGAAGGAAATGGCCAGGAATCCCAGAAT--GCGGCACCGATTTTCCCCATGTTATCTGACTCCTCATATTCCCT---GAA-CTGTGTGACCACTGCCTGTAGTTCAGTCTGTAA-TCAAATACTTTGTAAAGACTGTCCAAGTGATCC
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203856629 177 + 204313951 GGTG-CAGCGTTGGAGATTTGCATACCAGGCTCTCAGCCAGGAAGGAAACGGCCATTGATCCCAGAGC--GCGGCACTGATTTTCCC--TGTTATCTAACTCCTGATATTCCCC---TGG-CCGTGTGGCCACAGCCTGTAGCTCAGTCTGTAA-TCAAATACTTTGCATAGACTGTTCAGGTGAT-C
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16015903 178 +  16417988 GGTG-GATGGCTGGAGATTTGCATACCAGGCTCTCAGCCAGGAAGGAAACCGCCATCGATCCCAAAGC--GCGGCACTGATTTTCCCCACGTTATCTAACTCCTGATATTCCCC---TGA-CTGTGTGGCCACGGCCTGCAGTTCAGTCTGTAA-TCAA--ACTTTGTGTAGACTGTCCGAGTGATCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      100260 180 +    298490 GGTG-GATGGTTGGAGATTTGCATACCAGGCTCGCAGCCAGGAAGGAAATGGCCATTGATCCCAGAGC--GCGGCACTGATTTTCCCCACGTTATCTAACTCCTGACATTCCCC---TGG-CTGTGTGGCCACAGCCTGTAGCTCAGTCTGTAA-TCAAATACTTTGTGTAGACTGGCCAAGTGATCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25429115 165 -  25620257 GGCG-GATGGCTGGAGATTTGCATACCAGGCTCTCAGACAGGCAGGAAGCGGCCACTGATCCCAGAGC--ATGGCACTGATTCTCCT--------------CCTGATA-TCCCC---TGG-CTGTGTGGCCACAGCCTGCAGGTCAGTCTGTAA-TCAAATACTTTGTATGGACGGTCCAAGTGATCC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1884540 178 -   2165740 GAGGAAATGTTTGGTGATTTGCATACCAGGCTCCAAG---GGAAGGAAATGTCTAGAAGTGACAGGGC--CAGGCAGTGATGTCCCTTGTGTTAGATGATTTTT-ATTTCCTTT---GAATCTGTAGGGCCACTGTCTGTAGCTCAGTTTGTAAGGCAAATGCTTT-TAAAGACTACCCAAGTAATCC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11725021 184 +  42124431 AAAGAACTGTCGGGTGACTTGCATGGGAGACTCCAAACTAGGGAAGGCACAGCTAGAAATAACAGAACTAGCAGCACCCCCCGCCCCC-CATTAGCTGATTCCTGATGTTGCCTTTGGGC-ATTTGTGGCCCGTACCGGTAGCTCCGCCTGTAA-ACAC-TGCCCGGTGAAGGCCGTCCAGCTGCCCC
i canFam3.chr34            C 0 I 204
e panTro5.chr5             181334326 5343 - 181907262 M
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=123884.000000
s hg38.chr5_KI270793v1_alt     72902 15 +    126136 CAGACCCAAAAGGAA
s panPan2.chr5             183056689 15 - 183735486 CAGACCCAAAAGGAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144848 15 +    698298 CAGACCCAAAAAGAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572887 15 - 121039945 CAGACCCAAAAGGAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529733 15 - 180051392 CAGATCCAAAAGGAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262885 15 - 181584905 CAGATCCAAAAGGAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264266 15 -   1764207 CAGATCCAAAAGGAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274292 15 -  16742782 CAGATCCAAAAGGAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577918 15 -  91010382 CAGATCCAAAAGGAA
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200843 15 -    514179 CAGATCCAAAAGAAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856806 15 + 204313951 CAGACCCAAACGGAA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16016081 15 +  16417988 CAGACCCGAAAGGAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      100440 15 +    298490 CAGGCCCGAAAGGAA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25429280 15 -  25620257 CAGACCCTAAAGGAA
i aotNan1.NW_018503740v1   C 0 I 157
s otoGar3.GL873745           1884718 15 -   2165740 CAGACACAAAAGGAG
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=139645.000000
s hg38.chr5_KI270793v1_alt     72917 21 +    126136 AC--GTCAGAAATGCGAGGCTGT
s panPan2.chr5             183056704 23 - 183735486 ACTTGTCAGAAATGCGAGGCTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144863 23 +    698298 ACTTGTCAGAAATGCGAGGCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572902 23 - 121039945 ACTTGTCAGAAATGCGAGGCTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529748 23 - 180051392 ACTTGTCAGAAATGCGAGGCCGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262900 23 - 181584905 ACTTGTCAGAAATGCGAGGCCGT
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      264281 23 -   1764207 ACTTGTCAGAAATGCGAGGCCGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274307 23 -  16742782 ACTTGTCAGAAATGCGAGGCCGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577933 23 -  91010382 ACTTGTCAGAAATGCGAGGCCGT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200858 23 -    514179 ACTTGTCAGAAATGCAAGGCCGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856821 23 + 204313951 GCTTCTCGAAAATGCGAGACTGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16016096 23 +  16417988 GTGTCTCAAAAGTGTGAGGGTGT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      100455 23 +    298490 GCTTCTCGAAAATGTGAGGCTGT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1884733 23 -   2165740 ACTTATTAGAAAGACAGGACTGT
i otoGar3.GL873745         C 0 I 174
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=1135.000000
s hg38.chr5_KI270793v1_alt     72938 1 +    126136 A
s panPan2.chr5             183056727 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144886 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572925 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529771 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      264304 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274330 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577956 1 -  91010382 G
i chlSab2.chr4             C 0 I 1
s colAng1.NW_012118799v1      200881 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16016119 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100478 0 +    298490 C
e calJac3.chr2             203856844 0 + 204313951 C
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e macFas5.chr6             181262923 1 - 181584905 I

a score=44341.000000
s hg38.chr5_KI270793v1_alt     72939 10 +    126136 GGCTTGTTAG
s panPan2.chr5             183056728 10 - 183735486 GGCTTGTTAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144887 10 +    698298 GGCTTGTTAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572926 10 - 121039945 GGCTTGTTAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529772 10 - 180051392 GATTTGTTAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262924 10 - 181584905 GATTTGTTAG
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      264305 10 -   1764207 GATTTGTTAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274331 10 -  16742782 GATTTGTTAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90577958 10 -  91010382 ATTTTGTTAG
i chlSab2.chr4             I 1 C 0
s colAng1.NW_012118799v1      200882 10 -    514179 GATTTGTTAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856844 10 + 204313951 GGCTGGTTAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16016120  8 +  16417988 -GGTGG-TAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      100478 10 +    298490 GGCTGGTTAG
i cebCap1.NW_016108158v1   C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=18293.000000
s hg38.chr5_KI270793v1_alt     72949 4 +    126136 AGAT
s panPan2.chr5             183056738 4 - 183735486 AGAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144897 4 +    698298 AGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572936 4 - 121039945 ACAC
i nomLeu3.chr6             C 0 I 25
s rheMac8.chr6             179529782 4 - 180051392 AGAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262934 4 - 181584905 AGAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264315 4 -   1764207 AGAT
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90577968 4 -  91010382 AGAT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200892 4 -    514179 AGAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856854 4 + 204313951 AGAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16016128 4 +  16417988 AGAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      100488 4 +    298490 AGAC
i cebCap1.NW_016108158v1   C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274341 0 -  16742782 C

a score=10520.000000
s hg38.chr5_KI270793v1_alt     72953 3 +    126136 GGG
s panPan2.chr5             183056742 3 - 183735486 GTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144901 3 +    698298 GGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572965 3 - 121039945 GGG
i nomLeu3.chr6             I 25 C 0
s rheMac8.chr6             179529786 3 - 180051392 GTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181262938 3 - 181584905 GTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264319 3 -   1764207 GTG
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90577972 3 -  91010382 GTG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200896 3 -    514179 GTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856858 3 + 204313951 AGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16016132 3 +  16417988 GGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      100492 3 +    298490 GGG
i cebCap1.NW_016108158v1   C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274341 0 -  16742782 C

a score=4095.000000
s hg38.chr5_KI270793v1_alt     72956 1 +    126136 A
s panPan2.chr5             183056745 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144904 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572968 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262941 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90577975 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200899 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856861 1 + 204313951 A
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16016135 1 +  16417988 A
i saiBol1.JH378155         C 0 M 1829
s cebCap1.NW_016108158v1      100495 1 +    298490 A
i cebCap1.NW_016108158v1   C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e macNem1.NW_012012389v1      264322 0 -   1764207 C
e rheMac8.chr6             179529789 0 - 180051392 C

a score=5012.000000
s hg38.chr5_KI270793v1_alt     72957 3 +    126136 GGC
s panPan2.chr5             183056746 3 - 183735486 GGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144905 3 +    698298 GGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572969 3 - 121039945 GGC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262942 3 - 181584905 GGC
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90577976 3 -  91010382 GGC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200900 3 -    514179 CGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856862 3 + 204313951 CGC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      100496 3 +    298490 GGC
i cebCap1.NW_016108158v1   C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e macNem1.NW_012012389v1      264322 0 -   1764207 C
e rheMac8.chr6             179529789 0 - 180051392 C

a score=-2634.000000
s hg38.chr5_KI270793v1_alt     72960 3 +    126136 TGT-
s panPan2.chr5             183056749 2 - 183735486 TG--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144908 2 +    698298 TG--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572972 2 - 121039945 TG--
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203856865 3 + 204313951 TG-T
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      100499 3 +    298490 TG-T
i cebCap1.NW_016108158v1   C 0 I 1232
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577979 0 -  91010382 C
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200903 0 -    514179 C
e macNem1.NW_012012389v1      264322 0 -   1764207 C
e macFas5.chr6             181262945 0 - 181584905 C
e rheMac8.chr6             179529789 0 - 180051392 C

a score=-1373.000000
s hg38.chr5_KI270793v1_alt     72963 5 +    126136 TAGGT
s panPan2.chr5             183056751 5 - 183735486 TAGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      144910 5 +    698298 TAGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572974 5 - 121039945 TGGGT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262945 1 - 181584905 T----
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203856868 2 + 204313951 --GG-
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90577979 0 -  91010382 C
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200903 0 -    514179 C
e macNem1.NW_012012389v1      264322 0 -   1764207 C
e rheMac8.chr6             179529789 0 - 180051392 C

a score=78512.000000
s hg38.chr5_KI270793v1_alt     72968 38 +    126136 TTGTTAGAGAAGGGAGGCTGTAGGTTTGTTAGAGATGG
s panPan2.chr5             183056756 38 - 183735486 TTGTTAGAGAAGGGAGGCTGTAGGCTTGTTAGAGATGG
i panPan2.chr5             C 0 T 88
s gorGor5.CYUI01015805v1      144915 38 +    698298 CTGTTAGAGAAGGGAGGTTGTAGGTTTCTTAGAGATGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572979 38 - 121039945 TTCTTAGAGATGGGAGGCTGTAGGCTTGTTAGAGATGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262946 37 - 181584905 -TGTTAGAGATGGGAGGCTGTAGGCCTGTTAGAGATGG
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90577979 38 -  91010382 TTGTTAGAGATGGGAGCCTGTAGGCTTGTTAGAGATGG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200903 38 -    514179 TTGTTAGAAATGTGAGGTTGTAGGCTTGTTAGAGATGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203856870 35 + 204313951 --GTTAGAGATGGGAGGCTGT-GGCTGGTTAGAGATGG
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e macNem1.NW_012012389v1      264322  0 -   1764207 C
e rheMac8.chr6             179529789  0 - 180051392 C

a score=6213.000000
s hg38.chr5_KI270793v1_alt     73006 8 +    126136 GAGGCTGT-
s gorGor5.CYUI01015805v1      144953 7 +    698298 GAGGCTG--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573017 7 - 121039945 GAGGCTG--
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262983 7 - 181584905 GAGGTTG--
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90578017 7 -  91010382 GAGGTTG--
i chlSab2.chr4             C 0 I 6
s colAng1.NW_012118799v1      200941 7 -    514179 GAGGTTG--
i colAng1.NW_012118799v1   C 0 I 12
s calJac3.chr2             203856905 8 + 204313951 CAGGCTG-T
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e macNem1.NW_012012389v1      264322 0 -   1764207 C
e rheMac8.chr6             179529789 0 - 180051392 C
e panPan2.chr5             183056794 88 - 183735486 T

a score=5689.000000
s hg38.chr5_KI270793v1_alt     73014 12 +    126136 TAGGTTTGTTAG
s gorGor5.CYUI01015805v1      144960 12 +    698298 TAGGTTTCTTAG
i gorGor5.CYUI01015805v1   C 0 T 21
s nomLeu3.chr6             120573024 12 - 121039945 TAGGCTTGTTAG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262990 12 - 181584905 TGTGCCTGTTGG
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203856913 10 + 204313951 --GGCTGGTTAG
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1      264322  0 -   1764207 C
e rheMac8.chr6             179529789  0 - 180051392 C
e panPan2.chr5             183056794 88 - 183735486 T

a score=4634.000000
s hg38.chr5_KI270793v1_alt     73026 14 +    126136 AGAAGGGAGGCTGC
s nomLeu3.chr6             120573036 14 - 121039945 AGAAGGGAGGCTGT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263002 14 - 181584905 AGATGGGAGGCTGT
i macFas5.chr6             C 0 I 19
s calJac3.chr2             203856923 13 + 204313951 AGACGGGACGCTG-
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1      264322  0 -   1764207 C
e rheMac8.chr6             179529789  0 - 180051392 C
e gorGor5.CYUI01015805v1      144972 21 +    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=2206.000000
s hg38.chr5_KI270793v1_alt     73040 15 +    126136 CTTCTTGTTAGAGAT
s nomLeu3.chr6             120573050 15 - 121039945 AGGCTTGTTAGAGAT
i nomLeu3.chr6             C 0 T 83
s calJac3.chr2             203856936 15 + 204313951 TGGCTGGTTAGAGAC
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1      264322  0 -   1764207 C
e macFas5.chr6             181263016 19 - 181584905 I
e rheMac8.chr6             179529789  0 - 180051392 C
e gorGor5.CYUI01015805v1      144972 21 +    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=75.000000
s hg38.chr5_KI270793v1_alt     73055 3 +    126136 GGC
s calJac3.chr2             203856951 3 + 204313951 GGG
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573065 83 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1      264322 0 -   1764207 C
e macFas5.chr6             181263016 19 - 181584905 I
e rheMac8.chr6             179529789 0 - 180051392 C
e gorGor5.CYUI01015805v1      144972 21 +    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=123.000000
s hg38.chr5_KI270793v1_alt     73058 2 +    126136 AG
s macFas5.chr6                321448 2 + 181584905 AG
i macFas5.chr6             n 19 C 0
s calJac3.chr2             203856954 2 + 204313951 AC
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573065 83 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1      264322 0 -   1764207 C
e rheMac8.chr6             179529789 0 - 180051392 C
e gorGor5.CYUI01015805v1      144972 21 +    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=2010.000000
s hg38.chr5_KI270793v1_alt     73060 3 +    126136 GCT
s nomLeu3.chr6                466842 3 + 121039945 GCT
i nomLeu3.chr6             n 83 C 0
s rheMac8.chr6                521064 3 + 180051392 GCT
i rheMac8.chr6             n 0 C 0
s macFas5.chr6                321450 3 + 181584905 CCT
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203856956 3 + 204313951 GCT
i calJac3.chr2             C 0 T 115
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1      264322 0 -   1764207 C
e gorGor5.CYUI01015805v1      144972 21 +    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=1872.000000
s hg38.chr5_KI270793v1_alt     73063 4 +    126136 ACAG
s nomLeu3.chr6                466845 4 + 121039945 ACAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6                521067 4 + 180051392 ACAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6                321453 4 + 181584905 ACAA
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1      264322 0 -   1764207 C
e gorGor5.CYUI01015805v1      144972 21 +    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=17409.000000
s hg38.chr5_KI270793v1_alt     73067 22 +    126136 CCTCCCATCTCTAACAAACCTA
s gorGor5.CYUI01015805v1      552904 22 -    698298 CCTCCCATCTCTAACAAGCCTA
i gorGor5.CYUI01015805v1   n 21 C 0
s nomLeu3.chr6                466849 22 + 121039945 CCTCACATCTCTAACAGGCCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6                521071 22 + 180051392 CCTCACATCTCTAACAAGCCTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6                321457 22 + 181584905 CCTCGTATCTCTAACAAGCCTA
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1      264322  0 -   1764207 C
e panPan2.chr5             183056794 88 - 183735486 T

a score=20787.000000
s hg38.chr5_KI270793v1_alt     73089 23 +    126136 ACAGCCTCCCATCTCTAACAAA--C
s gorGor5.CYUI01015805v1      552926 24 -    698298 -CAGCCTCCCATCTCTAACCAAGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466871 22 + 121039945 -CAACCTCATATCTCTAACAAG--C
i nomLeu3.chr6             C 0 T 50
s rheMac8.chr6                521093 22 + 180051392 -CAACCTCGTATCTCTAACAAG--C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6                321479 22 + 181584905 -CAGCCTCACATCTCTAAGAAG--T
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1498504 23 +   1764207 ACAGCCTCGCATCTCTAACAAA--C
i macNem1.NW_012012389v1   n 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=6943.000000
s hg38.chr5_KI270793v1_alt     73112 7 +    126136 CTACAGC
s gorGor5.CYUI01015805v1      552950 7 -    698298 CTACAGC
i gorGor5.CYUI01015805v1   C 0 I 3
s nomLeu3.chr6                466843 7 + 121039945 CTACAAC
i nomLeu3.chr6             T 50 C 0
s rheMac8.chr6                521115 7 + 180051392 CTACAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6                321501 7 + 181584905 GTACAGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1498527 7 +   1764207 ATGCAGC
i macNem1.NW_012012389v1   C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=16789.000000
s hg38.chr5_KI270793v1_alt     73119 13 +    126136 CTCCCATCTCTAA
s gorGor5.CYUI01015805v1      552960 13 -    698298 CTCCCATCTCTAA
i gorGor5.CYUI01015805v1   I 3 C 0
s nomLeu3.chr6                466850 13 + 121039945 CTCACATCTCTAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6                521122 13 + 180051392 CTCACATCTCTAA
i rheMac8.chr6             C 0 n 0
s macFas5.chr6                321508 13 + 181584905 CTCACATCTCTAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1498534 13 +   1764207 CTCACATCTCTAA
i macNem1.NW_012012389v1   C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=-4228.000000
s hg38.chr5_KI270793v1_alt     73132 3 +    126136 CA-A-
s gorGor5.CYUI01015805v1      552973 4 -    698298 CACA-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466863 2 + 121039945 C--A-
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                321521 3 + 181584905 --CAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1498547 3 +   1764207 --CAA
i macNem1.NW_012012389v1   C 0 I 186
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=-40.000000
s hg38.chr5_KI270793v1_alt     73135 6 +    126136 ACCTAA
s gorGor5.CYUI01015805v1      552977 6 -    698298 AGCCTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466865 6 + 121039945 GGCCCA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                321524 5 + 181584905 -GTGTA
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498550 186 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=24165.000000
s hg38.chr5_KI270793v1_alt     73141 35 +    126136 CAG-CCTCCCATCTCTAACAAACCTACAGCCTCCCT
s gorGor5.CYUI01015805v1      552983 36 -    698298 CAGACCTCCCATCTCTAACAAGCCTACAGCCTCCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466871 35 + 121039945 CAA-CCTCATATCTCTAACAAGCCTACAGCCTCCCT
i nomLeu3.chr6             C 0 I 75
s macFas5.chr6                321529 35 + 181584905 CAG-CCTCACATCTCTAACAAACATGCAGCCTCACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1498736 35 +   1764207 CAG-CCTCACATCTCTAACAAACATGCAGCCTCACA
i macNem1.NW_012012389v1   I 186 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=9370.000000
s hg38.chr5_KI270793v1_alt     73176 10 +    126136 TCTCTAACAA
s gorGor5.CYUI01015805v1      553019 10 -    698298 TCTCTAACAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466981 10 + 121039945 TCTCTAACAA
i nomLeu3.chr6             I 75 C 0
s macFas5.chr6                321564 10 + 181584905 TCTCTAACAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1498771 10 +   1764207 TCTCTAACAA
i macNem1.NW_012012389v1   C 0 I 911
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=1182.000000
s hg38.chr5_KI270793v1_alt     73186 6 +    126136 ACCTAA
s gorGor5.CYUI01015805v1      553029 5 -    698298 ACCTA-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466991 5 + 121039945 ACCTA-
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                321574 5 + 181584905 GCCTA-
i macFas5.chr6             C 0 I 50
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=13505.000000
s hg38.chr5_KI270793v1_alt     73192 35 +    126136 CAGCCTCCCATCTCTAATAAACCTAACAGCCTCCC
s gorGor5.CYUI01015805v1      553034 34 -    698298 CAGCCTCCCATCTCTAACAAGCCTA-CAGCCTCCC
i gorGor5.CYUI01015805v1   C 0 T 234
s nomLeu3.chr6                466996 34 + 121039945 CAGCCTCACGTGTCTAACAAGCCTA-CAGCCTCGC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                321629 34 + 181584905 CAGCCTCACATCTCTAACAAACATG-CAGCCTCAC
i macFas5.chr6             I 50 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=1430.000000
s hg38.chr5_KI270793v1_alt     73227 6 +    126136 ATCTCT
s nomLeu3.chr6                467030 6 + 121039945 ATTTCT
i nomLeu3.chr6             C 0 T 191
s macFas5.chr6                321663 6 + 181584905 ATCTCT
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=1939.000000
s hg38.chr5_KI270793v1_alt     73233 36 +    126136 CCCAAACCTAACAGCCTCCCATCTCTAACAAGCCTA
s macFas5.chr6                321669 35 + 181584905 AACAAACAT-GCAGCCTCACATCTCTAACAAGCCTA
i macFas5.chr6             C 0 T 276
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                467036 191 + 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=442.000000
s hg38.chr5_KI270793v1_alt     73269 6 +    126136 CATTTG
s macFas5.chr6             181263035 6 - 181584905 CACTTG
i macFas5.chr6             I 19 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                467036 191 + 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=10532.000000
s hg38.chr5_KI270793v1_alt     73275 42 +    126136 TTAGAGAAGGGAGGCTGTAGGTTTGTTAGAGAGGGGAGGCTG
s nomLeu3.chr6             120572982 42 - 121039945 TTAGAGATGGGAGGCTGTAGGCTTGTTAGAGATGGGAGGCTG
i nomLeu3.chr6             T 83 T 25
s macFas5.chr6             181263041 42 - 181584905 TTAGAGATGTGAGGCTGTAGGCTTGTTAGAGATGGGAGGCTG
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=91.000000
s hg38.chr5_KI270793v1_alt     73317 1 +    126136 T
s macFas5.chr6             181263083 1 - 181584905 T
i macFas5.chr6             C 0 T 161
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573024 25 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=91.000000
s hg38.chr5_KI270793v1_alt     73318 1 +    126136 T
s nomLeu3.chr6             120572999 1 - 121039945 T
i nomLeu3.chr6             T 25 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e macFas5.chr6             181263084 161 - 181584905 T
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=17953.000000
s hg38.chr5_KI270793v1_alt     73319 102 +    126136 AGGTTTGTTAGAGATGGGAGGCTGTTAGGTTTATTAGAGATGGGAGGCTGTTAGGTTTGTTAGAGAAGGGAGGCTGTAGGTTTGTTAGAGATGGCAGGCTGT
s nomLeu3.chr6             120573000 100 - 121039945 AGGCTTGTTAGAGATGGGAGGCTG-TAGGCTTGTTAGAGAAGGGAGGCTG-TAGGCTTGTTAGAGATATGAGGTTGTGGGCCTGTTAGAGATGTGAGGTTGT
i nomLeu3.chr6             C 0 T 148
s macFas5.chr6             181262923  93 - 181584905 GGATTTGTTAGAGATGTGAGGC--------TTGTTAGAGATGGGAGGCTG-TAGGCCTGTTAGAGATGGGAGGTTGTGTGCCTGTTGGAGATGGGAGGCTGT
i macFas5.chr6             T 161 I 236
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024   6 -  91010382 I
e cerAty1.NW_012009470v1      274341   0 -  16742782 C
e colAng1.NW_012118799v1      200948  12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135   0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794  88 - 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     73421 1 +    126136 T
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573100 148 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e macFas5.chr6             181263016 236 - 181584905 I
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=1360.000000
s hg38.chr5_KI270793v1_alt     73422 27 +    126136 AGGTTTGTTACACATGGGAGGCTGTAG
s macFas5.chr6             181263252 27 - 181584905 ATGTTTGTTAGAGATGTGAGGCTGCAT
i macFas5.chr6             I 236 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573100 148 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=4500.000000
s hg38.chr5_KI270793v1_alt     73449 29 +    126136 GCTCGTTACATATAGAGATGGGAGGCTGT
s nomLeu3.chr6             120572952 23 - 121039945 GTTTGTTA------GAGATGGGAGGCTGT
i nomLeu3.chr6             T 148 C 0
s macFas5.chr6             181263279 23 - 181584905 GTTTGTTA------GAGATGTGAGGCTGT
i macFas5.chr6             C 0 T 286
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     73478 1 +    126136 T
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120572975 0 - 121039945 C
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e macFas5.chr6             181263302 286 - 181584905 T
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=3553.000000
s hg38.chr5_KI270793v1_alt     73479 19 +    126136 AGGTTTATTGGAGATGGGA
s nomLeu3.chr6             120572975 19 - 121039945 GGGTTTCTTAGAGATGGGA
i nomLeu3.chr6             C 0 T 20
s macFas5.chr6             181263016 19 - 181584905 AGGCTTCTTAAAGATGTGA
i macFas5.chr6             T 286 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=38.000000
s hg38.chr5_KI270793v1_alt     73498 3 +    126136 TGC
s macFas5.chr6             181263035 3 - 181584905 CAC
i macFas5.chr6             C 0 T 123
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120572994 20 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     73501 15 +    126136 CTCACGTATAGAAGG
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120572994 20 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e macFas5.chr6             181263038 123 - 181584905 T
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=1717.000000
s hg38.chr5_KI270793v1_alt     73516 22 +    126136 GAGGCTGTAGGTTTGTTAGAGA
s macFas5.chr6             181262915 22 - 181584905 GAGGCCGTGGATTTGTTAGAGA
i macFas5.chr6             T 123 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120572994 20 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553068 234 -    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=892.000000
s hg38.chr5_KI270793v1_alt     73538 10 +    126136 GGGAGGGTGT
s gorGor5.CYUI01015805v1      144951 10 +    698298 GGGAGGCTGT
i gorGor5.CYUI01015805v1   T 21 C 0
s macFas5.chr6             181262937  3 - 181584905 -------TGT
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120572994 20 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024  6 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=1879.000000
s hg38.chr5_KI270793v1_alt     73548 6 +    126136 TAGGTT
s gorGor5.CYUI01015805v1      144961 5 +    698298 -AGGTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572974 6 - 121039945 TGGGTT
i nomLeu3.chr6             T 20 C 0
s macFas5.chr6             181262940 6 - 181584905 GAGGCT
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578024 6 -  91010382 I
e cerAty1.NW_012009470v1      274341 0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=30504.000000
s hg38.chr5_KI270793v1_alt     73554 36 +    126136 TGTTAGAGATGGGAGGCTGTAGGTTTGTTAGAGATG
s gorGor5.CYUI01015805v1      144966 36 +    698298 TCTTAGAGATGGGAGGCTGTAGGCTTGTTAGAGATG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572980 36 - 121039945 TCTTAGAGATGGGAGGCTGTAGGCTTGTTAGAGATG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262946 36 - 181584905 TGTTAGAGATGGGAGGCTGTAGGCCTGTTAGAGATG
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90578030 36 -  91010382 TGTTAGAGATGGGAGGCTGTAGGCTTCTTAAAGATG
i chlSab2.chr4             I 6 I 19
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=8233.000000
s hg38.chr5_KI270793v1_alt     73590 20 +    126136 GGAGGCTGTAGGTTTGTTAT
s gorGor5.CYUI01015805v1      145002 20 +    698298 GGAGGCTGTAGGCCTGTTAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573016 20 - 121039945 GGAGGCTGTAGGCTTGTTAG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262982 20 - 181584905 GGAGGTTGTGTGCCTGTTGG
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=2061.000000
s hg38.chr5_KI270793v1_alt     73610 40 +    126136 ATATGGGAGGCTGTAGGTTTGTT-TAGATGGGAGGGTGTGG
s gorGor5.CYUI01015805v1      145022 16 +    698298 AGATGGGAGGCTGTAG-------------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573036 41 - 121039945 AGAAGGGAGGCTGTAGGCTTGTTAGAGATATGAGGTTGTGG
i nomLeu3.chr6             C 0 T 77
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e macFas5.chr6             181263002  0 - 181584905 C
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=694.000000
s hg38.chr5_KI270793v1_alt     73650 10 +    126136 TGTTTGTTAG
s gorGor5.CYUI01015805v1      145038  9 +    698298 -GCTTGTTAG
i gorGor5.CYUI01015805v1   C 0 T 162
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573077 77 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e macFas5.chr6             181263002  0 - 181584905 C
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5             183056794 88 - 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     73660 53 +    126136 AGATGGGAGGCTGTTAGGTTTATTATTCATGGGAGGCTGTTAGAACAAACCTA
e panTro5.chr5             181334326 5343 - 181907262 M
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573077 77 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1      274341  0 -  16742782 C
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1498781 911 +   1764207 I
e macFas5.chr6             181263002  0 - 181584905 C
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      145047 162 +    698298 T
e panPan2.chr5             183056794 88 - 183735486 T

a score=19474.000000
s hg38.chr5_KI270793v1_alt     73713 12 +    126136 ACAGCCTCCCAT
s panTro5.chr5                567497 12 + 181907262 ACAACCTCCCAT
i panTro5.chr5             n 0 C 0
s panPan2.chr5                678684 12 + 183735486 ACAACCTCCCAT
i panPan2.chr5             n 88 C 0
s nomLeu3.chr6                466845 12 + 121039945 ACAACCTCACAT
i nomLeu3.chr6             T 191 C 0
s macFas5.chr6                321428 12 + 181584905 ACAACCTCACAT
i macFas5.chr6             T 276 C 0
s macNem1.NW_012012389v1     1499692 12 +   1764207 ACAGCTTCCCAT
i macNem1.NW_012012389v1   I 911 C 0
s cerAty1.NW_012009470v1    16468234 12 +  16742782 ACAACCTCACAT
i cerAty1.NW_012009470v1   n 0 C 0
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      145047 162 +    698298 T

a score=84638.000000
s hg38.chr5_KI270793v1_alt     73725 39 +    126136 CTCTAACAAGCCTACAGCCTCCCAT-CTCTAACAAGCCTA
s panTro5.chr5                567509 39 + 181907262 CTCTAACAAGCCTACAGCCTCCCTT-CTCTAACAAGCCTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5                678696 39 + 183735486 CTCTAACAAGCCTACAGCCTCCCTT-CTCTAACAAGCCTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      552834 40 -    698298 CTCTAACAGGCCTACAACCTCCCTTCCTCTAACAAGCCTA
i gorGor5.CYUI01015805v1   T 234 C 0
s nomLeu3.chr6                466857 39 + 121039945 CTCTAACAGGCCCACAACCTCATAT-CTCTAACAAGCCTA
i nomLeu3.chr6             C 0 I 50
s macFas5.chr6                321440 39 + 181584905 CTCTAACAAGCCTACAACCTCGTAT-CTCTAACAAGCCTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1499704 39 +   1764207 CTCTAACAGGCACACAACCTCCCAT-CTTTAACAAGCCTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1    16468246 39 +  16742782 CTCTAACAAGCCTACAACCTCGTAT-CTCTAACAAGCCTA
i cerAty1.NW_012009470v1   C 0 C 0
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e rheMac8.chr6                521135  0 + 180051392 I

a score=91712.000000
s hg38.chr5_KI270793v1_alt     73764 45 +    126136 CAGCCTCCC-ATCTCTAACAAACATACAG-CCTCCCATCTCTAACAA
s panTro5.chr5                567548 45 + 181907262 CAACCTCAC-ATCTCTAACAAGCCTACAG-CCTCCCATCTCTAACAA
i panTro5.chr5             C 0 T 96
s panPan2.chr5                678735 45 + 183735486 CAACCTCAC-ATCTCTAACAAGCCTACAG-CCTCGCATTTCTGACAA
i panPan2.chr5             C 0 T 96
s gorGor5.CYUI01015805v1      552874 47 -    698298 CAGCCTCCCAATCTCTAACAGGCCTACAGCCCTCCCATCTCTAACAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466946 45 + 121039945 CAGCCTCCC-ATCTCTAAGAAACCCACAG-CCTCCCATCTCTAACAA
i nomLeu3.chr6             I 50 C 0
s macFas5.chr6                321479 45 + 181584905 CAGCCTCAC-ATCTCTAAGAAGTGTACAG-CCTCACATCTCTAACAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1499743 45 +   1764207 CAGCCTCCC-ATCTCTAACAAGCCTACAG-CCTCACATCTCTAACAA
i macNem1.NW_012012389v1   C 0 I 6
s cerAty1.NW_012009470v1    16468285 45 +  16742782 CAGCCTCAC-ATCTCTAACAAGTGTACAG-CCTCACATCTCTAACAG
i cerAty1.NW_012009470v1   C 0 C 0
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e rheMac8.chr6                521135  0 + 180051392 I

a score=17380.000000
s hg38.chr5_KI270793v1_alt     73809 67 +    126136 ACCTAACAGCCTCCCATCTCTAAC-AAACCTAACAGC---CTCCCATCTCTAATATCTAAC------------------AAGCCTACAG
s gorGor5.CYUI01015805v1      552921 65 -    698298 GCCTA-CAGCCTCCCATCTCTAACCAAGCCCTACAGCTCCCTCCCATCTCTAACA-----C------------------AAGCCTACAG
i gorGor5.CYUI01015805v1   C 0 I 1
s nomLeu3.chr6                466991 33 + 121039945 ----------------------------ACCTACAGC---CTCACGTGTCTAA-------C------------------AAGCCTACAG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                321524 58 + 181584905 GTGTA-CAGCCTCACATCTCTAAC--AAACATGCAGC---CTCACATCTCTAA-------C------------------AAGCCTACAG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1    16468330 76 +  16742782 GCTTA-CAGCGTCCCATCTCTAAC--AAGCCTACAGC---CTCACATCTCTAA-------CAAGTGTCACATCTTTAAGAAGCCTACAG
i cerAty1.NW_012009470v1   C 0 C 0
e panTro5.chr5                567593 96 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499788  6 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 96 + 183735486 T

a score=7689.000000
s hg38.chr5_KI270793v1_alt     73876 17 +    126136 CCTCCCATCTCTAACAA
s nomLeu3.chr6                467024 17 + 121039945 CCTCGCATTTCTGACAA
i nomLeu3.chr6             C 0 T 196
s macFas5.chr6                321582 17 + 181584905 CCTCGCATCTCTAACAA
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1    16468406 17 +  16742782 CCTCCCATCTCTAACAG
i cerAty1.NW_012009470v1   C 0 C 0
e panTro5.chr5                567593 96 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499788  6 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      552986  1 -    698298 I
e panPan2.chr5                678780 96 + 183735486 T

a score=-1365.000000
s hg38.chr5_KI270793v1_alt     73893 3 +    126136 A-AA
s macFas5.chr6                321599 1 + 181584905 G---
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1    16468423 4 +  16742782 GCAC
i cerAty1.NW_012009470v1   C 0 C 0
e panTro5.chr5                567593 96 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                467041 196 + 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499788 6 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      552986 1 -    698298 I
e panPan2.chr5                678780 96 + 183735486 T

a score=4905.000000
s hg38.chr5_KI270793v1_alt     73896 22 +    126136 ACAAACTCCCATCTCTAACAAA
s nomLeu3.chr6                466845 22 + 121039945 ACAACCTCACATCTCTAACAGG
i nomLeu3.chr6             T 196 C 0
s cerAty1.NW_012009470v1    16468427 22 +  16742782 ACAACCTCCCATCTCTAACAAA
i cerAty1.NW_012009470v1   C 0 T 164
e panTro5.chr5                567593 96 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499788  6 +   1764207 I
e macFas5.chr6                321600  0 + 181584905 C
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      552986  1 -    698298 I
e panPan2.chr5                678780 96 + 183735486 T

a score=653.000000
s hg38.chr5_KI270793v1_alt     73918 8 +    126136 CCTAACAG
s nomLeu3.chr6                466867 7 + 121039945 CCCA-CAA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                321600 7 + 181584905 CCTA-CAG
i macFas5.chr6             C 0 C 0
e panTro5.chr5                567593 96 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468449 164 +  16742782 T
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499788 6 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      552986 1 -    698298 I
e panPan2.chr5                678780 96 + 183735486 T

a score=20036.000000
s hg38.chr5_KI270793v1_alt     73926 47 +    126136 CCTCCCATCTCTAACAAACCTACAGCCTCCCTTCTCTAACAAACCTA
s gorGor5.CYUI01015805v1      552987 47 -    698298 CCTCCCATCTCTAACAAGCCTACAGCCTCCCATCTCTAACAAACCTA
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6                466874 47 + 121039945 CCTCATATCTCTAACAAGCCTACAGCCTCCCTTCTCTAACAAGCCTA
i nomLeu3.chr6             C 0 T 76
s macFas5.chr6                321607 46 + 181584905 CCTCACATCTCTAACAAACATGCAGCCTCACATCTCTAACAAACAT-
i macFas5.chr6             C 0 C 0
e panTro5.chr5                567593 96 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468449 164 +  16742782 T
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499788  6 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 96 + 183735486 T

a score=5095.000000
s hg38.chr5_KI270793v1_alt     73973 52 +    126136 ACAGCCTCCCATCTCTAATAAACCTAACAGCCTCCCATCTCTAACAAACCTA
s gorGor5.CYUI01015805v1      553034 25 -    698298 ---------------------------CAGCCTCCCATCTCTAACAAGCCTA
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6                321653 50 + 181584905 GCAGCCTCACATCTCTAACAAACATG-CAGCCTCACATCTCTAACAAGCCT-
i macFas5.chr6             C 0 C 0
e panTro5.chr5                567593 96 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                466921 76 + 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468449 164 +  16742782 T
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499788  6 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 96 + 183735486 T

a score=910.000000
s hg38.chr5_KI270793v1_alt     74025 1 +    126136 A
s panTro5.chr5                567497 1 + 181907262 A
i panTro5.chr5             T 96 C 0
s panPan2.chr5                678684 1 + 183735486 A
i panPan2.chr5             T 96 C 0
s nomLeu3.chr6                466845 1 + 121039945 A
i nomLeu3.chr6             T 76 C 0
s macFas5.chr6                321703 1 + 181584905 A
i macFas5.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468449 164 +  16742782 T
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499788 6 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      553059 0 -    698298 C

a score=7716.000000
s hg38.chr5_KI270793v1_alt     74026  8 +    126136 CAGCCT---CC
s panTro5.chr5                567498  8 + 181907262 CAACCT---CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5                678685  8 + 183735486 CAACCT---CC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      553059 11 -    698298 CAGCCTCCCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466846  8 + 121039945 CAACCT---CA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                321704  8 + 181584905 CAGCAT---CG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1    16468285  8 +  16742782 CAGCCT---CA
i cerAty1.NW_012009470v1   T 164 C 0
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499788  6 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I

a score=124182.000000
s hg38.chr5_KI270793v1_alt     74034 64 +    126136 CATCTCTAACAAGCCTACAGCCTCCCATCTCTAACAAACCTACAGCCTCCCATCTCTAACAAAC
s panTro5.chr5                567506 64 + 181907262 CATCTCTAACAAGCCTACAGCCTCCCTTCTCTAACAAGCCTACAACCTCACATCTCTAACAAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5                678693 64 + 183735486 CATCTCTAACAAGCCTACAGCCTCCCTTCTCTAACAAGCCTACAACCTCACATCTCTAACAAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      553070 64 -    698298 CATCTCTAACAGGCCTACAGCCTCCCATCTCTAACAGGCCTACAGCCTCCCATCTCTAAGAAAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466854 64 + 121039945 CATCTCTAACAGGCCCACAACCTCATATCTCTAACAAGCCTACAGCCTCCCTTCTCTAACAAGC
i nomLeu3.chr6             C 0 T 75
s macFas5.chr6                321712 57 + 181584905 CATCTCTAACAAGCCTACAGCCTCATATCTCTAACAAGTG-------TCACATCTTTAAGAAGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1499794 64 +   1764207 CATCTTTAAGAAGCCTACAGCCTCCCATCTCCAACAGGCACACAACCTCCCATCTCTAACAGGC
i macNem1.NW_012012389v1   I 6 C 0
s cerAty1.NW_012009470v1    16468293 64 +  16742782 CATCTCTAACAAGTGTACAGCCTCACATCTCTAACAGGCTTACAGCGTCCCATCTCTAACAAGC
i cerAty1.NW_012009470v1   C 0 C 0
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e rheMac8.chr6                521135  0 + 180051392 I

a score=49770.000000
s hg38.chr5_KI270793v1_alt     74098 23 +    126136 CTACAG-CCTCCCATCTCTAACAA
s panTro5.chr5                567570 23 + 181907262 CTACAG-CCTCCCATCTCTAACAA
i panTro5.chr5             C 0 T 5607
s panPan2.chr5                678757 23 + 183735486 CTACAG-CCTCGCATTTCTGACAA
i panPan2.chr5             C 0 T 5527
s gorGor5.CYUI01015805v1      553134 24 -    698298 CTACAGCCCTCCCATCTCTAACAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466843 23 + 121039945 CTACAA-CCTCACATCTCTAACAG
i nomLeu3.chr6             T 75 C 0
s macFas5.chr6                321769 23 + 181584905 CTACAG-CTTCCCATCTCTAACAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1499858 23 +   1764207 CTACAG-CCTCCCATCTCTAACAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1    16468357 23 +  16742782 CTACAG-CCTCACATCTCTAACAA
i cerAty1.NW_012009470v1   C 0 n 0
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e rheMac8.chr6                521135  0 + 180051392 I

a score=1807.000000
s hg38.chr5_KI270793v1_alt     74121 4 +    126136 ACCT
s gorGor5.CYUI01015805v1      553158 4 -    698298 GCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466866 4 + 121039945 GCCC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                321792 4 + 181584905 GCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1499881 4 +   1764207 GCCT
i macNem1.NW_012012389v1   C 0 T 50
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=29391.000000
s hg38.chr5_KI270793v1_alt     74125 104 +    126136 AACAGCCTCCCATCTCTAACAAACCTACAGCCTCCCTTCTCTAACAAACCTAACAGCCTCCCATCTCTAATAAACCTAACAGCCTCCCATCTCTAACAAACCTA
s gorGor5.CYUI01015805v1      553162 101 -    698298 A-CAGCCTCCCATCTCTAAGAAACCTACAGCCTCCCATCTCTAAGAAAGCTA-CAGCCTCCCATCTCTAACAGGCCTA-CAGCCTCCCATCTCTAACAAGCCTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466870  76 + 121039945 A-CAACCTCATATCTCTAACAAGCCTACAGCCTCCCTTCTCTAACAAGCCTA---------------------------CAGCCTCCCATCTCTAACAAGCCTA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                321796  93 + 181584905 -ACAACCTCCCATCTTTAACAAGCCTACAGCCTCCCATCTCTAACAAGCCTA-CAGCCTCACATCTCTAAC--------AAGTGTCACATCTTTAAGAAGCCT-
i macFas5.chr6             C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066  19 -  91010382 I
e cerAty1.NW_012009470v1    16468380   0 +  16742782 I
e colAng1.NW_012118799v1      200948  12 -    514179 I
e macNem1.NW_012012389v1     1499885  50 +   1764207 T
e rheMac8.chr6                521135   0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=40496.000000
s hg38.chr5_KI270793v1_alt     74229 50 +    126136 ACAGCCTCCCATCTCTAACAAGCCTACAGCCTCCCATCTCTAACAAACCT
s gorGor5.CYUI01015805v1      553263 49 -    698298 -CAGCCTCCCATCTCTAACAGGCCTACAGCCTCCCATCTCTAACAAGCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466946 49 + 121039945 -CAGCCTCCCATCTCTAAGAAACCCACAGCCTCCCATCTCTAACAAACCT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                321889 50 + 181584905 ACAGCCTCCCATCTCCAACAGGCACACAACCTCCCATCTCTAACAGGCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1     1499835 50 +   1764207 ACAACCTCCCATCTCTAACAGGCCTACAGCCTCCCATCTCTAACAAGCCT
i macNem1.NW_012012389v1   T 50 n 50
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=17344.000000
s hg38.chr5_KI270793v1_alt     74279 72 +    126136 ACAGCCTCCCATCTCTAACAAACCTAACAGCCTCCCATCTCTAACAAACCTACAGCCTCCCTTCTCTAACAA
s gorGor5.CYUI01015805v1      553312 71 -    698298 ACAGCCTCCCATCTCTAAGAAACCT-ACAGCCTCCCATCTCTAAGAAACCTACAACCTCCCTTCTCTAACAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466995 46 + 121039945 ACAGCCTCACGTGTCTAACAAGCCT-ACAGCCTCGCATTTCTGACAA-------------------------
i nomLeu3.chr6             C 0 T 25
s macFas5.chr6                321939 64 + 181584905 ACAGCCTCCCATCTCTAACAAGCCT--------CACATCTCTAACAAATCCACGGCCTCGCATTTCTGACAA
i macFas5.chr6             C 0 T 136
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=4801.000000
s hg38.chr5_KI270793v1_alt     74351 32 +    126136 ACCTAACAGCCTCCCTTCTCTAACAAACCTCC
s gorGor5.CYUI01015805v1      553383 31 -    698298 GCCT-ACATCCTCCCATCTCTAACAAGCCTAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                467016 31 + 121039945 GCCT-ACAGCCTCGCATTTCTGACAAGTTTCC
i nomLeu3.chr6             T 25 T 102
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6                322003 136 + 181584905 T
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=582.000000
s hg38.chr5_KI270793v1_alt     74383 6 +    126136 AGCCTC
s gorGor5.CYUI01015805v1      553414 6 -    698298 AGCCTC
i gorGor5.CYUI01015805v1   C 0 T 158
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                467047 102 + 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6                322003 136 + 181584905 T
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     74389 18 +    126136 CCTTCTCTAACAAACCTA
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                467047 102 + 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6                322003 136 + 181584905 T
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553420 158 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=1779.000000
s hg38.chr5_KI270793v1_alt     74407 28 +    126136 ACAGCCTCCCTTCTCTAAAAAACCAAAG
s nomLeu3.chr6                466945 28 + 121039945 ACAGCCTCCCATCTCTAAGAAACCCACA
i nomLeu3.chr6             T 102 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6                322003 136 + 181584905 T
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553420 158 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=3659.000000
s hg38.chr5_KI270793v1_alt     74435 22 +    126136 GCCTCCCATCTCTTAAAAACCT
s nomLeu3.chr6                466973 22 + 121039945 GCCTCCCATCTCTAACAAACCT
i nomLeu3.chr6             C 0 T 88
s macFas5.chr6                321867 22 + 181584905 GTGTCACATCTTTAAGAAGCCT
i macFas5.chr6             T 136 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553420 158 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=3552.000000
s hg38.chr5_KI270793v1_alt     74457 75 +    126136 AACAGCCTCCCCATCTCTAACAAACCTACAGCCTCCCCATCTCTAAAAAAGCCTACAGGCCTCCCATCTCTAAAA
s macFas5.chr6                321889 70 + 181584905 -ACAGCCT-CCCATCTCCAACAGGCACACAACCT-CCCATCTCT-AACAGGCCTACA-GCCTCCCATCTCTAACA
i macFas5.chr6             C 0 T 70
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                466995 88 + 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553420 158 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     74532 56 +    126136 ACCTACAGCTTCCCTTCTCTAAAAAACCTACGGGCCTCCCCTTTCTAACAAACCGT
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                466995 88 + 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6                321959 70 + 181584905 T
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      553420 158 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=91.000000
s hg38.chr5_KI270793v1_alt     74588 1 +    126136 T
s gorGor5.CYUI01015805v1      144885 1 +    698298 T
i gorGor5.CYUI01015805v1   T 162 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                466995 88 + 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6                321959 70 + 181584905 T
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=2426.000000
s hg38.chr5_KI270793v1_alt     74589 11 +    126136 AGGTTTGTTAC
s gorGor5.CYUI01015805v1      144886 11 +    698298 AGGCTTGTTAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573000 11 - 121039945 AGGCTTGTTAG
i nomLeu3.chr6             T 77 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6                321959 70 + 181584905 T
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=13637.000000
s hg38.chr5_KI270793v1_alt     74600 29 +    126136 AGATGGGAGGCTGTAGGCTTGTTAGAGAG
s gorGor5.CYUI01015805v1      144897 29 +    698298 AGATGGGAGGATGTAGGCCTGTTAGAGAA
i gorGor5.CYUI01015805v1   C 0 I 121
s nomLeu3.chr6             120573011 29 - 121039945 AGATGGGAGGCTGTAGGCTTGTTAGAGAA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263002 29 - 181584905 AGATGGGAGGCTGTAGGCTTCTTAAAGAT
i macFas5.chr6             C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=1057.000000
s hg38.chr5_KI270793v1_alt     74629 8 +    126136 GAGACACT
s nomLeu3.chr6             120573040 8 - 121039945 GGGAGGCT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263031 8 - 181584905 GTGACACT
i macFas5.chr6             C 0 T 116
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      144926 121 +    698298 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=1885.000000
s hg38.chr5_KI270793v1_alt     74637 26 +    126136 GTAGGTTTGTTAGAGATGGGAGGCTG
s nomLeu3.chr6             120573048 26 - 121039945 GTAGGCTTGTTAGAGATATGAGGTTG
i nomLeu3.chr6             C 0 T 145
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 T
e rheMac8.chr6                521135  0 + 180051392 I
e gorGor5.CYUI01015805v1      144926 121 +    698298 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     74663 4 +    126136 TAGG
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573074 145 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 T
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      144926 121 +    698298 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=-332.000000
s hg38.chr5_KI270793v1_alt     74667 7 +    126136 AAGAAAA
s nomLeu3.chr6             120572929 7 - 121039945 TTGTTAG
i nomLeu3.chr6             T 145 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 T
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      144926 121 +    698298 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=1170.000000
s hg38.chr5_KI270793v1_alt     74674 8 +    126136 AGATGGGA
s gorGor5.CYUI01015805v1      145047 8 +    698298 AGATGGGA
i gorGor5.CYUI01015805v1   I 121 C 0
s nomLeu3.chr6             120572936 8 - 121039945 ACACGTGA
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578066 19 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 T
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=14740.000000
s hg38.chr5_KI270793v1_alt     74682 31 +    126136 GGCTGTAGGTTTGTTAGAGATGGGAGGCTGT
s gorGor5.CYUI01015805v1      145055 31 +    698298 GGCTGTAGGCCTGTTAGAGATGGGAGGCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572944 31 - 121039945 GGCTGTAGGTTTGTTAGAGATGGGAGGCTGT
i nomLeu3.chr6             C 0 I 49
s chlSab2.chr4              90578085 30 -  91010382 GGCTGTAGGCTTGTTAGAGATGTGAGGCTG-
i chlSab2.chr4             I 19 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 T
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=273.000000
s hg38.chr5_KI270793v1_alt     74713 1 +    126136 T
s nomLeu3.chr6             120573024 1 - 121039945 T
i nomLeu3.chr6             I 49 C 0
s chlSab2.chr4              90578115 1 -  91010382 T
i chlSab2.chr4             C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 T
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      145086 0 +    698298 C
e panPan2.chr5                678780 5527 + 183735486 T

a score=33990.000000
s hg38.chr5_KI270793v1_alt     74714 67 +    126136 AGGTTTGTTAGAGATGGGAGGCTGTTAGGTTTGTTAGAGAAGGGAGGCTGTAGGTTTGTTAGAGATG
s gorGor5.CYUI01015805v1      145086 66 +    698298 AGCTTTCTTAGAGATGGGAGGCTGT-AGGTTTCTTAGAGATGGGAGGCTGTAGGCTTGTTAGAGATG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573025 66 - 121039945 AGGCTTGTTAGAGAAGGGAGGCTGT-AGGCTTGTTAGAGATATGAGGTTGTGGGCCTGTTAGAGATG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181262923 59 - 181584905 GGATTTGTTAGAGATGTG--------AGGCTTGTTAGAGATGGGAGGCTGTAGGCCTGTTAGAGATG
i macFas5.chr6             T 116 C 0
s chlSab2.chr4              90578116 41 -  91010382 --------------------------AGGCTTGTTAGAGATGTGAGGCTGCATGTTTGTTAGAGATG
i chlSab2.chr4             C 0 I 2
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=2773.000000
s hg38.chr5_KI270793v1_alt     74781  9 +    126136 GGAGG-CTGT
s gorGor5.CYUI01015805v1      145152 10 +    698298 GGAGGGCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573091  9 - 121039945 TGAGG-TTGT
i nomLeu3.chr6             C 0 T 114
s macFas5.chr6             181262982  9 - 181584905 GGAGG-TTGT
i macFas5.chr6             C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157  2 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=525.000000
s hg38.chr5_KI270793v1_alt     74790 10 +    126136 CCGCTTGTTA
s gorGor5.CYUI01015805v1      145162 10 +    698298 AGGTTTCTTA
i gorGor5.CYUI01015805v1   C 0 I 1
s macFas5.chr6             181262991 10 - 181584905 GTGCCTGTTG
i macFas5.chr6             C 0 I 1
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573100 114 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157  2 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e colAng1.NW_012118799v1      200948 12 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=26017.000000
s hg38.chr5_KI270793v1_alt     74800 30 +    126136 AGATGGGAGGCTGTAGGCTTGTTAGAGATG
s gorGor5.CYUI01015805v1      145173 30 +    698298 AGATGGGAGGCTGTAGGCCTGTTAGAGATG
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6             120572986 30 - 121039945 AGATGGGAGGCTGTAGGCTTGTTAGAGATG
i nomLeu3.chr6             T 114 C 0
s macFas5.chr6             181263002 30 - 181584905 AGATGGGAGGCTGTAGGCTTCTTAAAGATG
i macFas5.chr6             I 1 C 0
s colAng1.NW_012118799v1      200960 30 -    514179 AGATGGGAGGCTGTAGGCTTCTTAAAGATG
i colAng1.NW_012118799v1   I 12 I 80
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157  2 -  91010382 I
e cerAty1.NW_012009470v1    16468380  0 +  16742782 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e rheMac8.chr6                521135  0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=2382.000000
s hg38.chr5_KI270793v1_alt     74830 7 +    126136 GGAGGCT
s gorGor5.CYUI01015805v1      145203 7 +    698298 GGAGGCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573016 7 - 121039945 GGAGGCT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263032 7 - 181584905 TGACACT
i macFas5.chr6             C 0 I 116
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157 2 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=300.000000
s hg38.chr5_KI270793v1_alt     74837 1 +    126136 G
s gorGor5.CYUI01015805v1      145210 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 I 10
s nomLeu3.chr6             120573023 1 - 121039945 G
i nomLeu3.chr6             C 0 T 113
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157 2 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 I
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     74838 5 +    126136 AGGAA
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573024 113 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157 2 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 I
e rheMac8.chr6                521135 0 + 180051392 I
e gorGor5.CYUI01015805v1      145211 10 +    698298 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=473.000000
s hg38.chr5_KI270793v1_alt     74843 5 +    126136 AGAGA
s gorGor5.CYUI01015805v1      145221 5 +    698298 AGAGA
i gorGor5.CYUI01015805v1   I 10 T 254
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573024 113 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157 2 -  91010382 I
e cerAty1.NW_012009470v1    16468380 0 +  16742782 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 I
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=2370.000000
s hg38.chr5_KI270793v1_alt     74848 6 +    126136 AGATGG
s gorGor5.CYUI01015805v1      144972 6 +    698298 AGATGG
i gorGor5.CYUI01015805v1   T 254 C 0
s nomLeu3.chr6             120572911 6 - 121039945 AAATGC
i nomLeu3.chr6             T 113 C 0
s cerAty1.NW_012009470v1      274341 6 -  16742782 AGATGG
i cerAty1.NW_012009470v1   C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429295 157 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157 2 -  91010382 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 I
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=7206.000000
s hg38.chr5_KI270793v1_alt     74854 8 +    126136 GAGGCTGT
s gorGor5.CYUI01015805v1      144978 8 +    698298 GAGGCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572917 8 - 121039945 GAGGCTGT
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      274347 8 -  16742782 GAGGTTGT
i cerAty1.NW_012009470v1   C 0 C 0
s aotNan1.NW_018503740v1    25429452 8 -  25620257 GAGGCTGT
i aotNan1.NW_018503740v1   I 157 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157 2 -  91010382 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1     1499885 50 +   1764207 I
e macFas5.chr6             181263039 116 - 181584905 I
e rheMac8.chr6                521135 0 + 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=3630.000000
s hg38.chr5_KI270793v1_alt     74862 3 +    126136 AGG
s gorGor5.CYUI01015805v1      144986 3 +    698298 AGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572925 3 - 121039945 AGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529789 3 - 180051392 AGG
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      264322 3 -   1764207 AGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274355 1 -  16742782 --G
i cerAty1.NW_012009470v1   C 0 I 2
s aotNan1.NW_018503740v1    25429460 2 -  25620257 -GG
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157 2 -  91010382 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macFas5.chr6             181263039 116 - 181584905 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=50616.000000
s hg38.chr5_KI270793v1_alt     74865 22 +    126136 CTTGTTAGAGATGGGAGGCTGT
s gorGor5.CYUI01015805v1      144989 22 +    698298 CTTGTTAGAGATGGGAGGCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572928 22 - 121039945 CTTGTTAGACACGTGAGGCTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529792 22 - 180051392 CTTGTTAGAGATGGGAGGCTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263155 22 - 181584905 CTTGTTAGAGATATGAGGCTGT
i macFas5.chr6             I 116 C 0
s macNem1.NW_012012389v1      264325 22 -   1764207 CTTGTTAGAGATGGGAGGCTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274358 22 -  16742782 CCTGTTAGAGATGGGAGGCTGT
i cerAty1.NW_012009470v1   I 2 C 0
s aotNan1.NW_018503740v1    25429462 22 -  25620257 CTGGTTAGAGATGGGAGGCTGT
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578157  2 -  91010382 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=43343.000000
s hg38.chr5_KI270793v1_alt     74887 18 +    126136 AGGTTTGTTAGAGATGGG
s gorGor5.CYUI01015805v1      145011 18 +    698298 AGGCCTGTTAGAGATGGG
i gorGor5.CYUI01015805v1   C 0 I 254
s nomLeu3.chr6             120572950 18 - 121039945 AGGTTTGTTAGAGATGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529814 18 - 180051392 AGGCCTGTTAGAGATGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263177 18 - 181584905 AGGCTTGTTAGAGATGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264347 18 -   1764207 AGGCCTGTTAGAGATGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274380 18 -  16742782 AGGCTTCTTAAAGATGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578159 18 -  91010382 AGGCTTGTTAGAGATGTG
i chlSab2.chr4             I 2 C 0
s aotNan1.NW_018503740v1    25429484 14 -  25620257 -GG---GTTAGAGACGGG
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=7981.000000
s hg38.chr5_KI270793v1_alt     74905 4 +    126136 AGGC
s gorGor5.CYUI01015805v1      145283 4 +    698298 AGGC
i gorGor5.CYUI01015805v1   I 254 C 0
s nomLeu3.chr6             120572968 4 - 121039945 AGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529832 4 - 180051392 AGGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263195 4 - 181584905 ATGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264365 4 -   1764207 AGGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274398 4 -  16742782 ACAC
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90578177 4 -  91010382 AGGC
i chlSab2.chr4             C 0 C 0
s aotNan1.NW_018503740v1    25429498 4 -  25620257 AGGC
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=-672.000000
s hg38.chr5_KI270793v1_alt     74909 3 +    126136 TGT-
s gorGor5.CYUI01015805v1      145287 2 +    698298 TG--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572972 2 - 121039945 TG--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529836 2 - 180051392 TG--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263199 2 - 181584905 TG--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264369 2 -   1764207 TG--
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90578181 2 -  91010382 TG--
i chlSab2.chr4             C 0 C 0
s aotNan1.NW_018503740v1    25429502 3 -  25620257 TG-T
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274402 1 -  16742782 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=2385.000000
s hg38.chr5_KI270793v1_alt     74912 2 +    126136 TA
s gorGor5.CYUI01015805v1      145289 2 +    698298 TA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572974 2 - 121039945 TG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529838 2 - 180051392 TG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263201 2 - 181584905 TA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264371 2 -   1764207 TG
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90578183 2 -  91010382 TA
i chlSab2.chr4             C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e aotNan1.NW_018503740v1    25429505 0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274402 1 -  16742782 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=5335.000000
s hg38.chr5_KI270793v1_alt     74914 4 +    126136 GGTT
s gorGor5.CYUI01015805v1      145291 4 +    698298 GGCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572976 4 - 121039945 GGTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529840 4 - 180051392 TGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263203 4 - 181584905 GGCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264373 4 -   1764207 TGCC
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90578185 4 -  91010382 GGCT
i chlSab2.chr4             C 0 C 0
s aotNan1.NW_018503740v1    25429505 4 -  25620257 GGCT
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274402 1 -  16742782 I
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=50397.000000
s hg38.chr5_KI270793v1_alt     74918 20 +    126136 TGTTAGAGATGGGAGG-CTGT
s gorGor5.CYUI01015805v1      145295 21 +    698298 TGTTAGAGATGGGAGGTCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572980 20 - 121039945 TCTTAGAGATGGGAGG-CTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529844 20 - 180051392 TGTTGGAGATGGGAGG-CTGT
i rheMac8.chr6             C 0 I 23
s macFas5.chr6             181263207 20 - 181584905 TGTTAGAGATGTGAGG-CTGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264377 20 -   1764207 TGTTGGAGATGGGAGG-CTGT
i macNem1.NW_012012389v1   C 0 I 23
s cerAty1.NW_012009470v1      274403 20 -  16742782 TGTTAGAGATGTGAGG-CTGT
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90578189 20 -  91010382 TGTTAGACATGCAAGG-TTGC
i chlSab2.chr4             C 0 C 0
s aotNan1.NW_018503740v1    25429509 20 -  25620257 GGTTAGAGATGGGAGG-CTGT
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=-3760.000000
s hg38.chr5_KI270793v1_alt     74938 5 +    126136 TAGGT
s gorGor5.CYUI01015805v1      145316 5 +    698298 AGGCT
i gorGor5.CYUI01015805v1   C 0 I 1
s nomLeu3.chr6             120573000 4 - 121039945 AGGC-
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263227 4 - 181584905 ATGT-
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      274423 4 -  16742782 AGGC-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578209 4 -  91010382 AGGC-
i chlSab2.chr4             C 0 C 0
s aotNan1.NW_018503740v1    25429529 2 -  25620257 -GG--
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5                567593 5607 + 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264397 23 -   1764207 I
e rheMac8.chr6             179529864 23 - 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=23639.000000
s hg38.chr5_KI270793v1_alt     74943 11 +    126136 TTGTTAGAGAA
s panTro5.chr5             181339669 11 - 181907262 TTGTTAGAGAT
i panTro5.chr5             M 5343 C 0
s gorGor5.CYUI01015805v1      145322 11 +    698298 GTGTTAGAGAT
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6             120573004 11 - 121039945 TTGTTAGAGAT
i nomLeu3.chr6             C 0 T 75
s macFas5.chr6             181263231 11 - 181584905 TTGTTAGAGAT
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      274427 11 -  16742782 TTGTTAGAGAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578213 11 -  91010382 TTGTTAGAGAC
i chlSab2.chr4             C 0 C 0
s aotNan1.NW_018503740v1    25429531  9 -  25620257 --GTTAGAGAT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264397 23 -   1764207 I
e rheMac8.chr6             179529864 23 - 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=14987.000000
s hg38.chr5_KI270793v1_alt     74954 15 +    126136 GGGAG---GCTGTAGG--TT
s panTro5.chr5             181339680 15 - 181907262 GGGAG---GCTGTAGG--CT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145333 20 +    698298 GGGAGGGAGCTGTAGGGCTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572940 15 - 121039945 GTGAG---GCTGTAGG--TT
i nomLeu3.chr6             T 75 C 0
s macFas5.chr6             181263242 15 - 181584905 GTGAG---GCTGCATG--TT
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      274438 15 -  16742782 GGGAC---GCTGTAAG--CC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578224 15 -  91010382 GGGAC---GCTGTAGG--CT
i chlSab2.chr4             C 0 C 0
s aotNan1.NW_018503740v1    25429540 12 -  25620257 GGGAG---GCTGTGG-----
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264397 23 -   1764207 I
e rheMac8.chr6             179529864 23 - 180051392 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=39436.000000
s hg38.chr5_KI270793v1_alt     74969 10 +    126136 TGTTAGAGAT
s panTro5.chr5             181339695 10 - 181907262 TGTTAGAGAT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145353 10 +    698298 GGTTAGAGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572955 10 - 121039945 TGTTAGAGAT
i nomLeu3.chr6             C 0 I 75
s rheMac8.chr6             179529887 10 - 180051392 TGTTAGAGAT
i rheMac8.chr6             I 23 C 0
s macFas5.chr6             181263257 10 - 181584905 TGTTAGAGAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264420 10 -   1764207 TGTTAGAGAT
i macNem1.NW_012012389v1   I 23 C 0
s cerAty1.NW_012009470v1      274453 10 -  16742782 TGTTAGAGAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578239 10 -  91010382 TGTTAGAGAT
i chlSab2.chr4             C 0 C 0
s aotNan1.NW_018503740v1    25429552  9 -  25620257 -GTTAGAGAT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=155918.000000
s hg38.chr5_KI270793v1_alt     74979 50 +    126136 GGGAGGCTGTACGCTTGTTAGAGATGGCA-GGCTGTAGGCTTGTTAGAGA-T
s panTro5.chr5             181339705 50 - 181907262 GTGAGGTTGTAGGCTTGTTAGAGAAGGGA-GGCTGTAGGCTTGTTAGAGA-T
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145363 52 +    698298 GGGAGGCTGTAGGCTTGTTAGAGATGGGAGGGCTGTAGGCCTGTTAGAGATT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573040 50 - 121039945 GGGAGGCTGTAGGCTTGTTAGAGATATGA-GGTTGTGGGCCTGTTAGAGA-T
i nomLeu3.chr6             I 75 C 0
s rheMac8.chr6             179529897 50 - 180051392 GTGAGGCTGTAGGCTTGTTAGAGATGGGA-GGCTGTAGGCTTGTTAAAGA-T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263267 50 - 181584905 GTGAGGCTGCATGTTTGTTAGAGATGTGA-GGCTGTAGGCTTGTTAGAGA-T
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264430 50 -   1764207 GTGAGGCTGTAGGCTTGTTAGAGATGGGA-GGCTGTAGGCTTGTTAAAGA-T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274463 50 -  16742782 GTGAGGCTGTACACTTGTTAGAGATGTGA-GGCTGTAGGCTTGTTAGAGA-T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578249 50 -  91010382 GTGAGACTGTACACTTGTTAGAGATGTAA-GGCTGTAGGCTTGTTAGAGA-T
i chlSab2.chr4             C 0 T 320
s aotNan1.NW_018503740v1    25429561 45 -  25620257 GGGAGGCTGTGG----GTTAGAGACGGGA-GGCTGT-GGCTGGTTAGAGA-T
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=27024.000000
s hg38.chr5_KI270793v1_alt     75029 10 +    126136 GGGAGGCTGT
s panTro5.chr5             181339755 10 - 181907262 GGGAGGTTGT
i panTro5.chr5             C 0 T 96
s gorGor5.CYUI01015805v1      145415 10 +    698298 GGGAGGCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573090 10 - 121039945 GTGAGGTTGT
i nomLeu3.chr6             C 0 T 151
s rheMac8.chr6             179529947 10 - 180051392 GGGAGGTTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263317 10 - 181584905 GCGAGGCTGT
i macFas5.chr6             C 0 T 170
s macNem1.NW_012012389v1      264480 10 -   1764207 GGGAGGTTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274513 10 -  16742782 ACGAGGTTGT
i cerAty1.NW_012009470v1   C 0 C 0
s aotNan1.NW_018503740v1    25429606 10 -  25620257 GGGAGGCTGT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=8966.000000
s hg38.chr5_KI270793v1_alt     75039 10 +    126136 CGGCTTGTTA
s gorGor5.CYUI01015805v1      145425 10 +    698298 AGGCTTGTTA
i gorGor5.CYUI01015805v1   C 0 T 406
s rheMac8.chr6             179529957 10 - 180051392 GTGCCTGTTA
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      264490 10 -   1764207 GTGCCTGTTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274523 10 -  16742782 AGGCTTGTTA
i cerAty1.NW_012009470v1   C 0 T 132
s aotNan1.NW_018503740v1    25429616  9 -  25620257 -GGCTCGTTA
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573100 151 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macFas5.chr6             181263327 170 - 181584905 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=6642.000000
s hg38.chr5_KI270793v1_alt     75049 14 +    126136 CAAATGGGAAGCTG
s rheMac8.chr6             179529967 14 - 180051392 GAGATGGGAAGCTG
i rheMac8.chr6             C 0 T 95
s macNem1.NW_012012389v1      264500 14 -   1764207 GAGATGGGAAGCTG
i macNem1.NW_012012389v1   C 0 I 41
s aotNan1.NW_018503740v1    25429625 14 -  25620257 GAGATGGGAGGCTG
i aotNan1.NW_018503740v1   C 0 T 134
e panTro5.chr5             181339765 96 - 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573100 151 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macFas5.chr6             181263327 170 - 181584905 T
e gorGor5.CYUI01015805v1      145435 406 +    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     75063 5 +    126136 AAGCT
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573100 151 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e macFas5.chr6             181263327 170 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      145435 406 +    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=937.000000
s hg38.chr5_KI270793v1_alt     75068 10 +    126136 TGTTAGAGAT
s macFas5.chr6             181263157 10 - 181584905 TGTTAGAGAT
i macFas5.chr6             T 170 T 109
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573100 151 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      145435 406 +    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     75078 1 +    126136 A
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573100 151 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e macFas5.chr6             181263167 109 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      145435 406 +    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=3037.000000
s hg38.chr5_KI270793v1_alt     75079 12 +    126136 ACAGCCTCCCAA
s gorGor5.CYUI01015805v1      553262 12 -    698298 ACAGCCTCCCAT
i gorGor5.CYUI01015805v1   T 158 C 0
s macFas5.chr6                321889 12 + 181584905 ACAGCCTCCCAT
i macFas5.chr6             T 70 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573100 151 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=42797.000000
s hg38.chr5_KI270793v1_alt     75091 97 +    126136 CTCTAACAAGCCTACAGCCTCCCATCTCTAACAAACCTACAGCCTCCCATCTCTAACAAACCTAACAGCCTCCCATCTCTAACAAACCTACAGCCTC
s gorGor5.CYUI01015805v1      553274 96 -    698298 CTCTAACAGGCCTACAGCCTCCCATCTCTAACAAGCCTACAGCCTCCCATCTCTAAGAAACCT-ACAGCCTCCCATCTCTAAGAAACCTACAACCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6                466907 96 + 121039945 CTCTAACAAGCCTACAGCCTCCCATCTCTAACAAGCCTACAGCCTCCCATCTCTAAGAAACCC-ACAGCCTCCCATCTCTAACAAACCTACAGCCTC
i nomLeu3.chr6             T 88 C 0
s macFas5.chr6                321901 89 + 181584905 CTCCAACAGGCACACAACCTCCCATCTCTAACAGGCCTACAGCCTCCCATCTCTAACAAGCCT--------CACATCTCTAACAAATCCACGGCCTC
i macFas5.chr6             C 0 T 9991
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=-128.000000
s hg38.chr5_KI270793v1_alt     75188 1 +    126136 C
s gorGor5.CYUI01015805v1      553370 1 -    698298 C
i gorGor5.CYUI01015805v1   C 0 T 6739
s nomLeu3.chr6                467003 1 + 121039945 A
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e macFas5.chr6                321990 9991 + 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=-119.000000
s hg38.chr5_KI270793v1_alt     75189 10 +    126136 GTTGTGGACC
s nomLeu3.chr6                467004 10 + 121039945 CGTGTCTAAC
i nomLeu3.chr6             C 0 T 69
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e macFas5.chr6                321990 9991 + 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     75199 4 +    126136 GCTA
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                467014 69 + 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e macFas5.chr6                321990 9991 + 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=2590.000000
s hg38.chr5_KI270793v1_alt     75203 36 +    126136 ACAGCCTCCCATCTCTAATAAACCTAACAGCCTCCC
s nomLeu3.chr6                466945 35 + 121039945 ACAGCCTCCCATCTCTAAGAAACCC-ACAGCCTCCC
i nomLeu3.chr6             T 69 n 69
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e macFas5.chr6                321990 9991 + 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     75239 1 +    126136 T
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6                466980 69 + 121039945 n
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e macFas5.chr6                321990 9991 + 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=11553.000000
s hg38.chr5_KI270793v1_alt     75240 47 +    126136 TAGGTTTGTTAGAGAAGGGAGGCTGTAGGTTTGTTAGAGATGGGAGG
s nomLeu3.chr6             120572949 47 - 121039945 TAGGTTTGTTAGAGATGGGAGGCTGTGGGTTTCTTAGAGATGGGAGG
i nomLeu3.chr6             T 151 T 46
s macFas5.chr6             181263058 47 - 181584905 TAGGCTTGTTAGAGATGGGAGGCTGTAGGCTTGTTAAAGATGGGAGG
i macFas5.chr6             T 109 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=-62.000000
s hg38.chr5_KI270793v1_alt     75287 2 +    126136 CC
s macFas5.chr6             181263105 2 - 181584905 TT
i macFas5.chr6             C 0 I 242
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120572996 46 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=3664.000000
s hg38.chr5_KI270793v1_alt     75289 102 +    126136 CTTAGGTTTTTTAGAGATGGGAGGCTGTAGGTTTTTTA-AGAAGGGAGGCCGTAGGCTTTTTACAAAAGGGGGGCCTTTAGGTTTTTTAGAGAAGGGAGGCCG
s macFas5.chr6             181263349 102 - 181584905 TGCATGTTTGTTAGAGATGTGAGGCTGTACACTTGTTAGAGATGTGAGGCTGTACACTTCTTAGAGATGTGAGG-CTGTAGGCTTGTTAGAGATACGAGGTTG
i macFas5.chr6             I 242 T 172
e panTro5.chr5             181339765  96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120572996  46 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990  80 -    514179 I
e macNem1.NW_012012389v1      264514  41 -   1764207 I
e rheMac8.chr6             179529981  95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     75391 28 +    126136 TTAGGTTTATTAGAGATGGGAGGCTGTT
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120572996 46 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e macFas5.chr6             181263451 172 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=191.000000
s hg38.chr5_KI270793v1_alt     75419 2 +    126136 AG
s nomLeu3.chr6             120572950 2 - 121039945 AG
i nomLeu3.chr6             T 46 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e macFas5.chr6             181263451 172 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=10756.000000
s hg38.chr5_KI270793v1_alt     75421 48 +    126136 GTTTGTTAGAGAAGGGAGGCTGTTGTTTTGTTAGAGATGGGAGGCTGT
s nomLeu3.chr6             120572952 48 - 121039945 GTTTGTTAGAGATGGGAGGCTGTGGGTTTCTTAGAGATGGGAGGCTGT
i nomLeu3.chr6             C 0 T 59
s macFas5.chr6             181263279 48 - 181584905 GTTTGTTAGAGATGTGAGGCTGTAGGCTTGTTAGAGATGCGAGGCTGT
i macFas5.chr6             T 172 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=1258.000000
s hg38.chr5_KI270793v1_alt     75469 16 +    126136 TAGGTTTGTTAGAGAT
s macFas5.chr6             181263327 15 - 181584905 -AGGCTTGTTAGAGAT
i macFas5.chr6             C 0 T 175
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573000 59 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=0.000000
s hg38.chr5_KI270793v1_alt     75485 45 +    126136 AGGCTGTAGGTTTGTTAGAGATGGGAGGTTGTTAGGTTGCAGGAG
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573000 59 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e macFas5.chr6             181263342 175 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=91.000000
s hg38.chr5_KI270793v1_alt     75530 1 +    126136 A
s macFas5.chr6             181263167 1 - 181584905 A
i macFas5.chr6             T 175 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573000 59 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=573.000000
s hg38.chr5_KI270793v1_alt     75531 2 +    126136 TG
s nomLeu3.chr6             120572941 2 - 121039945 TG
i nomLeu3.chr6             T 59 C 0
s macFas5.chr6             181263168 2 - 181584905 TG
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e gorGor5.CYUI01015805v1      553371 6739 -    698298 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=4584.000000
s hg38.chr5_KI270793v1_alt     75533 8 +    126136 AGGCTGTA
s gorGor5.CYUI01015805v1      145029 8 +    698298 AGGCTGTA
i gorGor5.CYUI01015805v1   T 406 C 0
s nomLeu3.chr6             120572943 8 - 121039945 AGGCTGTA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263170 8 - 181584905 AGGCTGTA
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203856959 115 + 204313951 T
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=11653.000000
s hg38.chr5_KI270793v1_alt     75541 15 +    126136 GGTTTGTTAGAGATG
s gorGor5.CYUI01015805v1      145037 15 +    698298 GGCTTGTTAGAGATG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572951 15 - 121039945 GGTTTGTTAGAGATG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263178 15 - 181584905 GGCTTGTTAGAGATG
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203856844 15 + 204313951 GGCTGGTTAGAGACA
i calJac3.chr2             T 115 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264514 41 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=22614.000000
s hg38.chr5_KI270793v1_alt     75556 23 +    126136 GGAGGCTGTAGGCTTGTTAGAGA
s gorGor5.CYUI01015805v1      145052 23 +    698298 GGAGGCTGTAGGCCTGTTAGAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572966 23 - 121039945 GGAGGCTGTGGGTTTCTTAGAGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263193 23 - 181584905 CGATGCTGTAGGCTTGTTAGAGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264555 23 -   1764207 GGAGGCTGTAGGCTTGTTAGAGA
i macNem1.NW_012012389v1   I 41 I 664
s calJac3.chr2             203856859 19 + 204313951 GGACGCTGTGGG----TTAGAGA
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=910.000000
s hg38.chr5_KI270793v1_alt     75579 1 +    126136 T
s gorGor5.CYUI01015805v1      145075 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572989 1 - 121039945 T
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263216 1 - 181584905 T
i macFas5.chr6             C 0 T 93
s calJac3.chr2             203856878 1 + 204313951 T
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=20243.000000
s hg38.chr5_KI270793v1_alt     75580 34 +    126136 GGGAGGCTGTTAGGTTTGTTAGAGATGGGAGGCT
s gorGor5.CYUI01015805v1      145076 33 +    698298 GGGAGGCTGT-AGCTTTCTTAGAGATGGGAGGCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572990 33 - 121039945 GGGAGGCTGT-AGGCTTGTTAGAGATGGGAGGCT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263124 33 - 181584905 GGGAAGCTGT-AGGCTTCTTAAAGATGTGACACT
i macFas5.chr6             T 93 T 33
s calJac3.chr2             203856879 32 + 204313951 GGGAGGCTGT--GGCTGGTTAGAGATGGCAGGCT
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=8097.000000
s hg38.chr5_KI270793v1_alt     75614 27 +    126136 GTTAGGTTTATTAGAGATGGGAGGCTG
s gorGor5.CYUI01015805v1      145109 26 +    698298 GT-AGGTTTCTTAGAGATGGGAGGCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573023 26 - 121039945 GT-AGGCTTGTTAGAGAAGGGAGGCTG
i nomLeu3.chr6             C 0 T 25
s calJac3.chr2             203856911 25 + 204313951 --GTGGCTGGTTAGAGACGGGACGCTG
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e macFas5.chr6             181263157 33 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=273.000000
s hg38.chr5_KI270793v1_alt     75641 1 +    126136 T
s gorGor5.CYUI01015805v1      145135 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203856936 1 + 204313951 T
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573049 25 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e macFas5.chr6             181263157 33 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=5754.000000
s hg38.chr5_KI270793v1_alt     75642 16 +    126136 TAGGTTTGTTAGAGAA
s gorGor5.CYUI01015805v1      145136 15 +    698298 -AGGCTTGTTAGAGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573024 16 - 121039945 TAGGCTTGTTAGAGAA
i nomLeu3.chr6             T 25 C 0
s calJac3.chr2             203856937 14 + 204313951 --GGCTGGTTAGAGAC
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e macFas5.chr6             181263157 33 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=16048.000000
s hg38.chr5_KI270793v1_alt     75658 28 +    126136 GGGAGG-CTGTAGGTTTGTTAGAGATGGG
s gorGor5.CYUI01015805v1      145151 29 +    698298 GGGAGGGCTGTAGGTTTCTTAGAGATGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573040 28 - 121039945 GGGAGG-CTGTAGGCTTGTTAGAGATATG
i nomLeu3.chr6             C 0 T 68
s macFas5.chr6             181263124 28 - 181584905 GGGAAG-CTGTAGGCTTCTTAAAGATGTG
i macFas5.chr6             T 33 C 0
s calJac3.chr2             203856951 24 + 204313951 GGGACG-CTGTGGG----TTAGAGATGGG
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=910.000000
s hg38.chr5_KI270793v1_alt     75686 1 +    126136 A
s gorGor5.CYUI01015805v1      145180 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573000 1 - 121039945 A
i nomLeu3.chr6             T 68 C 0
s macFas5.chr6             181263152 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203856975 1 + 204313951 A
i calJac3.chr2             C 0 I 6
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429639 134 -  25620257 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=25342.000000
s hg38.chr5_KI270793v1_alt     75687 27 +    126136 GGCT-------TGTTAGAGATGGGAGGCTGTAGG
s gorGor5.CYUI01015805v1      145181 34 +    698298 GGCTGTAGGCCTGTTAGAGATGGGAGGCTGTAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573001 27 - 121039945 GGCT-------TGTTAGAGATGGGAGGCTGTAGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263153 27 - 181584905 CACT-------TGTTAGAGATATGAGGCTGTAGG
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203856982 26 + 204313951 GGCT-------GGTTAGAGACGGGACGCTGTGG-
i calJac3.chr2             I 6 C 0
s aotNan1.NW_018503740v1    25429505 27 -  25620257 GGCT-------GGTTAGAGATGGGAGGCTGTGGG
i aotNan1.NW_018503740v1   T 134 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=5367.000000
s hg38.chr5_KI270793v1_alt     75714 12 +    126136 TTTGTTAGAGAT
s gorGor5.CYUI01015805v1      145215 12 +    698298 CCTGTTAGAGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573028 12 - 121039945 CTTGTTAGAGAA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263180 12 - 181584905 CTTGTTAGAGAT
i macFas5.chr6             C 0 T 17
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532  0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203857008  0 + 204313951 C
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=1529.000000
s hg38.chr5_KI270793v1_alt     75726 6 +    126136 GGGAGG
s gorGor5.CYUI01015805v1      145227 6 +    698298 GGGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573040 6 - 121039945 GGGAGG
i nomLeu3.chr6             C 0 T 96
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532 0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203857008 0 + 204313951 C
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e macFas5.chr6             181263192 17 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=22878.000000
s hg38.chr5_KI270793v1_alt     75732 79 +    126136 AG-----AAACTTGTTAGAGATGGGAGGCTGTTAGGTTTGTTAGAGATGGGAGGCTGTTAGGTTTATTAGAGATGGGAGG-CTGT
s gorGor5.CYUI01015805v1      145233 83 +    698298 AGGCTGTAGGCTTGTTAGAGATGGGAGGCTGT-AGGTTTGTTAGAGATGGGAGGCTGT-AGGCTTGTTAGAGATGGGAGGTCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181263175 77 - 181584905 -----GTAGGCTTGTTAGAGATGCGATGCTGT-AGGCTTGTTAGAGATGTGAGGCTGC-ATGTTTGTTAGAGATGTGAGG-CTGC
i macFas5.chr6             T 17 T 35
s calJac3.chr2             203857008 67 + 204313951 ----------CTGGTTAGAGACGGGACGCTGT--GGCTGGTTAGAGACGGGAGGCTGT-GGG----TTAGAGATGGGACA-CTGT
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532  0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573046 96 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=-123.000000
s hg38.chr5_KI270793v1_alt     75811 1 +    126136 T
s gorGor5.CYUI01015805v1      145316 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532 0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203857075 0 + 204313951 C
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573046 96 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e macFas5.chr6             181263252 35 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=4030.000000
s hg38.chr5_KI270793v1_alt     75812 15 +    126136 AGGTT-TGTTAGAGAA
s gorGor5.CYUI01015805v1      145317 16 +    698298 GGCTTGTGTTAGAGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572950 15 - 121039945 AGGTT-TGTTAGAGAT
i nomLeu3.chr6             T 96 C 0
s calJac3.chr2             203857075 14 + 204313951 -GGCT-GGTTAGAGAC
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532  0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e macFas5.chr6             181263252 35 - 181584905 T
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=18227.000000
s hg38.chr5_KI270793v1_alt     75827 35 +    126136 GGGAGG---CTGTAGG--TTTGTTAGAGATGGGAGGCTGT
s gorGor5.CYUI01015805v1      145333 40 +    698298 GGGAGGGAGCTGTAGGGCTTGGTTAGAGATGGGAGGCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572965 35 - 121039945 GGGAGG---CTGTGGG--TTTCTTAGAGATGGGAGGCTGT
i nomLeu3.chr6             C 0 T 25
s macFas5.chr6             181263217 35 - 181584905 GTGAGG---CTGCATG--TTTGTTAGAGATGTGAGGCTGC
i macFas5.chr6             T 35 I 75
s calJac3.chr2             203857089 31 + 204313951 AGGATG---CTGTGGG------TTAGAGATGGGACACTGT
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532  0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=1775.000000
s hg38.chr5_KI270793v1_alt     75862 29 +    126136 TAGGTTTGTTAGACAAGGGGGAGGCTGTT
s gorGor5.CYUI01015805v1      145373 26 +    698298 -AGGCTTGTTAGAGATGGGAG-GGCTGT-
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203857120 24 + 204313951 --GGCTGGTTAGAGACAGGA--CGCTGT-
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532  0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573000 25 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e macFas5.chr6             181263252 75 - 181584905 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=1060.000000
s hg38.chr5_KI270793v1_alt     75891 2 +    126136 AG
s gorGor5.CYUI01015805v1      145399 2 +    698298 AG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572975 2 - 121039945 GG
i nomLeu3.chr6             T 25 C 0
s macFas5.chr6             181263327 2 - 181584905 AG
i macFas5.chr6             I 75 C 0
s calJac3.chr2             203857144 1 + 204313951 -G
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532 0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      264578 664 -   1764207 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=-463.000000
s hg38.chr5_KI270793v1_alt     75893 2 +    126136 GT
s gorGor5.CYUI01015805v1      145401 2 +    698298 GC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572977 2 - 121039945 GT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263329 2 - 181584905 GC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      265242 2 -   1764207 GT
i macNem1.NW_012012389v1   I 664 C 0
s calJac3.chr2             203857145 1 + 204313951 G-
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532 0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578299 320 -  91010382 T
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e rheMac8.chr6             179529981 95 - 180051392 T
e panPan2.chr5                678780 5527 + 183735486 T

a score=1179.000000
s hg38.chr5_KI270793v1_alt     75895 1 +    126136 T
s gorGor5.CYUI01015805v1      145403 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572979 1 - 121039945 T
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529886 1 - 180051392 T
i rheMac8.chr6             T 95 C 0
s macFas5.chr6             181263331 1 - 181584905 T
i macFas5.chr6             C 0 T 293
s macNem1.NW_012012389v1      265244 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90577979 1 -  91010382 T
i chlSab2.chr4             T 320 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532 0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e calJac3.chr2             203857146 0 + 204313951 C
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=89795.000000
s hg38.chr5_KI270793v1_alt     75896 49 +    126136 TGTTAGAGAT-GG-GAGGCTGTAGGTTTGTTAGAG-ATGGGAGGCTGTAGGC
s gorGor5.CYUI01015805v1      145404 51 +    698298 TGTTAGAGATTGG-GAGGCTGTAGGCTTGTTAGAGGAAGGGAGGTTGTAGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572980 49 - 121039945 TCTTAGAGAT-GG-GAGGCTGTAGGCTTGTTAGAG-ATGGGAGGCTGTAGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529887 49 - 180051392 TGTTAGAGAT-GT-GAGGCTGTAGGCTTGTTAGAG-ATGGGAGGCTGTAGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263039 49 - 181584905 TGTTAGAGAT-GT-GAGGCTGTAGGCTTGTTAGAG-ATGGGAGGCTGTAGGC
i macFas5.chr6             T 293 C 0
s macNem1.NW_012012389v1      265245 50 -   1764207 TGTTAGAGAT-GCGGAGGCTGTAGGCTTGTGAGAG-ATGCGATGCTGTAGGC
i macNem1.NW_012012389v1   C 0 I 78
s chlSab2.chr4              90577980 49 -  91010382 TGTTAGAGAT-GG-GAGCCTGTAGGCTTGTTAGAG-ATGGGAGGTTGTGTGC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203857146 43 + 204313951 -GTTAGAGAC-GG-GACGCTGTAG----GTTAGAG-ATGGGACGCTGTGGG-
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532  0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=10370.000000
s hg38.chr5_KI270793v1_alt     75945 23 +    126136 TTGTTAGAGA--TGGGAGG-CTGTTA
s gorGor5.CYUI01015805v1      145455 26 +    698298 CTGTTAGAGGATTGGGAGGGCTGTAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573029 22 - 121039945 TTGTTAGAGA--AGGGAGG-CTGT-A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529936 22 - 180051392 TTGTTAAAGA--TGGGAGG-TTGTG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263088 22 - 181584905 TTGTTAAAGA--TGGGAGG-TTGTG-
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203857189 18 + 204313951 ---TTAGAGA--CAGGACG-CTGT--
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532  0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578029  0 -  91010382 C
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e colAng1.NW_012118799v1      200990 80 -    514179 I
e macNem1.NW_012012389v1      265295 78 -   1764207 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=25998.000000
s hg38.chr5_KI270793v1_alt     75968 32 +    126136 GGTTTGTT-AGAGATGGGAGGCTGTTAGGTTTA
s gorGor5.CYUI01015805v1      145481 27 +    698298 GGTTTGTTTAGAGATGGGAG------AGGCTTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573051 31 - 121039945 GGCTTGTT-AGAGATATGAGGTTGT-GGGCCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529958 31 - 180051392 TGCCTGTT-AGAGATGGGAAGCTGT-AGGCTTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263110 31 - 181584905 TGCCTGTT-AGAGATGGGAAGCTGT-AGGCTTC
i macFas5.chr6             C 0 C 0
s colAng1.NW_012118799v1      201070 31 -    514179 GGCTTGTT-AGAGATGTGAGGCTGC-ATGTTTG
i colAng1.NW_012118799v1   I 80 C 0
s calJac3.chr2             203857207 27 + 204313951 GGCTGGTT-AGAGACAGGACGCTGT-GGG----
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e aotNan1.NW_018503740v1    25429532  0 -  25620257 C
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578029  0 -  91010382 C
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e macNem1.NW_012012389v1      265295 78 -   1764207 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=21834.000000
s hg38.chr5_KI270793v1_alt     76000 16 +    126136 TTAGAGATGGGAGGCT
s gorGor5.CYUI01015805v1      145508  8 +    698298 TTAGAGGT--------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573082 16 - 121039945 TTAGAGATGTGAGGTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179529989 16 - 180051392 TTAAAGATGTGACACT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263141 16 - 181584905 TTAAAGATGTGACACT
i macFas5.chr6             C 0 I 244
s colAng1.NW_012118799v1      201101 16 -    514179 TTAGAGATGTGAGGCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857234 16 + 204313951 TTAGAGACGGGACACT
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429532 16 -  25620257 TTAGAGATGGGAGGCT
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578029  0 -  91010382 C
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e macNem1.NW_012012389v1      265295 78 -   1764207 I
e panPan2.chr5                678780 5527 + 183735486 T

a score=1910.000000
s hg38.chr5_KI270793v1_alt     76016 2 +    126136 GT
s nomLeu3.chr6             120573098 2 - 121039945 GT
i nomLeu3.chr6             C 0 T 76
s colAng1.NW_012118799v1      201117 2 -    514179 GT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857250 2 + 204313951 GT
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429548 2 -  25620257 GT
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578029 0 -  91010382 C
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e macNem1.NW_012012389v1      265295 78 -   1764207 I
e macFas5.chr6             181263157 244 - 181584905 I
e rheMac8.chr6             179530005 0 - 180051392 C
e gorGor5.CYUI01015805v1      145516 0 +    698298 C
e panPan2.chr5                678780 5527 + 183735486 T

a score=37378.000000
s hg38.chr5_KI270793v1_alt     76018 52 +    126136 TAGGTTTGTTAGAGAAGGG---AGGCTGTAGGTTTGT----TAGAGATGGGAGGCTG-----------TT
s gorGor5.CYUI01015805v1      145516 66 +    698298 ----TTTGTTAGAGGATGGGGTAGGCTGTAGGTTTGTGGTTTAGAGATGGGAGGCTGGGAGGGGGCTGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573024 51 - 121039945 TAGGCTTGTTAGAGAAGGG---AGGCTGTAGGCTTGT----TAGAGATATGAGGTTG-----------T-
i nomLeu3.chr6             T 76 T 125
s macFas5.chr6             181263401 52 - 181584905 TACACTTCTTAGAGATGTG---AGGCTGTAGGCTTGT----TAGAGATACGAGGTTG-----------TA
i macFas5.chr6             I 244 C 0
s colAng1.NW_012118799v1      201119 51 -    514179 -ACAGATGTTAGAGATGTG---AGGCTGTACACTTGT----TAGAGATGTGAGGCTG-----------TA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857252 42 + 204313951 -----AGGTTAGAGATGGG---ACGCTGTGG----GT----TAGAGACGGGACGCTG-----------T-
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429550 42 -  25620257 -----GGGTTAGAGATGGG---AGGCTGTGG----GT----TAGAGACGGGAGGCTG-----------T-
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578029  0 -  91010382 C
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e macNem1.NW_012012389v1      265295 78 -   1764207 I
e rheMac8.chr6             179530005  0 - 180051392 C
e panPan2.chr5                678780 5527 + 183735486 T

a score=2013.000000
s hg38.chr5_KI270793v1_alt     76070 2 +    126136 AG
s gorGor5.CYUI01015805v1      145582 2 +    698298 AG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572950 2 - 121039945 AG
i nomLeu3.chr6             T 125 C 0
s macFas5.chr6             181263453 1 - 181584905 -G
i macFas5.chr6             C 0 C 0
s colAng1.NW_012118799v1      201170 1 -    514179 -G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857294 1 + 204313951 -G
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429592 1 -  25620257 -G
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578029 0 -  91010382 C
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e macNem1.NW_012012389v1      265295 78 -   1764207 I
e rheMac8.chr6             179530005 0 - 180051392 C
e panPan2.chr5                678780 5527 + 183735486 T

a score=3608.000000
s hg38.chr5_KI270793v1_alt     76072 2 +    126136 GT
s gorGor5.CYUI01015805v1      145584 2 +    698298 GC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572952 2 - 121039945 GT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263454 2 - 181584905 GC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      265373 2 -   1764207 GT
i macNem1.NW_012012389v1   I 78 C 0
s colAng1.NW_012118799v1      201171 2 -    514179 GC
i colAng1.NW_012118799v1   C 0 T 177
s calJac3.chr2             203857295 2 + 204313951 GC
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429593 2 -  25620257 GC
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5             181339765 96 - 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e chlSab2.chr4              90578029 0 -  91010382 C
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e rheMac8.chr6             179530005 0 - 180051392 C
e panPan2.chr5                678780 5527 + 183735486 T

a score=3785.000000
s hg38.chr5_KI270793v1_alt     76074 1 +    126136 T
s panTro5.chr5             181339669 1 - 181907262 T
i panTro5.chr5             T 96 C 0
s panPan2.chr5             183056706 1 - 183735486 T
i panPan2.chr5             T 88 C 0
s gorGor5.CYUI01015805v1      145586 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572954 1 - 121039945 T
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181263456 1 - 181584905 T
i macFas5.chr6             C 0 T 300
s macNem1.NW_012012389v1      265375 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90578029 1 -  91010382 C
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200996 1 -    514179 T
i colAng1.NW_012118799v1   T 177 C 0
s calJac3.chr2             203857297 1 + 204313951 T
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429595 1 -  25620257 T
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274533 132 -  16742782 T
e rheMac8.chr6             179530005 0 - 180051392 C

a score=104913.000000
s hg38.chr5_KI270793v1_alt     76075 23 +    126136 TGTTAGAGATGGG-AGGCTGTAGG
s panTro5.chr5             181339670 23 - 181907262 TGTTAGAGATGGG-AGGCTGTAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183056707 23 - 183735486 TGTCAGAAATGCG-AGGCTGTAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145587 24 +    698298 TGTTAGAGATGGGAAGGCTGTAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572955 23 - 121039945 TGTTAGAGATGGG-AGGCTGTGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530005 23 - 180051392 TGTTAGAGATATG-AGGCTGTAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263157 23 - 181584905 TGTTAGAGATATG-AGGCTGTAGG
i macFas5.chr6             T 300 C 0
s macNem1.NW_012012389v1      265376 23 -   1764207 TGTTAGAGATGCG-AGGCTGTAGG
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90578030 23 -  91010382 TGTTAGAGATGGG-AGGCTGTAGG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      200997 23 -    514179 TGTTAGAGATGTG-AGGCTGTAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857298 22 + 204313951 GGTTAGAGACGGG-TGGCTGTGG-
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429596 22 -  25620257 GGTTAGAGATGGG-AGGCTGTGG-
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274533 132 -  16742782 T

a score=181661.000000
s hg38.chr5_KI270793v1_alt     76098 51 +    126136 C--------------------------TTGTTAGAGATGGG----------AGGC--TGTAGGTTTGTT----AGAGATG---GGAGGCTGTA-----GGC
s panTro5.chr5             181339693 51 - 181907262 C--------------------------TTGTTAGAGATGTG----------AGGT--TGTAGGCTTGTT----AGAGAAG---GGAGGCTGTA-----GGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183056730 51 - 183735486 C--------------------------TTGTTAGAGATGTG----------AGGT--TGTAGGCTTGTT----AGAGAAG---GGAGGCTGTA-----GGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145611 73 +    698298 T--------------------------TTCTTAGAGATGAGGTATTGTGGAAGGC--TGTAGGCTTGTTGTTAGGAGATGGGAGGAGGCTGTAGAAGGGAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572978 51 - 121039945 T--------------------------TTCTTAGAGATGGG----------AGGC--TGTAGGCTTGTT----AGAGATG---GGAGGCTGTA-----GGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530028 51 - 180051392 C--------------------------TTGTTAGAGATGCG----------ATGC--TGTAGGCTTGTT----AGAGATG---TGAGGCTGCA-----TGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263180 51 - 181584905 C--------------------------TTGTTAGAGATGCG----------ATGC--TGTAGGCTTGTT----AGAGATG---TGAGGCTGCA-----TGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      265399 77 -   1764207 CGTTGTTAGGATGTCGAGGCTGCAGTGTTGTTAGAGATGTG----------AGGC--TGCATGTTTGTT----AGAGATG---TGAGGCTGCA-----TGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274401 51 -  16742782 C--------------------------TTGTTAGAGATGTG----------AGGC--TGTAGGCTTGTT----AGAGATG---GGACGCTGTA-----AGC
i cerAty1.NW_012009470v1   T 132 I 25
s chlSab2.chr4              90578053 67 -  91010382 -CTTCTTAAAGATGTGACAC-------TTGTTAGAGATGTG------------GC--TGTAGGCTTGTT----AGAGATG---TGAGGCTGTA-----GGC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201020 53 -    514179 --------------------------CTTGTTAGACATGCA----------AGGCTATATAGGCTTGTT----AGAGATG---AGAGGCTGTA-----GGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857320 42 + 204313951 -----------------------------GTTAGAGATGGG----------AGGC--CGTGG----GTT----AGAGATG---GGAGGCCGTG-----G--
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429618 45 -  25620257 --------------------------CTCGTTAGAGATGGG----------AGGC--TGTGG----GTT----AGAGACG---GGAGGCTGTA-----G--
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=104601.000000
s hg38.chr5_KI270793v1_alt     76149 23 +    126136 TT-----------------------------------------------------GTTAGAGATGGGAGGCTGTAG
s panTro5.chr5             181339744 23 - 181907262 TT-----------------------------------------------------GTTAGAGATGGGAGGTTGTAG
i panTro5.chr5             C 0 T 98
s panPan2.chr5             183056781 23 - 183735486 TT-----------------------------------------------------GTTAGAGATGGGAGGTTGTAG
i panPan2.chr5             C 0 T 98
s gorGor5.CYUI01015805v1      145684 23 +    698298 CT-----------------------------------------------------GTTAGAGAAGGGAGGCTGTAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573029 23 - 121039945 TT-----------------------------------------------------GTTAGAGAAGGGAGGCTGTAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530079 23 - 180051392 TT-----------------------------------------------------GTTAGAGATGTGAGGCTGCAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263231 23 - 181584905 TT-----------------------------------------------------GTTAGAGATGTGAGGCTGCAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      265476 76 -   1764207 TTGTTAGACGACTGTGAGCTGCGATGTTGTTAAAGATGCGAGGCTGTAGGCTTGGGTTAGAGATGTGAGGCTGCAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274477 23 -  16742782 TT-----------------------------------------------------GTTAGAGATGTGAGGCTGTAG
i cerAty1.NW_012009470v1   I 25 C 0
s chlSab2.chr4              90578120 23 -  91010382 TT-----------------------------------------------------GTTAGAGATGTGAGGCTGCAT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201073 23 -    514179 TT-----------------------------------------------------GTTAGAGATGTGAGGCTGCAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857362 21 + 204313951 -------------------------------------------------------GTTAGAGACGGGAGGTCGTGG
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429663 21 -  25620257 -------------------------------------------------------GTTAGAGATGGGAGGCTGTGG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=55805.000000
s hg38.chr5_KI270793v1_alt     76172 20 +    126136 GT---TTG--TTAGAGATG---GGAGGC
s gorGor5.CYUI01015805v1      145707 28 +    698298 GTGGCTTGGTTTAGAGATGAGGGGAGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573052 20 - 121039945 ---GCTTG--TTAGAGATA---TGAGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530102 20 - 180051392 ---GTTTG--TTAGAGATG---TGAGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263254 20 - 181584905 ---GTTTG--TTAGAGATG---TGAGGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      265552 20 -   1764207 ---GTTTG--TTAGAGATG---TGAGGC
i macNem1.NW_012012389v1   C 0 I 85
s cerAty1.NW_012009470v1      274500 20 -  16742782 ---GCTTG--TTAGAGATA---CGAGGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578143 20 -  91010382 ---GTTTG--TTAGAGATG---TGAGGC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201096 20 -    514179 ---GTTTG--TTAGAGATG---TGAGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857383 16 + 204313951 -------G--TTAGAGACG---GGTGGC
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429684 16 -  25620257 -------G--TTAGAGACG---GGAGGC
i aotNan1.NW_018503740v1   C 0 C 0
e panTro5.chr5             181339767 98 - 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e panPan2.chr5             183056804 98 - 183735486 T

a score=4498.000000
s hg38.chr5_KI270793v1_alt     76192 29 +    126136 TGTT-AGGTTTG-TTAGAGATGGGAGGCTG--T-
s gorGor5.CYUI01015805v1      145735 29 +    698298 TGT--AGGTTTGCTTAGAGATGGGAGGCTG--G-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573072 28 - 121039945 TGT--GGGCCTG-TTAGAGATGTGAGGTTG--T-
i nomLeu3.chr6             C 0 T 135
s rheMac8.chr6             179530122 27 - 180051392 TGC--ATGTTTG-TTAGAGATGTGAGGCTG----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263274 27 - 181584905 TGC--ATGTTTG-TTAGAGATGTGAGGCTG----
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      274520 28 -  16742782 TGT--AGGCTTG-TTAGAGATGTGAGGTTGT---
i cerAty1.NW_012009470v1   C 0 T 146
s chlSab2.chr4              90578163 21 -  91010382 ---------TTG-TTAGAGATGTGAGGCTG-T--
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201116  3 -    514179 --------------------TGT-----------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857399 26 + 204313951 ---TGTGGCTGG--TAGAGACGGGAGGCTG---T
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25429700 27 -  25620257 ---TGTGGCTGG-TTAGAGACGGGAGGCTG---T
i aotNan1.NW_018503740v1   C 0 I 167
e panTro5.chr5             181339767 98 - 181907262 T
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e macNem1.NW_012012389v1      265572 85 -   1764207 I
e panPan2.chr5             183056804 98 - 183735486 T

a score=11302.000000
s hg38.chr5_KI270793v1_alt     76221 16 +    126136 TAGGTTTGTTAGAGAA
s gorGor5.CYUI01015805v1      145764 14 +    698298 TAGGCTG--TAGAGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179530149 16 - 180051392 TAGGCTTGTTAGAGAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263301 16 - 181584905 TAGGCTTGTTAGAGAT
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90578184 15 -  91010382 -AGGCTTGTTAGACAT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201119 15 -    514179 -ACAGATGTTAGAGAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857425 11 + 204313951 -----GGGTTAGAGAC
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339767 98 - 181907262 T
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573100 135 - 121039945 T
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274548 146 -  16742782 T
e macNem1.NW_012012389v1      265572 85 -   1764207 I
e panPan2.chr5             183056804 98 - 183735486 T

a score=18768.000000
s hg38.chr5_KI270793v1_alt     76237 14 +    126136 GGGAGGCTGTAGGT
s gorGor5.CYUI01015805v1      145778 11 +    698298 GAG---CTGTAGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120572965 14 - 121039945 GGGAGGCTGTGGGT
i nomLeu3.chr6             T 135 C 0
s rheMac8.chr6             179530165 14 - 180051392 GCGAGGCTGTAGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263317 14 - 181584905 GCGAGGCTGTAGGC
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90578199 14 -  91010382 GCAAGGTTGCAGGC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201134 14 -    514179 GTGAGGCTGTACAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857436 14 + 204313951 GGGAGGCCGTGGGT
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339767 98 - 181907262 T
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e cerAty1.NW_012009470v1      274548 146 -  16742782 T
e macNem1.NW_012012389v1      265572 85 -   1764207 I
e panPan2.chr5             183056804 98 - 183735486 T

a score=83873.000000
s hg38.chr5_KI270793v1_alt     76251 25 +    126136 TTGTTAGAGATGGGAGGCTGTAGGC
s panPan2.chr5             183056706 25 - 183735486 TTGTCAGAAATGCGAGGCTGTAGGC
i panPan2.chr5             T 98 C 0
s gorGor5.CYUI01015805v1      145789 23 +    698298 CTGTTAGAGAT--GAGGCTGTAGGA
i gorGor5.CYUI01015805v1   C 0 I 9
s nomLeu3.chr6             120572979 25 - 121039945 TTCTTAGAGATGGGAGGCTGTAGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530179 25 - 180051392 TTGTTAGAGATGTGAGGCTGCATGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263331 25 - 181584905 TTGTTAGAGATGTGAGGCTGCATGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      265657 25 -   1764207 TTGTTAGAGATGTGAGGCTGCATGT
i macNem1.NW_012012389v1   I 85 C 0
s cerAty1.NW_012009470v1      274402 25 -  16742782 TTGTTAGAGATGTGAGGCTGTAGGC
i cerAty1.NW_012009470v1   T 146 C 0
s chlSab2.chr4              90578213 25 -  91010382 TTGTTAGAGACGGGACGCTGTAGGC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201148 25 -    514179 TTGTTAGAGATGTGAGGCTGTAGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857450 20 + 204313951 ----TAGAGACGGGAGGCCGTGGG-
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181339767 98 - 181907262 T
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=116015.000000
s hg38.chr5_KI270793v1_alt     76276 28 +    126136 TTGTTAGAGATGGGAGG-CTGTAGGCTTG
s panTro5.chr5             181339669 28 - 181907262 TTGTTAGAGATGGGAGG-CTGTAGGCTTG
i panTro5.chr5             T 98 C 0
s panPan2.chr5             183056731 28 - 183735486 TTGTTAGAGATGTGAGG-TTGTAGGCTTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145821 28 +    698298 TTGTTAGAGATGGGAGGACTGTAGGC-TG
i gorGor5.CYUI01015805v1   I 9 C 0
s nomLeu3.chr6             120573004 28 - 121039945 TTGTTAGAGATGGGAGG-CTGTAGGCTTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530204 28 - 180051392 TTGTTAGAGATGTGAGG-CTGTACACTTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263356 28 - 181584905 TTGTTAGAGATGTGAGG-CTGTACACTTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      265682 28 -   1764207 TTGTTAGAGATGCGAGG-CTGTAGGCTTG
i macNem1.NW_012012389v1   C 0 I 2887
s cerAty1.NW_012009470v1      274427 28 -  16742782 TTGTTAGAGATGGGACG-CTGTAAGCCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578238 28 -  91010382 TTGTTAGAGATGTGAGA-CTGTACACTTG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201173 28 -    514179 TTGTTAGCCATGCGAGG-CTGCAGGCTTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857470 21 + 204313951 ---TTAGAGACGGGAGG-CCGTGGG----
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=75537.000000
s hg38.chr5_KI270793v1_alt     76304 22 +    126136 TTAGAGATGGGAGGCTGTAGGC
s panTro5.chr5             181339697 22 - 181907262 TTAGAGATGTGAGGTTGTAGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183056759 22 - 183735486 TTAGAGAAGGGAGGCTGTAGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145849 22 +    698298 TTAGAGATGGGAGGATGTAGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573032 22 - 121039945 TTAGAGAAGGGAGGCTGTAGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530232 22 - 180051392 TTAGAGATGTGAGGCTGTACAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263384 22 - 181584905 TTAGAGATGTGAGGCTGTACAC
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      274455 22 -  16742782 TTAGAGATGTGAGGCTGTACAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578266 22 -  91010382 TTAGAGATGTAAGGCTGTAGGC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201201 22 -    514179 TTTGAGATGGGCGGCTGTAGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857491 21 + 204313951 TTAGAGTCGGGAAGCTGTGGC-
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e macNem1.NW_012012389v1      265710 2887 -   1764207 I

a score=80424.000000
s hg38.chr5_KI270793v1_alt     76326 23 +    126136 TTGTTAGAGAT-GGGAGGCTGTAG
s panTro5.chr5             181339719 23 - 181907262 TTGTTAGAGAA-GGGAGGCTGTAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183056781 23 - 183735486 TTGTTAGAGAT-GGGAGGTTGTAG
i panPan2.chr5             C 0 T 10
s gorGor5.CYUI01015805v1      145871 24 +    698298 TTGTTAGAGATGGGGAGGCTGTAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573054 15 - 121039945 TTGTTAGAGAT-ATGA--------
i nomLeu3.chr6             C 0 I 8
s rheMac8.chr6             179530254 23 - 180051392 TTCTTAGAGAT-GTGAGGCTGTAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263406 23 - 181584905 TTCTTAGAGAT-GTGAGGCTGTAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      268597 23 -   1764207 TTGTTAGAGAC-GGGAGGCTGTAG
i macNem1.NW_012012389v1   I 2887 C 0
s cerAty1.NW_012009470v1      274477 23 -  16742782 TTGTTAGAGAT-GTGAGGCTGTAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578288 24 -  91010382 TTGTTAGAGATAACGAGGTTGCAG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201223 23 -    514179 TTATTAGCCAT-GCGAGGCTGCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857512 19 + 204313951 ---TTAGAGAT-GGGAGGCTGTG-
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M

a score=57515.000000
s hg38.chr5_KI270793v1_alt     76349 14 +    126136 GCTTGTTAGAGATG
s panTro5.chr5             181339742 14 - 181907262 GCTTGTTAGAGATG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145895 14 +    698298 GCCTGTTAGAGAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573077 14 - 121039945 GCCTGTTAGAGATG
i nomLeu3.chr6             I 8 C 0
s rheMac8.chr6             179530277 14 - 180051392 GCTTGTTAGAGATA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263429 14 - 181584905 GCTTGTTAGAGATA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      268620 14 -   1764207 GCTTGTTAGAGATG
i macNem1.NW_012012389v1   C 0 T 4178
s cerAty1.NW_012009470v1      274500 14 -  16742782 GCTTGTTAGAGATA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578312 14 -  91010382 GCTTGTTAGAGATA
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201246 14 -    514179 GCTTGTTAGAGATG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857531 11 + 204313951 GC---TTAGAGATG
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e panPan2.chr5             183056804 10 - 183735486 T

a score=-3367.000000
s hg38.chr5_KI270793v1_alt     76363 13 +    126136 GGAGGCTGGGCTG------
s panTro5.chr5             181339756  1 - 181907262 G------------------
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145909  8 +    698298 G-----GAGGCTG------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573091  1 - 121039945 T------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530291  8 - 180051392 -----CGAGGTTG------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263443  8 - 181584905 -----CGAGGTTG------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264456  8 -   1764207 -----GGAGGCTG------
i macNem1.NW_012012389v1   T 4178 C 0
s cerAty1.NW_012009470v1      274514  8 -  16742782 -----CGAGGTTG------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578326  8 -  91010382 -----CGAGGTTG------
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201260  8 -    514179 -----GGAGGCTG------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857542 14 + 204313951 -----GGAGGCTGTGGCTG
i calJac3.chr2             C 0 I 16
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e saiBol1.JH378155          16016136 1829 +  16417988 M
e canFam3.chr34             11725205 204 +  42124431 I
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e panPan2.chr5             183056804 10 - 183735486 T

a score=57295.000000
s hg38.chr5_KI270793v1_alt     76376 18 +    126136 TAGG-CTTGTTA-GAGATGT
s gorGor5.CYUI01015805v1      145917 19 +    698298 TAGGCCTTGTTA-GAGATGT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179530299 18 - 180051392 TAGG-CTTGTTA-GAGATGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263451 18 - 181584905 TAGG-CTTGTTA-GAGATGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264464 18 -   1764207 TAGG-CTTGTTA-AAGATGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274522 18 -  16742782 TAGG-CTTGTTA-GAGATGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578334 18 -  91010382 TGGG-CTTGTTA-GAGATGT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      201268 18 -    514179 TAGG-CTTGTTA-GAGATGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857572 19 + 204313951 TGGG-CTTGTTAGGGGATGT
i calJac3.chr2             I 16 C 0
s saiBol1.JH378155          16017972 19 +  16417988 TGGG-CTTGTCAGGGGATGT
i saiBol1.JH378155         M 1829 C 0
e panTro5.chr5             181339757  0 - 181907262 C
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e canFam3.chr34             11725205 204 +  42124431 I
e nomLeu3.chr6             120573092  0 - 121039945 C
e manLeu1.NW_012110441v1      171793 1071 -    438239 M
e panPan2.chr5             183056804 10 - 183735486 T

a score=64902.000000
s hg38.chr5_KI270793v1_alt     76394 8 +    126136 GAGGTTGT
s panTro5.chr5             181339757 8 - 181907262 GAGGTTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183056794 8 - 183735486 GAGGTTGT
i panPan2.chr5             T 10 C 0
s gorGor5.CYUI01015805v1      145936 8 +    698298 GAGGTTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573092 8 - 121039945 GAGGTTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530317 8 - 180051392 GAGGTTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263469 8 - 181584905 GAGGTTGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      264482 8 -   1764207 GAGGTTGT
i macNem1.NW_012012389v1   C 0 I 5316
s cerAty1.NW_012009470v1      274540 8 -  16742782 GAGGTTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578352 8 -  91010382 GAGGTTGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      172895 8 -    438239 GAGGTTGT
i manLeu1.NW_012110441v1   M 1071 C 0
s colAng1.NW_012118799v1      201286 8 -    514179 GAGGTTGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857591 8 + 204313951 AAGGCTGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16017991 8 +  16417988 GAGGCTGT
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e canFam3.chr34             11725205 204 +  42124431 I

a score=227277.000000
s hg38.chr5_KI270793v1_alt     76402 41 +    126136 AGCTGCAGTTTTCATTTTTCTCCAGCTGACGCTGTCACCTG
s panTro5.chr5             181339765 41 - 181907262 AGCTGCAGTTTTCATTTTTCTCCAGCTGACACTGTCACCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183056802 41 - 183735486 AGCTGCAGTTTTCATTTTTCTCCAGCTGACACTGTCACCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145944 41 +    698298 AGCTGCAGTTTTCATTTTTCTCCAGCTGACGATGTCACCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573100 41 - 121039945 AGCTGCAGTTTTCATTTTTCTCTGGCTGACGCTGTCACCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530325 41 - 180051392 AGCTGCAGTTTTCATTTTTCTCTGACTGACGCTATCACCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263477 41 - 181584905 AGCTGCAGTTTTCATTTTTCTCTGACTGACGCTATCACCTG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      274548 41 -  16742782 AGCTGCAGTTTTCATTTTTCTCTGACTGACGCTATCACCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578360 41 -  91010382 AGCTGCAGTTTTCATTTTTCTCTGACTGACGCTAGCACCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      172903 41 -    438239 AGCTGCAGTTTTCATTTTTCTCTGACTGACGCTATCACCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      201294 41 -    514179 AGCTGCAGTTTTCGTTTTTCTCTGCCTGACGCCATCACCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857599 40 + 204313951 AGCTGCACTTTCTGCTTTTCTCTGGCTGGCGCTCCCACCC-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16017999 40 +  16417988 GGCTGCAGTTTCTGCCTTTCTCTGACCGACGCCCCTCCTT-
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25429727 167 -  25620257 I
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e canFam3.chr34             11725205 204 +  42124431 I
e macNem1.NW_012012389v1      264490 5316 -   1764207 I

a score=31718.000000
s hg38.chr5_KI270793v1_alt     76443 5 +    126136 TTGCC
s panTro5.chr5             181339806 5 - 181907262 TTGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183056843 5 - 183735486 TTGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145985 5 +    698298 TTGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573141 5 - 121039945 TTGCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530366 5 - 180051392 TCGCT
i rheMac8.chr6             C 0 I 5
s macFas5.chr6             181263518 5 - 181584905 TCGCT
i macFas5.chr6             C 0 I 5
s cerAty1.NW_012009470v1      274589 5 -  16742782 TCGCT
i cerAty1.NW_012009470v1   C 0 I 5
s chlSab2.chr4              90578401 5 -  91010382 TCGCT
i chlSab2.chr4             C 0 I 5
s manLeu1.NW_012110441v1      172944 5 -    438239 TCGCT
i manLeu1.NW_012110441v1   C 0 I 5
s colAng1.NW_012118799v1      201335 5 -    514179 TCGCT
i colAng1.NW_012118799v1   C 0 I 5
s calJac3.chr2             203857639 5 + 204313951 TTGCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16018039 5 +  16417988 TTGCC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25429894 5 -  25620257 TTGCC
i aotNan1.NW_018503740v1   I 167 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e canFam3.chr34             11725205 204 +  42124431 I
e macNem1.NW_012012389v1      264490 5316 -   1764207 I

a score=77039.000000
s hg38.chr5_KI270793v1_alt     76448 10 +    126136 ATCAGAAATC
s panTro5.chr5             181339811 10 - 181907262 ATCAGAAATC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183056848 10 - 183735486 ATCAGAAATC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      145990 10 +    698298 ATCAGAAATC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573146 10 - 121039945 ATCAGAAATC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530376 10 - 180051392 ATCAGAAATC
i rheMac8.chr6             I 5 C 0
s macFas5.chr6             181263528 10 - 181584905 ATCAGAAATC
i macFas5.chr6             I 5 C 0
s macNem1.NW_012012389v1      269806 10 -   1764207 ATCAGAAATC
i macNem1.NW_012012389v1   I 5316 C 0
s cerAty1.NW_012009470v1      274599 10 -  16742782 ATCAGAAATC
i cerAty1.NW_012009470v1   I 5 C 0
s chlSab2.chr4              90578411 10 -  91010382 ATCAGAAATC
i chlSab2.chr4             I 5 C 0
s manLeu1.NW_012110441v1      172954 10 -    438239 ATCAGAAATC
i manLeu1.NW_012110441v1   I 5 C 0
s colAng1.NW_012118799v1      201345 10 -    514179 ATCAGCAATC
i colAng1.NW_012118799v1   I 5 C 0
s calJac3.chr2             203857644 10 + 204313951 ATCGGAAATC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16018044  8 +  16417988 GTTGGAAA--
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25429899 10 -  25620257 GTCGGAAATC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e cebCap1.NW_016108158v1      100502 1232 +    298490 I
e canFam3.chr34             11725205 204 +  42124431 I

a score=3993594.000000
s hg38.chr5_KI270793v1_alt     76458 459 +    126136 TCTCTGTCATCATCTGGTGTTTTCTTTACCTCTGAAGTTAACAGCCACTGTAGATGCTTCTCCTGGGTCCTCCACCCGGAGTCCCCTCACAGCCCACCCAGGGGACCCTTATTTCTCCTGGTCAAGCCTGGGTCCTGGATGTGACATCTTTTGATGAAAATCttttttatatattttatttatttattca----tttttgagatgaagtttcactcttattgcccaggctggagtgcaatggcgtgacctcggctcactgcaacctccacct------------------------cctgggatcaagtgattctcctgcccccacctcccaagtagctgggatgacgggcatatatcaccatgcccggctaatttt-gtatatttagtagagatggggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccgcctcggcctcccaaagttctgggattacaagtgt
s panTro5.chr5             181339821 454 - 181907262 TCTCTGTCATCATCTGGTGTTTTCTTTACCTCTGAAGTTA-CAGCCACTGTAGATGCTTCTCCTGGGTCCTCCACCCTGAGTCCCCTCACAGCCCACCCAGGGGGCCCTTATTTCTCCTGGTCAAGCCTGGGTCCTGGATGTGACATCTTTTGATGAAAATCttttttatatattttatttatttatt--------tttgagatgaagtttcactcttgttgcccaggctggagtgcaatggcatgacctcggctcactgcaacctccacct------------------------cccgggatcaagtgattctcctgcccccacctcccaagtagctgggatgacgggcatatatcaccatgcctggctaatttt-gtgtatttagtagagatggggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccgcctcggcctcccaaagttctgggattacaagtgt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183056858 454 - 183735486 TCTCTGTCATCATCTGGTGTTTTCTTTACCTCTGAAGTTA-CAGCCACTGTAGATGCTTCTCCTGGGTCCTCCACCCTGAGTCCCCTCACAGCCCACCCAGGGGGCCCTTATTTCTCCTGGTCAAGCCTGGGTCCTGGATGTGACATCTTTTGATGAAAATCttttttatatattttatttatttatt--------tttgagatgaagtttcactcttgttgcccaggctggagtgcaatggcatgacctcggctcactgcaacctccacct------------------------cccgggatcaagtgattctcctgcccccacctcccaagtagctgggatgacgggcatatatcaccatgcctggctaatttt-gtgtatttagtagagatggggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccgcctcggcctcccaaagttctgggattacaagtgt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      146000 458 +    698298 TCTCTGTCATCATCTGGTGTTGTCTTTACCTGTGAAGTCA-CAGCCACTGTAGATGCTTCTCCTGGCTCCTCCACCCTGAGTCCCCTCACAGCCCACCCAGGGAACCCTTATTTCTCCTGGTCAAGCCTGGGTCCTGGATGTGACATCTTTTGATGAAAATAttttttatatattttatttatttattta----tttttgagatgaagtttcactcttgttgcccaggctggagtgcaatggcatgacctcggctcactgcaacctccacct------------------------cccgggatcaagtgattctcctgcccccacctcccaagtagctgggatgacgggcatatatcactatacccggctaatttt-gtatatttagtagagatggggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccgccttggcctcccaaagttctgggattacaagtgt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573156 475 - 121039945 TCTCTGTCATCATCTGGTGTTTTCTCTACCTCTGAAGTTA-CAGCCACTGTAGATGCTTCTCCTGGGTCCTCCGCCCTGAGTCCCCTCACAGCCCACCCAGGGGACCCTTATTTCTCCTGGTCAAG-------CCTGGATGTGACATCTTTTGATGAAAATCttttttatatattttatttatttattta----tttttgagatgaaatttcactcttgttgcgcaggctggagtgcaatggtgcaatcttggctgactgcaacctccacctcccaggatcaagtgattctcctgccccaggatcaagtgattctcctgcccccacctcccaagtagctgggatgatgggcatatatcaccatgcccggctaatttt-gtatatttagtagagatggggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccgccttggcctcccaaagttctgggattacaagtgt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530386 462 - 180051392 TCTCTGTCATCATATGGTGTTTTCTCTGCCTCTGAAGTTA-CAGCCACTGTAGCTGCTTCTCCTGGGTCCACCGCCCTGAGTCCCCTCACAACCCGCCCAGCGGCCCTTTATTTCTTCTGGTCAAGCCTGGGTCCTGGATGTGACATCTTTTGATGAAAATCTTTTGTATATAtcttatttatttatttgtttgtttttgagacaaagtttcactcttgttgcccaggctggagtgcaatgacgtgatctcagctcactgcaacctctgccc------------------------cctgggattaagtgattctcctgcctcagcctcccaagttgttgggatgatgggcatgcatcaccatgcccagctaatttt-gtatatttaatagagacagggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccacctcggcctcccaaagttctgggattacaagcat
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181263538 462 - 181584905 TCTCTGTCATCATATGGTGTTTTCTCTGCCTCTGAAGTTA-CAGCCACTGTAGCTGCTTCTCCTGGGTCCACCGCCCTGAGTCCCCTCACAACCCGCCCAGCGGCCCTTTATTTCTCCTGGTCAAGCCTGGGTCCTGGATGTGACATCTTTTGATGAAAATCTTTTGTATATAtcttatttatttatttgtttgtttttgagacaaagtttcactcttgttgcccaggctggagtgcaatgacgtgatctcagctcactgcaacctctgccc------------------------cctgggattaagtgattctcctgcctcagcctcccaagttgttgggatgatgggcatgcatcaccatgcccagctaatttt-gtatatttaatagagacagggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccacctcggcctcccaaagttctgggattacaagcat
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      269816 461 -   1764207 TCTCTGTCATCATATGGTGTTTTCTCTGCCTCTGAAGTTA-CAGCCACTGTAGCTGCTTCTCCTGGGTCCACCGCCCTGAGTCCCCTCACAACCCGCCCAGCGGCCCTTTATTTCT-CTGGTCAAGCCTGGGTCCTGGATGTGACATCTTTTGATGAAAATCTTTTGTATATAtcttatttatttatttgtttgtttttgagacaaagtttcactcttgttgcccaggctggagtgcaatgacatgatctcggctcactgcaacctctgccc------------------------cctgggattaagtgattctcctgcctcagcctcccaagttgttgggatgatgggcatgcatcaccatgcccagctaatttt-gtatatttaatagagacagggtttcaccactttggtcaggctggtctcaaacttttgacctcagttgatccacccacctcggcctcccaaagttctgggattacaagcat
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      274609 462 -  16742782 TCTCTGTCATCATATGGTGTTTTCTCTGTCTCTGAAGTTA-CAGCCACTGTAGCTGCTTCTCCTGGGTCCACCGCCCTGAGTCCCCTCACAACCCGCCCAGCGGCTCCTTATTTTTCCTGGTTAAGCCTGGGTCCTGGATGTGACATCTTTTGATGAAAATCTTTTGTATATAtcttatttatttacttgtttgtttttgagacaaggtttcactcttgttgcccaggctggcatgcaatgaagtgatctcggctcactgcaacctctgctc------------------------cctgggatcaagcgattctcctgcctcagcctcccaagttgttgggatgacaggcatgcatcaccatgcccagctaatttt-gtatatttagtagagacagggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccaccttggcctcccaaagttctgggattacaagcat
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578421 462 -  91010382 TCTCTGTCATCATGTGGTGTTTTCTCTGCCTCTGAAGTTA-CAGCCACTGTAGCTGCTTCTCCTGGGTCCACCGCCCTGAGTCCCCTCACAACCCACCCAGTGGCTCCTTATTTTTCCTGGTCGAGCCTGGGTCCTGGATGTGACATCTTTTGATGAAAATCTTTTGTATATAtcttatttatttacttgtttgtttttgagacaaagtttcactcttgttgcccaggctggcgtgcaatgaaatgatctcggcccactgcaacctctgctc------------------------cctgggatcaagcgattctcctgcctcagcctcccaagttgttgggatgacgggcatgcatcaccatgcccagctaatttt-gtatatttagtagagacagggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccacctcggcctcccaaagttctgggattacaagcat
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      172964 462 -    438239 TCTCTGTCATCATGTGGTGTTTTCTCTGCCTCTGAAGTTA-CAGCCACTGTAGCTGCTTCTCCTGGGTCCACCGCCCTGAGTCCCCTCACAACCCGCCCAGCGGCCCTTTATTTCTCCTGGTCAAGTCTGGGTCCTGGATGTGACATCTTTTGATGAAAATCTTTTGTATATAtcttatttatttatttgtttgtttttgagacaaagtttcactcttgttgcccaggctggcgtgcaatgaagtgatctcagctcactgcaacctctgctc------------------------cctgggatcaaacgattcttctgcctcagcctcccaagttgttgggatgacaggcatgcatcaccatgcccagctaatttt-gtatatttagtagagacagggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccaccttggcctcccaaagttctgggattacaagcat
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      201355 460 -    514179 TCTCTGTCATCACACGGTGTTTTCTCTGCCTCTGAAGTTA-CAGCCACTGTAGCTGCTTCTCCTAGGTCCACCGCCCTGAGTCCCCTCACAACCCACCCAGCAGCTCCTTATTTCTCCTGGTCAAGCCTGGGTCCTGGATGTGACATA--TTGACGAAAATCTTTTTTATGTAtcttatttatttatttatttgtttttgagacaagatttcactcttgttgcccaggctggggtgcaatgacgttatctcggctcactgcaacctctgcct------------------------cttcagatcaagcgattctcctgcctcagcctcccaagttgttgggatgatgggcatgcatcaccatgcccagctaatttt-gtgtatttagtagagacagggtttcaccactttggtcaggctggtctcaaacttttgacctcaggtgatccacccacctcggcctcccaaagttctgggattacaagcat
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203857654 437 + 204313951 TCTCTGTCATCATCTGGTGTTTTCTCTGCCTCTGACGTTG-CAACCACTGAAGCTGCTTCTCCTGGGTCCACCACCCTGAGTCCCCTCACAGCC--ACCAGGGGCCCCTTATTTCTCGTCCTCTAGCCTGGGTCCTGGGTGCAACGTCTCTTGATGAAAAtctttgtttta-----tatttatttatttc----cttttgagacacagtttcccccttgttgcccaggctggaatgcaatggcatgatattggctca---------------------------------------cctcagtccaagcgattgtcctgcctcagccttcggagtagctgggattacaggcatgcaccaccatgcctggctaatttttgtacttttagtagagatggggtttcaccatgttgctcagactgatctcaaattcctgacctcgagtgatccacccacctcggcctcccaaatcgctgggattacaggtgt
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16018052 439 +  16417988 TCTCTGTCGTCATGTGGTGTTTCCTCTGCCTCTGACGTTG-CAGCCGCTGCAGCTGCTTGTCCTGGTTCCACCGCCCTGAGTCCCCTCACAGCC--ACCAGGGG-CCCTTAGTTCTCGTCCTCTAGCCTGGGTCCTGGATGCAACATCTCTTGATGAAAAtctttgttttatat-ttatttatttattta----tttttgagatagagtttccctcttgctgcccaggctggaatgccatggcatgatattggctta---------------------------------------cctgggttcaagcgattct-ctgcctcagcctttggagtagctgtgattacaggcacgcaccatcacgcctggctaatctttgtacttttagtagagatggggtttcaccatgttggtcaggctgatctctaattcctgacctcaagtgatccacccacctcggcctcccaagttgccgggattacaggtgt
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      101734 437 +    298490 TCTCTGTCGTCACCTGGTGTTTCCTCTGCCTCTGACGTTG-CAGCCGCTGCAGCTGCTTCTCCTGAGTCCACCGCCCTGAGTCCCCTCACAGCC--ACCAGGGGCCCCTTATTTCTTGTCCTCTAGCCTGGGTCCTGGATGCAACATCTCTTGATGAAAAtctttgtttta-----tatttatttattta----tttttgagacagagtttccctcttgttgcccaggctggaatgcaatggcatgatattggctca---------------------------------------cctgggttcaagtgattctcctgcctcagcctttggagtagctgggtttacaggcatgcaccaccacgcctggctgatttttgtacttttagtagagatggggtttcaccatgttggtcaggctgatctcaaattcctgacctcaagtgatacgcccacctcggcctcccaaattgctgggattacaggtgt
i cebCap1.NW_016108158v1   I 1232 C 0
s aotNan1.NW_018503740v1    25429909 441 -  25620257 TCTGTGTCACCCTCTGGTGTATCCTCTGCCTCTGACGTTG-CAGCCGCTGCAGCTGCTTCTCCTGGGTCCACAGCCCTGAGTCCCCTCACAGCC--ACCAGGGGCCCCTTATTTCTCATCCTCCTGCCTGGGTCCTGGATGCAACGTCTCTTGATGAAAATCTTTGttttatat-tcattcatttattta----tttttgagacagagtttccctcttgttacccaggctggaatgcaatggcatgacattggctca---------------------------------------cctgggttcaagcgattctcctgcctcagccttcggcgtagctgggattacaggcatgcaccaccacgcctggctaattttggtacttttagtagagatgggatttccccatgttggtcaggctgatctcaaattcctgacctcaagtgatccgcccacgtcagcctcccaaattgctgggaatacaggtgt
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e canFam3.chr34             11725205 204 +  42124431 I

a score=141167.000000
s hg38.chr5_KI270793v1_alt     76917 15 +    126136 gagccactgcgcctg
s panTro5.chr5             181340275 15 - 181907262 gagccactgcgcctg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183057312 15 - 183735486 gagccactgcgcctg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      146458 15 +    698298 gagccactgctcctg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573631 15 - 121039945 gagccactgtgcctg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530848 15 - 180051392 gagccaccgcgcctg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181264000 15 - 181584905 gagccaccgcgcctg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      270277 15 -   1764207 gagccaccgcgcctg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      275071 15 -  16742782 gagccaccgcgcctg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578883 15 -  91010382 gagccaccgcgcctg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      173426 15 -    438239 aagccaccgcgcctg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      201815 15 -    514179 gagccaccgtgcctg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203858091 15 + 204313951 gagcctccacaccca
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16018491 15 +  16417988 gagccaccacacccg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      102171 15 +    298490 gagccactgcaccca
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25430350 15 -  25620257 gagccaccacactca
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11725409 15 +  42124431 GACCCATCCCACTTG
i canFam3.chr34            I 204 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I

a score=21000.000000
s hg38.chr5_KI270793v1_alt     76932 2 +    126136 gc
s panTro5.chr5             181340290 2 - 181907262 gc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183057327 2 - 183735486 gc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      146473 2 +    698298 gc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573646 2 - 121039945 gc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530863 2 - 180051392 gc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181264015 2 - 181584905 gc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      270292 2 -   1764207 gc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      275086 2 -  16742782 gc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90578898 2 -  91010382 gc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      173441 2 -    438239 gc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      201830 2 -    514179 gc
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203858106 2 + 204313951 gc
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      102186 2 +    298490 gc
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25430365 2 -  25620257 gc
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1884756 174 -   2165740 I
e saiBol1.JH378155          16018506 0 +  16417988 C
e canFam3.chr34             11725424 0 +  42124431 C

a score=931030.000000
s hg38.chr5_KI270793v1_alt     76934 120 +    126136 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGCTCTAGGACAGGAATGAA-AAACCACGGATTCTGGTGCAGTAACCAACTGAGAGCCACTCAGAACTGAGAA-------TCACCTAAATTTAGAG
s panTro5.chr5             181340292 120 - 181907262 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGCTCTAGGACAGGAATGAA-AAACCACGGATTCTGGTGCAGTAACCAACTGAGAGCCACTCAGAACTGAGAA-------TCTCCTAAATTTAGAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183057329 120 - 183735486 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGCTCTAGGACAGGAATGAA-AAACCACGGATTCTGGTGCAGTAACCAACTGAGAGCCACTCAGAACTGAGAA-------TCTCCTAAATTTAGAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      146475 120 +    698298 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGCTCTAGGACAGGAATGAA-AAACCACGGATTCTGGTGCAGTAACCAACTGAGAGCCACTCAGAACTGAGAA-------TCACCTAAATTTAGAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573648 121 - 121039945 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGCTCTAGGACAGGAATGAAGAAACCATGGATTCTGGTGCAGTAACCAACTGAGAGCCACTCAGAACTGAATA-------TCACCTAAATTTAGAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179530865 120 - 180051392 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGCTCTAGGACAGGAATGAA-AAACCATGGATTCTGGTGAGGTAACCAACTGAGAGCCACTCAGAACTGAGTA-------TCACCTAAATTTAGAA
i rheMac8.chr6             C 0 I 7
s macFas5.chr6             181264017 120 - 181584905 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGCTCTAGGACAGGAATGAA-AAACCATGGATTCTGGTGAGGTAACCAACTGAGAGCCACTCAGAACTGAGTA-------TCACCTAAATTTAGAA
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      270294 120 -   1764207 cTCTTAATGAAAATCTTCCAGCTTCTGGGGCTTGCTCTAGGACAGGAATGAA-AAACCATGGATTCTGGTGAGGTAACCAACTGAGAGCCACTCAGAACTGAGTA-------TCACCTAAATTTAGAA
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      275088 120 -  16742782 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGGTCTAGGACAGGAATGAA-AAACCATGGATTCTGGTGAGGTAACCAACTGAGGGCCACTCAGAACTGAATA-------TCACCTAAATTTAGAA
i cerAty1.NW_012009470v1   C 0 I 7
s chlSab2.chr4              90578900 120 -  91010382 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGGTCTAGGACAGGAATGAA-AAACCATGGATTCTGGTGAGGTAACCAACTGAGGGCCACTCAGAACTGAATA-------TCACCTAAATTTAGAA
i chlSab2.chr4             C 0 I 4
s manLeu1.NW_012110441v1      173443 120 -    438239 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGGTCTAGGACAGGAATGAA-AAACCATGGATTCTGGTGAGGTAACCAACTGAGGGCCACTCAGAACTGAATA-------TCACCTAAATTTAGAA
i manLeu1.NW_012110441v1   C 0 I 4
s colAng1.NW_012118799v1      201832 120 -    514179 cTCTTGATGAAAATCTTCCAGCTTCTGGGGCTTGCTCTAGAACAGGAATGAA-AAACCATGGATTCTGGTGAGGTAACCAACTGAGGGCCACTCAGAACTGAATA-------TCACCTAAATTTAGAA
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203858108  74 + 204313951 cTCTTGATGCAAATCTTCATGCTTCTGG-----------------------------------------------AACCAACTAAGGGCTACTCAGAGCTGAATA-------TCACCTAAATTGAGAG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      102188  74 +    298490 cTCTTGATGAAAACCTTCGTGCTTCTGG-----------------------------------------------AACCAACTGAGGGCCACTCGGAGCTGAACA-------TCACCTAAATTTAGAG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25430367  74 -  25620257 cTCTTGATGAAAATCTTCGTGATTCTGG-----------------------------------------------AACCAACTAAGGGCCACTCAAAGCTGAATA-------TCACCTAAATTTAGAT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1884930 124 -   2165740 CTCTTGATGATGA-CTCAAAGATGCTGGGCCTTGCACTGGGACAGGTGCAAA-TGACCTTTTATTCT-GTGAGGCAACC-ACTAAGGGCCACTCAGAACTGAGTACTAGGCCTCATCTGAATTTAGAG
i otoGar3.GL873745         I 174 I 3
s canFam3.chr34             11725424 114 +  42124431 -TCATGATGAAGACTTGAAGATGTCTGCACTTGACTCCAGACCAGGAG-----CAGTCGTGGATGGTGCTGAGGC-ACCAGCTGCAGACCACCCAGTACTGAATA-------GCACCTGCTTTTAGAG
i canFam3.chr34            C 0 C 0
e saiBol1.JH378155          16018506   0 +  16417988 C

a score=-26534.000000
s hg38.chr5_KI270793v1_alt     77054 4 +    126136 ---GTTG
s panTro5.chr5             181340412 4 - 181907262 ---Gttt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183057449 4 - 183735486 ---GTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      146595 4 +    698298 ---GTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573769 4 - 121039945 ---GTTT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181264138 4 - 181584905 ---ATCA
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      270415 4 -   1764207 ---ATCA
i macNem1.NW_012012389v1   I 1 C 0
s chlSab2.chr4              90579024 4 -  91010382 ---ATCT
i chlSab2.chr4             I 4 C 0
s manLeu1.NW_012110441v1      173567 4 -    438239 ---ATCT
i manLeu1.NW_012110441v1   I 4 C 0
s colAng1.NW_012118799v1      201953 3 -    514179 ---ATG-
i colAng1.NW_012118799v1   I 1 I 1
s calJac3.chr2             203858182 2 + 204313951 ---GT--
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      102262 2 +    298490 ---GG--
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25430441 2 -  25620257 ---GG--
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1885057 1 -   2165740 ---A---
i otoGar3.GL873745         I 3 C 0
s canFam3.chr34             11725538 4 +  42124431 CTGA---
i canFam3.chr34            C 0 C 0
e saiBol1.JH378155          16018506 0 +  16417988 C
e cerAty1.NW_012009470v1      275208 7 -  16742782 I
e rheMac8.chr6             179530985 7 - 180051392 I

a score=10920.000000
s hg38.chr5_KI270793v1_alt     77058 1 +    126136 T
s panTro5.chr5             181340416 1 - 181907262 t
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183057453 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      146599 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573773 1 - 121039945 T
i nomLeu3.chr6             C 0 I 7
s macFas5.chr6             181264142 1 - 181584905 T
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      270419 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      275215 1 -  16742782 T
i cerAty1.NW_012009470v1   I 7 C 0
s chlSab2.chr4              90579028 1 -  91010382 T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      173571 1 -    438239 T
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      201957 1 -    514179 T
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203858184 1 + 204313951 T
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      102264 1 +    298490 T
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25430443 1 -  25620257 T
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1885058 1 -   2165740 T
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11725542 1 +  42124431 T
i canFam3.chr34            C 0 C 0
e saiBol1.JH378155          16018506 0 +  16417988 C
e rheMac8.chr6             179530985 7 - 180051392 I

a score=3015950.000000
s hg38.chr5_KI270793v1_alt     77059 333 +    126136 TTTTTTTTTTTT-AACAAGAGGTGCTATAAAACTTTCCATGCATCCACTTTttatttaacagctttactgaggtataa-ttgacatacagtaaactacataaagtgtcaatttgatg-g--tttgacatgtgtccacactggtgaaaccaccaccataaacaagataaagaacaatctccatc-catccaaagatt-tct--------------------ccttcgtctttgcaacacctctctcctcccaacccccgggcagccactgatctgctttctgtcgctattgactagttggcattttctataaatttcatagaaatgtaataatacactaactacctttctttggtttgcct
s panTro5.chr5             181340417 334 - 181907262 tttttttttttttAACAAGAGGTGCTATAAAACTTTCCATGCATCCACTTTTTACTTAAcagctttactgaggtataa-ttgacatacagtaaactacataaagtgtcaatttgatg-g--tttgacatgtgtccacactggtgaaaccaccaccataaacaagataaagaacaatctccatt-catccaaagatt-tct--------------------ccttcgcctttgcaacacctctgtcctcccaacccccgggcagccactgatctgctttctgtcgctattgactagttggcattttctataactttcatagaaatgtaataatacactaactacctttctttggtttgcct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183057454 331 - 183735486 TTTTTTTTTT---AACAAGAGGTGCTATAAAACTTTCCATGCATCCACTTTTTACTTAAcagctttactgaggtataa-ttgacatacagtaaactacataaagtgtcaatttgatg-g--tttgacatgtgtccacacatgtgaaaccaccaccataaacaagataaagaacaatctccatt-catccaaagatt-tct--------------------ccttcgcctttgcaacacctctgtcctcccaacccccgggcagccactgatctgctttctgtcgctattgactagttggcattttctataactttcatagaaatgtaataatacactaactacctttctttggtttgcct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      146600 330 +    698298 TTTTTTTTT----AACAAGAGCTGCTATAAAACTTTCCATGCATCCACTTTTTATTTAGcagctttactgaggtataa-ttgacatacagtaaactacataaagtgtcaatttgatg-g--tttgacatgtgtccacgctggtgaaatcaccaccataaacaagataaagaacaatctccatc-catccaaagact-tct--------------------ccttcccctttgcaacacctctctcctcccaacccccgggcagccactgatctgctttctgtcgctattgactagttggcattttctataaatttcatagaaatgtaataatacactaactacctttctttggtttgcct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120573781 331 - 121039945 TTTTTTTTTT---AACAAGAGCTACTATAAAACTTTCCATGCATCCACTTTttatttaacagctttactgaggtataa-ttgacatacagtaaactacataaagtgtcaatttgatg-g--tttgccatgtgtccacactggtgaaacagccaccataaacaagataaagaacaatctccatc-catccaaagatt-tct--------------------ccttcgcctttgcaacacctctctcctcccaacccccgggcagccactgatctgctatctgttgctattgactagctggcattttctataactttcatagaaatgtaataatacactaactatctttctttggtttgcct
i nomLeu3.chr6             I 7 C 0
s rheMac8.chr6             179530992 333 - 180051392 TTTTTTTTTTTT-AACAAGATCTACTATAAAACTTTCCATGCATACACTTTttgtttaacagctttactaaggtataa-ttgacatacaataaactatataaagtgtcaatttgatg-g--tttgacatgtgcccacactggtaaaaccaccaccataaacaagataaagaacaatttccatc-catccagagatg-tct--------------------cgttcgcctttgcaacacctgtctcctcccaagctctgggcagccactgatctgctttctgtcactattgactaattggcattttctataactttcatagaaatgtaataatacactaactacctctctttggtttgcct
i rheMac8.chr6             I 7 C 0
s macFas5.chr6             181264144 333 - 181584905 TTTTTTTTTTTT-AACAAGATCTACTATAAAACTTTCCATGCATACACTTTttgtttaacagctttactaaggtataa-ttgacatacaataaactatataaagtgtcaatttgatg-g--tttgacatgtgcccacactggtaaaaccaccaccataaacaagataaagaacaatttccatc-catccagagatg-tct--------------------cgttcgcctttgcaacacctgtctcctcccaagctctgggcagccactgatctgctttctgtcactattgactaattggcattttctataactttcatagaaatgtaataatacactaactacctctctttggtttgcct
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      270421 330 -   1764207 -TTTTTTTTTTT-AACAAGATCTACTATAAAACTTTCCATGCATGCACTTTttgtttaacagcttcattaaggtataa-ttgacatacaataaactatataaagtgtcaatttgatg-g--tttgacatgtgcccacactggtaaaaccaccaccataaacaagataaagaacaatttccatc-catccagagatg-tct--------------------cgttcgcctttgcaacacctgtctcctcccaacctccaggcagccactgatctgctttctgtcactattgactaattggcattttctataactttcatagaaatgtaataatacactaactac--ctctttggtttgcct
i macNem1.NW_012012389v1   I 1 C 0
s cerAty1.NW_012009470v1      275216 332 -  16742782 TTTTTTTTTTTT-AACAAGATCTACTATAAAACTTTCCATGCATCCACTTGttgtttaacagctttactaaggtataa-ttgacatacaataaactatataaagtgtcagtttgata-g--tttgacatgtgcccacactggtaaaaccaccaccataaacaagataaagaacaatttccatc-catccaaagatg-tct--------------------ccttcgcctttgcaacacctgtctcctcccaacctccgggcagccactgatctgctttctgtcactattgactgattggcattttctataactttcatagaaatgtaataata-actaactacctctctttggtttgcct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90579029 329 -  91010382 TTTTTTTTTTTT-AACAAGATCTACTATAAAACTTTCCATGCATCCAC---ttgtttaacagctttactaaggtataa-ttgacatacaataaactatataaagtgtcaatgtgatg-g--tttgacatgtgcccacactggtaaaaccaccaccataaacaagataaagaacaatttccatc-catccaaagatg-cct--------------------ccttcgcctttgcaacacctgcctcctcccaacctccgggcagccactgatctgctctccgtcactattgactacttggcattttctataactttcatagaaatgtaataata-actaactacctctctttggtttgcct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      173572 332 -    438239 TTTTTTTTTTTT-AACAAGATCTACTATAAAACTTTCCATGCATCCACTTGttgtttaacagctttactaaggtataa-ttgacatacaataaactatataaagtgtcaatttgata-g--tttgacatgtgcccacactggtaaaaccaccaccataaacaagataaagaacaatttccatc-catccaaagatg-tct--------------------ccttcgcctttgcaacacctgtctcctcccaacctccgggcagccactgatctgctttctgtcactattgactgattggcattttctataactttcatagaaatgtaataata-actaactacctctctttggtttgcct
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      201958 330 -    514179 CTTTTTTTTTTT-AACAAGGT---CTATAAAACTTTCCATGCATCCACTTTttgtttaacagctttactaaggtataa-ttgacatacaataaactacataaagtgtcaatttgatg-g--tttgacatgtgcccacactggtaaaatcaccaccataaacaagataaagaacaatttccatc-catccaaagata-tct--------------------ccttcacctttgcaacatctctctcctcccaacctccgggcagccactgatctgctttctgtcactattgattaattggcattttctataactttcatagagatgtaataatacactaactacctttctttagtttgcct
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203858185 325 + 204313951 TTTTTTTAATTT-TACAGGAACTACTATAAAACTTTCCATGCATCCACTTCATAtttaacaggtttactgaggtataa-ttgacatacaataaactgcatggagtgtcaatttgatg-g--tttcacgtgtgtccacactggtgaaaccacc----taaactagataaacgac-atttccatg-cacccgaagacattct--------------------ccttccccttcaca--acctccctcctcccaacctcc-ggacgtcactgatccgctttctgtcactactga-tgagtggcattttctatcactttcacagaaatttaataagacactgactccctttctttggttcacct
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      102265 330 +    298490 TTTTTAAAATTT-TACAGGAACTACTATAAAACTTTCCATGCATCCACTTCTCAtttaacaggtttactgaggcataa-ttgacatacaataaactgcataaagtgtcagtttgat--g--tttgacgtgtgtccacaccggtgaaaccaccaccataaactagataaagaac-atttccatc-cacctgaagaca-tct--------------------ccttcccgtccacaacacctccctcctcccaacctccgggacgtcagcgatctgctttctgtcatggttga-cgactggcagtttctataactttcatagaaatttaataatacactaactccctttctttggtttgcct
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25430444 325 -  25620257 TTTT--AAGTTT-TACAGGAACTACTATAAAACTTTCTCTGCATCCACGTCttatttaacaggtttactgaggtataa-ttgacatacaataaacagcacaaagtgtcagtttgatg-g--tttcacgtgtttccacatgggtgaaaccaccaccatgaactagatgaagagc-atttccatc-cacccgaagaca-tct--------------------ccttccccttcgc---cgctccctcctcccaacctccgggacgtcaccgacctgctttctgtcaccgttga-tgagtggcattttctataactttcgtagaaa-ttgatcagacactgactccctttctttggtttgcct
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1885059 315 -   2165740 -------TGTTT-TATAAGAACTAATATAAAACGTCTCACTCATCCACTTTttatttaacagctttactgaggtgcaa-ttgacatacaataaactgcataaagtgtcgatttgatg-agctttgacatgtgtctgcactggtgaaaccagcaccataaacaagataaggaac--tttccattgcacccagagatg-cct--------------------cctgcccctctgcaa-accacccttctcccaaggtccacgcaaccactgatctgctttctgccaca-----------ggcattttctataacttttatagaaatgtagtaagacagtaattacctttattgggcctgtct
i otoGar3.GL873745         C 0 I 342
s canFam3.chr34             11725543 328 +  42124431 --------TTTT-TACAAGAACTAATGTAGAATTTCTCACCCATCCACTTTTTATTTAGcagctttattgaggtacaacttgatgcctaa---------------gtctgcttgatgca--ctggacatgtgtctacactcgtgaaaccaccaccacaaacaagataaggaac-atctccgtc-acctcaaaggtt-cctcatgccccccatgacccatccctcccgccctgccctgtccacctccctacaggctcccagcagcctcagacctgct-tctattaccacagatttggaggcattttctacaacttttatagaaatgtaataatacagtatttac-tttttttggtctggt-
i canFam3.chr34            C 0 C 0
e saiBol1.JH378155          16018506   0 +  16417988 C

a score=333478.000000
s hg38.chr5_KI270793v1_alt     77392 35 +    126136 tatttcactcagaa-aacaattttgacatttatcta
s panTro5.chr5             181340751 35 - 181907262 tatttcactcagaa-aacaattttgacatttatcta
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183057785 35 - 183735486 tatttcactcagaa-aacaattttgacatttatcta
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      146930 35 +    698298 tatttcactcagaa-aacaattttgacatttatcta
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120574112 35 - 121039945 tatttcactcagaa-aacaattttgacatttatcta
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179531325 35 - 180051392 tatttcactcagaa-aacaattttgacatttatctg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181264477 35 - 181584905 tatttcactcagaa-aacaattttgacatttatctg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      270751 35 -   1764207 tatttcactcagaa-aacaattttgacatttatctg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      275548 35 -  16742782 tatttcactcagaa-aacaattttgacatttatctg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90579358 35 -  91010382 tatttcactcagaa-aacaattttgacatttatctg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      173904 35 -    438239 tatttcactcagaa-aacaattttgacatttatctg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      202288 35 -    514179 tatttcactcagaa-agcaattttgacatttatctg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203858510 35 + 204313951 tgtttcactcagaa-aacagttctgacgtttatctg
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      102595 35 +    298490 tgtttcactcagaa-aacaattctgacgtttatcta
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25430769 35 -  25620257 tgtttcactcagaa-aacaattctgacgtttatcta
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11725871 36 +  42124431 tatttcattccaagtagttatgttgagattcacctg
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1885374 342 -   2165740 I
e saiBol1.JH378155          16018506  0 +  16417988 C

a score=2015958.000000
s hg38.chr5_KI270793v1_alt     77427 236 +    126136 tggttttac---------atgtatcaatatttcattcctttttagatctcagctgtctac-cattgtatggatgtaccaca-------atctatttatccccagacctgttgaggcaca-ttgagttgtttccaactttgatactaatttaacacctccagatttatttgataaggattagcatggtgta-tttttgcccagtcttctatttattgcttatc--------------------------------tgtgc-------------------------------------ctttg----------tatttaacgtgtgtttcttaaag
s panTro5.chr5             181340786 236 - 181907262 tggttttac---------atgtatcaatatttcattcctttttagagctcagctgtctac-cattgtatggatgtaccaca-------atctatttatccccagacctggtgaggcaca-atgagttgtttccaactttgatactaatttaacacctccagatttatttgattaggattagcatggtgta-tttttgcccaatcttctatttattgcttatt--------------------------------tgtgc-------------------------------------ctttg----------tatttaaagtgggtttcttaaag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183057820 236 - 183735486 tggttttac---------atgtatcaatatttcattcctttttagagctcagctgtctac-cattgtatggatgtaccaca-------atctatttatccccagacctggtgaggcaca-atgagttgtttccaactttgatactaatttaacacctccagatttatttgattaggattagcatggtgta-tttttgcccaatcttctatttattgcttatt--------------------------------tgtgc-------------------------------------ctttg----------tatttaaagtgggtttcttaaag
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      146965 235 +    698298 tggttttac---------atgtatcaatatttcattcctttttagagctcagctgtctac-cattgtatggatgtaccaca-------atctatttatccccagacctggtgaggcaca-atgagttgttt-caactttgatactaatttaacacctccagatttatttgattaggagtagcatggtgta-tttttgcccagtcttctgtttattgcttatt--------------------------------tgtgc-------------------------------------ctttg----------tatttaaagtgtgtttcttaaag
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120574147 236 - 121039945 tggttttac---------atgtatcaatatttcattcctttttagagctcagctgtctac-cattgtatggacgtaccaca-------atctatttatccccagacctggtgaggcaca-ctgagttgtttccaactttgatactaatttaacacctccagatttatttgattaggattagcatggtgta-tttttgcccagtcttctatttattgcttatt--------------------------------tgtgc-------------------------------------ctttg----------tatttaaagtgtgtttcttaaag
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179531360 230 - 180051392 tggttttac---------atgtatcagtatttcattcctttttagagctcagctgtgtgc-cattg------tataccaca-------atctacttatccccagacctggtgaggcaca-ttgagttgtttccaactttgatactaatttaacacctccaggtttctttgattaggattagcatggtgtg-tttttgcccagtcttctatttattgcttatt--------------------------------tgtgc-------------------------------------cttta----------tatttaaagtgtgtttcttgaaa
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181264512 230 - 181584905 tggttttac---------atgtatcagtatttcattcctttttagagctcagctgtgtac-cattg------tataccaca-------atctacttatccccagacctggtgaggtaca-ttgagttgtttccaactttgatactaatttaacacctccaggtttctttgattaggattagcatggtgtg-tttttgcccagtcttctatttattgcttatt--------------------------------tgtgc-------------------------------------cttta----------tatttaaagtgtgtttcttgaaa
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      270786 230 -   1764207 tggttttac---------atgtatcagtatttcattcctttttagagctcagctgtgtac-cattg------tataccaca-------atctacttatccccagacctggtgaggcaca-ttgagttgtttccaactttgatactaatttaacacctccaggtttctttgattaggattagcatggtgtg-tttttgcccagtcttctatttattgcttatt--------------------------------tgtgc-------------------------------------cttta----------tatttaaagtgtgtttcttgaaa
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      275583 236 -  16742782 tggttttac---------ctgtatcagtatttcattcctttttagagctcagctgtgtac-cattgtatggatataccaca-------atctacttatccccagacctggtgaggcaca-ttgagttgtttccaactttgatactaatttaacacctccaggtttctttgattaggattagcatggtgta-tttttgcccagtcttctatttattgcttatt--------------------------------tgtgc-------------------------------------cttta----------tatttaaagtgtgtttcttgaag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90579393 236 -  91010382 tggttttac---------atgtatcagtatttcattccttattagagctcagctgtgtac-cattgtatggatataccaca-------atctacttatccccagacctggtgaggcaca-ttgagctgtttccaactttgatactaatttaacacctccaggtttctttgattaggagtagcatggtgtg-tttttgcccagtcttctatttattgcttatt--------------------------------tgtgc-------------------------------------cttta----------tatttaaagtgtgtttcttgaag
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      173939 236 -    438239 tggttttac---------ctgtatcagtatttcattcctttttagagctcagctgtgtac-cattgtatggatataccaca-------atctacttatccccagacctggtgaggcaca-ttgagttgtttccaactttgatactaatttaacacctccaggtttctttgattaggattagcatggtgtg-tttttgcccagtcttctatttattgcttatt--------------------------------tgtgc-------------------------------------cttta----------tatttaaagtgtgtttcttgaag
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      202323 236 -    514179 tggttttac---------atgtatcagtatttcattcctttttagagctcaactgtgtac-cattgtatggatataccaca-------atctacttatccccagacctggtgaggcaca-ttgagttgtttccaactttgatactaatttaacacctccaggtttctttgattagaattagcatggtgta-tttttgcccagtcttctatttattgcttatt--------------------------------tgtgc-------------------------------------cttta----------tatttaaagtgtgtttcttgaag
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203858545 238 + 204313951 tggtctcactgttatgatatgtatcaatatttcattccttttctgagctcagtcatgcac-cattgaatggatataccaca-------atctgtgtatccccagacctgctgggacaca-ctcagcggtttccaacttGGGGattaatgtaacacctccagatgtctttgattaggattagcatggtgta-ttttttcccagtcttctctttattgcttatt--------------------------------tgtgc-------------------------------------cttta----------tatttaaagtgtg-------aag
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      102630 228 +    298490 tggtttcac---------atgtaacaatatttcattcctttccagagctcagtcatgcac-cattgaatggatataccaca-------gtctctgtatccccagacctgctgaggcaca-ctcaggggtgtccaactttgatattaatttaacacctccaggcgtctttgattaggattagcatggggca-ttttttccca-tcttctgttcatggcttatt--------------------------------tgtgc-------------------------------------cttta----------tatttaaagtgtg-------agg
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25430804 223 -  25620257 tggtttcac---------acgtatcaatacctcattccctttcagagctcagtcacgcac-cgttgaatggatataccacc-------gtctatgtatcccccgccctgctgaggcaca-ctcagtggtttccaactttgatgttaacttaacacctccagatgtctttgattaggactagcgtggtctg-ttttttcccggtcttctgtttattgcttatt--------------------------------tgtgc-------------------------------------c----------------tttaaagtgtg-------aag
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1885716 307 -   2165740 tgagcctcc---------atgtatcaatatttcattcctttctagagctcagttatatac-tatcatataga--taatatc-------atctgtttctccccagagctgttgatgcacatttgagttgtttcccactttGA--------TtactctctctaatttcattgattaggattagcatggtacatttttttcttagtcttttatctataatttattgggatttttacattgagtggACATTAGGTTTATGTGCAATTGACTACGTTAAACTATTTTAAATTGCACACAAACTTTATTTCCACCtgtatttaaagcatatttgttgtcg
i otoGar3.GL873745         I 342 C 0
s canFam3.chr34             11725907 201 +  42124431 -----------------------------------tgctTCT----GTGCAGCTGGGTACGCTCCACAGGGACTGACCACAGAGCCGTACCCACTAACATCCAG-----------CACA-tctgagctcttcctactttgatatt-atttagtcctgccagcttcatttggtgacagtcagcatcctgga-acctt-tccagtctttaagtttcagcatatt--------------------------------tatgt-------------------------------------cttta----------tatttaaagagggtttcctgggg
i canFam3.chr34            C 0 I 261
e saiBol1.JH378155          16018506   0 +  16417988 C

a score=1044693.000000
s hg38.chr5_KI270793v1_alt     77663 111 +    126136 ggggcacacagttaggttttggt----ttgtttttttcaatctgacaa-ctttgctttttaattgggatatttagatcatttatatttaatatgattgatgataaggctaagttta
s panTro5.chr5             181341022 111 - 181907262 ggggcacacagttaggttttggt----ttgtttttttcaatctgacaa-ctttgctttttaattgggatatttagatcatttatatttaatatgattgatgataaggctaagttta
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183058056 108 - 183735486 ggggcacacagttaggttttggt-------tttttttcaatctgacaa-ctttgctttttaattgggatatttagatcatttatatttaatatgattgatgataaggctaagttta
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      147200 111 +    698298 ggggcacacagttaggttttggt----ttgcttttttcaatctgacaa-ctttgctttttaattgggatatttagatcatttatatttaatatgattgatgataaggctaagttta
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120574383 111 - 121039945 ggggcacacagttaggttttggt----ttgtttttttcagtctgacaa-ctttgctttttaattgggatatttagatcatttatatttaatatgattggtgataaggctaagttta
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179531590 115 - 180051392 gcggcacacaattaggttttggttcatttgttttattcaatctgacaa-ctttgctttttaattgggatatttagatcatttatatttaatgtgattggtgataaggttaagttta
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181264742 115 - 181584905 gcggcacacaattaggttttggttcatttgttttattcaatctgacaa-ctttgctttttaattgggatatttagatcatttatatttaatgtgattggtgataaggttaagttta
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      271016 115 -   1764207 gcggcacacaattaggttttggttcatttgttttattaaatctgacaa-ctttgctttttaattgggatatttagatcatttatatttaatgtgattggtgataaggttaagttta
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      275819 115 -  16742782 gcggcacacaattaggttttggtttatttgttttattcaatctgacaa-ctttgctttttaattgggatatttagatcatttacatttaatgtgattggtgataaggctaagttta
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90579629 115 -  91010382 ggggcacacaattaggttttggttcatttgtttttttcaatctgacag-ctttgctttttaattgggatatttagatcatttacatttaatgtgattggtgataaggctaagttta
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      174175 115 -    438239 gcggcacacagttaggttttggttcatttgttttattcaatctgacaa-ctttgctttttaattgggatatttagatcatttatatttaatgtgattggtgataaggttaagtata
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      202559 115 -    514179 ggggcacacaattaggttttggttcatttgtttttttcaatctgacaa-ctttgctttttaattgggatatttagatcatttacatttaatgtgattggtgataaggctaagttta
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203858783 115 + 204313951 ggggcacacagttaggtcttggtttgttgttttttttcaatctgacaa-ctttgctttttaattgggatatttagatcatttatatataatgtgattggtgataatgctaagttta
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      102858 111 +    298490 gggacacac----aggtcttggtttgttggttttttccaatctgacaa-ctttgctttttaattgggatatttagatcacttatatataatgtgattggtgataaggctaagttta
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25431027 115 -  25620257 ggggcacacagttaggtcttggtttcttggtttttttcaatctgacaa-ctttgctttttaattgggatatttagatcatttagatataatgtgattggtgataaggctaagttta
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1886023 100 -   2165740 --ggcacagagttgggtcttggc-------ttttccacagtctgacaacctttgctttttaattgggatatttagaccatttatatttaat-------gtgatatggctcaattta
i otoGar3.GL873745         C 0 I 19
e saiBol1.JH378155          16018506   0 +  16417988 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=52459.000000
s hg38.chr5_KI270793v1_alt     77774 6 +    126136 aatata
s panTro5.chr5             181341133 6 - 181907262 aatgta
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183058164 6 - 183735486 aatgta
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      147311 6 +    698298 aatata
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120574494 6 - 121039945 aatata
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179531705 6 - 180051392 aatata
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181264857 6 - 181584905 aatata
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      271131 6 -   1764207 aatata
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      275934 6 -  16742782 aatata
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90579744 6 -  91010382 aatata
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      174290 6 -    438239 aatata
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      202674 6 -    514179 aataca
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203858898 6 + 204313951 aatata
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      102969 6 +    298490 aatata
i cebCap1.NW_016108158v1   C 0 I 73
s aotNan1.NW_018503740v1    25431142 6 -  25620257 aatata
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1886123 19 -   2165740 I
e saiBol1.JH378155          16018506 0 +  16417988 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=1814293.000000
s hg38.chr5_KI270793v1_alt     77780 246 +    126136 ccatttttcaggccaggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcagatcacttgaggccaggggttcaagaccagcctggccaaacatggtgaaaccctgtctctactcaaaatacaaaaattagccaggcgtggtggcacacgcctgtaatctcagctactgagga-ggctg-aggcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gagccaaga
s panTro5.chr5             181341139 246 - 181907262 tcatttttcaggccaggcatggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcagatcacttgaggtcaggggttcaagaccagcttggccaaacatggtgaaatcctgtctctactcaaaatacaaaaattagctaggcgtggtggcacacgcctgtaatctcagctaccgagga-ggctg-aggcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gagccaaga
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183058170 246 - 183735486 tcatttttcaggccaggcatggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcagatcacttgaggtcaggggttcaagaccagcctggccaaacatggtgaaaccctgtctctactcaaaatacaaaaattagctaggcgtggtggcacacgcctgtaatctcagctaccgagga-ggctg-aggcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gagccaaga
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      147317 245 +    698298 ccatttttcaggccaggcacggtggctcatgcctgtaatcccagcacttt-ggaggctgaggtgggcagatcacttgaggtcaggggttcaagaccagcctggccaaacatggtgaaaccctgtctctactcaaaatacaaaaattagccaggcgtagtggcacacgcctgtaatctcagctactgagga-ggctg-aggcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gagccaaga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120574500 246 - 121039945 ccatttttcaagccaggcacggtggctcatgcctgtaatcccagcactttgggaggccgaggtgggcagattacttgaggtcaggggttcaagaccagcctggccaaacatggtgaaaccctgtctctactcaaaatacaaaaattagccaggcgtggtggcacatgcctgtaatctcagctactgagga-ggctg-aggcaggagaatcacttgaacctggaaggtagagg-ttgcggt-gagccaaga
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179531711 245 - 180051392 ccatttttcaggccaggtgcggtggctcatgcctataatcccagaattttgggaggtggagatgggcagatcacttgaggtcaggagttcaagaccagcct-gccaaacatggtgaaaccctgtctctactcaaaatacaaaaattagctaggtgtggtggcatacgcctgtaatcttagctactgagga-ggctg-aggcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gtgccaaga
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181264863 245 - 181584905 ccatttttcaggccaggtgcggtggctcatgcctataatcccagaattttgggaggtggagacgggcagatcacttgaggtcaggagttcaagaccagcct-gccaaacatggtgaaaccctgtctctactcaaaatacaaaaattagctaggtgtggtggcatacgcctgtaatcttagctactgagga-ggcta-aggcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gtgccaaga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      271137 245 -   1764207 ccatttttcaggccaggtgcggtggctcatgcctataatcccagaattttgggaggtggagacgggcagatcacttgaggtcaggagttcaagaccagcct-gccaaacatggtgaaaccctgtctctactcaaaatacaaaaattagctaggtgtggtggcatacgcctgtaatcttagctactgagga-ggctg-aggcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gtgccaaga
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      275940 245 -  16742782 ccatttttcaggccaggtgcggtggctcatgcctataatcccagaattttgggaggtggagacgggcagatcacttgaggtcaggagttcaagaccagcct-gccaaacatggtgaaaccctgtctctactcaaaatacaaaaattagctaggtgtggtggcatacgcctgtaatcttagctactgagga-ggctg-aggcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gtgccaaga
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90579750 245 -  91010382 ccatttttcaggccaggtgcggtggctcatgcctataatcccagaactttgggaggcggagacgggcagatcacttgaggtcaggagttcaacaccagcct-gccaaacatagtgaaaccctgtctctactaaaaatacaaaaattagctaggtgtggtggcacacgcctgtaatcttagctactgagga-ggctg-agtcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gtgccaaga
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      174296 245 -    438239 ccatttttcaggccaggtgcggtggctcatgcctataatcccagaattttgggaggtggagacgggcagatcacttgaggtcaggagttcaagaccagcct-gccaaacatggtgaaaccctgtctctactcaaaatacaaaaattagctaggtgtggtggcacacacctgtaatcttagctactgagga-ggctg-aggcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gtgccaaga
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      202680 245 -    514179 ccatttttcagtccaggcacggtggctcatgcctgtaatcccagaactttgggaggcggagacaggcagatcacttgaggtcaggagttcaagaccagcct-gccaaatatggtgaaaccctgtctctactcaaaatacaaaaattagctgggtgtggtggcacacgcctgtaatcttagctactgagga-ggctg-aggcaggagaatcacttgaacctgggaggtagagg-ttgcagt-gtgccaaga
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203858904 243 + 204313951 ccatttttcaggcctggtgcagtggctcatgcctgtaatcccagcactttgggaggccaaggtgggcagatcactcgatgtcaggcgtttcagaacagcctggcca---gtggtgaaactccgtctgtactcaaagcacaaacattagccaggcatggtaacacatgcctataatctcagccactcagga-ggctg-aggtgggaaaatcacttgaacccaggaggcagagg-ttgcagt-gagcgaaga
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25431148 248 -  25620257 ccgtttttcaggccgggcgcagtggctcatgcctgtaatcccagcactttgggaggccaaggtgggcggatcacttgatgtcgggagtttcagaacagcctggccaaacatggtgaaactctgtctgtactgaaaacacaaaaattagccaggcatggtggcacacgcctataatctcagctactcaggagggctgcaggcgggaaaatc-cttgaaccca-gaagcagaggcttgcagtggagccaaga
i aotNan1.NW_018503740v1   C 0 I 83
e otoGar3.GL873745           1886123  19 -   2165740 I
e cebCap1.NW_016108158v1      102975  73 +    298490 I
e saiBol1.JH378155          16018506   0 +  16417988 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=383488.000000
s hg38.chr5_KI270793v1_alt     78026 59 +    126136 ttgcaccattgcactccagcctgggcaacagagtgagactctgtctcaaaaaataaaaa
s panTro5.chr5             181341385 59 - 181907262 ttgcgccattgcactccagcctgggcaacagagtgagactctgtctcaaaaaataaaaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183058416 59 - 183735486 ttgcgccattgcactccagcctgggcaacagagtgagactctgtctcaaaaaataaaaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      147562 59 +    698298 ttgtgccattgcactccagcctgggcaacagagtgagactctgtctcaaaaaataaaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120574746 59 - 121039945 ttgcatcattgcacttcagcctgggcaacagagtgagactctgtctcaaaaaataaaaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179531956 59 - 180051392 tcatgccattgcactccagcctgggcaacagagtgagagtctgtctcaaaaaataaaaa
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181265108 59 - 181584905 tcgtgccattgcactccagcctgggcaacagagtgagagtctgtctcaaaaaataaaaa
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      271382 59 -   1764207 tcgtgccattgcactccagcctgggcaacagagtgagagtctgtctcaaaaaataaaaa
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      276185 59 -  16742782 tcgtgccattgcactccagcctgggcaatggagtgagactctgtctcaaaatataaaaa
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90579995 59 -  91010382 tcgtgccattgcactccaacctgggcaacagagtgagagtctgtctcaaaaaataaaaa
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      174541 59 -    438239 ttgtgccattgcactccagcctgggcaatggagtgagactctgtctcaaaatataaaaa
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      202925 59 -    514179 tcgtgccattgcactccagcctgggcaacagagtgagactctgtctcaaaaaataaaaa
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203859147 59 + 204313951 tcacaccactgctctccaacctgggtgacagagtgagacttcgtctcaaaaaataacaa
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25431396 83 -  25620257 I
e otoGar3.GL873745           1886123 19 -   2165740 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018506  0 +  16417988 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=234597.000000
s hg38.chr5_KI270793v1_alt     78085 32 +    126136 taaatctaccatttttctatttg-tttctattt
s panTro5.chr5             181341444 32 - 181907262 taaatgtaccatttttctatttg-tttctattt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183058475 32 - 183735486 taaatgtaccatttttctatttg-tttctattt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      147621 32 +    698298 taaatgtaccatttttctatttg-tttctattt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120574805 32 - 121039945 taaatgtaccatttttctatttg-tttctattt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179532015 32 - 180051392 taaatgtaccatttttctatttg-tttctattt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181265167 32 - 181584905 taaatgtaccatttttctatttg-tttctattt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      271441 32 -   1764207 taaatgtaccatttttctatttg-tttctattt
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      276244 32 -  16742782 taaatgtaccatttttctatttg-tttctattt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580054 32 -  91010382 taaatgtaccatttttctatttg-tttctattt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      174600 32 -    438239 taaatgtaccatttttctatttg-tttctattt
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      202984 32 -    514179 taaatgtaccatttttctatttg-tttctattt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203859206 27 + 204313951 taaatgtgccatttttccatttg-tttc-----
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1886142 33 -   2165740 taaacatatgttttttctatttgttttctattt
i otoGar3.GL873745         I 19 C 0
e aotNan1.NW_018503740v1    25431396 83 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018506  0 +  16417988 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=3553272.000000
s hg38.chr5_KI270793v1_alt     78117 480 +    126136 --gtcctatctctgttcattctctttctcctttt------tttctgttttcctttgcattatttttctaagattccattttatctcttttgttcagtttttagctattattctttgttg----------tgtt-cagtgatggctttagggcttataatatacatctttggtttatcaccgtctaccttt-attgatattataccagttaac-------aaccttacagcagcat-cttccatatctttcctcccagccttcctgctatttaagccatgcattcttttcacatatgcaaaaaaccgcaATTACTTTTTCACCAACCTAATATAATCCCATAGTACATTGTTAatttgcttccccctgtcttagggatgactgtcctatgttgtccagtgtccagtgtcttcaaaacctttgtttcccgtattgttttctag--tttgtttgtttcaggcaggtggtaaacctga-tccagtgactccatcacagctggaggaggaagtGAA
s panTro5.chr5             181341476 480 - 181907262 --gtcctatctctgttcattctctttctcctttt------tttctgttttcctttgcattatttttctaagattccattttatctcttttgttcagtttttagctattattctttgttg----------tgtt-cagtgatggctttagggcttataatatacatctttggtgtatcactgtctaccttt-attgatattataccagttaac-------aaccttacagcagcat-cttccatatctttcctcccagccttcctgctatttaagccatgcattcttttcacatatgcaaaaaaccacaatTACTTTTTCACCAACCTAATATAATCCCATAGTACATTGTTAatttgcttccccctgtcttagggatgactgtcctatgttgtccagtgtccagtgtcttcaaaatctttgtttcccgtattgttttctag--tttatttgtttcaggcaggtggtaaacctga-tccagtgactccatcacagctggaggaggaagtGAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183058507 480 - 183735486 --gtcctatctctgttcattctctttctcctttt------tttctgttttcctttgcattatttttctaagattccattttatctcttttgttcagtttttagctattattctttgttg----------tgtt-cagtgatggctttagggcttataatatacatctttggtgtatcactgtctaccttt-attgatattataccagttaac-------aaccttacagcagcat-cttccatatctttcctcccagccttcctgctatttaagccatgcattcttttcacatatgcaaaaaactgcaATTACTTTTTCACCAACCTAATATAATCCCATAGTACATTGTTAatttgcttccccctgtcttagggatgactgtcctatgttgtccagtgtccagtgtcttcaaaacctttgtttcccgtattgttttctag--tttatttgtttcaggcaggtggtaaacctga-tccagtgactccatcacagctggaggaggaagtGAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      147653 479 +    698298 --gtcctatctctgttcattctctttctcctttt------tttctgttttcctttgcattatttttctaagattctattttatctcttttgttcagtttttagctattattctttgctg----------tgtt-cagtgatggctttagggcttataatatacatctttggtttatcaccgtctaccttt-attgatattataccagttaac-------aacctgacagcagcat-cttccatatctttcctcccagctttcctgctatttaagccatgcattcttttcacatatgcaaaaaaccgcaATTACTTTTTCACCAACATAATATAATCCTATAGTACATTGTTAatttgcttccccctgtcttagggatgactgtcctatgttgtccagtg-ccagtgtcttcaaaacctttgtttcccgtattgttttctag--tttatttgtttcaggcaggtggtaaacctga-tccagtgactccatcacagctggaggaggaagtGAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120574837 478 - 121039945 --gtcctatctctgttca--ctctttgtcctttt------tttctgttttcctttgcattatttttctaagattccattttatctcttttgttcagtttttagctattattctttgttg----------tgtt-caatgatggctttagggtttataatatacatctttggtttatcaccatctaccttg-attgatattataccagttaaa-------aaccttacagcagcat-cttccgtatctttcctcccagccttcctgctatttcagccatgcattctttccacatatgcaaaaaaccgcaATTACTTTTTCACCAACCTAACATAATCCCATAGCACATTGTTAatttgcttccccctgtcttagggatgactgtcctatgttgtccggtgtctagtgtcttcaaaacctttgtttcctgtattgttttctag--tttatttgtttcaggcaggtggtaaacctga-tccagtgactccgtcacagctggaggaggaagtGAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179532047 481 - 180051392 --gtcctatctgtgttcattctcctcctccttttat----tttctgttttcctttggattatttttctaagattccattttctctcttttgttcagtttttagctattattctttgttg----------tgtt-aaacggttgctttagggtttacaatatacatctttggtttatcaccacctaccttc-attgatactataccagttaaa-------aaccttacagcagcat-cttccatctctttcctcccagtcttcctgctatttcagccatgcattCttcccacatatgcaaaaaaccgcaattacttttgcaccaacctaaTATAATCCCATAGTACATTGTTAatttgcttccccc-gtcttagggatgactgtcctatgttgtctgatgtccagtgtcttgaaaacctttgtttcccgtattgttttctag--ttggtttgtttccggcaggtggtaaacttgc-cccagtgactctgccatagctggaggaggaagtGAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181265199 481 - 181584905 --gtcctatctgtgttcattctcctcctccttttat----tttctgttttcctttggattatttttctaagattccattttctctcttttgttcagtttttagctattattctttgttg----------tgtt-aaacggttgctttagggtttacaatatacatctttggtttatcaccacctaccttc-attgatactataccagttaaa-------aaccttacagcagcat-cttccatctctttcctcccagtcttcctgctatttcagccatgcattCttcccacatatgcaaaaaaccgcaattacttttgcaccaacctaaTATAATCCCGTAGTACATTGTTAatttgcttccccc-gtcttagggatgactgtcctatgttgtctgatgtccagtgtcttgaaaacctttgtttcccgtattgttttctag--ttggtttgtttccggcaggtggtaaacttgc-cccagtgactctgtcatagctggaggaggaagtGAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      271473 481 -   1764207 --gtcctatctgtgttcattctcctcctcctcttat----tttctgttttcctttggattatttttctaagattccattttatctcttttgtttagtttttagctattattctttgttg----------tgtt-aaacggttgctttagggtttacaatatacatctttggtttatcaccacctaccttc-attgatattataccagttaaa-------aaccttacagcagcat-cttccatctctttcctcccagtcttcctgctatttcagccatgcattCttcccacatatgcaaaaaaccgcaattacttttgcaccaacctaaTATAATCCCGTAGTACATTGTTAatttgcttccccc-gtcttagggatgactgtcctatgttgtctgatgtccagtgtcttgaaaacctttgtttcccgtattgttttctag--ttggtttgtttctggcaggtggtaaacttgc-cccagtgactctgtcatagctggaggaggaagtGAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      276276 481 -  16742782 --gtcctatctgtgttcattctccttctcctttttt----tttctgttttcctttggattatttttctaagattctattttatctcttttgttcagcttttagctattattctttgttg----------cgtt-aaacgattgctttagggtttacaatatacatctttggtttatcaccacctaccttc-attgatattataccagttaaa-------aaccttacagcagcat-cttccatctctttcctcccagtcttcctgctatttcagccatgcattCttcccacatacgcaaaaaaccgcaattacttttgcaccaacctaaTATAATCCCATAGTGCATTGTTAatttgcttccccc-gtcttagggatgactgtcctatgttgtctgatgtccagtgtcttgaaaacctttgtttcccgtattgttttctag--ttggtttgtttccggcaggtggtaaacttgc-cccagtgactctgtcatagctggaggaggaagtGAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580086 481 -  91010382 --gtcctatctgtgttcattctctttctcctttttt----tttctgttttcctttggattatttttctaagattcctttttatctcttttgttcagtttttagctattattctttgttg----------tgtt-aaacgattgctttagggtttacaatatacatctttggtttatcaccacctaccttc-attgatattatactagttgaa-------aaccttacagcagcat-cttccatctctttcctcccagccttcctgctattTCAGCCATGTGTTCttcccacatatgcaaaaaaccgcaattacttttgcaccaacctaaTATAATCCCGTAGTACATTGTTAatttgcttccccc-gtcttagggatgactgtcctatgttgtctgatgtccagtgtcttgaaaacctttgtttcccgtattgttttctag--ttggtttgtttccggcaggtggtaaacttgc-cccagtgactctgtcatagctggaggaggaagtGAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      174632 481 -    438239 --gtcctatctgtgttcattctccttctcctttttt----tttctgttttcctttggattatttttctaagattccattttatctcttttgttcagcttttagctattattctttgttg----------tgtt-aaacgattgctttagggtttacaatatacatctttggtttatcaccacctactttc-attgatattataccagttaaa-------aaccttacagcagcat-cttccatctctttcctcccagtcttcctgctatttcagccatgcgttCttcccacatatgcaaaaaaccgcaattacttttgcaccaacctaaTATAATCCCATAGTACATTGTTAatttgcttccccc-gtcttagagatgactgtcctatgttgtctgatgtccagtgtcttgaaaacctttgtttcccgtattgttttctag--ttggtttgtttccggcaggtggtaaacttgc-cccagtgactctgtcatagctggaggaggaagtGAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203016 428 -    514179 --gtcctatctgtgttcattctctttctcctttttttttgtttctgttttcctttggattatttttccaagattccattttatctgttttgttcagtttttagctattattctttgttg----------tgtt-aaatgattgctttagggtttacaatatacatctttggtttatcaccacctaccttc-attgatattatactagttaaa-------aaccctacagcagcgt-cttccatctctttcctcccaggcttcctgctatttcagccatgcgttCttcccatatatgcaaaaaaccgcaattacttttgcaccaacctaaTATAATCCCATAGCACATTGTTAatttgcttccccc-gtcttagggatgactgtcctatgttgtctgatgtccagtgtcttgaaaacctttgtttcctgtattgttttctag--ttggtt----------------------------------------------------------TGAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203859233 478 + 204313951 --accctatctgtgtacattctctttctcctttt------tctctatttccctttgggttgtttttctatga-tccattctagctgttctgttcagtttttggctattattcttcgttg----------tgttaaaatgcctgctgtggggtttgtaatagacatcttggacgtgtcaccgtcttccttc-agcgctactataccagttaaa-------aaccttacagcagcatacttccctaactgtcctcccagccttcatgctacttcagccagacatgttttctacatatgCAGAAAAACACGATTACTTTTGCACCAACCTAACACAGTCCCATCATACGTTGctaatttgcttccccctatcttagggataactgtcctgtgttgtctgatgtccaggatcttgaaaacctttgtttcccgtaccgttttctgg--t----ttgtttcaggcaggtggtaaagctgctcccagtgactctaccacagctggaggaggaaCTGAA
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25431479 482 -  25620257 --gccctatctgtgtaccttctctttctcctttt------tttctatttccctttggattatttttctatgattccattttatctgttttgttcagtttttggctgttattctttgttg----------tgttaaaatgattgctttagggtttataatatacatctttggtgtatcacagtcaaccttc-aatgctacgatagcagttaaa-------acccttgcgacagcacacttccctggctttcctcccagcctgcatgccatttcagccagacattttttctacatatgCAAAACAACACGATTACTTTTGCACCGACGTAACACGATCCCATAGTATGTTGTTAatttgctttcccc-atcttagggataactgtcctgtgttgtctgatggccagtgtcttgaaaacctttgcttcccgtatcgttttctgg--tttacttgtttcagacaggtggtaaacctgctcccggtgactccatcacagccgcaggaggaagtGAA
i aotNan1.NW_018503740v1   I 83 C 0
s otoGar3.GL873745           1886175 444 -   2165740 ttcccccctgtcttttggtcctttttttcctttc-t----ttttcaatttcttttggataatttttctatgatgccattttatc---tttgttgagtttgaggctattattgtttgttgttctttattatgtt-aaatagttactttaggatttacgatatacatctttgttttatcatagtgtccctccaagtaatattagacatgttaaaaacaggtaacttaacaattgcatacttcca------ttctcccagccctcatgctatttctgccatgcatt-tttctgtatatg--------------------------------atataatcccATGGTA----GTtcatttagttcccct-gtcttagggatggctgtcccatgttgtctgatctcccatgt---------ctttgtttcacatattatttttgtggttttatttgtgtcaggcaaaaggtaaatctggtcccagttactccattttagctagaaagggaa-----
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      102975  73 +    298490 I
e saiBol1.JH378155          16018506   0 +  16417988 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=55854.000000
s hg38.chr5_KI270793v1_alt     78597 8 +    126136 CTCACttt
s panTro5.chr5             181341956 8 - 181907262 CTCACttt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183058987 8 - 183735486 CTCACttt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148132 8 +    698298 CTCACttt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120575315 8 - 121039945 CTCACttt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179532528 8 - 180051392 CTCACttt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181265680 8 - 181584905 CTCACttt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      271954 8 -   1764207 CTCACttt
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      276757 8 -  16742782 CTCACttt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580567 8 -  91010382 CTCACttt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175113 8 -    438239 CTCACttt
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203444 8 -    514179 CTCACttt
i colAng1.NW_012118799v1   C 0 C 0
s aotNan1.NW_018503740v1    25431961 8 -  25620257 TCCACTTT
i aotNan1.NW_018503740v1   C 0 I 185
e otoGar3.GL873745           1886619 0 -   2165740 C
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018506 0 +  16417988 C
e calJac3.chr2             203859711 0 + 204313951 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=744443.000000
s hg38.chr5_KI270793v1_alt     78605 145 +    126136 tcttttttttttttt----agatggagtctcgctctgtcacccaggctggagtgcagtggcgtgatcttggctcactgcaagctccacctcctgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcatct
s panTro5.chr5             181341964 149 - 181907262 tctttttttttttttttttagatggagtctcgctctgtcacccaggctggagggcagtggcgtgatcttggctcactgcaagctccgcctcctgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcatct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183058995 145 - 183735486 tcttttttttttttt----agatggagtctcgctctgtcacccaggctggagggcagtggcgtgatcttggctcactgcaagctccgcctcctgggttcatgccattctcctgcctcagcctcccgagtagctgggactacaggcatct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148140 142 +    698298 tcttttttttttt------agatagagtctcgctctgtcacccaggctggagtgcagtggcgtgatcttggctcactgcaagctccgcctcctgggttcatgccattctcctgcctcagcctcccgagtaactgggactacaggc-cct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120575323 144 - 121039945 tctttttttatttt-----agatggagtctcactctgtcacacaggctggagtgcagtggcatgatctcagctcactgcaagctctacctcctgggttcacgccattctcctgcctcagcctcctgagtagctgggactgcaggcacct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179532536 149 - 180051392 tcttttttttattatttttagatggaatctctttctgacgcccaggttggagtgcagtggtaccatctcagctcactgcaagctccacctcctgggttcacaccattctcccgcctcagcctcctgagcagctgggattacaggcgcct
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181265688 149 - 181584905 tcttttttttattatttttagatggaatctctttctgacgcccaggttggagtgcagtggtaccatctcagctcactgcaagctccacctcctgggttcacaccattctcccgcctcagcctcctgagcagctgggattacaggcgcct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      271962 149 -   1764207 tcttttttttattatttttagatggaatcttgttctgacgcccaggttggagtgcagtggtaccatctcagctcactgcaagctccacttcctgggttcacaccattctcccgcctcagcctcctgagcagctgggattacaggcgcct
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      276765 149 -  16742782 tctttttttaattatttttagatggaatctcgttctgacacccaggttggagtgcagtggtaccatctcagctcactgcaagctccacctcctgggttcacaccattcgcccacctcagcctcccgagcagctgggattacaggcgcct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580575 149 -  91010382 tcttttttttattatttttagacggaatctcattctgtcgcccaggttggagtgcagtggtaccatctcagctcactgcaagctccacctccggggttcacaccattctcccgcctcagcctcccaagtagctgggattacaggcgccc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175121 149 -    438239 tctttttttaattatttttagatggaatctcgttctgacacccaggttggagtgcagtggtaccatctcagctcactgcaagctccacctcctgggttcacaccattctcccgcctcagcctcccgagcagctgggattacaggcgcct
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203452 149 -    514179 tctttttttaattatttttagacagaatctcattctgtcgcccaggttggagtgcagtggtacgagctcagctcactacaagctccgtctcctggcttcacaccattctcccgcctcagcctcccgagtagctgggattacaggcgccc
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25431969 185 -  25620257 I
e otoGar3.GL873745           1886619   0 -   2165740 C
e cebCap1.NW_016108158v1      102975  73 +    298490 I
e saiBol1.JH378155          16018506   0 +  16417988 C
e calJac3.chr2             203859711   0 + 204313951 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=72441.000000
s hg38.chr5_KI270793v1_alt     78750 12 +    126136 gccaccacgcct
s panTro5.chr5             181342113 12 - 181907262 gccaccacgcct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059140 12 - 183735486 gccaccacgcct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148282 12 +    698298 gccaccacgcct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120575467 12 - 121039945 gccatcacacct
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179532685 12 - 180051392 gccaccatgccc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181265837 12 - 181584905 gccaccatgccc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272111 12 -   1764207 gccaccatgccc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      276914 12 -  16742782 gccaccatgccc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580724 12 -  91010382 gccaccatgccc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175270 12 -    438239 gccaccatgccc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203601 12 -    514179 gccaccacgccc
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1886619 12 -   2165740 gtcAACACACCT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25431969 185 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018506  0 +  16417988 C
e calJac3.chr2             203859711  0 + 204313951 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=172468.000000
s hg38.chr5_KI270793v1_alt     78762 31 +    126136 ggctaattttttttatttttagtagagatgg
s panTro5.chr5             181342125 31 - 181907262 ggctaattttttttatttttagtagagacgg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059152 30 - 183735486 ggctaa-tttttttatttttagtagagacgg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148294 31 +    698298 ggctaattttttttatttttagtagagacgg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120575479 31 - 121039945 ggctaattttttttatttttagtagagacgg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179532697 31 - 180051392 ggctaattttttgtatttttagtagagacgg
i rheMac8.chr6             C 0 I 22
s macFas5.chr6             181265849 31 - 181584905 ggctaattttttgtatttttagtagagacgg
i macFas5.chr6             C 0 I 4
s macNem1.NW_012012389v1      272123 31 -   1764207 ggctaattttttgtatttttagtagagacgg
i macNem1.NW_012012389v1   C 0 I 22
s cerAty1.NW_012009470v1      276926 31 -  16742782 agctaattttttgtatttttagtagagatgg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580736 31 -  91010382 ggctaattttttgtatttttagtagagacgg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175282 31 -    438239 ggctagttttttgtatttttagtagagatgg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203613 31 -    514179 ggctaattttttgtatttttagtagagacgg
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25431969 185 -  25620257 I
e otoGar3.GL873745           1886631  0 -   2165740 C
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018506  0 +  16417988 C
e calJac3.chr2             203859711  0 + 204313951 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=19109.000000
s hg38.chr5_KI270793v1_alt     78793 6 +    126136 gatttc
s panTro5.chr5             181342156 6 - 181907262 gatttc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059182 6 - 183735486 gatttc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148325 6 +    698298 gatttc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120575510 6 - 121039945 gatttc
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181265884 6 - 181584905 ggtctc
i macFas5.chr6             I 4 I 12
s cerAty1.NW_012009470v1      276957 6 -  16742782 ggtttc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580767 6 -  91010382 gttttc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175313 6 -    438239 ggtttc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203644 6 -    514179 gttttc
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25431969 185 -  25620257 I
e otoGar3.GL873745           1886631 0 -   2165740 C
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018506 0 +  16417988 C
e calJac3.chr2             203859711 0 + 204313951 C
e canFam3.chr34             11726108 261 +  42124431 I
e macNem1.NW_012012389v1      272154 22 -   1764207 I
e rheMac8.chr6             179532728 22 - 180051392 I

a score=563846.000000
s hg38.chr5_KI270793v1_alt     78799 100 +    126136 actgtgttagccaggatggtctcaatctcctgacctcgtgatctgcccatctcggcctcccaaagtgctgggattaaaggcatgagccaccatgcccggc
s panTro5.chr5             181342162 100 - 181907262 actgtgttagccaggatggtctcaatctcctgacctcgtgatctgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccatgcccagc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059188 100 - 183735486 actgtgttagccaggatggtctcaatctcctgacctcgtgatctgcccacctcggcctcccaaagtgctaggattacaggcgtgagccaccatgcccagc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148331 100 +    698298 accgtgttagccaggatggtctcaatctcctgacctcgtgatctgcccaccttggcctcccaaagtgctggaattacaggcatgagccaccatgcccggc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120575516 100 - 121039945 accgtgttaaccaggatggtctccatctcctgacctcatgatctgcccacctcagcctcccaaagtgctgggattacaggtgtgagccaccatgcccagc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179532750 100 - 180051392 accgtgttagccaggatggtgtcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagt
i rheMac8.chr6             I 22 C 0
s macFas5.chr6             181265902 100 - 181584905 accgtgttagccaggatgctgtcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagt
i macFas5.chr6             I 12 C 0
s macNem1.NW_012012389v1      272176 100 -   1764207 accgtgttagccaggatggtgtcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcacccagt
i macNem1.NW_012012389v1   I 22 C 0
s cerAty1.NW_012009470v1      276963 100 -  16742782 accatgttagccaggatggtgtcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580773 100 -  91010382 accgtgttagccaggatggtgtcgatctcctgacctcatgatctgcccgccttggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccagt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175319 100 -    438239 accgtgttagccaggatggtgtcgatctcctgacctcatgatctgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccagt
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203650 100 -    514179 accatattagccaggctggtgttgatctcctgacctcatgatctgcctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccagt
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25431969 185 -  25620257 I
e otoGar3.GL873745           1886631   0 -   2165740 C
e cebCap1.NW_016108158v1      102975  73 +    298490 I
e saiBol1.JH378155          16018506   0 +  16417988 C
e calJac3.chr2             203859711   0 + 204313951 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=50328.000000
s hg38.chr5_KI270793v1_alt     78899 7 +    126136 cTCACTT
s panTro5.chr5             181342262 7 - 181907262 cTCACTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059288 7 - 183735486 cTCACTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148431 7 +    698298 cTCACTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120575616 7 - 121039945 cTCACTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179532850 7 - 180051392 cTCACTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266002 7 - 181584905 cTCACTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272276 7 -   1764207 cTCACTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      277063 7 -  16742782 cTCACTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580873 7 -  91010382 cTCACTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175419 7 -    438239 cTCACTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203750 7 -    514179 cTCACTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203859711 7 + 204313951 CCCACTT
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25431969 185 -  25620257 I
e otoGar3.GL873745           1886631 0 -   2165740 C
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018506 0 +  16417988 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=293556.000000
s hg38.chr5_KI270793v1_alt     78906 42 +    126136 TTC--AAAATAACTCTTTATTCATTTGTGTGTATGCCatgtgtg
s panTro5.chr5             181342269 42 - 181907262 TTC--aaaataactctttattcatttgtgtgtatgccatgtgtg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059295 42 - 183735486 TTC--AAAATAACTCTTTATTCATTTGTGTGTATGCCatgtgtg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148438 42 +    698298 TTC--AAAATAACTCTTTATTCATTTGTCTGTATGCCATGTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120575623 42 - 121039945 TTC--AAAAAAACTCTTTATTCATTTGTGTGTATGCCACGTGTG
i nomLeu3.chr6             C 0 I 274
s rheMac8.chr6             179532857 42 - 180051392 TTC--AAAATAACTCTCTATTCATTTGTGTGTATGCCatgtgtg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266009 42 - 181584905 TTC--aaaataactctctattcatttgtgtgtatgccatgtgtg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272283 42 -   1764207 TTC--AAAATAACTCTCTATTCATTTGTGTGTATGCCATGTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      277070 42 -  16742782 TTC--AAAATAACTCTCTATTCATTTGTGTGTATGCCATGTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580880 42 -  91010382 TTC--AAAATAGCTCTCTATTCATTTGTGTGTATGCCATGTGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175426 38 -    438239 TTC--AAAATAA----CTATTCATTTGTGTGTATGCCATGTGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203757 41 -    514179 TTC--AAAATAACTCTCTATTCATTTGTGTGTATG-CATGTGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203859718 44 + 204313951 TTCAAAAAATAACTCTTTATTCATTTGTGTGTATGCCATGTGCG
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1886631 39 -   2165740 TTA--AAAATAACTTT---TTCATTCATTTGTATGTTGTGTGTG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25431969 185 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018506  0 +  16417988 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=508624.000000
s hg38.chr5_KI270793v1_alt     78948 89 +    126136 ttcactattt-aaaaacaattagaagctatagaaaactaaaagttaataaagtaaaacccatcccaaatcttactatctagagcattgtt
s panTro5.chr5             181342311 89 - 181907262 ttcactattt-aaaaacaattagaagctatagaaaactaaaagttaataaagtaaaacccatcccaaatcttactatctagagcattgtt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059337 89 - 183735486 ttcactattt-aaaaacaattagaagctatagaaaactaaacgttaatagagtaaaacccatcccaaatcttactatctagagcattgtt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148480 89 +    698298 TTCACTATTT-AAAAACAATTAGAAGCTATAGAAAACTAAAAGTTAATAAAGTAAAACCCAGCCCAACTCTTACTATCTAGAGCATTGTT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179532899 89 - 180051392 ttcactattt-aaaaaaaattagaagctatagaaaactaaaagttaataaagtaaaacccatcccaaatcttactatctagagcattgtt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266051 89 - 181584905 ttcactattt-aaaaaaaattagaagctatagaaaactaaaagttaataaagtaaaacccatcccaaatcttactatctagagcattgtt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272325 90 -   1764207 TTCACTATTTAAAAAAAAAATAGAAGCTATAGAAAACTAAAAGTTAATAAAGTAAAACCCATCCCAAATCTTACTATCTAGAGCATTGTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      277112 89 -  16742782 TTCACTATTT-TAAAAAAATTAGAAGCTACAGAAAACTAAAAGTTAATAAAGTAAAACCCATCCCAAATCTTACTATCTAGAGCATTGTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90580922 89 -  91010382 TTCACTattt-taaaaaaattagaagctatagaaaactaaaagttaataaagtaaaacccatcccaaatcttactatctagagcattgtt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175464 89 -    438239 TTCACTattt-taaaaaaattagaagctatagaaaactaaaagttaataaagtaaaacccatcccaaatcttactatctagagcattgtt
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203798 89 -    514179 TTCACTATTT-AAAAAAAATTAGAAGCTATAGAAAACTAAAAGTTAATAAAGTAAAATCCATCCCAAATCTTACTATCTAGAGCATCATT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203859762 85 + 204313951 TTCGTGATTT---AAAACATTGGAGGCTGTGGAAAACTAACAGTTGAGGGAGTAAAACCCA--AAAAATCTTACCATCTAGAGCGTCGTT
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1886670 71 -   2165740 TTCACTAT---AAAAATAATTGGAAGCTATAGAAAAGTAAAA----------------CCATCCTGAATCTCACTGTGCAAAGCATTGAC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25431969 185 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018506  0 +  16417988 C
e canFam3.chr34             11726108 261 +  42124431 I
e nomLeu3.chr6             120575665 274 - 121039945 I

a score=589798.000000
s hg38.chr5_KI270793v1_alt     79037 101 +    126136 aagatccaattacatttcagcccagtcacttttctg----------tgcatataGAATATTCCT----CAGACAATCACAATATGCATCAATTTGCATATGTA---------------GATGTTGATTTT-
s panTro5.chr5             181342400 101 - 181907262 aagatccaattacatttcagcccagtcacttttctg----------tgcatatagaatattcct----cagacaatcacaatatgtatcaatttgcatatgta---------------gatgttgatttt-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059426 101 - 183735486 aagatccaattacatttcagcccagtcacttttctg----------tgcatatagaatattcct----cagacaatcacaatatgcatcaatttgcatatgta---------------gatgttgatttt-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148569 101 +    698298 AAGATCCAATTACATTTCAGCCCAGTCACTTTTCTG----------TGCATATAGAATATTCCT----CAAACAATCACAATATGCATCAATTTACATATGTA---------------GATGTTGATTTT-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120575939 100 - 121039945 aagaCCCAGTTACATTTCAGCCCAGTCACTTTTCTG----------TGCATATAGACTATTCCT----CAGACAATCAGAACATGCATCAATTTACATACGTA---------------GATGTTGA-TTT-
i nomLeu3.chr6             I 274 C 0
s rheMac8.chr6             179532988 100 - 180051392 aagacccaatcacatttcagcccagtcacttttctg----------tgcatgtagaatattcct----cagacaatcacaagatacatcaatttacatacgta---------------gatcttga-ttt-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266140 100 - 181584905 aagacccaatcacatttcagcccagtcacttttctg----------tgcatgtagaatattcct----cagacaatcacaaggtacatcaatttacatacgta---------------gatcttga-ttt-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272415 100 -   1764207 AAGACCCAATCACATTTCAGCCCAGTCACTTTTCTG----------TGCATGTAGAATATTCCT----CAGACAATCACAAGATACATCAATTTACATACGTA---------------GATCTTGA-TTT-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      277201 100 -  16742782 AAGACCCAATTACATTTCAGCCCAGTCACTTTTCTG----------TGCATGTAGAATATTCCT----CAGACAATCACAAGATACATCAATTTACATACGTA---------------GATCTTGA-TTT-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90581011 100 -  91010382 aagacccaattacatttcagcccagtcacttttctg----------tgcatgtagaatattcct----cagacaatcacaagatacatcaatttacatacgta---------------gatcttga-ttt-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175553  96 -    438239 aagacccaattacatttcagcccagtcacttttctg----------tgcatgtagaatattcct--------caatcacaagatacatcaatttacatacgta---------------gatcttga-ttt-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203887 101 -    514179 AAGACCCAATTACATTTCAGCCCAGTCACTTTTCTG----------TGCATGTAGAATATTCCT----CAGACAATCACAAGATACATCAATTTACATCCGTA---------------GATCTTGATTTT-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203859847 105 + 204313951 AAGATCCAGTCACATTTCAGCCCAGCCG------TG----------CTCGCGAGGAATATTCCT--------CAATGACAATGTGCATCAATTTACACATGTATGTAAATAGTCAGGGGACTATGA-TTT-
i calJac3.chr2             C 0 I 1
s otoGar3.GL873745           1886741 110 -   2165740 AAGATCTCCATATGTTTCCA-TAAGTGGCTTTTCTGTCTGTGCCTATTTGTGTATGATATTCCTTTCTTAGATAGTGTCA---TGCA-CAAGGTACATAGATG---------------GGTCTTGG-CTTC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25431969 185 -  25620257 I
e cebCap1.NW_016108158v1      102975  73 +    298490 I
e saiBol1.JH378155          16018506   0 +  16417988 C
e canFam3.chr34             11726108 261 +  42124431 I

a score=53505.000000
s hg38.chr5_KI270793v1_alt     79138 7 +    126136 TTTCCCT
s panTro5.chr5             181342501 7 - 181907262 tttccct
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059527 7 - 183735486 tttccct
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148670 7 +    698298 TTTCCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576039 7 - 121039945 TTTCCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179533088 7 - 180051392 tttcctt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266240 7 - 181584905 tttcctt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272515 7 -   1764207 TTTCCTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      277301 7 -  16742782 TTTCCTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90581111 7 -  91010382 tttccct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175649 7 -    438239 tttcctt
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203988 7 -    514179 TTTCCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203859953 7 + 204313951 GTCCCCT
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16018506 7 +  16417988 tccCCCT
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1886851 7 -   2165740 TTTTCCT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25431969 185 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I

a score=592866.000000
s hg38.chr5_KI270793v1_alt     79145 61 +    126136 CACATCACACAGAGAACATTTTTCCATATCATTAAAA--------TTCAAATTGAAGCATCATTTATTT
s panTro5.chr5             181342508 61 - 181907262 cacatcacacagagaacatttttccatgtcattaaaa--------ttcaaattgaagcatcatttattt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059534 61 - 183735486 cacatcacacagagaacatttttccatgtcattaaaa--------ttcaaattgaagcatcatttattt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148677 61 +    698298 CACATCACACAGAGAACATTTTTCCATGTCATTAAAA--------TTCAAATTGAAGCATCATTTATTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576046 61 - 121039945 CACATCACACAGAGAACATTTTTCCACGTCATTAAAA--------TTCAAATTGAAGCACCATTTATTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179533095 61 - 180051392 aacatcacacagagaacatttttccatgtcattaaaA--------CTCAAATTGAAGTATCATTTATTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266247 61 - 181584905 aacatcacacagagaacatttttccatgtcattaaaa--------ctcaaattgaagtatcatttattt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272522 61 -   1764207 AACATCACACAGAGAACATTTTTCCATGTCATTAAAA--------CTCAAATTGAAGTATCATTTATTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      277308 61 -  16742782 AACATCACACAGAGAACATTTTTCCATGTCATTAAAA--------CTCAAATTGAAGtatcatttattt
i cerAty1.NW_012009470v1   C 0 I 350
s chlSab2.chr4              90581118 61 -  91010382 aacatcacacagagaacatttttccatgtcattaaaA--------CTCAAATTGAAGTATCATTTATTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175656 61 -    438239 aacatcacacagagaacgtttttccatgtcattaaaA--------CTCAAATTGAAGTATCATTTATTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      203995 61 -    514179 AACATCACACAGAGAACATTTTTCCATGTCATTAAAA--------CTCAAATTGAAGTATCATTTATTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203859960 69 + 204313951 CACATCACACAGAGAACATTTTTCCACGTCATTAAAATTCAAAAGTTCAAACTGAAGTATCATTTATTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16018513 69 +  16417988 AACGTCACACAGAGAACATTTCTCCATGTCACCAAAATCCAAAAATTCAAATTGAAGTATCATTTATTT
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25432154 69 -  25620257 CACATCACACAGAGGACATTTCTCCATGTCATTAAAATTCAAAAATTCAAATTGAAGTATCATTTATTT
i aotNan1.NW_018503740v1   I 185 C 0
s otoGar3.GL873745           1886858 61 -   2165740 AACATCACACAGAGAACATAGTTTCATGATATTAAAA--------TTCAAATTGAAGCATTGTTTATTT
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I

a score=186924.000000
s hg38.chr5_KI270793v1_alt     79206 23 +    126136 ATGACTCTTCACTTGCTGGGTTT
s panTro5.chr5             181342569 23 - 181907262 atgactCTTCACTTGCTGGGTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059595 23 - 183735486 atgactCTTCACTTGCTGGGTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148738 23 +    698298 ATGACTCTTCACTTGCTGGGTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576107 23 - 121039945 ATGACTCTTCACTTGCTGGATTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179533156 23 - 180051392 ATAACTTCTCACTTGTTGGGTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266308 23 - 181584905 ataactTCTCACTTGTTGGGTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272583 23 -   1764207 ATAACTTCTCACTTGTTGGGTTT
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90581179 23 -  91010382 ATAACTTCTCACTTGTTGGGTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175717 23 -    438239 ATAACTTCTCACTTGTTGGGTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204056 23 -    514179 ATAACTTCTCACTTGTTGGGTTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203860029 23 + 204313951 ATAACTTTTCACTTGTTGGATTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16018582 23 +  16417988 ATAACTTTTTACTTGTTGGGTTT
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25432223 23 -  25620257 ATAACTTTTCACTTGCTGGGTTT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1886919 23 -   2165740 ATACATTTTTACTTGTTAGGTTT
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e cerAty1.NW_012009470v1      277369 350 -  16742782 I

a score=153917.000000
s hg38.chr5_KI270793v1_alt     79229 21 +    126136 GCATAATCAACCATTTCGGCC
s panTro5.chr5             181342592 21 - 181907262 GCATAATCAACCATTTCGGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059618 21 - 183735486 GCATAATCAACCATTTTGGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148761 21 +    698298 GCATAATCAACCATTTTGGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179533179 21 - 180051392 GCATAATTGACCATTTCAGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266331 21 - 181584905 GCGTAATTGACCATTTCAGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272606 21 -   1764207 GCATAATTGACCATTTCAGCC
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90581202 21 -  91010382 GCATAATTGACCATTTGAGCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175740 21 -    438239 GCATAATTGACCATTTCAGCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204079 21 -    514179 GCATAATTGACCATTTTAGCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203860052 21 + 204313951 GCATAGTTGACCATTTCAGCC
i calJac3.chr2             C 0 T 21
s saiBol1.JH378155          16018605 21 +  16417988 GCATAATTGACCACTTCAGCC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25432246 21 -  25620257 GCATAATTGACCATTTCAGCC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1886942 21 -   2165740 GCATAATTGACCATTTTAGCC
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e nomLeu3.chr6             120576130  0 - 121039945 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I

a score=105457.000000
s hg38.chr5_KI270793v1_alt     79250 18 +    126136 AGTAGAGTTTCAGGTAGA---
s panTro5.chr5             181342613 18 - 181907262 AGTAGAGTTTCAGGTAGA---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059639 18 - 183735486 AGTAGAGTTTCAGGTAGA---
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148782 18 +    698298 AGTAGAGTTTCAGGTAGA---
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179533200 18 - 180051392 GGTAGAATTTCAGGTCGA---
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266352 18 - 181584905 GGTAGAATTTCAGGTCGA---
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272627 18 -   1764207 GGTAGAATTTCAGGTCGA---
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90581223 18 -  91010382 GGTAGAATTTCAGGTCAA---
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175761 18 -    438239 GGTAGAATTTCAGGTCGA---
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204100 18 -    514179 GGTAGAATTTCAGGTCGA---
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16018626 18 +  16417988 AGTAGAATTTCAGGTAGA---
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25432267 18 -  25620257 GGTAGAATTTCAGGTAGA---
i aotNan1.NW_018503740v1   C 0 I 155
s otoGar3.GL873745           1886963 21 -   2165740 AGTAGAATTTCAGGTAAATGA
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e calJac3.chr2             203860073 21 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e nomLeu3.chr6             120576130  0 - 121039945 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I

a score=6006.000000
s hg38.chr5_KI270793v1_alt     79268 1 +    126136 T
s panTro5.chr5             181342631 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059657 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148800 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179533218 1 - 180051392 T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266370 1 - 181584905 T
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272645 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90581241 1 -  91010382 T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175779 1 -    438239 T
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204118 1 -    514179 T
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16018644 1 +  16417988 T
i saiBol1.JH378155         C 0 T 40
s otoGar3.GL873745           1886984 1 -   2165740 T
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e calJac3.chr2             203860073 21 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e nomLeu3.chr6             120576130 0 - 121039945 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I

a score=61712.000000
s hg38.chr5_KI270793v1_alt     79269 17 +    126136 TGGTACCAG---AATGTGAA
s panTro5.chr5             181342632 17 - 181907262 TGGTACCAG---AACGTGAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059658 17 - 183735486 TGGTACCAG---AATGTGAA
i panPan2.chr5             C 0 I 1
s gorGor5.CYUI01015805v1      148801 17 +    698298 CAGTACCAG---AATGTGAA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179533219 17 - 180051392 TGGTACCGG---AAGGTGAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266371 17 - 181584905 TGGTACTGG---AAGGTGAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272646 17 -   1764207 TGGTACCGG---AAGGTGAA
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90581242 17 -  91010382 TGGTACCGG---AAGGTGAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175780 17 -    438239 TGGTACCGG---AAGGTGAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204119 17 -    514179 TGGTACCGG---AAGGTGAA
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1886985 20 -   2165740 CAAAACCAAACCAGTGTGAA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860073 21 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e nomLeu3.chr6             120576130  0 - 121039945 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I

a score=4095.000000
s hg38.chr5_KI270793v1_alt     79286 1 +    126136 A
s panTro5.chr5             181342649 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148818 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179533236 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266388 1 - 181584905 A
i macFas5.chr6             C 0 T 58
s macNem1.NW_012012389v1      272663 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90581259 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175797 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204136 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1887005 1 -   2165740 A
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860073 21 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e nomLeu3.chr6             120576130 0 - 121039945 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e panPan2.chr5             183059675 1 - 183735486 I

a score=180.000000
s hg38.chr5_KI270793v1_alt     79287 1 +    126136 A
s panTro5.chr5             181342650 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148819 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s otoGar3.GL873745           1887006 1 -   2165740 G
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860073 21 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e nomLeu3.chr6             120576130 0 - 121039945 C
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e macFas5.chr6             181266389 58 - 181584905 T
e rheMac8.chr6             179533237 0 - 180051392 C
e panPan2.chr5             183059675 1 - 183735486 I

a score=4718.000000
s hg38.chr5_KI270793v1_alt     79288 6 +    126136 CAGATC
s panTro5.chr5             181342651 6 - 181907262 CAGATC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059676 6 - 183735486 CAGATC
i panPan2.chr5             I 1 C 0
s gorGor5.CYUI01015805v1      148820 6 +    698298 CGGATC
i gorGor5.CYUI01015805v1   C 0 C 0
s otoGar3.GL873745           1887007 6 -   2165740 TAGATC
i otoGar3.GL873745         C 0 T 71
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860073 21 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e nomLeu3.chr6             120576130 0 - 121039945 C
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e macFas5.chr6             181266389 58 - 181584905 T
e rheMac8.chr6             179533237 0 - 180051392 C

a score=5184.000000
s hg38.chr5_KI270793v1_alt     79294 9 +    126136 GAGGGAAGA
s panTro5.chr5             181342657 9 - 181907262 GAGGGAAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059682 9 - 183735486 GAGGGAAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148826 9 +    698298 GAGGGAAGA
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1887013 71 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860073 21 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e nomLeu3.chr6             120576130 0 - 121039945 C
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e macFas5.chr6             181266389 58 - 181584905 T
e rheMac8.chr6             179533237 0 - 180051392 C

a score=18090.000000
s hg38.chr5_KI270793v1_alt     79303 9 +    126136 GCATAATCA
s panTro5.chr5             181342666 9 - 181907262 GCATAATCA
i panTro5.chr5             C 0 T 74
s panPan2.chr5             183059691 9 - 183735486 GCATAATCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148835 9 +    698298 GCATAATTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576130 9 - 121039945 GCATAATCG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266331 9 - 181584905 GCGTAATTG
i macFas5.chr6             T 58 C 0
s calJac3.chr2             203860052 9 + 204313951 GCATAGTTG
i calJac3.chr2             T 21 C 0
s saiBol1.JH378155          16018605 9 +  16417988 GCATAATTG
i saiBol1.JH378155         T 40 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1887013 71 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e rheMac8.chr6             179533237 0 - 180051392 C

a score=66766.000000
s hg38.chr5_KI270793v1_alt     79312 28 +    126136 ACCATTTCAGCCAGTAGAGTTTCAGGTA
s panTro5.chr5             181342601 28 - 181907262 ACCATTTCGGCCAGTAGAGTTTCAGGTA
i panTro5.chr5             T 74 C 0
s panPan2.chr5             183059700 28 - 183735486 ACCATTTCAGCCAGTAGAGTTTCAGGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148844 28 +    698298 ACCATTTCAGCCAGTAGAATTTCAGGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576139 28 - 121039945 ACCACTTCAGCCAGCAGAGTTTCAGGTA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266340 28 - 181584905 ACCATTTCAGCCGGTAGAATTTCAGGTC
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203860061 28 + 204313951 ACCATTTCAGCCAGTAGAATTTCAGGTA
i calJac3.chr2             C 0 T 37
s saiBol1.JH378155          16018614 28 +  16417988 ACCACTTCAGCCAGTAGAATTTCAGGTA
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1887013 71 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=5922.000000
s hg38.chr5_KI270793v1_alt     79340 3 +    126136 GAT
s panTro5.chr5             181342629 3 - 181907262 GAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059728 3 - 183735486 GAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148872 3 +    698298 GAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576167 3 - 121039945 GAT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266368 3 - 181584905 GAT
i macFas5.chr6             C 0 C 0
s saiBol1.JH378155          16018642 3 +  16417988 GAT
i saiBol1.JH378155         C 0 T 40
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1887013 71 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e calJac3.chr2             203860089 37 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e rheMac8.chr6             179533237 0 - 180051392 C

a score=40080.000000
s hg38.chr5_KI270793v1_alt     79343 34 +    126136 TGGTACCAGAATGTGAAGACGGATCAAGGGAAGA
s panTro5.chr5             181342632 34 - 181907262 TGGTACCAGAACGTGAAAACAGATCGAGGGAAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059731 34 - 183735486 CAGTACCAGAATGTGAAAACGGATCGAGGGAAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148875 34 +    698298 TGGTACCAGAATGTGAAAACGGATCAAGGGAAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576170 34 - 121039945 TGGTACCAGAATGTGAAGATGGATTAAGGGAAGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266371 34 - 181584905 TGGTACTGGAAGGTGAAAATGGATCAAGGGAAGA
i macFas5.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1887013 71 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860089 37 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=3600.000000
s hg38.chr5_KI270793v1_alt     79377 1 +    126136 G
s panTro5.chr5             181342666 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059765 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148909 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576204 1 - 121039945 G
i nomLeu3.chr6             C 0 T 74
s macFas5.chr6             181266405 1 - 181584905 G
i macFas5.chr6             C 0 T 74
s calJac3.chr2             203860052 1 + 204313951 G
i calJac3.chr2             T 37 C 0
s saiBol1.JH378155          16018605 1 +  16417988 G
i saiBol1.JH378155         T 40 C 0
s otoGar3.GL873745           1886942 1 -   2165740 G
i otoGar3.GL873745         T 71 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e rheMac8.chr6             179533237 0 - 180051392 C

a score=108109.000000
s hg38.chr5_KI270793v1_alt     79378 36 +    126136 CATAATCGACCATTTCAGCCAGTAGAGTTTCAGGTA
s panTro5.chr5             181342667 36 - 181907262 CATAATCAACCATTTCAGCCAGTAGAGTTTCAGGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059766 36 - 183735486 CATAATCGACCATTTCAGCCAGTAGAGTTTCAGGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148910 36 +    698298 CATAATCGACCATTTCAGCCAGTAGAGTTTCAGGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576131 36 - 121039945 CATAATCGACCACTTCAGCCAGCAGAGTTTCAGGTA
i nomLeu3.chr6             T 74 C 0
s macFas5.chr6             181266332 36 - 181584905 CGTAATTGACCATTTCAGCCGGTAGAATTTCAGGTC
i macFas5.chr6             T 74 C 0
s calJac3.chr2             203860053 36 + 204313951 CATAGTTGACCATTTCAGCCAGTAGAATTTCAGGTA
i calJac3.chr2             C 0 T 37
s saiBol1.JH378155          16018606 36 +  16417988 CATAATTGACCACTTCAGCCAGTAGAATTTCAGGTA
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1886943 36 -   2165740 CATAATTGACCATTTTAGCCAGTAGAATTTCAGGTA
i otoGar3.GL873745         C 0 T 37
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=5922.000000
s hg38.chr5_KI270793v1_alt     79414 3 +    126136 GAT
s panTro5.chr5             181342703 3 - 181907262 GAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059802 3 - 183735486 GAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148946 3 +    698298 GAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576167 3 - 121039945 GAT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266368 3 - 181584905 GAT
i macFas5.chr6             C 0 C 0
s saiBol1.JH378155          16018642 3 +  16417988 GAT
i saiBol1.JH378155         C 0 T 40
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 37 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e calJac3.chr2             203860089 37 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e rheMac8.chr6             179533237 0 - 180051392 C

a score=40170.000000
s hg38.chr5_KI270793v1_alt     79417 34 +    126136 CGGTACCAGAATGTGAAGACGGATCAAGGGAAGA
s panTro5.chr5             181342706 34 - 181907262 CGGTACCAGAACGTGAAGACGGATCGAGGGAAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059805 34 - 183735486 CAGTACCAGAATGTGAAAACGGATCGAGGGAAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148949 34 +    698298 TGGTACCAGAATGTGAAGATGGATCAAGGGAAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576170 34 - 121039945 TGGTACCAGAATGTGAAGATGGATTAAGGGAAGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266371 34 - 181584905 TGGTACTGGAAGGTGAAAATGGATCAAGGGAAGA
i macFas5.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 37 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860089 37 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=3600.000000
s hg38.chr5_KI270793v1_alt     79451 1 +    126136 G
s panTro5.chr5             181342740 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059839 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148983 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576204 1 - 121039945 G
i nomLeu3.chr6             C 0 T 74
s macFas5.chr6             181266405 1 - 181584905 G
i macFas5.chr6             C 0 T 74
s calJac3.chr2             203860052 1 + 204313951 G
i calJac3.chr2             T 37 C 0
s saiBol1.JH378155          16018605 1 +  16417988 G
i saiBol1.JH378155         T 40 C 0
s otoGar3.GL873745           1886942 1 -   2165740 G
i otoGar3.GL873745         T 37 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e rheMac8.chr6             179533237 0 - 180051392 C

a score=21759.000000
s hg38.chr5_KI270793v1_alt     79452 8 +    126136 CATAATCG
s panTro5.chr5             181342741 8 - 181907262 CATAATCG
i panTro5.chr5             C 0 T 74
s panPan2.chr5             183059840 8 - 183735486 CATAATTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148984 8 +    698298 CATAACTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576131 8 - 121039945 CATAATCG
i nomLeu3.chr6             T 74 C 0
s macFas5.chr6             181266332 8 - 181584905 CGTAATTG
i macFas5.chr6             T 74 C 0
s calJac3.chr2             203860053 8 + 204313951 CATAGTTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16018606 8 +  16417988 CATAATTG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1886943 8 -   2165740 CATAATTG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e rheMac8.chr6             179533237 0 - 180051392 C

a score=86603.000000
s hg38.chr5_KI270793v1_alt     79460 28 +    126136 ACCATTTCAGCCAGTAGAGTTTCAGGTA
s panTro5.chr5             181342675 28 - 181907262 ACCATTTCAGCCAGTAGAGTTTCAGGTA
i panTro5.chr5             T 74 C 0
s panPan2.chr5             183059848 28 - 183735486 ACCATTTCAGCCAGTAGAGTTTCAGGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      148992 28 +    698298 ACCATTTCAGCCAGTAGAGTTTCAGGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576139 28 - 121039945 ACCACTTCAGCCAGCAGAGTTTCAGGTA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266340 28 - 181584905 ACCATTTCAGCCGGTAGAATTTCAGGTC
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203860061 28 + 204313951 ACCATTTCAGCCAGTAGAATTTCAGGTA
i calJac3.chr2             C 0 T 37
s saiBol1.JH378155          16018614 28 +  16417988 ACCACTTCAGCCAGTAGAATTTCAGGTA
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1886951 28 -   2165740 ACCATTTTAGCCAGTAGAATTTCAGGTA
i otoGar3.GL873745         C 0 T 37
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=5922.000000
s hg38.chr5_KI270793v1_alt     79488 3 +    126136 GAT
s panTro5.chr5             181342703 3 - 181907262 GAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059876 3 - 183735486 GAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149020 3 +    698298 GAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576167 3 - 121039945 GAT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266368 3 - 181584905 GAT
i macFas5.chr6             C 0 C 0
s saiBol1.JH378155          16018642 3 +  16417988 GAT
i saiBol1.JH378155         C 0 T 40
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 37 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e calJac3.chr2             203860089 37 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e rheMac8.chr6             179533237 0 - 180051392 C

a score=20338.000000
s hg38.chr5_KI270793v1_alt     79491 18 +    126136 CGGTACCAGAACGTGAAG
s panTro5.chr5             181342706 18 - 181907262 CGGTACCAGAACGTGAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059879 18 - 183735486 TGGTACCAGAATGTGAAG
i panPan2.chr5             C 0 T 222
s gorGor5.CYUI01015805v1      149023 18 +    698298 TGGTACCAGAATATGAAG
i gorGor5.CYUI01015805v1   C 0 I 73
s nomLeu3.chr6             120576170 18 - 121039945 TGGTACCAGAATGTGAAG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266371 18 - 181584905 TGGTACTGGAAGGTGAAA
i macFas5.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 37 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860089 37 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=19482.000000
s hg38.chr5_KI270793v1_alt     79509 16 +    126136 ACGGATCGAGGGAAGA
s panTro5.chr5             181342724 16 - 181907262 ACGGATCGAGGGAAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059675 16 - 183735486 ACAGATCGAGGGAAGA
i panPan2.chr5             T 222 C 0
s gorGor5.CYUI01015805v1      149114 16 +    698298 ACGGATCAAGGGAAGA
i gorGor5.CYUI01015805v1   I 73 C 0
s nomLeu3.chr6             120576188 16 - 121039945 ATGGATTAAGGGAAGA
i nomLeu3.chr6             C 0 T 74
s macFas5.chr6             181266389 16 - 181584905 ATGGATCAAGGGAAGA
i macFas5.chr6             C 0 T 74
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 37 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860089 37 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=110733.000000
s hg38.chr5_KI270793v1_alt     79525 37 +    126136 GCATAATCGACCATTTCAGCCAGTAGAGTTTCAGGTA
s panTro5.chr5             181342740 37 - 181907262 GCATAATCGACCATTTCAGCCAGTAGAGTTTCAGGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059691 37 - 183735486 GCATAATCAACCATTTCAGCCAGTAGAGTTTCAGGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149130 37 +    698298 GCATAATCGACCATTTCAGCCAGTAGAGTCTCAGGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576130 37 - 121039945 GCATAATCGACCACTTCAGCCAGCAGAGTTTCAGGTA
i nomLeu3.chr6             T 74 C 0
s macFas5.chr6             181266331 37 - 181584905 GCGTAATTGACCATTTCAGCCGGTAGAATTTCAGGTC
i macFas5.chr6             T 74 C 0
s calJac3.chr2             203860052 37 + 204313951 GCATAGTTGACCATTTCAGCCAGTAGAATTTCAGGTA
i calJac3.chr2             T 37 T 37
s saiBol1.JH378155          16018605 37 +  16417988 GCATAATTGACCACTTCAGCCAGTAGAATTTCAGGTA
i saiBol1.JH378155         T 40 C 0
s otoGar3.GL873745           1886942 37 -   2165740 GCATAATTGACCATTTTAGCCAGTAGAATTTCAGGTA
i otoGar3.GL873745         T 37 T 37
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=5922.000000
s hg38.chr5_KI270793v1_alt     79562 3 +    126136 GAT
s panTro5.chr5             181342777 3 - 181907262 GAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059728 3 - 183735486 GAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149167 3 +    698298 GAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576167 3 - 121039945 GAT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266368 3 - 181584905 GAT
i macFas5.chr6             C 0 C 0
s saiBol1.JH378155          16018642 3 +  16417988 GAT
i saiBol1.JH378155         C 0 T 40
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 37 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e calJac3.chr2             203860089 37 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e rheMac8.chr6             179533237 0 - 180051392 C

a score=40118.000000
s hg38.chr5_KI270793v1_alt     79565 34 +    126136 CGGTACCAGAACGTGAAGACGGATCGAGGGAAGA
s panTro5.chr5             181342780 34 - 181907262 CGGTACCAGAACGTGAAGACGGATCGAGGGAAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059731 34 - 183735486 CAGTACCAGAATGTGAAAACGGATCGAGGGAAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149170 34 +    698298 CGGTACCAGAATGTGAAAACGGATCGAGGGAAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576170 34 - 121039945 TGGTACCAGAATGTGAAGATGGATTAAGGGAAGA
i nomLeu3.chr6             C 0 T 74
s macFas5.chr6             181266371 34 - 181584905 TGGTACTGGAAGGTGAAAATGGATCAAGGGAAGA
i macFas5.chr6             C 0 T 74
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 37 -   2165740 T
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860089 37 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=112287.000000
s hg38.chr5_KI270793v1_alt     79599 37 +    126136 GCATAATCGACCATTTCAGCCAGTAGAGTTTCAGGTA
s panTro5.chr5             181342814 37 - 181907262 GCATAATCGACCATTTCAGCCAGTAGAGTTTCAGGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059765 37 - 183735486 GCATAATCGACCATTTCAGCCAGTAGAGTTTCAGGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149204 37 +    698298 GCATAATCGACCACTTCAGCCAGTAGAGTTTCAGGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576130 37 - 121039945 GCATAATCGACCACTTCAGCCAGCAGAGTTTCAGGTA
i nomLeu3.chr6             T 74 C 0
s macFas5.chr6             181266331 37 - 181584905 GCGTAATTGACCATTTCAGCCGGTAGAATTTCAGGTC
i macFas5.chr6             T 74 C 0
s calJac3.chr2             203860052 37 + 204313951 GCATAGTTGACCATTTCAGCCAGTAGAATTTCAGGTA
i calJac3.chr2             T 37 T 16
s saiBol1.JH378155          16018605 37 +  16417988 GCATAATTGACCACTTCAGCCAGTAGAATTTCAGGTA
i saiBol1.JH378155         T 40 C 0
s otoGar3.GL873745           1886942 37 -   2165740 GCATAATTGACCATTTTAGCCAGTAGAATTTCAGGTA
i otoGar3.GL873745         T 37 I 34
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=5922.000000
s hg38.chr5_KI270793v1_alt     79636 3 +    126136 GAT
s panTro5.chr5             181342851 3 - 181907262 GAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059802 3 - 183735486 GAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149241 3 +    698298 GAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576167 3 - 121039945 GAT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181266368 3 - 181584905 GAT
i macFas5.chr6             C 0 C 0
s saiBol1.JH378155          16018642 3 +  16417988 GAT
i saiBol1.JH378155         C 0 T 40
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 34 -   2165740 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e calJac3.chr2             203860089 16 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e rheMac8.chr6             179533237 0 - 180051392 C

a score=39924.000000
s hg38.chr5_KI270793v1_alt     79639 34 +    126136 CGGTACCAGAACGTGAAGACGGATCAAGGGAAGA
s panTro5.chr5             181342854 34 - 181907262 CGGTACCAGAACGTGAAGACGGATCGAGGGAAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059805 34 - 183735486 CAGTACCAGAATGTGAAAACGGATCGAGGGAAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149244 34 +    698298 TGGTACCAGAATGTGAAAACGGATCAAGGGAAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576170 34 - 121039945 TGGTACCAGAATGTGAAGATGGATTAAGGGAAGA
i nomLeu3.chr6             C 0 T 74
s macFas5.chr6             181266371 34 - 181584905 TGGTACTGGAAGGTGAAAATGGATCAAGGGAAGA
i macFas5.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 34 -   2165740 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e saiBol1.JH378155          16018645 40 +  16417988 T
e calJac3.chr2             203860089 16 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e cerAty1.NW_012009470v1      277369 350 -  16742782 I
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e rheMac8.chr6             179533237  0 - 180051392 C

a score=2800.000000
s hg38.chr5_KI270793v1_alt     79673 1 +    126136 G
s panTro5.chr5             181342888 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059839 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149278 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576130 1 - 121039945 G
i nomLeu3.chr6             T 74 C 0
s macFas5.chr6             181266405 1 - 181584905 G
i macFas5.chr6             C 0 T 17
s cerAty1.NW_012009470v1      277719 1 -  16742782 G
i cerAty1.NW_012009470v1   I 350 C 0
s saiBol1.JH378155          16018605 1 +  16417988 G
i saiBol1.JH378155         T 40 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 34 -   2165740 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e calJac3.chr2             203860089 16 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798 0 -    438239 C
e chlSab2.chr4              90581260 0 -  91010382 C
e colAng1.NW_012118799v1      204137 0 -    514179 C
e macNem1.NW_012012389v1      272664 0 -   1764207 C
e rheMac8.chr6             179533237 0 - 180051392 C

a score=35761.000000
s hg38.chr5_KI270793v1_alt     79674 20 +    126136 CATAATCGACCATTTCAGCG
s panTro5.chr5             181342889 20 - 181907262 CATAATCGACCATTTCAGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059840 20 - 183735486 CATAATTGACCATTTCAGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149279 20 +    698298 CATAATCGACCATTTCAGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576131 20 - 121039945 CATAATCGACCACTTCAGCC
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      277720 20 -  16742782 CATAATTGACCATTTCAGCC
i cerAty1.NW_012009470v1   C 0 C 0
s saiBol1.JH378155          16018606 20 +  16417988 CATAATTGACCACTTCAGCC
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 34 -   2165740 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e calJac3.chr2             203860089 16 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e macFas5.chr6             181266406 17 - 181584905 T
e rheMac8.chr6             179533237  0 - 180051392 C

a score=45041.000000
s hg38.chr5_KI270793v1_alt     79694 19 +    126136 AGTAGAGTTTCAGGTAGAT
s panTro5.chr5             181342909 19 - 181907262 AGTAGAGTTTCAGGTAGAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059860 19 - 183735486 AGTAGAGTTTCAGGTAGAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149299 19 +    698298 AGTAGAGTTTCAGGTAGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576151 19 - 121039945 AGCAGAGTTTCAGGTAGAT
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      277740 19 -  16742782 GGTAGAATTTCAGGTCGAT
i cerAty1.NW_012009470v1   C 0 C 0
s calJac3.chr2             203860073 19 + 204313951 AGTAGAATTTCAGGTAGAT
i calJac3.chr2             T 16 I 3
s saiBol1.JH378155          16018626 19 +  16417988 AGTAGAATTTCAGGTAGAT
i saiBol1.JH378155         C 0 I 3
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 34 -   2165740 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e macFas5.chr6             181266406 17 - 181584905 T
e rheMac8.chr6             179533237  0 - 180051392 C

a score=42322.000000
s hg38.chr5_KI270793v1_alt     79713 18 +    126136 TGGTACCAGAATGTGAAG
s panTro5.chr5             181342928 18 - 181907262 CGGTACCAGAATGTGAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059879 18 - 183735486 TGGTACCAGAATGTGAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149318 18 +    698298 TGGTACCAGAATGTGAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576170 18 - 121039945 TGGTACCAGAATGTGAAG
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      277759 18 -  16742782 TGGTACCGGAAGGTGAAA
i cerAty1.NW_012009470v1   C 0 C 0
s calJac3.chr2             203860095 18 + 204313951 TGGAACCAGAATGTGAAG
i calJac3.chr2             I 3 C 0
s saiBol1.JH378155          16018648 18 +  16417988 TGGTACCAGAATGTGAAG
i saiBol1.JH378155         I 3 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 34 -   2165740 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e manLeu1.NW_012110441v1      175798  0 -    438239 C
e chlSab2.chr4              90581260  0 -  91010382 C
e colAng1.NW_012118799v1      204137  0 -    514179 C
e macNem1.NW_012012389v1      272664  0 -   1764207 C
e macFas5.chr6             181266406 17 - 181584905 T
e rheMac8.chr6             179533237  0 - 180051392 C

a score=44660.000000
s hg38.chr5_KI270793v1_alt     79731 7 +    126136 ATGGATT
s panTro5.chr5             181342946 7 - 181907262 ATGGATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059897 7 - 183735486 ATGGATT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149336 7 +    698298 ACGGATT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576188 7 - 121039945 ATGGATT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179533237 7 - 180051392 ATGGATC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266389 7 - 181584905 ATGGATC
i macFas5.chr6             T 17 C 0
s macNem1.NW_012012389v1      272664 7 -   1764207 ATGGATC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      277777 7 -  16742782 ATGGATC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90581260 7 -  91010382 ATGGATC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175798 7 -    438239 ATGGATC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204137 7 -    514179 ATGGATC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203860113 7 + 204313951 ATGGATA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16018666 6 +  16417988 ATGGAT-
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e otoGar3.GL873745           1886979 34 -   2165740 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I

a score=1040605.000000
s hg38.chr5_KI270793v1_alt     79738 162 +    126136 AAGGGAAAAGAAACTGGAATTCCAGAACTAGACTCAGGTGTATACGGAAA-TGGCATATCACAGAGACAGCATTGCCAACCCATGGGAAATGGATGATTCTACCCGAGGTTGCATGATGCCCTGCTAGGCATTTGGAGAATGTTAAG-CTGGGACCACAGTTCA
s panTro5.chr5             181342953 162 - 181907262 AAGGGAAGAGAAACTGGAATTCCAGAACTAGACTCAGGTGTATACGGAAA-TGGCATATCACAGAGACAGCATTGCCAACCCATGGGAAATGGATGATTCTACCCGAGGTTGCATGATGCCCTGCTAGGCATTTGGAGAATGTTAAG-CTGGGACCACAGTTCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183059904 162 - 183735486 AAGGGAAGAGAAACTGGAATTCCAGAACTAGACTCAGGTGTATACGGAAA-TGGCATATCACAGAGACAGCATTGCCAACCCATGGGAAATGGATGATTCTACCCGAGGTTGCATGATGCCCTGCTAGGCATTTGGAGAATGTTAAG-CTGGGACCACAGTTCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149343 162 +    698298 AAGGGAAGAGAAACTGGAATTCCAGAACTAGACTCAGGTGTATACGGAAA-TGGCATATCACAGAGACAGCATTGCCAACCCCTGGGAAATGGATGATTCTACCTGAGGTTGCATGATGCCCTGCTAGGCATTTGGACAATGTTAAG-CTGGGACCACAGTTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576195 162 - 121039945 AAGGGAAGAGAAACTGGAATTCCAGAACTAGACTCAGGTGTATATGGAAA-TGGCACATCACAGAGACAGCATTGCCAACCCATGGGAAATGGATGATTCTACCTGAGGTTGCATGATGCCCTGCTAGGCATTTGGAGAATGTTAAG-CTGGGACCACAGTTCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179533244 161 - 180051392 AAGGGAAGAGAAACT-GAATTCTAGAACTAGACTCAGGGGTACATGGAAA-TGGCATATCACCGAGACAGCATTGCCAGCCCATGGGAAATGGATGATTCCACCCGAGGTTGCATGAGAACTTGCTGGGCATTTGGAGAATGGTAAG-CTGGCACCACAGTTCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266396 161 - 181584905 AAGGGAAGAGAAACT-GAATTCTAGAACTAGACTCAGGGGTACATGGAAA-TGGCATATCACCGAGACAGCATTGCCAGCCCATGGGAAATGGATGATTCCACCCGAGGTTGCATGAGAACCTGCTGGGCATTTGGAGAATGGTAAG-CTGGCACCACAGTTCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272671 161 -   1764207 AAGGGAAGAGAAACT-GAATTCTAGAACTAGACTCAGGGGTACATGGAAA-TGGCATATCACCGAGACAGCATTGCCAGCCCATGGGAAATGGATGATTCCACCCGAGGTTGCATGAGAACCTGCTGGGCATTTGGAGAATGGTAAG-CTGGCACCACAGTTCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      277784 161 -  16742782 AAGGGAAGAGAAACC-GAGTTCTAGAACTAGACTCAGGGGTATATGGAAA-TGGCATATCACCGAGACAGCATTGCCAGCCCATGGGAAATGGATGATTCCACCCGAGGTTGCATGAGAACCTGCTGGGCATTTGGAGAATGGTAAG-CTGGCACCACAGTTCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90581267 161 -  91010382 AAGGGAAGAGAAACT-GAATTCTAGAACTAGACTCAGGTGTATATGGAAA-TGGCATATCACCGAGACAGCATTGCCAGCCCGTGGGAAATGGATGATTCCACCCGACGTTGCATGAGAACCTGCTGGGCATTTGGAGAATGGTAAG-CTGGCACCACAGTTCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175805 161 -    438239 AAGGGAAGAGAAACC-GAGTTCTAGAACTAGACTCAGGGGTATATGGAAA-TGGCATATCACCGAGACAGCATTGCCAGCCCGTGGGAAATGGATGATTCCACCCGAGGTTGCATGAGAACCTGCTGGGCATTTGGAGAATGGTAAG-CTGGCACCACAGTTCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204144 161 -    514179 AAGGGAAGAGAAACT-GAATTCTAGAACTAGACTCAGGTGTATATGGAAA-TGGCATATCACAGAGACAGCATTGCCAGCCCATAGGAAATGGATGATTCCACCCGAGGTTGCATGAGAACCTGCTGGGCATTTGGAGAATGGTAAG-CTGGCACCACAGTTCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203860120 136 + 204313951 TAGGGGACAGAATCTGAAAGTCTAGAAATAGACT--GGTGTACATGGAAACTGGCACATCAGAGAGACGGCGTTGCCCATCCATGGGAAATGG-TGATTCTACCT------------------GCTAGGCACTGGAAGAATATCAGA-CAGG--CCACAA----
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16018672 136 +  16417988 CAAGGGAGAGAAACTGACAGTCTAGAAATAGACT--CGTGTGCACAGAAACTGGCACGTTGGAGAGACGGCATTGCCAGTCCGTGGG-AATGG-TGATGGCACCC------------------GCTGGGCACTGGGAGAATGGTAGGCCAGG--CTGCAG----
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1887013 143 -   2165740 -AAGGAACAAAACCTGGCATTTTAGAAACAGATTTGCATTTATGTAGACACTGGTATATTATAGAGATAGCCTTG---------GGAAAATGATTG--TCTACCAGAGGCT--ATGACTGCCAGCTGGATGTTTGGAGACCATGCAG-CTGGGAACTC------
i otoGar3.GL873745         I 34 C 0
e aotNan1.NW_018503740v1    25432285 155 -  25620257 I
e cebCap1.NW_016108158v1      102975  73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I

a score=1648695.000000
s hg38.chr5_KI270793v1_alt     79900 188 +    126136 TTCTTTCTGGCAGTGTGAGTGGTGCAGAAAAATGATTCACCATTTAAAATCAACGGATTGCTGGG-CCactttcttcccttctcctttgcc--tgctaatcccgccctcaggactcgcccccagcatcacttcctccaggaagact-cccctaagccgagtgccctctctctttggggcccACGGGAGCTGA
s panTro5.chr5             181343115 188 - 181907262 TTCTTTCTGGCAGTGTGAGTGGTGCAGAAAAACGATTCACCATTTAAAATCAACGGATTGCTGGG-CCactttcttcccttctcctttgcc--tgctaatcccgccctcaggactcgcccccagcatcacttcctccaggaagact-cccctaagccgagtgccctctctctttggggcccACGGGAGCTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183060066 188 - 183735486 TTCTTTCTGGCAGTGTGAGTGGTGCAGAAAAATGATTCACCATTTAAAATCAACGGATTGCTGGG-CCactttcttcccttctcctttgcc--tgctaatcccgccctcaggactcgcccccagcatcacttcctccaggaagact-cccctaagccgagtgccctctctctttggggcccACGGGAGCTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149505 188 +    698298 TTCTTTCTGGCAGTGTGAGTGGTGCAGAAAAATGATTCACCATTTAAAATCAACGGATTGCTGGG-CCACTTtcttcccttctcctttgcc--tgctaatcccgccctcaggactcgcccccagcatcacttcctccaggaagact-cccctaagccAAGAGCCCTCTCTCTTTGGGGCCCATGGGAACTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576357 188 - 121039945 TTCTTTCTGGCAGTGTGAGTGGTGCAGAAAAATGATTCCCTGTTTAAAATCGACGGATTGCTGAG-CCactttcttcccttctcctttgcc--tgctaatcccaccctcaggactcgcctccagcatcacttcctccaggaagact-cccctaagccgagtgccctctctctttggggcccATGGGAGCTGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179533405 188 - 180051392 TTCTTTCTGCCAGTGTGAGTGGTGCAGACAAATGAGTCACCGTTTAAAATCAACGGATTGCTGGG-CCactttcttccctcctcctttgcc--tgctaatcctgccctcaggactctcccctagcatcacctcctccaggaagcct-cccctaagccgagtgctctctctctttggggcccACGGGAGCTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266557 188 - 181584905 TTCTTTCTGCCAGTGTGAGTGGTGCAGAAAAATGAGTCACCGTTTAAAATCAACGGATTGCTGGG-CCactttcttccctcctcctttgcc--tgctaatcctgccctcaggactctcccctagcatcacctcctccaggaagcct-cccctaagccgagtgctctctctctttggggcccACGGGAGCTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      272832 188 -   1764207 TTCTTTCTGCCAGTGTGAGTGGTGCAGAAAAATGAGTCACCGTTTAAAATCAACGGATTGCTGGG-CCactttcttccctcctcctttgcc--tgctaatcctgccctcaggactctcccctagcatcacctcctccaggaagcct-cccctaagccgagtgctctctctctttggcgcccACGGGAGCTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      277945 188 -  16742782 TTCTTTCTGCCAGTGTGAGTGGTGCAGAAAAATGAATCACCGTTTAAAATCAACGGATTGctgga-ccactttcttccctcctcctttgcc--tgctaatcctgccctcaggactctcccctagcatcacctcctccaggaagcct-cccctaagccGAGCGCTCTCTCTCTTTGGGGCCCACGGGAGCTGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90581428 188 -  91010382 TTCTTTCTGCCAGTGTGAGTGGTGCAGAAAAATGAGTCACCGTTTAAAATCAACGGATTGCTGGG-CCactttcttctgtcctcctttgcc--tgctaatcctgccctcaggactctcccctagcatcacctcctccaggaagcct-cccctaagccgagtgctctctctctttggggcccATGGGAGCTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      175966 188 -    438239 TTCTTTCTGCCAGTGTGAGTGGTGCAGAAAAATGAATCACCGTTTAAAATCAACGGATTGCTGGG-CCactttcttccctcctcctttgcc--tgctaatcctgccctcaggactctcccctagcatcacctcctccaggaagcct-cccctaagccgagtgctctctctctttggggcccACGGGAGCTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204305 187 -    514179 TTCTTTCTGCCACTGTGAGTGGTGCAGAAAAACGAGTCACTGTTTAAAATCAACGGATtgctggg--cactttcttccctcctcctttgcc--tgctaatcccaccctcaggactctcccctagcatcacctcctccaggaagcct-cccctaagccgagtgctctctctctttggggcccATGGGAGCTGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203860256 189 + 204313951 TTCTTTCTGCCAGGGTTAGTGGTGCAGAAAA--GAGTCGCCGTGGAAAATCAATAGActgctggggtcaccttcttccctcctcctttgcctgtgctaatcccaccctcaggactcacccccagcgtcacctcctccaggaggcct-ccctgaagccaggtgccctctctcttcggggcccATGGGAGCTGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16018808 188 +  16417988 TCCTTTCTGCCAGGGTGACTGGTGCAG--AA--GAGTCACCACTGAAAATCAACAGATtgctggggtcaccttcttcccgcctcctttgcctgtgctaatccccccctcaggactcacccccagcgtcacctcctctacgatgcctcccctgaagccaggtgccatctctctttggggcccatgggagctga
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25432440 188 -  25620257 TTCTTTCTGCCAGGGTGAGTGGTGCAGAAAA--GAGTCGCCATGGAAAATGAATAGATtgctggggtcaccttcttcccgcctcctttgcctgtgctaatcccaccctcaggactca-ccccagcgtcacctcctccaggaggcct-ccccgaagccagataccctctctctttggggcccATGGGAGCTGA
i aotNan1.NW_018503740v1   I 155 I 112
s otoGar3.GL873745           1887156 164 -   2165740 -------------TGTGCATGCTGCAGGAAAAGGGATTATTGTTTAAGCTCAGAGGATTGCCAAG---ATTCCCATCTCTCCTTCTTTTCC------AGCCCTGCCCTCAGGACCCA--CCTGGCATTACCTCCTCTAGGAAACCT-CACC-AAGCCATGTGCC--CTCTCTTTGGGGGCCAAGGGCTCTCA
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      102975  73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I

a score=5757.000000
s hg38.chr5_KI270793v1_alt     80088 1 +    126136 C
s panTro5.chr5             181343303 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183060254 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149693 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576545 1 - 121039945 C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179533593 1 - 180051392 C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266745 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273020 1 -   1764207 C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      278133 1 -  16742782 C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90581616 1 -  91010382 T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      176154 1 -    438239 C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204492 1 -    514179 C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203860445 1 + 204313951 T
i calJac3.chr2             C 0 I 112
s saiBol1.JH378155          16018996 1 +  16417988 t
i saiBol1.JH378155         C 0 I 113
s otoGar3.GL873745           1887320 1 -   2165740 C
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25432628 112 -  25620257 I
e cebCap1.NW_016108158v1      102975 73 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I

a score=6195160.000000
s hg38.chr5_KI270793v1_alt     80089 682 +    126136  
s panTro5.chr5             181343304 682 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183060255 682 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      149694 683 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120576546 680 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179533594 676 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181266746 676 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273021 676 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      278134 672 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90581617 678 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      176155 676 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      204493 680 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203860558 625 + 204313951  
i calJac3.chr2             I 112 C 0
s saiBol1.JH378155          16019110 665 +  16417988  
i saiBol1.JH378155         I 113 C 0
s cebCap1.NW_016108158v1      103048 669 +    298490  
i cebCap1.NW_016108158v1   I 73 I 660
s aotNan1.NW_018503740v1    25432740 666 -  25620257  
i aotNan1.NW_018503740v1   I 112 C 0
s otoGar3.GL873745           1887321 608 -   2165740  
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11726108 261 +  42124431 I

a score=615595.000000
s hg38.chr5_KI270793v1_alt     80771  92 +    126136 CCACTGTCCAGCACGTCCAGCCCCCT--------------TCTGGGCGGGAGGCTTGACACCAGCCC-TGACACACAGCAG-GCAGGT---------------------------------------------------------GAGGTGCCAGCTCCTGCATC
s panTro5.chr5             181343986  92 - 181907262 CCACTGCCCAGCACGTCCAGCCCCCT--------------TCTGGGCGGGAGGCTTGACACCAGCCC-TGACACACAGCAG-GCAGGT---------------------------------------------------------GAGGTGCCAGCTCCTGCATC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183060937  92 - 183735486 CCACTGCCCAGCACGTCCAGCCCCCT--------------TCTGGGCGGGAGGCTTGACACCAGCCC-TGACACACAGCAG-GCAGGT---------------------------------------------------------GAGGTGCCAGCTCCTGCATC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150377  92 +    698298 CCACTGCCCAGCATGTCCAGCCCCCT--------------TCTGGGCTGGAGGCATGACACCAGCCC-TGACACACAGCAG-GCAGGT---------------------------------------------------------GAGGTGCCAGCTCCTGCATC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577226  91 - 121039945 CCACTGCCCAGCACGTCCAGCCCCCT--------------TCTGGGCGGGAGGCATGACACCAGCCC-TGACACACAGCAG-GCAGGT---------------------------------------------------------GGGGCTCCAGCTCCTGCAT-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534270  91 - 180051392 CCACTGCCCCGCACCTCCAGCCCCCT--------------TCTTGGCGGGAGGCATGACACCAGCCC-TGACACACAGCAG-GCAGGT---------------------------------------------------------GGGGCGCCCGCTCCTGCAT-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267422  91 - 181584905 CCACTGCCCCGCACCTCCAGCCCCCT--------------TCTTGGCGGGAGGCATGACACCAGCCC-TGACACACAGCAG-GCAGGT---------------------------------------------------------GGGGCGCCCGCTCCTGCAT-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273697  91 -   1764207 CCACTGCCCCGCACCTCCAGCCCCCT--------------TCTTGGCGGGAGGCATGACACCAGCCC-TGACACACAGCAG-GCAGGT---------------------------------------------------------GGGGCGCCCGCTCCTGCAT-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      278806  91 -  16742782 CCACTGCCCCGCACGTCCAGCCCCCT--------------TCTTGGCGGGAGGCATGACACCAGCCC-TGACACGAAGCAG-GCAGGT---------------------------------------------------------GGGGCGCCCGCTCCTGCAT-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90582295  90 -  91010382 CCACTGCCCCACACGTCCAGCCCCCT--------------TCTTGGCGGGAGGCATGACACCAGCCC-TGACACACAGCAG-GCAGG----------------------------------------------------------GGGGCACCCGCTCCTGCAT-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      176831  91 -    438239 CCACTGCCCCGCACGTCCAGCCCCCT--------------TCTTGGCGGGAGGCATGACACCAGCCC-TGACACGCAGCAG-GCAGGT---------------------------------------------------------GGGGCGCCCGCTCCTGCAT-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205173  91 -    514179 ACACTGTCCCGCACGTCCAGCCCCCT--------------TCTTGGTGGGAGGCATGACACCAGCCC-TGACACACAGCAG-GCAGGT---------------------------------------------------------GGGGCGCCAGCTCCTGCAT-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203861183 127 + 204313951 -------------------GTCCTGT--------------TCTGGGCAGGAGG-ATGACTCTAGCCT-TGACACACAG-AG-GCAGGTAGGCACCAGCTCCTGCGTCACCCCACGGAGCCAGGGCCTCCTCACACAGAGGCAGGTGAGGCACCAGCGCCTGTGT-
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16019775  70 +  16417988 -------------------GTCCTGT--------------TCTGGGCAGGAGG-ATGACACTAGCCC-TGACACACAG-AG-GCAGGT---------------------------------------------------------GAGGCGCCAGCTCCTGCAT-
i saiBol1.JH378155         C 0 I 1
s aotNan1.NW_018503740v1    25433406  68 -  25620257 --------------------TCCTGT--------------TCTGGGCAGGAGG-ATGACACTAGTCC-TGACACACAG-AG-GCAGGT----------------------------------------------------------GGGCGCCAGCTCCTGCGT-
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1887929  96 -   2165740 CTGCTGCCTGGCATGTCCATCCCACTAATCTGGACCCTGGTTTCAGTGGTAGTCAGGACACTAGCCCAAAACAGACAGCAGAGTGAGT---------------------------------------------------------CAGGCATC------------
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      103717 660 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I

a score=440946.000000
s hg38.chr5_KI270793v1_alt     80863 42 +    126136 CCCCCCA---------------CAGAGCCAGGGCTTCCTCCAACCTGGTGCCTCAGC
s panTro5.chr5             181344078 42 - 181907262 CCCCCCA---------------CAGAGCCAGGGCTTCCTCCAACCTGGTACCTCAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061029 42 - 183735486 CCCCCCA---------------CAGAGCCAGGGCTTCCTCCAACCTGGTACCTCAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150469 42 +    698298 CCCCCCA---------------CAGAGCCAGGGCTTCCTCCAACCTGGTACCTCAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577317 42 - 121039945 CCCCCCA---------------CAAAGCCAGGGCTTCCTCCAACCTGGTGCCTCAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534361 42 - 180051392 CCTCCCA---------------CAGAGCCAGGGCTTCCTCCAACCTGGTGCCTCAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267513 42 - 181584905 CCTCCCA---------------CAGAGCCAGGGCTTCCTCCAACCTGGTGCCTCAGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273788 42 -   1764207 CCTCCCA---------------CAGAGCCAGGGCTTCCTCCAACCTGGTGCCTCAGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      278897 42 -  16742782 CCTCCCA---------------CAGAGCCAGGGCTTCCTCCAACCTGGTGCCTCAGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90582385 42 -  91010382 CCTCCCA---------------CAGAGCCAGGGCTTCCTCCAACCTGCTGCCTCAGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      176922 42 -    438239 CCTCCCA---------------CAGAGCCAGGGCTTCCTCCAACCTGGTGCCTCAGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205264 42 -    514179 GCTCTCA---------------CAGAGCCAGGGCTTCCTCCAACCTGGTACCTCAGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203861311 40 + 204313951 -CCCCCA----------------AGATCCAGGGTCTCCTCCAACCTGGTGCCTCAGC
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16019846 40 +  16417988 -CCCCCA----------------AGAGCCAGGGTCTCCTCCAACCTGGTGCCTTAGC
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1      104377 42 +    298490 CCCCCCA---------------CAGAGCCAGGGCCTCCTCCAACCTGGTGCCTCAGC
i cebCap1.NW_016108158v1   I 660 I 29
s aotNan1.NW_018503740v1    25433474 42 -  25620257 CCCCCGA---------------CAGAGCCAGGGTCTCCTCCAACCTGGTGCCTCAGC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1888025 55 -   2165740 -TTCCCAGCACAGGAGTGAGCCTAGAGCCA-GGCTGCCTCCCTCTTGACATCTCAGC
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11726108 261 +  42124431 I

a score=155640.000000
s hg38.chr5_KI270793v1_alt     80905 15 +    126136 GTCAGGCAAGCAAAG
s panTro5.chr5             181344120 15 - 181907262 CTCAGGCAAGCAAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061071 15 - 183735486 CTCAGGCAAGCAAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150511 15 +    698298 CTCAGGCAAGCAAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577359 15 - 121039945 CTCAGGAAAGCAAAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534403 15 - 180051392 CTCAGGCAAGCAAAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267555 15 - 181584905 CTCAGGCAAGCAAAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273830 15 -   1764207 CTCAGGCAAGCAAAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      278939 15 -  16742782 CTCAGGCAAGCAAAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90582427 15 -  91010382 CTCAGGCAAGCAAAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      176964 15 -    438239 CTCAGGCAAGCAAAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205306 15 -    514179 CTCAGGCAAGCAAAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203861351 15 + 204313951 CTCAGGCAAGCAAAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16019886 15 +  16417988 CTCAGGCAAGCAAAA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25433516 15 -  25620257 CTCAGGCAAGCAAAG
i aotNan1.NW_018503740v1   C 0 I 19
s otoGar3.GL873745           1888080 15 -   2165740 CTTAGGCCAGCTAAG
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      104419 29 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I

a score=20122.000000
s hg38.chr5_KI270793v1_alt     80920 3 +    126136 CAA
s panTro5.chr5             181344135 3 - 181907262 CAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061086 3 - 183735486 CAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150526 3 +    698298 CAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577374 3 - 121039945 CAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534418 3 - 180051392 CAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267570 3 - 181584905 CAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273845 3 -   1764207 CAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      278954 3 -  16742782 CAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90582442 3 -  91010382 CAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      176979 3 -    438239 CAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205321 3 -    514179 CAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203861366 3 + 204313951 TGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16019901 3 +  16417988 TAG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1888095 3 -   2165740 CAG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25433531 19 -  25620257 I
e cebCap1.NW_016108158v1      104419 29 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I

a score=8281.000000
s hg38.chr5_KI270793v1_alt     80923 1 +    126136 A
s panTro5.chr5             181344138 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061089 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150529 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577377 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534421 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267573 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273848 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      278957 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      176982 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205324 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203861369 1 + 204313951 A
i calJac3.chr2             C 0 I 1078
s saiBol1.JH378155          16019904 1 +  16417988 A
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1888098 1 -   2165740 A
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25433531 19 -  25620257 I
e cebCap1.NW_016108158v1      104419 29 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e chlSab2.chr4              90582445 0 -  91010382 C

a score=13850.000000
s hg38.chr5_KI270793v1_alt     80924 2 +    126136 GG
s panTro5.chr5             181344139 2 - 181907262 GG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061090 2 - 183735486 GG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150530 2 +    698298 GG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577378 2 - 121039945 GA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534422 2 - 180051392 GG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267574 2 - 181584905 GG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273849 2 -   1764207 GG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      278958 2 -  16742782 GG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      176983 2 -    438239 GG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205325 2 -    514179 GG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203862448 2 + 204313951 GG
i calJac3.chr2             I 1078 C 0
s saiBol1.JH378155          16019905 2 +  16417988 GA
i saiBol1.JH378155         C 0 I 1084
s otoGar3.GL873745           1888099 2 -   2165740 GA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25433531 19 -  25620257 I
e cebCap1.NW_016108158v1      104419 29 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e chlSab2.chr4              90582445 0 -  91010382 C

a score=585115.000000
s hg38.chr5_KI270793v1_alt     80926 104 +    126136 CAGCAGCAGGTGGGAGCCCCATCCCTGGCCAGC-GAGC--------CCCACAAGCTG-TGGGGTGGCCTCTCCTGCCTCAGTTATCTGGGAGCAGGGAGTGAGTGTCACAACAG
s panTro5.chr5             181344141 104 - 181907262 CAGCAGCAGGTGGGAGCCCCGTCCCCGGCCATC-GAGC--------CCCACAAGCTG-TGGGGTGGCCTCTCCTGCCTCAGTTATCTGGGAGCAGGAAGTGAGTGTCACAACAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061092 104 - 183735486 CAGCAGCAGGTGGGAGCCCCGTCCCCGGCCATC-GAGC--------CCCACAAGCTG-TGGGGTGGCCTCTCCTGCCTCAGTTATCTGGGAGCAGGAAGTGAGTGTCACAACAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150532 104 +    698298 CAGCAGCAGGTGGGAGCCCCGTCCCCGGCCAGC-GAGC--------CCCACAGGCTG-TGGGGTGGCCTCTCCTGCCTCAGTTATCTGGGAGCAGGAAGTGAGTGTCATAACAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577380 102 - 121039945 CAGCAGCAGGTGGGAA-CCCGTCCCCAGCCATT-GAGC--------CCCACA-GCTG-TGGGGTGGCCTCTCCTGCCTCAGTTATCTGAGAGCAGGAAGTGAGTGTCACAACAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534424 102 - 180051392 CAGCAGCAGGTGGGAACCCCGTTCCTGGCCATC-GAGC--------CCCACAAGCTG-TGGGGTAACCTCTTCTGTCT--GTTATCTGGGAGCAGGAAGGGAGCGTCACAACAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267576 102 - 181584905 CAGCAGCAGGTGGGAACCCCGTTCCTGGCCATC-GAGC--------CCCACAAGCTG-TGGGGTAACCTCTTCTGTCT--GTTATCTGGGAGCAGGAAGGGAGCGTCACAACAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273851 102 -   1764207 CAGCAGCAGGTGGGAACCCCGTTCCTGGCCATC-GAGC--------CCCACAAGCTG-TGGGGTAGCCTCTCCTGTCT--GTTATCTGGGAGCAGGAAGGGAGTGTCACAACAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      278960 104 -  16742782 CAGCAGCAGGTGGGAGCCCCATTCCTGGCCATC-GAGT--------CCCACAAGCTG-TGGGGTAGCCTCTCCTGTCTCAGTTATCTGGGAGCAGGAAGGGAGTGTCACAACAG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      176985 102 -    438239 CAGCAGCAGGTGGGAACCCCGTTCCTGGCCATC-GAGC--------CCCACAGGCTG-TGGGATAGCCTCTCCTGTCT--GTTATCTGGGAGCAGGAAGGGAGTGTCACAACAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205327 112 -    514179 CAGCAGCAGGTGGGAACCCCGTTCCTGGCCATC-GAGCCCCACAAACCCACAAACTG-TGGGGTAGCCTCTCCTGTCTCAGTTATCTGGGAGCAGGTAGGGAGTGTCACAACAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203862450 104 + 204313951 CAGCAGCCGGTAGGACCCCTGTTCC-GGCCACCTGAGC--------CCCACAAGCTG-TGGCACAGCCTCTTCTGCCTCAGTTATTCGGGAGCAGGAAGTGCGTGTTGCAGCAG
i calJac3.chr2             C 0 T 1142
s saiBol1.JH378155          16020991 104 +  16417988 CAGCAGCCGGTGGGACCCCTGTTCC-AGCCATCTGAGC--------CCCACAAGCTG-TGGCCTGACCTCTTCTGCCTCAGTTATCTGGGAGCAGGAAGTGGGTGTTGCAGCAG
i saiBol1.JH378155         I 1084 T 1136
s otoGar3.GL873745           1888101  61 -   2165740 ----AGC---------CTCTGTCTC-------C-CTGC--------CCCCCGACTTGCTGAGCCAGCAGC--------------TCTGGAACATGGCAGTGTGT----------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25433531  19 -  25620257 I
e cebCap1.NW_016108158v1      104419  29 +    298490 I
e canFam3.chr34             11726108 261 +  42124431 I
e chlSab2.chr4              90582445   0 -  91010382 C

a score=37015.000000
s hg38.chr5_KI270793v1_alt     81030 7 +    126136 CCTTGCA
s panTro5.chr5             181344245 7 - 181907262 CCTTGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061196 7 - 183735486 CCTTGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150636 7 +    698298 CCTTGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577482 7 - 121039945 CCTTGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534526 7 - 180051392 CCTTGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267678 7 - 181584905 CCTTGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273953 7 -   1764207 CCTTGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      279064 7 -  16742782 CCTTGCA
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      177087 7 -    438239 CCTTGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205439 7 -    514179 CCTTGCA
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25433531 19 -  25620257 I
e otoGar3.GL873745           1888162 0 -   2165740 C
e cebCap1.NW_016108158v1      104419 29 +    298490 I
e saiBol1.JH378155          16021095 1136 +  16417988 T
e calJac3.chr2             203862554 1142 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e chlSab2.chr4              90582445 0 -  91010382 C

a score=31218.000000
s hg38.chr5_KI270793v1_alt     81037 5 +    126136 TTGGA
s panTro5.chr5             181344252 5 - 181907262 TTGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061203 5 - 183735486 TTGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150643 5 +    698298 TTGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577489 5 - 121039945 TTGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534533 5 - 180051392 TTGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267685 5 - 181584905 TTGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273960 5 -   1764207 TTGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      279071 5 -  16742782 TTGGA
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      177094 5 -    438239 TTGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205446 5 -    514179 TTGGA
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1      104448 5 +    298490 TTGGA
i cebCap1.NW_016108158v1   I 29 C 0
e aotNan1.NW_018503740v1    25433531 19 -  25620257 I
e otoGar3.GL873745           1888162 0 -   2165740 C
e saiBol1.JH378155          16021095 1136 +  16417988 T
e calJac3.chr2             203862554 1142 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e chlSab2.chr4              90582445 0 -  91010382 C

a score=51781.000000
s hg38.chr5_KI270793v1_alt     81042 8 +    126136 TTCACGGT
s panTro5.chr5             181344257 8 - 181907262 TTCACGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061208 8 - 183735486 TTCACGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150648 8 +    698298 TTCACGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577494 8 - 121039945 TTCACGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534538 8 - 180051392 TTCATGGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267690 8 - 181584905 TTCATGGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273965 8 -   1764207 TTCATGGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      279076 8 -  16742782 TTCATGGT
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      177099 8 -    438239 TTCATGGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205451 8 -    514179 TTCATAGT
i colAng1.NW_012118799v1   C 0 C 0
s cebCap1.NW_016108158v1      104453 8 +    298490 TTCACGGT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25433550 8 -  25620257 TTCATGGT
i aotNan1.NW_018503740v1   I 19 C 0
s otoGar3.GL873745           1888162 5 -   2165740 ---AGGGG
i otoGar3.GL873745         C 0 C 0
e saiBol1.JH378155          16021095 1136 +  16417988 T
e calJac3.chr2             203862554 1142 + 204313951 T
e canFam3.chr34             11726108 261 +  42124431 I
e chlSab2.chr4              90582445 0 -  91010382 C

a score=183609.000000
s hg38.chr5_KI270793v1_alt     81050 31 +    126136 GGCAGGTGGCCCAGGGGTGGGCCGGTGTGGG
s panTro5.chr5             181344265 31 - 181907262 GGCGGGTGGCCCAGGGGTGGGCCAGTGTGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061216 31 - 183735486 GGCGGGTGGCCCAGGGGTGGGCCAGTGTGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150656 31 +    698298 GGCAGGTGGCCCAGGGGTGGGCTGGTGTGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577502 31 - 121039945 GGCAGGTGGCCCAGGGGTGGGCCGGTGTGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534546 31 - 180051392 GGCAGGTGGTCCAGGGGTGGGCCGGTGTGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267698 31 - 181584905 GGCAGGTGGTCCAGGGGTGGGCCGGTGTGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      273973 31 -   1764207 GGCAGGTGGTCCAGGGGTGGGCCGGTGTGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      279084 30 -  16742782 GGCAGGTGGTCCAGGGGTGGG-CGGTGTGGG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      177107 31 -    438239 GGCAGGTGGTCCAGGGGTGGGCCGGTGTGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205459 31 -    514179 GGCAGGTGGTCCAGGGGTGGGCCGCCGTGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203861412 12 + 204313951 -------------------GGCAGGTGCAGG
i calJac3.chr2             T 1142 I 4
s cebCap1.NW_016108158v1      104461 31 +    298490 GACAGGTGGCCCAGCAGTGGGCAGGTGCAGC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25433558 31 -  25620257 GGCAGGTGGCCCAGCAGTGGGCAGGTGTAGG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1888167  9 -   2165740 ---AGCAGGTCC-------------------
i otoGar3.GL873745         C 0 C 0
e saiBol1.JH378155          16021095 1136 +  16417988 T
e canFam3.chr34             11726108 261 +  42124431 I
e chlSab2.chr4              90582445  0 -  91010382 C

a score=359228.000000
s hg38.chr5_KI270793v1_alt     81081 46 +    126136 AGGGTTGTCCTGGGCAGACCACACCCAAGGTCATGGGCCTGGCTGC
s panTro5.chr5             181344296 46 - 181907262 AGGGTTGTCCTGGGCAGACCACACCCAAGGTCATGGGCCCGGCTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061247 46 - 183735486 AGGGTTGTCCTGGGCAGACCACACCCAAGGTCATGGGCCCGGCTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150687 46 +    698298 AGGGTTGTCCTGGGCAGACCACACCCAAGGTCGTGGGCCCGGCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577533 45 - 121039945 AGGGTTGTCCT-GACAGACCACGCCCAAAGTCATGGGCCCGGCTGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534577 44 - 180051392 AGGGTTGTCCTGGACAGACCACACC--AGGTCGTGGGCCTGGCTGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267729 44 - 181584905 AGGGTTGTCCTGGACAGACCACACC--AGGTCGTGGGCCTGGCTGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      274004 44 -   1764207 AGGGTTGTCCTGGACAGACCACACC--AGGTCGTGGGCCTGGCTGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      279114 46 -  16742782 AGTGTTGTCCTGGACAGACCACACCCAAGGTCGTGGGCCTGGCTGC
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      177138 46 -    438239 AGGGTTGTCCTGGACAGACCACACCCAAGGTCGTGGGCCTGGCTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205490 46 -    514179 AGGGTTGTCCTGGACAGACCACACCCAAGGTCGTGGGCCTGGCTGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203861428 42 + 204313951 ----TCACCCTGGACAGGCCACTCCCAAGGCTGTGGGCCTATCTGC
i calJac3.chr2             I 4 C 0
s saiBol1.JH378155          16019959 46 +  16417988 AGGGTCATCCTGGATAGGCCACTCCCAAGGCTGTGGGCTTATCTGC
i saiBol1.JH378155         T 1136 C 0
s cebCap1.NW_016108158v1      104492 46 +    298490 AGGATCATACTGGACAGGCCACCCCCAAGGCTGTGGGCTTATCTGC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25433589 46 -  25620257 AGACTCATCCTGGACAGGCCACTCTCAAGGCTGTGGGCTTATCTGC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1888176 45 -   2165740 AGAGTCATCCTGGCCAGGCCCCTTCTGAGGCCAT-GGTCTGGCCAC
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11726108 261 +  42124431 I
e chlSab2.chr4              90582445  0 -  91010382 C

a score=865407.000000
s hg38.chr5_KI270793v1_alt     81127 123 +    126136 CTG-GC-----------------------CCCTGT-GGCCCTGAC--CATCTCCCGTGCCAAGACTCCCAGCGA--AGGGGCAGTGGACCCAGGTCTGCAGCTTCTGAGGGCTGCACAGT-TCG----TACCCCCAGCCCCACCCTACCTGGACAGG
s panTro5.chr5             181344342 123 - 181907262 CTG-GC-----------------------CCCTGT-GGCCCTGAC--CATCTCCCATGCCAAGACTCCCAGCGA--GGGAGCAGTGGACCCAGGTCTGCAGCTTCTGAGGGCTGCACAGT-TCG----TACCCCCAGCCCCACCCTACCTGGACAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061293 123 - 183735486 CTG-GC-----------------------CCCTGT-GGCCCTGAC--CATCTCCCATGCCAAGACTCCCAGCGA--GGGAGCAGTGGACCCAGGTCTGCAGCTTCTGAGGGCTGCACAGT-TCG----TACCCCCAGCCCCACCCTACCTGGACAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150733 123 +    698298 CTG-GC-----------------------CCCTGT-GGCCCTGAC--CATCTCCTGTGCCAAGACTCCCAGCGA--GGGGGCAGTGGACCCAGGTCTGCAGCTTCTGAGGGCTGCACAGT-TCG----TACCCCCAGCCCCACCCTACCTGGACAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577578 121 - 121039945 CTG-GC-----------------------CCCTATGGGCCCTGTC--CATCT---GTGCCAAGACCCCCAGCGA--GGGGGCAGAGGACCCCGTTAAGCGGCTT---GGGATGGTATAAT-TCATTTCTACCTTAAGCCCCACATTACATGT-CAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534621 146 - 180051392 CTG-GACCCTGTGGCCCTGCCCGCCTGGCCCCTGT-GGCCCTGCC--CATCTCCTGTGCCAAGACCCCCAGAGA--GGGGGCCGTGGACTCAGGTCTGCGGCTTCTGAGGGCTGCACAGT-TTG----CACCCCCAGCCCCACCCTACCTGGACAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267773 146 - 181584905 CTG-GCCCCTGTGGCCCTGCCCGCCTGGCCCCTGT-GGCCCTGCC--CATCTCCTGTGCCAAGACCCCCAGAGA--GGGGGCCGTGGACTCAGGTCTGCGGCTTCTGAGGGCTGCACAGT-TTG----CACCCCCAGCCCCACCCTACCTGGACAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      274048 146 -   1764207 CTG-GACCCTGTGGCCCTGCCCGCCTGGCCCCTGT-GGCCCTGCC--CATCTCCTGTGCCAAGACCCCCAGAGA--GGGGGCCGTGGACTCAGGTCTGCGGCTTCTGAGGGCTGCACAGT-TTG----CACCCCCAGCCCCACCCTACCTGGACAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      279160 125 -  16742782 CTG-GA-----------------------CCCTGT-GGCCCTGCC--CATCTCCTGTGCCAAGACCCCCAGAGAGGGGGGGCCGTGGACTCAGGTCTGCGGCTTCTGAGGGCTGCACAGT-TTG----CACCCCCAGCCCCACCCTACCTGGACAGG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      177184 148 -    438239 CTG-GACCCTGTGGCCCTGCCCGCCTGGCCCCTGT-GGCCCTGCC--CATCTCCTGTGCCAAGACCCCCAGAGAGGGGGGGCCGTGGACTCAGGTCTGCGGCTTCTGAGGGCTGCACAGT-TTG----CACCCCCAGCCCCACCCTACCTGGACAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205536 123 -    514179 CTG-GC-----------------------CCCTGT-GGCCCTGCC--CATCTCCTGTGCCAAAACCCCCAGAGA--GGGGGCAGTGGACTCAGGTCTGCAGCTTCTGAGGACTGCACAGT-TTG----CACCCCCAGCCCCACGCTATCTGGACAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203861470 121 + 204313951 CTG-GC-----------------------CCCTGT-GGCCCTGCC--CATCTACTGGGCCAAGA-CCCTAGA-A--TAGGTCAGTGGACCTAGGTCCGTGGCTTCTGAGGGCTGCATGGT-TGG----CACCCCCAGCCCCACCCTAGCTGGACGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16020005 122 +  16417988 CTG-GC-----------------------CCCTCT-AGTCCTGCC--CATCTCCGGGGCCAAGACCCCCAGA-A--CAGGTCAGTGGACCCAGGTCTGCAGTTTCTGAGGGCTGCACAGT-TGG----CACCCTCAGCCCCACCCTAGCTGGACAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      104538 120 +    298490 TTG-GG-----------------------CCCTGT-GGCCCTGCC--CATCTCCTGGGCCAAGA-CCCTAGA-A--CAGGTCAGTGGACCCAGGTCTGCGGCTTCTGAGGGCTGCGCAG--TGG----CACCCCCAGCCCCACCCTAGGTGGATAGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25433635 122 -  25620257 CTG-GC-----------------------CCCTGT-GGCCCTGCC--CATCTCCTGGGCCAAGACCCCCAGA-A--CAGGTCAGTGGACCCAGGTCTGCAGCTTCTGAGGACTGCACAGT-TGG----CGCCCCCAGCCCCACCCTAGCGGGACAGG
i aotNan1.NW_018503740v1   C 0 M 950
s otoGar3.GL873745           1888221 109 -   2165740 ATGTGT-----------------------TTCTGT-GGCCCTTCT--CGTC-CCTAGGCTA--ATTCCCACC-T--GGGCACCATGAGCCCTGCTC-ATGGCTTCCAAG--TCACATGGT--------TACACCTGCCCTCTCCC-----AGACAAG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11726369 116 +  42124431 CTG-AC-----------------------CCCTCT-GACCACTCCAACAGCTGCTAGGCCAAGCTGCCTGTGGG--AGGGGTGATAGGGATA---CTGCTGGTCCCC----CCTCACAGTACAG----GGACCCCTGGGCCATCCTG---GGATAGC
i canFam3.chr34            I 261 C 0
e chlSab2.chr4              90582445   0 -  91010382 C

a score=717723.000000
s hg38.chr5_KI270793v1_alt     81250 106 +    126136 CTGCAGCCCACTGGGTCTCTAGGAG-GGGGCGGGCCTGCGATGAGGGTCCAGGGAAG---------AGCCATCCTTGGGCAGCT---GCTCCTGAGGCCCCGGCACTGCCCTCGGTGCC-----------
s panTro5.chr5             181344465 106 - 181907262 CTGCAGCCCACTGGGTCTCTAGGAG-GGGGCTGGCCTGCGATGAGGGTCCAGGGAAG---------AGCCATCCTTGGGCAGCT---GCTCCTGAGGCCCCGGCACTGCCCTCGGTGCC-----------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061416 106 - 183735486 CTGCAGCCCACTGGGTCTCTAGGAG-GGGGCTGGCCTGCGATGAGGGTCCAGGGAAG---------AGCCATCCTTGGGCAGCT---GCTCCTGAGGCCCCGGCACTGCCCTCGGTGCC-----------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150856 106 +    698298 CTGCAGCCCACTGGGTCTCTAGGAG-GGGGCGGGCCTGTGATGAGGGTCCAGGGAAG---------AGCCATCCTTGGGCAGCT---GCTGCTGAGGCCCTGGCACTGCCCTCGGTGCC-----------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577699 104 - 121039945 ATGCAGTCCAAAAGGTCTTTC-GAG-GGGGCTGGCAT-CGATGAGGGTCCAGGAAAG---------AGCCATCTTTGGGCAGCT---GCTCCTGAGGCCCCGGGGCTGCCCTCGGTGCC-----------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534767 106 - 180051392 CTGCAGCCCACTGGGTCTCTAGGAGCGGGGCTGGCCTGCTATGAGGGTCCAGGA-AG---------AGTCATCCTTGGGCAGCT---GCTCCTGAGGCCCCGGTGCTGCCCTCGGTGCC-----------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181267919 106 - 181584905 CTGCAGCCCACTGGGTCTCTAGGAGCGGGGCTGGCCTGCTATGAGGGTCCAGGA-AG---------AGTCATCCTTGGGCAGCT---GCTCCTGAGGCCCCGGTGCTGCCCTCGGTGCC-----------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      274194 106 -   1764207 CTGCAGCCCACTGGGTCTCTAGGAGCGGGGCTGGCCTGCTATGAGGGTCCAGGA-AG---------AGTCATCCTTGGGCAGCT---GCTCCTGAGGCCCCGGTGCTGCCCTCGGTGCC-----------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      279285 106 -  16742782 CTGCAGCCCACTGGGTCTCTAGGAGCGGGGCTGGCCTGCGATGAGGGTCCCCGA-AG---------AGTCATCCTCGGGCAGCT---ACTCCTGAGGCCCCGGTGCTGCCCTCGGTGCC-----------
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      177332 105 -    438239 CTGCAGCCCACTGGGTCTCTAGGAG-GGGGCTGGCCTGCGATGAGGGTCCCCAA-AG---------AGTCATTCTCGGGCAGCT---GCTCCTGAGGCCCCGGTGCTGCCCTCGGTGCC-----------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205659 104 -    514179 CTGCAGC---CTGGGTCTCTAGGAGGGGGGCTGGCCTGCGATGAGGGTCCAGGACAG---------AGCCATCTTTGGGCAGCT---GCTCCTGAGGCCCTGGTGCTGCCCTCAGTGCC-----------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203861591 102 + 204313951 CTGCAGCCCACTAGATCCCAGGAG---GGGCTGGCCTGCAA-GAGGGTCCCGAAAGG---------AGCCATC-TTGGGCAGCT---GCTCCCGAGACCCTGGCGCTGCCCTCAGTGCC-----------
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16020127 105 +  16417988 CTGCAGCCCACTAGGTCCCAAGGAG-CGGGCTGGCCTGCAATGAGGGTCCAGGAAGG---------AACCATC-TTGGGCAGCT---GCTCCTGAGGCCCCGGCGCTGCCCTCAGGGCC-----------
i saiBol1.JH378155         C 0 I 6
s cebCap1.NW_016108158v1      104658 104 +    298490 CTGCAGCCCACTAGGTCCCAGGGAG--GGGCTGGCCTGCAATGAGGGTCCAGGAAGG---------AGCCATC-TTTGGCAGCT---GCTCCCGAGGCCCCGGCACTGCCCTCAGTGCC-----------
i cebCap1.NW_016108158v1   C 0 I 675
s otoGar3.GL873745           1888330 115 -   2165740 CCATACTCC-CTATGTCCCCAGGAG--GGACTGGCCTGTCATGCAGGTCCAGGAAAGGAATCTACTGGCCACC-TGAGATAGGTCTGGATCCTGGAGCATTGGGCTTGACCTCTGAGCT-----------
i otoGar3.GL873745         C 0 I 49
s canFam3.chr34             11726485  93 +  42124431 CTGCACCCTGCTGGGCCCC---------------------ATGAAGGTCCAGGAGAG---------AGCCAGTCCAGGGCTGCC---CTTCCTG----CCTGGCCAGGTCCCTCCTACTAGCCATCGACC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25433757 950 -  25620257 M
e chlSab2.chr4              90582445   0 -  91010382 C

a score=173037.000000
s hg38.chr5_KI270793v1_alt     81356 32 +    126136 ----------CCCAG------------CACTCACCCTCTCCACTGCCC--AGTCAG-
s panTro5.chr5             181344571 32 - 181907262 ----------CCCAG------------TACTCAGCCTCTCCACTGCCC--AGTCAG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061522 32 - 183735486 ----------CCCAG------------CACTCAGCCTCTCCACTGCCC--AGTCAG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150962 32 +    698298 ----------CCCAG------------CACTCAGCCTCTCCACTGCCC--AGTCAG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577803 32 - 121039945 ----------CCCAG------------CACTCAGCCTCTCCAGTGCCC--AGGTGG-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534873 32 - 180051392 ----------CCCAG------------TACTCATCCTGTCCACTGCCC--GGTCAG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181268025 32 - 181584905 ----------CCCAG------------TACTCATCCTGTCCACTGCCC--GGTCAG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      274300 32 -   1764207 ----------CCCAG------------TACTCATCCTGTCCACTGCCC--GGTCAG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      279391 32 -  16742782 ----------CCCAG------------TACTCATCCTGTCCACTGCCC--GGTCAG-
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      177437 32 -    438239 ----------CCCAG------------TACTCATCCTGTCCACTGCCC--GGTCAG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      205763 32 -    514179 ----------CCCAG------------TACTCATCCTGTCCACTGCCC--GGTCAG-
i colAng1.NW_012118799v1   C 0 I 181
s calJac3.chr2             203861694 32 + 204313951 ----------CCGCA------------CACTCAGCCTCTCCACTGGCC--AGTCAG-
i calJac3.chr2             I 1 I 34
s saiBol1.JH378155          16020238 32 +  16417988 ----------CCCCG------------CACTCAGCCTCTGCAATGGCC--AGTCAG-
i saiBol1.JH378155         I 6 I 34
s otoGar3.GL873745           1888494 44 -   2165740 ----------CCCAGCCAGCCAGAGCCCACACTTCCCCATCACTGACA--GACTTG-
i otoGar3.GL873745         I 49 I 18
s canFam3.chr34             11726578 45 +  42124431 ACCAGTGGTTCTGGG------------TTCAGACCCTGTGGGCTGCCTCGAGGTAGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25433757 950 -  25620257 M
e cebCap1.NW_016108158v1      104762 675 +    298490 I
e chlSab2.chr4              90582445  0 -  91010382 C

a score=16595.000000
s hg38.chr5_KI270793v1_alt     81388 3 +    126136 CCT
s panTro5.chr5             181344603 3 - 181907262 CCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061554 3 - 183735486 CCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150994 3 +    698298 CCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577835 3 - 121039945 GCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534905 3 - 180051392 CCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181268057 3 - 181584905 CCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      274332 3 -   1764207 CCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      279423 3 -  16742782 CCC
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      177469 3 -    438239 CCC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203861760 3 + 204313951 CCT
i calJac3.chr2             I 34 C 0
s saiBol1.JH378155          16020304 3 +  16417988 CCT
i saiBol1.JH378155         I 34 C 0
s otoGar3.GL873745           1888556 3 -   2165740 CCT
i otoGar3.GL873745         I 18 C 0
s canFam3.chr34             11726623 3 +  42124431 TCT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25433757 950 -  25620257 M
e cebCap1.NW_016108158v1      104762 675 +    298490 I
e chlSab2.chr4              90582445 0 -  91010382 C
e colAng1.NW_012118799v1      205795 181 -    514179 I

a score=384137.000000
s hg38.chr5_KI270793v1_alt     81391  72 +    126136 GG--------CAGCCA-------T--------TGTCTAGGCC--------------TCCAG--GCTACAGCCCCCACT-------------------------TTGAAGC-------------------AACTCTG---------------------------------------------AC------------------TCCAAAGTGGCACGCCT----
s panTro5.chr5             181344606  72 - 181907262 GG--------CAGCCA-------T--------TGTCTAGGCC--------------TCCAG--GCTACAGCCCCCACT-------------------------TTGAAGC-------------------AACTCTG---------------------------------------------AC------------------TCCAAAGTGGCACGCCT----
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183061557  72 - 183735486 GG--------CAGCCA-------T--------TGTCTAGGCC--------------TCCAG--GCTACAGCCCCCACT-------------------------TTGAAGC-------------------AACTCTG---------------------------------------------AC------------------TCCAAAGTGGCACGCCT----
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      150997  72 +    698298 GG--------CAGCCA-------T--------TGTCTAGGCC--------------TCCAG--GCTACAGCCCCCACT-------------------------TTGAAGC-------------------AACTCTG---------------------------------------------AC------------------TCCAAAGTGGCATGCCT----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577838  72 - 121039945 GG--------CAGCTA-------T--------TGTCTAGGCC--------------TCCAG--GCTACAGCTCCCACT-------------------------TTGAAGC-------------------AACTCTG---------------------------------------------AC------------------TCCAGAGAGGCACACCT----
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179534908  72 - 180051392 GG--------CAGCCA-------T--------CATCTAGGCC--------------TCCAG--GCTGCGGCCCCCACT-------------------------TTGAAGC-------------------AACTCTG---------------------------------------------AC------------------TCCAGAGCAGCACGCCT----
i rheMac8.chr6             C 0 I 552
s macFas5.chr6             181268060  72 - 181584905 GG--------CAGCCA-------T--------CATCTAGGCC--------------TCCAG--GCTGCGGCCCCCACT-------------------------TTGAAGC-------------------AACTCTG---------------------------------------------AC------------------TCCAGAGCAGCACGCCT----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      274335  72 -   1764207 GG--------CAGCCA-------T--------CATCTAGGCC--------------TCCAG--GCTGCGGCCCCCACT-------------------------TTGAAGC-------------------AACTCTG---------------------------------------------AC------------------TCCAGAGCAGCACGCCT----
i macNem1.NW_012012389v1   C 0 I 552
s cerAty1.NW_012009470v1      279426  72 -  16742782 GG--------CAGCCA-------T--------CATCTAGGCC--------------TCCAG--GCTGCGGCCCCCACT-------------------------TTGAAGC-------------------AACTCTG---------------------------------------------AC------------------TCCAGAGCAGCACGCCT----
i cerAty1.NW_012009470v1   C 0 I 630
s manLeu1.NW_012110441v1      177472  72 -    438239 GG--------CAGCCA-------T--------CATCTAGGCC--------------TCCAG--GCTGCGGCCCCCACT-------------------------TTGAAGC-------------------AACTCTG---------------------------------------------AC------------------TCCAGAGCAGCACGCCT----
i manLeu1.NW_012110441v1   C 0 I 551
s colAng1.NW_012118799v1      205976  72 -    514179 GG--------CAGCCA-------T--------TGTCTAGGCC--------------TCCAG--GCTGCAGCCCCCACA-------------------------TTGAAGC-------------------AACTCTC---------------------------------------------AC------------------TCCAGAGCAGCACGCCT----
i colAng1.NW_012118799v1   I 181 I 578
s calJac3.chr2             203861763  63 + 204313951 GG--------CAGCCA-------T--------TGTCTGGGCC--------------TCCAG--G---------CCACT-------------------------TTGAGGT-------------------GACTCTG---------------------------------------------AC------------------TCCAGAGCTATATGCCT----
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16020307  63 +  16417988 GG--------CAGCCA-------T--------TGTCTAGGCC--------------TCTAG--A---------CCACG-------------------------TTGAGGT-------------------GACTCTG---------------------------------------------AC------------------TCCAGAGCAACACGCCT----
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1888559 166 -   2165740 GGTCCCTTCCCAGCCT-------TGGTGCAGCTACATGGGCCGCTGGACAGGACATTCCAG--CCAGCACCCTCCACTG---------------------AGCCTGGGGCTATGGTCCCTGCTGCCAGAAACCCTGGAGCAGTAATTTAAACGTTCAGTCTCATGAAGTGCTCAAAGCCCCAC------------------TTGAGGGCAGCTC--------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11726626 128 +  42124431 GA--------CCCCCAGGACCACT--------CGGCTAGACG--------------TCCAGCAGCCACAGCCCACACTTGCTGCCTTTGCTGGTGATGGCAGTTTGGAGC-------------------AGCCTTG---------------------------------------------ACCTTGAGCCCCTGACTGAGCCCAGGGTAAGAGGCTGACCC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25433757 950 -  25620257 M
e cebCap1.NW_016108158v1      104762 675 +    298490 I
e chlSab2.chr4              90582445   0 -  91010382 C

a score=17269.000000
s hg38.chr5_KI270793v1_alt     81463 6 +    126136 TGTCCC
s panTro5.chr5             181344678 6 - 181907262 TGTCCC
i panTro5.chr5             C 0 I 568
s panPan2.chr5             183061629 6 - 183735486 TGTCCC
i panPan2.chr5             C 0 I 574
s gorGor5.CYUI01015805v1      151069 6 +    698298 TGTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120577910 6 - 121039945 TCTCCC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181268132 6 - 181584905 GGTTCC
i macFas5.chr6             C 0 I 546
s calJac3.chr2             203861826 6 + 204313951 TGTCCC
i calJac3.chr2             C 0 I 519
s saiBol1.JH378155          16020370 6 +  16417988 TGTCCC
i saiBol1.JH378155         C 0 I 515
s otoGar3.GL873745           1888725 6 -   2165740 TCTCCC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11726754 6 +  42124431 CTTCCC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25433757 950 -  25620257 M
e cebCap1.NW_016108158v1      104762 675 +    298490 I
e manLeu1.NW_012110441v1      177544 551 -    438239 I
e chlSab2.chr4              90582445 0 -  91010382 C
e cerAty1.NW_012009470v1      279498 630 -  16742782 I
e colAng1.NW_012118799v1      206048 578 -    514179 I
e macNem1.NW_012012389v1      274407 552 -   1764207 I
e rheMac8.chr6             179534980 552 - 180051392 I

a score=-1660.000000
s hg38.chr5_KI270793v1_alt     81469 1 +    126136 -T
s gorGor5.CYUI01015805v1      151075 1 +    698298 -T
i gorGor5.CYUI01015805v1   C 0 I 566
s nomLeu3.chr6             120577916 1 - 121039945 -T
i nomLeu3.chr6             C 0 I 524
s otoGar3.GL873745           1888731 1 -   2165740 -C
i otoGar3.GL873745         C 0 I 5
s canFam3.chr34             11726760 1 +  42124431 A-
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181344684 568 - 181907262 I
e aotNan1.NW_018503740v1    25433757 950 -  25620257 M
e cebCap1.NW_016108158v1      104762 675 +    298490 I
e saiBol1.JH378155          16020376 515 +  16417988 I
e calJac3.chr2             203861832 519 + 204313951 I
e manLeu1.NW_012110441v1      177544 551 -    438239 I
e chlSab2.chr4              90582445 0 -  91010382 C
e cerAty1.NW_012009470v1      279498 630 -  16742782 I
e colAng1.NW_012118799v1      206048 578 -    514179 I
e macNem1.NW_012012389v1      274407 552 -   1764207 I
e macFas5.chr6             181268138 546 - 181584905 I
e rheMac8.chr6             179534980 552 - 180051392 I
e panPan2.chr5             183061635 574 - 183735486 I

a score=7132.000000
s hg38.chr5_KI270793v1_alt     81470 25 +    126136 -----------------------------------TGTTTAAAACT---TGGACTC--------------------------AGAGGGG
s panTro5.chr5                561986 25 + 181907262 -----------------------------------TGTTTAAAACT---TGGACTC--------------------------AGAGGGG
i panTro5.chr5             T 5607 C 0
s panPan2.chr5                673253 25 + 183735486 -----------------------------------TGTTTAAAACT---TGGACTC--------------------------AGAGGGG
i panPan2.chr5             T 5527 C 0
s gorGor5.CYUI01015805v1      546632 25 -    698298 -----------------------------------TGTTTAAAACT---TGGACTC--------------------------AGAGGGG
i gorGor5.CYUI01015805v1   T 6739 C 0
s otoGar3.GL873745           1888737 22 -   2165740 -----------------------------------GGTTTGAG------TGGGTCC--------------------------TGGGGGT
i otoGar3.GL873745         I 5 I 5
s canFam3.chr34             11726761 89 +  42124431 GACCCAGAGCCGTGTGAGCTGCTGGACTTGTGGTCTGCTTAGCACCCCATAGCCCCCATGCCACAGACAGTACTGATGAGAAAGAGGGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25433757 950 -  25620257 M
e cebCap1.NW_016108158v1      104762 675 +    298490 I
e saiBol1.JH378155          16020376 515 +  16417988 I
e calJac3.chr2             203861832 519 + 204313951 I
e nomLeu3.chr6             120577917 524 - 121039945 I
e manLeu1.NW_012110441v1      177544 551 -    438239 I
e chlSab2.chr4              90582445  0 -  91010382 C
e cerAty1.NW_012009470v1      279498 630 -  16742782 I
e colAng1.NW_012118799v1      206048 578 -    514179 I
e macNem1.NW_012012389v1      274407 552 -   1764207 I
e macFas5.chr6             181268138 546 - 181584905 I
e rheMac8.chr6             179534980 552 - 180051392 I

a score=6377.000000
s hg38.chr5_KI270793v1_alt     81495  29 +    126136 -----------------------------------------------------------------TGA--GGGTCC--------CTGCAGGGTGCA-----------------------------------------------------CCTGGAGA
s panTro5.chr5                562011  29 + 181907262 -----------------------------------------------------------------TGA--GGGTCC--------CTGCAGGGTGCA-----------------------------------------------------CCTGGAGA
i panTro5.chr5             C 0 n 0
s panPan2.chr5                673278  29 + 183735486 -----------------------------------------------------------------TGA--GGGTCC--------CTGCAGGGTGCA-----------------------------------------------------CCTGGAGA
i panPan2.chr5             C 0 n 0
s gorGor5.CYUI01015805v1      546657  29 -    698298 -----------------------------------------------------------------TGA--GGGTCC--------CTGCAGGGTGCA-----------------------------------------------------CCTGGAGA
i gorGor5.CYUI01015805v1   C 0 n 0
s nomLeu3.chr6             120578441  26 - 121039945 -----------------------------------------------------------------TGG--GGGTCT--------CC---AGGTGCA-----------------------------------------------------CCCTGAGG
i nomLeu3.chr6             I 524 I 10
s calJac3.chr2             203862351  26 + 204313951 -----------------------------------------------------------------TGG--GGGTCT--------CC---AGGTGTA-----------------------------------------------------CCTTGAGG
i calJac3.chr2             I 519 I 10
s saiBol1.JH378155          16020891  26 +  16417988 -----------------------------------------------------------------TGG--GGGTCT--------CC---AGGTGTA-----------------------------------------------------CCTTGAGG
i saiBol1.JH378155         I 515 I 11
s otoGar3.GL873745           1888764  81 -   2165740 -----------------------------------------------------------------TGGATGGGCCC--------TC---AGGAGCAGAGGTCCGTAATGCTGACCAGTTATCTCCCTGCCTGGCTAGGGCTCTTGGCTCTTTGGAAA
i otoGar3.GL873745         I 5 C 0
s canFam3.chr34             11726850 107 +  42124431 CCTGTCTGGTGGTTCTAATGTCTGGCCCGTGACACATTCCAACTCCTTCCTGGCTTGGCAGGTCCTAG--GGGCCTGGGATGGACCAAAGGGAGCAGCGGG------------------------------------------------CCAGGACA
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25433757 950 -  25620257 M
e cebCap1.NW_016108158v1      104762 675 +    298490 I
e manLeu1.NW_012110441v1      177544 551 -    438239 I
e chlSab2.chr4              90582445   0 -  91010382 C
e cerAty1.NW_012009470v1      279498 630 -  16742782 I
e colAng1.NW_012118799v1      206048 578 -    514179 I
e macNem1.NW_012012389v1      274407 552 -   1764207 I
e macFas5.chr6             181268138 546 - 181584905 I
e rheMac8.chr6             179534980 552 - 180051392 I

a score=389656.000000
s hg38.chr5_KI270793v1_alt     81524  60 +    126136 -----CCCTCTGAG----------TCCAAGTTTTAAACATGAGGCTTCCCAGTCC-----CCATCCT----------------------------------------------------------------------GG----TCTT--------------------------------------------------------TGGACAG
s panTro5.chr5             181345252  60 - 181907262 -----CCCTCTGAG----------TCCAAGTTTTAAACATGAGGCTTCCCAGTCC-----CCATCCT----------------------------------------------------------------------GG----TCTT--------------------------------------------------------TGGACAA
i panTro5.chr5             I 568 C 0
s panPan2.chr5             183062209  60 - 183735486 -----CCCTCTGAG----------TCCAAGTTTTAAACATGAGGCTTCCCAGTCC-----CCATCCT----------------------------------------------------------------------GG----TCTT--------------------------------------------------------TGGACAA
i panPan2.chr5             I 574 C 0
s gorGor5.CYUI01015805v1      151642  60 +    698298 -----CCCTCTGAG----------TCCAAGTTTTAAACATGAGGCTTCCCAGTCC-----CCATCCT----------------------------------------------------------------------GG----TCTT--------------------------------------------------------TGGACAA
i gorGor5.CYUI01015805v1   I 566 C 0
s nomLeu3.chr6             120578477  59 - 121039945 -----CCCTCTGAG----------TCCAAGTTTTAAACACGAGGCTT-CCAGTCC-----CCATCCT----------------------------------------------------------------------GG----TCTT--------------------------------------------------------TGGACAA
i nomLeu3.chr6             I 10 C 0
s rheMac8.chr6             179535532  59 - 180051392 -----CCCTCTGAG----------TCCAGGTTTTAAACACGAGGCTTCCCAGCCC-----CCATCCT-----------------------------------------------------------------------G----TCTT--------------------------------------------------------TGGGCAG
i rheMac8.chr6             I 552 C 0
s macFas5.chr6             181268684  59 - 181584905 -----CCCTCTGAG----------TCCAGGTTTTAAACACGAGGCTTCCCAGCCC-----CCATCCT-----------------------------------------------------------------------G----TCTT--------------------------------------------------------TGGGCAG
i macFas5.chr6             I 546 C 0
s macNem1.NW_012012389v1      274959  59 -   1764207 -----CCCTCTGAG----------TCCAGGTTTTAAACACGAGGCTTCCCAGCCC-----CCATCCT-----------------------------------------------------------------------G----TCTT--------------------------------------------------------TGGGCAG
i macNem1.NW_012012389v1   I 552 C 0
s cerAty1.NW_012009470v1      280128  59 -  16742782 -----CCCTCTGAG----------TCCAGGTTTTAAACACGAGGCTTCCCAGCCC-----CCATCCT-----------------------------------------------------------------------G----TCTT--------------------------------------------------------TGGGCAG
i cerAty1.NW_012009470v1   I 630 C 0
s manLeu1.NW_012110441v1      178095  59 -    438239 -----CCCTCTGAG----------TCCAGGTTTTAAACACGAGGCTTCCCAGCCC-----CCATCCT-----------------------------------------------------------------------G----TCTT--------------------------------------------------------TGGGCAG
i manLeu1.NW_012110441v1   I 551 C 0
s colAng1.NW_012118799v1      206626  59 -    514179 -----CCCTCTGAG----------TCCAGGTTTTAAACACGAGGCTTCCCAGCCC-----CCATCCT-----------------------------------------------------------------------G----TCTT--------------------------------------------------------TGGGCAG
i colAng1.NW_012118799v1   I 578 C 0
s calJac3.chr2             203862387  60 + 204313951 -----CCCTCTGAA----------ACCAAGTTTTAAACACGAGGCTTCCCAGCCC-----CCATCCT----------------------------------------------------------------------GG----TCTT--------------------------------------------------------TGGGCAG
i calJac3.chr2             I 10 C 0
s saiBol1.JH378155          16020928  60 +  16417988 -----CCCCCTGAA----------CCCAAGTTTTAAACACGAGGCTTCTCAGCCC-----CCATCCT----------------------------------------------------------------------GG----TCTT--------------------------------------------------------GGGGCAG
i saiBol1.JH378155         I 11 C 0
s cebCap1.NW_016108158v1      105437  60 +    298490 -----CCCTCTGAA----------CCCAAGTTTTAAACATGAGGCTTCCCAGTCC-----CCACCCT----------------------------------------------------------------------GG----TCTT--------------------------------------------------------TGGGCAG
i cebCap1.NW_016108158v1   I 675 C 0
s otoGar3.GL873745           1888845  75 -   2165740 -----CCCCATGGGGAATGTCTCCTCCACTTGTAAAGCCTG----TGCTCAGTCCTTCCTTCTACCT----------------------------------------------------------------------GGAGTTTCTC--------------------------------------------------------TGGGTTC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11726957 188 +  42124431 CTGACTCCACTGTG----------TCTCGGGGCTGCTCATG---CTTCCAGGCCC-----CCACCCTGATTGTGTCCTCCTGGCTCCTGTGAGGCCCCACCTTTAATTCTCCCTCTGCCTGGCAGGCAGGGGTTGGGGG----TCTTAGGCCCTCAGGGGCCCTGTGCTCCCCCAGGATGGGCCCACAAGTCGTCAATCTGAGTGAGCAG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25433757 950 -  25620257 M
e chlSab2.chr4              90582445   0 -  91010382 C

a score=1865311.000000
s hg38.chr5_KI270793v1_alt     81584 206 +    126136 -AGGCAGCAGCAGGT-------GGGAACCCCATTCCTGGCCA---------TTCAAGCC----CCAC---AAGCTGTGGGGTGGCCTCTCCTGCCTCAGTTA----TCCGGGAGCAGGAAGTGGGTGTCGCA----------ACAGACATAATCAGGTGTCACAAAGTCCAAGCCCTGTAATTCTGTGAACTTTATTGGTAGGAGGGGCTGTCTCCCGAGCCGCTCGCCCC-ATCCTTAACCCGG
s panTro5.chr5             181345312 206 - 181907262 -AGGCAGCAGCAGGT-------GGGAACCCCATTCCTGGCCA---------TTCAAGCC----CCAC---AAGCTGTGGGGTGGCCTCTCCTGCCTCAGTTA----TCTGGGAGCAGGAAGTGGGTGTCGCA----------ACAGACATAATCAGGTGTCACAAAGTCCAAGCCCTGTAATTCTGTGAACTTTATTGGTAGGAGGGGCTGTCTCCCGAGCCGCTCGCCCC-ATCCTTAACCCGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183062269 206 - 183735486 -AGGCAGCAGCAGGT-------GGGAACCCCATTCCTGGCCA---------TTCAAGCC----CCAC---AAGCTGTGGGGTGGCCTCTCCTGcctcagtta----tccgggagcaggaagtgggtgtcgca----------acagacataatcaggtgtcacaaagtccaagccctgtaattctgtgaactttattggtaggagggGCTGTCTCCCGAGCCGCTCGCCCC-ATCCTTAACCCGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      151702 206 +    698298 -AGGCAGCAGCAGGT-------GGGAACCCCATTCCTGGCCA---------TTCAAGCC----CCAC---AAGCTGTGGGGTGGCCTCTCCTGCCTCAGTTA----TCCGGGAGCAGGAAGTGGGTGTCGCA----------ACAGACATAATCAGGTGTCACAAAGTCCAAGCCCTGTAATTCTGTGAACTTTATTGGTAGGAGGGGCTGTCTCCCGAGCCGCTCGCCCC-ATCCTTAACCCGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120578536 206 - 121039945 -AGGCAGAAGCAGGT-------GGGAGCCCCGTTCCTGGCCA---------TTCAGGCC----CCAC---AAGCTGTGGGGTGGCCTCTCCTGCCTCAGTTA----TCCGGGAGCAGGAAGTGGGTGTCGCA----------ACAGACATAATCAGGTGTCACAAAGTCCAAGTCCTGTAATTCCATGAACTTTATTGGTAGGAGGGGCTGTCTCCCGAGCCGCTCACCCC-ATCCTTAACCCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179535591 206 - 180051392 -AGGCAGCAGCAGGT-------GGGAACCGTATTCCTGGCCA---------TTCAAGCC----CCAC---GAACCGTGGGGTGGCCTCTCCTGCCTCAGTTT----TCTGGGAGCAGGAAGTGGGTGTTGCA----------ACAGACATAATCAAGTGTCACAAAGTCCAAGCCCCATAATTCCGTGAACTTTATTGGTAGGAGGGGCTGTCTTCTGAGTCGCTCGCCCC-ATCCTTAACCCGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181268743 206 - 181584905 -AGGCAGCAGCAGGT-------GGGAACCGTATTCCTGGCCA---------TTCAAGCC----CCAC---GAACTGTGGGGTGGCCTCTTCTGCCTCAGTTT----TCTGGGAGCAGGAAGTGGGTGTTGCA----------ACAGACATAATCAAGTGTCACAAAGTCCAAGCCCCATAATTCCGTGAACTTTATTGGTAGGAGGGGCTGTCTTCCGAGTCGCTCGCCCC-ATCCTTAACCCGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      275018 206 -   1764207 -AGGCAGCAGCAGGT-------GGGAACCGTATTCCTGGCCA---------TTCAAGCC----CCAC---GAACTGTGGGGTGGCCTCTCCTGCCTCAGTTT----TCTGGGAGCAGGAAGTGGGTGTTGCA----------ACAGACATAATCAAGTGTCACAAAGTCCAAGCCCCATAATTCCGTGAACTTTATTGGTAGGAGGGGCTGTCTTCTGAGTCGCTCGCCCC-ATCCTTAACCCGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      280187 206 -  16742782 -AAGCAGCAGCAGGT-------GGGAACCCTGTTCCTGGCCA---------TTCAAGCC----CCAC---GAACTGTGGGGTGGCCTCTCCTGCCTCAGTTT----TCTGGGAGCAGGAAGTGGGTGTTGCA----------ACAGACATAATCAAGTGTCACAAAGTCCAAGCTGCATAATTCTGTGAACTTTATTGGTAGGAGGGGCTGTCTTCTGAGTCGCTCGCCCC-ATCCTTAACCCGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90582445 206 -  91010382 -AGGCAGCAGCAGGT-------GGGAACCCCGTTCCTGGCCA---------TTTAAGCC----CCAC---GAACTGTGGGGTGGCCTCTCCTGCCTCAGTTT----TCTGGGAGCAGGAAGTGGGTGTTGCA----------ACAGACATAATCAAGTGTCACAAAGTCCAAGCTGCATAATTCCGTGAACTTTATTGGTAGGAGGGGCTGTCTTCTGAGTCGCTCGCCCC-ATCCTTAACCCGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      178154 206 -    438239 -AAGCAGCAGCAGGT-------GGGAACCCTGTTCCTGGCCA---------TTCAAGCC----CCAC---GAACTGTGGGGTGGCCTCTCCTGCCTCAGTTT----TCTGGGAGCAGGAAGTGGGTGTTGCA----------ACAGACATAATCAAGTGTCACAAAGTCCAAGCCGCATAATTCTGTGAACTTTATTGGTAGGAGGGGCTGTCTTCTGAGTCGCTCGCCCC-ATCCTTAACCCGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      206685 206 -    514179 -AGGCAGCAGCAGGT-------GGGAACCCCGTTCCTGGTCA---------TTCAAGCC----CCAC---GAACTGTGGGGTGGCCTCTTCTGCCTCAGTTT----TCTGGGAACAGGAAGTGGGTGTCGCA----------ACAGACATAATCAAGTGTCACAAAGTCCAAGCCGCATAATTCCGTGAACTTTATTGGTAGGAGGGGCTGTCTTCTGAGTCGCTCGCCCC-ATCCTTAACCCGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203862447 191 + 204313951 -AGGCAGCAGCCGGT-------AGGACCCCTGTTCC-GGCCA---------CCTGAGCC----CCAC---AAGCTGTGGCACAGCCTCTTCTGCCTCAGTTA----TTCGGGAGCAGGAAGTGCGTGTTGCA----------GCAGAAGTAATCAGGTGT--CAAAGTTCAAGCCCCATAATTTCGGGCACTTTATTGATAGGAGGGG-TGTCTCCT--GCTGCTCACCCC-ATCC---------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16020988 191 +  16417988 -AGGCAGCAGCCGGT-------GGGACCCCTGTTCC-AGCCA---------TCTGAGCC----CCAC---AAGCTGTGGCCTGACCTCTTCTGCCTCAGTTA----TCTGGGAGCAGGAAGTGGGTGTTGCA----------GCAGGAGTAATCAGGTGT--CAAAGTTCAAGCCCCATAATTCCGGGAACTTTATTGGTAGAAGGGG-TGTCTCCT--GCTGCTCGCCCC-ATCC---------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      105497 191 +    298490 -AGGCAGCAGCCGGT-------GGGACCCCTGCTCT-GGCCA---------TCTGAGCC----CCAC---AAGCTGTAGCACGGCCTCTTCTACCTCAGTTA----CCCGGGAGCAGGAAGTGGGTGTTGCA----------GCAGAAGCAATCAGGTGT--CAAAGTTCAAGCCCCATAATTCCAGGAACTTTATTGGTAGGAGGGG-TGTCTCCT--GCTGCTCCCCCC-ATCC---------
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1888920 221 -   2165740 -ATCCTGTAACTGGCTGTCCAGGAGGACCCGGGACCCAAAGA---------GCCAAGCCTGTGCTAT---GA---GTGCCTTGCCCTGCCCTGCCTCAGTTA-----CTGGGAGCAGGAAGTGAGCATGGCAGGCCTGAGAGGCAGAAATAATCAGATGTCACAAAGTCCAAGCCCCGTAATTCTAAGGACTTTATTGGCAGGAGGGGCAA--CTCCAGCCCACTTGCCCC-ATCCTAAACTTGG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11727145 231 +  42124431 AGGGCAGCAGTAGGT-------GGGAACTATG-TCCTGACCACAGGGAGACTCCAAGGC----CAGCGCTGAGCTCTGAAGACACCTCTTTTGCCTTGGTTATCAATCAGgaagcaggaagtcagccccgca-ggctgagcggcagaaataatcagatgtcacaaagtccaagcc-tgtaactctgtgaactttattggcaggaggagccatctcctcatccgctcacccCTCTTCTAAAAGTGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25433757 950 -  25620257 M

a score=3629498.000000
s hg38.chr5_KI270793v1_alt     81790 354 +    126136 TTTTGGCCCCAAGTATATGGCGCCCCAGCCGAGAACAAGGCCATTCAGGGATTAAGACAGCCAAGCCTCAGTCTCCAGTCGGGTAAAGGGCAAAGGACGGCAAAAGGCCATCCGGAGACCCCAGGGCTGGCCTCATAGGGCAGGGCAGCTGGTGTTGGGGTCACA-GCC-TGGCACT-------AGCACCACTTCTGAAAAAAGCTCCCGGGTGGCATGGTCATAGGACTGCCCAATGTCAGTGCTGGGACCACACAAGGACAGGTGTGACCTCGGGGTAGACTTTCCTCCTGATAAG-CCCTGGCAGCTGCTCCAGACCCT-GCAGGGACAAGCAAAGTCACTTTCCCTGACCTCCTCTTTCCC
s panTro5.chr5             181345518 354 - 181907262 TTTTGGCCCCAAGTATATGGCGCCCCAGCCGAGAACAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTTCAATCGGGTAAAGGGCAAAGGACGGCAAGAGGCCATCCGGAGACCCCAGGGCTGGCCTCACAGGGCAGGGCAGCTGGTGTTGGGGTCAca-gcc-tggcact-------agcaccacttctgaacaaagctcctgggtggcatggtcataggaCTGCCCAATGTCAGTGCTGGGACCACACAAGGACGGGTGTGACCTCGGGGTAGACTTTCCTCCTGATAAG-CCCTGGCAGCTGCTCCAGACCCT-GCAGGGACAAGCAAAGTCACTTTCCCTGACCTCCTCTTTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183062475 354 - 183735486 TTTTGGCCCCAAGTATATGGCGCCCCAGCCGAGAACAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTTCAATCGGGTAAAGGGCAAAGGACGGCAAGAGGCCATCCGGAGACCCCAGGGCTGGCCTCACAGGGCAGGGCAGCTGGTGTTGGGGTCAca-gcc-tggcact-------agcaccacttctgaacaaagctcctgggtggcatggtcataggaCTGCCCAATGTCAGTGCTGGGACCACACAAGGACGGGTGTGACCTCGGGGTAGACTTTCCTCCTGATAAG-CCCTGGCAGCTGCTCCAGACCCT-GCAGGGACAAGCAAAGTCACTTTCCCTGACCTCCTCTTTCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      151908 354 +    698298 TTTTGGCCCCAAGTATATGGCGCCCCAGCCGAGAACAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTCCAGTCGGGTAAAGGGCAAAGGACGGCAAAAGGCCATCCGGAGACCCCAGGGCTGGCCTCACAGGGCAGGGCAGCAGGTGTTGGGGTCACA-GCC-TGGCACT-------AGCACCACTTCTGAACAAAGCTCCCGGGTGGCATGGTCATAGGACTGCCCAATGTCAGTGCTGGGACCACACAAGGACGGGTGTGACCTCGGGGTAGACTTACCTCCTGATAAG-CCCTGGCAGCTGCTCCAGACCCT-GCAGGGACAAGCAAAGTCACTTTCCCTGACCTCCTCTTTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120578742 360 - 121039945 TTTTGGCCCCAAGTATATGGCGCCCCAGCCTAGAGCAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTCCAGTCGGGTAAAGGGCAGAGGACGGCAAAAGGCCATCCACAGACCCCAGGGCTGGCCTCACAGGGCAGGGCAGCTGGCGTTGGGGTCACA-GCC-TGGTGCTTCTGAACAGCACCACTTCTGAACAAAGCTCCCGGCTGGCACGGTCATAGGACTGGCCAATGTCAGTGCTGGGACCACGC-GGGACGGGTGTGACCTCCAGGTAGACTTTCCTCCTGATAAG-CCCTGGCAGCTGCTCCAGACACC-GCAGGGACAGGCAAAGTCACTTTCCCTGACCTCCTCCTTCCC
i nomLeu3.chr6             C 0 I 202
s rheMac8.chr6             179535797 352 - 180051392 TTTTGGCCCCAAGTATATGGCGCCCCAGCCGAGAGCAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTCCAGTCGGGTAAAGGGCAGAGGACAGCAAAAGGCCATCCAGAGACCCCAGGGCTGGCCTCACAGGGCAGGGCACCTGGTGTTGGAGTCACA-GCC-TGGCGCT-------AGCACCACTTCTGAACAAAGCCCCTGGCAGGCACGGTCATAGGACTGCCCAATGTCAGTGCTGGGACCACACAAGGACAGGTGTGACCTCA-GGTAGACT--CCCCTTGATAAG-CCCTGGCAGCTGCTCCAGACCCCGGCAGGGACAGGCAAAGTCACTTTCCCTGACCTCCTCCTTCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181268949 352 - 181584905 TTTTGGCCCCAAGTATATGGCGCCCCAGCCGAGAGCAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTCCAGTCGGGTAAAGGGCAGAGGACGGCAAAAGGCCATCCAGAGACCCCAGGGCTGGCCTCACAGGGCAGGGCACCTGGTGTTGGAGTCACA-GCC-TGGCGCT-------AGCACCACTTCTGAACAAAGCCCCTGGCAGGCACGGTCATAGGACTGCCCAATGTCAGTGCTGGGACCACACAAGGACAGGTGTGACCTCA-GGTAGACT--CCCCTTGATAAG-CCCTGGCAGCTGCTCCAGACCCCGGCAGGGACAGGCAAAGTCACTTTCCCTGACCTCCTCCTTCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      275224 352 -   1764207 TTTTGGCCCCAAGTATATGGCGCCCCAGCCGAGAGCAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTCCAGTCGGGTAAAGGGCAGAGGACGGCAAAAGGCCATCCAGAGACCCCAGGGCTGGCCTCACAGGGCAGGGCAGCTGGTGTTGGAGTCACA-GCC-TGGCGCT-------AGCACCACTTCTGAACAAAGCCCCTGGCAGGCACGGTCATAGGACTGCCCAATGTCAGTGCTGGGACCACACAAGGACAGGTGTGACCTCA-GGTAGACT--CCCCTTGATAAG-CCCTAGCAGCTGCTCCAGACCCCGGCAGGGACAGGCAAAGTCACTTTCCCTGACCTCCTCCTTCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      280393 351 -  16742782 TTTTGGCCCCAAGTATATGGCGCCCCAGCCGAGAGCAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTCCAGTCGGGTAAAGGGCAGAGGACAGCAAAAGGCCATCCAGAGACCCCAGGGCTGGCCTCACAGGGCAGGGCAGCTGGTGTTGGAGTCACA-GCC-TGGCGCT-------AGCACCACTTCTGAACAAAGACCCTGGCAGGCACGGTCATAGGACTGCCCAATGTCAGTGCTGGGACCACACAAGGACGGGTGTGACCTCA-GGTAGACT--CCCCTTGATAAG-CCCTGGCAGCTGCTCCAGACCCC-GCAGGGACAGGCAAAGTCACTTTCCCTGACCTCCTCCTTCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90582651 352 -  91010382 TTTTGGCCCCAAGTATATGGCGCCCCAGCCGAGAGCAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTCCAGTCGGGTAAAGGGCAGAGGACGGCAAAAGGCCATCCGGAGACCCCAGGGCTGGCCTCACAGGGCAGGGGAGCTGGTGTTGGAGTCACA-GCC-TGGCGCT-------AGCACCACTTCTGAACAAAGCCCCTGGCTGGCACGGTCATAGGAATGCCCAATGTCAGTGCTGGGACCACACAAGGACGGGTGTGACCTCA-GGTAGATT--CCCCTTGATAAG-CCCTGGCAGCTGCTCCAGACCCCGGCAGGGACAGGCAAAGTCACTTTCCCTGACCTCCTCCTTCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      178360 352 -    438239 TTTTGGCCCCAAGTATATGGCGCCCCAGCCGAGAGCAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTCTAGTCGGGTAAAGGGCAGAGGACAGCAAAAGGCCATCCAGAGACCCCAGGGCTGGCCTCACAGGGCAGGGCAGCTGGTGTTGGAGTCACA-GCC-TGGCGCT-------AGCACCACTTCTGAACAAAGCCCCTGGCAGGCACGGTCATAGGACTGCCCAATGTCAGTGCTGGGACCGCACAAGGACGGGTGTGACCTCA-GGTAGACT--CCCCTTGATAAG-CCCTGGCAGCTGCTCCAGACCCCGGCAGGGACAGGCAAAGTCACTTTCCCTGACCTCCTCCTTCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      206891 352 -    514179 TTTTGGCCCC-AGTATATGGTGCCCCAGCCGAGAGCAAGGCCATTCAGGGATTAAGACATCCAAGCCTCAGCCTCCAGTCGGGTAAAGGGCAGAGGACGGCAAAAGGCCATCCGGAGACCCCAGGGCTGGCCTCACAGGGCAGAGCAGCTGGTGTTGGAGTCACA-GCC-TGGCGCT-------AGCACCACTTCTGAACAAAGCCCCTGGCTGGCACGGTCACAGGACTGCCCAATGTCAGTGCTGGGACCACACAAGGACGGATGTGACCTCAGGGTAGACT--CCCCTTGATAAG-CCCTGGCAGCTGCTCCAGACCCCGGCAGGGACAGGCAAAGTCACTTTCCCTGACCTCCTCCTTCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203862638 348 + 204313951 TTTTGGGCCCAAGTATATGGTGCCCCAGCCCAGAGCAAGGCCATTCAGGGATTAATACACTCAAGTCCCAGCCTCCAGTCGGGTAAAGGGCAGAGGATGGTAAAAGGCCTTCCGGAGACCCCAGGGCTGGCCTCACAGGGCAGAGCAGCCTGTGTCAGGGTCACA-GCC-TGCCACT-------AGCACCACTGCTGAACACAG-CCCCGCCTGGCACGGTTAGAGGACTGCCCAAGGTCAGTGTGGGGGC-----CAGCATGGCTGTGACCTCGGGGTGAACTT-TCCCCCGATAAG-CCCTGGCAGCTGCTCCAGACCCCGGCAGGGACAGGCAAAGTCACTTTCCCTGATCTCCTCCTTCCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16021179 349 +  16417988 TTTTGGCCCTAAGTATATGGTGCCCCAGCCCAGAGCAAGGCCATTCAGGGATTAATACATTCAAGCCCCAGTCTCCAGTCGGGTAAAGGGCAGAGGACGGTAAGAGGCCTTCCGGAGACCCCAGGGCTGGCCTCACGGGGCACAGCAGCTGGTGTCAGGGTCACC-GCC-TGGCACT-------AGCAGCACGGCTGAACACAGCCCCCGCCTGGCACAGTCATAGGACTGCCCAAGGTCAGTGCGGGGGC-----CAGCGTGGGTGTGACCTCGGCGTGGACTT-GTCCCCGATAAG-CCCTGGCAGCTGCTCCAGACCCCGGCAGGGACAGGCAAAGTCACTTTCCCTGACCTCCTCCTTCCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      105688 348 +    298490 TTTTGGCCCCAAGTATATGGTGCCCCAGCCCAGAGCAAGGCCATTCAGGGATTAATACATTCAAG-CCCAGCCTCCAGTCGGGTAAAGGACAGAGGACAGTAAAAGGCCTTCCGGAGACCCCAGGGCTGGCCTCACAGGGCGGAGCAGCTGGCGTCAGGGTCACA-GCC-TGGCGCT-------AGCACCACTGCTGAACACAGCCCCCGCCTGGCACGGTCATAGGACTGCCCAAGGTCAGTGCGGGGGC-----CAGCATGGGTGTGACCTCGGGGTGGACTT-TCCCCCGATAAG-CCCTGGCAGCTGCTCCAGACCCCGGCAGGGACAGGCGAAGTCACTTTCCCTGATCTCCTCCTTCCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25434738 352 -  25620257 TTTTGGCCCCAAGTATAAGGTGCCCCAGCCCATAGCAAGGCCATTCAGGGATTAATACATTCGAGCCCCAGCCTCCAGTCGGGTAAAGGGCAGAGGACGGTAAAAGGCCTTCCAGAGACCCCAAGGCTGGCCTCACGGGGCAGGGCAGCTGGCGTCAGGGTCACA-GCC-TGGCACC-------AGCACCACTACTGAACACAGCCCCCGCCTGGCACGGTCATAGGACTGCCCAAGGTCAGTGCGGGGGCCACA-CAGCATGGGTGTGACCTCGG-GTGGACTT-TCCCCAGATAAG-CCCTGGCAGCTGCTCCAGACCCCGGCAGGGACAGGCAAAGTCACTTTCCCTGACCTCCTCCTTCCT
i aotNan1.NW_018503740v1   M 950 C 0
s otoGar3.GL873745           1889141 305 -   2165740 TTCTGGCAGCAAGTGT-TGGTGGCCCAGCCCAGAGCGAGGGTGTCCAAGGCATAAAACATTGAGGCTGTGGCCTCCAGTGGAGTGAAGGGCAGAGGGAAGCAAGGGTCCCT-GGAAGACCCCAAGG---------------------------------GCCACA-CCCATAAGTCT-------A----CACTTTTGCATAAAGCCCC---CCAGCATA--CCCCAGTGTACCCCACGTCAGTGTTGGGGTCACACAGAGACTGG-GTAACCTCA--ATGAGCTTTCTTCCTGATAAG-CCCAGGTCCCTGCTCTGGCCCTTGGCAGGAACA----AAGTCACTTTCCTCTACCTCCTGCTTCCC
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11727376 296 +  42124431 TCTTGGCACCACATTGGTGGTGTCTCAGCCCAGAACCAGGCAGCTCAGGGCAGGAGTCATCAGAG-CTCAGCC----------GAGAGGGCAGCAGAGGGCAGAGGGC---------AGCCCTGGG------------GGCAGGGCTGAGGGTGTGGGGCTGAGACGCC-TAGCCTC-----------CCACAGCCCCACAAAGCCCCAG--TGCCAGGGTTTTGAGGTCACACAATGTCAGGGCT---------------------CAACTAAGAGGCATAATTTCCTCATGATAAGCCCCTGGCAGCTGCTCTAGGCCTTGGCCAGGACACACAAAGTCACTTCCCTCCACCTCCTCACAG--
i canFam3.chr34            C 0 C 0

a score=257617.000000
s hg38.chr5_KI270793v1_alt     82144 23 +    126136 GGGCCTTCCCAGGGCTCCCAGAG
s panTro5.chr5             181345872 23 - 181907262 GGGCCTTCCCAGGGCTCCCAGAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183062829 23 - 183735486 GGGCCTTCCCAGGGCTCCCAGAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      152262 23 +    698298 GGGCCTTCCCAGGGCTCCCAGAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120579304 23 - 121039945 GGGCCTTCCCAGGGCTCCCAGAG
i nomLeu3.chr6             I 202 C 0
s rheMac8.chr6             179536149 23 - 180051392 GGGCCTTCCCAGAACTCCCAGAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181269301 23 - 181584905 GGGCCTTCCCAGAACTCCCAGAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      275576 23 -   1764207 GGGCCTTCCCAGAACTCCCAGAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      280744 23 -  16742782 GGGCCTTCCCAGAACTCCCAGAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90583003 23 -  91010382 GGGCCTTCCCAGAACTCCCAGAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      178712 23 -    438239 GGGCCTTCCCAGAACTCCCAGAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      207243 23 -    514179 GGGCCTTCCCGGAACTCCCAGAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203862986 23 + 204313951 CAGCCTTCCCAGAGCTGCCAGAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16021528 23 +  16417988 CGGCCCTCCCAGAGCTGCCAGAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      106036 23 +    298490 CGGCCTTCCCAGAGCTGCCAGAG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25435090 23 -  25620257 CGGCCCTCCCAGAGCTGCCAGAG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1889447 23 -   2165740 GCATCTTCCCAAAGCTGCCTGAA
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11727672 23 +  42124431 GCACCTTCCCGAAGCCGCCAAAG
i canFam3.chr34            C 0 I 893

a score=1636358.000000
s hg38.chr5_KI270793v1_alt     82167 195 +    126136 -CCACCGTGACCTGTAGGGGCCAGGACAGGAGGAGAGAAAGCTTGGGGCTGGAACAGGACCTAGCCTGCAGGGTAGCAGGTGCAA--------------TCCCAGGCTTCAG-----GGCTGGTTGTGCGGGGCTCTGCCCAGCGAGTGTGGTGGGCCAGGGTG-GAGGCCCTG----CCT-----------GTGCTCCCTGCAGCCCCAGCAA-TCCCTCCTTGGACGCTG
s panTro5.chr5             181345895 195 - 181907262 -CCACCGTGACCTGTAGGGGCCAGGACAGGAGGAGAGAAAGCTTGGGGCTGGAACAGGACCTAGCCTGCAGGGTAGCAGGTGCAC--------------TCCCAGGCTTCAG-----GGCTGGTTGTGCGGGGCTCTGCCCAGCGAGTGTGGTGGGCCGGGGTG-GAGGCCCTG----CCT-----------GTGCTCCCTGCAGCCCCAGCAA-TCCCTCCTTGGACGCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183062852 195 - 183735486 -CCACCGTGACCTGTAGGGGCCAGGACAGGAGGAGAGAAAGCTTGGGGCTGGAACAGGACCTAGCCTGCAGGGTAGCAGGTGCAC--------------TCCCAGGCTTCAG-----GGCTGGTTGTGCGGGGCTCTGCCCAGCGAGTGTGGTGGGCCGGGGTG-GAGGCCCTG----CCT-----------GTGCTCCCTGCAGCCCCAGCAA-TCCCTCCTTGGACGCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      152285 195 +    698298 -CCACCGTGACCTGTAGGGGCCAGGACAGGAGGAGAGAAAGCTTGGGGCTGGAACAGGACCTAGCCTGCAGGGTAGCAGGTGCAC--------------TCCCAGGCTTCAG-----GGCTGGTTGGGCGGGGCTCTGCCCAGCGAGTGTGGTGGGCCGGGGTG-GAGGCCCTG----CCT-----------GTGCTCCCTGCAGCCCCAGCAA-TCCCTCCTTGGACGCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120579327 206 - 121039945 -CCACCGCGACCCGCAGGGTCCAGGACAGGAGGAGAGGAAGCTTGGGGCTGGAGCAGCACCTAGCCTGCAGGGTAGTAGGTGCTC--------------TCCCAGGCTTCAG-----GGCTGGTTGTGTGGGGCTCTGCCCAGCAAGTGGGGTGGGCCGGGGTG-GAGGCCCTG----CCTGTGCTCCCTGCGTGCTCCCTGCAGCCCCAGCAG-TCCCTCCTTGGGCGCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179536172 175 - 180051392 -CCACCGTGACCTGCAGGGGCCAGGACAGGAGGAGAGGAAGCTTGGGGCTGGAACAGGACCTAGCCTGCGGCGTAGCAGGCACTC--------------CCCCAGGCTCCAG-----GGCTGCTTGTGCG--------------------GGTGGGCGAGGGTG-GAGGCCCTG----CCT-----------GTGCTCCCTGCAGCCCCTGCAG-TCCCTCCTCGGACGCTG
i rheMac8.chr6             C 0 I 98
s macFas5.chr6             181269324 175 - 181584905 -CCACCGTGACCTGCAGGGGCCAGGACAGGAGGAGAGGAAGCTTGGGGCTGGAACAGGACCTAGCCTGCGGCGTAGCAGGCACTC--------------CCCCAGGCTCCAG-----GGCTGCTTGTGCG--------------------GGTGGGCGAGGGTG-GAGGCCCTG----CCT-----------GTGCTCCCTGCAGCCCCTGCAG-TCCCTCCTCGGACGCTG
i macFas5.chr6             C 0 I 98
s macNem1.NW_012012389v1      275599 175 -   1764207 -CCACCGTGACCTGCAGGGGCCAGGACAGGAGGAGAGGAAGCTTGGGGCTGGAACAGGACCTAGCCTGCGGCGTAGCAGGCACTC--------------CCCCAGGCTCCAG-----GGCTGCTTGTGCG--------------------GGTGGGCGAGGGTG-GAGGCCCTG----CCT-----------GTGCTCCCTGCAGCCCCTGCAG-TCCCTCCTCAGACGCTG
i macNem1.NW_012012389v1   C 0 I 229
s cerAty1.NW_012009470v1      280767 175 -  16742782 -CCACCGTGACCTGCAGGGGCCAGGACAGGAGGAGAGGAAGCTTGGGGCTGGAACAAGACCTAGCCTGTGGGGTAGCAGGCACTC--------------CCCCAGGCTCCAG-----GGCTGCTTGTGCG--------------------GGTGGGCGAGGGTG-GAGGCCCTG----CCT-----------GTGCTCCCTGCAGCCCCTGCAG-TCCCTCCTCGGACGCTG
i cerAty1.NW_012009470v1   C 0 I 200
s chlSab2.chr4              90583026 175 -  91010382 -CCACCGTGACCTGCAGGGGCCAGGACAGGAGGAGAGGAAGCTTGGGGCTGGAACAGGACCTAGCCTGTGGGGTAGCAGGCACTC--------------TCCCAGGCTCCAG-----GGCTGCTTGTGCG--------------------GGTGGGCCAGGGTG-GAGGCCCTG----CCT-----------GTGCTTCCTGCAGCCCCTACAG-TCCCTCCTCGGACGCTG
i chlSab2.chr4             C 0 I 17
s manLeu1.NW_012110441v1      178735 175 -    438239 -CCACCGTGACCTGCAGGGGCCAGGACAGGAGGAGAGGAAGCTTGGGGCTGGAACAGGACCTAGCCTGCGGGGTAGCAGGCACTC--------------CCCCAGGCTCCAG-----GGCTGCTTGTGCG--------------------GGTGGGCGAGGGTG-GAGGCCCTG----CCT-----------GTGCTCCCTGCAGCCCCTGCAG-TCCCTCCTCGGACGCTG
i manLeu1.NW_012110441v1   C 0 I 102
s colAng1.NW_012118799v1      207266 175 -    514179 -CCACCGTGACCTGCAGGGGCCAGGACAGGAGGAGAGGAAGCTTGGGGCTGGAACAGGACCTAGTCTGCGGGGTAGTAGGCACTG--------------CCCCAGGCTCCAG-----GGCTGCTTGTGCG--------------------GGTGGGCCAGGGGA-GAGGCCCTG----CCT-----------GTGCTCCCTGCAGCCCCAGCAG-TCCCTCCTCGGACGCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863009 196 + 204313951 CCCACCGTGACGTGCAGAGACCAGGACAAGAGGAGACGAAGCCTGAGGCTGGGACAGAACCAAGCCTGCAGGGTGGCTGGCGCTC--------------TCCCAGGCTCCAG-----GGCTGGCTGTGCCGGGCTTTCACCAACGAGTGGGGTGGGCCAGGGTG-GAGGTCCTG----CCC-----------GTGCTCCCTGCAGCCCCAGCCG-CCCCTCCTCAGACGCTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16021551 196 +  16417988 CCCACTGTGACTCGCAGAGGCCAGGACAAGAGGAGAGAGAGCCGGGGGCGGGGGCAGAGCTGAGCCTGCGGGGTGGTTGGTGCTC--------------TCCCAGGCTCCAG-----GACTGGCTGCGCCGGGCTGTCACCAGCCAGCAGGGTGGGCCAGGGTG-GCGGTCCCA----CCT-----------GTGCTCCCTGCAGCCCCCGCTG-CCCCTCCTCAGACACTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      106059 196 +    298490 CCCACCGTGACACGCAGAGGCCAGGACAAGAGGGGAGGAAGCCTGGGGCTGGGACAGAGCCGAGCCTGCGGGGTGGTTGGCGCTC--------------TCCCAGGCTCCAG-----GACTGGCTGTGCCGGGCTGTCACCAGCGAGCAGGGTGGGCCAGGGTG-GAGGTCCCG----CCT-----------GTGCTCCCTGCAGCCCCAGCCG-CCCCTCCTCAGACACTG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25435113 186 -  25620257 CCCGCCGTGATGCACAGAGGCCAGGACAAGAGGAGAGGAAGCCTGGGGCTGGGGCAGAACCGAGCCTGCGGGGTGGTTGGCGCTC--------------TCCCAGGCTCCAG-----GGCTGGCTGTGCCGGGCTTTCACCAGCGAG----------CAGGGTG-GAGGTCCCG----CCC-----------ATGCTCCCTGCAGCCCCAGCCG-CCCCCCTTCAGACGCTG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1889470 187 -   2165740 --CATCCAGAGCCACAGAGGCCAGAACAGCAGAGAACACAGCTCTAGGATATCAGAAGA-----GCTGATGGAAAGCGGCTGCTCATGTGACCACCCAGGCACAGGCTTCAGCTCCAGGCTCCT--------------------------GGTGAATCATGGCACAATGGCCTGTGGCCCT-----------GTGCTCCTTGTTGCCCAGCCCACTCTTTCTTCAGATGCC-
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11727695 893 +  42124431 I

a score=4248932.000000
s hg38.chr5_KI270793v1_alt     82362 516 +    126136  
s panTro5.chr5             181346090 516 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183063047 516 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      152480 515 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120579533 515 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179536445 492 - 180051392  
i rheMac8.chr6             I 98 C 0
s macFas5.chr6             181269597 492 - 181584905  
i macFas5.chr6             I 98 C 0
s macNem1.NW_012012389v1      276003 492 -   1764207  
i macNem1.NW_012012389v1   I 229 C 0
s cerAty1.NW_012009470v1      281142 491 -  16742782  
i cerAty1.NW_012009470v1   I 200 C 0
s chlSab2.chr4              90583218 516 -  91010382  
i chlSab2.chr4             I 17 C 0
s manLeu1.NW_012110441v1      179012 491 -    438239  
i manLeu1.NW_012110441v1   I 102 C 0
s colAng1.NW_012118799v1      207441 518 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863205 496 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16021747 503 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      106255 485 +    298490  
i cebCap1.NW_016108158v1   C 0 I 75
s aotNan1.NW_018503740v1    25435299 485 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1889657 544 -   2165740  
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11727695 893 +  42124431 I

a score=681201.000000
s hg38.chr5_KI270793v1_alt     82878 94 +    126136 GAGATGAGTCCGGCAGC-ATGTCCAGTGGAAAAGGGCCTCCAATTGGCTAGTTTAAGTGGCATTGACTAAGACCTGGCTAGCACTGGGCCCACA-G
s panTro5.chr5             181346606 94 - 181907262 GAGATGAGTCCGGCAGC-ATGTCCAGTGGAAAAGGGCCTCCAATTGGCTAGCTTAAGTGGCATTGACTAAGGCCTGGCTAGCACTGGGTCCACA-G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183063563 94 - 183735486 GAGATGAGTCCGGCAGC-ATGTCCAGTGGAAAAGGGCCTCCAATTGGCTAGCTTAAGTGGCATTGACTAAGGCCTGGCTAGCACTGGGCCCACA-G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      152995 94 +    698298 GAGATGAGTCCGGCAGC-ATGTCCAGTGGAAAAGGGCCTCCAACTGGCTAGTTTAAGTGGCACTGACTAAGGCCTGGCTAGCACTGGGCCCACA-G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580048 94 - 121039945 GAGACGAGTCCAGCAGC-ACGTCCAGTGGAAAAGGGCCTCCAACTGGCTAGTTTGAGTGGCATTGACTAAGGCCTGGCTAGCACTGGGTCCACA-G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179536937 90 - 180051392 GAGACAAGTCCGGCAGC-ATGTCCGGCGG-GAAGGGCCTCTAATTGGCTAGTTTGAGTGGCATTGACTAAGGCCTGGCT---GCGGGGCCCACG-G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270089 90 - 181584905 GAGACAAGTCCGGCAGC-ATGTCCGGCGG-GAAGGGCCTCTAATTGGCTAGTTTGAGTGGCATTGACTAAGGCCTGGCT---GCGGGGCCCACG-G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      276495 90 -   1764207 GAGACAAGTCCGGCAGC-ATGTCCGGTGG-GAAGGGCCTCTAATTGGCTAGTTTGAGTGGCATTGACTAAGGCCTGGCT---GCGGGGCCCACG-G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      281633 90 -  16742782 GAGATGAGTCTGGCAGC-ATGTCCGGCGG-GAAGGGCCTCTAACTGGCGAGTTTGAGTGGCATTGACTAAGGCCTGGCT---GCAGGGCCCACG-G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90583734 90 -  91010382 GAGACGAGTCCGGCAGC-ATGTCCGGCGG-GAAGGGCCTCTAATTGGCTAGTTTGAGTGGCATTGACTAAGGCCTGACT---GCGGGGCCCACG-G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      179503 90 -    438239 GAGACAAGTCCGGCAGC-ATGTCCGGTGG-GAAGGGCCTCTAATTGGCCAGTTTGAGTGGCATTGACTAAGGCCTGGCT---GCGGGGCCCACG-G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      207959 92 -    514179 GAGATGAGTCCGGCAGC-ATGTCTGGTGGAAAAGGGCCTCTAACTGGCTAGTTTGAGTGGCACTGAGTAAGGCCTGGCTA--GCAGGGCCCACG-G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863701 89 + 204313951 GAGACGAGCTGGGCAGC-ATGTCA---GGGAAAGGGCCTCTCAGCAGCCAGTTTGACTGGCACTGACTAA-GCCTGCCTAGGGCTGGGCCCACA--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16022250 92 +  16417988 GAGATGAGCCGGGCAGC-GTGTCAGTCGGGAAAGGGCCTCTGAGCAGCCAGTCTGAGCGGCGCTGACTAA-GCCTGGCTCGGGCTGGGCCCACA--
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25435784 94 -  25620257 GAGATGAGCCGGGCAGC-ATGTCAGGCGGGAAAGGGCCTCTCAGCAGCCAGTCTGAGTGGCACTGACTAAGGCCTGGCTAGGGCTGGGCCCACAG-
i aotNan1.NW_018503740v1   C 0 I 31
s otoGar3.GL873745           1890201 92 -   2165740 GACACAAGCCAGGCAGTGATGTCCAGTGGGAAGGGGTTTCTAACAGATGTGCTTGAGTGGAA---GATAAGGACTAGCTAGTGCTGGACCCACT-A
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      106740 75 +    298490 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=285813.000000
s hg38.chr5_KI270793v1_alt     82972 45 +    126136 GTCCCGGTAGGTCATCTGGTTGGGACCCCCACAC-----CCAGCACTCCT-
s panTro5.chr5             181346700 45 - 181907262 GTCCCGGTAGGTCATCTGGTTGGGACCCCCACAC-----CCAGCACTCCT-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183063657 45 - 183735486 GTCCCGGTAGGTCATCTGGTTGGGACCCCCACAC-----CCAGCACTCCT-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153089 45 +    698298 ATCCCGGTAGGCCATCTGGTTGGGACCCCCACAC-----CCAGCACTCCT-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580142 45 - 121039945 GTCCCGGTAGGTCATCTGGCTGGGACCCCCACAC-----CCAGCACTCCT-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537027 44 - 180051392 GTCCCAGTAGGTCGTCTGGCTGGGACCCCCACAC-----CCAGAGCTCC--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270179 44 - 181584905 GTCCCAGTAGGTCGTCTGGCTGGGACCCCCACAC-----CCAGAGCTCC--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      276585 44 -   1764207 GTCCCAGTAGGTCGTCTGGCTGGGACCCCCACAC-----CCAGAGCTCC--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      281723 44 -  16742782 GTCCCAGTAGGTCGTCCGGCTGGGACCCCCACAC-----CCAGAGCTCC--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90583824 44 -  91010382 GTCCCAGTAGGTCGTCTGGCTGGGACCCCCACAC-----CCAGAACTCC--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      179593 44 -    438239 GTCCCAGTAGGTCGTCTGGCTGGGACCCCCACAC-----CCAGAGCTCC--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208051 44 -    514179 GTCCCAGTAGGTCGTCTGGCTGGGACCCCCACAC-----CCAGAACTCC--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863790 40 + 204313951 GTCCTGGCAGGTGGTCC----GGGACCCACACAC-----CCAGCACCCC--
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16022342 40 +  16417988 GTCTGGGCAGGTGGTCC----GGGACCCACACAC-----CCACCACCCC--
i saiBol1.JH378155         C 0 I 1
s otoGar3.GL873745           1890293 49 -   2165740 ATCTTGGTAGGTCATCCAG-TGGGAGCTATACTCACCTGCTAACACTGC-A
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25435878 31 -  25620257 I
e cebCap1.NW_016108158v1      106740 75 +    298490 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=435706.000000
s hg38.chr5_KI270793v1_alt     83017 49 +    126136 ATGTCCCACAGAGCTGCTTTTGTCACAGC-ACACACAGCTGCATTCATGC
s panTro5.chr5             181346745 49 - 181907262 ATGTCCCACGGAGCCGCTTTTGTCACAGC-ACACACAGCTGCATTCATGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183063702 49 - 183735486 ATGTCCCACGGAGCCGCTTTTGTCACAGC-ACACACAGCTGCATTCATGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153134 49 +    698298 ATGTCCCACGGAGCCGCTTTTGTCACAGC-ACACACAGCTGCATTCATGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580187 49 - 121039945 ATGTCCCACGGAGCCGCTTTTGTCACAGC-ACACACAGCTGCGTTCATGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537071 48 - 180051392 -TGTCCCACAGAGCTGCTTTTCTCACGGC-ACACACAGCTGCGTTCGTGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270223 48 - 181584905 -TGTCCCACAGAGCTGCTTTTCTCACAGC-ACACACAGCTGCGTTCGTGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      276629 48 -   1764207 -TGTCCCACAGAGCTGCTTTTCTCACAGC-ACACACAGCTGCGTTCGTGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      281767 48 -  16742782 -TGTCCCACAGAGCTGCTTTTCTCCCAGC-ACACACAGCTGCGTTCGTGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90583868 48 -  91010382 -TGTCCCACAGAGCCGCTCTTCTCACAGC-ACACACAGCTGCGTTCATGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      179637 48 -    438239 -TGTCCCACAGAGCTGCTTTTCTCACAGC-ACACACAGCTGCGTTCGTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208095 48 -    514179 -TGTCCCACAGAGCTGCTTTTCTCACAGC-ACACACAGCTGCGTTCATGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863831 49 + 204313951 ATGTCTCACAGAGCCGCGTTTGTCACAGC-ACACACAGCTGCATTCACGC
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16022383 49 +  16417988 GTGTCCTGCAGAGCCGCGTCTGTCACAGC-ACACACAGCTGCGTTCACGC
i saiBol1.JH378155         I 1 C 0
s aotNan1.NW_018503740v1    25435909 49 -  25620257 ATGTCCCACAGAGCCGAGTTTGTCACGGC-ACACACAGCTGCGTTCACGC
i aotNan1.NW_018503740v1   I 31 C 0
s otoGar3.GL873745           1890342 49 -   2165740 GTGTTAGGTGGAGCCTCTTTTGTCACAGTGATGCTCA-CTGTGTTTATGC
i otoGar3.GL873745         C 0 I 141
e cebCap1.NW_016108158v1      106740 75 +    298490 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=69720.000000
s hg38.chr5_KI270793v1_alt     83066 7 +    126136 ACAGACA
s panTro5.chr5             181346794 7 - 181907262 ACAGACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183063751 7 - 183735486 ACAGACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153183 7 +    698298 ACAGACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580236 7 - 121039945 ACAGACA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537119 7 - 180051392 ACAGACA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270271 7 - 181584905 ACAGACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      276677 7 -   1764207 ACAGACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      281815 7 -  16742782 ACAGACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90583916 7 -  91010382 ACAGACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      179685 7 -    438239 ACAGACA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208143 7 -    514179 ACAGACA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863880 7 + 204313951 ACAGACA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16022432 7 +  16417988 ACAGACA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25435958 7 -  25620257 ACAGACA
i aotNan1.NW_018503740v1   C 0 I 1661
e otoGar3.GL873745           1890391 141 -   2165740 I
e cebCap1.NW_016108158v1      106740 75 +    298490 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=32050.000000
s hg38.chr5_KI270793v1_alt     83073 4 +    126136 GGTC
s panTro5.chr5             181346801 4 - 181907262 GGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183063758 4 - 183735486 GGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153190 4 +    698298 GGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580243 4 - 121039945 GGCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537126 4 - 180051392 GGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270278 4 - 181584905 GGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      276684 4 -   1764207 GGCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      281822 4 -  16742782 GGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90583923 4 -  91010382 GGCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      179692 4 -    438239 GGCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208150 4 -    514179 GGCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863887 4 + 204313951 GGCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16022439 4 +  16417988 GGCC
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e otoGar3.GL873745           1890391 141 -   2165740 I
e cebCap1.NW_016108158v1      106740 75 +    298490 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=22698.000000
s hg38.chr5_KI270793v1_alt     83077 3 +    126136 CTC
s panTro5.chr5             181346805 3 - 181907262 CTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183063762 3 - 183735486 CTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153194 3 +    698298 CTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580247 3 - 121039945 CTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537130 3 - 180051392 CTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270282 3 - 181584905 CTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      276688 3 -   1764207 CTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      281826 3 -  16742782 CTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90583927 3 -  91010382 CTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      179696 3 -    438239 CTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208154 3 -    514179 CTC
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16022443 3 +  16417988 CTC
i saiBol1.JH378155         C 0 I 4
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e otoGar3.GL873745           1890391 141 -   2165740 I
e cebCap1.NW_016108158v1      106740 75 +    298490 I
e calJac3.chr2             203863891 0 + 204313951 C
e canFam3.chr34             11727695 893 +  42124431 I

a score=2473897.000000
s hg38.chr5_KI270793v1_alt     83080 500 +    126136  
s panTro5.chr5             181346808 500 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183063765 500 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153197 497 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580250 410 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537133 475 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270285 475 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      276691 475 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      281829 474 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90583930 477 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      179699 474 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208157 545 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e otoGar3.GL873745           1890391 141 -   2165740 I
e cebCap1.NW_016108158v1      106740  75 +    298490 I
e saiBol1.JH378155          16022446   4 +  16417988 I
e calJac3.chr2             203863891   0 + 204313951 C
e canFam3.chr34             11727695 893 +  42124431 I

a score=46273.000000
s hg38.chr5_KI270793v1_alt     83580 7 +    126136 CTCAGAG
s panTro5.chr5             181347308 7 - 181907262 CTCAGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064265 7 - 183735486 CTCAGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153694 7 +    698298 CTCAGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580660 7 - 121039945 CTCAGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537608 7 - 180051392 CTCAGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270760 7 - 181584905 CTCAGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277166 7 -   1764207 CTCAGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282303 7 -  16742782 CTCAGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584407 7 -  91010382 CTCAAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180173 7 -    438239 CTCAGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208702 7 -    514179 CTCAGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863891 7 + 204313951 CTCCAGG
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e otoGar3.GL873745           1890391 141 -   2165740 I
e cebCap1.NW_016108158v1      106740 75 +    298490 I
e saiBol1.JH378155          16022446 4 +  16417988 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=367036.000000
s hg38.chr5_KI270793v1_alt     83587 58 +    126136 ACCCGGTGAGGAGACGCAGCTGAAGATGCCTGGGCAGGACCCGGGGCCGACCAGGCTT
s panTro5.chr5             181347315 58 - 181907262 ACCCGGTGAGGAGACGCAGCTGAAGATGCCTGGGCAGGACCCTGGGCCGACCAGGCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064272 58 - 183735486 ACCCGGTGAGGAGACGCAGCTGAAGATGCCTGGGCAGGACCCTGGGCCGACCAGGCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153701 58 +    698298 ACCCGGTGAGGAGATGCAGCTGAAGATGCCTGGGCAGGACCCAGGGCTGACCAGGCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580667 58 - 121039945 ACCGGGTGAGGAGACGCAGCTGAAGATGGCTGGGCAGTACCCGGGGCCGACCGGGCTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537615 57 - 180051392 ACCGGGTGAGGAGATGCGGCTGAAGGTGGCAGGGCAGGACCC-AGGCTGACCAGGTTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270767 57 - 181584905 ACCGGGTGAGGAGATGCGGCTGAAGGTGGCAGGGCAGGACCC-AGGCTGACCAGGTTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277173 57 -   1764207 ACCGGGTGAGGAGATGCGGCTGAAGGTGGCAGGGCAGGACCC-AGGCTGACCAGGTTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282310 57 -  16742782 ACCGGGTGAGGAGATGCGGCTGAAGGTGGCAGGGCAGGACCC-AGGCTGACCAGGTTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584414 57 -  91010382 ACCAGGTGAGGAGATGCGGCTGAAGGTGGCAGGGCAGGACCC-AGGCTGACCAGGTTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180180 57 -    438239 ACCGGGTGAGGAGATGCGGCTGAAGGTGGCAGGGCAGGACCC-AGGCTGACCAGGTTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208709 57 -    514179 ACCGGGTGAGGAGATGCGGCTGAAGGTGGCAGGGCAGGACCC-AGGCTGCCCAGGTTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863898 56 + 204313951 ACCCTGTGAGGAGACGCGGCTGCAGGCGGCTGGGCAGGACCT-AGGTCAACCAGACC-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16022450 56 +  16417988 ACCCTGTGGGGAGACGTGGCCGCAGGTGGCTGGGCAGGACCC-AGGTCGACCAGACC-
i saiBol1.JH378155         I 4 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e otoGar3.GL873745           1890391 141 -   2165740 I
e cebCap1.NW_016108158v1      106740 75 +    298490 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=148336.000000
s hg38.chr5_KI270793v1_alt     83645 17 +    126136 CTCAGAGCTGTCCTCAG
s panTro5.chr5             181347373 17 - 181907262 CTCAGAGCTATCCTCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064330 17 - 183735486 CTCAGAGCTATCCTCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153759 17 +    698298 TTCAGAGCTATCCTCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580725 17 - 121039945 CTCAGAGCTGTCCTCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537672 17 - 180051392 CTCAGAGCTGTCCTCGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270824 17 - 181584905 CTCAGAGCTGTCCTCGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277230 17 -   1764207 CTCAGAGCTGTCCTCGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282367 17 -  16742782 CTCAGAGCTGTCCTCGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584471 17 -  91010382 CTTAGAGCTGTCCTCGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180237 17 -    438239 CTCAGAGCTGTCCTCGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208766 17 -    514179 CTCAGAACTGTCCTCGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863954 17 + 204313951 CTCAGAGCTGTCCTCTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16022506 17 +  16417988 CTCAGGGCTGTCCTCTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      106815 17 +    298490 CTCAGAGCTGTCCTCTG
i cebCap1.NW_016108158v1   I 75 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e otoGar3.GL873745           1890391 141 -   2165740 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=246665.000000
s hg38.chr5_KI270793v1_alt     83662 32 +    126136 CTGCTAATCCC-CTCC-AGTGGG-TCAGGGAGTCC
s panTro5.chr5             181347390 32 - 181907262 CTGCTAATCCC-CTCC-AGTGGG-TCAGGGAGTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064347 32 - 183735486 CTGCTAATCCC-CTCC-AGTGGG-TCAGGGAGTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153776 32 +    698298 CTGCTAATCCC-CTCC-AGTGGG-TCAGGGAGTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580742 32 - 121039945 CTGCTAATCCC-CTCC-GGTGGG-TCAGGGAGTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537689 32 - 180051392 CCGCTCTTCCC-CTCC-AGTGGG-TCAGGGAGTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270841 32 - 181584905 CCGCTCTTCCC-CTCC-AGTGGG-TCAGGGAGTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277247 32 -   1764207 CCGCTCTTCCC-CTCC-AGTGGG-TCAGGGAGTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282384 32 -  16742782 CCGCTCTTCCT-CTCC-AGTGGG-TCGGGGAGTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584488 32 -  91010382 CCGCTCTTCCC-CTCC-AGTGGG-TCAGGGAGTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180254 32 -    438239 CCGCTCTTCCC-CTCC-AGTGGG-TCGGGGAGTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208783 32 -    514179 CCGCTCCTCCC-CTCC-GGTGGG-TCGGGGAGTCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203863971 32 + 204313951 CTGCCCATCCC-CCCT-GGGGGG-TTGGGGCATCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16022523 33 +  16417988 CCGCCCATCCC-CCCTGGGGGGG-TCGGGGCATCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      106832 32 +    298490 CTGCCCATCCC-CCCC-AGGGGG-TCGGGGCGTCC
i cebCap1.NW_016108158v1   C 0 I 222
s otoGar3.GL873745           1890532 33 -   2165740 CTGCTCACCCCGCTCT-CCTGGGTTTAGAGAGTT-
i otoGar3.GL873745         I 141 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=280894.000000
s hg38.chr5_KI270793v1_alt     83694 39 +    126136 TGAGCAGCACAGGACCTGGAGGAAATACAGTGACAACCC
s panTro5.chr5             181347422 39 - 181907262 TGAGCAGCACAGGACCTGGAGGAAATACAGTGACAACCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064379 39 - 183735486 TGAGCAGCACAGGACCTGGAGGAAATACAGTGACAACCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153808 39 +    698298 TGAGCAGCACAGGACCTGGAGGAAATACAGTGACAACCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580774 39 - 121039945 TGAGCAGCACAGGACCTGGAGGAAATACAGAAACAACCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537721 38 - 180051392 TGAGCAGCACAGGACCTGGAGGAAATACAATGACAAT-C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270873 38 - 181584905 TGAGCAGCACAGGACCTGGAGGAAATACAATGACAAT-C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277279 38 -   1764207 TGAGCAGCACAGGACCTGGAGGAAATACAATGACAAT-C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282416 38 -  16742782 TGAGCAGCACAGGACCTGGAGGAAATACAATGACAAT-C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584520 38 -  91010382 TGAGCAGCACAGGACCTGGAGGAAATACAATGACAAT-C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180286 38 -    438239 TGAGCAGCACAGGACCTGGAGGAAATACAATGACAAT-C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208815 39 -    514179 TGAGCAGCACAGGACCTGGGGGAAATACAATGACAATCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203864003 39 + 204313951 TGAGCAGCTCAGGACCTTGAGGAAATGCAGTGACATCTC
i calJac3.chr2             C 0 I 2
s saiBol1.JH378155          16022556 39 +  16417988 GGAGCAGCTCAGGACCTCGAGGACATGTGGTGACATCTG
i saiBol1.JH378155         C 0 I 2
s otoGar3.GL873745           1890565 37 -   2165740 --AGCACCACAGAGCCTTGAAGAACTATGTCGACAATCT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e cebCap1.NW_016108158v1      106864 222 +    298490 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=1885377.000000
s hg38.chr5_KI270793v1_alt     83733 226 +    126136 CCTGGCCTGCAAGCAGGTGGCACGAGACAGGCACCCCAACATGG---------------------CCAGCAGGCGGGGACACCAGCTTCAGAGGCTTGGCCCCTCCAACCCACACCCCAAGAGCATTggcctccctggtggtctc-ctg---gccctgtttgggttttgtgtctcaccaggctcatgtgacacttgggacccacctcagagccaagccagacaaggcccctggggagcttcaggtcccaca
s panTro5.chr5             181347461 226 - 181907262 CCTGGCCTGTAAGCAGGTGGCACGAGACGGGCACCCCAACATGG---------------------CCAGCAGGCGGGGACACCAGCTTCAGAGGCTTGGCCCCTCCAACCCACACCCCAAGAGCATTGGCCTCCCTGGTGGTCTC-CTG---GCCCTGTTTGGGTTTTGTGTCTCACCAGGCTCATGTGACACTTGGGACCCACCTCAGAGCCAAGCCAGACAAGGCCCCTGGGGAGCTTCAGGTCCCACA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064418 226 - 183735486 CCTGGCCTGTAAGCAGGTGGCACGAGACGGGCACCCCAACATGG---------------------CCAGCAGGCGGGGACACCAGCTTCAGAGGCTTGGCCCCTCCAACCCACACCCCAAGAGCATTGGCCTCCCTGGTGGTCTC-CTG---GCCCTGTTTGGGTTTTGTGTCTCACCAGGCTCATGTGACACTTGGGACCCACCTCAGAGCCAAGCCAGACAAGGCCCCTGGGGAGCTTCAGGTCCCACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      153847 229 +    698298 CCTGGCCTGCAAGCAGGTGGCACGAGACGGGCACCCCAACATGG---------------------CCAGCAGGCGGGGACACCAGCTTCAGAGGCTTGGCCCCTCCAACCCACACCCCAAGAGCATTGGCCTCCCTGGTGGTCTC-CTGGCCGCCCTGTTTGGGTTTCGTGTCTCACCAGGCTCATGTGACACTTGGGACCCACCTCAGAGCCAAGCCAGACAAGGCCCCTGGGGAGCTTCAGGTCCCACA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120580813 221 - 121039945 CCTGGCCTGCAAGCAGGTGGCAGGAGACGGGCACCCCAACACGG---------------------CCAGCAGGCGGGGACACCGGCTCCAG-----CAGCCCCTCCAACCCACACCCCAAGAGCATTGGCCTCCCTGGGGGTCTC-CTG---GCCCTGTTTGGGTTTTGTGCCTCACCAGGCTCATGTGACACTTGGGACCCACCTCAGAGCCAGGCCAGACAAGGCTCCTGGGGAGCTTCAGGTCCCACA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179537759 246 - 180051392 CCTGGCCTGCAAGCAGGTGGCAGGAGACGGGCACCCCAACATGG-CAGTGGGCAGCCCAACATGGCCAGCAGGCAGGGACACTGGTTCCAGTGGCTCAGCCCCTCCAGCCCACACCCCAAGAGCATTGACCTCCCTGGTGGTCTC-CTG---GCCCTGTTTGGGTTTTGTGCCTCACCAGGCTCATGTGACAGCCAGGACCCGCCTCAGAGCCAGGCCAGACAAGGCCCCTAGAGAGCTTCAGGTCCCACA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181270911 246 - 181584905 CCTGGCCTGCAAGCAGGTGGCAGGAGACGGGCACCCCAACATGG-CAGTGGGCAGCCCAACATGGCCAGCAGGCAGGGACACTGGTTCCAGTGGCTCAGCCCCTCCAGCCCACACCCCAAGAGCATTGACCTCCCTGGTGGTCTC-CTG---GCCCTGTTTGGGTTTTGTGCCTCACCAGGCTCATGTGACAGCCAGGACCCGCCTCAGAGCCAGGCCAGACAAGGCCCCTAGAGAGCTTCAGGTCCCACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277317 246 -   1764207 CCTGGCCTGCAAGCAGGTGGCAGGAGACGGGCACTCCAACATGG-CAGTGGGCAGCCCAACATGGCCAGCAGGCAGGGACACTGGTTCCAGTGGCTCAGCCCCTCCAGCCCACACCCCAAGAGCATTGACCTCCCTGGTGGTCTC-CTG---GCCCTGTTTGGGTTTTGTGCCTCACCAGGCTCATGTGACAGCCAGGACCCGCCTCAGAGCCAGGCCAGACAAGGCCCCTAGAGAGCTTCAGGTCCCACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282454 245 -  16742782 CCTGGCCTGCAAGCAGGTGGCAGGAGATGGGCACCCCAACATGG-CAGTGGGCAGCCCAACATGGCCAGCAGGCAGGGACACTGGTTCCAGTGGCTCAGCCCCTCCAGCCCACACCCCAAGAGCATTGACCTCCCTGGTGGTCTC-CT----GCCCCGTCTGGGTTTTGTGCCTCACCAGGCTCATGTGACAGCCAGGACCCGCCTCAGAGCCAGGCCAGACAAGGCCCCTAGAGAGCTTCAGGTCCCACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584558 246 -  91010382 CCTGGCCTGCAAGCAGGTGGCAGGAGATGGGCACCCCAACATGG-CAGTGGGCAGCCCAACATGGCCAGCAGGCGGGGACACTGGTTCCAGTGGCTCAGCCCCTCCAGCCCACACCCCAAGAGCATTGACCTCCCTGGTGGTCTC-CTG---GCCCTGTTTGGGTTTTGTGCCTCACCAGGCTCATGTGACAGCCAGGACCCGCCTCAGAGCCAGGCCAGAGAAGGCCCCTAGAGAGCTTCAGGTCCCACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180324 246 -    438239 CCTGGCCTGCAAGCAGGTGGCAGGAGATGGGCACCCCAACATGG-CAGTGGGCAGCCCAACATGGCCAGCAGGCAGGGACACTGGTTCCAGTGGCTCAGCCCCTCCAGCCCACACCCCAAGAGCATTGACCTCCCTGGTGGTCTC-CTG---GCCCTGTTGGGGTTTTGTGCCTCACCAGGCTCATGTGACAGCCAAGACCCGCCTCAGAGCCAGGCCAGACAAGGCCCCTAGAGAGCTTCAGGTCCCACA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      208854 247 -    514179 CCTGGCCTGCAAGCAGGTGGCAGGAGACGGGCACCCCAACATGGCCAGTGGGCACCCCAACATGGCCAGCAGGCGGGGACGCTGGTTCCAGCGGCTCAGCCCCTCCAGCCCACACCCCAAGAGCATTGGCCTCCCTGGTGGTCTC-CTG---GCCCTGTTTGGGTTTTGTGCCTCACCAGGCTTATGTGACATCCAGGACCCGCCTCAGAGCCAGGCCAGACAAGGCCCCTAGAGAGCTTCAGGTCCCACT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203864044 224 + 204313951 CCTGGACTGCAAGCAGGTGGTGGGAGATGGGCACCCTGACGT-G---------------------CCAGCAGGCAGGGACACTGGCTCCACAGGCTTGGCCCCTCTGGCCCACACCCCAAGAGCGCTGACCTCCC-GGTGGTCTT-CTG---ACCCGGTTTGGGTTTTGTGCTCTACCAGGCTCATGTGACAGCTGGGACCCACCTCAGGGCCAGGCCAGACAGGCTCCCTGGAGAGACTTGGGTCCCACA
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          16022597 209 +  16417988 CCTGGCCTGCAAGCAGGTGGCGGGAGATGGGCACCGTCTCATGG---------------------CCAGAA----------------CCACAGGCTTGGCCCCTCCAGTCTGCACCCCAGGAGCGCTGACCTCCT-GGTGGTCTT-CTG---GTCCGGTCTGGGTTTTGGGCTCTACCGGGCTCATGTGACATCTGGGACCCGCCTCAGGGCCAGGCCAGACAGGCTCCCTGGAGAGACTCGGGCCCCACA
i saiBol1.JH378155         I 2 C 0
s cebCap1.NW_016108158v1      107086 217 +    298490 CCTGGCCTGCAAGCAGGTGGTGGGAGATGGGCACCCTGACGTGA---------------------CCAGCAGGCGGGGA--------CCACAGGCTTGGCCCCTCCAGCCCACACCCCAAGAGCACTGACCTCCC-AGTGGTCTT-CTG---GCCCAGTTGGGGTTTTGTGCTCTACGGCGCTCATGTGACAGCTGGGACCCGCCTCAGGGCCAGGCCAGACAGGCTCCCTGGAGAGACTCGGGCCCCACA
i cebCap1.NW_016108158v1   I 222 C 0
s otoGar3.GL873745           1890602 176 -   2165740 CTTTGCCCAGAATCAGATGGCAGAAG--GGGCACCTGGATGTGG---------------------CCAGCAAGCACAAG--------CCAAGGGT----CTCCACCAGTTCTGACCC---GAGCTTTG--------GGTAGTCTCACGG---GCCCTGTCTAGGTTTTGTGCTTCCCCAGGCATGAATGACCACAAGGACCCGCCTCACAGCCA--------------------------CGGAGCATGCA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e canFam3.chr34             11727695 893 +  42124431 I

a score=794381.000000
s hg38.chr5_KI270793v1_alt     83959 103 +    126136 gcctgactggaggcaggaAGGAGACCCCTGG----GGG--GCGTG-CAGTGCCTTGAGTCCTACTGAGGGGATGC-CTGGTGC---GCAAAGGCCTGGCCCCGGC-------CCCTCAGC-G
s panTro5.chr5             181347687 103 - 181907262 GCCTGACTGGAGGCAGGAAGGAGACCCCTGG----GGG--GTGTG-CAGTGCCTTGAGTCCTACTGAGGGGATGC-CTGGTGC---GCAAAGGCCTGGCCCCGGC-------CCCTCAGC-G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064644 103 - 183735486 GCCTGACTGGAGGCAGGAAGGAGACCCCTGG----GGG--GCGTG-CAGTGCCTTGAGTCCTACTGAGGGGATGC-CTGGTGC---GCAAAGGCCTGGCCCCGGC-------CCCTCAGC-G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154076 103 +    698298 GCCTGACTGGAGGCAGGAAGGAGACCCCTGG----GGG--GCGTG-CAGTGCCTTGAGTCCTACTGAGGGGATGC-CTGGTGT---GCAAAGGCCTGGCCCCGAC-------CCCTCAGC-G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581034 103 - 121039945 GCCTGACCGGGGGCAGGAAGGAGACACCTGG----GGG--GCGTG-CAGTGCCTTGAGTCCTACTGAGGGGACGC-CTGATGC---GCAAAGGCCTGGCCCCGGC-------CCCTCAGC-G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538005 104 - 180051392 GCCTGACCGGAGGCAGGAAGGAGACCCCTGGA---GGG--GTGTG-CACTGCCTTGAGTCCTACTGAGGGGATGC-CTGGTGT---GCAGAGGCCTGGCCCCGGC-------ACCTCAGC-A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271157 104 - 181584905 GCCTGACCGGAGGCAGGAAGGAGACCCCTGGA---GGG--GTGTG-CACTGCCTTGAGTCCTACTGAGGGGATGC-CTGGTGT---GCAGAGGCCTGGCCCCGGC-------ACCTCAGC-A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277563 104 -   1764207 GCCTGACCGGAGGCAGGAAGGAGACCCCTGGA---GGG--GTGTG-CACTGCCTTGAGTCCTACTGAGGGGATGC-CTGGTGT---GCAGAGGCCTGGCCCCGGC-------ACCTCAGC-A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282699 106 -  16742782 GCCTGACCGGAGGCAGGAAGGAGACCCCTGGA---GGGGTGTGTG-CACTGCCTTGAGTCCTACTGAGGGGATGC-CTGGTGT---GCAGAGGCCTGGCCCCGGC-------ACCTCAGC-G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584804 104 -  91010382 GCCTGACCAGAGGCAGGAAGGAGACCCCTGGA---GGG--GTGTG-CACTGCCTTGAGTCCTACTGAGGGGATGC-CTAGTGT---GCAGAGGCCTGGCCCCGGC-------ACCTCAGC-G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180570 104 -    438239 GCCTGACCGGAGGCAGGAAGGAGACCCCTGGA---GGG--GTGTG-CACTGCCTTGAGTCCTACTGAGGGGATGC-CTGGTGT---GCAGAGGCCTGGCCCCGGC-------ACCTCAGC-G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209101 103 -    514179 GCCTGACCGGAGGCAGGAAGGAGATCCCTGG----GGT--GTGTG-CACTGCCTTGAGCCCTCCTGAGGGGAGGC-CTGGTGT---GCAGAGGCCTGGCCCCGGC-------ACCTCAGC-G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203864268 107 + 204313951 GCCTGACCCAAGGCAGGAAGGAGACAACGGGAGAGAGG--GGGAGACGCTGCCTTGGGTCACACTGAAGGGACGT-CTGGTAT---TCAGAGGCCTGACCCTGGC-------ACCTTGAT--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16022806 107 +  16417988 GCCTGACCCAAGGCAGGAAGGAGACAACAGGACAGGGG--GTGAGATACTGCCTTGGGTCCCACTGAAGGGAGGC-CTGGTGC---TCAGAGGCCTGACCCCAGC-------CCCTCGGT--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      107303 108 +    298490 GCCTGACCCAAGGCAGGAAGGAGACAATGGGGGAGGGG--GTGAGACACTGCCTTGGGTCCCACTGAAGGGATGC-CTGGTTC---TCAGAGGCCTGACCTCGGC-------CCCTCGGCG-
i cebCap1.NW_016108158v1   C 0 I 1237
s otoGar3.GL873745           1890778  67 -   2165740 GCCT--------------------CCATCAG----AGG--GT----C------------CCTCCTTAGGAG-----CTGGTCC-------AGACCCAGCCCCTGCTTGGGGGGCTCCAGT-G
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11728588 105 +  42124431 GCCCCACTGGCAGCGGGAGGCA--CCCTTGG----GTG--GCCAC-AGCCTCCTCGAGTCTCACTGAGCAGCGGCGCTGGTGCTGGGCAGAGGCCCCACGCCAGC-------CCCTCACC-A
i canFam3.chr34            I 893 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I

a score=203324.000000
s hg38.chr5_KI270793v1_alt     84062 40 +    126136 TGTGAGAGCAGGAA---GCT-GCTGTGTCCTCGATGCCTCCTGT
s panTro5.chr5             181347790 40 - 181907262 TGTGAGAGCAGGAA---GCT-GCTGTGTCCTAGATGCCTCCTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064747 40 - 183735486 TGTGAGAGCAGGAA---GCT-GCTGTGTCCTAGATGCCTCCTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154179 40 +    698298 TGTGACAGCAGGAA---GCT-GCTGTGTCCTCGATGCCTCCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581137 40 - 121039945 TGTGAGAGCAGGAA---GCG-GCTGCGTCCTCGATGGCTCCTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538109 36 - 180051392 TGTGAGAGCAGGAA---GCT-GCTGTGTCCTCGTTTGCTC----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271261 36 - 181584905 TGTGAGAGCAGGAA---GCT-GCTGTGTCCTCGTTTGCTC----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277667 36 -   1764207 TGTGAGAGCAGGAA---GCT-GCTGTGTCCTCGTTTGCTC----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282805 36 -  16742782 TGTGAGAGCAGGAA---GTT-GCTGTGTCCTCGTTTGCTC----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584908 34 -  91010382 TGTGAGAGCAGGAA---GCT-GCTGTGTCCTCGTTTGC------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180674 36 -    438239 TGTGAGAGCAGGAA---GCT-GCTGTGTCCTCGTTTGCTC----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209204 39 -    514179 TGTGAGAGCAGGAAGTTGCT-GCTGTGTCCTCGTTTGCTC----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203864375 35 + 204313951 -----GAGCAGGAA---GCA-GCTGCATCCTCCATGGCCCCtgt
i calJac3.chr2             C 0 I 1186
s saiBol1.JH378155          16022913 35 +  16417988 -----GAGCAGGAA---GCA-GCTGCATCCTCCATGGGCCCtgt
i saiBol1.JH378155         C 0 I 1179
s otoGar3.GL873745           1890845 22 -   2165740 ----TCTGCAGGAA---GCA-GCACTATCC--------------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11728693 41 +  42124431 GCTGGGCCAAGGAA---GCAGGCCCTGCACCCGACGGCTCCTGT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e cebCap1.NW_016108158v1      107411 1237 +    298490 I

a score=17557.000000
s hg38.chr5_KI270793v1_alt     84102 9 +    126136 CCTGCTGTC
s panTro5.chr5             181347830 9 - 181907262 CCTGCTGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064787 9 - 183735486 CCTGCTGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154219 9 +    698298 CCTGCTGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581177 9 - 121039945 CCTCCTGTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538145 5 - 180051392 ----CTGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271297 5 - 181584905 ----CTGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277703 5 -   1764207 ----CTGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282841 5 -  16742782 ----CTGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584942 2 -  91010382 -------TC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180710 5 -    438239 ----CTGTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209243 5 -    514179 ----CTGTC
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1890867 7 -   2165740 CCCACTG--
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11728734 2 +  42124431 -------CC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25435965 1661 -  25620257 I
e cebCap1.NW_016108158v1      107411 1237 +    298490 I
e saiBol1.JH378155          16022948 1179 +  16417988 I
e calJac3.chr2             203864410 1186 + 204313951 I

a score=154586.000000
s hg38.chr5_KI270793v1_alt     84111 16 +    126136 CTCCTATCCCAAGGAA
s panTro5.chr5             181347839 16 - 181907262 CTCCTATCCCAAGGAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064796 16 - 183735486 CTCCTATCCCAAGGAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154228 16 +    698298 CTCCTATCCCAAGGAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581186 16 - 121039945 CTCTTATCCCAAGGAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538150 16 - 180051392 CTCCTAGCCCAAGGAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271302 16 - 181584905 CTCCTAGCCCAAGGAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277708 16 -   1764207 CTCCTAGCCCAAGGAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282846 16 -  16742782 CTCCTAGCCCAAGGAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584944 16 -  91010382 CTCCTAGCCCAAGGAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180715 16 -    438239 CTCCTAGCCCAAGGAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209248 16 -    514179 CTCCTAGCCCAAGGAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203865596 16 + 204313951 CTCCTGTCCCTGGGAG
i calJac3.chr2             I 1186 C 0
s saiBol1.JH378155          16024127 16 +  16417988 CTCCTGTCCCAAGGAG
i saiBol1.JH378155         I 1179 C 0
s aotNan1.NW_018503740v1    25437626 16 -  25620257 CTCCTGTCCCAAGGAG
i aotNan1.NW_018503740v1   I 1661 C 0
s otoGar3.GL873745           1890874 16 -   2165740 CTCTTGGCCCAGGGAG
i otoGar3.GL873745         C 0 I 17
s canFam3.chr34             11728736  8 +  42124431 --------CCAGGGAA
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      107411 1237 +    298490 I

a score=130302.000000
s hg38.chr5_KI270793v1_alt     84127 21 +    126136 TGGGCAGCCGGGCCCGGGGTG
s panTro5.chr5             181347855 21 - 181907262 TGGGCAGCCGGGCCCGGGGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064812 21 - 183735486 TGGGCAGCCGGGCCCGGGGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154244 21 +    698298 TGGGCGGCCGGGCCCGGGGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581202 21 - 121039945 CGGGCAGCCAGGCCCGTGGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538166 21 - 180051392 CGGACAACGGGGCCCGGGGCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271318 21 - 181584905 CGGACGACGGGGCCCGAGGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277724 21 -   1764207 CGGACAACGGGGCCCAGGGCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282862 21 -  16742782 CGGACAACGGGGCCCGGGGCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584960 20 -  91010382 CGGACAAC-GGGCCCAGGGCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180731 21 -    438239 CGGACAACGGGGCCCGGGGCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209264 21 -    514179 CGGACAGCGGGGCCCGGGGCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203865612 21 + 204313951 TGGGCAGCCAGGCCCGGGCAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024143 21 +  16417988 TGGGCAGCTAGACCCAGGCGG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25437642 21 -  25620257 TGGGCAGCCGGGCCCGGGCGG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11728744 17 +  42124431 ---AAGGTTGTGCCCTGTGG-
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1890890 17 -   2165740 I
e cebCap1.NW_016108158v1      107411 1237 +    298490 I

a score=100242.000000
s hg38.chr5_KI270793v1_alt     84148 12 +    126136 CTGTTTGTTCAC
s panTro5.chr5             181347876 12 - 181907262 CTGTTTGTTCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064833 12 - 183735486 CTGTTTGTTCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154265 12 +    698298 CTGTGTGTTCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581223 12 - 121039945 CTGTTTGTTCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538187 12 - 180051392 CTGTTTGCTCGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271339 12 - 181584905 CTGTTTGCTCGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277745 12 -   1764207 CTGTTTGCTTGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282883 12 -  16742782 CTGTTTGCTCGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584980 12 -  91010382 CTCTTTGCTCGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180752 12 -    438239 CTGTTTGCTCGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209285 12 -    514179 CTGTGTGCTCGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203865633 12 + 204313951 CCATTTGCTTAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024164 12 +  16417988 CCATTTGCTTAC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25437663 12 -  25620257 CCATCTGCTTAC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1890907 12 -   2165740 CAGTCTGCTCAC
i otoGar3.GL873745         I 17 C 0
s canFam3.chr34             11728761 12 +  42124431 CTGTGCACTCAC
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      107411 1237 +    298490 I

a score=2349106.000000
s hg38.chr5_KI270793v1_alt     84160 252 +    126136 TCTC-GGGGACGAATGTGCCAGGCTCCACCTGT--GAA-----CCC--ACATCTGACCCAGCTCTCTGCTAGGGCAGCGCCTGCCCTCCCTACT----CTGCCTGTGTGATTTTAAAGCCTATGAAAATTAAACAGGAAGTGGAAGTGGAAGT----GAGAC-CAGCCCCTCCCACGGCCTCACGGGCAGAGCACTGGGCTGGGGCTTCGCGGCTGCGTTTACTT-CC-CCAAACCTTCACCTTCCTCCAATGAGCAAGGTTGGCTAAAGGTA
s panTro5.chr5             181347888 252 - 181907262 TCTC-GGGGACGAATGTGCCAGGCTCCACCTGT--GAA-----CCC--ACATCTGACCCAGCCCTCTGCTAGGGCAGCGCCTGCCCTCCCTAAT----CTGCCTGTGTGATTTTAAAGCCTAtggaaattaaacgggaagtggaagtggaagt----gAGAC-CAGCCCCTCCCACGGCCTTAGGGGCAGAGCACTGGGCTGGGGCTTCGCGGCTGCGTTTACTT-CC-CCAAACCTTCACCATCTTCCAATGAGCAAGGCTGGCTAAAGGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183064845 252 - 183735486 TCTC-GGGGACGAATGTGCCAGGCTCCACCTGT--GAA-----CCC--ACATCTGACCCAGCCCTCTGCTAGGGCAGCGCCTGCCCTCCCTAAT----CTGCCTGTGTGATTTTAAAGCCTATGAAAATTAAACGGGAAGTGGAAGTGGAAGT----GAGAC-CAGCCCCTCCCACGGCCTTACGGGCAGAGCACTGGGCTGGGGCTTTGCGGCTGCGTTTACTT-CC-CCAAACCTTCACCTTCTTCCAATGAGCAAGGCTGGCTAAAGGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154277 252 +    698298 TCTC-GGGGACGAATGTGCCAGGCTCCACCTGT--GAA-----CCC--ACATCTGACCCAGCCCTCTGCTAGGGCAGCGCCTGCCCTCCCTACT----CTGTCTGTGTGATTTTAAAGCCTGTGAAAATTAAACGGGAAGTGGAAGTGGAAGT----GAGAT-CAGCCCCTCCCACGGCCTTACGGGCAGAGCACTGGGCTGGGGCTTCGCGGCTGCGTTTACTT-CC-CCAAACCTTCACCTTCTTCCAATGAGCAAGGCTGGCTAAAGGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581235 252 - 121039945 TCTC-GGGGACGAATGTGCCAGACTCCACCTGT--GAA-----TCC--CCATCTGACCCAGCCCTCAGCTAGGGCAGCGCCCGCCCTCCCTACT----CTGCCTGTGTGATTTTAAAGCCTAtgaaaattaaacgggaagtgaaagtggaagt----gaGAC-CAGCCCCTCCCACGGCCTTACAGGCAGAGCACTGGGCTAGGGCTTCGAGGCTGCGTTTACTT-CC-CCAAACCTTCACCTCCTTCCAATGAGCAAGGCTGGCTAAAGGTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538199 252 - 180051392 TCTC-GGGGATGGATGAGCCAGGCTCCATCTGT--GAA-----CCT--GCATCTGACCCAGCCCTCTGGTAGGGCGGCGCCCGCCCTCCCCACT----CTGCCTGTGTGATTTCAAAGCCTGTGAAAATTAAACGAGGAGTGGAAGTGGAAGT----GAGGC-CGGCTCTTCCCACGGCCTTGCGGGCAGAGCACAGGGCTGGGGCTTCGCGGCTGCATTTACTT-CC-CCAAACCTTCACCTCCTTCCAATGAGCACGGCCAGCTAGAGGTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271351 252 - 181584905 TCTC-GGGGATGGATGAGCCAGGCTCCATCTGT--GAA-----CCT--GCATCTGACCCAGCCCTCTGGTAGGGCGGCGCCCGCCCTCCCCACT----CTGCCTGTGTGATTTCAAAGCCTGTGAAAATTAAACGAGGAGTGGAAGTGGAAGT----GAGGC-CGGCTCTTCCCACGGCCTTGCGGGCAGAGCACAGGGCTGGGGCTTCACGGCTGCATTTACTT-CC-CCAAACCTTCACCTCCTTCCAATGAGCACGGCCAGCTAGAGGTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      277757 252 -   1764207 TCTC-GGGGATGGATGTGCCAGGCTCCATCTGT--GAA-----CCT--GCATCTGACCCAGCCCTCTGGTAGGGCGGCGCCCGCCCTCCCCACT----CTGCCTGTGTGATTTCAAAGCCTGTGAAAATTAAACGAGGAGTGGAAGTGGAAGT----GAGGC-CGGCTCTTCCCACGGCCTTGCGGGCAGAGCACAGGGCTGGGGCTTCGCGGCTGCATTTACTT-CC-CCAAACCTTCACCTCCTTCCAATGAGCACGGCCAGCTAGAGGTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      282895 252 -  16742782 TCTC-GGGGATGGATGTGCCAGGCTGCATCTGT--GAA-----CCT--GCATCTGACCCAGCCCTCTGGTAGGGCGGCGCCCGCCCTCCCCGCT----CTGCCTGTGTGATTTTAAAGCCTATGAAAATTAAACGAGGAGTGGAAGTGGAAGT----GAAGC-CGGCTCTTCCCACGGCCTTGCGGGCAGAGCACAGGGCTGGGGCTTCGCGGCCGCATTTACTT-CC-CCAAACCTTCACCTCCTTCCAATGAGCACGGCCAGCTAGAGGTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90584992 252 -  91010382 TCTC-GGGGATGGATGTGCCAGGCTCCATCTGT--GAA-----CCT--GCATCTGACCCAGCCCTCTGCCAGGGCGGCGCCCGCCCTCCCCGCT----CTGCCTGTGTCACTTTAAAGCCTATGAAAATTAAACGAGGAGTGGAAGTGGAAGT----GAGGC-CGGCTCTTCCTACGGCCTTGCGGGCAGAGCACAGGGCTGGGGCTTCGCGGCTGCATTTACTT-CC-CCAAACCTTCACCTCCTTCCAATGAGCACGGCCAGCTAGAGGTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      180764 252 -    438239 TCTC-GGGGATGGATGTGCCAGGCTGCATCTGT--GAA-----CCT--GCATCTGACCCAGCCCTCTGGTAGGGCGGCGCCCGCCCTCCCCGCT----CTGCCTGTGTGATTTTAAAGCCTATGAAAGTTAAACGAGGAGTGGAAGTGGAAGT----GAAGC-CGGCTCTTCCCACGGCCTTGCGGGCAGAGCACAGGGCTGGGGCTTCGCGGCTGCATTTACTT-CC-CCAAACCTTCGCCTCCTTCCAATGAGCACGGCCAGCTAGAGGTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209297 252 -    514179 TCTC-GGGGATGGAGGTGCCAGGCTCCATCTGT--GAA-----CCT--GCATCTGACCCAGCCCTCTGCTAGGGTGGCGCCCGCCCTCCCGACT----CTGCCTGTGTGATTTTAAAGCCTATGAAAATTAAACGAGGAGTGGAAGTGGAAGT----GAGGC-CAGCTCTTCCCACGGCCTTTCGGGCACAGCGCAGGGCTGGGGCTTCGCAGTTGCATTTACTT-CC-CCAAACCTTCACCTCCTTCCAATGAGCAAGGCCAGCTAGAGGTA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203865645 247 + 204313951 TCTCTGGGGATGGATGTGCCAGGCTCCGCGTGT--GAA-----CCC--ACCTCTGACCCAGCCCTCTGCTAGGGTGGCGCCCGCCCTCCCCACC----CTGCTTGCGTGATTTTAAAGTGTATGAAAATTAAACGCAGAGTGGGA------GT----GAGGC-CGGCCTCTCCCACGGCCTGGCCGGCAGAGCACTGGGCTAGAGCTTTGCGGCTGCGTCTAAGT-CC-CCAAACCTTCACCTCCTTCCAGTAAGCAAGGTCGGCTAAAGGTA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024176 240 +  16417988 TCTCCGGGGATGGATGTGGCAGGCTCCGCATGT--GAA-----CCC--ACATCTGACCCAGCCCTCTGCTAGGGTGGTGCCCGCCCTCCCCACC----CTGCGTGCATGATTTTAAAGCGTGTGAAAATTAAATGAGGAGTGGAAGGGGACGT----GTGGC-CGGCCTCCCCCACG--------------GCACTGGGCTGGAGCTTCGCGGCCGCGTCCACGTCCC-CCAAACCTTCACCTCCTTCCAGTGAGCAAGGTCGGCTGAAGGTA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      108648 252 +    298490 TCTC-AGGGATGGATGTGCCAGGCTCTGCGTGT--GAA-----CCC--ACGTCTGACCCAGCCCTCTGCTAGGGTGGCACCCGCCCTCCCCACC----CCACCTGCACGATTTTAAAGTGTATGAAAATTCAACGAGGAGTGGAAGTGGAAGT----GAGGC-CGGCCTCT-CCGCGGCCCGGCCGGCTGAGCTCTGGGCTGGAGCTTCGCGGCTGCGTCTACGCCCC-CCAAACCTTCACCTCCTTCCAGTGAGCGAGGTTGGCTAAAGGTA
i cebCap1.NW_016108158v1   I 1237 I 133
s aotNan1.NW_018503740v1    25437675 210 -  25620257 TCTCCGGGGATGGATGTGCCAGGCTCGGCGTGT--GAA-----CCC--ACATCTGACCCAGCCCTCTGCTAGGGTGGCGCCCGCCCTCCCCACC----CTGCCTGC--------------------------ACGAGGAGTGGAAGTGGAAGT----GAGGC-CGGCCTCTCCCACGGCCTGGCCGGCAGAGCACGGGGCTGGAGCTC------------------CC-CCAAACCTTCACCTCCTTCCAATGAGCAAGGTCGGCTAAAGGTA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1890919 240 -   2165740 -CTT-CCAGGCAAAGGCACCAGGCTCCGTGTGT--GAAGAAGTCCC--ATGTCTGATCTTCCCAACAGCT---GCAGGGGCTGCCCCCCCTGCT----CCACTGGCATGATTT-AAAGCACATAAAAATTAAACAAGGTGAGAAAGT-GAAGT----GAGGCACCACCCCTCCTGTGGGCTCCCCGGCA------------GGAGCTTTGCAGCTATTTACACTT-CC-CTGACCTCTTACCTTCTTGCAGTGTGGGAAGCCTGCTGAAGTTA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11728773 205 +  42124431 TCTC-AGGGGGTGGGATGCCAGGCTCCATGTGCTGGAA-----CCCCAGCATCTGAT---------------GGC--TGCCCCACCTGCCCACTTGTGCTACTCACACGCCTGCAGGCCACACAAACAGTGCAC-AGGAGGGGAAGCAGGAGTTGCAGGGGA-CA-----------GGCCCTGAGGG---------GTGCTGG-----TGTGGACGCCCCCACTC-CAGCCAGCCCTTCACCTCCTC---AGGAGCCAG--------------
i canFam3.chr34            C 0 C 0

a score=334709.000000
s hg38.chr5_KI270793v1_alt     84412 39 +    126136 ATGCGGTCGTAAAATGATTTCCGGATCTTCTGAAATCCC
s panTro5.chr5             181348140 39 - 181907262 ATGCGGTCGTAAAATGATTTCCGGATCTTCTGAAATCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065097 39 - 183735486 ATGCGGTCGTAAAATGATTTCCGGATCTTCTGAAATCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154529 39 +    698298 ACGCGGTCGTAAAATGATTTCCGGATCTTCTGAAATCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581487 39 - 121039945 ACGCAGTCGTAAAATGATTTCCGGATCTTCTGAAATCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538451 38 - 180051392 AT-CGGTCGTAAAATGATTTCCGGATCTTCTGAAATCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271603 38 - 181584905 AT-CGGTCGTAAAATGATTTCCGGATCTTCTGAAATCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278009 38 -   1764207 AT-CGGTCGTAAAATGATTTCCGGATCTTCTGAAATCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283147 38 -  16742782 AT-CGGTCGTAAAATGATTTCCGGATCTTCTGAAATCCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585244 38 -  91010382 AT-CGGTCGTAAAATGATTTCCGGATCTTCTGAAATCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181016 38 -    438239 AT-CGGTCGTAAAATGATTTCCGGATCTTCTGAAATCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209549 39 -    514179 ACACGGTCGTAAAATGATTTCCAGATCTTCTGAAATCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203865892 39 + 204313951 ACTCGGTTGTAAAATGATTTCCTGATCTCCTGGAGTCCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024416 39 +  16417988 ACTCAGTCGTAAAACGATTTCCGGATCTCCTGGAATCCC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25437885 39 -  25620257 ACTCAGTCGTAAAATGATTTCCGGATCTCCTGGAATCCC
i aotNan1.NW_018503740v1   C 0 I 52
s otoGar3.GL873745           1891159 33 -   2165740 ATTTGGCTAGAAAATGATTTCTGGATCTTCTAG------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11728978 27 +  42124431 ----------AAAGTGATGTTGGGGTCCTCGGG--TCCG
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      108900 133 +    298490 I

a score=70782.000000
s hg38.chr5_KI270793v1_alt     84451 11 +    126136 CGACAGGAGCC
s panTro5.chr5             181348179 11 - 181907262 CGACAGGAGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065136 11 - 183735486 CGACAGGAGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154568 11 +    698298 CGACAGGAGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581526 11 - 121039945 CGACAGGAGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538489 11 - 180051392 CGACAGGAGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271641 11 - 181584905 CGACAGGAGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278047 11 -   1764207 CGACAGGAGCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283185 11 -  16742782 CGACAGGAGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585282 11 -  91010382 CGACAGGAGCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181054 11 -    438239 CGACAGGAGCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209588 11 -    514179 CAACAGGATCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203865931  9 + 204313951 GGGCAGCAG--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024455  9 +  16417988 CGGCAGCAG--
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1891192  8 -   2165740 -GCCAGGAA--
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11729005 11 +  42124431 AGACAGGAGCT
i canFam3.chr34            C 0 I 73
e aotNan1.NW_018503740v1    25437924 52 -  25620257 I
e cebCap1.NW_016108158v1      108900 133 +    298490 I

a score=425362.000000
s hg38.chr5_KI270793v1_alt     84462 72 +    126136 TGTGGTCTGGAAAGCTGTTGCGCTGGCCTGGACCGTGGGCTTGGAGGATGGATGGGCTCCCACCCACGGTCC
s panTro5.chr5             181348190 72 - 181907262 TGTGGTCTGGAAAGCTGTTGCGCTGGCCTGGACCGTGGGCTTGGAGGATGGATGGGCTCCCACCCACGGTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065147 72 - 183735486 TGTGGTCTGGAAAGCTGTTGCGCTGGCCTGGACCGTGGGCTTGGAGAATGGATGGGCTCCCACCCACGGTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154579 72 +    698298 TGTGGTCTGGAAAGCTGTTGCGCTGGCCTGGACCGTGGGCTTGGAGGATGGATGGGCTCCCACCCACGGCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581537 66 - 121039945 TGTGGTCTGGAAAGCTG------TGGTCTGGACCGTGGGCTTGGAGGATGGACGGACTCCCACCCATGGTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538500 72 - 180051392 TGTGGTCTGGAAAGCTGTTGCGGTGGCCTGGACCGTGGGCTCAGAGGATGGACAGGCTCCCACCCTCGGTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271652 72 - 181584905 TGTGGTCTGGAAAGCTGTTGCGGTGGCCTGGACCGTGGGCTCAGAGGATGGACAGGCTCCCACCCTCGGTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278058 72 -   1764207 TGTGGTCTGGAAAGCTGTTGCGGTGGCCTGGACCGTGGGCTCAGAGGATGGACAGGCTCCCACCCTCGGTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283196 72 -  16742782 TGTGGTCTGGAAAGCTGTTGCGGTGGCCTGGACCGTGGGCTCAGAGGATGGACAGGCTCCCACCCACGGTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585293 72 -  91010382 TGTGGTCTGGAAAGCTGTTGCGGTGGCCTGGACCGTGGGCTCAGAGGATGGACAGGCTCCCACCCACGGTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181065 72 -    438239 TGTGGTCTGGAAAGCTGTTGCGGTGGCCGGGACCGTGGGCTCAGAGGATGGACAGGCTCCCACCCACGGTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209599 72 -    514179 TGTGGTCTGGAAAGCTGTTGTGGTGGCCTGGACCGTGGGCTCAGAGGATGGACAGGCTCCCACCCACGGTCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203865940 57 + 204313951 -------TCGGAAGCTGTCAACGCGGACC------CGTGCTTGGCGGATGGATGTGCTCCCACCCA--ATCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024464 57 +  16417988 ------TTCGGAAGCTGTGGCTGCAGACC------CTGGCGT-GCGGATGGAGGCACTCCCACCCA--GTCC
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1891200 33 -   2165740 ---------GCAAG---------TGGCCT-GACCACATGCTCTGAGGATGGG--------------------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25437924 52 -  25620257 I
e cebCap1.NW_016108158v1      108900 133 +    298490 I
e canFam3.chr34             11729016 73 +  42124431 I

a score=395133.000000
s hg38.chr5_KI270793v1_alt     84534 61 +    126136 CATTTGCCAATTGTTCCTGGCAGTTAGTCACCCCCTGGCTGATGAGGACGTGGTAAACCAC
s panTro5.chr5             181348262 61 - 181907262 CATTTGCCAATTGTTCCGGGCAGTTAGTCACCCCCTGGCTGATGAGGACGTGGTAAACCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065219 61 - 183735486 CATTTGCCAATTGTTCCTGGCAGTTAGTCACCCCCTGGCTGATGAGGACGTGGTAAACCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154651 61 +    698298 CATTTGCCAATTGTTCCTGGTAGTTAGTCACCCCCTGGCTGATGAGGACGTGGTAAACCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581603 61 - 121039945 CATTTGCCAATTGTTCCTGGCAGTTAGTCACCCCCTGGCTGATGAGGACGTGGTAAACCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538572 61 - 180051392 CATTTGCCAGTGGTTCCTGGCAGTTGGTCGCCCCCTGACTGATGAGGACGTGGTAAACCAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271724 61 - 181584905 CATTTGCCAGTGGTTCCTGGCAGTTGGTCGCCCCCTGACTGATGAGGACGTGGTAAACCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278130 61 -   1764207 CATTTGCCAGTGGTTCCTGGCAGTTGGTCGCCCCCTGACTGATGAGGACGTGGTAAACCAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283268 61 -  16742782 CATTTGCCAGTGGTTCCTGGCAGTTGGTCGCCCCGTGACTGATGAGGACGTGGTAAACCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585365 61 -  91010382 CATTTGCCAATGGTTCCTGGCAGTTGGTCGCCCCCTGACTGATGAGGACGCGGTAAACCAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181137 61 -    438239 CATTTGCCAGTGGTTCCTGGCAGTTGGTCGCCCCGTGACTGATGAGGACGTGGTAAACCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209671 61 -    514179 CATTTGCCAGTGGTTCCTGGCAGTTCGTCGCCCCCTGACTGATGAGGATGTGGTAAACCGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203865997 29 + 204313951 CATCTGCTAGTTGTTCCTGG------------------CTGATGAGG--------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024521 29 +  16417988 CGTCTGCTAGTTGTTCCTGG------------------CCGATGAGG--------------
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1891233 57 -   2165740 CTTTTGCTGGTCACTTCTGGCAGTCAGCTATTTCTCCTCT----AGGATGCTGAGAACCAC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11729089 60 +  42124431 CAACATCTAGTTGTTTTCGACAGGTGATCATTCCTTTGCTGA-GAAGACGGGGTAAGCCGC
i canFam3.chr34            I 73 C 0
e aotNan1.NW_018503740v1    25437924 52 -  25620257 I
e cebCap1.NW_016108158v1      108900 133 +    298490 I

a score=258310.000000
s hg38.chr5_KI270793v1_alt     84595 34 +    126136 ACGGGGTTGAGGAGAGGAC-------GGAGCCTCGGCGTGA
s panTro5.chr5             181348323 34 - 181907262 ACGGGGTTGAGGAGAGGAC-------GGAGCCTCGGCGTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065280 34 - 183735486 ACGGGGTTGAGGAGAGGAC-------GGAGCCTCGGCGTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154712 34 +    698298 ACGGGGTTGAGGAGAGGAC-------GGAGCCTCGGCGTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581664 34 - 121039945 ATGGGGTTGAGGAGAGGAC-------GGAGGCTGGGCGTGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538633 34 - 180051392 ATGGGGCTGAGGAGACGAC-------TGAGCCTGGGTGCAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271785 34 - 181584905 ATGGGGCTGAGGAGACGAC-------TGAGCCTGGGTGCAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278191 34 -   1764207 ATGGGGCTGAGGAGACGAC-------TGAGCCTGGGTGCAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283329 34 -  16742782 GTGGGGCTGAGGAGACGAC-------TGAGCCTGGGTGCAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585426 33 -  91010382 ATGGGGCTGAGGCGACGAC-------TGAGCCT-GGTGCAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181198 34 -    438239 GTGGGGCTGAGGAGACGAC-------TGAGCCTGGGTGCAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209732 34 -    514179 ATGGGGCTGAGGAGACGAC-------TGAGCCTGGGTGCAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866026 34 + 204313951 ACAGGGTTGAGGATGGGAC-------AGAGCCTGGTCTCGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024550 34 +  16417988 ACGGGGTCGAGCAGGGCAC-------GGGGCCTGGTCGCGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      109033 34 +    298490 ACGGGGTTGAGGAGGGGAC-------GGAGCCTGGTCGCAA
i cebCap1.NW_016108158v1   I 133 C 0
s aotNan1.NW_018503740v1    25437976 34 -  25620257 ACGGGGTTGAGGAGGGGAT-------GGAGACCGGTCGCGA
i aotNan1.NW_018503740v1   I 52 C 0
s canFam3.chr34             11729149 41 +  42124431 AGGAAGCCAGCTACTGGACCAGCCCTGGGGCCTGGGTGGGA
i canFam3.chr34            C 0 I 4015
e otoGar3.GL873745           1891290  0 -   2165740 C

a score=961295.000000
s hg38.chr5_KI270793v1_alt     84629 130 +    126136 CCTCGGGCCACC-TCTGAGCCACTGAG---GGATGCAGGGCCAGGCGGGGGTCACCACAGGTGATTTTTCCCAGTGTCTGTCCTGGACCCCTCACCCCAGGCTCCAGGCAA-CTCAGCCGTGGGCCCTGCCCAGA
s panTro5.chr5             181348357 130 - 181907262 CCTCGGGCCACC-TCTGAGCCACTGAG---GGATGCAGGGCCAGGTGGAGGTCACCACGGGTGATTTTTCCCAGTGTCTGTCCTGGACCCCTCACCCCAGGCTCCAGGCAA-CTCAGCCGTGGGCCCTGCCCAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065314 130 - 183735486 CCTCGGGCCACC-TCTGAGCCACTGAG---GGATGCAGGGCCAGGCAGAGGTCACCACGGGTGATTTTTCCCAGTGTCTGTCCTGGACCCCTCACCCCAGGCTCCAGGCAA-CTCAGCTGTGGGCCCTGCCCAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154746 130 +    698298 CCTCGGGCCACC-TCTGAGCCACTGAG---GGATGCAGGGCCAGGCGGGGGTCACCACGGGTGATTTTTCCCAGTATCTGTCCTGGACCCCTCACCCCAGGCTCCAGGCAA-CTCAGCCGTGGGCCCTGCCCAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581698 130 - 121039945 CCTCAGGCCACC-CCTGAGCCACTGAG---GGACAGAGGTCCAGGCAGGGGTCACCACGGGCGATTTTTCCCAGTGTCTGTCCTGGACCCCTCACCCCAGGCTCCAGGCAG-CTCGGCCGTGGGCCCTGCCCAGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538667 114 - 180051392 CCTCGGGCCTCC-TCTGAGCCACCAAG---GGACACGGGGCCAGGCAGGGATCACCATGGGCGATTTTTCCCAGTGTCTGTCCTGGACCCTCCACCCCA-----------------GCCGTGGGCCCTGCCCAGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271819 114 - 181584905 CCTCGGGCCTCC-TCTGAGCCACCAAG---GGACACGGGGCCAGGCAGGGATCACCATGGGCGATTTTTCCCAGTGTCTGTCCTGGACCCTCCACCCCA-----------------GCCGTGGGCCCTGCCCAGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278225 114 -   1764207 CCTCGGGCCTCC-TCTGAGCCACCAAG---GGACACGGGGCCAGGCAGGGATCACCATGGGCGATTTTTCCCAGTGTCTGTCCTGGACCCTCCACCCCA-----------------GCCATGGGCCCTGCCCAGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283363 114 -  16742782 CCTCGGGCCTCC-TCTGAGCCACCAAG---GGACGCGGGGCCAGGCAGGGATCACCATGGGCGATTTTTCCCTGTGTCTGTCCTGGACCCTCCACCCCA-----------------GCCGTGGGCCCTGCCCAGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585459 114 -  91010382 CCTCGGGCCTCC-TCTGAGCCACCCAG---GGACGCGGGGCCAGGCAGGGATCACCACGGGCAATTTTTCCCAGTGTCTGTCCTGGACCCTCCACGTCA-----------------GCTGTGGGCCCTGCCCAGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181232 114 -    438239 CCTCGGGCCTCC-TCTGAGCCACCAAG---GGACGCGGGGCCAGGCAGAGATCACCATGGGCGATTTTTCCCAGTGTCTGTCCTGGACCCTCCACCCCA-----------------GCCGTGGGCCCTGCCCAGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209766 130 -    514179 CCTCGGGCCTCC-TCTGAGCCACCAAG---GGACGCGGGGCCAGGCAGGGATCCCCATGGGTGATTTTTCCCACTGTCTGTCCTGGACCCCCCACCCCAGGCTCCAGGCAA-CCCGGCCGTGGGCCCTGCCCAGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866060 129 + 204313951 ACTAGGGCCTCGTTCTGAGCCACTGTG---GGACGCAGGGCCCAGCAGAGGTCACCACGGCAA--CTTTTCCAGTGTCTGTCCCAGACCCCCAAACTTGGGCTCCAGGCAA-CTCCGCCATGAGCCCTGCCCAGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024584 128 +  16417988 CCTAGGGCCTCG-TCCGAGCCGCTGTG---GGATGCAGGGCCCGGCAGAGGTCACCACAGCCA--CCTTCCCCGTGTCTGTCCCAGACCCCCAAACTTTGGCTCCAGGCAG-CTCCGCCATGAGCCCTGCCCGGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      109067 127 +    298490 CCTAGGGCCTCG-TCTGAGCCACTGTG---GGATGCAGGGCCCGGCAGGGGTCACCACAGTGA--CTTTCCCGGTGTCTGTCCCAGACCCCCAAACTTGGGCT-CAGGCAA-CTCCGCCGTGAGCCCTGCCCAGA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25438010 131 -  25620257 CCTAGGGCCTCG-TCTGAGCCACTGTGTCCAGACGCGGGGCCCGGCAGGGGTCACCACGGTGA--CTTTCCCAGTGTCTGTCCCAGACCCCCAAACTTAGGCTCCAGGCAA-CTCCGCCGTGAGCCCTGCCCAGA
i aotNan1.NW_018503740v1   C 0 I 37
s otoGar3.GL873745           1891290  96 -   2165740 -CTGACGCTTCC-TCTGAGCCACCATG---GACTCATGTGCCTCACAGG---------------------CTGGAGTTT-------AGTCTCCATACCAGGCTCCAGGCTGCCTCATCCATG---CCTACCT---
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11729190 4015 +  42124431 I

a score=369140.000000
s hg38.chr5_KI270793v1_alt     84759 59 +    126136 GCCCCCCAGGCTCCAAGGGCACTATAGCCTTTGTGGGCCAGAGCTGCTGTCCCAGGCGT
s panTro5.chr5             181348487 59 - 181907262 GCCCCCCGGACTCCAAGGGCACTACAGCCTTTGTGGGCCAGAGCTGCTGTCCCAGGTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065444 59 - 183735486 GCCCCCCGGACTCCAAGGGCACTACAGCCTTTGTGGGCCAGAGCTGCTGTCCCAGGTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154876 59 +    698298 GCCCCCCGGGCTCCAAGGGCACTACAGCCTTTGTGGGCCAGAGCTGCTGTCCCAGGCAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581828 59 - 121039945 GACTCCCGGGCTCCAAGCACACTACAGCCTTTGTGGGCCAGAGCTGCTGTCCCGGGCGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538781 59 - 180051392 GCCCCCCGGGCTCCAAGGGCACTACAGCCTTCATGGGCCAGAGCTGCTGTCCCAGGCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271933 59 - 181584905 GCCCCCCGGGCTCCAAGGGCACTACAGCCTTCATGGGCCAGAGCTGCTGTCCCAGGCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278339 59 -   1764207 GCCCCCCGGGCTCCAAGGGCACTACAGCCTTCATGGGCCAGAGCTGCTGTCCCAGGCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283477 59 -  16742782 GCCCCCCGGGCTCCAAGGGCACTACAGCCTTCGTGGGCCAGAGCTGCTGTCCCAGGCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585573 59 -  91010382 GCCCCCCGGGCTCCAAGGGCACTGCAGCCTTCGTGGGCCAGAGCTGCCGTCCCAGGCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181346 59 -    438239 GCCCCCCGGGCTCCAAGGGCACTACAGCCTTCGTGGGCCAGAGCTGCTGTCCCAGGCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209896 59 -    514179 GCCCCCCGGGCTCCAAGGGCACTACAACCTTCATGGGCCAGAGCTGCTGTCCCAGGCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866189 36 + 204313951 GCCC-----------------------CCTTCGTGGGACAGAGCTGCCATCCTGGACAT
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16024712 35 +  16417988 GCCC-----------------------CCTTCGTGGGCCGGAGCCG-CGTCCTGGGCAT
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1      109194 36 +    298490 GTCC-----------------------CCTTCGTGGGCCAGAGCTGCCATCCTGGACGT
i cebCap1.NW_016108158v1   C 0 I 1
s otoGar3.GL873745           1891386  7 -   2165740 ------------------------------------------GCTGCTC----------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438141 37 -  25620257 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=1018837.000000
s hg38.chr5_KI270793v1_alt     84818 125 +    126136 GTGCTCAGGACCCTCAAAGACCTGGCTTTCCTGTCCTGCCATTGTCCTGGGGACCTCAAATGCCCACAGGGTGATGCCCCAGAACCCTTGCATCCTCCTCCATAGCCCAGCTCCCTCTGGCCTCC
s panTro5.chr5             181348546 124 - 181907262 GTGCTCAGGACCCTCAAAGACCTGGCTTTCCTGTCCCGCCATTGTCCTGGGGACCTCAAACGCCCACAGGGTGATGCCCCAGAACCCTAGCACCCTCCTCCATAG-CCAGCTCCCTCTGGCCTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065503 124 - 183735486 GTGCTCAGGACCCTCAAAGACCTGGCTTTCCTGTCCCGCCATTGTCCTGGGGACCTCAAACGCCCACAGGGTGATGCCCCAGAACCCTAGCACCCTCCTCCATAG-CCAGCTCCCTCTGGCCTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      154935 125 +    698298 GTGCTCAGGACCCTCAAAGACCTGGCTTTCCTGTCCTGCCATTGTCCTGGGGACCTCAAATGCCCACAGGGTGATGCCCCAGAACCCTTGCATCCTCCTCCATAGCCCAGCTCCCTCTGGCCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120581887 124 - 121039945 GTGCTCAGGAGCCTCGAAGACCTGGCCTTCCTGTCCTGCCATTGTCCT-GGGACCTCAGATGCCCACAGGGTGATGCCCCCGAACCCTTGCACCCTCCTCCCTAGCCCAGCTCCCTCTGGCCTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538840 115 - 180051392 GTGCTC----------AAGACCTGGCCTTCGTGTCCTGCCCTTGTCCTGGGGACCTCAAATGCCCACAGGGTGATGCCCCAGAACCCGTGCACCCTCCTCCCTAGCCTGGCTCCCTCTGGCCTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181271992 115 - 181584905 GTGCTC----------AAGACCTGGCCTTCGTGTCCTGCCCTTGTCCTGGGGACCTCAAATGCCCACAGGGTGATGCCCCAGAACCCGTGCACCCTCCTCCCTAGCCTGGCTCCCTCTGGCCTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278398 115 -   1764207 GTGCTC----------AAGACCTGGCCTTCGTGTCCTGCCCTTGTCCTGGGGACCTCAAATGCCCACAGGGTGATGCCCCAGAACCCGTGCGCCCTCCTCCCTAGCCTGGCTCCCTCTGGCCTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283536 115 -  16742782 GTGCTC----------AAGACCTGGCCTTCGTGTCCTGCCCTTGTCCTGGGGACCTCAAATGCCCACAGGGTGATGCCCCAGAACCTGTGCACCCTCCTCCCTAGCCTGGctccctctggcctcc
i cerAty1.NW_012009470v1   C 0 I 102
s chlSab2.chr4              90585632 115 -  91010382 GTGCTC----------AAGACCTGGACTTCGTGTCCTGCCCTTGTCTTGGGGACCTCAAATGCCCACAGGGTGATGCCCCAGAACCCGTGCACCCTCCTCCCTAGCCTGGCCCCCTCTGGCCTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181405 115 -    438239 GTGCTC----------AAGACCTGGCCTTCGTGTCCTGCCCATGTCCTGGAGACCTCAAATGCCCACAGGGTGATGCCCCAGAACCTGTGCACCCTCCTCCCTAGCCTGGCTCCCTCTGGCCTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      209955 114 -    514179 GTGCTC----------AAGACCTGGCCTTCGTGTCCTGCCCTTGTCCTGGGGACCTCAAATGCCCACAGGGTGATGCCCCAGAACCCGTGCACCCTCCT-CCTAGCCTGGCTCCCTCTGGCTTCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866226 113 + 204313951 GTGCTCAGGACCCTCGAAGACCTGGCCTTC-TGTCCCCCCATTGTTCTGGGAACCTCAAATGCCCACAGGGTGATGCCCCGGAACCCTTGCACCCTCCTCGCTGGCCTGGC-----------TCC
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16024748 118 +  16417988 GTGCTCAGGACCCTCGAAGA-----CCTTC-TGTCCCACCATTGTTCTGGGGACCTCAAATGCCCACAGGGTGACGCCCCGGAACACTTGCACCCTCCTCCCTGGCCTGGCTCCC-CTGGCTTCC
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1      109231 119 +    298490 GTGCTCAGGACCCTCGAAGA-----CCTTC-TGTCCCACCATTGTTCTGGGGACCTCAAATGCCGACAGGGTGATGCCCCGGAACCCTTGCACCCTCCTCCCTGGCCTGGCTCCCTCTGGCCTCC
i cebCap1.NW_016108158v1   I 1 I 241
s aotNan1.NW_018503740v1    25438178 123 -  25620257 GTGCTCAGGACCCTCGAAGACCTGGCCTTC-TGTCCCACCATTGTTCTGGGGACCTCAAATGCCCACAGGGTGACGCCCCGGAAT-CTTGCCCCCTCCTCCCTGGCCTGGCTCCCTCTGGCCTCC
i aotNan1.NW_018503740v1   I 37 C 0
s otoGar3.GL873745           1891393  84 -   2165740 ATGCTC-----CCTCAAGTA-----CATCCCAGGCCAGCC-------------------AGGCCCACAAGGCAGTCCCTCAGCTCCAGTGTACC------------CCAGGGAAAGCTGGTCAGA
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11729190 4015 +  42124431 I

a score=149785.000000
s hg38.chr5_KI270793v1_alt     84943 24 +    126136 GCTGTAGCCTCAACCTCAGGCTCT
s panTro5.chr5             181348670 24 - 181907262 GCTGTAGCCTCAACCTCAGGCTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065627 24 - 183735486 GCTGTAGCCTCAACCTCAGGCTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155060 24 +    698298 GCTGTAGCCTCAACCTCAGGCTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582011 24 - 121039945 CCTATAGCCTCAACCCCAGGCTCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538955 24 - 180051392 GCTACAGCCTCAACCCCAGGCTCT
i rheMac8.chr6             C 0 I 16
s macFas5.chr6             181272107 24 - 181584905 GCTACAACCTCAACCCCAGGCTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278513 24 -   1764207 GCTACAGCCTCAACCCCAGGCTCT
i macNem1.NW_012012389v1   C 0 I 16
s chlSab2.chr4              90585747 24 -  91010382 GATACAGCCTCAACCCCAGGCTCT
i chlSab2.chr4             C 0 I 16
s manLeu1.NW_012110441v1      181520 24 -    438239 GCTACAGCCTCAACCCCAGGCTCT
i manLeu1.NW_012110441v1   C 0 I 16
s colAng1.NW_012118799v1      210069 24 -    514179 GCTACAGCCTCAACCCCAGGCTCT
i colAng1.NW_012118799v1   C 0 I 16
s calJac3.chr2             203866339 23 + 204313951 ACTA-AGCCCCAACCCCAGGCTCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024866 19 +  16417988 ACTA-AGCCCCAATCCCAGG----
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25438301 23 -  25620257 ACTA-AGCCCCAACCCCAGGCTCT
i aotNan1.NW_018503740v1   C 0 I 6
s otoGar3.GL873745           1891477 19 -   2165740 GCTGCTGTC-----CCCAGAGTTC
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e canFam3.chr34             11729190 4015 +  42124431 I
e cerAty1.NW_012009470v1      283651 102 -  16742782 I

a score=5865.000000
s hg38.chr5_KI270793v1_alt     84967 4 +    126136 TGGG
s panTro5.chr5             181348694 4 - 181907262 TGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065651 4 - 183735486 TGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155084 4 +    698298 TGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582035 4 - 121039945 TGGG
i nomLeu3.chr6             C 0 C 0
s otoGar3.GL873745           1891496 4 -   2165740 TGGG
i otoGar3.GL873745         C 0 I 118
e aotNan1.NW_018503740v1    25438324 6 -  25620257 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024885 0 +  16417988 C
e calJac3.chr2             203866362 0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181544 16 -    438239 I
e chlSab2.chr4              90585771 16 -  91010382 I
e cerAty1.NW_012009470v1      283651 102 -  16742782 I
e colAng1.NW_012118799v1      210093 16 -    514179 I
e macNem1.NW_012012389v1      278537 16 -   1764207 I
e macFas5.chr6             181272131 0 - 181584905 C
e rheMac8.chr6             179538979 16 - 180051392 I

a score=12105.000000
s hg38.chr5_KI270793v1_alt     84971 12 +    126136 TGTGTGGCTCCT
s panTro5.chr5             181348698 12 - 181907262 TGTGTGTCTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065655 12 - 183735486 TGTGTGTCTCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155088 12 +    698298 TGTGTGGCTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582039 12 - 121039945 TGCGTGGCTCCC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181272131  6 - 181584905 ------GCTCCT
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203866362  6 + 204313951 ------GCTCCT
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25438324  6 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024885  0 +  16417988 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181544 16 -    438239 I
e chlSab2.chr4              90585771 16 -  91010382 I
e cerAty1.NW_012009470v1      283651 102 -  16742782 I
e colAng1.NW_012118799v1      210093 16 -    514179 I
e macNem1.NW_012012389v1      278537 16 -   1764207 I
e rheMac8.chr6             179538979 16 - 180051392 I

a score=46065.000000
s hg38.chr5_KI270793v1_alt     84983 34 +    126136 GCCTGGGGCCCACTGAGCCCTCAGCTGCACCAGG
s panTro5.chr5             181348710 34 - 181907262 GCCTGGGGCCCACTGAGCCCTCAGCTGCACCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065667 34 - 183735486 GCCTGGGGCCCACTGAGCCCTCAGCTGCACCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155100 34 +    698298 ACCTGGGGCCCACTGAGCCCTCAGCTGCACCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582051 34 - 121039945 GCCTGGGGCCCACTGAGCCCTGAGCCGCACCAGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6                311999 34 + 181584905 GCCTGGGACCCACTGAGCCCTGAGCTGCACCAGG
i macFas5.chr6             T 9991 n 0
e aotNan1.NW_018503740v1    25438324  6 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024885  0 +  16417988 C
e calJac3.chr2             203866368  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181544 16 -    438239 I
e chlSab2.chr4              90585771 16 -  91010382 I
e cerAty1.NW_012009470v1      283651 102 -  16742782 I
e colAng1.NW_012118799v1      210093 16 -    514179 I
e macNem1.NW_012012389v1      278537 16 -   1764207 I
e rheMac8.chr6             179538979 16 - 180051392 I

a score=15835.000000
s hg38.chr5_KI270793v1_alt     85017 10 +    126136 CCTTGGGTGT
s panTro5.chr5             181348744 10 - 181907262 CCTTGGGTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065701 10 - 183735486 CCTTGGGTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155134 10 +    698298 CCTTGGGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582085 10 - 121039945 CGTTGGGTGT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181272137 10 - 181584905 CCTTGGGCCG
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203866368 10 + 204313951 CCTTGAGAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024885  4 +  16417988 ------GAGG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25438330 10 -  25620257 CCTTGGGAGG
i aotNan1.NW_018503740v1   I 6 C 0
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181544 16 -    438239 I
e chlSab2.chr4              90585771 16 -  91010382 I
e cerAty1.NW_012009470v1      283651 102 -  16742782 I
e colAng1.NW_012118799v1      210093 16 -    514179 I
e macNem1.NW_012012389v1      278537 16 -   1764207 I
e rheMac8.chr6             179538979 16 - 180051392 I

a score=301850.000000
s hg38.chr5_KI270793v1_alt     85027 41 +    126136 CTCCAACTAAGCCCAGCACCAGCTCCGACACTGTTGTCCTA
s panTro5.chr5             181348754 41 - 181907262 CTCCAACTAAGCCCAGCACCAGCTCCGACACTGTTGTCCTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065711 41 - 183735486 CTCCAACTAAGCCCAGCACCAGCTCCGACACTGTTGTCCTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155144 41 +    698298 CTCCAACTAAGCCCAGCACCAGCTCCGACACTGTTGTCCTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582095 41 - 121039945 CTCCAACTAAGTCCAGCGCTGGCTCTGACACTGTTGTCCTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179538995 41 - 180051392 CTCCAACTAAGCCCAACGCCGGCTCCCACGCTGTTGTCCTA
i rheMac8.chr6             I 16 C 0
s macFas5.chr6             181272147 41 - 181584905 CTCCAACTGAGCCCAACGCCGGCTCCCACGCTGTTGTCCTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278553 41 -   1764207 CTCCAACTAAGCCCAACGCCGGCTCCCACGCTGTTGTCCTA
i macNem1.NW_012012389v1   I 16 C 0
s cerAty1.NW_012009470v1      283753 41 -  16742782 CTCCAACTAAGCCCGACACCGGCTCCCACGCTGTTGTCCTA
i cerAty1.NW_012009470v1   I 102 C 0
s chlSab2.chr4              90585787 41 -  91010382 CTCCAACTAAGCCCAACGCCGGCTCCCACGCTGTTGTCCTA
i chlSab2.chr4             I 16 C 0
s manLeu1.NW_012110441v1      181560 41 -    438239 CTCCAACTAAGCCCAACGCCAGCTCCCACGCTGTTGTCCTA
i manLeu1.NW_012110441v1   I 16 C 0
s colAng1.NW_012118799v1      210109 41 -    514179 CTCCAACTAAGCCCAGCGCCAGCTCCCACACTGTTGTCCTA
i colAng1.NW_012118799v1   I 16 C 0
s calJac3.chr2             203866378 28 + 204313951 CTCCA-TTAAGCCCAACG------------AGGTTGTTCTA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024889 40 +  16417988 CTCCAGCTAAGCCCAGCGCCGGCTCCGAC-GTGGTGTTCTG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25438340 41 -  25620257 CTCCAACTAAGCCCAGCGCCGACTCCGACATGGTTGTTCTA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=21385.000000
s hg38.chr5_KI270793v1_alt     85068 18 +    126136 TTTCCCCACTTTACCATC
s panTro5.chr5             181348795 18 - 181907262 TTTCCCCACTTTACCATC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065752 18 - 183735486 TTTCCCCACTTTACCATC
i panPan2.chr5             C 0 I 21
s gorGor5.CYUI01015805v1      155185 18 +    698298 TTTCCCCACTTTACCATC
i gorGor5.CYUI01015805v1   C 0 I 50
s saiBol1.JH378155          16024929 18 +  16417988 TTTCCCCACCTGACCGTT
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25438381 18 -  25620257 TTTCCCCACCTGACCATT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e calJac3.chr2             203866406  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e nomLeu3.chr6             120582136  0 - 121039945 C
e manLeu1.NW_012110441v1      181601  0 -    438239 C
e chlSab2.chr4              90585828  0 -  91010382 C
e cerAty1.NW_012009470v1      283794  0 -  16742782 C
e colAng1.NW_012118799v1      210150  0 -    514179 C
e macNem1.NW_012012389v1      278594  0 -   1764207 C
e macFas5.chr6             181272188  0 - 181584905 C
e rheMac8.chr6             179539036  0 - 180051392 C

a score=7730.000000
s hg38.chr5_KI270793v1_alt     85086 8 +    126136 CTTGGGAC
s panTro5.chr5             181348813 8 - 181907262 CTTGGGAC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155253 8 +    698298 CTTGGGAC
i gorGor5.CYUI01015805v1   I 50 C 0
s saiBol1.JH378155          16024947 8 +  16417988 CTTGGGAC
i saiBol1.JH378155         C 0 I 1
s aotNan1.NW_018503740v1    25438399 8 -  25620257 CTTGGGAC
i aotNan1.NW_018503740v1   C 0 I 26
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e calJac3.chr2             203866406 0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e nomLeu3.chr6             120582136 0 - 121039945 C
e manLeu1.NW_012110441v1      181601 0 -    438239 C
e chlSab2.chr4              90585828 0 -  91010382 C
e cerAty1.NW_012009470v1      283794 0 -  16742782 C
e colAng1.NW_012118799v1      210150 0 -    514179 C
e macNem1.NW_012012389v1      278594 0 -   1764207 C
e macFas5.chr6             181272188 0 - 181584905 C
e rheMac8.chr6             179539036 0 - 180051392 C
e panPan2.chr5             183065770 21 - 183735486 I

a score=3257.000000
s hg38.chr5_KI270793v1_alt     85094 12 +    126136 CCCAGCATCCAG
s panTro5.chr5             181348821 12 - 181907262 CCCAGCATCCGG
i panTro5.chr5             C 0 I 1
s gorGor5.CYUI01015805v1      155261 12 +    698298 CCCAGCATCCGG
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955  1 +  16417988 I
e calJac3.chr2             203866406  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e nomLeu3.chr6             120582136  0 - 121039945 C
e manLeu1.NW_012110441v1      181601  0 -    438239 C
e chlSab2.chr4              90585828  0 -  91010382 C
e cerAty1.NW_012009470v1      283794  0 -  16742782 C
e colAng1.NW_012118799v1      210150  0 -    514179 C
e macNem1.NW_012012389v1      278594  0 -   1764207 C
e macFas5.chr6             181272188  0 - 181584905 C
e rheMac8.chr6             179539036  0 - 180051392 C
e panPan2.chr5             183065770 21 - 183735486 I

a score=6099.000000
s hg38.chr5_KI270793v1_alt     85106 11 +    126136 CCCTCAGCGGC
s panTro5.chr5             181348834 11 - 181907262 CCCTCAGTGGC
i panTro5.chr5             I 1 C 0
s panPan2.chr5             183065791 11 - 183735486 CCCTCAGCGGC
i panPan2.chr5             I 21 C 0
s gorGor5.CYUI01015805v1      155273 11 +    698298 CCCTCAGCGGC
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955  1 +  16417988 I
e calJac3.chr2             203866406  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e nomLeu3.chr6             120582136  0 - 121039945 C
e manLeu1.NW_012110441v1      181601  0 -    438239 C
e chlSab2.chr4              90585828  0 -  91010382 C
e cerAty1.NW_012009470v1      283794  0 -  16742782 C
e colAng1.NW_012118799v1      210150  0 -    514179 C
e macNem1.NW_012012389v1      278594  0 -   1764207 C
e macFas5.chr6             181272188  0 - 181584905 C
e rheMac8.chr6             179539036  0 - 180051392 C

a score=58430.000000
s hg38.chr5_KI270793v1_alt     85117 44 +    126136 TTTCCCCACTTTACCATCCTTGGGACCCCAGCATCCAGCCCCTC
s panTro5.chr5             181348845 44 - 181907262 TTTCCCCACTTTACCATTCTTGGGACCCCAGCATCCGGCCCCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065802 44 - 183735486 TTTCCCCACTTTACCATTCTTGGGACCCCAGCATCCGGCCCCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155284 44 +    698298 TTTCCCCACTTTACCATTCTTGGGACCCCAGCATCCGGCCCCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582136 44 - 121039945 TTTCCCCACTTTACCGTTCTTGGGACCCCAGCTTCCGGCCCCTC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181272188 44 - 181584905 TTTCCCCACTTTACCATTCTTGGGACAGCAGCATCCGGCCCCTC
i macFas5.chr6             C 0 T 44
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955  1 +  16417988 I
e calJac3.chr2             203866406  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181601  0 -    438239 C
e chlSab2.chr4              90585828  0 -  91010382 C
e cerAty1.NW_012009470v1      283794  0 -  16742782 C
e colAng1.NW_012118799v1      210150  0 -    514179 C
e macNem1.NW_012012389v1      278594  0 -   1764207 C
e rheMac8.chr6             179539036  0 - 180051392 C

a score=1910.000000
s hg38.chr5_KI270793v1_alt     85161 2 +    126136 AG
s panTro5.chr5             181348889 2 - 181907262 AG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065846 2 - 183735486 AG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155328 2 +    698298 AG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582180 2 - 121039945 AG
i nomLeu3.chr6             C 0 T 46
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955 1 +  16417988 I
e calJac3.chr2             203866406 0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181601 0 -    438239 C
e chlSab2.chr4              90585828 0 -  91010382 C
e cerAty1.NW_012009470v1      283794 0 -  16742782 C
e colAng1.NW_012118799v1      210150 0 -    514179 C
e macNem1.NW_012012389v1      278594 0 -   1764207 C
e macFas5.chr6             181272232 44 - 181584905 T
e rheMac8.chr6             179539036 0 - 180051392 C

a score=-3993.000000
s hg38.chr5_KI270793v1_alt     85163  3 +    126136 -AGC-------------------------------------------------
s panTro5.chr5             181348891  4 - 181907262 CGGC-------------------------------------------------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065848  4 - 183735486 CGGC-------------------------------------------------
i panPan2.chr5             C 0 T 100
s gorGor5.CYUI01015805v1      155330 53 +    698298 CGGCTATCCCCACTTTACCATTCTTGGGACCCCAGCATCGGCCCCTCAGCGGC
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955  1 +  16417988 I
e calJac3.chr2             203866406  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e nomLeu3.chr6             120582182 46 - 121039945 T
e manLeu1.NW_012110441v1      181601  0 -    438239 C
e chlSab2.chr4              90585828  0 -  91010382 C
e cerAty1.NW_012009470v1      283794  0 -  16742782 C
e colAng1.NW_012118799v1      210150  0 -    514179 C
e macNem1.NW_012012389v1      278594  0 -   1764207 C
e macFas5.chr6             181272232 44 - 181584905 T
e rheMac8.chr6             179539036  0 - 180051392 C

a score=64300.000000
s hg38.chr5_KI270793v1_alt     85166 49 +    126136 TTTCCCCACTTTACCATTCTTGGGACCCCAGCATCCGGCCCCTC-AGCGG
s panTro5.chr5             181348895 49 - 181907262 TTTCCCCACTTTACCATTCTTGGGACCCCAGCATCCGGCCCCTC-AGCGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065752 49 - 183735486 TTTCCCCACTTTACCATCCTTGGGACCCCAGCATCCGGCCCCTC-AGCGG
i panPan2.chr5             T 100 C 0
s gorGor5.CYUI01015805v1      155383 49 +    698298 TTTCCCCACTTTACCATTCTTGGGACCCCAGCATCCGGCCCCTC-AGCGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582136 49 - 121039945 TTTCCCCACTTTACCGTTCTTGGGACCCCAGCTTCCGGCCCCTC-AGCGG
i nomLeu3.chr6             T 46 C 0
s macFas5.chr6             181272188 50 - 181584905 TTTCCCCACTTTACCATTCTTGGGACAGCAGCATCCGGCCCCTCGAGCGG
i macFas5.chr6             T 44 T 50
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955  1 +  16417988 I
e calJac3.chr2             203866406  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181601  0 -    438239 C
e chlSab2.chr4              90585828  0 -  91010382 C
e cerAty1.NW_012009470v1      283794  0 -  16742782 C
e colAng1.NW_012118799v1      210150  0 -    514179 C
e macNem1.NW_012012389v1      278594  0 -   1764207 C
e rheMac8.chr6             179539036  0 - 180051392 C

a score=1000.000000
s hg38.chr5_KI270793v1_alt     85215 1 +    126136 C
s panTro5.chr5             181348944 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065801 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155432 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582185 1 - 121039945 C
i nomLeu3.chr6             C 0 T 50
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955 1 +  16417988 I
e calJac3.chr2             203866406 0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181601 0 -    438239 C
e chlSab2.chr4              90585828 0 -  91010382 C
e cerAty1.NW_012009470v1      283794 0 -  16742782 C
e colAng1.NW_012118799v1      210150 0 -    514179 C
e macNem1.NW_012012389v1      278594 0 -   1764207 C
e macFas5.chr6             181272238 50 - 181584905 T
e rheMac8.chr6             179539036 0 - 180051392 C

a score=16522.000000
s hg38.chr5_KI270793v1_alt     85216 18 +    126136 TTTCCCCACTTTACCATT
s panTro5.chr5             181348945 18 - 181907262 TTTCCCCACTTTACCATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065802 18 - 183735486 TTTCCCCACTTTACCATT
i panPan2.chr5             C 0 T 50
s gorGor5.CYUI01015805v1      155433 18 +    698298 TTTCCCCACTTTACCATT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582136 18 - 121039945 TTTCCCCACTTTACCGTT
i nomLeu3.chr6             T 50 C 0
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955  1 +  16417988 I
e calJac3.chr2             203866406  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181601  0 -    438239 C
e chlSab2.chr4              90585828  0 -  91010382 C
e cerAty1.NW_012009470v1      283794  0 -  16742782 C
e colAng1.NW_012118799v1      210150  0 -    514179 C
e macNem1.NW_012012389v1      278594  0 -   1764207 C
e macFas5.chr6             181272238 50 - 181584905 T
e rheMac8.chr6             179539036  0 - 180051392 C

a score=28476.000000
s hg38.chr5_KI270793v1_alt     85234 32 +    126136 CTTGGGACCCCAGCATCCAGGCCCTCAGCGGC
s panTro5.chr5             181348963 32 - 181907262 CTTGGGACCCCAGCATCCGGCCCCTCAGCGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065770 32 - 183735486 CTTGGGACCCCAGCATCCGGCCCCTCAGCGGC
i panPan2.chr5             T 50 C 0
s gorGor5.CYUI01015805v1      155451 32 +    698298 CTTGGGACCCCAGCATCCGACCCCTCAGCGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582154 32 - 121039945 CTTGGGACCCCAGCTTCCGGCCCCTCAGCGGC
i nomLeu3.chr6             C 0 T 50
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955  1 +  16417988 I
e calJac3.chr2             203866406  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181601  0 -    438239 C
e chlSab2.chr4              90585828  0 -  91010382 C
e cerAty1.NW_012009470v1      283794  0 -  16742782 C
e colAng1.NW_012118799v1      210150  0 -    514179 C
e macNem1.NW_012012389v1      278594  0 -   1764207 C
e macFas5.chr6             181272238 50 - 181584905 T
e rheMac8.chr6             179539036  0 - 180051392 C

a score=14374.000000
s hg38.chr5_KI270793v1_alt     85266 24 +    126136 TTTCCCCACTTTACCAT-------------------------------------------------CCTTGGG
s panTro5.chr5             181348995 73 - 181907262 TTTCCCCACTTTACCATTCTTGGGACCCCAGCATCCGGCCCCTCAGCGGCTATCCCTACTTTACCATCTTGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065802 24 - 183735486 TTTCCCCACTTTACCAT-------------------------------------------------TCTTGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155483 24 +    698298 TTTCCCCACTTTACCAT-------------------------------------------------TCTTGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582136 24 - 121039945 TTTCCCCACTTTACCGT-------------------------------------------------TCTTGGG
i nomLeu3.chr6             T 50 C 0
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e otoGar3.GL873745           1891500 118 -   2165740 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955  1 +  16417988 I
e calJac3.chr2             203866406  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181601  0 -    438239 C
e chlSab2.chr4              90585828  0 -  91010382 C
e cerAty1.NW_012009470v1      283794  0 -  16742782 C
e colAng1.NW_012118799v1      210150  0 -    514179 C
e macNem1.NW_012012389v1      278594  0 -   1764207 C
e macFas5.chr6             181272238 50 - 181584905 T
e rheMac8.chr6             179539036  0 - 180051392 C

a score=21252.000000
s hg38.chr5_KI270793v1_alt     85290 26 +    126136 ACCCCAGCATCCAGGCCCTCAGCGGC
s panTro5.chr5             181349068 26 - 181907262 ACCCCAGCATCCAGGCCCTCAGAGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065826 26 - 183735486 ACCCCAGCATCCGGCCCCTCAGCGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155507 26 +    698298 ACCCCAGCATCCGGCCCCTCAGTGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582160 26 - 121039945 ACCCCAGCTTCCGGCCCCTCAGCGGC
i nomLeu3.chr6             C 0 T 50
s otoGar3.GL873745           1891618 26 -   2165740 AGCTCTGCATGGACACTTCTTGTGGT
i otoGar3.GL873745         I 118 C 0
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955  1 +  16417988 I
e calJac3.chr2             203866406  0 + 204313951 C
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      181601  0 -    438239 C
e chlSab2.chr4              90585828  0 -  91010382 C
e cerAty1.NW_012009470v1      283794  0 -  16742782 C
e colAng1.NW_012118799v1      210150  0 -    514179 C
e macNem1.NW_012012389v1      278594  0 -   1764207 C
e macFas5.chr6             181272238 50 - 181584905 T
e rheMac8.chr6             179539036  0 - 180051392 C

a score=322051.000000
s hg38.chr5_KI270793v1_alt     85316 51 +    126136 TTTCCCCACTTTACCATTCTTGGGACCCCAGC-ATCCGGCCCCTCGAGTGGC
s panTro5.chr5             181349094 52 - 181907262 TTTCCCCACTTGACCATTCTTGGGACCCCAGCAATTCGGCCCCTCGAGTGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065852 51 - 183735486 TTTCCCCACTTTACCATTCTTGGGACCCCAGC-ATCCGGCCCCTCGAGTGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155533 51 +    698298 TTTCCCCACTTTACCATTCTTGGGACCCCAGC-ATCCGGCCCCTGGAGCGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582136 50 - 121039945 TTTCCCCACTTTACCGTTCTTGGGACCCCAGC-TTCCGGCCCCTC-AGCGGC
i nomLeu3.chr6             T 50 C 0
s rheMac8.chr6             179539036 51 - 180051392 TTTCCCCACTTTACCATTCTTGGGACAGCAGC-ATCCGGCCCCTCGAGCGGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272188 51 - 181584905 TTTCCCCACTTTACCATTCTTGGGACAGCAGC-ATCCGGCCCCTCGAGCGGT
i macFas5.chr6             T 50 C 0
s macNem1.NW_012012389v1      278594 51 -   1764207 TTTCCCCACTTTACCATTCTTGGGACAGCAGC-ATCCGGCCCCTCGAGCGGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283794 51 -  16742782 TTTCCCCACTTTACCATTCTTGGGACAGCAGC-ATCCGGCCCCTCGAGCAGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585828 51 -  91010382 TTTCCCCACTTTACCATTCTTGGGACAGCAGC-ATCCGGCCCCTCGAGCGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181601 51 -    438239 TTTCCCCACTTTACCATTCTTGGGACAGCAGC-ATCCGGCCCCTCGAGCAGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210150 51 -    514179 TTTCCCCACTTTACCATTCTTGGGACAGCAGC-ATCTGGCCCCTCGAGCGGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866406 51 + 204313951 TTTCCCCACCTGACCGTTCTTGGGACAGCAAC-ACCCGGCCCCAGGAGCACC
i calJac3.chr2             C 0 I 1
s otoGar3.GL873745           1891644 46 -   2165740 GTTTCCCACTTGTCCTCACTTGGACCCTCCAT------GTCCCCCAGATGGT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438407 26 -  25620257 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16024955  1 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=196924.000000
s hg38.chr5_KI270793v1_alt     85367 22 +    126136 GGCACCTT-GGCTTCTGCTCAG-C
s panTro5.chr5             181349146 24 - 181907262 AGCAACTTGGGCTTCTGCTCAGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065903 22 - 183735486 AGCACCTT-GGCTTCTGCTCAG-C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155584 22 +    698298 GGCACCTT-GGCTTCTGCTCAG-C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582186 22 - 121039945 GGCACCTT-GGCTTCTGCTCAG-C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539087 22 - 180051392 GGCACCTT-GGCTTCTGCTCAG-C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272239 22 - 181584905 GGCACCTT-GGCTTCTGCTCAG-C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278645 22 -   1764207 GACACCTT-GGCTTCTGCTCAG-C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283845 22 -  16742782 GGCACCTT-GGCTTCTGCTCAG-C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585879 22 -  91010382 GGCACCTT-GGCTTCTGCTCAG-C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181652 22 -    438239 GGCACCTT-GGCTTCTGCTCAG-C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210201 22 -    514179 GGCACCTT-GGCTTCTGCTCAG-C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866458 22 + 204313951 GGCACCTT-GGCTTCTGCTCAG-C
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16024956 22 +  16417988 GGCACCTC-GGCTTCTGCTCTG-C
i saiBol1.JH378155         I 1 C 0
s aotNan1.NW_018503740v1    25438433 22 -  25620257 GGCACCTT-GGCTTCTGCTCAG-C
i aotNan1.NW_018503740v1   I 26 I 1852
s otoGar3.GL873745           1891690 21 -   2165740 GGCTGTTC-TGCCAC-ACCCAG-T
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=255777.000000
s hg38.chr5_KI270793v1_alt     85389 35 +    126136 -ACTCTGCCAGTTCCCCTCCACGA-GGCGGCTTGAGC
s panTro5.chr5             181349170 36 - 181907262 -ACTCCGCCAGTTCCCTCCAACGAGGGCGGCTGAGAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065925 35 - 183735486 -ACTCTGCCAGTTCCCCTCCACGA-GGCGGCTTGAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155606 35 +    698298 -ACTCCGCCAGCTCCCCTCCATGA-GGCAGCTTGAAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582208 35 - 121039945 -ACTCCGCCGGTTCCCCTCCACGA-GGCGGCTTGAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539109 35 - 180051392 -ACTCCGCCTGTTCCCCTCCACGA-GGCGGCTTGAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272261 35 - 181584905 -ACTCCGCCTGTTCCCCTCCACGA-GGCGGCTTGAGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278667 35 -   1764207 -ACTCCGCCTGTTCCCCTCCACGA-GGCGGCTTGAGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283867 35 -  16742782 -ACTCCGCCTGTTCCCCTCCACGA-GGCGGCTTGAGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585901 35 -  91010382 -ACTCCGCCTGTTCCCCTCCACGA-GGCAGCTTGAGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181674 35 -    438239 -ACTCCGCCTGTTCCCCTCCACGA-GGCGGCTTGAGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210223 35 -    514179 -ACTCCACCTGTTCCCCTCCATGA-GGCGGCTTGAGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866480 35 + 204313951 -CCTCGGTCCGCTCCCCTCGAGGA-GGCGGCTCGAGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16024978 35 +  16417988 -CCTCCGTCTGCTCCCCTCGACGA-GGCGGCTTGAGC
i saiBol1.JH378155         C 0 I 1609
s otoGar3.GL873745           1891711 35 -   2165740 GCTCCTTCCTGCTCCCCTTGACAA-GA-AGCTTGAGT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=177645.000000
s hg38.chr5_KI270793v1_alt     85424 33 +    126136 ACACTC---------ACTGGACCCAC-------------CTGGCCCTGCAGCCC-A
s panTro5.chr5             181349206 34 - 181907262 AAACTC--------TCCTGGACCCAC-------------CTGG-CCTGCAGCCCTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065960 33 - 183735486 AAACTC---------GCTGGACCCAC-------------CTGGCCCTGCAGCCC-A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155641 33 +    698298 ACACTT---------GCTGGACCCAC-------------CTGACCCTGCAGCCC-A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582243 33 - 121039945 ACACTC---------GCTGGACCCAC-------------CTGACCCCGGAGCCC-A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539144 33 - 180051392 ACACTT---------GCTGGACCCAc-------------ctggccctgccgccc-a
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272296 33 - 181584905 ACACTT---------GCTGGACCCAC-------------CTGGCCCCGCCGCCC-A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278702 33 -   1764207 ACACTT---------GCTGGACCCAC-------------CTGGCCCCGCCGCCC-A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283902 33 -  16742782 ACACTT---------GCTGGACCCAC-------------CTGGCCCCGCCGCCC-A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585936 33 -  91010382 ACGCTT---------GCTGGACCCAC-------------CTGGCCCCGCCGCCC-A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181709 33 -    438239 ACACTT---------GCTGGACCCAC-------------CTGGCCCCGCCGCCC-A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210258 33 -    514179 ACACTT---------ACCGGACCCAC-------------CTGGCCCTGCCGCCC-A
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866515 46 + 204313951 ACACCT---------GCTGGACCCACAGACCCCTAGACTCTGGCCCCGCAGCTC-A
i calJac3.chr2             C 0 I 68
s otoGar3.GL873745           1891746 36 -   2165740 GCACCCACATCCCAAGCTGGACCCTG-------------ATGACCCAGC-------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109350 241 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=314964.000000
s hg38.chr5_KI270793v1_alt     85457 42 +    126136 GCCCTGGC-CCCGGCTGCTGTGGTGCTG-AGACCCTCC------------CCACCC
s panTro5.chr5             181349240 42 - 181907262 GCCCTGGC-CCCGGCTGCTGTGGTGCTGTAGACCCTCC------------CCA-CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183065993 42 - 183735486 GCCCTGGC-CCCGGCTGCTGTGGTGCTG-AGACCCTCC------------CCACCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155674 42 +    698298 GCCCTGGC-CCCGGCTGCTGTGGTGCTG-AGACCCTCC------------CCACCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582276 42 - 121039945 GCCCTGGC-CCCGGCTGCTGTGGTGCTG-AGACCCTCC------------CCACCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539177 42 - 180051392 gcccaggc-cccggccgccgTGGTGCTG-AGACCCTCC------------CCAGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272329 42 - 181584905 GCCCAGGC-CCCGGCCGCCGTGGTGCTG-AGACCCTCC------------CCAGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278735 42 -   1764207 GCCCAGGC-CCCGGCCGCCGTGGTGCTG-AGACCCTCC------------CCAGCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283935 42 -  16742782 GCCCAGGC-CCCGGCCGCCGTGGTGCTG-AGACCCTCC------------CCAGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90585969 42 -  91010382 GCCCAGGC-CCCGGCCGCTGTGGTGCTG-AGACCCTCC------------CCAGCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181742 42 -    438239 GCCCAGGC-CCCAGCCGCCGTGGTGCTG-AGACCCTCC------------CCAGCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210291 42 -    514179 GCCTAAGC-CCCGGCTGCTGTGGTGCTG-AGACCCTCC------------CCAGCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866629 41 + 204313951 GCCCTGGC-CCCGGCGGCTGTGGTGCTG-AG-CCCACC------------CCTCCC
i calJac3.chr2             I 68 I 14
s cebCap1.NW_016108158v1      109591 41 +    298490 GCCCTGGC-CCCGGCTGCTGTGGTGCTG-AG-CCCGCC------------CCACCC
i cebCap1.NW_016108158v1   I 241 I 54
s otoGar3.GL873745           1891782 54 -   2165740 -TCCTGGCACTTGGCTGCTGTAGTGCTA-AGGTGTTCCAATCGTGACTGGCCACCC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=482714.000000
s hg38.chr5_KI270793v1_alt     85499 81 +    126136 ----------GCCTGCA-------GCAGGCTC---------CTCCCCTG-GACCTTC--CTCCGCAGGTGACCCCAGACACAT-CAGG-GCCCTCA-GCTGACACCTTTCCAT
s panTro5.chr5             181349282 85 - 181907262 ----------GCCTGCA------GGCAGGCTC---------TACCCCTGCGACCTTC--CTCCGCAGGTGACCCCAGACACATCCAGGCGCGCTCA-GCTGACACCTTTCCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183066035 81 - 183735486 ----------GCCTGCA-------GCAGGCTC---------CTCCCCTG-GACCTTC--CTCCGCAGGTGACCCCAGACACAT-CAGG-GCCCTCA-GCTGACACCTTTCCAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155716 81 +    698298 ----------GCCTGCA-------GCAGGCTT---------CTCCCCTG-GACCTTC--CTCCGCAGGTGACCCCAGACACAT-CAGG-GCCCTCA-GCTGACACCTTTCCAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582318 81 - 121039945 ----------GCCTGCA-------GCAGGCTC---------CTCCCCTG-GACCTTC--CTCCGCAGGCGACCCCAGACACAT-CAGG-GCCCTCA-GCTGGCACCTTTCCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539219 81 - 180051392 ----------CCCTGCA-------GCAGGCTC---------CTCCCCTG-GACCTTC--CTCCACAGGGGACCCCAGACACAC-CAGG-ACCCTCA-GCTGACACCTTTCTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272371 81 - 181584905 ----------CCCTGCA-------GCAGGCTC---------CTCCCCTG-GACCTTC--CTCCACAGGGGACCCCAGACACAC-CAGG-ACCCTCA-GCTGACACCTTTCTGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278777 81 -   1764207 ----------CCCTGCA-------GCAGGCTC---------CTCCCCTG-GACCTTC--CTCCACAGGGGACCCCAGACACAC-CAGG-ACCCTCA-GCTGACACCTTTCTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      283977 81 -  16742782 ----------CCCTGCA-------GCAGGCTC---------CTCCCCTG-GACCTTC--CTCCACAGGAGACCCCAGACACAC-CGGG-GCCCTCA-GCTGACACCTTTCTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90586011 81 -  91010382 ----------CCCTGCA-------GCAGGCTC---------CTCCCCTG-GACCTTC--CTCCACAGGGGACCCCAGACACAC-CAGG-GCCCTCA-GCTGACACCTTTCTGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181784 81 -    438239 ----------CCCTGCA-------GCAGGCTC---------CTCCCCTG-GACCTTC--CTCCACAGGAGACCCCAGACACAC-CAGG-GCCCTCA-GCTGACACCTTTCTGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210333 81 -    514179 ----------CCCTGCA-------GCAGGCTC---------CTCCCCTG-GACCTTC--CTGCACAGGGGACCCCAGGCACAC-CAGG-GCCCTCA-GCCGACACCTTTCTGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866684 87 + 204313951 ----------AGCTGCTCAGACGTGCAGGCTC---------CTCGCCCG-GA-ATTC--CTCCACAGGCGACCCCAGACACAT-AAGC-GCCCTCA-GCCGACGCCCTCCCAC
i calJac3.chr2             I 14 C 0
s otoGar3.GL873745           1891836 95 -   2165740 GGCCTCTGGCTGCTGCT-------GCAGAGTCACATGGTCTCTGTCCTG-GATTTTCCTCTCCACAGAAAAAGTTGGA-AAAT-GAGG-GTCCTCAGGCTGACCAT-------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109632 54 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=543968.000000
s hg38.chr5_KI270793v1_alt     85580 86 +    126136 GT-CCTCCGCAGGTCCCTGCACCCCGCACGC-CC-ACCTGCCTCT-CGCATGCTGGGGCCTCTGCCTGTCCCTCT-GCC--CTGATGGCTTTC
s panTro5.chr5             181349367 90 - 181907262 GTCCCTTCCCAGGTCCCTGCACCCCGCACGTGCC-ACCTGCCTCTGCGCATGCTGGGGCCTCTGCC-GTCCCTCTAGCCATCTGATGG-TTTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183066116 86 - 183735486 GT-CCTCCCCAGGTCCCTGCACCCCGCACGC-CC-ACCTGCCTCT-CGCATGCTGGGGCCTCTGCCTGTCCCTCT-GCC--CTGATGGCTTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155797 86 +    698298 GT-CCTCCCCAGGTCCCTGCACCCCACACGC-CC-ACCTGCCTCT-CGCATGCTGGGGCCTCTGCCTGTCCCTCT-GCC--CTGATGGCTTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582399 86 - 121039945 GT-CCTCCCCAGGTCCCTGCACCCCGCACGC-CC-GCCTGCCTCT-CGCATGCTGGGGCCTCTGCCTGTCCCTCT-GCC--CTGATGGCTTTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539300 86 - 180051392 GT-CCTCCCCAGGTCCCTGCACCCCGCACAC-CC-GCCTGCTCCT-CGCATGCCAGGGCCTCGGCCTGTCCCTCT-GCC--CTGATGGCTTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272452 86 - 181584905 GT-CCTCCCCAGGTCCCTGCACCCCGCACAC-CC-GCCTGCTCCT-CGCATGCCAGGGCCTCGGCCTGTCCCTCT-GCC--CTGATGGCTTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278858 86 -   1764207 GT-CCTCCCCAGGTCCCTGCACCCCGCACAC-CC-GCCTGCTCCT-CGCATGCCAGGGCCTCGGCCTGTCCCTCT-GCC--CTGATGGCTTTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284058 86 -  16742782 GT-CCTCCCCAGGTCCCTGCACCCCGCACAC-CC-GCCTGCTCCT-CGCATGCCAGGGCCTCGGCCTGTCCCTCT-GCC--CTGATGGCTTTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90586092 75 -  91010382 GT-CCTCCCCAGGTCCCTGCGCCCCGCACAC-C-------------CGCATGCCAGGGCCTCGGCCTGTCCCTCT-GCC--CTGATGGCTTTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181865 86 -    438239 GT-CCTCCCCAGGTCCCTGCACCCCGCACAC-CC-GCCTGCTCCT-CGCATGCCAGGGCCTCGGCCTGTCCCTCT-GCC--CTGATGGCTTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210414 86 -    514179 GT-CCTCCCCAGGTCCCTGCACCCCGCACAC-CC-GCCTGCTCCT-CTCATGCCAGGGCCTCGGCCTGTCCCTCT-ACC--CTGATGGCTTTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866771 61 + 204313951 GT-CCTCCCCAGGCCCCTGCATGC----------------------CGCATGCCAGGG------CCTGTCCCTCA-GCC--CTGATGGCTCTT
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      109686 86 +    298490 GT-CCTCCCCGGGCCCCTGCACCCCGCACGC-CC-GCCTGCCCTT-CGCATGCCAGGGCCTCCACCTGTCCCTCA-GCC--CTGACGGCTTTC
i cebCap1.NW_016108158v1   I 54 I 2663
s otoGar3.GL873745           1891931 80 -   2165740 --ACCTGGCCTGA-CCTTGC---CTGCCCAT-CCTTCCTACCACT-GGAGGCCTTGTGCTT---CCTGTCCCCAC-CCCACCTGCTGGCTCT-
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=413935.000000
s hg38.chr5_KI270793v1_alt     85666  78 +    126136 ATGTCACTGC-CTAAGCACGTTCAGCG-GTCCTCCACCGAGCACT--AGAACACCAGACCCTC---------------------------------------------------------------------CCTCCCGCTGTCCCGCGCC
s panTro5.chr5             181349457  76 - 181907262 GTGTCACCGCGCTAAGCACGTTCAGC--GTCCTCGCACGAGCACT--AG-ACA-CAGACCCTC---------------------------------------------------------------------CCTCCCGCTGTCCCGCGCC
i panTro5.chr5             C 0 I 24
s panPan2.chr5             183066202  78 - 183735486 GTGTCACCGC-CTAAGCACGTTCAGCG-GTCCTCCACCGAGCACT--AGAACACCAGACCCTC---------------------------------------------------------------------CCTCCCGCTGTCCCGCGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155883  78 +    698298 GTGTCACCGC-CTAAGCACGTTCAGCG-GTCCTCCACTGAGCACT--GGAACACCAGACCCTC---------------------------------------------------------------------CCTCCCGCTGTCCCGCACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582485  79 - 121039945 CTGTCACCAC-CTAAGCACATGCAGCGCGTCCTCCACTGAGCACT--AGAACACCAGACCCTC---------------------------------------------------------------------CCTCCCACTGCCCCATGCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539386  79 - 180051392 CTGTCACCAC-CTAGGCACGTTCAGCC-ATCCTCCACTGAGCACTC-AGAACACCAGACCCTC---------------------------------------------------------------------CCTCCCGCTGTCCCATGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272538  79 - 181584905 CTGTCACCAC-CTAGGCACGTTCAGCC-ATCCTCCACTGAGCACTC-AGAACACCAGACCCTC---------------------------------------------------------------------CCTCCCGCTGTCCCGTGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      278944  79 -   1764207 CTGTCACCAC-CTAGGCACGTTCAGCC-ATCCTCCACTGAGCACTC-AGAACACCAGACCCTC---------------------------------------------------------------------CCTCCCGCTGTCCCGTGCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284144  77 -  16742782 CTGTCGCGGC-CTAGGCACGTTCGGCC-ATCTTCCACTGAGCACTC---AACACCAGACCCTC---------------------------------------------------------------------CCTCCCGCTGTCCCGTGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90586167 144 -  91010382 CTGTCACCGC-CGAGGCACGTTCGGCC-----TCCACTGAGCACTC-AGGGCACCAGAGCCTCCCTCCCGctggcctgtgcctctgcctcccgctgtcctgtgcctctgcctcccgctgtcctgtgcctctgcctcccgctgtcctgtgcc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      181951  79 -    438239 CTGTCACCGC-CTAGGCACGTTCGGCC-ATCTTCCGCTGAGCACTC-AGAACACCAGACCCTC---------------------------------------------------------------------CCTCCCGCTGTCCCGTGCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210500  79 -    514179 CTGTCACCGC-CTAGGCACGTTCAGCC-ATCCTCCACTGAGCACTC-AGAACACCAGACCCTC---------------------------------------------------------------------CCTCCCGCTGTCCCGTGCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866832  77 + 204313951 CTGTTACCAC-CTGCGCACGTTCTGCC-ATCCTCTGCTGAACACTG-AGAACAGCAGACCCTC---------------------------------------------------------------------CTTCCCGCTGCCCTGCC--
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1892011  78 -   2165740 -TGTCACCAC-TCATGCATATTCAGTT-G-CTTCCATTTCAAACCCAACAACACCAGGCCCTC---------------------------------------------------------------------CCTCCCAGTGACCTGGGCC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=66816.000000
s hg38.chr5_KI270793v1_alt     85744 12 +    126136 TCTGCTTCCTGC
s panPan2.chr5             183066280 12 - 183735486 TCTGCTTCCTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155961 12 +    698298 TCTGCTTCCTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582564 12 - 121039945 TCTGCCTCCCGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539465 12 - 180051392 TCTGCCTCCCGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272617 12 - 181584905 TCTGCCTCCCGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279023 12 -   1764207 TCTGCCTCCCGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284221 12 -  16742782 TCTGCCTCCCGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90586311 12 -  91010382 tctgcctCCCGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      182030 12 -    438239 TCTGCCTCCCGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210579 12 -    514179 TCTGCCTCCCGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866909 12 + 204313951 TCTGCCTGCCGC
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1892089  9 -   2165740 TCTCCTCCC---
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181349533 24 - 181907262 I
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=225783.000000
s hg38.chr5_KI270793v1_alt     85756 41 +    126136 TGCC-AAAGCTTCCCCGTCG--CACCCGAGCCCCTCGCACCTGG-
s panTro5.chr5             181349557 44 - 181907262 TGCCAAAAGCTTCCCCGTCGTACGCCTGAGCCCCTCGCACCTGG-
i panTro5.chr5             I 24 C 0
s panPan2.chr5             183066292 41 - 183735486 TGCC-AAAGCTTCCCCGTCG--TACCCGAGCCCCTCGCACCTGG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      155973 41 +    698298 TGCC-AAAGCTTCCCCGTCG--CACCCGAGCCCCTCGCACCTGG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582576 41 - 121039945 TGCC-AAAGCTTCCCCGTTG--CACCCAAGCCCCTCGCACCTGG-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539477 40 - 180051392 TGCC-AAAGCTTCCCCATTG--CACCTGAGCTCCTCGCA-CTGG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272629 40 - 181584905 TGCC-AAAGCTTCCCCATCG--CACCTGAGCTCCTCGCA-CTGG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279035 40 -   1764207 TGCC-AAAGCTTCCCCATTG--CACCTGAGCTCCTCGTA-CTGG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284233 40 -  16742782 TGCC-AAAGCTTCCCCGTTG--CACCTGAGCTCCTCGCA-CTGG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90586323 40 -  91010382 TGCC-AAAGCTTCCCCGTTA--CACCTGAGCTCCTCGCA-CTGG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      182042 40 -    438239 TGCC-AAAGCTTCCCCGTTG--CACCTGAGCTCCTCGCA-CTGG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210591 39 -    514179 TGCC-AAAGCTT-CCCGTTT--CACCCGAGCTCCTCGCA-CTGG-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203866921 39 + 204313951 TGCC-AAAGCTGTCCCA--G--CACCCGAACCCCCCACACCCAG-
i calJac3.chr2             C 0 I 5470
s otoGar3.GL873745           1892098 37 -   2165740 -----AAAGCTCACCAGTCA--CATCCAAGCCTGGCATA-CTAGG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=1094080.000000
s hg38.chr5_KI270793v1_alt     85797 194 +    126136 --------------------------CTCTGCCATACGGAGCAGTCCTTGTCCCTGCAGC----AGCG--TCACCAAAGCCTTCCTCTTGATACAG--CTGCTC-CTTCT----------GGGGTC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTTGTGGGGTCT--------GTGGGATACTC--TGACCTGAGGT-CTCCCAG-ACC-------------------CTCCCTGGGAGGATG----------------ACCCAGACCTCAGCTCCGAG-GT
s panTro5.chr5             181349601 213 - 181907262 --------------------------CTCGCCCACACGGAGCAGT-CTTGTCCCTGCAGCA---AGCGTATCACCAAAGGCCTCCTCTTGATACAGGCTTGCTCGCTTCT----------GGGGTCGCAGGAGATTTGGCGCCTGAGGAGCTGGATGGTCACTTGTGGGGTCTCATCCACCGT-GGATACTTCGCGACCTGAGGTCCTCCCAGCACC-------------------CTCCCTGGGAGGATG-----------------CCCAGACCTCAGCTCCGAGAGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183066333 194 - 183735486 --------------------------CTCTGCCACACGGAGCAGTCCTTGTCCCTGCAGC----AGCG--TCACCAAAGCCTTCCTCTTGATACAG--CTGCTC-CTTCT----------GGGGTC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTTGTGGGGTCT--------GTGGGATACTC--CGACCTGAGGT-CTCCCAG-ACC-------------------CTCCCTGGGAGGATG----------------ACCCAGACCTCAGCTCCGAG-GT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156014 194 +    698298 --------------------------CTCTGCCACACGGGGCAGTCCTTTTCCCTGCAGC----AGCG--TCACCAAAGCCTTCCTCTTGATACAG--CTGCTC-CTTCT----------GGGGTC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTTGTGGGGTCT--------GTGGGATACTC--CGACCTGAGGT-TTCCCAG-ACC-------------------CTCCCTGGGAGGATG----------------ACCCAGACCTCAGCTCCGAG-GT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582617 191 - 121039945 --------------------------CTCTGCCACACAGAGCAGTCCTTGTCCCTGCAGC----AGTG--CCACCAAAGCCTTTCTCTCGATACAG--CTGCTC-CTTCT----------GGGGTC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTTGTGGGGTCC--------GTGGAATGCTG--TGACCTGAGGT-CTCCCAG-ACC-------------------CTCCCTGGGAGGATG----------------ACCCAG---CCAGCTCTGAG-GT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539517 197 - 180051392 --------------------------CTCTGCCACATGGAGCAGTCCTCGTCCCTGCAGCAAGCAGCG--TCACCAAAGCCCTTCTCTTGACACAG--ATGCTC-CTTCT----------GGGGTC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTCGTGGGGTCT--------GTGAGATGCTC--TGACCTGAGGT-CTCCCAG-ACC-------------------CTCCCTGAGAGGATG----------------ACCCAGACCCCAG-CCCGAG-GT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181272669 198 - 181584905 --------------------------CTCTGCCACACGGAGCAGTCCTCGTCCCTGCAGCAAGCAGCG--TCACCAAAGCCCTTCTCTTGACACAG--ATGCTC-CTTCT----------GGGGTC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTCGTGGGGTCT--------GTGGGATGCTC--TGACCTGAGGT-CTCCCAG-ACC-------------------CTCCCTGAGAGGATG----------------ACCCAGACCCCAGCCCCGAG-GT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279075 198 -   1764207 --------------------------CTCTGCCACACGGAGCAGTCCTCGTCCCTGCAGCAAGCAGCG--TCACCAAAGCCCTTCTCTTGACACAG--ATGCTC-CTTCT----------GGGGTC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTCGTGGGGTCT--------GTGGGATGCTC--TGACCTGAGGT-CTCCCAG-ACC-------------------CTCCCTGAGAGGATG----------------ACCCAGACCCCAGCCCCGAG-GT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284273 198 -  16742782 --------------------------CTCTGCCACACGGAGCAGTCCTTGTCCCTGCAGCAAGCAGCG--TCACCAAAGCCTTTCTCTTGACACAG--ATGCTC-CTTCT----------GGGATC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTTGTGGGGTCT--------GTGGGATGCTC--TGACCTGAGGT-CTCCCAG-ACC-------------------CTCCCTGAGAGGATG----------------ACCCAGACCCCAGCCCCGAG-GT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90586363 198 -  91010382 --------------------------CTCTGCCACACGGAGCAGTCCTTGACCCTCCAGCAAGCAGCA--TCACCAAAGCCTTTCTCTTGACACAG--ATGCTC-CTTCT----------GGGGTC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTCGTGGGGTCT--------GTGGGATGCTG--TGACCTGAGGT-CTCCCAG-ACC-------------------CTCCCTGAGAGGATG----------------ACCCAGACCCCAGCCCCGAG-GT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      182082 198 -    438239 --------------------------CTCTGCCACACGGAGCAGTCCTTGTCCCTGCAGCAAGCAGCG--TCACCAAAGCCTTTCTCTTGACACAG--ATGCTC-CTTCT----------GGGATC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTTGTGGGGTCT--------GTGGGATGCTC--TGACCTGAGGT-CTCCCAG-ACC-------------------CTCCCTGAGAGGATG----------------ACCCAGACCCCAGCCCCAAG-GT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      210630 198 -    514179 --------------------------CTCTGCCACATGGAGCAGTCCTTGTCCCTGCAGCAAGCAGCG--TCACCAAAGCCTTTCTCTTGACACAG--CTGCTC-CTTCT----------GGGGTC-CAGGAGATTTG--GCCTGAGGAGCTGGGATGTCACTCGTGGGGTCT--------GTGGGATGTTC--TGACCTGAAGT-CTCCCAG-ACC-------------------CTCCGTGAGAGGATG----------------ACCCAGACCCCAACCCCGAG-GT
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1892135 262 -   2165740 CCCTGCCTTTGCCCCTCTTGGCCAAGCCCCACTGCGCTGACCAGTCCTTATCTCTGCAGC----GGTG--TCACCTGGGCCACTCTTTTGGCACAG--CTGCTT-CCTTTGGCCTTTTTGGGGGCC-CAGAAGTTTTG--GCCC--AGAGCTAGAGTGTCCCTTGAGGGTTCT--------GTGGGATATTC--CAACCTCAGGG-CACCCAG-ACCCAGAGGCCTCCAGGTCTGACTCCCTGAAAACATGCAGATGCTCCTCAGAGAACATGAGCACAGCCAC-AG-GT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2             203866960 5470 + 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=1091884.000000
s hg38.chr5_KI270793v1_alt     85991 207 +    126136 ---------CGAGGCCTGGTG-CAGCTCAGGG-CTCAGTGGGCCCCA-----------------------------GGCAGGA--------------GCCA-----------CACACCCAAGCCC-TGTGCACCCAAGCCT------------------------------GAGAAGTGC-CCTCGGCAGAAGGAA------------------------------------------------------GGGCCCGTGGGGT-CAGA----GCCG-GGCCACCCAT---------------------------------------------GGGGCCTGTGCTCCC---------------------AGGGGACACACC---------------G-GGGCCACTG-AGGGCTG-TCAAGACAGGGC-CTAGGCATGACCTTGGTGACA---
s panTro5.chr5             181349814 214 - 181907262 ---------CGAGGCTGGCTGCCAGCTCAGGGCCTCAGT-GGCCCCA-----------------------------GGCAG----------------GCCA----------CCACACCCAAGCGCATGTGCACCCAAGCCTGC----------------------------GAGAAGTGC-CTCAGGCAGAAGGAA------------------------------------------------------GGGCCCGTGGGTCGCCGA----GCC--GGCCACCCAC---------------------------------------------AGGTCTGCTGCTCCC---------------------AGGGGACACACC---------------GCGGGCCACTGTAGGGATGCTCAAGACAGGGCACTATACATGACCTTAGCGACA---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183066527 206 - 183735486 ---------CGAGGCCTGGTG-CAGCTCAGGG-CTCAGTGGGCCCCA-----------------------------GGCAGGA--------------GCCA-----------CACACCCAAGCGC-TGTGCACCCAAGCCT------------------------------GAGAAGTGC-CCTCGGCAGAAGGAA------------------------------------------------------GGGCCCGTGGGGT-CGGA----GCCG-GGCCACCCAC---------------------------------------------GGGTCTG-TGCTCCC---------------------AGGGGACACACC---------------G-GGGCCACTG-AGGGATG-TCAAGACAGGGC-CTAGGCATGACCTTAGCGACA---
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156208 212 +    698298 ---------CGAGGCCTGGTG-CAGCTCAGGG-CTCAGTGGGCCCCA-----------------------------GGCAGGA--------------GCCA-----------CAAACCCAAACCC-TGTGCACCCAAGCCT------------------------------GAGAAGTGC-CCTCGGCAGAAGGAA------------------------------------------------------GGGCCCGTGGGGT-CGGAAGATGCGGTGGGCACCCAT---------------------------------------------GGGGGCTGTGCTCCC---------------------AGGGGACACACC---------------A-GGGCCACTG-AGGGCTG-TCAAGACAGGGC-CTAGGCATGACCTTGGTGACA---
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120582808 205 - 121039945 ---------CGAGGCCTGGTG-CAGCTCAGGG-CTCAGTGGGCCCCA-----------------------------GGCGGGA--------------GCCA-----------CACACCCAAGCCC-TGTGCACCCAAGCCT------------------------------GAGAAGTGC-CCTTGGCAGAAGGAA------------------------------------------------------GGG-CCGCGGGGT-CAGA----GCCG-GGCCACCCAT---------------------------------------------GGAGGCTGTGCTCCC---------------------AGGGG-CACACC---------------A-GGGCCACTG-AGGGCTG-TCAAGGCAGGGC-CTAGGCATGACTTTGGTGACA---
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539714 207 - 180051392 ---------CGAGGCCTGGTG-CAGCTCAGGG-CTCAGTGGGTCCCA-----------------------------GGCGGGA--------------GCCA-----------CACCCCCAAGCCC-TGTGCACCCAAGCCT------------------------------GGGAAGTGC-CCTCGGCAGAAGGAA------------------------------------------------------GGACCCACAGGGT-CAGA----GCCA-GGCCACCCAT---------------------------------------------GGAGGCTGTGCTCCC---------------------AGGGGACACACT---------------G-GGGGCACTG-AGGGCTG-TCAAGGCAGGGC-CTAGGCATGACCTTGGTGACA---
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181272867 207 - 181584905 ---------CGAGGCCTGGTG-CAGCTCAGGG-CTCAGTGGGTCCCA-----------------------------GGCGGGA--------------GCCA-----------CACCCCCAAGCCC-TGTGCACCCAAGCCT------------------------------GGGAAGTGC-CCTCGGCAGAAGGAA------------------------------------------------------GGACCCACAGGGT-CAGA----GCCA-GGCCACCCAT---------------------------------------------GGAGGCTGTGCTCCC---------------------AGGGGACACACT---------------G-GGGGCACTG-AGGGCTG-TCAAGGCAGGGC-CTAGGCATGACCTTGGTGACA---
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279273 207 -   1764207 ---------CGAGGCCTGGTG-CAGCTCAGGG-CTCAGTGGGTCCCA-----------------------------GGCGGGA--------------GCCA-----------CACTCCCAAGCCC-TGTGCACCCAAGCCT------------------------------GGGAAGTGC-CCTCGGCAGAAGGAA------------------------------------------------------GGACCCACAGGGT-CGGA----GCCA-GGCCACCCAT---------------------------------------------GGAGGCTGTGCTCCC---------------------AGGGGACACACT---------------G-GGGGCACTG-AGGGCTG-TCAAGGCAGGGC-CTAGGCATGACCTTGGTGACA---
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      284471 207 -  16742782 ---------CGAGGTCTGGTG-CAGCTCAGGG-CTCAGTGGGTCCCA-----------------------------GGCGGGA--------------GCCA-----------CACCCCCAAGCCC-TGTGCACCCAAGCCT------------------------------GGGAAGTGC-CCTCGGCAGAAGGAA------------------------------------------------------GGACCCACAGGGT-CGGA----GCCA-GGCCACCCAT---------------------------------------------GGAGGCTGTGCTCCC---------------------AGGGGACACACT---------------G-GGGGCACTG-AGGGCTG-TCAAGGCAGGGC-CTAGGCATGACCTTGGTGACA---
i cerAty1.NW_012009470v1   C 0 I 5
s chlSab2.chr4              90586561 207 -  91010382 ---------CAAGGCCTGGTG-CAGCTCAGGG-CTCAGTGGGTCCCA-----------------------------GGCGGGA--------------GCCA-----------CACCCCCAAGCCC-TGTGCACTCAAGCCT------------------------------GGGAAGTGC-CCTCGGCAGAAGGAA------------------------------------------------------GGACCCACAGGGT-CGGA----GCCA-GGCCACCCAT---------------------------------------------GGAGGCTGTGCTCCC---------------------AGGGGACACACC---------------G-GGGGCACTG-AGGGCTG-TCAAGGCGTTGC-CTAGGCATGACCTTGGTGACA---
i chlSab2.chr4             C 0 I 35
s manLeu1.NW_012110441v1      182280 207 -    438239 ---------CGAGGCCTGGTG-CAGCTCAGGG-CTCAGTGGGTCCCA-----------------------------GGCAGGA--------------GCCA-----------CACCCCCAAGCCC-TGTGCACCCAAGCCT------------------------------GGGAAGTGC-CCTCGGCAGAAGGAA------------------------------------------------------GGACCCGCAGGGT-CGGA----GCCA-GGCCACCCAT---------------------------------------------GGAGGCTGTGCTCCC---------------------AGGGGACACACT---------------G-GGGGCACTG-AGGGCTG-TCAAGGCAGGGC-CTAGGCATGACCTTGGTGACA---
i manLeu1.NW_012110441v1   C 0 I 1
s colAng1.NW_012118799v1      210828 207 -    514179 ---------CGAGGCCTGGTG-CAGCTCAGGG-CTCAGTGGGTCCCA-----------------------------GGCGGGA--------------GCCA-----------CGCCCCCAAGCCC-CGTGCACCCAAGCCT------------------------------GGAAAGTGC-CCTCGGCAGAAGGAA------------------------------------------------------GGACCCACAGGGT-CAGA----GCTG-GGCCCCCCAA---------------------------------------------GGAGGCTGTGCTCCC---------------------AGGGGACACACC---------------G-GGGCCACTG-AGGGCTG-TCAAGGCAGGGC-CTAGGCATGACCTTGGTGACA---
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                445633 181 - 204313951 ---------cGAGCCCTGGTG-CAGCTCAGGG---------GCCCCA-----------------------------GGCAGGA--------------GCCA------------GCACCCAAGCCC---------------G------------------------------GGGGAGTGG-CCACAGCAGAAGGAA------------------------------------------------------GGACCCGCAAAGT-T-------GCC--GCCCACCCG----------------------------------------------GGGGGCTGTGCTCCCA------------------GGAGGGGACCCA-T---------------G-GGGCTGCTG-TGGGCTG-TCAAGGTGGGGC-TTAGGCGTGACCTAGGTGACA---
i calJac3.chr2             T 72045 C 0
s otoGar3.GL873745           1892397 439 -   2165740 CCACCTACTGAGGGCCTGGCA-GAGCTCAGAA-TGCAGTGGGACCCACACCAGCCCTGCCCCACAGGAGCACCTGTAGCAGGATAGGGGGCAGCAAGGCCAGAGAGCAGGACCACCCCCAACTAG-GGCCAGCCCAGGACTATCTTTGATGAAACTTTGTTGTTCGAGAAAAAGAAATGCTTTTCAAGAAAAGGAAATTATggctcagcacctatggctcaagtggctaaggtgccagccacatacacctgagcgggcaggtt-caaatcagcctg-ggcccaccaaacaacaatgatggctgcaaccaaaaaacagccaggtgttgctgtgggcacctgtagtcccagctacttgggaggcataggcaggagactcacttgagcccaggagttgg-aggttgctg-tgagctg-tgatgccatggc-----attccacccagggggcaaca
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=-15937.000000
s hg38.chr5_KI270793v1_alt     86198 49 +    126136 GTTTG-----TTACCTGaaaaaaaaaac---------------------aaaaacaaaaacaaaaCTTTTCAAGA
s panTro5.chr5             181350028 42 - 181907262 GTTTG----TTTATCTGaaaaaaaaaa----------------------aaaaaaaaaaaC------TTTC-AGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183066733 41 - 183735486 GTTTG-----TTATCTAGaaaaaaa------------------------aaaaaaaaaaaC-----TTTTCAAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156420 43 +    698298 GTTTG-----TTATCTGaaaaaaaaaaa---------------------aaaaaaaaaaaa------CTTCAAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583013 34 - 121039945 GTTTG-----TTATCTGA-------------------------------CAAAAAAAAAAC-----TTTTCAAAA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181273074  1 - 181584905 ---------------------------------------------------------------------T-----
i macFas5.chr6             C 0 C 0
s colAng1.NW_012118799v1      211035  1 -    514179 ---------------------------------------------------------------------T-----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                445814 41 - 204313951 GTTTG-----TTATCTGAGAAGAAA------------------------AAACAAAAACAC-----TTTTCAAGA
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1892836 60 -   2165740 gcttgaggctctgtctcaaaaaaaaaaaaaaaagaaaGAAAGAAAAAAGAAAAGAAAAGA---------------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      182487  1 -    438239 I
e chlSab2.chr4              90586768 35 -  91010382 I
e cerAty1.NW_012009470v1      284678  5 -  16742782 I
e macNem1.NW_012012389v1      279480  1 -   1764207 I
e rheMac8.chr6             179539921  1 - 180051392 I

a score=22264.000000
s hg38.chr5_KI270793v1_alt     86247 4 +    126136 AAAG
s panTro5.chr5             181350070 4 - 181907262 AAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183066774 4 - 183735486 AAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156463 4 +    698298 AAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583047 4 - 121039945 AAAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539922 4 - 180051392 AAAG
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181273075 4 - 181584905 AAAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279481 4 -   1764207 AAAG
i macNem1.NW_012012389v1   I 1 C 0
s manLeu1.NW_012110441v1      182488 4 -    438239 AAAG
i manLeu1.NW_012110441v1   I 1 C 0
s colAng1.NW_012118799v1      211036 4 -    514179 AAAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                445855 4 - 204313951 AAAG
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1892896 4 -   2165740 AAAT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I
e chlSab2.chr4              90586768 35 -  91010382 I
e cerAty1.NW_012009470v1      284678 5 -  16742782 I

a score=147563.000000
s hg38.chr5_KI270793v1_alt     86251 42 +    126136 CACCTAAGAAGATGAAGTGGGAA---CGTC-ATGTGGTGGGCA---CGC----
s panTro5.chr5             181350074 43 - 181907262 CACCTAAGAAGATGCAGTCGGAA---CGTCAATGTGGTGGGCA---CGC----
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183066778 42 - 183735486 CACCTAAGAAGATGAAGTGGGAA---CGTC-ATGTGGTGGGCA---CGC----
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156467 45 +    698298 CACCTAAGAAGATGAAGTGGGAA---CGTC-ATGTGGTGGGCACGCCGC----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583051 37 - 121039945 CACCTGAGGAGATGCAGTGGGAA---CGTC-CTGTGGTGGG------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539926 42 - 180051392 CACCTGAGGAGATGCAGTGGGAA---CGCC-ATGTGGTGGGCA---CGC----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273079 42 - 181584905 CACCTGAGGAGATGCAGTGGGAA---CGCC-ATGTGGTGGGCA---CGC----
i macFas5.chr6             C 0 T 14
s macNem1.NW_012012389v1      279485 42 -   1764207 CACCTGAGGAGATGCAGTGGGAA---CGCC-ATGTGGTGGGCA---TGC----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284683 42 -  16742782 CACCTGAGGAGATGCAGTGGGAA---CGCC-ATGTGGTGGGCA---CGC----
i cerAty1.NW_012009470v1   I 5 C 0
s manLeu1.NW_012110441v1      182492 42 -    438239 CACCTGAGGAGATGCAGTGGGAA---CGCC-ATGTGGTGGGCA---CGC----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      211040 42 -    514179 CACCTGAGGAGATGCAGTGGGAA---CGCC-ATGTGGTGGGCA---CGC----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                445859  5 - 204313951 GACTT------------------------------------------------
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1892900 49 -   2165740 CATTCAAGCAGATTTGGTGGGAAACTAGCT-TTCTGGGGGCTG---TTCATAC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I
e chlSab2.chr4              90586768 35 -  91010382 I

a score=-297.000000
s hg38.chr5_KI270793v1_alt     86293 13 +    126136 -----------------CAGCTTTC---AGAGA
s panTro5.chr5             181350117 14 - 181907262 -----------------GGCCTTTCA--AGAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183066820 13 - 183735486 -----------------CGGCTTTC---AGAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156512 13 +    698298 -----------------CGGCTTTC---AGAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s colAng1.NW_012118799v1      211082 14 -    514179 -----------------CGGCTTTTC--AGAGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                445864  4 - 204313951 -----------------------------GAGA
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1892949 33 -   2165740 CCTGCACAGCTGAATGTGATCTCTCCGTGGGGA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I
e nomLeu3.chr6             120583088  0 - 121039945 C
e manLeu1.NW_012110441v1      182534  0 -    438239 C
e chlSab2.chr4              90586768 35 -  91010382 I
e cerAty1.NW_012009470v1      284725  0 -  16742782 C
e macNem1.NW_012012389v1      279527  0 -   1764207 C
e macFas5.chr6             181273121 14 - 181584905 T
e rheMac8.chr6             179539968  0 - 180051392 C

a score=15392.000000
s hg38.chr5_KI270793v1_alt     86306 11 +    126136 ---CGCGGTGGGAA
s panTro5.chr5             181350131 11 - 181907262 ---TGCGGTGGGAA
i panTro5.chr5             C 0 I 132
s panPan2.chr5             183066833 11 - 183735486 ---TGCGGTGGGAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156525 11 +    698298 ---CGCGGTGGGAA
i gorGor5.CYUI01015805v1   C 0 I 28
s macFas5.chr6             181273107 11 - 181584905 ---TGTGGTGGGCA
i macFas5.chr6             T 14 C 0
s colAng1.NW_012118799v1      211096 11 -    514179 ---TGCGGTGGGAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                445868 11 - 204313951 ---CGCGGTGGGAA
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1892982 13 -   2165740 CAGGGCATGGGGC-
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I
e nomLeu3.chr6             120583088  0 - 121039945 C
e manLeu1.NW_012110441v1      182534  0 -    438239 C
e chlSab2.chr4              90586768 35 -  91010382 I
e cerAty1.NW_012009470v1      284725  0 -  16742782 C
e macNem1.NW_012012389v1      279527  0 -   1764207 C
e rheMac8.chr6             179539968  0 - 180051392 C

a score=11894.000000
s hg38.chr5_KI270793v1_alt     86317 31 +    126136 CGTCAGCCTTTCAGAGATGCGGTGGG--AACGT
s panPan2.chr5             183066844 31 - 183735486 CGTCAGCCTTTCAGAGACGCGGTGGG--AACGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156564 31 +    698298 CGTCAGCCTTTCAGAGACGCGGTGGG--AACGT
i gorGor5.CYUI01015805v1   I 28 C 0
s nomLeu3.chr6             120583088  5 - 121039945 ----------------------------AACAT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181273118 31 - 181584905 CGCCAGCTTTTCAGAGATGCGGTGGG--CACAC
i macFas5.chr6             C 0 T 28
s colAng1.NW_012118799v1      211107 31 -    514179 CATCGCCTTTTCAGAGATGCGGTGGG--AACAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                445879  5 - 204313951 ---CAGCC-------------------------
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1892995 32 -   2165740 GCCCAGCCTGGCTGGCAGG-GGTGGGCAGACAT
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181350142 132 - 181907262 I
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      182534  0 -    438239 C
e chlSab2.chr4              90586768 35 -  91010382 I
e cerAty1.NW_012009470v1      284725  0 -  16742782 C
e macNem1.NW_012012389v1      279527  0 -   1764207 C
e rheMac8.chr6             179539968  0 - 180051392 C

a score=45502.000000
s hg38.chr5_KI270793v1_alt     86348 16 +    126136 CAGCCTTTCAG-----AGAC----------------------------A
s panPan2.chr5             183066875 16 - 183735486 CAGCCTTTCAG-----AGAC----------------------------G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156595 44 +    698298 CAGCCTTTCAG-----AGACGCGGTGCGAACGTCAGCCTTTCAGAGATG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583093 16 - 121039945 CAGCCTTTCAG-----AGAC----------------------------G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539968 16 - 180051392 CAGCTTTTCAG-----AGAT----------------------------G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273121 16 - 181584905 CAGCTTTTCAG-----AGAT----------------------------G
i macFas5.chr6             T 28 C 0
s macNem1.NW_012012389v1      279527 16 -   1764207 CAGCTTTTCAG-----AGAT----------------------------G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284725 16 -  16742782 CAGCTTTTCAG-----AGAT----------------------------G
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      182534 16 -    438239 CAGCTTTTCAG-----AGAT----------------------------G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      211138 16 -    514179 CGGCTTTTCAG-----AGAT----------------------------G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                445884 14 - 204313951 --GCTTTCCAG-----AGAG----------------------------G
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1893027 19 -   2165740 GAGCTCCTGAGGCCTCAAA------------------------------
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181350142 132 - 181907262 I
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I
e chlSab2.chr4              90586768 35 -  91010382 I

a score=157760.000000
s hg38.chr5_KI270793v1_alt     86364 31 +    126136 CGGTGGGCACCCCAGCTTTTCAGGGGCTTTT
s panPan2.chr5             183066891 31 - 183735486 CGGTGGGCACCCCGGCTTTTCAGGGGCTTTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156639 31 +    698298 CGGTGGGCACCCCGGCTTTTCAGGGGCTTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583109 31 - 121039945 CGGTGGGCACGCCGGCTTTTCAGGGGCTTTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179539984 31 - 180051392 CGGTGGGCACGCCGGCTTTTCAGGGGCTTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273137 31 - 181584905 CGGTGGGCACACCGGCTTTTCAGGGGCTTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279543 31 -   1764207 CGGTGGGCACGCCGGCTTTTCAGGGGCTTTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284741 31 -  16742782 CGGTGGGCACGCCGGCTTTTCAGGGGCTTTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90586803 31 -  91010382 CGGTGGGAACACCGGCTTTTCAGGGGCTTTT
i chlSab2.chr4             I 35 C 0
s manLeu1.NW_012110441v1      182550 31 -    438239 CGGTGGGCACTCCGGCTTTTCAGGGGCTTTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      211154 20 -    514179 CGGTGGGCACGCCGGCTTTT-----------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                445898 31 - 204313951 CGGTGGGCACTCTGGCTTTCCAGGGGCTTTT
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1893046 31 -   2165740 ATGCTAGCAACCCACCTCCATATGGGAACAT
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181350142 132 - 181907262 I
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=64518.000000
s hg38.chr5_KI270793v1_alt     86395 67 +    126136 CAGGGTCGTCCTTGCCCTGCACGTGGGACCAGGACCG-ATGTTCACCTGCTGGAAACTTG----------GGTCTCAG
s panPan2.chr5             183066922 67 - 183735486 CAGGGTCGTCCTTGCCCTGCACGTGGGACCAGGACCG-ATGTTCACCTGCTGGAAACTTG----------GGTCCCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156670 67 +    698298 CAGGGTCGCCCTAACCCTGCACGTGGGACCAGGACCA-ATGTTCACCTGCTGGCAACTTA----------GGTCTCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583140 77 - 121039945 CAGGGTCGTCCTTGCCCTGAACGTGGGACCGGGACCG-ATGTTCACCTGCTGGAAATGTGGGCGTCGACAGGTCTCAG
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      211174 77 -    514179 CAGGGTCATCCTTGCCCTGCACGTGGGACCAGGCCCG-ATGTTCACCCCCTGGAAAAGTGAGCAACCGCAGGTCTCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2                445929 67 - 204313951 CAGGGTGGCCCTTGCTCTGCATGTGGCACCAGGCCTGAATGCGCACGC-CTGGAAACGTG----------GGGCTCGG
i calJac3.chr2             C 0 n 0
s otoGar3.GL873745           1893077 58 -   2165740 -GGGGCCACACT---CCTGCCTGTTGGGCAGGCACAGGACAGCCACCTGC------CATC----------GGTCTCAG
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181350142 132 - 181907262 I
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      182581  0 -    438239 C
e chlSab2.chr4              90586834  0 -  91010382 C
e cerAty1.NW_012009470v1      284772  0 -  16742782 C
e macNem1.NW_012012389v1      279574  0 -   1764207 C
e macFas5.chr6             181273168  0 - 181584905 C
e rheMac8.chr6             179540015  0 - 180051392 C

a score=43069.000000
s hg38.chr5_KI270793v1_alt     86462 38 +    126136 CCAGTGCAGGCCCCTCCCATGCCCCAGAGATGGGAAAA
s panPan2.chr5             183066989 38 - 183735486 CCAGTGCAGGCCCCTCCCATGCCCCAGAGATGGGAAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156737 38 +    698298 CCAGTGCAGGCTCCTCCCATGCCCCAGAGATGGGAAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583217 38 - 121039945 TCAGTGCAGGCCCCTCCCATGCTCCAGAGATGGGAAAA
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      211251 38 -    514179 CCAGTGCAGGCCCCTCCCACGCCCCAGAGATGGGAAAA
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1893135 37 -   2165740 CCAACTCTGGCCTCTCCCACAC-CCAAAGGTGGGGAAA
i otoGar3.GL873745         C 0 C 0
e panTro5.chr5             181350142 132 - 181907262 I
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996  0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      182581  0 -    438239 C
e chlSab2.chr4              90586834  0 -  91010382 C
e cerAty1.NW_012009470v1      284772  0 -  16742782 C
e macNem1.NW_012012389v1      279574  0 -   1764207 C
e macFas5.chr6             181273168  0 - 181584905 C
e rheMac8.chr6             179540015  0 - 180051392 C

a score=80419.000000
s hg38.chr5_KI270793v1_alt     86500 64 +    126136 GGGGC--------------------TTCTCCCGGACCT-TGGGCTCCTTCGTCCTCTGCTCAGG-GCTGG-GAGCTGAGGTCGGTGC
s panTro5.chr5             181350274 64 - 181907262 GGGGC--------------------TTCTCCCGGCCCT-TGGGCTCCTTCGTCCTCTGCTCAGG-GCTGG-GAGCTGAGGTCGGTGC
i panTro5.chr5             I 132 C 0
s panPan2.chr5             183067027 64 - 183735486 GGGGC--------------------TTATCCCGGCCCT-TGGGCTCCTTCGTCCTCTGCTCAGG-GCTGG-GAGCTGAGGTCGGTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156775 64 +    698298 GGGGC--------------------TTCTCCTGGCCCT-TGGGCTCCTTCGTCCTCTGCTCAGG-GCTGG-GAGCTGAGGTCGGTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583255 64 - 121039945 GGGGC--------------------CTCTCCCGGCCCT-CTGGCTCCTTTGTCCTCTGCTCAGG-GCCGG-AAGCTGAAGTCGGTGC
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      211289 64 -    514179 GGGGC--------------------CACTCCCCGCCCT-CAGGCTCCTTCCTCCTCTGCCCGGG-GCTGA-GAGCTGAGGTCGGTGC
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1893172 87 -   2165740 GGGGCCAGTGGTGGGATCTGGTGGGTTTTCTCTCCCCTGTATATTCTTTCACCATTTGCTTAGATGCTAATGAGCTGAGGCCTAACC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996  0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      182581  0 -    438239 C
e chlSab2.chr4              90586834  0 -  91010382 C
e cerAty1.NW_012009470v1      284772  0 -  16742782 C
e macNem1.NW_012012389v1      279574  0 -   1764207 C
e macFas5.chr6             181273168  0 - 181584905 C
e rheMac8.chr6             179540015  0 - 180051392 C

a score=141668.000000
s hg38.chr5_KI270793v1_alt     86564 156 +    126136 -CTCAGATGCCCCACCTGCCCCT-TCCACCTGAGAGCTTCAAACAGAGTG-GACAGCACCGACTCCCACAGCACAGCCAGAGTCCTAGGAAGGCACCGCGGTTGTG-CCATTTTCTCCCTGCCTCACTGAGGGCCTGTGCTTGAGCTTCTCACCAGCAGC
s panTro5.chr5             181350338 156 - 181907262 -CTCAGACGCCCCACCTGCCCCT-TCCACCTGAAAGCCTCAAACAGAGCC-GACAGCACCGACTCCCACAGCACAGCCAGAGTCCTAGGAAGGCACCGAGGTTGTG-CCATTTTCTCCCCGCCTCACTGAGGGCCTGTGCTTGAGCTTATCACCAGCAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183067091 156 - 183735486 -CTCAGACGCCCCACCTGCCCCT-TCCACCTGAAAGCCTCAAACAGAGCC-GACAGCACCGACTCCCACAGCACAGCCAGAGTCCTAGGAAGGCACCGAGGTTGTG-CCATTTTCTCCCCGCCTCACTGAGGGCCTGTGCTTGAGCTTATCACCAGCAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156839 156 +    698298 -CTCAGACGCCCCACCTGCCCCT-TCCACCTGAGAGCCTCAAACAGAGCG-GACGGCACCGACTCCCACAGCACAGCCAGAGTCCTAGGAAGGCACCGCGGTTGTG-CCATTTTCTCCCTGCCTCACTGAGGGCCTGTGCATGAGCTTCTCACCAGCAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583319 156 - 121039945 -CTCAGACGCCCCACCTGCCCCT-TCCACCTGAGAGCCTCAAACAGAGGG-GACGGCACCGACTCCCACAGCGCAGCCAGAGTCCTAGGAAGGCACCGCAGTTGTG-CCATTTTCTCCCAGCCTCACTGAGGGCCTGTGCTTCAGCTTCTCACCAGCAGC
i nomLeu3.chr6             C 0 C 0
s otoGar3.GL873745           1893259 129 -   2165740 ATCAAGACTCCTAAAGTGCCCCTCTCCTCTCATGACCCTCAAATATAATGTGGCCACACC--------------------AGTAGTAAGAATGCATCATGATCGGGTTCAATTTACCCCAGTTGCAAATGTGGTCTGTACCTG-----------AGTAGT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996   0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      182581   0 -    438239 C
e chlSab2.chr4              90586834   0 -  91010382 C
e cerAty1.NW_012009470v1      284772   0 -  16742782 C
e colAng1.NW_012118799v1      211353   0 -    514179 C
e macNem1.NW_012012389v1      279574   0 -   1764207 C
e macFas5.chr6             181273168   0 - 181584905 C
e rheMac8.chr6             179540015   0 - 180051392 C

a score=43402.000000
s hg38.chr5_KI270793v1_alt     86720 25 +    126136 CCCGTCCCTTGCCTGCAGCTGAGGG
s panTro5.chr5             181350494 25 - 181907262 CCCGTCCCTTGCCTGCAGCTGAGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183067247 25 - 183735486 CCCGTCCCTTGCCTGCAGCTGAGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      156995 25 +    698298 CCCGTCCCTTGCCTGCAGCTGAGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583475 25 - 121039945 CCCATCCCTTGCCTGCAGCTGAGGG
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      211353 25 -    514179 CCCGTCCCCTGCCTGCAGCTGAGGG
i colAng1.NW_012118799v1   C 0 M 130
s otoGar3.GL873745           1893388 25 -   2165740 TCTGTTACCTGCCTGCAGCTGACAG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996  0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      182581  0 -    438239 C
e chlSab2.chr4              90586834  0 -  91010382 C
e cerAty1.NW_012009470v1      284772  0 -  16742782 C
e macNem1.NW_012012389v1      279574  0 -   1764207 C
e macFas5.chr6             181273168  0 - 181584905 C
e rheMac8.chr6             179540015  0 - 180051392 C

a score=48250.000000
s hg38.chr5_KI270793v1_alt     86745 42 +    126136 TGATGCTCCCTCCCGG---GGTCAGCCTAGGG-CCCCGGCCCCTCC
s panTro5.chr5             181350519 42 - 181907262 TGATGCTCCCTCCCGG---GGTCAGCCTAGGg-ccccggcccctcc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183067272 42 - 183735486 TGATGCTCCCTCCCGG---GGTCAGCCTAGGg-ccccggcccctcc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      157020 42 +    698298 TGATGCTCCCTCCCGG---GGTCAGCCTAGGG-CCCCGGCCCCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583500 42 - 121039945 TGATGCTCCCTCCCGG---GGTCAGCCTAGGG-CCCCGGCCCCTCT
i nomLeu3.chr6             C 0 C 0
s otoGar3.GL873745           1893413 40 -   2165740 TGATG------CCAGGAATGGTCAGCCTGGGGACCCCAGCCCCTCC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996  0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      182581  0 -    438239 C
e chlSab2.chr4              90586834  0 -  91010382 C
e cerAty1.NW_012009470v1      284772  0 -  16742782 C
e colAng1.NW_012118799v1      211378 130 -    514179 M
e macNem1.NW_012012389v1      279574  0 -   1764207 C
e macFas5.chr6             181273168  0 - 181584905 C
e rheMac8.chr6             179540015  0 - 180051392 C

a score=865368.000000
s hg38.chr5_KI270793v1_alt     86787 666 +    126136  
s panTro5.chr5             181350561 666 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183067314 666 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      157062 665 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120583542 667 - 121039945  
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      211508 666 -    514179  
i colAng1.NW_012118799v1   M 130 I 21
s otoGar3.GL873745           1893453 499 -   2165740  
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996   0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I
e manLeu1.NW_012110441v1      182581   0 -    438239 C
e chlSab2.chr4              90586834   0 -  91010382 C
e cerAty1.NW_012009470v1      284772   0 -  16742782 C
e macNem1.NW_012012389v1      279574   0 -   1764207 C
e macFas5.chr6             181273168   0 - 181584905 C
e rheMac8.chr6             179540015   0 - 180051392 C

a score=290359.000000
s hg38.chr5_KI270793v1_alt     87453 51 +    126136 CAGAGGGGGTGGAGGAGGGGACCAAACCCTTCCTGGTCCCTCAACACCCCC
s panTro5.chr5             181351227 51 - 181907262 CAGAGGGGGTGGAGGAGGGGACCAAACCCTTCCTGGTCCCTCGACACCCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183067980 51 - 183735486 CAGAGGGGGTGGAGGAGGGGACCAAACCCTTCCTGGTCCCTCGACACCCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      157727 51 +    698298 CAGAGGGGGTGGAGGAGGGGACCAAACCCTTCCTGGTCCCTCGACACCCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120584209 51 - 121039945 CAGAGGGGGTGAAGGAGGGGACCAAACCCTTCTTGGCCCCTTGACACCCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540015 51 - 180051392 CAGAGGGAGTGGAGGAGGGGACCAAACCCTTCCTGACTCCTCAACACCCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273168 50 - 181584905 CAGAGGGAGTGGAGGAGGGGACCAAACCCTTCCTGACTCCTCAACACCCC-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279574 51 -   1764207 CAGAGGGAGTGGAGGAGGGGACCAAACCCTTCCTGACTCCTCAACACCCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284772 51 -  16742782 CAGAGGGAGTGGAGGAGGGGACCAAACTCTTCCTGACTCCTCAACACCCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90586834 51 -  91010382 CAGAGGGAGTGGAGGAGGGGACCAAACCCTTCCTGACTCCTCAGCACCCCC
i chlSab2.chr4             C 0 I 137
s manLeu1.NW_012110441v1      182581 51 -    438239 CAGAGGGAGTGGAGGAGGGGACCAAACTCTTCCTGACTCCTCAACACCCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      212195 51 -    514179 CAGAGGGAGTGGAGGAGGGGACCAAACCCTTCCTGACTCCTCAACACCTCC
i colAng1.NW_012118799v1   I 21 C 0
s otoGar3.GL873745           1893952 38 -   2165740 CAGGGATGGTCAGCGTGGGGACCA-------------TCGTCCACAGGCTC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996  0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=15510.000000
s hg38.chr5_KI270793v1_alt     87504 3 +    126136 CTG
s panTro5.chr5             181351278 3 - 181907262 CTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183068031 3 - 183735486 CTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      157778 3 +    698298 CTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120584260 3 - 121039945 CTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540066 3 - 180051392 CTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273218 3 - 181584905 CCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279625 3 -   1764207 CTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284823 3 -  16742782 CTG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      182632 3 -    438239 CTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      212246 3 -    514179 CTG
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1893990 3 -   2165740 CTT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996 0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I
e chlSab2.chr4              90586885 137 -  91010382 I

a score=288032.000000
s hg38.chr5_KI270793v1_alt     87507 50 +    126136 CTGCACCAAGAGGTTGTGCAAAAGAGCCGGCATGT---CCTGCAGAGCCTGCG
s panTro5.chr5             181351281 50 - 181907262 CTGCACCAGAAGGTTGTGCAGAAGGGCCGGCATGT---CCTGCAGAGCCTGCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183068034 50 - 183735486 CTGCACCAGAAGGTTGTGCAGAAGGGCCGGCATGT---CCTGCAGAGCCTGCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      157781 50 +    698298 CTGCACCAGGAGGTTGTGCAGAAGAGCCCGCTTGT---CCTGCAGAGCCTGCG
i gorGor5.CYUI01015805v1   C 0 I 217
s nomLeu3.chr6             120584263 50 - 121039945 CTGCACCAGGAGGTTGTGCAGAAGAGCTGGCGTGT---CTTGTAGAGCCTGCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540069 50 - 180051392 CTGCACCAGGAGGTTGTGCAGAAGAGCTGGCATGT---CCTGCAGAGCCTGCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273221 50 - 181584905 CTGCACCAGGAGGTTGTGCAGAAGAGCTGGCATGT---CCTGCAGAGCCTGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279628 50 -   1764207 CTGCACCAGGAGGTTGTGCAGAAGAGCTGGCATGT---CCTGCAGAGCCTGCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284826 50 -  16742782 CTGCACCAGGACGTTGTGTAGAAGAGCTGGCATGT---CCTGCAGAGCCTGCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90587022 50 -  91010382 CTGCACCAGGAGGTTGTGCAGAAGAGCTGGCATGT---CCTGCAGAGCCTGCG
i chlSab2.chr4             I 137 C 0
s manLeu1.NW_012110441v1      182635 50 -    438239 CTGCACCAGGAGGTTGTGCAAAAGAGCTGGCATGT---CCTGCAGAGCCTGCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      212249 50 -    514179 CTGCACCAGAAGGTTGTGCAGAAGAGCTGGCATGT---CCTGCAGAGCCTGCG
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1893993 39 -   2165740 --------------TTCCCAAAGTAGCCAGCTGGTAGCCCACCTGGTCCTGGG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996  0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=28463.000000
s hg38.chr5_KI270793v1_alt     87557 8 +    126136 GGTCACGT
s panTro5.chr5             181351331 8 - 181907262 GGTCACGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183068084 8 - 183735486 GGTCACGT
i panPan2.chr5             C 0 I 131
s gorGor5.CYUI01015805v1      158048 8 +    698298 GGTCACGT
i gorGor5.CYUI01015805v1   I 217 C 0
s nomLeu3.chr6             120584313 8 - 121039945 GGTCACCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540119 8 - 180051392 GGTCACCG
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181273271 8 - 181584905 GGTCACCG
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      279678 8 -   1764207 GGTCACCG
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      284876 8 -  16742782 GGTCACCG
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90587072 8 -  91010382 GGTCACTG
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      182685 8 -    438239 GGTCACCG
i manLeu1.NW_012110441v1   C 0 I 1
s colAng1.NW_012118799v1      212299 8 -    514179 GGTCACCA
i colAng1.NW_012118799v1   C 0 I 1
s otoGar3.GL873745           1894032 1 -   2165740 -G------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996 0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=77130.000000
s hg38.chr5_KI270793v1_alt     87565 17 +    126136 GTGTTAACAGGAGCGGG
s panTro5.chr5             181351339 17 - 181907262 GTGTTAACAGGAGTGGG
i panTro5.chr5             C 0 I 393
s panPan2.chr5             183068223 17 - 183735486 GTGTTAACAGGAGCGGG
i panPan2.chr5             I 131 C 0
s gorGor5.CYUI01015805v1      158056 17 +    698298 GTGTTAACAGGAGCGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120584321 17 - 121039945 GTGTTAACAGGAGCGAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540128 17 - 180051392 ATGTTGAGAGGAGCGGG
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181273280 17 - 181584905 ATGTTGAGAGGAGCGGG
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      279687 17 -   1764207 ATGTTGAGAGGAGCGGG
i macNem1.NW_012012389v1   I 1 C 0
s cerAty1.NW_012009470v1      284885 16 -  16742782 ATGTTGAGAGGAGC-AG
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90587081 17 -  91010382 ATGTTGAGAGGAGCGGG
i chlSab2.chr4             I 1 C 0
s manLeu1.NW_012110441v1      182694 16 -    438239 ATGTTGAGAGGAGC-AG
i manLeu1.NW_012110441v1   I 1 C 0
s colAng1.NW_012118799v1      212308 17 -    514179 ATGTTGAGAGGAGTGGG
i colAng1.NW_012118799v1   I 1 C 0
s otoGar3.GL873745           1894033 12 -   2165740 -----AGCAGGGACGAG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996  0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=4095.000000
s hg38.chr5_KI270793v1_alt     87582 1 +    126136 A
s panPan2.chr5             183068240 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      158073 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 I 43
s rheMac8.chr6             179540145 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273297 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279704 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284901 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90587098 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      182710 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      212325 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
e panTro5.chr5             181351356 393 - 181907262 I
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e otoGar3.GL873745           1894045 0 -   2165740 C
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996 0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I
e nomLeu3.chr6             120584338 0 - 121039945 C

a score=247340.000000
s hg38.chr5_KI270793v1_alt     87583 43 +    126136 TGCTTCCCTCCCGGCTGTGTCTGTCCAAGGCCGAGCATGGTCC
s panTro5.chr5             181351749 43 - 181907262 TGCTTCCCTCCCGGCTGTGTCTGTCCAAGGCCAAGCATGGTCC
i panTro5.chr5             I 393 C 0
s panPan2.chr5             183068241 43 - 183735486 TGCTTCCCTCCCGGCTGTGTCTGTCCAAGGCCAAGCATGGTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      158117 43 +    698298 TGCTTCCCTCCCGGCTGTGTCTGTCCAAGGCCGAGCATGGTCC
i gorGor5.CYUI01015805v1   I 43 C 0
s nomLeu3.chr6             120584338 43 - 121039945 TGCTTCCCTCCCGGCTGTGTCTGTCCAAGGCGGAGCGTGGGCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540146 43 - 180051392 TGCTTCCCTCCTGGCTGTGTCCGTCCAAGGCCAAGCATGGTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273298 43 - 181584905 TGCTTCCCTCCTGGCTGTGTCCGTCCAAGGCCAAGCATGGTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279705 43 -   1764207 TGCTTCCCTCCTGGCTGTGTCCGTCCAAGGCCAAGCATGGTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284902 43 -  16742782 TGCTTCCCTCCCGGCTGTGTCCGTCCAAGGCCGAGCATGGTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90587099 43 -  91010382 TGTTTCCCTCTCGGCTGTGTCCGTCCAAGGCCGAGCATGGTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      182711 43 -    438239 TGCTTCCCTCCCGGCTGTGTCCGTCCAAGGCCGAGCATGGTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      212326 43 -    514179 TGCTTTCCTCCTGGCTGTGTCCGTCCAAGGCTGAGCATGGTCC
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1894045 20 -   2165740 -----CCCTCT------------------GCCAGGTATCCTTC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996  0 - 204313951 I
e canFam3.chr34             11729190 4015 +  42124431 I

a score=969944.000000
s hg38.chr5_KI270793v1_alt     87626 165 +    126136 AAGCCCCTGTGAGGCCCCG---CAATGCATATCAGGACCCCTCAGCTGCACACATTGTTGCTTTTA--TTATTATTATTGGAGATGAAATCATAGCACATCTGGGATGGCTTCAAAGTCGTCCTGGAGAGAAGGACGGGGC-AGCAGG-CCAGGAGGGAGACGGGCATTAGG
s panTro5.chr5             181351792 165 - 181907262 AAGCCCCTGTGAGGCCCTG---CACTGCATATCAGGACCCCTCAGCTGCACACATTGTTGCTTTTA--TTATTATTCTTGGAGATGAAATCATAGCACGTCTGGGATGGCTTCAAAGTCGTCCTGGAGAGAAGGACGGGGC-AGCAGG-CCAGGAGGGAGACAGGCATTAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183068284 165 - 183735486 AAGCCCCTGTGAGGCCCTG---CACTGCATATCAGGACCCCTCAGCTGCACACATTGTTGCTTTTA--TTATTATTCTTGGAGATGAAATCATAGCACGTCTGGGATGGCTTCAAAGTCGTCCTGGAGAGAAGGACGGGGC-AGCAGG-CCAGGAGGGAGACGGGCATTAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      158160 165 +    698298 AAGCCCCTGTGAGGCCCCG---CAATGCATATCAGGACCCCTCAGCTGCACACATTGTTGCTTTTA--TTATTATTCTTGGAGATGAAATCATAGCACGTCTGGGATGGATTCAAAGTCGTCCTGGAGAGAAGGATGGGGC-AGCAGG-CCAGGAGGGAGACGGGCATTAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120584381 166 - 121039945 AAGCTCCTGTGAGGCCCCA---CACTGCACATCAGGACCCCTCAGCTGCACACATTGTTGCTTTTA--TTATTATTATTGGAGATGAAATCATAGCACGTCTGGGATGGCTTCAAAGCCATCCTGGAGAGAAGGACGGGGC-AGCAGGTCCCGGAGGGAGACGGGCATTAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540189 166 - 180051392 AAGCTCCTGTGACGCCCTG---CACTGCACATTAGGACCCCTCAGTTGCACACATTGTTGCTTTTA--TTATTATTATTGGGGATGAAATCATAGCACTTCTGGGATGGCTTCAAAGCCATCTTGGAGAGAAGGATGGGGC-AGCAGGCCCAGGAGGGAGATGGGCATTAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273341 166 - 181584905 AAGCTCCTGTGACGCCCTG---CACTGCACATTAGGACCCCTCAGTTGCACACATTGTTGCTTTTA--TTATTATTATTGGGGATGAAATCATAGCACTTCTGGGATGGCTTCAAAGCCATCTTGGAGAGAAGGATGGGGC-AGCAGGCCCAGGAGGGAGATGGGCATTAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279748 166 -   1764207 AAGCTCCTGTGACGCCCTG---CACTGCACATTAGGACCCCTCAGTTGCACACATTGTTGCTTTTA--TTATTATTATTGGGGATGAAATCATAGCACTTCTGGGATGGCTTCAAAGCCATCTTGGAGAGAAGGATGGGGC-AGCAGGCCCAGGAGGGAGATGGGCATTAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      284945 166 -  16742782 AAGCTCCTGTGACGCCCCG---CACTGTGCATTAGGACCCCTCAGTTGCACACATTGTTGCTTTTA--TTATTATTATTGGGGATGAAATCATAGCCCTTCTGGGATGGCTTCAAAGCCATCTTGGAGAGAAGGACAGGGC-AGCAGGCCCAGGAGGGAGACGGGCATTAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90587142 166 -  91010382 AAGCTCCTGTGATGCCCTG---TACTGCACATTAGGACCCCTCAGTTGCACACATTGTTGCTTTTA--TTATTATTATTGGGGATGAAATCATAGCACTTCTGGGATGGCTTCAAAGCCATCTTGGAGAGAAGGACGGGGC-AGCAGGCCCAGGAGGGGGACGGGCATTAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      182754 166 -    438239 AAGCTCCTGTGACGCCCCG---CACTGCACATTAGGACCCCTCAGTTGCACACGTTGTTGCTTTTA--TTATTATTATTGGGGATGAAACCATAGCCCTTCTGGGATGGCTTCAGAGCCATCTTGGAGAGAAGGACGGGGC-AGCAGGCCCAGGAGGGAGACGGGCATTAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      212369 166 -    514179 AAGCTCCTGTGACGCCCTG---CACTGCACATTAGGACCCCTCAGTTGCACACATTGTTGCTTTTA--TTATTATTATTGGGGATGAAATCATAGCACATCTGGGATGGCTTCAAAGCCATCCTGGAGAGAAGGACGGGGC-AGCAGGCCCAGGAGGGAGACGGGCATTAGG
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1894065  97 -   2165740 AGACCT-------GTCCTC---TGCAGCCCACTAGGCCAActca-------------------------------tactg-------------------tctgggatggcttcaaaatagtcctggaga-aggcctgggcc-agcagg-----------gctgggc--tGCG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11733205 144 +  42124431 AAGCTCTTGGGACGCCTCGGCCCACTGCTCACCA---CCCTTCTGGT-----TACTGTTGTTGCTACCCTGTTATTATTGTGCATGAAATGGTCGTGCGTCTGGGGTGGCTTC---------------AGAATAATGGGGCAAGCAGG-----GAGGGGGATGTGCCTCTGG
i canFam3.chr34            I 4015 I 984
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996   0 - 204313951 I

a score=2740248.000000
s hg38.chr5_KI270793v1_alt     87791 495 +    126136  
s panTro5.chr5             181351957 496 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183068449 496 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      158325 495 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120584547 496 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540355 463 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273507 463 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      279914 463 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      285111 463 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90587308 463 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      182920 463 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      212535 463 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1894162 475 -   2165740  
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e saiBol1.JH378155          16025013 1609 +  16417988 I
e calJac3.chr2                445996   0 - 204313951 I
e canFam3.chr34             11733349 984 +  42124431 I

a score=62383.000000
s hg38.chr5_KI270793v1_alt     88286 10 +    126136 ---------TGAGGGGGCA
s panTro5.chr5             181352453 10 - 181907262 ---------TGAGGGGGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183068945 10 - 183735486 ---------TGAGGGGGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      158820 10 +    698298 ---------TGAGGGGGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120585043 10 - 121039945 ---------TGAGGGGGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540818 10 - 180051392 ---------TGAGAGGGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273970 10 - 181584905 ---------TGAGAGGGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      280377 10 -   1764207 ---------TGAGAGGGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      285574 10 -  16742782 ---------TGAGGGGGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90587771 10 -  91010382 ---------TGAGGGGGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      183383 10 -    438239 ---------TGAGGGGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      212998 10 -    514179 ---------TGAGGGGGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203872430 10 + 204313951 ---------TGTGAGAGCA
i calJac3.chr2             I 5470 C 0
s saiBol1.JH378155          16026622 10 +  16417988 ---------TGTGAGAGCA
i saiBol1.JH378155         I 1609 C 0
s otoGar3.GL873745           1894637 10 -   2165740 CCTATGCCCT---------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e cebCap1.NW_016108158v1      109772 2663 +    298490 I
e canFam3.chr34             11733349 984 +  42124431 I

a score=919448.000000
s hg38.chr5_KI270793v1_alt     88296 108 +    126136 -TCCGGGCAGCTCCCCAGAGCGGGTGAGGGGC------CCAGAGGGGGAGCCTGGCCCGCCAGGGAGGCAGGGGGTCTGCAGAGGCAGCTGCCGACACAACTGGGACAGCCCTCT
s panTro5.chr5             181352463 108 - 181907262 -TCCGGGCAGCTCCCCAGAGCGGGTGAGGGGC------CCAGAGGGGGAGCCTGGCCTGCCAGGGAGGCAGGGGGTCTGCAGAGGCAGCTGCCGACACAACCGGGACAGCCCTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183068955 108 - 183735486 -TCCGGGCAGCTCCCCAGAGCGGGTGAGCGGC------CCAGACGGGGAGCCTGGCCTGCCAGGGAGGCAGGAGGTCTGCAGAGGCAGCTGCCGACACAACCAGGACAGCCCTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      158830 108 +    698298 -TCCGGGCAGCTCCCCAGAGCGGGTGAGGGGC------CCAGAAGGGGAGCCTGGCCCGCCAGGGAGGCAGGGGGTCTGCAGAGGCAGCTGCCGACACAACCAGGACAGCCCTCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120585053 108 - 121039945 -TCCAGGCAGCTCCCCAGAGTGGGTGAGGGGC------CCAGAAGGGGAGCCTGGCCTGCCAGGGAGGCAGGGGGTCTGCAGAGGCAGCTGCCAACACAGTCAGGACAGCCCTCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540828 108 - 180051392 -TCCGGGCAGCTTCCCAGAGCAGGCGAGGGGC------CCAGAGGGGGAGCCTGGCCCGTCAGGGAGGCGGGGGCTCTGCAGAGGCAGCTGCCGACACAGCCAGGACAGCCCCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181273980 108 - 181584905 -TCCGGGCAGCTTCCCAGAGCAGGCGAGGGGC------CCAGAGGGGGAGCCTGGCCCGTCAGGGAGGCGGGGGCTCTGCAGAGGCAGCTGCCGACACAGCCAGGACAGCCCCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      280387 108 -   1764207 -TCCGGGCAGCTTCCCAGAGCAGGCGAGGGGC------CCAGAGGGGGAGCCTGGCCCGTCAGGGAGGCGGGGGCTCTGCAGAGGCAGCTGCCGACACAGCCAGGACAGCCCCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      285584 108 -  16742782 -TCCGGGCAGCTTCCCAGAGCAGGCGAGGGGC------CCAGAGGGGGAGCCTGGCCCGTCAGGGAGGCGGGGGCTCTGCAGAGGCAGCTGCCGACACAGCCAGGACAGCCCCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90587781 107 -  91010382 -TCTGGGC-GCTTCCCAGAGCAGGCGAGGGGC------CCAGAGGGGGAGCCTGGCCCGTCAGGGAGGCGGGGGCTCTGCAGAGGCAGCTGCCGACACAGCCAGGACAGCCCCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      183393 106 -    438239 -TCCGGGCAGCTTCCCAGAGCAGGCGAGGGGC------CCAGAGGGGGAGCTTGGCCCGTCAGGGAGGCGGGGGCTCTGC--AGGCAGCTGCCGACACAGCCAGGACAGCCCCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      213008 108 -    514179 -TCTGGGCAGCTTCCCAGAGCAGGCGAGGGGC------CCAGAGTGGGAGCCTGGCCTGTCAGGGAGGCGGGGGCTCTGCAGAGGCAGCTGCCGACACAGCCAGGACGGCCCCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203872440 107 + 204313951 -CCGAGGCAGCTCCTCAGATCGGGTGAGGGGC------CCAGAGGGGGAGCCTGGCCAGCCAGGGAAGCGGGGG-TCTGCAGAGGCAGCTGCGGACACAGCCAGGGCAGCCCCCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16026632 104 +  16417988 -TCCAGGCAGCTCCTCAGA---GATGAGGGGC------CCAGAGGGGGAGCCCGGCCAGCCAGGGAGGCGGGGG-TCTGCAGAGGCAGCTTCAGACACAGCCGGGACGGCCCCCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      112435 107 +    298490 -TCCAGGCAGCTCCTCAGAGTGGGTGAGGGGC------CCAGAGGGGAAGCCCGACCAGCCGGGGAGGCAGGGG-TCTGCAGAGGCAGCTGCAGACACGGCCGGGACGGCCCCCT
i cebCap1.NW_016108158v1   I 2663 C 0
s otoGar3.GL873745           1894647  85 -   2165740 TATTGAGCAGCTCCTAAGGGTGGGAGAGGAGCTAGAGACCAGATG----GCCTG---TGCCAGAGA----------------AAGC--CTGTCGGTGC-----TGGCAGCCTCCT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25438455 1852 -  25620257 I
e canFam3.chr34             11733349 984 +  42124431 I

a score=1026715.000000
s hg38.chr5_KI270793v1_alt     88404 105 +    126136 TGAATGGAAGCCTCTG-------GGTGGCTGTTGGCA---GTGCGTGGCACACAACACAATGAATGTCTACATAAACATTAATTAGCACCAGTTAATGAATAATTACACACCCCA
s panTro5.chr5             181352571 105 - 181907262 TGAATGGAAGCCTCTG-------GGTGGCTGTTGGCA---GTGCGTGGCACACAACACAATGAATGTCTACATTAACATTAATTAGCACCAGTTAATGAATAATTACACACCCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183069063 105 - 183735486 TGAATGGAAGCCTCTG-------GGTGGCTGTTGGCA---GTGTGTGGCACACAACACAATGAATGTCTACATTAACATTAATTAGCACCAGTTAATGAATAATTACACACCCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      158938 105 +    698298 TGAATGGAAGCCTCTG-------GGTGGCTGTTGGCA---GTGTGTGGCGCACAACACAATGAATGTCTACATAAACATTAATTAGCACCAGTTAATGAATAATTACACACCCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120585161 105 - 121039945 TGAATGGAAGCCTCTG-------GGTGACTGTTGGCG---GTGCGTGGCGCGCAGCACACTATATGTCTACATACATATTAATTAGCACCAGTTAATGAATAATTCCACACCCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179540936 105 - 180051392 TGAATGGAGGCCTCTG-------GGTGGCTGTTGGCA---GTGCGTGGTGCCCAGCACCATAAATGTCTACATAAACATTAATTAGCACCAGTTAATGAATAATTTCACACCCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181274088 105 - 181584905 TGAATGGAGGCCTCTG-------GGTGGCTGTTGGCA---GTGCGTGGTGCCCAGCACCATAAATGTCTACATAAACATTAATTAGCACCAGTTAATGAATAATTTCACACCCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      280495 105 -   1764207 TGAATGGAGGCCTCTG-------GGTGGCTGTTGGCA---GTGCGTGGTGCCCAGCACCATAAATGTCTACATAAACATTAATTAGCACCAGTTAATGAATAATTTCACACCCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      285692 105 -  16742782 TGAATGGAGGCCTCTG-------GGTGGCTGTTGGCA---GTGCGTGGTGCCCAGCACCATAAATGTCTACATAAACATTAATTAGCACCAGTTAATGAATAATTTCACACCCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90587888 105 -  91010382 GGAATGGAGGCCTCTG-------GGTGGCTGTTGGCA---GTGCCTGGTGCCCAGCACCATAAATGTCTACATAAACATTAATTAGCACCAGTTAATGAATAATTTCACACCCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      183499 105 -    438239 TGAATGGAGGCCTCTG-------GGTAGCTGTTGGCA---GTGCGTGGTGCCCAGCACCATAAATGTCTACATAAACATTAATTAGCACCAGTTAATGAATAATTTCACACCCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      213116 105 -    514179 TGAATGGAAGCCTCTG-------GGTGGCTGTTGGCA---GTGCGTGGTGCCCAACATCATAAATGTCTACATAAACATTAATTAGCACCAGTTAATGAATAATTTCACACCCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203872547 105 + 204313951 TGAGTGGAAGCCTCTG-------GGTGGCCATTAGAG---GTGCGTAGCACCCAACACCATTAACGTCTACATAAACATTAATTAGCTCCAGTTAATGAATAATTCCACACCCCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16026736 105 +  16417988 TGAGTGGAAGCCTCCG-------GGTGGCTGTTAGAG---GTGAGTAGCACCCAACACCGTAAACGTCTACATAAACATTAATTAGCTCCAGTTAATGAGTAATTCCACACCCCG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      112542  96 +    298490 TGAGTGGCAGCCTCTG-------GGTGGC------------TGCGTAGCACCCAACACGATAAACGTCTACATAAACATTAATTAGCTCCAGTTAATGAATAATTCCACACCCTG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25440307 105 -  25620257 TGAGTGGAAGCCTCCG-------GGTGGCCGTTAGAG---GTGCGTAGCACCCGACACCATCGACATCTACATAAACATTAATTAGCTCCAGTTAATGAATAATTCCACACCCGA
i aotNan1.NW_018503740v1   I 1852 I 17
s otoGar3.GL873745           1894732 113 -   2165740 -TAGTGGAATCTGCAGTTGTGACTGTGGCTGTGGACAGAGGTGCATGGCGCCGGGTGCCATAAAAGGCTGCATAAACATTAATTAGCACAAGTTAATATATAATTCTGCACCCG-
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11733349 984 +  42124431 I

a score=90107.000000
s hg38.chr5_KI270793v1_alt     88509 20 +    126136 CGGTGTCGC-CCAGTGCGGAG
s panTro5.chr5             181352676 20 - 181907262 CGGTGTTGC-CCAGTGCGGAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183069168 20 - 183735486 CGGTGTCGC-CCAGTGCGGAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      159043 20 +    698298 CGGTGTCGC-CGAGTGCGGAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120585266 20 - 121039945 CGGTGTCGC-CCAGTGCGGAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179541041 10 - 180051392 -----------CAGTGCAGAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181274193 10 - 181584905 -----------CAGTGCAGAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      280600 20 -   1764207 CAGTGTCGC-CCAGTGCAGAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      285797 20 -  16742782 CAGTGTCGC-CCAGTGCAGAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90587993 20 -  91010382 CAGTGTCGC-CCTGTGCAGAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      183604 20 -    438239 CAGTGTCGC-CCAGTGCAGAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      213221 20 -    514179 CAGTGTCGC-CCAGTGCGGAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203872652 18 + 204313951 AGGTATCGCACCAGTGTG---
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16026841 18 +  16417988 AGGTATCGCACCAGTGTG---
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      112638 18 +    298490 AGGTATCGCACCAGTGTG---
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1894845 21 -   2165740 CAGTATCTCACCAGCACAATG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25440412 17 -  25620257 I
e canFam3.chr34             11733349 984 +  42124431 I

a score=1025749.000000
s hg38.chr5_KI270793v1_alt     88529 104 +    126136 CTGTCGCTTGATAAAGATTGAATG---AGAAGGACAGCAAAGCACTGATTGATAAGAGCCT-TCCCTTTTGTGATCGATGCCAAGGTCAC-GGGTGGGGAGGGGCT-GGG
s panTro5.chr5             181352696 104 - 181907262 CTGTCGCTTGATAAAGATTGAATG---AGAAGGACAGCAAAGCACTGATTGATAAGAGCCT-TCCCTTTTGTGATCGATGCCAAGGTCGC-GGGTGGGGAGGGGCT-GGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183069188 104 - 183735486 CTGTCGCTTGATAAAGATTGAATG---AGAAGGACAGCAAAGCACTGATTGATAAGAGCCT-TCCCTTTTGTGATCGATGCCAAGGTCGC-GGGTGGGGAGGGGCT-GGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      159063 104 +    698298 CTGTCACTTGATAAAGATTGAATG---AGAAGGACAGCAAAGCACGGATTGATAAGAGCCT-TCCCTTTTGTGATCGATGCCAAGGTCAC-GGGTGGGGAGGGGCT-GGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120585286 104 - 121039945 CTGTTGCTTGATAAGGATTTAATG---AGAAGGACAGCAAAGCACTGATTGATAAGAGCTT-TCCCTTTTGTGATCGATGCCAAGGTCAC-GGGTGGGGAAGAGCT-GGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179541051 105 - 180051392 CTGTTGCTTGATAAGGATTTAATG---AGAAGGACAGGAAAGCACTGATTGATAAGAGCCT-TTCCTTTTGTGATCAATGCCGACATCAC-GGGTGGGGAGGGGCTGGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181274203 105 - 181584905 CTGTTGCTTGATAAGGATTTAATG---AGAAGGACAGGAAAGCACTGATTGATAAGAGCCT-TTCCTTTTGTGATCAATGCCGACATCAC-GGGTGGGGAGGGGCTGGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      280620 105 -   1764207 CTGTTGCTTGATAAGGATTTAATG---AGAAGGACAGGAAAGCACTGATTGATAAGAGCCT-TTCCTTTTGTGATCAATGCCGACATCAC-GGGTGGGGAGGGGCTGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      285817 104 -  16742782 CTGTTGCTTGATAAGGATTTAATG---AGAAGGACAGGAAAGCACTGATTGATAAGAGCCT-TTCCTTTTGTGATCAATGCCGACATCAC-GGGTGGGGAGGGGCT-GGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90588013 101 -  91010382 CTGTTGCTTGATAAGGATTTAATG---GGAAGGACAGGAAAGCACTGATTGATAAGAGCCT-T---TTTTGTGATCAATGCCGAGGTCAC-GGGTGGGGAGGGGCT-AGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      183624 105 -    438239 CTGTTGCTTGATAAGGATTTAATG---AGAAGGACAGGAAAGCACTGATTGATAAGAGCCT-TTCCTTTTGTGATCAATGCCGACATCAC-GGGTGGGGAGGGGCTGGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      213241 105 -    514179 CTGTTGCTTGATAAGGATTTAATG---AGAAGGACAGAAAAGCACGGATTGATAAGAGCCT-TCCCTTTTGTGATCAATGCCGAGGTCAC-GGGTGGGGAGGGGCTGGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203872670 104 + 204313951 CTGTTGATGGATAAGGATTTAAAG---AGAGGGACGGGAAAGCGTGGATTGATAAGAGCTT-TCCCTTCTGTGATCGATGCCAAGGTCAC-GGGTGGGGAGCAGCT-GGG
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16026859 104 +  16417988 CAGTTGATGGATAAGGATTTAATG---AGAAGGACGGGACAGCGTGGATTGATAAGGGCCT-TCCCTTCTGTGATCGATGCCAAGGTCAC-GGGTGGGGAGCGCCT-GGG
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1      112656 104 +    298490 CTGTTGATGGATGAGGATTTAATG---AGAAGAACGGGAAAGCGTGGATTGATAAGAGCCT-TCCCTTCTGTGATCAATGCCAAGGTCAC-GGGTGGGGAGCGGCT-GGG
i cebCap1.NW_016108158v1   C 0 I 288
s aotNan1.NW_018503740v1    25440429 104 -  25620257 CTGTTGATGGATAAGGATTTAATG---AGAAGGACGGGAACGCGTGGATTGATAAGAGCCT-TCCCTTCTGTGATCGACGCCAAGGTCAC-GGGTGGGGAGCGGCT-GGG
i aotNan1.NW_018503740v1   I 17 I 57
s otoGar3.GL873745           1894866 103 -   2165740 CTATTGTTTGATAAGGATTTAATGAGAAGAAGGAAAGAAAAGCCC----TGATAAGAACCTGTTCATATTGTGATAGGTGCCAAGGTCATAAGGTGGGGTGTGA---GGA
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11733349 984 +  42124431 I

a score=533919.000000
s hg38.chr5_KI270793v1_alt     88633  84 +    126136 GGGCACAGCAGACACACC-TCGGCCGCACACCCAGGACCCGCTGCAGGGAG------------------------CCC-CGGTGCCCTGG-------------------------CCCCGGTGCAGCCCTGATGC
s panTro5.chr5             181352800  84 - 181907262 GGGCACAGCAGACACACC-TCGGCCGCACACCCAGGACCCGCTGCAGGGAG------------------------CCC-CGGTGCCCTGG-------------------------CCCCGGTGCAGCCCTGATGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183069292  84 - 183735486 GGGCACAGCAGACACACC-TCGGCCGCACACCCAGGACCCGCTGCAGGGAG------------------------CCC-CGGTGCCTTGG-------------------------CCCCGGTGCAGCCCTGATGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      159167  84 +    698298 GGGCACAGCAGACACACC-TCGGCCGCACATCCAGGACCCGCTGCAGGGAG------------------------CCC-CGGCGCCCTGG-------------------------CCCCGGTGCAGCCCTGATGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120585390  84 - 121039945 GGGTACAGCAGACACACC-TCGGTTGCACACCCAGGACCTGCTGCAGGGAG------------------------CCC-TGGTGCCCTGG-------------------------CCCTGGTGCAGCCCTGATGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179541156  84 - 180051392 GGGCACAGCAGACACACC-TCGGCCGCACACCCAGGACCCGCTGCAGGGAG------------------------CCC-CGGTGTCCAGG-------------------------CCCTGGTGCAGCCCTGATGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181274308  84 - 181584905 GGGCACAGCAGACACACC-TCGGCCGCACACCCAGGACCCGCTGCAGGGAG------------------------CCC-CGGTGTCCAGG-------------------------CCCTGGTGCAGCCCTGATGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      280725  84 -   1764207 GGGCACAGCAGACACACC-TCGGCCGCACACCCAGGACCCGCTGCAGGGAG------------------------CCC-CGGTGTCCAGG-------------------------CCCTGGTGCAGCCCTGATGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      285921  84 -  16742782 GGGCACAGCAGACACACC-TCGGCCGCACACCCAGGACCCGCTGCAGGGAG------------------------CCC-CAGTGCCCAGG-------------------------CCCTGGTGCAGCCCTGATGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90588114  84 -  91010382 GGGCACAGCAGACACACC-TCGGCCGCACACCCAGGACCCGCTGCAGGGAG------------------------CCC-CGGTGCCCAGG-------------------------CCCTGGTGCAGCCCTGATGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      183729  84 -    438239 GGGCACAGCAGACACACC-TCGGCCGCACACCCAGGACCCGCTGCAGGGAG------------------------CCC-CAGTGCCCAGG-------------------------CCCTGGTGCAGCCCTGATGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      213346  84 -    514179 GGGCACAGCACACACACC-TCGGCCACACACCCAGGACCTGCTGCAGGGAG------------------------CCC-CGGTGCCCAGG-------------------------TCCTGGTGCAGCCCTGATGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203872775  56 + 204313951 GGGTA---------------------------CAGGACCCGCGGCAGGGAG------------------------CTG-CATGGCCCAGG--------------------------CCTGAGGCAGCCCCGATG-
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16026964 106 +  16417988 GGGTA---------------------------CAGGACCTGCAGCAGAGAGACTGAGGCAGCCCCGATGCTGCCCCCG-CCCCACCCGAGGCAGCCCCGATGCTGCCCCCACCCCACCCGAGGCAGCCCCGATG-
i saiBol1.JH378155         I 1 C 0
s otoGar3.GL873745           1894969  81 -   2165740 GAGCACAGGGGACACCCTGTCGGCTGCATGCCTGGGACCTGTAGC--GGAG------------------------CCCAAGGTGGCCAGG--------------------------CCTGGTGC--CCCTAATGT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25440533  57 -  25620257 I
e cebCap1.NW_016108158v1      112760 288 +    298490 I
e canFam3.chr34             11733349 984 +  42124431 I

a score=66709.000000
s hg38.chr5_KI270793v1_alt     88717 7 +    126136 CTGCACC
s panTro5.chr5             181352884 7 - 181907262 CTGCACC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183069376 7 - 183735486 CTGCACC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      159251 7 +    698298 CTGCACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120585474 7 - 121039945 CTGCACC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179541240 7 - 180051392 CTGCACC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181274392 7 - 181584905 CTGCACC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      280809 7 -   1764207 CTGCACC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      286005 7 -  16742782 CTGCACC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90588198 7 -  91010382 CTGCACC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      183813 7 -    438239 CTGCACC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      213430 7 -    514179 CTGCACC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203872831 7 + 204313951 CTGCCCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16027070 7 +  16417988 CTGCCCC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25440590 7 -  25620257 CTGCCCC
i aotNan1.NW_018503740v1   I 57 C 0
s otoGar3.GL873745           1895050 7 -   2165740 CTGCATT
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      112760 288 +    298490 I
e canFam3.chr34             11733349 984 +  42124431 I

a score=1161642.000000
s hg38.chr5_KI270793v1_alt     88724 169 +    126136 CACCCCATTTGAGGAGGAGCTTTGGGA-CCGGGCTTTGGCTGCCGCCTCAGTGACAGCTCTGCCGGGGGTCACGTTACTGTCGCCGTTTTCTATTGATGTTTGGCGCAGAGTCCAGCTGTGGGGGGCTCATGCGCACAGCAACCTCAGGGCCAGCACCCCCGACATGGCA
s panTro5.chr5             181352891 169 - 181907262 CACCCCATTTGAGGAGGAGCTTTGGGA-CCGGGCTTTGGCTGCCGCCTCAGTGACAGCTCTGCCGGGGGTCACGTTACTGTCGCCGTTTTCTATTGATGTTTGGCGCAGAGTCCAGCTGTGGGGGGCTCGTGCACACAGCAACCTCAGGGCCAGCACCCCCGACATGGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183069383 169 - 183735486 CACCCCATTTGAGGAGGAGCTTTGGGA-CCGGGCTTTGGCTGCCGCCTCAGTGACAGCTCTGCCGGGGGTCACGTTACTGTCGCCGTTTTCTATTGATGTTTGGCGCAGAGTCCAGCTGTGGGGGGCTCGTGCACACAGCAACCTCAGGGCCAGCACCCCCGACATGGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      159258 169 +    698298 CACCCCATTTGAGGAGGAGCTTTGGGA-GCGGGCTTTGGCTGCCGCCTCAGTGACAGCTCTGCCGGGGGTCACGTTACTGTCGCCGTTTTCTATTGATGTTTGGCGCAGAGTCCAGCTGTGGGGGGCTCGTCCACACGGCAACCGCAGGGCCAGCACCCCCGACATGGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120585481 169 - 121039945 CACCCCGTTTGAGGAGGAGCTCTGCGA-CGGGGCTTTGGCTGCCGCTTCAGTGACAGCTCTGCCGGGGGTGACGTTACCGTCGCCGTTTTCTGTTGATGTTTGGCGCAGACTCCAGCCATGGGGGGCTTGTCCACACAGCAATCTCAGGGCCAGCACCCCCGACATGGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179541247 142 - 180051392 CACCCCATTTGGGAAG--------------GGGCTTTGGTGGCCACTTCAGTGACAGCTCTGCCGGGGATCACATTA-------------CTATTGATGTTTTGTGCAGACTCCGGCCATGGGGGGCTCATCCACACAGCGACCTCAAGGACAGCA-CCCCGACATGGTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181274399 142 - 181584905 CACCCCATTTGGGAAG--------------GGGCTTTGGTGGCCACTTCAGTGACAGCTCTGCCGGGGATCACATTA-------------CTATTGATGTTTTGTGCAGACTCCGGCCATGGGGGGCTCATCCACACAGCGACCTCAAGGACAGCA-CCCCGACATGGTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      280816 142 -   1764207 CACCCCATTTGGGAAG--------------GGGCTTTGGTGGCCACTTCAGTGACAGCTCTGCCGGGGATCACATTA-------------CTATTGATGTTTTGTGCAGACTCCAGCCATGGGGGGCTCATCCACACAGCGACCTCAAGGACAGCA-CCCCGACATGGTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      286012 142 -  16742782 CACCCCATTTGGGAAG--------------GGGCTTTGGTGGCCACTTCAGTGACAGCTCTGCCGGGGATCACATTA-------------CTATTGATGTTTTGTGCAGACTCCAGCCATGGGGGGCTCATCCACACAGCGACCTCAAGGACAGCA-CCCCGACATGGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90588205 142 -  91010382 CACCCCATTTGGGAAG--------------GGGCTTTGGTGGCCGCTTCAGTGACAGCTCTGCTGGGGATCACATTA-------------CTATTGATGTTTTGTGCAGACTCCAGCCATGGGGGGCTCGTCCACACAGCGACGTCAAGGCCAGCA-CCCCGACATGGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      183820 142 -    438239 CACCCCATTTGGGAAG--------------GGGCTTTGGTGGCCGCTTCAGTGACAGCTCTGCCGGGGATCACATTA-------------CTATTGATGTTTTGTGCAGACTCCAGCCATGGGGGGCTCATCCACACAGCGACCTCAAGGACAGCA-CCCCGACATGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      213437 142 -    514179 CACCCCATTTGGGAAG--------------GGGCTTTGGTGGCCCCTTCAGTGACAGCTCTGCCAGGGATCCCATTA-------------CTATTGATGTTTTGTGCAGACTCCAGCCATGGGGGGCTCGTCCACACAGCGACCTCAAGGCCAGCA-CCCCGACATGGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203872838 151 + 204313951 CACCCAGTTCGAGGAGGAGCTTTGGGA-CGGGGCTTTGGCC-CTGCTTCAGGGACAGCTCTGCTGGGGGTCA---------------TTTCTGTTG-ATTCCGGCACAGACTCCAGCC-TGGGTGGCTCGTCCACACAGCGACCTGGAGGCCAGCACCCCCGACACGGCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16027077 169 +  16417988 CACCTGATTCGAGGAGGAGCTTTGGGACCGGGGCTTTGGCC-CTGCTTCAGAGACAGCTCTGCTGGAGGTCATGTTACTATCGCCGTTTTCTACTGAAGTCCAGCATAGACTCCAGCCGTGAGTGGCTCGTCCACACGGCGACCTGGAGGCCTGCACCCCCAACATGGCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      113048 166 +    298490 CACCCAATTCGAGGAGGAGCTTTGGGA--GGGGCCTTGGCC-CTGCTTCAGGGACATCTCTGCTGGGGGTCATGTTGCTATCGCTGTTTTCTATTGATGTCCAGCATAGA-TTCAGCCGTGGGTGGCTCGTCCACACAGCGACCTGGAGGCCAGCACCCCCGACGTGGCA
i cebCap1.NW_016108158v1   I 288 C 0
s aotNan1.NW_018503740v1    25440597 168 -  25620257 CACCCGATTCGAGGAGGAGCTTTGGGA-CGGCGCTTTGGCC-CTGCTTCAGGGACAGCTCTGCTGGGGGTCATGTTACCATTGCCGTTTTCTACTGATGTCCGGCCTAGACTCCAGCCGTGGGTGGCTCGTCCACACAGCGACCTGGAGGCCAGCACCCCCGACGTGGCG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1895057 149 -   2165740 TGGCCGGTTCAAGCAGAGCCTTTGGGA-CGGTGC-TTGGCC-CATGTTTACAGAAAG---TGCTGTGGGCTACATTACTATCAACACTTTGGATTGGTGGCTCCCATAGACTTCAGCGGAGCAGGTCTAGTCCACAAGGCAT---------------CCACAGCTTTGTC
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11733349 984 +  42124431 I

a score=4939299.000000
s hg38.chr5_KI270793v1_alt     88893 572 +    126136  
s panTro5.chr5             181353060 571 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183069552 571 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      159427 572 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120585650 572 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179541389 552 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181274541 555 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      280958 555 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      286154 555 -  16742782  
i cerAty1.NW_012009470v1   C 0 I 226
s chlSab2.chr4              90588347 572 -  91010382  
i chlSab2.chr4             C 0 I 200
s manLeu1.NW_012110441v1      183962 545 -    438239  
i manLeu1.NW_012110441v1   C 0 I 203
s colAng1.NW_012118799v1      213579 565 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203872989 535 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16027246 518 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      113214 533 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25440765 517 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1895206 577 -   2165740  
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11734333 628 +  42124431  
i canFam3.chr34            I 984 C 0

a score=12403.000000
s hg38.chr5_KI270793v1_alt     89465 2 +    126136 ca
s panTro5.chr5             181353631 2 - 181907262 ca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070123 2 - 183735486 ca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      159999 2 +    698298 ca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120586222 2 - 121039945 CC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179541941 2 - 180051392 ca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181275096 2 - 181584905 ca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      281513 2 -   1764207 ca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      286935 2 -  16742782 ca
i cerAty1.NW_012009470v1   I 226 C 0
s chlSab2.chr4              90589119 2 -  91010382 CA
i chlSab2.chr4             I 200 C 0
s manLeu1.NW_012110441v1      184710 2 -    438239 ca
i manLeu1.NW_012110441v1   I 203 C 0
s colAng1.NW_012118799v1      214144 2 -    514179 ca
i colAng1.NW_012118799v1   C 0 I 290
s saiBol1.JH378155          16027764 2 +  16417988 TG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      113747 2 +    298490 TG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25441282 2 -  25620257 TG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1895783 2 -   2165740 CA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11734961 2 +  42124431 CA
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203873524 0 + 204313951 C

a score=22958.000000
s hg38.chr5_KI270793v1_alt     89467 3 +    126136 cat
s panTro5.chr5             181353633 3 - 181907262 cat
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070125 3 - 183735486 cat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160001 3 +    698298 cat
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120586224 3 - 121039945 CAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179541943 3 - 180051392 cat
i rheMac8.chr6             C 0 I 232
s macFas5.chr6             181275098 3 - 181584905 cat
i macFas5.chr6             C 0 I 228
s macNem1.NW_012012389v1      281515 3 -   1764207 cat
i macNem1.NW_012012389v1   C 0 I 230
s cerAty1.NW_012009470v1      286937 3 -  16742782 cat
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90589121 3 -  91010382 CAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      184712 3 -    438239 cat
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      214436 3 -    514179 cat
i colAng1.NW_012118799v1   I 290 C 0
s saiBol1.JH378155          16027766 3 +  16417988 CAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      113749 3 +    298490 CGT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25441284 3 -  25620257 CAC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1895785 3 -   2165740 CAT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11734963 2 +  42124431 CG-
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203873524 0 + 204313951 C

a score=510915.000000
s hg38.chr5_KI270793v1_alt     89470 75 +    126136 gcacacacacgcacacaTGCCACCACGCTTTATTTCAATCACCTGGTCCC-A---CCGAGGACACCTCGTCGTGCGTGT--
s panTro5.chr5             181353636 75 - 181907262 gcacacacacgcacacaTGCCAACACGCTTTATTTCAATCACCTGGTCCC-A---CCGAGGACACCTCGTCGTGCGTGT--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070128 75 - 183735486 gcacacacacgcacacaTGCCAACACGCTTTATTTCAATCACCTGGTCCC-A---CCGAGGACACCTTGTCGTGCGTGT--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160004 75 +    698298 gcacacacacgcacacaTGCCAACACGCTTTATTTCAATCACCTGGTCCC-A---CCGAGGACACCTCGTCATGCGTGT--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120586227 65 - 121039945 ----------GCACACATGCCAACACGCTTTATTTCAATCACCTGGTCCC-A---CTGAGGACACCTTGTCGTGCATGT--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179542178 62 - 180051392 GCACACGCATGCACACATGCCAACATGCTTTATTTCAATCACCTGGTCCC-A---CCGAGGACACC---------------
i rheMac8.chr6             I 232 C 0
s macFas5.chr6             181275329 62 - 181584905 gcacacgcatgcacacatgcCAACATGCTTTATTTCAATCACCTGGTCCC-A---CCGAGGACACC---------------
i macFas5.chr6             I 228 C 0
s macNem1.NW_012012389v1      281748 62 -   1764207 gcacacgcatgcacacatgcCAACATGCTTTATTTCAATCACCTGGTCCC-A---CTGAGGACACC---------------
i macNem1.NW_012012389v1   I 230 C 0
s cerAty1.NW_012009470v1      286940 62 -  16742782 gcacacgcctgcacaCATGCCAACACGCTTTATTTCAATCACCTGGTCCC-A---CCGAGGACACC---------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90589124 62 -  91010382 GCACACACATGTACACATGCCAACACGCTTTATTTCAATCACCTGGTCCC-A---CCGAGGACACC---------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      184715 62 -    438239 gcacacgcctgcacacaTGCCAACACGCTTTATTTCAATCACCTGGTCCC-A---CCGAGGACACC---------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      214439 75 -    514179 gcacacacatgcacacaTGCCAACACGCTTTATTTCAATCACCTGGGCCC-A---CCGAGGACACCTTGTCCTGCGTGT--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203873524 59 + 204313951 ----------------ACACCAACCAGCTGTATTTCAATCACCTGGTCCCTT---CCGAGAACACCTCGTCATGCGTG---
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16027769 71 +  16417988 ----GCACGCACACATACACCAGCAAGCTCTATTTCAATCACCTGGTCCCTA---CTGAGGACACCTCGTCATGCGTG---
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      113752 72 +    298490 ----GTACACACACATACACCAACAAGCTTTATTTCAATCACCTGGTCCTGA---CCGAAGACACCTCATCGTGTGTGT--
i cebCap1.NW_016108158v1   C 0 I 29
s aotNan1.NW_018503740v1    25441287 71 -  25620257 ----GCACACACACGTACACCAACGAGCTTTATTTCAATCACCTGGTCCCTA---CCGAGGTCACCTCATCATGCGGG---
i aotNan1.NW_018503740v1   C 0 I 7
s otoGar3.GL873745           1895788 60 -   2165740 ----------GCA-----GCCACCTAGCTGTGTTTCAAACATCTTGTCCT-T---TCAATGACAGTTTGCCACGAAAGT--
i otoGar3.GL873745         C 0 I 5
s canFam3.chr34             11734965 59 +  42124431 ---------------------CACCAGCTTTGTTCCCAATATCCAGTCAC-AGTTGCGAGGACAGCTTTCCAGACAAATGT
i canFam3.chr34            C 0 C 0

a score=-3646.000000
s hg38.chr5_KI270793v1_alt     89545 6 +    126136 AGTTGG
s panTro5.chr5             181353711 6 - 181907262 AGTTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070203 6 - 183735486 AGTTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160079 6 +    698298 AGTTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120586292 6 - 121039945 AGCTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179542240 1 - 180051392 -----T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181275391 1 - 181584905 -----T
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      281810 1 -   1764207 -----T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287002 1 -  16742782 -----T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90589186 1 -  91010382 -----T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      184777 1 -    438239 -----T
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      214514 6 -    514179 AGCTGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203873583 3 + 204313951 ---TGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16027840 3 +  16417988 ---TGG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25441365 6 -  25620257 AGGTGG
i aotNan1.NW_018503740v1   I 7 I 17
s otoGar3.GL873745           1895853 6 -   2165740 AGCTGA
i otoGar3.GL873745         I 5 I 4
s canFam3.chr34             11735024 6 +  42124431 GCTTGG
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      113824 29 +    298490 I

a score=16576.000000
s hg38.chr5_KI270793v1_alt     89551 2 +    126136 -GA
s panTro5.chr5             181353717 2 - 181907262 -GA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070209 2 - 183735486 -GA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160085 2 +    698298 -GA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120586298 2 - 121039945 -GA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179542241 2 - 180051392 -GA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181275392 2 - 181584905 -GA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      281811 2 -   1764207 -GA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287003 2 -  16742782 -GA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90589187 2 -  91010382 -GA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      184778 2 -    438239 -GA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      214520 2 -    514179 -GA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203873586 2 + 204313951 -GA
i calJac3.chr2             C 0 I 44
s saiBol1.JH378155          16027843 2 +  16417988 -GA
i saiBol1.JH378155         C 0 I 27
s cebCap1.NW_016108158v1      113853 2 +    298490 -GA
i cebCap1.NW_016108158v1   I 29 C 0
s aotNan1.NW_018503740v1    25441388 2 -  25620257 -GA
i aotNan1.NW_018503740v1   I 17 C 0
s otoGar3.GL873745           1895863 2 -   2165740 -GC
i otoGar3.GL873745         I 4 C 0
s canFam3.chr34             11735030 2 +  42124431 TG-
i canFam3.chr34            C 0 C 0

a score=370480.000000
s hg38.chr5_KI270793v1_alt     89553 43 +    126136 --CTCCTCGCCTGTT--GCCTGTGTCTCCTGAGCTCCAGGCTGGCT-G
s panTro5.chr5             181353719 43 - 181907262 --CTCCTGGCCTGTT--GCCTGTGTCTCCTGAGCTCCAGGCTGGCT-G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070211 43 - 183735486 --CTCCTGGCCTGTT--GCCTGTGTCTCCTGAGCTCCAGGCTGGCT-G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160087 43 +    698298 --CTCCTGGCCTATT--GCCTGTGTCTCCTGAGCTCCAGGCTGGCT-G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120586300 43 - 121039945 --CTCTCGGCCTGTT--GCCTGTGTCTCCTGAGCTCCAGGCTGGCT-G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179542243 43 - 180051392 --CTCCCGGCCTGTC--GTCTGTGTCTCCTGAGCTCCAGGCTGGCT-G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181275394 43 - 181584905 --CTCCCGGCCTGTC--GTCTGTGTCTCCTGAGCTCCAGGCTGGCT-G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      281813 43 -   1764207 --CTCCCAGCCTGTC--GTCTGTGTCTCCTGAGCTCCAGGCTGGCT-G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287005 43 -  16742782 --CTCCCGGCCTGTC--GTCTGTGTCTCCTGAGCTCCAAGCTGGCT-G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90589189 43 -  91010382 --CTCCCGGCCTGTC--CTCTGTGTCTCCTGAGCTCCAGGCTGGCT-G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      184780 43 -    438239 --CTCCCGGCCTGTC--GTCTGTGTCTCCTGAGCTCCAAGCTGGCT-G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      214522 43 -    514179 --CTCCTGGCCTGTC--GTCTGTGTCTCCTGAGCTCCAGGCTGGCT-G
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16027872 41 +  16417988 --CTCCCAGCCT-TC--GCCTGTGTCTCCTGAGCTCCAGGCTAGCT--
i saiBol1.JH378155         I 27 C 0
s cebCap1.NW_016108158v1      113855 41 +    298490 --CTCCCAGCCT-TC--TCCTGTGTCTCCTGAGCTCCAGGCTAGCT--
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25441390 42 -  25620257 --CTCCCAGCCT-TC--GCCTGTGTCTCTGGAGCTCCAGGCTAGCTG-
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1895865 45 -   2165740 --TCCCTGCCCTGGCCAGTCTGTGTTTCCTGAACTTAGAGGTGGCT-G
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735032 40 +  42124431 AGCCCCGACCCTGCC--TGCCCTGTGTTCGGAGCTC-----TGGCA-G
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203873588 44 + 204313951 I

a score=6214910.000000
s hg38.chr5_KI270793v1_alt     89596 700 +    126136  
s panTro5.chr5             181353762 700 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070254 700 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160130 700 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120586343 691 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179542286 700 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181275437 700 - 181584905  
i macFas5.chr6             C 0 I 307
s macNem1.NW_012012389v1      281856 700 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287048 700 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90589232 699 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      184823 700 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      214565 696 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203873632 705 + 204313951  
i calJac3.chr2             I 44 C 0
s saiBol1.JH378155          16027913 689 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      113896 679 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25441432 611 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1895910 432 -   2165740  
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735072 605 +  42124431  
i canFam3.chr34            C 0 C 0

a score=125784.000000
s hg38.chr5_KI270793v1_alt     90296 12 +    126136 AATCAGTGAACT
s panTro5.chr5             181354462 12 - 181907262 AATCAGTGAACT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070954 12 - 183735486 AATCAGTGAACT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160830 12 +    698298 AATCAGTGAACT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587034 12 - 121039945 AATCGGTGAACT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179542986 12 - 180051392 AATCAGTGAACT
i rheMac8.chr6             C 0 I 319
s macFas5.chr6             181276444 12 - 181584905 aaTCAGTGAACT
i macFas5.chr6             I 307 C 0
s macNem1.NW_012012389v1      282556 12 -   1764207 AATCAGTGAACT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287748 12 -  16742782 AATCAGTGAACT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90589931 12 -  91010382 AATCAGTGAACT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185523 12 -    438239 AATCAGTGAACT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215261 12 -    514179 AATCAGTGAACT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874337 12 + 204313951 AATCGGTGAACT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028602 12 +  16417988 AATTAGTGAACT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      114575 12 +    298490 AATTAGTGAACT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25442043 12 -  25620257 AATTAGTGAACT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1896342  3 -   2165740 ---------CCT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735677 12 +  42124431 AACGAGCAGGCC
i canFam3.chr34            C 0 C 0

a score=37559.000000
s hg38.chr5_KI270793v1_alt     90308 11 +    126136 GATGGAACGTC
s panTro5.chr5             181354474 11 - 181907262 GATGGAACGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070966 11 - 183735486 GATGGAACGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160842 11 +    698298 GATGGACCGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587046 11 - 121039945 GATGGACCATC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181276456 11 - 181584905 AATACACTGTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282568 11 -   1764207 AATACACTGTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287760 11 -  16742782 AATGCACTATT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90589943 11 -  91010382 AATACACTGTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185535 11 -    438239 AATGCACTATT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215273 11 -    514179 AATACACTGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874349 11 + 204313951 CAGGCACTGTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028614 11 +  16417988 CAGGCACTGTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      114587 11 +    298490 CAGGCACTGTT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25442055 11 -  25620257 CAGGCACTGTT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1896345  6 -   2165740 TCTGGA-----
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735689 11 +  42124431 AGTGTGCTGTT
i canFam3.chr34            C 0 C 0
e rheMac8.chr6             179542998 319 - 180051392 I

a score=96066.000000
s hg38.chr5_KI270793v1_alt     90319 11 +    126136 AGCATCCGTGA
s panTro5.chr5             181354485 11 - 181907262 AGCATCCGTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070977 11 - 183735486 AGCATCCGTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160853 11 +    698298 AGCATCCGTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587057 11 - 121039945 AGCATCCGTGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179543317 11 - 180051392 AGCATCCGTGA
i rheMac8.chr6             I 319 C 0
s macFas5.chr6             181276467 11 - 181584905 AGCATCCGTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282579 11 -   1764207 AGCATCCGTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287771 11 -  16742782 AGCATCCGTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90589954 11 -  91010382 AGCATCCATGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185546 11 -    438239 AGCATCCGTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215284 11 -    514179 AGCATCCGTGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874360 10 + 204313951 AGTGCCT-CGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028625 11 +  16417988 AGCATCTGCCG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      114598 11 +    298490 AGCATCCGCGA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25442066 11 -  25620257 AGCATACGTGA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11735700 10 +  42124431 AGC-TCCAAGA
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1896351  0 -   2165740 C

a score=71063.000000
s hg38.chr5_KI270793v1_alt     90330 11 +    126136 CCTTCTTCTCC
s panTro5.chr5             181354496 11 - 181907262 CCTTCTTCTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070988 11 - 183735486 CCTTCTTCTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160864 11 +    698298 CCTTCTTCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587068 11 - 121039945 CCTTCTTCTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179543328 11 - 180051392 CCTTATTCTCC
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181276478 11 - 181584905 CCTTATTCTCC
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      282590 11 -   1764207 CCTTATTCTCC
i macNem1.NW_012012389v1   C 0 I 1
s cerAty1.NW_012009470v1      287782 11 -  16742782 CCTTATTCTCC
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90589965 11 -  91010382 CCTTATTCTCC
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      185557 11 -    438239 CCTTATTCTCC
i manLeu1.NW_012110441v1   C 0 I 1
s calJac3.chr2             203874370 10 + 204313951 -CCTTTTCTTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028636 10 +  16417988 -CCTTTTCTTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      114609 10 +    298490 -CCTTTTCTCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25442077 10 -  25620257 -CCTTTTCCCC
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11735710  5 +  42124431 -----CGCTC-
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1896351  0 -   2165740 C
e colAng1.NW_012118799v1      215295  0 -    514179 C

a score=-23283.000000
s hg38.chr5_KI270793v1_alt     90341 4 +    126136 -TCT-C
s panTro5.chr5             181354507 4 - 181907262 -TCT-C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183070999 4 - 183735486 -TCT-C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160875 4 +    698298 -TCT-C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587079 4 - 121039945 -TCT-C
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203874380 4 + 204313951 -TTTA-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028646 4 +  16417988 -TTTA-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      114619 4 +    298490 -TTTA-
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25442087 4 -  25620257 -TTTA-
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1896351 1 -   2165740 --C---
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735715 3 +  42124431 CTT---
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1      185568 1 -    438239 I
e chlSab2.chr4              90589976 1 -  91010382 I
e cerAty1.NW_012009470v1      287793 1 -  16742782 I
e colAng1.NW_012118799v1      215295 0 -    514179 C
e macNem1.NW_012012389v1      282601 1 -   1764207 I
e macFas5.chr6             181276489 1 - 181584905 I
e rheMac8.chr6             179543339 1 - 180051392 I

a score=63922.000000
s hg38.chr5_KI270793v1_alt     90345 19 +    126136 -----AAATCACCAGCCTTCCACG
s panTro5.chr5             181354511 19 - 181907262 -----AAATCACCAGCCTTCCACG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071003 19 - 183735486 -----AAATCACCAGCCTTCCACG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160879 19 +    698298 -----AAATCACCAGCCTTCCACG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587083 19 - 121039945 -----AAATCACCAGCCTCCCACA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181276490 19 - 181584905 -----AAATCACCAGCCTCCCACT
i macFas5.chr6             I 1 C 0
s chlSab2.chr4              90589977 19 -  91010382 -----AAATCACCAGCCTCCCACT
i chlSab2.chr4             I 1 C 0
s manLeu1.NW_012110441v1      185569 19 -    438239 -----AAATCACCAGCCTCCCACT
i manLeu1.NW_012110441v1   I 1 C 0
s calJac3.chr2             203874384 19 + 204313951 -----AAATCACCAGTCTCCCGCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028650  5 +  16417988 -----AAATT--------------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      114623 19 +    298490 -----AAATCACCAGCTGCCCGCT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25442091 19 -  25620257 -----AAATCACCAGCCGCCCGCT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1896352  9 -   2165740 -----AGATCACTG----------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735718 10 +  42124431 GAAACAAAGC--------------
i canFam3.chr34            C 0 C 0
e cerAty1.NW_012009470v1      287793  1 -  16742782 I
e colAng1.NW_012118799v1      215295  0 -    514179 C
e macNem1.NW_012012389v1      282601  1 -   1764207 I
e rheMac8.chr6             179543339  1 - 180051392 I

a score=98455.000000
s hg38.chr5_KI270793v1_alt     90364 33 +    126136 GGCCCACCAACCAACCCTGAGCTCGTGGGCTAG
s panTro5.chr5             181354530 33 - 181907262 GGCCCACCAACCAACCCTGAGCTCGTGGGCTGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160898 32 +    698298 GGCCCACCAACCAACCCTGAGCTCGTGGGCTG-
i gorGor5.CYUI01015805v1   C 0 T 66
s nomLeu3.chr6             120587102 33 - 121039945 GGCCCACCAACCAACCCTGAACGCGTGGGCTGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181276509 33 - 181584905 GGCCCACCAACCAACCCCGAGCTCGCGGGCTGA
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90589996 33 -  91010382 GGCCCACCAACCAACCCCGAGCTCGTGGGCTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185588 33 -    438239 GGCCCACCAACCAACCCCGAGCTCGTAGGCTGA
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203874403 32 + 204313951 GGCCCAGCAACCAG-CCTGAGCCCTTGGGGTGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028655 23 +  16417988 ---------GCCAA-CCTGAGCCCGTGGGGTGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      114642 32 +    298490 GGCCCAGCAGCCAA-CCTGAGCCCGTGGGGTGA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25442110 32 -  25620257 GGCCCATCAACCAA-CCCGAGCCCGTGGGGTGA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1896361 11 -   2165740 GGCCCATCCAT----------------------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735728 13 +  42124431 -------------------AGCTCCTTGGCTG-
i canFam3.chr34            C 0 C 0
e cerAty1.NW_012009470v1      287793  1 -  16742782 I
e colAng1.NW_012118799v1      215295  0 -    514179 C
e macNem1.NW_012012389v1      282601  1 -   1764207 I
e rheMac8.chr6             179543339  1 - 180051392 I
e panPan2.chr5             183071022  0 - 183735486 C

a score=66829.000000
s hg38.chr5_KI270793v1_alt     90397 20 +    126136 GTGGATTCCTTCTGGCTCAG
s panTro5.chr5             181354563 20 - 181907262 GTGGATTCCTTCTGGCTCAG
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120587135 20 - 121039945 GTGGATTCCTTCTGGCTCAG
i nomLeu3.chr6             C 0 T 87
s macFas5.chr6             181276542 20 - 181584905 GCGGATTCCTTCCGGTTCAG
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90590029 20 -  91010382 GCGGATTCCTTCTGGCTCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185621 20 -    438239 GTGGATTCCTTCCGGCTCAG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203874435 20 + 204313951 GTGTGTTTCTTCGGGCTCAA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028678 20 +  16417988 GTGTGTTTCTTCTAGCTCAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      114674 20 +    298490 GTGTGTTTCTTCTGGCTCAA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25442142 20 -  25620257 GTGTGTTTCTTCTGGCTCAA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11735741 13 +  42124431 -------CCCACTGGCCTAG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1896372  0 -   2165740 C
e cerAty1.NW_012009470v1      287793  1 -  16742782 I
e colAng1.NW_012118799v1      215295  0 -    514179 C
e macNem1.NW_012012389v1      282601  1 -   1764207 I
e rheMac8.chr6             179543339  1 - 180051392 I
e gorGor5.CYUI01015805v1      160930 66 +    698298 T
e panPan2.chr5             183071022  0 - 183735486 C

a score=41958.000000
s hg38.chr5_KI270793v1_alt     90417 18 +    126136 CTCTGTGTTGACCTCACG
s panTro5.chr5             181354583 18 - 181907262 CTCTGTGTTGACCTCACG
i panTro5.chr5             C 0 C 0
s macFas5.chr6             181276562 18 - 181584905 CTCTGTGCTGGCCCCACG
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90590049 18 -  91010382 CTCTGTGCTGACCCCATG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185641 18 -    438239 CTCTGTGCTGGCCCCACG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203874455 18 + 204313951 TTCTGTCTTGACCCCATG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028698 18 +  16417988 TTCTGTGTTGACCCCACA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      114694 18 +    298490 TTCTGTGTTGACCCCACA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25442162 17 -  25620257 -TCTGTGTTGACCCCACG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1896372 10 -   2165740 -----TGTTGCCACC---
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735754  8 +  42124431 CTCTAGGT----------
i canFam3.chr34            C 0 C 0
e nomLeu3.chr6             120587155 87 - 121039945 T
e cerAty1.NW_012009470v1      287793  1 -  16742782 I
e colAng1.NW_012118799v1      215295  0 -    514179 C
e macNem1.NW_012012389v1      282601  1 -   1764207 I
e rheMac8.chr6             179543339  1 - 180051392 I
e gorGor5.CYUI01015805v1      160930 66 +    698298 T
e panPan2.chr5             183071022  0 - 183735486 C

a score=19206.000000
s hg38.chr5_KI270793v1_alt     90435 3 +    126136 CCT
s panTro5.chr5             181354601 3 - 181907262 CCT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160864 3 +    698298 CCT
i gorGor5.CYUI01015805v1   T 66 C 0
s nomLeu3.chr6             120587068 3 - 121039945 CCT
i nomLeu3.chr6             T 87 C 0
s macFas5.chr6             181276580 3 - 181584905 CCT
i macFas5.chr6             C 0 T 93
s chlSab2.chr4              90590067 3 -  91010382 CCT
i chlSab2.chr4             C 0 T 93
s manLeu1.NW_012110441v1      185659 3 -    438239 CCT
i manLeu1.NW_012110441v1   C 0 T 93
s colAng1.NW_012118799v1      215295 3 -    514179 CCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874473 3 + 204313951 CCT
i calJac3.chr2             C 0 T 103
s saiBol1.JH378155          16028716 3 +  16417988 CCT
i saiBol1.JH378155         C 0 T 79
s cebCap1.NW_016108158v1      114712 3 +    298490 CCT
i cebCap1.NW_016108158v1   C 0 I 122
s aotNan1.NW_018503740v1    25442179 3 -  25620257 CCT
i aotNan1.NW_018503740v1   C 0 I 34
e otoGar3.GL873745           1896382 0 -   2165740 C
e canFam3.chr34             11735762 0 +  42124431 C
e cerAty1.NW_012009470v1      287793 1 -  16742782 I
e macNem1.NW_012012389v1      282601 1 -   1764207 I
e rheMac8.chr6             179543339 1 - 180051392 I
e panPan2.chr5             183071022 0 - 183735486 C

a score=-1661.000000
s hg38.chr5_KI270793v1_alt     90438 2 +    126136 TA
s panTro5.chr5             181354604 2 - 181907262 TA
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160867 2 +    698298 TC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587071 2 - 121039945 TC
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      215298 2 -    514179 TA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874373 1 + 204313951 T-
i calJac3.chr2             T 103 C 0
s otoGar3.GL873745           1896382 1 -   2165740 -A
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I
e saiBol1.JH378155          16028719 79 +  16417988 T
e canFam3.chr34             11735762 0 +  42124431 C
e manLeu1.NW_012110441v1      185662 93 -    438239 T
e chlSab2.chr4              90590070 93 -  91010382 T
e cerAty1.NW_012009470v1      287793 1 -  16742782 I
e macNem1.NW_012012389v1      282601 1 -   1764207 I
e macFas5.chr6             181276583 93 - 181584905 T
e rheMac8.chr6             179543339 1 - 180051392 I
e panPan2.chr5             183071022 0 - 183735486 C

a score=13144.000000
s hg38.chr5_KI270793v1_alt     90440 10 +    126136 TTCTCCTCTC
s panTro5.chr5             181354606 10 - 181907262 TTCTCCTCTC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160869 10 +    698298 TTCTCCTCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587073 10 - 121039945 TTCTCCTCTC
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      215300 10 -    514179 TTCTCCTCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874374 10 + 204313951 TTCTTCTTTA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028640 10 +  16417988 TTCTTCTTTA
i saiBol1.JH378155         T 79 C 0
s otoGar3.GL873745           1896383 10 -   2165740 TAGTGTTTTG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I
e canFam3.chr34             11735762  0 +  42124431 C
e manLeu1.NW_012110441v1      185662 93 -    438239 T
e chlSab2.chr4              90590070 93 -  91010382 T
e cerAty1.NW_012009470v1      287793  1 -  16742782 I
e macNem1.NW_012012389v1      282601  1 -   1764207 I
e macFas5.chr6             181276583 93 - 181584905 T
e rheMac8.chr6             179543339  1 - 180051392 I
e panPan2.chr5             183071022  0 - 183735486 C

a score=101122.000000
s hg38.chr5_KI270793v1_alt     90450 19 +    126136 AAATCACCAGCCTCCCACT
s panTro5.chr5             181354616 19 - 181907262 AAATCACCAGCCTCCCACT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160879 19 +    698298 AAATCACCAGCCTTCCACG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587083 19 - 121039945 AAATCACCAGCCTCCCACA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179543340 19 - 180051392 AAATCACCAGCCTCCCACT
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181276490 19 - 181584905 AAATCACCAGCCTCCCACT
i macFas5.chr6             T 93 C 0
s macNem1.NW_012012389v1      282602 19 -   1764207 AAATCACCAGCCTCCCAAT
i macNem1.NW_012012389v1   I 1 C 0
s cerAty1.NW_012009470v1      287794 19 -  16742782 AAATCACCAGCCTCCCACT
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90589977 19 -  91010382 AAATCACCAGCCTCCCACT
i chlSab2.chr4             T 93 C 0
s manLeu1.NW_012110441v1      185569 19 -    438239 AAATCACCAGCCTCCCACT
i manLeu1.NW_012110441v1   T 93 C 0
s colAng1.NW_012118799v1      215310 19 -    514179 AAATCACCAGCCTCCCACT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874384 19 + 204313951 AAATCACCAGTCTCCCGCT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028650  5 +  16417988 AAATT--------------
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1896393 11 -   2165740 AAATAACCCAC--------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I
e canFam3.chr34             11735762  0 +  42124431 C
e panPan2.chr5             183071022  0 - 183735486 C

a score=216712.000000
s hg38.chr5_KI270793v1_alt     90469 32 +    126136 GGCCCACCAACCAACCCTGAGCTCGTGGGCTG
s panTro5.chr5             181354635 32 - 181907262 GGCCCACCAAGCAACCCTGAGCTCGTGGTCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071022 32 - 183735486 GGCCCACCAAGCAACCCTGAGCTCGTGGGCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160898 32 +    698298 GGCCCACCAACCAACCCTGAGCTCGTGGGCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587102 32 - 121039945 GGCCCACCAACCAACCCTGAACGCGTGGGCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179543359 32 - 180051392 GGCCCACCAACCAACCCCGAGCTCGCGGGCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276509 32 - 181584905 GGCCCACCAACCAACCCCGAGCTCGCGGGCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282621 32 -   1764207 GGCCCACCAACCAACCCCGAGCTCGCGGGCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287813 32 -  16742782 GGCCCACCAACCAACCCCGAGCTCATAGGCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90589996 32 -  91010382 GGCCCACCAACCAACCCCGAGCTCGTGGGCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185588 32 -    438239 GGCCCACCAACCAACCCCGAGCTCGTAGGCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215329 32 -    514179 GGCCCACCAACCAACCCTGAGCTCATGGGCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874403 31 + 204313951 GGCCCAGCAACCAG-CCTGAGCCCTTGGGGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028655 22 +  16417988 ---------GCCAA-CCTGAGCCCGTGGGGTG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1896404 32 -   2165740 AGCCCAGCAACCCACCCAGAGCTCAGTGGGTA
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11735762  4 +  42124431 ----------------------------GATG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I

a score=6695.000000
s hg38.chr5_KI270793v1_alt     90501 1 +    126136 A
s panTro5.chr5             181354667 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071054 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120587134 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179543391 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276541 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282653 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287845 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590028 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185620 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215361 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874434 1 + 204313951 A
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028677 1 +  16417988 A
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11735766 1 +  42124431 G
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e otoGar3.GL873745           1896436 1 -   2165740 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I
e gorGor5.CYUI01015805v1      160930 0 +    698298 C

a score=111142.000000
s hg38.chr5_KI270793v1_alt     90502 14 +    126136 GTGGATTCCTTCTG
s panTro5.chr5             181354668 14 - 181907262 GTGGATTCCTTCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071055 14 - 183735486 GTGGATTCCTTCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160930 14 +    698298 GTGGATTCCTTCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587135 14 - 121039945 GTGGATTCCTTCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179543392 14 - 180051392 GCGGATTCCTTCCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276542 14 - 181584905 GCGGATTCCTTCCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282654 14 -   1764207 GCGGATTCCTTCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287846 14 -  16742782 GTGGATTCCTTCCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590029 14 -  91010382 GCGGATTCCTTCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185621 14 -    438239 GTGGATTCCTTCCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215362 14 -    514179 GTGGATTCCTTCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874435 14 + 204313951 GTGTGTTTCTTCGG
i calJac3.chr2             C 0 I 27
s saiBol1.JH378155          16028678 14 +  16417988 GTGTGTTTCTTCTA
i saiBol1.JH378155         C 0 I 27
s otoGar3.GL873745           1896437 14 -   2165740 ACATATTCATTCTG
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11735767 14 +  42124431 GGATATTCATTCTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I

a score=33828.000000
s hg38.chr5_KI270793v1_alt     90516 6 +    126136 GCTCAG
s panTro5.chr5             181354682 6 - 181907262 GCTCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071069 6 - 183735486 GCTCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160944 6 +    698298 GCTCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587149 6 - 121039945 GCTCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179543406 6 - 180051392 GCTCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276556 6 - 181584905 GTTCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282668 6 -   1764207 GCTCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287860 6 -  16742782 GCTCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590043 6 -  91010382 GCTCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185635 6 -    438239 GCTCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215376 6 -    514179 GCTCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874476 1 + 204313951 -----G
i calJac3.chr2             I 27 C 0
s saiBol1.JH378155          16028719 1 +  16417988 -----G
i saiBol1.JH378155         I 27 C 0
s otoGar3.GL873745           1896451 5 -   2165740 GTTAA-
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735781 6 +  42124431 GCCAAG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I

a score=15482.000000
s hg38.chr5_KI270793v1_alt     90522 2 +    126136 CT
s panTro5.chr5             181354688 2 - 181907262 CT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071075 2 - 183735486 CT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160950 2 +    698298 CT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179543412 2 - 180051392 CT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276562 2 - 181584905 CT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282674 2 -   1764207 CT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287866 2 -  16742782 CT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590049 2 -  91010382 CT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185641 2 -    438239 CT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215382 2 -    514179 CC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874477 2 + 204313951 CT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028720 2 +  16417988 CT
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1896456 2 -   2165740 CA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735787 2 +  42124431 CT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I
e nomLeu3.chr6             120587155 0 - 121039945 C

a score=197491.000000
s hg38.chr5_KI270793v1_alt     90524 31 +    126136 C--------TGTGTTGACCTCACGCCTGGGCAGTGGCTC
s panTro5.chr5             181354690 31 - 181907262 C--------TGTGTTGACCTCACGCCTGGGCAGTGGCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071077 31 - 183735486 C--------TGTGTTGACCTCACGCCTGGGCAGTGGCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160952 31 +    698298 C--------TGTGTTGACCTCACGCCTGGGCAGTGGCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587155 31 - 121039945 C--------TGTGTTGACCCCACGCCTGGGCAGTGGCTC
i nomLeu3.chr6             C 0 I 1
s rheMac8.chr6             179543414 29 - 180051392 C--------TGTGT--GCCCCACGCCTGGGCAGCGGTTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276564 31 - 181584905 C--------TGTGCTGGCCCCACGCCTGGGCAGTGGTTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282676 31 -   1764207 C--------TGTGCTGGCCCCACGCCTGGGCAGCGGTTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287868 31 -  16742782 C--------TGTGCTGGCCCCACGCCTGGGCAGTGGTTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590051 31 -  91010382 C--------TGTGCTGACCCCATGCCTGGGCAGTGGTTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185643 31 -    438239 C--------TGTGCTGGCCCCACGCCTGGGCAGTGGTTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215384 39 -    514179 CACTGCCTGTGTGTTGACCCCACGCCTAGGCAGTGGTTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874479  9 + 204313951 ------------------------------CAGTGGCTC
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16028722  9 +  16417988 ------------------------------CAGTGGCTG
i saiBol1.JH378155         C 0 I 1
s otoGar3.GL873745           1896458 31 -   2165740 C--------TGTGTTGGCCTGAGGTCTGGGCAGTGGCTC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735789 31 +  42124431 C--------TGTTCTCCCCTCACACCTGGGCAGTGGCTT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I

a score=486.000000
s hg38.chr5_KI270793v1_alt     90555 1 +    126136 -A
s panTro5.chr5             181354721 1 - 181907262 -A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071108 1 - 183735486 -A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160983 1 +    698298 -A
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179543443 1 - 180051392 -A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276595 1 - 181584905 -A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282707 1 -   1764207 -A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287899 1 -  16742782 -A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590082 1 -  91010382 -A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185674 1 -    438239 -A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215423 1 -    514179 -A
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1896489 1 -   2165740 -A
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735820 1 +  42124431 C-
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I
e saiBol1.JH378155          16028731 1 +  16417988 I
e calJac3.chr2             203874488 1 + 204313951 I
e nomLeu3.chr6             120587186 1 - 121039945 I

a score=102612.000000
s hg38.chr5_KI270793v1_alt     90556 16 +    126136 ACTGTGACCATCAC--GA---
s panTro5.chr5             181354722 16 - 181907262 ACTGTGAGCATCAC--GC---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071109 16 - 183735486 ACTGTGAGCATCAC--GC---
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      160984 16 +    698298 ACTGTGACCATCAC--GC---
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587187 16 - 121039945 ACTGTGATCATCAC--GC---
i nomLeu3.chr6             I 1 C 0
s rheMac8.chr6             179543444 17 - 180051392 ACTGTGACCATCAC-AGC---
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276596 17 - 181584905 ACTGTGACCATCAC-AGC---
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282708 17 -   1764207 ACTGTGACCATCAC-AGC---
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287900 17 -  16742782 ACTATGACCATCAC-AGC---
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590083 17 -  91010382 ACTGTGACCATCAC-AGC---
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185675 17 -    438239 ACTGTGACCATCAC-AGC---
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215424 17 -    514179 ACTGTGACCATCAC-AGC---
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874489 18 + 204313951 ACTGTGACCCTCACAAGC---
i calJac3.chr2             I 1 I 3
s saiBol1.JH378155          16028732 18 +  16417988 ACTGTGACCCTCACAAGC---
i saiBol1.JH378155         I 1 I 2
s otoGar3.GL873745           1896490 16 -   2165740 ACTGGGACCTTCCC-AA----
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735821 20 +  42124431 ATAGAGACCATCAC-AGGGGC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25442182 34 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I

a score=622814.000000
s hg38.chr5_KI270793v1_alt     90572 68 +    126136 CTTCCATCCACGCAGAGCCGCCTTCTCCTGTGCAGGGCAGCT--G--TGCCCA------CACTCACTGGCCCTGGGCC
s panTro5.chr5             181354738 65 - 181907262 CTTCCATCCACGCAGAGCCGCCTT---CTGTGCAGGGCAGCT--G--TGCCCA------CACTCACTGGCCCTGGGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071125 68 - 183735486 CTTCCATCCACGCAGAGCCGCCTTCTCCTGTGCAGGGCAGCT--G--TGCCCA------CACTCACCGGCCCTGGGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161000 68 +    698298 CTTCCATCCACGCAGAGCCGCCTTCTCCTGTGCAGGGCAGCT--G--TGCCCA------CACTCACTGGCCCTGGGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587203 74 - 121039945 CTTCCATCCACGCAGAGCCACCTTCTCCTGTGCAGGGCAGCT--G--TGCCCACACTTGCACTCACTGGCTTTGGGCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179543461 74 - 180051392 CTTCCATCCACTCAGAGCTGCATTCTCCTGTGCAGGGCAGCT--G--TGCCCACATTTGCACTCACTGGCCTTGGGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276613 74 - 181584905 CTTCCATCCACGCAGAGCTGCATTCTCCTGTGCAGGGCAGCT--G--TGCCCACATTTGCACTCACTGGCCTTGGGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282725 74 -   1764207 CTTCCATCCACGCAGAACTGCATTCTCCTGTGCAGGGCAGCT--G--TGCCCACATTTGCACTCACTGGCCTTGGGCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287917 74 -  16742782 CTTCCATCCACGCAGAGCTGCATTCTCCTGTGCAGGGCAGCT--G--TGCCCACATTTGCACTCACTGGCCCTGGGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590100 74 -  91010382 CTTCCATCCACGCAGAGCTGCATTCTCCTGTGCAGGGCAGCT--G--TGCCCACATTTGCACTCACTGGCCCTGGGCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185692 74 -    438239 CTTCCATCCACGCAGAGCTGCATTCTCCTGTGCAGGGCAGCT--G--TGCCCACATTTGCACTCACTGACCCTGGGCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215441 74 -    514179 CTTCCATCCACGCAGAGCTGCATTCTCCTCTGCAGGACAGCT--G--TGCCCACATTTGCACTCACTGGCCCTGGGTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874510 74 + 204313951 TTTCCGTCCACTCAGGGCCACCTTCTCCTATGCAGGGCGGCG--G--TGCCTACACTGGCTCTCACTGGCCTTGCGCC
i calJac3.chr2             I 3 C 0
s saiBol1.JH378155          16028752 74 +  16417988 CTTCCATCCACTCAGGGCCGCCTTCTCCTACGCAGGGCAGTG--G--TGCCTACACTGGCACTCACCGGCCCTGAGCC
i saiBol1.JH378155         I 2 C 0
s aotNan1.NW_018503740v1    25442216 74 -  25620257 CTTCCATCCACTCAGGGCCGCTTTCTCCTACGCAGGGCAGCG--G--TGCCTACACCGGCACTCACTGGCCCTGGGCC
i aotNan1.NW_018503740v1   I 34 I 15
s otoGar3.GL873745           1896506 71 -   2165740 ---GCAGCCTTCAGGAGATGCC--CTCCTATGCAGAATGGCCTGG--TGCTCACACCTGCGTTTGCTGACCCTGAACC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735841 75 +  42124431 CTCCTGTACAGGCAGACAGTCCCCCTTCTGTGT-GGGCGGCC--AGTCGCCCGCCTCTGCCCTCACCAATCCTGGAat
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      114715 122 +    298490 I

a score=82511.000000
s hg38.chr5_KI270793v1_alt     90640 21 +    126136 AGGGACCTC---CCCGGCAGCAGT
s panTro5.chr5             181354803 21 - 181907262 AGGGACCTC---CCCGGCAGCGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071193 21 - 183735486 AGGGACCTC---CCCGGCAGCGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161068 21 +    698298 AGGGACCTC---CCCGGCAGTGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587277 21 - 121039945 ACGGACTTC---CCCAGCAGTGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179543535 21 - 180051392 CCGGACCTc---cctgggagtggt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276687 21 - 181584905 CCGGACCTc---cctgggagtggt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282799 21 -   1764207 CCGGACCTc---cctgggagtggt
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      287991 21 -  16742782 CTGGACCTc---cctgggagtggt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590174 21 -  91010382 CCGGACCTc---cctgggagtggt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185766 21 -    438239 CTGGACCTc---cctgggagtggt
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215515 21 -    514179 CCGGACCTc---cctgggagtggt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874584 15 + 204313951 CCAGAC---------AGGAGTGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028826 15 +  16417988 CTGGAC---------AGGAGtggg
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1896577 23 -   2165740 CTGAATCTTC-ACATGGGGCaggt
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11735916 24 +  42124431 ctggacaatcaacgtgatgccggc
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25442290 15 -  25620257 I
e cebCap1.NW_016108158v1      114715 122 +    298490 I

a score=5118814.000000
s hg38.chr5_KI270793v1_alt     90661 516 +    126136  
s panTro5.chr5             181354824 516 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071214 516 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161089 516 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587298 516 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179543556 516 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181276708 516 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      282820 516 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288012 516 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590195 499 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      185787 516 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      215536 514 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203874599 470 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16028841 471 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      114837 468 +    298490  
i cebCap1.NW_016108158v1   I 122 C 0
s aotNan1.NW_018503740v1    25442305 458 -  25620257  
i aotNan1.NW_018503740v1   I 15 I 132
s otoGar3.GL873745           1896600 519 -   2165740  
i otoGar3.GL873745         C 0 I 2
s canFam3.chr34             11735940 465 +  42124431  
i canFam3.chr34            C 0 C 0

a score=106092.000000
s hg38.chr5_KI270793v1_alt     91177 12 +    126136 TGGGCAGCGCCG
s panTro5.chr5             181355340 12 - 181907262 TGGGCGGCGCCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071730 12 - 183735486 TGGGCGGCGCCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161605 12 +    698298 TGGGCAGCACCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587814 12 - 121039945 TGGGCAGCGCCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544072 12 - 180051392 TGGGCAGCGCCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181277224 12 - 181584905 TGGGCAGCGCCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283336 12 -   1764207 TGGGCAGCGCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288528 12 -  16742782 TGGGCAGCCCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590694 12 -  91010382 TGGGCAGCGCCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186303 12 -    438239 TGGGCAGCGCCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216050 12 -    514179 TGGGCAGCGCCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875069 12 + 204313951 CGGACAGCACCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16029312 12 +  16417988 CGGACGGCACTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      115305 12 +    298490 CGGACAGCACTG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1897121 12 -   2165740 AGTCCATGGCTG
i otoGar3.GL873745         I 2 C 0
s canFam3.chr34             11736405 12 +  42124431 TAGGAAGCGCCG
i canFam3.chr34            C 0 I 358
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I

a score=631911.000000
s hg38.chr5_KI270793v1_alt     91189  86 +    126136 GACCCCA------------------CCTGCCTTCTCAGCGGCTTTC-TGTAGACGCGAGGCCGTGCTAGGGAAGGTGTCTCAGCCCCGCGGTGGGGT--GGGCAGTG
s panTro5.chr5             181355352  86 - 181907262 GACCCCA------------------CCTGCTTTCTCAGCGGCTTTC-TGTAGACGCGAGGCCGTGCTAGGGAAGGTGTCTCAGCCCCGCGGTGGGGT--GGGCAGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071742  86 - 183735486 GACCCCA------------------CCTGCCTTCTCAGCAGCTTTC-TGTAGACACGAGGCCGTGCTAGGGAAGGTGTCTCAGCCCCGCGGTGGGGT--GGGCAGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161617  86 +    698298 GACCCCA------------------CCTGCCTTCTCAGAGGCTTTC-TGTAGAAGCGAGGCTGTGCTAGGGAAGGTATCTCAGCCCCGCGGTGGGGT--GGGCAGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587826  85 - 121039945 GACCCCA------------------CCCGCCTTCTCAGCGGCTTT--TGTAGATGTGAGGCCGTGCTAGGGAAGGTGTCTCAGCCCCGCGGTGGGGT--GGGCAGCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544084  86 - 180051392 GACCCCA------------------TGCAACTTCTCAGCGGCTTTC-CATAGACACAAGGCCATGCTAGGGAAGGTGCCTCAGTCCCGTGGTGGGGT--GGGCAGCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181277236  86 - 181584905 GACCCCA------------------CGCAACTTCTCAGCGGCTTTC-CATAGACACAAGGCCGTGCTAGGGAAGGTGCCTCAGTCCCGCGGTGGGGT--GGGCAGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283348  86 -   1764207 GACCCCA------------------CGCAACGTCTCAGCGGCTTTC-CATAGACACAAGGCCGTGCTAGGGAAGGTGCCTCAGTCCCGCAGTGGGGT--GGGCAGCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288540  86 -  16742782 GACCCCA------------------CGCAACTTCTCAGCGGCTTTC-CATAGACACAAGGCTGTGCTAGGGAAGGTGCCTCAGTCCCGCGGTGGGGT--GGGCAGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590706  86 -  91010382 GACCCCA------------------CGCAACTTCTCAGCGGCTTTC-CATAGACACAAGGCGGTGTTAGGGAAGGTGCCTCAGTCCCGCGGTGGGGT--GGGCAGCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186315  86 -    438239 GACCCCA------------------TGCAACTTCTCAGCGGCTTTC-CATAGACACAAGGCCGTGCTAGGGAAGGTGCCTCAGTCCCGCGGTGGGGT--GGGCAGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216062  86 -    514179 GACCCCA------------------CGCAACTTCTCAGCGGCTTTG-CATAGACACAAGGCCGTGCTAGGGAAGGTGCCTCAGTCCCGCGGTGGGGT--GGGCAGCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875081  84 + 204313951 AACCCCG------------------CGCACCCCTTCGGCAGCTTTC-TGCGGACATGACGCTGTGCTCGGGAAGGTGCCTGAGGCCTAAAGTGGGG----GGCAGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16029324  85 +  16417988 AACCCCA------------------CGTGCCCCCTCGGCGGCTTTC-TGCGGATGTGACACTGTGCTCGGGAAGGTGCCTGAGGCCCGAGGTGGGG---AGGCAGCG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      115317  85 +    298490 AACCCCA------------------CGCGCCCCCTTGGCGGCTTTC-TGCGGACACAACGCTGTGCTCGGGAAGGTGCCTGAGGCCCGAGGTGGGG---GGACAGCG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1897133 106 -   2165740 GTCCCTAGCATACTGGCGAGGATTGCACTCCTTCTT-GTGGCTTACATGAGCAGGGAAGGCCATGCTCCCAAAGAAGCCTGGGCTCCACCCCTGGGGAAGAGCAGTG
i otoGar3.GL873745         C 0 I 48
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e canFam3.chr34             11736417 358 +  42124431 I

a score=620725.000000
s hg38.chr5_KI270793v1_alt     91275 79 +    126136 CCCTGCAGATGCCGTTGAGCGGGCTTTCATC--GGGGAGGTGAGCCGGCCGGAGCAAAGCATCGCCCACTTGTGCAGCGTC
s panTro5.chr5             181355438 79 - 181907262 CCCTGCAGATGCCGTTGAGCGGGCTTTCATT--AGGGAGGTGAGCCGGCCGGAGCAAAGCATCGCCCACCTGTGCGGCGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071828 79 - 183735486 CCCTGCAGATGCCGTTGAGCGGGCTTTCATC--GGGGAGGTGAGCCGGCCGGAGCAAAGCATCGCCCACCTGTGCGGCGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161703 79 +    698298 CCCTGCAGATGCCATTGAGCGGGCTTCCATC--GGGGAGGTGAGCCGGCCGGAGCAAAGCATTGCCCACCTGTGCGGCGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587911 80 - 121039945 CCCTGCAGACGCCATTGAGCGGGCTTTCATC-AGGGGAGGTGAGCCGGCGGGAGCAAAGCATCACCCACCTGTGCAGCGTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544170 81 - 180051392 CCCTGCAGACGCTGTTGAGCGGGCTTTCGTCCAGGAGAGGTGAGCCGATGTAAGCAAAGCATCACCCACCTGTGCGGGGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181277322 81 - 181584905 CCCTGCAGACGCTGTTGAGCGGGCTTTCATCCAGGAGAGGTGAGCCGACGTAAGCAAAGCATCACCCACCTGTGCGGGGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283434 81 -   1764207 CCCTGCAGACGCTGTTGAGCGGGCTTTCGTCCAGGAGAGGTGAGCCGGCGTAAGCAAAGCATCACCCACCTGTGCGGGGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288626 81 -  16742782 CCCTGCAGACGCTGTTGAGCGGGCTTTCGTCCAGGAGAGGTGAGCCGACGTAAGCAAAGCATCACCCACCTGTGCGGGGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590792 81 -  91010382 CCCTGCAGACGCTGTTGAGCGGGCTTTCGTCCAGGAGAGGTGAGTCGACGTAAGCAAAGCATCACCCACCTGTGCGGGGTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186401 81 -    438239 CCCTGCAGACGCTGTTGAGCGGGCTTTCGTCCAGGAGAGGTGAGCCGACGTAAGCAAAGCATCACCCACCTGTGCGGGGTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216148 81 -    514179 CCCTGCAGACGCTGTTGAGCGGGCTTTCGTCCAGGAGACGTGAGCCGACGTAAGCAAAGCATCACCCACCTGTGCGGGGTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875165 76 + 204313951 CCCTGCAGAGGCCATTGAG-GGGCTTTCGTCAA----AGGTGAGCTGGTGTGAGCAAAGCATCACCCACCCGTGTGGTGTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16029409 80 +  16417988 CCCTGCAGAAGCCATTGAG-AGGCTTTCGTCCAAGGGAGGTGAGCTGGTGTGAGCGAAGCATCACCCACCCGTGCGGCGTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      115402 80 +    298490 TCCTGCAGAGGCCATTGAG-GGGCTTTCGTCCAAGGGAGGTGAGCTGGTGTGAGCAAAGCATCACCCACCCGTGCGGCGTC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e canFam3.chr34             11736417 358 +  42124431 I

a score=117749.000000
s hg38.chr5_KI270793v1_alt     91354 20 +    126136 AGACTCACAGAATCGCTAAC
s panTro5.chr5             181355517 20 - 181907262 AGACTCACAGAATCGCTAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071907 20 - 183735486 AGACTCACAGAATCGCTAAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161782 18 +    698298 AGACT--CAGAATCGCTAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120587991 20 - 121039945 AGACTCACAGAATCGCTAAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544251 20 - 180051392 AGAGTCACAGAACCCCTAAC
i rheMac8.chr6             C 0 I 16
s macFas5.chr6             181277403 20 - 181584905 AGAGTCACAGAACCCCTAAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283515 20 -   1764207 AGGGTCACAGAACCCCTAAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288707 20 -  16742782 AGAGTTACAGAATCCCTAAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590873 20 -  91010382 AGAGTTACAGAATCCCTAAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186482 20 -    438239 AGAGTTACATAATCCCTAAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216229 20 -    514179 AGAGTTACAGAATCCCTAAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875241 20 + 204313951 AGAGTCACAGAATCACTGAC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      115482 18 +    298490 --AGTCACAGAATCACTGAC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e canFam3.chr34             11736417 358 +  42124431 I

a score=8698.000000
s hg38.chr5_KI270793v1_alt     91374 2 +    126136 AC
s panTro5.chr5             181355537 2 - 181907262 GC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071927 2 - 183735486 GC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161800 2 +    698298 GC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588011 2 - 121039945 AC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181277423 2 - 181584905 GC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283535 2 -   1764207 GC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288727 2 -  16742782 GC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590893 2 -  91010382 GC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186502 2 -    438239 GC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216249 2 -    514179 AC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875261 2 + 204313951 AT
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      115500 2 +    298490 AC
i cebCap1.NW_016108158v1   C 0 I 79
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e canFam3.chr34             11736417 358 +  42124431 I
e rheMac8.chr6             179544271 16 - 180051392 I

a score=3575.000000
s hg38.chr5_KI270793v1_alt     91376 1 +    126136 A
s panTro5.chr5             181355539 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071929 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161802 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588013 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181277425 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283537 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288729 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590895 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186504 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216251 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875263 1 + 204313951 G
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e canFam3.chr34             11736417 358 +  42124431 I
e rheMac8.chr6             179544271 16 - 180051392 I

a score=35326.000000
s hg38.chr5_KI270793v1_alt     91377 11 +    126136 CAACGCTCAGG
s panTro5.chr5             181355540 11 - 181907262 CAACACTCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071930 11 - 183735486 CAACGCTCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161803 11 +    698298 CAACGCTCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588014 11 - 121039945 CAACGCTCAGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181277426 10 - 181584905 G-ACGCTCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283538 10 -   1764207 G-ACGCTCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288730 10 -  16742782 G-ACGCTCAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590896 11 -  91010382 GAACGCTCAGG
i chlSab2.chr4             C 0 I 3
s manLeu1.NW_012110441v1      186505 10 -    438239 G-ACGCTCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216252 11 -    514179 GAACGCTCAGG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e rheMac8.chr6             179544271 16 - 180051392 I

a score=17561.000000
s hg38.chr5_KI270793v1_alt     91388 7 +    126136 GAGAAAA
s panTro5.chr5             181355551 7 - 181907262 GAGAAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071941 7 - 183735486 GAGAAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161814 7 +    698298 GAGAAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588025 7 - 121039945 GAGAAAG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181277436 1 - 181584905 G------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283548 7 -   1764207 GAGAAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288740 7 -  16742782 GAGAAAA
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      186515 7 -    438239 GAGAAAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216263 7 -    514179 GAGAAAA
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e chlSab2.chr4              90590907 3 -  91010382 I
e rheMac8.chr6             179544271 16 - 180051392 I

a score=18423.000000
s hg38.chr5_KI270793v1_alt     91395 18 +    126136 GCCAGAGTCACAGAATCG
s panTro5.chr5             181355558 18 - 181907262 GCCAGAGTCACAGAATCC
i panTro5.chr5             C 0 T 44
s panPan2.chr5             183071948 18 - 183735486 GCCAGAGTCACAGAATCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161821 17 +    698298 G-CAGAGTCACAGAATCA
i gorGor5.CYUI01015805v1   C 0 I 43
s nomLeu3.chr6             120588032 17 - 121039945 G-CAGAGTCACAGAATCA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181277437 18 - 181584905 GTCAGAGTCACAGAACCC
i macFas5.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=24125.000000
s hg38.chr5_KI270793v1_alt     91413 26 +    126136 CTAATGCACAACGCTCAGGGAGAAAA
s panTro5.chr5             181355532 26 - 181907262 CTAAAGCACAACACTCAGGGAGAAAA
i panTro5.chr5             T 44 C 0
s panPan2.chr5             183071966 25 - 183735486 TGAACACACAACGCTCAGGGAG-AAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161881 26 +    698298 CGAACACACAACGCTCAGGGAGAAAA
i gorGor5.CYUI01015805v1   I 43 C 0
s nomLeu3.chr6             120588049 25 - 121039945 CTAACGCACAACGCTCAGGGAG-AAA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181277455 25 - 181584905 CTAACGCA-GACGCTCAGGGAGAAAA
i macFas5.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=34490.000000
s hg38.chr5_KI270793v1_alt     91439 50 +    126136 GCCAGACTCATAGAATCACTAAGTCACAATGCTCAGGGAGAAAGGCAGAG
s panTro5.chr5             181355558 50 - 181907262 GCCAGAGTCACAGAATCCCGAACACACAACGCTCAGGGAGAAAGTCAGAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183071991 50 - 183735486 GTCAGACTCACAGAAACACTAACACACAACGCTCAGGGAGAAAGTCAGAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      161907 50 +    698298 GCCAAACTCACAGAATCACTAAGTCACAACGCTCAGGGAGAAAGTCAGAC
i gorGor5.CYUI01015805v1   C 0 I 525
s nomLeu3.chr6             120588074 50 - 121039945 GGCAGAGTCACAGAATCACGAGTGCACAACGCTCAGGGAGAAAGGCAGAG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=8694.000000
s hg38.chr5_KI270793v1_alt     91489 11 +    126136 TCACAGAATCA
s panTro5.chr5             181355608 11 - 181907262 TCACAGAAACA
i panTro5.chr5             C 0 T 43
s panPan2.chr5             183072041 11 - 183735486 TCACCGAATCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      162482 11 +    698298 TCACAGAATCA
i gorGor5.CYUI01015805v1   I 525 C 0
s nomLeu3.chr6             120588124 11 - 121039945 TCACAGAATCA
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=59251.000000
s hg38.chr5_KI270793v1_alt     91500 71 +    126136 CTAACACACAACGCTCAGGGAGAAAGTCAGACTCACAGAATCACTAACACACAACGCTCAGGGAGAAAGTC
s panTro5.chr5             181355576 71 - 181907262 CGAACACACAACGCTCAGGGAGAAAGTCAGACTCACAGAAACACTAACACACAACGCTCAGGGAGAAAGTC
i panTro5.chr5             T 43 C 0
s panPan2.chr5             183072052 71 - 183735486 CTAACACACAACGCTCAGGGAGAAAGTCAGACTCACAGAATCACTAACACACAACGCTCAGGGAGAAAGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      162493 71 +    698298 CGAACACACAACGCTCAGGGAGAAAGTCAGACTCACAGAATCACTAACACACAACGCTCAGGGAGAAAGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588135 71 - 121039945 CGAGTGCACAACGCTCAGGGAGAAAGGCAGAGTCACAGAATCACGAGTGCACAACGCTCAGGGAGAAAGTC
i nomLeu3.chr6             C 0 T 86
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=2470.000000
s hg38.chr5_KI270793v1_alt     91571 4 +    126136 AGAC
s panTro5.chr5             181355647 4 - 181907262 AGAC
i panTro5.chr5             C 0 I 43
s panPan2.chr5             183072123 4 - 183735486 AGAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      162564 4 +    698298 AGAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588120 4 - 121039945 AGAG
i nomLeu3.chr6             T 86 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=17952.000000
s hg38.chr5_KI270793v1_alt     91575 23 +    126136 TCACCGAATCACCAACACACAAC
s panTro5.chr5             181355694 23 - 181907262 TCACAGAATCACTAACACACAAC
i panTro5.chr5             I 43 I 2791
s panPan2.chr5             183072127 23 - 183735486 TCACAGAATCACTAATACACAAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      162568 23 +    698298 TCACAGAATCACTAACACACAAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588124 23 - 121039945 TCACAGAATCACGAGTGCACAAC
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=9260.000000
s hg38.chr5_KI270793v1_alt     91598 11 +    126136 GCTCAGGGAGA
s panTro5.chr5             181358508 11 - 181907262 GCTCAGGGAGA
i panTro5.chr5             I 2791 C 0
s panPan2.chr5             183072150 11 - 183735486 ACACAGGGAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      162591 11 +    698298 GCTCAGGGAGA
i gorGor5.CYUI01015805v1   C 0 I 120
s nomLeu3.chr6             120588147 11 - 121039945 GCTCAGGGAGA
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=25138.000000
s hg38.chr5_KI270793v1_alt     91609 44 +    126136 AAAGCC---------------------------------------AGAGTCACAGAATCGCTAATGCACAACGCTCAGGGAGA
s panTro5.chr5             181358519 43 - 181907262 AAGG-C---------------------------------------AGAGTCACAGAATCACTAATACACAACGGACAGGGAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183072161 83 - 183735486 AAAGCCAGACTCACAGAATCACTAACGCACAACGCTCAGGGAGAAAGAGTCACAGAATCACTAACACACAACACTCAGGGAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      162722 44 +    698298 AAAGTC---------------------------------------AGACTCACAGAATCACTAACGCACAACGCTCAGGGAGA
i gorGor5.CYUI01015805v1   I 120 I 405
s nomLeu3.chr6             120588158 43 - 121039945 -AAGGC---------------------------------------AGAGTCACAGAATCACGAGTGCACAACGCTCAGGGAGA
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=2242.000000
s hg38.chr5_KI270793v1_alt     91653 3 +    126136 AAA
s panTro5.chr5             181358562 3 - 181907262 AAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183072244 3 - 183735486 AAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      163171 3 +    698298 AAA
i gorGor5.CYUI01015805v1   I 405 C 0
s nomLeu3.chr6             120588201 3 - 121039945 AAG
i nomLeu3.chr6             C 0 I 650
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=1187.000000
s hg38.chr5_KI270793v1_alt     91656 2 +    126136 GC
s panTro5.chr5             181358565 2 - 181907262 GC
i panTro5.chr5             C 0 T 2850
s panPan2.chr5             183072247 2 - 183735486 GT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      163174 2 +    698298 GT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588854 2 - 121039945 GT
i nomLeu3.chr6             I 650 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=12486.000000
s hg38.chr5_KI270793v1_alt     91658 28 +    126136 CAGACTCATAGAATCACTAAGTCACAAT
s panPan2.chr5             183072249 28 - 183735486 CAGACTCACCGAGTCACTAACACACAAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      163176 28 +    698298 CAGACTCACAGAATCACTAACACACAAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588856 28 - 121039945 CAGACTCACAGAATCGCTAACACACAAC
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181358567 2850 - 181907262 T
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=17524.000000
s hg38.chr5_KI270793v1_alt     91686 20 +    126136 GCTCAGGGAGAAAGGCAGAG
s panTro5.chr5             181355717 20 - 181907262 GCTCAGGGAGAAAGGCAGAG
i panTro5.chr5             T 2850 T 86
s panPan2.chr5             183072277 20 - 183735486 GCTCAGGGAGAAAGGCAGAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      163204 20 +    698298 GCTCAGGGAGAAAGTCAGAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588884 20 - 121039945 GCTCAGGGAGAAAGGCAGAG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=11792.000000
s hg38.chr5_KI270793v1_alt     91706 13 +    126136 TCACAGAATCACT
s panTro5.chr5             181355651 13 - 181907262 TCACAGAATCACT
i panTro5.chr5             T 86 C 0
s panPan2.chr5             183072297 13 - 183735486 TCACAGAATCACT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      163224 13 +    698298 TCACAGAATCACT
i gorGor5.CYUI01015805v1   C 0 I 281
s nomLeu3.chr6             120588904 13 - 121039945 TCACAGAATCGCT
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=58823.000000
s hg38.chr5_KI270793v1_alt     91719 69 +    126136 AACACACAACGCTCAGGGAGAAAGTCAGACTCACAGAATCACTAACACACAACGCTCAGGGAGAAAGTC
s panTro5.chr5             181355664 69 - 181907262 AACACACAACGCTCAGGGAGAAAGTCAGACTCACAGAATCACTAACACACAACGCTCAGGGAGAAAGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183072310 69 - 183735486 AACACACAACGCTCAGGGAGAAAGTCAGACTCACCGAATCACTAACACACAACGCTCAGGGAGAAAGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      163518 69 +    698298 AACACACAACGCTCAGGGAGAAAGTCAGACTCACAGAATCACTAACACACAACGCTCAGGGAGAAAGTC
i gorGor5.CYUI01015805v1   I 281 C 0
s nomLeu3.chr6             120588917 69 - 121039945 AACACACAACGCTCAGGGAGAAAGGCAGAGTCACAGAATCACGAGTGCACAACGCTCATGGAGAAAGTC
i nomLeu3.chr6             C 0 T 866
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=2820.000000
s hg38.chr5_KI270793v1_alt     91788 3 +    126136 AGA
s panTro5.chr5             181355733 3 - 181907262 AGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183072379 3 - 183735486 AGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      163587 3 +    698298 AGA
i gorGor5.CYUI01015805v1   C 0 I 1656
s nomLeu3.chr6             120588120 3 - 121039945 AGA
i nomLeu3.chr6             T 866 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=16472.000000
s hg38.chr5_KI270793v1_alt     91791 23 +    126136 CTCACCGAATCACCAACACACAA
s panTro5.chr5             181355736 23 - 181907262 GTCACCGAATCACTAACACACAA
i panTro5.chr5             C 0 I 2592
s panPan2.chr5             183072382 23 - 183735486 GTCACAGAATCACTAACACACAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      165246 23 +    698298 CTCACAGAATCACTAACACACAA
i gorGor5.CYUI01015805v1   I 1656 C 0
s nomLeu3.chr6             120588123 23 - 121039945 GTCACAGAATCACGAGTGCACAA
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=8076.000000
s hg38.chr5_KI270793v1_alt     91814 14 +    126136 CGCTCAGGGAGAAA
s panPan2.chr5             183072405 14 - 183735486 CGCTCAGGGAGAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      165269 14 +    698298 CGCTCAGGGAGAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588146 14 - 121039945 CGCTCAGGGAGAAA
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181355759 2592 - 181907262 I
e aotNan1.NW_018503740v1    25442763 132 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=689.000000
s hg38.chr5_KI270793v1_alt     91828 2 +    126136 GT
s panPan2.chr5             183072419 2 - 183735486 GG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      165283 2 +    698298 GT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588160 2 - 121039945 GG
i nomLeu3.chr6             C 0 C 0
s aotNan1.NW_018503740v1    25442895 2 -  25620257 GT
i aotNan1.NW_018503740v1   I 132 C 0
e panTro5.chr5             181355759 2592 - 181907262 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=26066.000000
s hg38.chr5_KI270793v1_alt     91830 23 +    126136 CAGAGTCACAGAATCACTGACAC
s panTro5.chr5             181358351 23 - 181907262 CAGACTCACAGAATCACTAACAC
i panTro5.chr5             I 2592 C 0
s panPan2.chr5             183072421 23 - 183735486 CAGAGTCACAGAATCACTAATAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      165285 23 +    698298 CAGACTCACAGAATCACTAACAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588162 23 - 121039945 CAGAGTCACAGAATCACGAGTGC
i nomLeu3.chr6             C 0 C 0
s aotNan1.NW_018503740v1    25442897 23 -  25620257 CAGAGTCACAGAGTCACTGACAC
i aotNan1.NW_018503740v1   C 0 I 129
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=5206.000000
s hg38.chr5_KI270793v1_alt     91853 6 +    126136 ACAACG
s panTro5.chr5             181358374 6 - 181907262 ACAACG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183072444 6 - 183735486 ACAACA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      165308 6 +    698298 ACAACG
i gorGor5.CYUI01015805v1   C 0 I 1098
s nomLeu3.chr6             120588185 6 - 121039945 ACAACG
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=10604.000000
s hg38.chr5_KI270793v1_alt     91859 12 +    126136 CTCAGGGAGAAA
s panTro5.chr5             181358380 12 - 181907262 CTCAGGGAGAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183072450 12 - 183735486 CACAGGGAGAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      166412 12 +    698298 CTCAGGGAGAAA
i gorGor5.CYUI01015805v1   I 1098 I 282
s nomLeu3.chr6             120588191 12 - 121039945 CTCAGGGAGAAA
i nomLeu3.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=207.000000
s hg38.chr5_KI270793v1_alt     91871 1 +    126136 G
s panTro5.chr5             181358392 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183072462 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120588203 1 - 121039945 G
i nomLeu3.chr6             C 0 I 650
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I
e gorGor5.CYUI01015805v1      166424 282 +    698298 I

a score=300.000000
s hg38.chr5_KI270793v1_alt     91872 1 +    126136 G
s panPan2.chr5             183072463 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120588854 1 - 121039945 G
i nomLeu3.chr6             I 650 C 0
e panTro5.chr5             181358393 0 - 181907262 C
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I
e gorGor5.CYUI01015805v1      166424 282 +    698298 I

a score=64890.000000
s hg38.chr5_KI270793v1_alt     91873 81 +    126136 CCAGACTCACAGAATCACTAACGCACAACGCTCAGGGAGAAAG----AGTCACAGAATCACTAACACACAACGTTCAGGGAGAAA
s panTro5.chr5             181358393 85 - 181907262 TCAGACTCACGGAATCACTAACGCACGATGCCCAGGGAGAAAGGCAGAGTCACCGAATCACTAACGCACAACGCTCAGGGAGAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183072464 85 - 183735486 CCAGACTCACAGAATCACTAACACACAACGCTCAGGGAGAAAGGCAGAGTCACCGAATCACTAACACACAACGCTCAGGGAGAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      166706 80 +    698298 TCAGACTCACAGAATCACTAAC-CACAACGCTCAGGGAGAAAG----ACTCACAGAATCACGAACACACAACGCTCAGGGAGAAA
i gorGor5.CYUI01015805v1   I 282 C 0
s nomLeu3.chr6             120588855 85 - 121039945 TCAGACTCACAGAATCGCTAACACACAACGCTCAGGGAGAAAGGCAGAGTCACAGAATCGCTAACACACAACGCTCAGGGAGAAA
i nomLeu3.chr6             C 0 T 86
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=21751.000000
s hg38.chr5_KI270793v1_alt     91954 27 +    126136 GTCAGACTCACCGAATCACTAACACAC
s panTro5.chr5             181358478 27 - 181907262 GGCAGAGTCACCGAATCACTAACACAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183072549 27 - 183735486 GTCAGACTCACCGAATCACCAACACAC
i panPan2.chr5             C 0 I 4808
s gorGor5.CYUI01015805v1      166786 27 +    698298 GTCAGACTCACAGAATCACTAACACAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588854 27 - 121039945 GTCAGACTCACAGAATCGCTAACACAC
i nomLeu3.chr6             T 86 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=32684.000000
s hg38.chr5_KI270793v1_alt     91981 40 +    126136 AACGCTCAGGGAGAAAGG-CAGAGTCACAGAATCACTAACA
s panTro5.chr5             181358505 40 - 181907262 AACGCTCAGGGAGAAAGG-CAGAGTCACAGAATCACTAATA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077384 41 - 183735486 AACGCTCAGGGAGAAAGGCCAGACTCACAGAATCACTAACG
i panPan2.chr5             I 4808 C 0
s gorGor5.CYUI01015805v1      166813 40 +    698298 AACGCTCAGGGAGAAAGT-CAGACTCACAGAATCACTAACA
i gorGor5.CYUI01015805v1   C 0 I 2373
s nomLeu3.chr6             120588881 40 - 121039945 AACGCTCAGGGAGAAAGG-CAGAGTCACAGAATCGCTAACA
i nomLeu3.chr6             C 0 T 866
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=48670.000000
s hg38.chr5_KI270793v1_alt     92021 63 +    126136 CACAACGTTCAGGGAGAAAGGCCAGACTCACAGAATCACTAACGCACAACGCTCAGGGAGAAA
s panTro5.chr5             181358545 63 - 181907262 CACAACGGACAGGGAGAAAAGCCAGACTCACAGAATCACTAACACACAACGCTCAGGGAGAAA
i panTro5.chr5             C 0 T 84
s panPan2.chr5             183077425 62 - 183735486 CACAACGCTCAGGGAGAAA-GTCAGACTCACAGAATCACGAACACACAATGCTCAGGGAGAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169226 62 +    698298 CACAACGCTCAGGGAGAAA-GTCAGACTCACAGAATCACTAACACACAACGCTCAGGGAGAAA
i gorGor5.CYUI01015805v1   I 2373 C 0
s nomLeu3.chr6             120588055 62 - 121039945 CACAACGCTCAGGGAGAAA-GGCAGAGTCACAGAATCACGAGTGCACAACGCTCAGGGAGAAA
i nomLeu3.chr6             T 866 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=1407.000000
s hg38.chr5_KI270793v1_alt     92084 3 +    126136 GGC
s panPan2.chr5             183077487 3 - 183735486 GGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169288 3 +    698298 GAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588117 3 - 121039945 GGC
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181358608 84 - 181907262 T
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=15514.000000
s hg38.chr5_KI270793v1_alt     92087 20 +    126136 AGAGTCACAGAATCACTAAT
s panTro5.chr5             181358524 20 - 181907262 AGAGTCACAGAATCACTAAT
i panTro5.chr5             T 84 C 0
s panPan2.chr5             183077490 20 - 183735486 AGAGTCACAGAATCACTAAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169291 16 +    698298 ----TCACAGAATCACTAAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588120 20 - 121039945 AGAGTCACAGAATCACGAGT
i nomLeu3.chr6             C 0 I 43
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=14316.000000
s hg38.chr5_KI270793v1_alt     92107 21 +    126136 ACACAACGGACAGGGAGAAAA
s panTro5.chr5             181358544 21 - 181907262 ACACAACGGACAGGGAGAAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077510 21 - 183735486 ACACAACGGACAGGGAGAAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169307 20 +    698298 ACACAACGCTCAGGGAG-AAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588183 21 - 121039945 GCACAACGCTCAGGGAGAAAG
i nomLeu3.chr6             I 43 I 650
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=3115.000000
s hg38.chr5_KI270793v1_alt     92128 4 +    126136 GCCA
s panTro5.chr5             181358565 4 - 181907262 GCCA
i panTro5.chr5             C 0 I 39
s panPan2.chr5             183077531 4 - 183735486 GCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169327 4 +    698298 GTCA
i gorGor5.CYUI01015805v1   C 0 I 39
s nomLeu3.chr6             120588854 4 - 121039945 GTCA
i nomLeu3.chr6             I 650 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=16702.000000
s hg38.chr5_KI270793v1_alt     92132 19 +    126136 GACTCACAGAATCACTAAC
s panTro5.chr5             181358608 19 - 181907262 GACTCACAGAATCACTAAC
i panTro5.chr5             I 39 C 0
s panPan2.chr5             183077535 19 - 183735486 GACTCACAGAATCACTAAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169370 19 +    698298 GACTCACAGAATCACGAAC
i gorGor5.CYUI01015805v1   I 39 C 0
s nomLeu3.chr6             120588858 19 - 121039945 GACTCACAGAATCGCTAAC
i nomLeu3.chr6             C 0 T 737
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=476.000000
s hg38.chr5_KI270793v1_alt     92151 1 +    126136 G
s panTro5.chr5             181358627 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077554 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169389 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588140 1 - 121039945 G
i nomLeu3.chr6             T 737 I 780
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=17280.000000
s hg38.chr5_KI270793v1_alt     92152 18 +    126136 CACAACGCTCAGGGAGAA
s panTro5.chr5             181358628 18 - 181907262 CACAACGCTCAGGGAGAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077555 18 - 183735486 CACAACGCTCAGGGAGAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169390 18 +    698298 CACAACGCTCAGGGAGAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588921 18 - 121039945 CACAACGCTCAGGGAGAA
i nomLeu3.chr6             I 780 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897239 48 -   2165740 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489  0 +  16417988 C
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e chlSab2.chr4              90590907  3 -  91010382 I
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=2762.000000
s hg38.chr5_KI270793v1_alt     92170 3 +    126136 AGG
s panTro5.chr5             181358646 3 - 181907262 AGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077573 3 - 183735486 AGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169408 3 +    698298 AGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588939 3 - 121039945 AGG
i nomLeu3.chr6             C 0 C 0
s otoGar3.GL873745           1897287 3 -   2165740 AGG
i otoGar3.GL873745         I 48 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e chlSab2.chr4              90590907 3 -  91010382 I
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C
e rheMac8.chr6             179544271 16 - 180051392 I

a score=2016.000000
s hg38.chr5_KI270793v1_alt     92173 3 +    126136 CAG
s panTro5.chr5             181358649 3 - 181907262 CAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077576 1 - 183735486 C--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169411 3 +    698298 CAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588942 3 - 121039945 CAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544287 3 - 180051392 CAG
i rheMac8.chr6             I 16 C 0
s chlSab2.chr4              90590910 3 -  91010382 CAG
i chlSab2.chr4             I 3 C 0
s otoGar3.GL873745           1897290 3 -   2165740 GAG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e saiBol1.JH378155          16029489 0 +  16417988 C
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C

a score=31512.000000
s hg38.chr5_KI270793v1_alt     92176 15 +    126136 AGTCAC---AGAATCACT
s panTro5.chr5             181358652 15 - 181907262 AGTCAC---AGAATCACT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077577 13 - 183735486 --TCAC---AGAATCACT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      169414 15 +    698298 ACTCAC---AGAATCACT
i gorGor5.CYUI01015805v1   C 0 I 1932
s nomLeu3.chr6             120588945 15 - 121039945 AGTCAC---AGAATCACG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544290 15 - 180051392 AGTCAC---AGAACCCCT
i rheMac8.chr6             C 0 C 0
s chlSab2.chr4              90590913 15 -  91010382 AGCTAC---AGAATCCCT
i chlSab2.chr4             C 0 C 0
s saiBol1.JH378155          16029489 15 +  16417988 AGTCAC---AGAATCACT
i saiBol1.JH378155         C 0 I 2
s otoGar3.GL873745           1897293 15 -   2165740 ---CACCTGAGAATTCCT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e calJac3.chr2             203875264  0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C

a score=4478.000000
s hg38.chr5_KI270793v1_alt     92191 7 +    126136 -AACACAC
s panTro5.chr5             181358667 7 - 181907262 -AACGCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077590 7 - 183735486 -AACACAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171361 7 +    698298 -AACACAC
i gorGor5.CYUI01015805v1   I 1932 C 0
s nomLeu3.chr6             120588960 7 - 121039945 -AGTGCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544305 7 - 180051392 -AACGCAG
i rheMac8.chr6             C 0 C 0
s chlSab2.chr4              90590928 7 -  91010382 -AACGCGG
i chlSab2.chr4             C 0 C 0
s saiBol1.JH378155          16029506 4 +  16417988 -AACG---
i saiBol1.JH378155         I 2 C 0
s otoGar3.GL873745           1897308 6 -   2165740 AAACCC--
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e calJac3.chr2             203875264 0 + 204313951 C
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522 0 -    438239 C
e cerAty1.NW_012009470v1      288747 0 -  16742782 C
e colAng1.NW_012118799v1      216270 0 -    514179 C
e macNem1.NW_012012389v1      283555 0 -   1764207 C
e macFas5.chr6             181277480 0 - 181584905 C

a score=43467.000000
s hg38.chr5_KI270793v1_alt     92198 16 +    126136 AACACTCAG------------GGAGAAA---
s panTro5.chr5             181358674 16 - 181907262 AACGCCCAG------------GGAGAAA---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077597 16 - 183735486 AACGCTCAG------------GGAGAAA---
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171368 16 +    698298 AACGCTCAG------------GGAGAAA---
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588967 16 - 121039945 AACGCTCAT------------GGAGAAA---
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544312 15 - 180051392 -ACGCTCAG------------GGAGAAA---
i rheMac8.chr6             C 0 I 1
s chlSab2.chr4              90590935 16 -  91010382 AACGCTCAG------------GGAGAAA---
i chlSab2.chr4             C 0 I 1
s calJac3.chr2             203875264 16 + 204313951 GACGCTCGG------------GGAGAAA---
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16029510 16 +  16417988 GACGCGCGG------------GGAGAAA---
i saiBol1.JH378155         C 0 I 1
s otoGar3.GL873745           1897314 31 -   2165740 AATGCTCAGTCGCTTTTGTGCGGGGAAGTAG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e canFam3.chr34             11736417 358 +  42124431 I
e manLeu1.NW_012110441v1      186522  0 -    438239 C
e cerAty1.NW_012009470v1      288747  0 -  16742782 C
e colAng1.NW_012118799v1      216270  0 -    514179 C
e macNem1.NW_012012389v1      283555  0 -   1764207 C
e macFas5.chr6             181277480  0 - 181584905 C

a score=391269.000000
s hg38.chr5_KI270793v1_alt     92214 62 +    126136 GGCCCGGCTAGGAAGTGGCGAGCCAGC-----------AGGTGGTCGGCTTGTTAGGGCTGTGACAGAGTCCA
s panTro5.chr5             181358690 62 - 181907262 GGCCCGGCTTGGAAGTGGCGAGCCAGC-----------GGGTGGTCGGCTTGTTAGGGCTGTGACAGAGGCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077613 62 - 183735486 GGCCCGGCTTGGAAGTGGCGAGCCAGT-----------GGGTGGTCGGCTTGTTAGGGCTGAGACAGAGGCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171384 61 +    698298 GGCCCGGCTAGGAAGTGGCGAGCCAGT-----------GGGTGGTCGGCTTGTTA-GGCTGTGACAGAGGCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120588983 62 - 121039945 GTCCTGGCTAGGAAGTGTCGAGCCAGC-----------GGGTGGTCGGCTTGTCAGGGCTGTGAGAGAGGCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544328 62 - 180051392 GGCCTGGCTAGGAGGTGGCGAGCCAGT-----------GGGTTCTCGGCTCATTAGGGCTGCGACAGAGGCAA
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181277480 62 - 181584905 GGCCTGGCTAGGAGGTGGCGAGCCAGT-----------GGGTTCTCGGCTCATTAGGGCTGCGACAGAGGCAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283555 62 -   1764207 GGCCTGGCTAGGAGGTGGCGAGCCAGT-----------GGGTTCTCGGCTCCTTAGGGCTGCGACAGAGGCGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288747 62 -  16742782 GGCCTGGCTAGGAAGTGGCGAGCCAGC-----------GGGTTCTCGGCTCATTAGGGCTGCGACAGAGGCAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90590952 62 -  91010382 GGCCTGGCTAGGAAGTGGCGAGCCAGC-----------GGGTTCTCGGCTCATTAGGGCTGCGACAGAGGCAA
i chlSab2.chr4             I 1 C 0
s manLeu1.NW_012110441v1      186522 62 -    438239 GGCCTGGCTAGGAAGTGGCGAGCCAGC-----------GGGTTCTCGGCTCATTAGGGCTGCGACAGAGGCAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216270 62 -    514179 GGCCTGGCTAGGAAGTGGCGAGCCAGC-----------GGGTTCTCGGCTCGTTAGGGCTGCGACTGAGGCAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875281 61 + 204313951 GACCAGGCTGGGAAGTGGTGAGCCCAT-----------GTGAGCTTGGCACCTTAGGGC-GAGACAGAGGCTG
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16029527 61 +  16417988 GACCAGGCTGGGAAGTGGGGGGCCCGT-----------GTGAGCTTGGCACCTTAGGGC-AAGACAGAGGCTG
i saiBol1.JH378155         I 1 C 0
s otoGar3.GL873745           1897345 73 -   2165740 AGATGAGTCAGGACGGGGTGGGCCAGCCATATCATTCTGCTTTATTGGCACCTAATGTCTGTACCAGGGGCCA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e cebCap1.NW_016108158v1      115502 79 +    298490 I
e canFam3.chr34             11736417 358 +  42124431 I

a score=81628.000000
s hg38.chr5_KI270793v1_alt     92276 9 +    126136 CTTTGTCTC
s panTro5.chr5             181358752 9 - 181907262 CTTTGTCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077675 9 - 183735486 CTTTGTCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171445 9 +    698298 CTTTGTGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589045 9 - 121039945 CTTTGTCTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544390 9 - 180051392 CTTTGTCTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181277542 9 - 181584905 CTTTGTCTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283617 9 -   1764207 CTTTGTCTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288809 9 -  16742782 CTTTGTCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591014 9 -  91010382 CTTTGTCTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186584 9 -    438239 CTTTGTCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216332 9 -    514179 CTTTGTCTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875342 9 + 204313951 CTTTGTCTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16029588 9 +  16417988 CTTTGTCTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      115581 9 +    298490 CTTTGTCTC
i cebCap1.NW_016108158v1   I 79 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I
e otoGar3.GL873745           1897418 0 -   2165740 C
e canFam3.chr34             11736417 358 +  42124431 I

a score=300756.000000
s hg38.chr5_KI270793v1_alt     92285 44 +    126136 TGCCGAGGGCTTACT--------CTGCTGCAGGGAGCTGGGGGCCCTGTGCA
s panTro5.chr5             181358761 44 - 181907262 TGCCGAGGGCTTACT--------CTGCTGCAGGGAGCTGGGGGCCCTGTGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077684 44 - 183735486 TGCCGAGGGCTTACT--------CTGCTGCAGGGAGCTGGGGGCCCTGTGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171454 44 +    698298 TGCTGAGGGCTTACT--------CTGCTGCAGGGAGCTGGGGGCCCTGCGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589054 44 - 121039945 TGCCGAGAGCTTACT--------CTGCTGCAGGGAGCTGGGGGCCCTGTGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544399 43 - 180051392 TGCCGAGGGATCCCT--------CTG-TGCAGGGAGCTGGGGACCCTGTGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181277551 43 - 181584905 TGCCGAGGGATCCCT--------CTG-TGCAGGGAGCTGGGGACCCTGTGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283626 43 -   1764207 TGCCGAGGGATCCCT--------CTG-TGCCGGGAGCTGGGGGCCCTGTGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288818 44 -  16742782 TGCCGAGGGATCCCT--------CTGCTGCAGGGAGCTGGGGACCCTGTGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591023 44 -  91010382 TGCCGAGGGATCCCT--------CTGCTGCAGGGAGCTGCGGACCCTGTGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186593 52 -    438239 TGCCGAGGGATCCCTCTGCTGCACTGCTGCAGGGAGCTGGGGACCCTGTGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216341 36 -    514179 TGCCGAGGGATCACT--------CTGCTGCCGGGA--------CCCTGTGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875351 42 + 204313951 TGCCAAGACATCAC----------TGCCGCAGGGAGCTGGGGACCCCATGCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16029597 44 +  16417988 TGCCAAGAGATCACT--------GTGCCGCAGGGAGCTGCGGACCCCATGTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      115590 44 +    298490 TGCCAAGAGATCGCT--------GTGCCGCAGGGAGCTGGGGACCCCATGCG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1897418 39 -   2165740 -----CGTGGTGGCT--------TTGTCGGGGAAGCCAGAGGACCCTGTTTG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11736775 37 +  42124431 TGCCGATGACCCGGC--------CCTCTTCAGGAGTGT-------CTGTGCA
i canFam3.chr34            I 358 C 0
e aotNan1.NW_018503740v1    25442920 129 -  25620257 I

a score=2991445.000000
s hg38.chr5_KI270793v1_alt     92329 289 +    126136 CACATCCAAGGAAAACACCCTTGTTGTCACA-GCCGAA-ACAACAGACGCATGAGAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCATTTCCTGGCAAGC-AAAGGCTGTTTGGGCCTCTGCATCTGCGGCTCTGGCGTCTG-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTCTGAACCACGAGGAAAAATGTCCTGATTTGCATATTGTCTTCCACCCAAAGC----------------T------GTCGCCTGCGT--------CCCT-GG-CTCGCCCTGCCCAGGTGGGCTGCGG--------------------
s panTro5.chr5             181358805 289 - 181907262 CACATCCAAGGAAAACACCCTTGTTGTCACA-GCCGAA-ACAACAGACGCATGAGAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCATTTCCTGGCAAGC-AAAGGCTGTTTGGGCCTCTGCATCTGCGGCTCTGGCATCTG-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTCTGAACCACGAGGAAAAACGTCCTGATTTGCATATTGTCTTCCACCCAAAGC----------------T------GTCGCCTGCGT--------CCCT-GG-CTCGCCCTGCCCAGGTGGGCTGCGG--------------------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183077728 289 - 183735486 CACATCCAAGGAAAACACCCTTGTTGTCACA-GCCGAA-ACAACAGACGCATGAGAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCATTTCCTGGCAAGC-AAAGGCTGTTTGGGCCTCTGCATCTGCGGCTCTGGCATCTG-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTCTGAACCACGAGGAAAAACGTCCTGATTTGCATATTGTCTTCCACCCAAAGC----------------T------GTCGCCTGCGT--------CCCT-GG-CTCGCCCTGCCCAGGTGGGCTGCGG--------------------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171498 289 +    698298 CACATCCAAGGAAAACACCCTTGTTGTCACA-GCCGAA-ACAACAGACGCATGAGAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCATTTCCTGGCAAGC-AAAGGCTGTTTGGGCCTCTGCATCTGCGGCTCTGGCGTCTG-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTCTGAACCACGAGGAAAAATGTCCTGATTTGCATATTGTCTTCCACCCAAAGC----------------T------GTCGCCTGGGT--------CCCT-GG-CTCGCCCTGCCCAGGTGGGCTGAGG--------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589098 290 - 121039945 CACATCCAAGGAAAACACCCTTGTTGTCACA-GCCGAA-ACAACAGAGGCATGAGAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCCAAGGGGGCATTTCCTGGCAAGC-AAAGCCTGTTTGGGCCTCTGCATCTGTGGCTCTGGCGTCTC-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTCTGAACCACGAGGAAAAACGTCCTGATTTGCATATTGTCTTCCACCCAAAGG----------------T------GTCACCTGCGT--------CCCT-GG-CTCGCCTTGCCCAGGTGGGCTGCAG--------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544442 288 - 180051392 CACATCCAAGGAAAACACCCTCGTTGTCACA-GACAAA-ACAACAGACACATCCCAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCGTTTCCTGGC-AGC-AAAGGCTGTTTGGGCCTCTGGATCTGTGGCTCCGGCGTCTG-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTCTGAACCACGAGGAAAAACGTCCTGATTTGCATATTGTCTTCCACCCAAAGC----------------T------GTCACCTGTGT--------CCCT-GG-CTCACCTTGCCCAGGTGGGCTGCGG--------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181277594 288 - 181584905 CACATCCAAGGAAAACACCCTCATTGTCACA-GACAAA-ACAACAGACACATCCCAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCGTTTCCTGGC-AGC-AAAGGCTGTTTGGGCCTCTGGATCTGTGGCTCCGGTGTCTG-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTCTGAACCACGAGGAAAAACGTCCTGATTTGCATATTGTCTTCCACCCAAAGC----------------T------GTCACCTGTGT--------CCCT-GG-CTCACCTTGCCCAGGTGGGCTGCGG--------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283669 288 -   1764207 CACATCCAAGGAAAACGCCCTCGTTGTCACA-GACAAA-ACAACAGACACATCCCAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCGTTTCCTGGC-AGC-AAAGGCTGTTTGGGCCTCTGGATCTGTGGCTCCGGCGTCTG-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTCTGAACCACGAGGAAAAACGTCCTGATTTGCATATTGTCTTCCACCCAAAGC----------------T------GTCACCTGTGT--------CCCT-GG-CTCACCTTGCCCAGGTGGGCTGCGG--------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      288862 288 -  16742782 CACATCCAAGGAAAACACCCTCGTTGTCACA-GACAAA-ACAACAGACACGTCACAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCGTTTCCTGGC-AGC-ACAGGCTGTTTGGGCCTCTGGATCTGTGGCTCCCGCGTCTG-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTCTGAACCACGAGGAAAAACGTCCTGATTTGCATATTGTCTTCCACCCAAAGC----------------T------GTCACCTGTGT--------CCCT-GG-CTCACCTTGCCCAGGTGGGCTGTGG--------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591067 288 -  91010382 CACATCCAAGGAAAACACCCTCGTTGTCACA-GACAAA-ACAACAGACACATCACAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCGTTTCCTGGC-AGC-AAAGGCTGTTTGGGCCTCTGGATCTGTGGCTCCGGCGTCTG-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTCTGAACCACGAGGAAAAATGTCCTGATTTGCATATTGTCTTCCACCCAAAGC----------------T------GTCACCTGTGT--------CCCT-GG-CTCACCTTGCCCAGGTAGGCTGCGG--------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186645 288 -    438239 CACATCCAAGGAAAACACCCTCGTTGTCACA-GACAAA-ACAACAGACACGTCACAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCGTTTCCTGGC-AGC-ACAGGCTGTTTGGGCCTCTGGATCTGTGGCTCCGGCGTCTG-CCTGGGGCTTGGCTGAAGCCCTGTCAAGGAAGCACTTGTGAACCACGAGGAAAAACGTCCTGATTTGCATATTGTCTTCCACCCAGAGC----------------T------GTCACCTGTGT--------CCCT-GG-CTCACCTTGCCCAGGTGGGCTGTGG--------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216377 288 -    514179 CACATCCAAGGAAAACGCCCTCGTTGTCACA-GACAAA-ACAACAGACACGTCACAGATTGATTTTTGAAAATATTATTCCCGAAATCT-AAACATCC-AGGGGGCGTTTCCTGGC-AGC-AAAGGCTGTTCGGGCCTCTGGATCTGCGGCTCCGGTGTCTG-CCTGGGGCTTGGCTGAGGCCCTGTCAAGGAAGCACTTCTGAACCAGGAGGAAAAACGTCCTGATTTGCATATTGTCTTCCACCCAAAGC----------------T------GTCACCTGTGT--------CTCT-GG-CTCACCTTGCCCAGGTGGGCTGCGG--------------------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875393 284 + 204313951 CACATCCAAGGAAAACACCCTCATCGTCACA-GACAAA-ACAACAGATACATGAGACATTGATTTTTGAAAATATTATTCCTGAAATCT-AAGTGTGC-AGCTGGCGCTTCCTGGC-AGCAAAAGGTTGTCTGGGCCTCTGGCTCTGC-CCTCCAGCATCTG-CCTGGGGCTTGTCTGAAGCC--ATCAAGGAGGCACTTCAGAACCACGAGGAAAACCA--CTGATTTGCATATCGTCTTCCACTCAGAGC----------------T------GTCACCTGCGT--------TGCT-GG-CTCACCTGGCTCCGGTGGGCTGCGG--------------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16029641 285 +  16417988 CGCATCCAAGGAAAACACCCTTGTCGTCACA--ACAAA-ACAACAGACGCATGAGACATTGATTTTTGAAAATATTATTCCTGAAATCT-AAGTGTGC-AGCTGGCGTTTCCTGGC-AGCAAAAGGCTGTCTGGGCCTCTGGCTCTGCGGCTCCGGCGTCTG-CATGGGGCTTGGCTGAAGCC--ATCAAGGAAGCACTTAGGAACCACGAGGAAAGCAG-CCTGATTTGCATATCGTCTTCCACTCAAAGC----------------T------GTCACCTGTGC--------CGCT-GG-CTCACCTGGCTCAGGTGGGCTGCGG--------------------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      115634 287 +    298490 CGCATCCAAGGAAAACACCCTCGTCATCACA-GACAAA-ACAACAGATGCATGAGACATTGATTTTTGAAAATATTATTCCCAAAATCTAAAGTGTAC-AGCTGGCATTTCCTGGC-AGCAAAAGGCTGGCTGGGCCTCTGGCTCTGCGGCACCGGCTTCTG-CCTGGGGCTTGGCTGAAGCC--ATCAAGGAAGCACTTCGGGACCACGAGGAAAGTGG-CCTGATTTGCATATCGTCTTCCACTCAAAGC----------------T------ATCACCTGCGC--------CGCT-GG-CTCACCTTGCTCGGGTGGGCTGCGG--------------------
i cebCap1.NW_016108158v1   C 0 I 80
s aotNan1.NW_018503740v1    25443049 278 -  25620257 CACGTCCAAGGAAAACACCCTCGTCGTCACA-GACAAA-ACAACAGATGCATGAGACATTGATTTTTGAAAATATTATTCCCGAAATCT-AAGTGTGC-AGCTGGCGTTTCCTGGC-AGCAAAAGGCCGTCTGGGCCTCTGGCTCCGCGGCTCCGGCGTCTG-CCTGGGGCTTGGC----------TCGCGGAAGCACTTCGGAACCACAAGGAAAGTGG-CCTGATTTGCATATCGTCTTCCGCTCAAAGC----------------T------GTCACCTGCGT--------CGCT-GG-CTCACCTTGCTCAGGTGGGCTGCGG--------------------
i aotNan1.NW_018503740v1   I 129 C 0
s otoGar3.GL873745           1897457 271 -   2165740 TATGTCCAAGGAAAACACCCTTGTT-TCACAAGCCGAC-CCAGTAGAAGCATGAAAGATTGA-TTTTGAAAATATTGTTCCTGAAACCT-AAACTTGC-AGCTGGTGCTTCCTGGC-AGC-AA----------------CATATCCACA-----------------AGGGCTTGGCTGGAGCC-TGTCCAGGAAGCATTTTTGAATAGGGAGGAAAAACTTTTGACTTTACATATCACCTTCCACCCCAAATCTCAGAGGTGACTCAGT------GGCCCCCATGT--------CCCTAGG-CTTGCTCTGCCCAGGTGGGATGCCG--------------------
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11736812 305 +  42124431 CATACCCAAGGAAAACACCTTTGTTTTAACA-GGCAGACACGGCAAGAGTGGCACAGATTGATTTTTGAAAATATTATTTCTGAAACCT-AAACTTGC-AGCTGGCGTTTGCTGGC-AGC------------------TTAGAGTCAGGACACCGGCGTCCACCCTGGGGTTTGGCCGAAGCC-AGTCAAGGAAGCACATTTGAACCGGGAGGAAAAAC--CTGAATTTACATATTGTCCTCTACCCCAAAT----------------CTCAAAAGCCAGCTGGGTGGTCTTTATGCT-GGTCCTGGCCTGCCCCAGAGGGCTGCCAGGGGCAGGGGCAGAGGCAGG
i canFam3.chr34            C 0 C 0

a score=101744.000000
s hg38.chr5_KI270793v1_alt     92618 13 +    126136 GTGGGGA-----GTGGCC-----------------------------
s panTro5.chr5             181359094 13 - 181907262 GTGGGGA-----GTGGCC-----------------------------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078017 13 - 183735486 GTGGGGA-----GTGGCC-----------------------------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171787 13 +    698298 GTGGGGA-----GTGGCC-----------------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589388 13 - 121039945 GTGGGGA-----GTGGCC-----------------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544730 13 - 180051392 GTGGGGA-----GTGGCC-----------------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181277882 13 - 181584905 GTGGGGA-----GTGGCC-----------------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283957 13 -   1764207 GTGGGGA-----GTGGCC-----------------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289150 13 -  16742782 GTGGGGA-----GTGGCC-----------------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591355 13 -  91010382 GTGGGGA-----GTGGCC-----------------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186933 13 -    438239 GTGGGGA-----GTGGCC-----------------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216665 13 -    514179 GTGGGGA-----GTGGCC-----------------------------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875677 13 + 204313951 GCCGGGA-----GTGGCC-----------------------------
i calJac3.chr2             C 0 I 18
s saiBol1.JH378155          16029926 13 +  16417988 GCCGGGA-----GTGGCC-----------------------------
i saiBol1.JH378155         C 0 I 18
s aotNan1.NW_018503740v1    25443327 13 -  25620257 GCCGGGA-----GTGGCC-----------------------------
i aotNan1.NW_018503740v1   C 0 I 68
s otoGar3.GL873745           1897729 17 -   2165740 GTGGGGGC-CTCATGCCC-----------------------------
i otoGar3.GL873745         I 1 I 9
s canFam3.chr34             11737117 47 +  42124431 GCAGGGGCTCCCGTGGCTCGCACACCTTCCACGCCCTCTCCAGGGCC
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      115921 80 +    298490 I

a score=336829.000000
s hg38.chr5_KI270793v1_alt     92631 50 +    126136 ACCCAACGGTGACTCAGAGCACTCCAGCATCCTGACTCTTGCTCCGTATT
s panTro5.chr5             181359107 50 - 181907262 ACCCAACGGTGACTCAGAGCACTCCAGCATCCTGACTCTTGCTCCGTATT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078030 50 - 183735486 ATCCAACGGTGACTCAGAGCACTCCAGCATCCTGACTCTTGCTCCGTATT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171800 50 +    698298 ACTCAACGGTGACTCAGAGCACTCCAGCATCCTGACTCTTGCTCCGTATT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589401 50 - 121039945 ACTAAACGGTGACTCATAGCACTCCAGCATCCTGATTCTTGCTCCGTATT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544743 50 - 180051392 ACTAAACGGTGACTCAGAACACTCCAGCGTACTGATTCTTGCTCCGTATT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181277895 50 - 181584905 ACTAAACGGTGACTCAGAACACTCCAGTGTACTGATTCTTGCTCCGTATT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      283970 50 -   1764207 ACTAAACGGTGACTCAGAACACTCCAGTGTACTGATTCTTGCTCCGTATC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289163 50 -  16742782 ACTAAACGGTGACTCAGAACACTCCAGTATACTGATTCTTGCTCCGTATT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591368 50 -  91010382 ACTAAACGGTGACTCAGAGCACTCTGGTATACTGATTCTTGCTCCGTATT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186946 50 -    438239 ACTAAACGGTGACTCAGAACACTCCAGTATACTGATTCTTGCTCCGTATT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216678 50 -    514179 AGCAAATGGTGACTCAGAGCACTCCAGTATACTGATTCTTGCTCCGTATT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875708 50 + 204313951 ACTAAACAATGACTCAGAAAGTGCCGGCGCCCTTATTCTTCCTCCATGTG
i calJac3.chr2             I 18 C 0
s saiBol1.JH378155          16029957 50 +  16417988 ACTAAATGATGACTCAGAAAATGCCGGCGTCCTTATTCTCCCTCCACGTG
i saiBol1.JH378155         I 18 C 0
s otoGar3.GL873745           1897755 33 -   2165740 CCATAAGGATGACTCAGGCCGCTCCAGCCTCCC-----------------
i otoGar3.GL873745         I 9 C 0
s canFam3.chr34             11737164 50 +  42124431 ACTAAAGCGTAACTCAGCTGGTGCTGCATTCCCCATTCTTCCTTAGGATT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25443340 68 -  25620257 I
e cebCap1.NW_016108158v1      115921 80 +    298490 I

a score=606362.000000
s hg38.chr5_KI270793v1_alt     92681 60 +    126136 ACATCCCATGAACCTGGTGGCTTCCTTTTCTGGGAGGA--AGTTAGGGTTCACGTCC------ATCAC
s panTro5.chr5             181359157 60 - 181907262 ACATCCCATGAACCTGGTGGCTTCCTTTTCTGGGAGGA--AGTCAGGGTTCACATCC------ATCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078080 60 - 183735486 ACATCCCATGAACCTGGTGGCTTGCTTTTCTGGGAGGA--AGTCAGGGTTCACGTCC------ATCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171850 49 +    698298 ACATCCCATGAACCTGGTGGCTTCCTTTTCTGGGAAGA--AGTCAGGGTT-----------------T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589451 62 - 121039945 ACATCCCGTAGACCTGGCGGCTTCCTTTTCCAGGAAGAAGAGTCAGGGTTCACGTTC------ATCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544793 62 - 180051392 ACACCCCATAAACCTGGCGGCTTCCTTTTCTGGGAAGAAGAGTCAGGGTTCACGTCC------ACCAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181277945 62 - 181584905 ACACCCCATAAACCTGGCGGCTTCCTTTTCTGGGAAGAAGAGTCAGGGTTCACGTCC------ACCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284020 62 -   1764207 ACACCCCATAAACCTGGCGGCTTCCTTTTCTGGGAAGAAGAGTCAGGGTTCACGTCC------ACCAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289213 62 -  16742782 ACACCCCATAAACCTGGCGGCTTCCTTTTCTGGGAAGAAGAGTCAGGGTTCACGTCC------ACCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591418 62 -  91010382 ATACCCCATAAACCTGGCGGCTTCCTTTTCTGGGAAGAAGAGTCAGGGTTCACGTCC------GCCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      186996 62 -    438239 ACACCCCATAAACCTGGCGGCTTCCTTTTCTGGGAAGAAGAGTCAGGGTTCACGTCT------GCCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216728 59 -    514179 ACACCCCATAAACCTGGCGGCTTCCCTTTCCGGGAAGAAGAGTCAGGGTTCATGCCC------AC---
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875758 60 + 204313951 ACACCCCATAAACCTGGCGGCTTCCTTTTCTGGGAAGG--AATCAGGGTTCCCGTCC------ACCAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16030007 66 +  16417988 ACACCCCATAAACCTGGCAGCTTCCTTTTCTGGGAAGA--AATCAGGGTTCCCGTCCACCACAACCAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      116001 60 +    298490 ACACCCCATGAACCTGGCAGCTTCCTTTTCTGGGAAGA--AATCAGGGTTCCCGTCC------ACCAC
i cebCap1.NW_016108158v1   I 80 I 350
s aotNan1.NW_018503740v1    25443408 60 -  25620257 ACACCCCATAAACCTGGCGGCTTCCTTTTCTGGGAAGA--AATCAGGGTTCCCGTCC------ACCAC
i aotNan1.NW_018503740v1   I 68 C 0
s otoGar3.GL873745           1897788 52 -   2165740 ----CCAATAAACCTGGTGACTCCTGGTTCTGGGAAAA--AGTTGTGGTTTATGTCC------A----
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11737214 60 +  42124431 ACACCCCATAAACCTGGCAGCTCCTGTGTCTGGGAAGA--AGTCCTGGTTTATGGCC------AGTGT
i canFam3.chr34            C 0 C 0

a score=240542.000000
s hg38.chr5_KI270793v1_alt     92741 35 +    126136 AAGAC---AAGTCTCCCTCACAGCCCGATTGACCCCAG-----
s panTro5.chr5             181359217 35 - 181907262 AAGAC---AAGTCTCCCTCACAGCCCGATTGACCCCAG-----
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078140 35 - 183735486 AAGAC---AAGTCTCCCTCACAGCCCGATTGACCCCAG-----
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171899 35 +    698298 AAGAC---AAGTCTCCCTCACAGCCCGATAGACCTCAG-----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589513 35 - 121039945 AAGAC---AAGTCTCCCTCACAGCCCGATTGACCCCAG-----
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544855 35 - 180051392 CAGAC---AAGTCTCCCTCACAGCCCGATTGACTCTAG-----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278007 35 - 181584905 CAGAC---AAGTCTCCCTCACAGCCCGATTGACTCTAG-----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284082 35 -   1764207 CAGAC---AAGTCTCCCTCACAGCCCGATTGACTCTAG-----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289275 35 -  16742782 CAGAC---AAGTCTCCCTCACAGCCCGATTGACTCTAG-----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591480 35 -  91010382 CAGAC---AAGTCTCCCTCACAGCCCGATTGACTCTAA-----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187058 35 -    438239 CAGAC---AAGTCTCCCTCATAGCCTGATTGACTCTAG-----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216787 33 -    514179 --GAC---AAGTCTCCCTCACAGCCTGATTGACTCGAG-----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875818 34 + 204313951 -AACC---ACGCCTCCTTCACAGCCCTACTGACCACAG-----
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16030073 34 +  16417988 -AACC---ACGCCTCCTGCACAGCCCCACTGACCCCAG-----
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25443468 34 -  25620257 -GACC---ACGCCTCCCTCACAGCCCCACTGACCCCAG-----
i aotNan1.NW_018503740v1   C 0 I 193
s otoGar3.GL873745           1897840  7 -   2165740 ---------------------GGCCCAG---------------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11737274 41 +  42124431 --GGCTCTATGTCTCCTTTACAGTGTAAGTGACCTCGGCCCAG
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      116061 350 +    298490 I

a score=948930.000000
s hg38.chr5_KI270793v1_alt     92776 217 +    126136 GACAGCCTG----TGCCTGGGGGAGCACGTTGGGG-GGCTATGGGCCCCATCCTACAAGGTCTCTGTGGGGTGGGC-----------GGGGGGTAGCACATGAAG--GG--------GCTGCGGGCTCGGTCCTG-------------------------CAAGGTCTTGGTGGGGTGGGCGG---GG---TGGGGCCCCAGCGATGGCATCCGGGACG----------------------------GTGCAGTC--------------------TGGGAGGG-GCAG-------------------------CGGGACCTCGG-------------------------------AAGGGGGCCTTGGCCGCAGGT---------GCC
s panTro5.chr5             181359252 218 - 181907262 GACAGCCTG----TGCCTGGGGTAGCGCGTTGGGG-GGCCACGGGCCCTATCCTACAAGGTCTCTGTGGGGTGGGC-----------GGGGGGTAGCGCATGAAG--GG--------GCTGCGGACTCGGTCCTG-------------------------CAAGGTCTCGGTGGGGTGGGCGG---GGG--TGGGGCCCCAGCGATGGCATCCGGGACG----------------------------GTGCAGTC--------------------TGGGAGGG-GCAG-------------------------CAGGACCTCGG-------------------------------AAGGGGGCCTTGGCCACAGGT---------GCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078175 217 - 183735486 GACAGCCTG----TGCCTGGGGGAGCGCGTTGGGG-GGCCACGGGCCCTATCCTACAAGGTCTCTGTGGGGTGGGC------------GGGGGTAGCGCATGAAG--GG--------GCTGCGGGCTCGGTCCTG-------------------------CAAGGTCTCGGTGGGGTGGGCGG---GGG--TGGGGCCCCAGCGATGGCATCCGGGATG----------------------------GTGCAGTC--------------------TGGGAGGG-GCAG-------------------------CGGGACCTCGG-------------------------------AAGGGGGCCTTGGCCGCAGGT---------GCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      171934 157 +    698298 GACAGCCTG----TGCCTGGGG-AGCGTGTT-GGG-GGCTACGGGCCCCAT--------------------------------------------------------------------------------CCTG-------------------------CAAGGTCTCGGTGGGGTGGGCGG---GGG--TGGGGCCCCAGCGATGGCATCCGGGACG----------------------------GTGCAGTC--------------------TGGGAGGG-GCAG-------------------------CGGGACCTCGG-------------------------------AAGGGGGCCTTGGCCGCAGGT---------GCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589548 216 - 121039945 GACAGCCTG----TGCCTGGGGGAGCGCGTT-GGG-GGCTACGGGCCCCATCCTGCAAGGTCTCCGTGGGGTGGGC-----------GGGGGGCAGCGCATGAAG--GG--------GCTGCGGGCTCGGTCCTG-------------------------CAAGTTCTTGGTGGGGTGGGCGG---GG---AGGGGGCCTAGCGATGGCATCCAGGACA----------------------------GTGCAGTC--------------------TGGGAGGG-ACAG-------------------------CGGGACCTCGG-------------------------------AAGGGGGCCTTGGCCGCAGGC---------GCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179544890 210 - 180051392 GACAGCCTG----TGCCTGGGGGAGTGTGTGGTGG-GGCTAC-GGCTGCGTCCTGCAAGGTCTCCGTGGGGTGGGCAGAA-------GGGGGGGAGCACGTGAGG--GG--------GCTGCGGGCTCGGTCCT------------------------------------GTGGGGTGGGCGG---TGG--TGGGGCCCCAGCGATGGCATCCAGGACG----------------------------GTGCAGTC--------------------TGGGAGGG-GCAG-------------------------CGGGACTTGGG-------------------------------AAGGGGGCCTTGGCTGCAGCC---------GCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278042 209 - 181584905 GACAGCCTG----TGCCTGGGGGAGTGTGTGGTGG-GGCTAC-GGCTGCGTCCTGCAAGGTCTCCGTGGGGTGGGCAGAA--------GGGGGGAGCACGTGAGG--GG--------GCTGCGGGCTCGGTCCT------------------------------------GTGGGGTGGGCGG---TGG--TGGGGCCCCAGCGATGGCATCCAGGACG----------------------------GTGCAGTC--------------------TGGGAGGG-GCAG-------------------------CGGGACTTGGG-------------------------------AAGGGGGCCTTGGCTGCAGCC---------GCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284117 210 -   1764207 GACAGCCTG----TGCCTGGGGGAGTGTGTGGTGG-GGCTAC-GGCTGCGTCCTGCAAGGTCTCCGTGGGGTGGGCAGAA-------GGGGGGGAGCACGTGAGG--GG--------GCTGCGGGCTCGGTCCT------------------------------------GTGGGGTGGGCGG---TGG--TGGGGCCCCAGCGATGGCATCCAGGACG----------------------------GTGCAGTC--------------------TGGGAGGG-GCAG-------------------------CGGGACTTGGG-------------------------------AAGGGGGCCTTGGCTGCAGCC---------GCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289310 209 -  16742782 GACAGCCTG----TGCCTGGGGGAGTGTGTGGTGG-GGCTAC-GGCTGTGTCCTGCAAGGTCTCCGCGGGGTGGGCAGAG--------GGGAGGAGCACATGAGG--GG--------GCTGCGGGCTCGGTCCT------------------------------------GTGGGGTGGGCGG---CGG--TGGGGCCCCAGCGATGGCATCCAGGACG----------------------------GTGCAGTC--------------------TGGGAGGG-GCAG-------------------------TGGGACTTGGG-------------------------------AAGGGGGCCTTGGCTGCAGCC---------GCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591515 207 -  91010382 GACAGCCTT----TGCCTGGGGGAGTGTGTGGTGG-GGCTAC-GGCTGCGTCCTGCAAGGTCTCCGTGGGGTGGGCAG---------GGGGGGGAGCACATGAGG--GG--------GCTGCGGGCTCGGTCCT------------------------------------GTGGGGTGGGCAG---GGG--TGGGGCCCCAGCGATGGCATCCAGGACG----------------------------GTGCAGTC--------------------TGGGAGGG-GCAG-------------------------C-GGACTTCGG-------------------------------AAGGGGGCCTTGGCTGCAGCC---------GCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187093 210 -    438239 GACAGCCTG----TGCCTGGGGGAGTGTGTGGTGG-GGCTAC-GGCTGCGTCCTGCAAGGTCTCCGTGGGATCGGCAGAA-------GGAGGGGAGCACATGAGG--GG--------GCTGCGGGCTCAGTCCT------------------------------------GTGGGGTGGGCGG---CGG--TGGGGCCCCAGCGATGGCATCCAGGACG----------------------------GTGCAGTC--------------------TGGGAGGG-GCAG-------------------------TGGGACTTGGG-------------------------------AAGGGGGCCTTGGCTGCAGCC---------GCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      216820 208 -    514179 GACAGCCTG----TGCCTGGGGGAGTGCGTGGTGG-GGCTAC-AGCTGCGTCCTGCAAGCTCTCCGTGGGGTGGGCGG---------GGCGGGGAGCGCATGAGG--GA--------GCTGTGGGCTCGGTCCT------------------------------------GTGGGGTGGGCGG---GGG--TGGGGCCCCAGCGACGGCGTCCAGGACG----------------------------GTGCAGCC--------------------TGGGAAGG-GCAC-------------------------CAGGACTTCGG-------------------------------AAGGGGGCCTTGGCTGCAGCC---------GCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203875852 194 + 204313951 TGCAGCCGGGGCTGGCCCAGGACGACTTGTGCCGG-GGGTGG-GGAAGGGTGC--CTGGGCGGCTATGGGCT-------------------------------------------------------CTGTTCTG-------------------------TAAGGTCTC-CTGGGGTGGGCTG---GGG--TGGGGCCCCAGCCACAGCATCCAGGGCA----------------------------GAGCAGGG--------------------TGGGAGGGCACGG-------------------------CAGGACCGAGG-------------------------------AAGGGGCCGTTGGCTGCAGCCAAAGAGCATGCC
i calJac3.chr2             C 0 I 14
s saiBol1.JH378155          16030107 178 +  16417988 TGCAGCCAGGGCTGGCCCAGGACAACTTGTGCCGG-TGG----------------------------GGGGTGGGT---------------------GCATG--G--CG--------GCTCTGGGCCCCTTTCTG-------------------------CAAGGTCTC-CTGGGGTGGGCTG---GGG--TGGGACCACAGCCACAGCATCCAGGGCA----------------------------GAGCAGGG--------------------TGGGAGGGCACGG-------------------------CAGGGCCCCAG-------------------------------AGGGGGCC-TTGGCTGCA------------GCC
i saiBol1.JH378155         C 0 I 10
s otoGar3.GL873745           1897847 335 -   2165740 GACAGCCAG----CATCCATGGCAA-ATGTACTAGCAGCCATGGGATATGTTCTGCAAGGTCTCT----GGTGGACAGAATAGAGTAGGGTGCCAAGACCTGAGG--GGAGACCCTCGCTGTGGCCCAGCACCTGCACCCATGAGACTTGGAGTGCTTTTCAGGAGCTGCAGGGAGTGGGCTTTCCTGG--TGGTCAACCAACCACAGCA--CGGAAGG----------------------------GTATGACCCTCCCCACTGCCCAGGGGCATGGGAGCT-GCTGGTGATGGCTCCACTGCCATCAGTCACAGAAGCTGGGATGCAGCTGCCATCCTGGTCCCTATTTACACAAGGGGACAGTGATCGCAGGC---------CCT
i otoGar3.GL873745         C 0 I 11
s canFam3.chr34             11737315 216 +  42124431 GACAGCCCG----T----------------------AGCCAC-AGGTGCCC---------TTGCTGCCGGGTG--------------CTGGGTGAGTACTTGAGGCCAG--------GCTGTGGGTTCTGCCCTA-------------------------CAAGGCCT--CAGGAAAAGCCTG---TAACCTGGGGCTCCGGGGGCGA-ATCCAGGATGTCAGAAGTTGTCTCTAGCAGTGGGGGGAATGGAGGC--------------------TGAGAGGG-GGAA-------------------------TAGAGTCCAGG-------------------------------AGGGGCCCCTGGGGTCCAGTCTGA------GCC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25443502 193 -  25620257 I
e cebCap1.NW_016108158v1      116061 350 +    298490 I

a score=240107.000000
s hg38.chr5_KI270793v1_alt     92993  30 +    126136 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
s panTro5.chr5             181359470  30 - 181907262 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078392  30 - 183735486 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172091  30 +    698298 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589764  30 - 121039945 -----CCCGGAG--------------------------------------------C-----ACGTTTCAGG--------------------------CCCCACAGTCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545100  30 - 180051392 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278251  30 - 181584905 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284327  30 -   1764207 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289519  30 -  16742782 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591722  30 -  91010382 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187303  30 -    438239 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217028  30 -    514179 -----CCCGGAG--------------------------------------------C-----ACATTTCAGG--------------------------CCCCACAGTCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876060  30 + 204313951 -----CCCAGAG--------------------------------------------G-----GCCTTTCAGG--------------------------GCCCCAAGTCCA
i calJac3.chr2             I 14 C 0
s saiBol1.JH378155          16030295  30 +  16417988 -----CCCAGAG--------------------------------------------G-----GCGTTTCAGG--------------------------ACCCCAAGTCCA
i saiBol1.JH378155         I 10 C 0
s aotNan1.NW_018503740v1    25443695  30 -  25620257 -----CCCGGAG--------------------------------------------G-----GCATTTCAGG--------------------------GCCCCAAGTCCA
i aotNan1.NW_018503740v1   I 193 C 0
s otoGar3.GL873745           1898193 100 -   2165740 -----TCCAGGGCATCCTCAGCTCATCCTCCCTCAATCCCCCTTTCATTCTGGTTTC-----ACATTTGGGGAAGCTGAGACAAAAAAAGCCAACTATTTCCACAGGCCA
i otoGar3.GL873745         I 11 C 0
s canFam3.chr34             11737531  40 +  42124431 TCCTTCCTGAAA--------------------------------------------CTGGTGGTGGCCACGG--------------------------CCCCACAGCCCA
i canFam3.chr34            C 0 I 299
e cebCap1.NW_016108158v1      116061 350 +    298490 I

a score=910858.000000
s hg38.chr5_KI270793v1_alt     93023 128 +    126136 CA-------------CCTCTCACACAAGCCCCCCAAGCACGGCGAGCGGGCAGCACGGGGCTCTGTGTGCACACGGCAGA-CTGAGCACTGCTGGGCGCTGCC-AGGGTCACGTTG--------------------------CCCACA--------------GGGGAGCACAGACACCCACG-G
s panTro5.chr5             181359500 128 - 181907262 CA-------------CCTCTCACACAAGCCCCCCAAGCACGGCGAGCGGGCAGCACGGGGCTCTGTGTGCACACGGCAAA-CTGAGCACTGCTGGGCGCTGCC-AGGGTCACGTTG--------------------------CCCACA--------------GGGGAGCACAGACACCCACG-G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078422 128 - 183735486 CA-------------CCTCTCACACAAGCCCCCCAAGCACGGCAAGTGGGCAGCACGGGGCTCTGTGTGCACACGGCAGA-CTGAGCACTGCTGGGCGCTGCC-AGGGTCACGTTG--------------------------CCCACA--------------GGGGAGCACAGACACCCACG-G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172121 128 +    698298 CA-------------CCTCTCACACAAGCCCCCCATGCACGGCGAGCGGGCAGCACGGGGCTCTGTGTGCACACGGCAGA-CTGAGCACTGCTGGGCGCTGCC-AGGGTCACATTG--------------------------CCCACA--------------GGGGAGCACAGACACCCATG-G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589794 128 - 121039945 CA-------------CCTCTCACACAAGCCCCCCACGCGCGGTGAGCGGGCAGCACAGGGCTCTGTGTGCACACGGCAGA-CTGAGCACTGCTGGGCGCTGCC-AGGGTCACGGAG--------------------------CCCACG--------------GGGGAGCACAGATGCCCACA-A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545130 129 - 180051392 CA-------------CCTCTCACACAAGTCCCCCATGCGAGGTGAGCGGGAAGCACAGGGCTCTGTGTGCACACGGCAGACCTGAGCATTGCTGGGTGCGGCC-AGGGTCACGGAG--------------------------CCCACA--------------GGGGAGCACAGATGCCTTCG-G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278281 129 - 181584905 CA-------------CCTCTCACACAAGTCCCCCATGCGAGGTGAGCGGGAAGCACAGGGCTCTGTGTGCACACGGCAGACCTGAGCATTGCTGGGTGCGGCC-AGGGTCACGGAG--------------------------CCCACA--------------GGGGAGCACAGATGCCTTCG-G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284357 129 -   1764207 CA-------------CCTCTCACACAAGTCCCCCATGCGAGGTGAGCGGGAAGCACAGGGCTCTGTGTGCACACGGCAGACCTGAGCATTGCTGGGTGCGGCC-AGGGTCACGGAG--------------------------CCCACA--------------GGGGAGCACAGATGCCTTCG-G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289549 128 -  16742782 CA-------------CCTCTCACGCAAGTCCCCCATGCGAGGTGAGCGGGAAGCACAGGGCTCTGTGTGCACACGGCAGACCTGAGCATTGCTGGGTGCTGCC-AGGGTCACAGAG--------------------------CCCACA---------------GGGAGCACAGATGCCTTCG-G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591752 129 -  91010382 CA-------------CCTCTCACGCAAGTCCCCCATGCGAGGTGAGCGGGAAGCACAGGGCTCTGTGTGCACACGGCAGACCTGAGGATTGCTGGGTGCTGCC-GGGGTCACGGAG--------------------------CCCACA--------------GGGGAGCACAGATGCCTTCG-G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187333 128 -    438239 CA-------------CCTCTCACGCAAGTCCCCCATGCGAGGTGAGCGGGAAGCACAGGGCTCTGTGTGCACACGGCAGACCTGAGCATTGCTGGGTGCTGCC-AGGGTCACGAAG--------------------------CCCACA---------------GGGAGCACAGATGCCTTCG-G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217058 129 -    514179 CA-------------CCTCTCACACAAGTCCCCCATGCGAGGTGAGCGGGAAGCACGGGGCTCTATGTGCACACGGCAGACCTGAGCACTGCTGCGTGCTGCC-AGGGTCATGGAG--------------------------CCCACA--------------GGGGAGCACAGACGCCTTCG-G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876090 127 + 204313951 CA-------------GCTCTCACCCAAGT-CACCACGCTTGGTGAGCAGGAAGCACAGGGCTCTGTGTGTCGACCGCTGACCTGAGCGCCACTGGCCGCTGCC-AGGGTCATGGAA--------------------------CCCACA--------------GGGGAGGGCAGATACCCTCA--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16030325 106 +  16417988 CA-------------GCTCTCACCCAAGT-CCCCACGCGTGGTGAGCAGGAAGCACAGGGCTCCGTGTGCCCACGGCTGA---------------------CC-AGGGTCATGGAG--------------------------CCCACG--------------GAGGAGTGCAGATGCCCTCA--
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25443725 128 -  25620257 CA-------------GCTCTCACCCAAGT-CCCCACGCGTGGTGAGCAGGAAGCACAGGGCTCCGTGTGCCCACGGCTGACCTGAGCGCCGCTGGCCACTGCC-AGGGTCATGGAG--------------------------CCCACG--------------GGGGAGTGCAGATGCCCTCAG-
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1898293 173 -   2165740 AACAGTACTCCATGCCCTTTCACAGAAGTGCCTGTGTCCCAGCAAGCAGTAAATG-AGGTCACCATGTGCAC-CTGCATACCTCAGTGCCCCCAGGTGTTGCTGAAGGTCACAGGGAGAGTGGGCCTGTCTAGAGAGTTCATCCTATGGGTCTGTGATGGATGGGGTGCACCGGG---------
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      116061 350 +    298490 I
e canFam3.chr34             11737571 299 +  42124431 I

a score=827497.000000
s hg38.chr5_KI270793v1_alt     93151  91 +    126136 GACCGAGCGC---CGGCT---GCAGGGCGCGTGCCAGCGGCCCGCAATG---ATGTCCGA--------------CTGCAAAGG-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
s panTro5.chr5             181359628  91 - 181907262 GACCAAGCGC---CGGCT---GCAGGGCGCGTGCCAGCGGCCCGCAATG---ATGTCCGA--------------CTGCAAAGG-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078550  91 - 183735486 GACTGAGCCC---CGGCT---GCAGGGCGCGTGCCAGCGGCCCGCAATG---ATGTCCGA--------------CTGCAAAGG-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172249  91 +    698298 GACCGAGCGC---CGGCT---GCAGGGCGCGTGCCAGCGGCCCGCAATG---ATGTCCGA--------------CTGCAAAGG-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120589922  91 - 121039945 GACTGAGCGC---CGGCT---GCAGGGCGCATGCCAGCAGCCCGCAATG---ATGTCCAA--------------CTGCAAAGG-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545259  91 - 180051392 GACCGAGCGC---CGGCT---GCAGGGTGTGTGCCAGCGGCCCACAGTG---ATGTCCAA--------------CTGCAAAGA-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278410  91 - 181584905 GACCGAGCGC---CGGCT---GCAGGGTGTGTGCCAGCGGCCCACAGTG---ATGTCCAA--------------CTGCAAAGA-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284486  91 -   1764207 GACCGAGCGC---CGGCT---GCAGGGTGTGTGCCAGCGGCCCACAGTG---ATGTCCAA--------------CTGCAAAGA-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289677  91 -  16742782 GACCGAGCGC---CGGCT---GCAGGGTGTGTGCCAGCGGCCCACAGTG---ATGTCCAA--------------CTGCAAAGG-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591881  91 -  91010382 GACCGAGCGC---CGGCT---GCAGGGTGTGTGCCAACGGCCCACAATG---ATGTCCAA--------------CTGCAAAGG-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187461  91 -    438239 GACCGAGCAC---CGGCT---GCAGGGTGTGTGCCAGCGGCCCACAGTG---ATGTCCAA--------------CTGCAAAGG-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217187  91 -    514179 GACCGAGCAC---CAGCT---GCAGGGTGTGTGCCAGCGGCCCACAGTG---ATGTCCAA--------------CTGCAAAGG-----------------------------------------------GACAGGAGGCCTCAGGCTCACTGGCCTCTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876217  91 + 204313951 GACTGAGCAC---CCGCA---GCAGGGCGCCTGCCAGTGGACCGAGATG---ACGTCCAG--------------CTGCAAAGG-----------------------------------------------GATGGGAGGACTCAGGCCCACTGGCGTCTGG
i calJac3.chr2             C 0 I 28
s saiBol1.JH378155          16030431  94 +  16417988 GATCGAGCACCCGCCGCA---GCAGGGCGCCTGCCTCCGGACCGAGACG---ACGTCCAA--------------CTGCAAAGG-----------------------------------------------GTTGGGAGGCCTCAGGCCCACTGGCCTCTAG
i saiBol1.JH378155         C 0 I 28
s cebCap1.NW_016108158v1      116411  91 +    298490 GACCGAGCAC---CCGCA---GCAGGGCGCCTGCCAGCGGACCGAGATG---ACGTCCAA--------------CTGCAAAGG-----------------------------------------------GTTGGGAGGCCTCAGGCCCACTGGCCTCTGG
i cebCap1.NW_016108158v1   I 350 I 29
s aotNan1.NW_018503740v1    25443853  84 -  25620257 -ACCGAGCAC---CTGCA---GCAGGGTGCCTGCCAGCGGACCGAGATG---ATGTCCAA--------------CTGCAAAGG-----------------------------------------------GATGGGAGGCC-AAGGCCAGC-----CCTGG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1898466 154 -   2165740 GACCATGTGG---TGGCTTTGTCAGGGAA---GCCAGAGGACC-CTGTGTGCATGTCCAAGGAAAACACCCTTGCTTCACAAGTTAGCCAGCTTGTGAGCACCCTTGTTTCATAAGCCAACCAGCTGTTCAGCAACAGGACTCAGACCTGCTGACCTTTGG
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11737571 299 +  42124431 I

a score=4954.000000
s hg38.chr5_KI270793v1_alt     93242 2 +    126136 GT
s panTro5.chr5             181359719 2 - 181907262 GT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078641 2 - 183735486 GT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172340 2 +    698298 GT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590013 2 - 121039945 GT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545350 2 - 180051392 GT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278501 2 - 181584905 GT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284577 2 -   1764207 GT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289768 2 -  16742782 GT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591972 2 -  91010382 GT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187552 2 -    438239 GT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217278 2 -    514179 GT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876336 1 + 204313951 G-
i calJac3.chr2             I 28 C 0
s saiBol1.JH378155          16030553 1 +  16417988 G-
i saiBol1.JH378155         I 28 C 0
s otoGar3.GL873745           1898620 2 -   2165740 GC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25443937 0 -  25620257 C
e cebCap1.NW_016108158v1      116502 29 +    298490 I
e canFam3.chr34             11737571 299 +  42124431 I

a score=443394.000000
s hg38.chr5_KI270793v1_alt     93244 48 +    126136 ------------------TCCCCACAACGACCC---------CCAAC-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
s panTro5.chr5             181359721 48 - 181907262 ------------------TCCCCACAACGACCC---------CCAAC-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078643 48 - 183735486 ------------------TCCCCACAACGACCC---------CCAAC-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172342 48 +    698298 ------------------TCCCCACAACGACCC---------CCAAC-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590015 49 - 121039945 ------------------TCCCCACAACGACCC---------CCAAAGGGGG--AGACCTCTA-GGTTCTCAACTGGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545352 48 - 180051392 ------------------TCTCCACAACGACCC---------CCAAG-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278503 48 - 181584905 ------------------TCTCCACAACGACCC---------CCAAG-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284579 48 -   1764207 ------------------TCTCCACAACGACCC---------CCAAG-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289770 48 -  16742782 ------------------TCTCCACAACGACCC---------CCAAG-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90591974 48 -  91010382 ------------------TTTCCACAACGACCC---------CCAAG-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187554 48 -    438239 ------------------TCTCCACAACGACCC---------CCAAG-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217280 48 -    514179 ------------------TCTCCACAACGACCC---------CCAAA-GGGG--AGGCCTCTA-GGTTCTCAACTGGGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876337 46 + 204313951 ------------------TCTCCACAACGACCC---------CCGAG-GGG----GGCCTCTA-GGTTCTCCACTGGGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16030554 46 +  16417988 ------------------TCCCCACAACGGCCC---------CCGAG-GGG----GGCTTCTA-GGTTCTCGATGGGGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      116531 46 +    298490 ------------------TCCCCACAACGACCC---------CCGAG-GGG----GCCCTCTA-GGTTCTCGACTGGAA
i cebCap1.NW_016108158v1   I 29 C 0
s aotNan1.NW_018503740v1    25443937 46 -  25620257 ------------------TCCCCACAACGACCC---------TCGAG-GGG----GGCCTCTA-GGTTCTTGACTAGGA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1898622 78 -   2165740 CCATGTGCAGCTTTGGGGTCAGCCCAGTGTCCCTAGGGATGACCAGG-CAGGCAAGGCCTCTGCAGTTCTCAGCTGGGA
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11737571 299 +  42124431 I

a score=424069.000000
s hg38.chr5_KI270793v1_alt     93292 46 +    126136 GGAGGGGTCCTGCCCCTG----------------------------GGGAGGCGGGGGCAAG---GGTGAGGTGAGG-
s panTro5.chr5             181359769 46 - 181907262 GGAGGGGTCCTGCCCCTG----------------------------GGGAAGCGGGGGCAAG---GGTGAGGTGAGG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078691 46 - 183735486 GGAGGGGTCCTGCCCCTG----------------------------GGGAGGCGGGGGCAAG---GGTGAGGTGAGG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172390 46 +    698298 GGAGGGTTCCTGCCCCTG----------------------------GGGAGGCCAGGGCAAG---GGTGAGGTGAGG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590064 46 - 121039945 GGAGGGCTCCTGCCCCTG----------------------------GGGAGGCCGGGGCAAG---CGTAAAGTGAGG-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545400 44 - 180051392 GGAGGGGTCCTGCCCCTG----------------------------GGGAGGCCGGGGCAAG---GGTGAAGTGA---
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278551 44 - 181584905 GGAGGGGTCCTGCCCCTG----------------------------GGGAGGCCGGGGCAAG---GGTGAAGTGA---
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284627 44 -   1764207 GGAGGGGTCCTGCCCCTG----------------------------GGGAGGCCGGGGCAAG---GGTGAAGTGA---
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289818 44 -  16742782 GGAGGGGTCCTGCCCCTG----------------------------GGGAGGCCGGGGCAAG---GGTGAAGTGA---
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592022 44 -  91010382 GGAGGGGTCCTGCCCCTG----------------------------GGGAGGCCGGAGCAAC---GGTGAAGTGA---
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187602 44 -    438239 GGAGGGGTCCTGCCCCTG----------------------------GGGAGGCCGGGGCAAG---GGTGAAGTGA---
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217328 44 -    514179 GGAGGGGTCCTGCCCCTG----------------------------GGGAGGCCGGGGCAAG---GGTGAAGTGA---
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876383 44 + 204313951 GGAGGTGTCCTGCCCCTG----------------------------GCGAGGCCGGGACAAG---GGTGAAGTGA---
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16030600 44 +  16417988 GGAGGTGTCCTGACCCTG----------------------------GCGAGGCCGGGACAAG---GGTGAAGTGA---
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1      116577 44 +    298490 GGAGGTGTCCTGCCCCTG----------------------------GTGAGGCTGGGACAAG---GGTGAAGTGA---
i cebCap1.NW_016108158v1   C 0 I 95
s aotNan1.NW_018503740v1    25443983 44 -  25620257 GGAGGTGTCCTGCCCCTG----------------------------GCGAGGCCGGGACGAG---GGTGAAGTGA---
i aotNan1.NW_018503740v1   C 0 I 210
s otoGar3.GL873745           1898700 37 -   2165740 GAAG----CCT--CCTTG----------------------------AGGAGACCTGGGTGAG---GGTG-TGTGA---
i otoGar3.GL873745         C 0 I 2
s canFam3.chr34             11737870 76 +  42124431 GGCGGGGAACAGCCCCTGCCTGAGCACTGTCCATGACCCCCCGAAAGCTATGCTGGGGTGAGCTTGGTGCAGTGG--G
i canFam3.chr34            I 299 C 0

a score=464203.000000
s hg38.chr5_KI270793v1_alt     93338  96 +    126136 GTCCCAGA------AGGCAGGGGCCGGGG----------------------GCAGGAGGCGGCTGA--AACCAGCGCTCTGCTGGGGTCCAGCCTGGTG--------------------GTCCCAGCTGTCCACACGGCCTTGCTG
s panTro5.chr5             181359815  96 - 181907262 GTCCCAGA------AGGCAGGGGCCGGGG----------------------GCAGGAGGTGGCTGA--AACCAGCGCTCTGCTGGGGTCCAGCCTGGTG--------------------GTCCCAGCTGTCCACATGGCCTTGCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078737  96 - 183735486 GTCCCAGA------AGGCAGGGGCCGGGG----------------------GCAGGAGGCGGCTGA--AACCAGCGCTCTGCTGGGGTCCAGCCTGGTG--------------------GTCCCAGCTGTCCACACAGCCTTGCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172436  96 +    698298 GTCCCAGA------AGGCAGGGGCCGGGG----------------------GCAGGAGGCGGCTGA--AACCAGCGCTCTGCTGGAGTCCAGCCTGGTG--------------------GTCCCAGCTGTCCACATGGCCTTGCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590110  94 - 121039945 GTCCCAGA------ATGCA-GGGCCGGGG----------------------GCAAGAGGTGGCTG---AACCAGCGCTCTGCTGGGGTCCAGCCTGGTG--------------------GTCCCAGCTGTCCACACAGCCTTGCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545444  82 - 180051392 --------------------GGGCCAGGG----------------------ATAGGAGGTGGCTGA--AACCAGCCCTCTGCTGGGGTCCAGCCTGGTG--------------------GTCCCGGCTGTCCACACAGCCTTGCCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278595  82 - 181584905 --------------------GGGCCAGGG----------------------ATAGGAGGTGGCTGA--AACCAGCCCTCTGCTGGGGTCCAGCCTGGTG--------------------GTCCCGGCTGTCCACACAGCCTTGCCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284671  82 -   1764207 --------------------GGGCCAGGG----------------------ATAGGAGGTGGCTGA--AACCAGCCCTCTGCTGGGGTCCAGCCTGGTG--------------------GTCCCGGCTGTCCACACAGCCTTGCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289862  82 -  16742782 --------------------GGGCCAGGG----------------------ACAGGAGGTGGCTGA--AACCAGCCCTCTGCTGAGGTCCAGCCTGGTG--------------------GTCCCGGCTGTCCACACAGCCTTGCCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592066  82 -  91010382 --------------------GGGCCAGGG----------------------ACAGGAGGTGGCTGA--AACCAGCCCTCTGCTGGGCTCCAGCCTGGTG--------------------GTCCCGGCTGTCCACACAGCCTTGCCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187646  82 -    438239 --------------------GGGCCAGGG----------------------ACAGGAGGTGGCTGA--AACCAGCCCTCTGCTGGGGTCCAGCCTGGTG--------------------GTCCCGGCTGTCCACACAGCCTTGCCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217372  82 -    514179 --------------------GGGCCAGGG----------------------ACAGGAGGTGGCTGA--AACCAGCCCTCTGCTCGGGTCCAGCCTGGTG--------------------GTCCCGGCTGTCCACACAGCCTTGCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876428  68 + 204313951 GTCCCAGAA----TGG----GGGGCAGGG-----------------------CAGGAGATGGCTGGGCATGCAGTACTCTGCTGGGGTGCAGCCTGGTC-----------------------------------------------
i calJac3.chr2             I 1 I 1
s saiBol1.JH378155          16030645 113 +  16417988 GACCCGGA------TG----GGGGCAGGG-----------------------CAGGAGGTGGCTGGGCACGCAGCACTCTGCGGGGGTGCGGCCTGTTCTCgccgtccacacagccgtccacacagccgtccacacagccTTGCCC
i saiBol1.JH378155         I 1 I 4
s otoGar3.GL873745           1898739  82 -   2165740 --------A--CTTTGGCTGGGAGGAGGGCAATGGGACATTTCCATGGCCTGCAGGAGGTGGCCAT---------GCCCTGCTGGGGTCCAGCCTCGCG----------------------------------CA-----------
i otoGar3.GL873745         I 2 C 0
s canFam3.chr34             11737946  91 +  42124431 ATCCCAGCAGTCCTCG----GTGCCAGGG----------------------ACAG--AGCAACTGTGCTTCCAGAACTCTGAGGAGGGCCCTGCAAATG--------------------G-------TGTATACACACTCGTGCTG
i canFam3.chr34            C 0 I 6
e aotNan1.NW_018503740v1    25444027 210 -  25620257 I
e cebCap1.NW_016108158v1      116621  95 +    298490 I

a score=331776.000000
s hg38.chr5_KI270793v1_alt     93434 58 +    126136 GTGGCTGGTTCAGGGCCCTCCCACAGGGAGATGTGGCTTGAAGACAAGGGCCC-----CGCC-C
s panTro5.chr5             181359911 58 - 181907262 GTGGCTGGTTCAGGGCCCTCCCACAGGGAGATGTGGCTTGAAGACAAGGGCCC-----CGCC-C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078833 58 - 183735486 GTGGCTGGTTCAGGGCCCTCCCACAGGGAGATGTGGCTTGAAGACAAGGGCCC-----CGCC-C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172532 58 +    698298 GTGGCTGGTTCAGGGCCCTCCCACAGGGAGATGTGGCTTGAAGACAAGGGTCC-----CGCC-C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590204 58 - 121039945 CTGGCTGGTTCAGGGCCCTCCCACAGGGAGATGTGCCTTGAAGACAAGGGCCC-----TGCC-C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545526 45 - 180051392 GTGGCTGGTT-------------CAGGGAGATGTGCCTTGAAGACAAGGGCCC-----CACC-C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278677 45 - 181584905 GTGGCTGGTT-------------CAGGGAGATGTGCCTTGAAGACAAGGGCCC-----CACC-C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284753 45 -   1764207 GTGGCTGGTT-------------CAGGGAGATGTGCCTTGAAGACGAGGGCCC-----CACC-C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289944 45 -  16742782 GTGGCTGGTT-------------CAGGGAGATGTGCCTTGAAGACAAGGGCCC-----CACC-C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592148 45 -  91010382 GTGGCTGGTT-------------CAGGGAGATGTGCCTTGAAGACAAGGGCCC-----CACC-C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187728 45 -    438239 GTGGCTGGTT-------------CAGGGAGATGTGCCTTGAAGACAAGGGCCC-----CACC-C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217454 58 -    514179 GTGGCTGGTTCAGGGCCCTCCCACAGGGAGATGTGCCTTGAAGACAAGGGCCC-----CACC-C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876497 57 + 204313951 GTGGCTGCTTCAGGACCCTAATGCAGGGAGATGTGCCTTGAGGGTGAGGGCCC-----CGGC--
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16030762 57 +  16417988 GTGGCTGCTTCAGGACCCTCCCGAAGGGAGATGTGCCTTGAGGGTGAGGGCCC-----CGCC--
i saiBol1.JH378155         I 4 C 0
s cebCap1.NW_016108158v1      116716 58 +    298490 GTGGCTGCTTCAGGACCCTCCTGCAGGGAGATGTGCCTTGAGGGTGAGGGCCC-----CGCCC-
i cebCap1.NW_016108158v1   I 95 I 100
s otoGar3.GL873745           1898821 46 -   2165740 GCAGCTAGCACAAAACATTCC--GTGGGAAGTGCACTCTATGGACATG----------------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11738043 47 +  42124431 GGGACAAGCC-------------CAGGGCTGC-TGCCCTCTGGATACGGGCCCATCTGTGC---
i canFam3.chr34            I 6 C 0
e aotNan1.NW_018503740v1    25444027 210 -  25620257 I

a score=564891.000000
s hg38.chr5_KI270793v1_alt     93492 84 +    126136 CACTGCA--------CATCTC----CCAAGCCATCCTCAGGG-CCCAGCTTACTACCATCTGTG------GCCTCCGC-ACACCTAAAATC-CAACACACACCCC
s panTro5.chr5             181359969 84 - 181907262 CACTGCA--------GATCTC----CCAAGCCATCCTCAGGG-CCCAGCTTACTACCATCTGTG------GCCTCCGC-ACACCTAAAATC-CAACACACACCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078891 84 - 183735486 CACTGCA--------GATCTC----CCAAGCCATCGTCAGGG-CCCAGCTTACTACCATCTGTG------GCCTCCGC-ACACCTAAAATC-CAACACACACCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172590 84 +    698298 CACTGCA--------GATCTC----CCAAGCCGTCCTCAGGG-CCCAGCTTACTCCCATCTGTG------GCCTCCGC-ACACCTAAAATC-CAACACACACCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590262 84 - 121039945 CACTGCA--------GATCTC----CCAGGCCATCCTCAGGG-CCCAGATTACTCCCATCTGTG------GCCTCCGC-ACACCTAAAATC-CAACACACACCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545571 83 - 180051392 CACTGCA--------GATCT-----CCAAGCCATCCTCAGGG-CCTAGTTTACTCCCATCTGTG------GCCTCCGT-ACACCTAAAATC-CAACACACACCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278722 83 - 181584905 CACTGCA--------GATCT-----CCAAGCCATCCTCAGGG-CCTAGTTTACTCCCATCTGTG------GCCTCCGT-ACACCTAAAATC-CAACACACACCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284798 83 -   1764207 CACTGCA--------GATCT-----CCAAGCCATCCTCAGGG-CCTAGTTTACTCCCATCTGTG------GCCTCCGT-ACACCTAAAATC-CAACACACACCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      289989 83 -  16742782 CACTGCA--------GATCT-----CCAAGCCATCCTCAGGG-CCTAGTTTACTCCCATCTGTG------GCCTCCAT-ACACCTAAAATC-CAACACACACCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592193 81 -  91010382 CACTGCA--------GATCT-----CCAAGCCATCCTCAGGG--CTAGTTTACTCCCATCTG-G------GCCTCCGT-ACACCTAAAATC-CAACACACACCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187773 83 -    438239 CACTGCA--------GATCT-----CCAAGCCATCCTCAGGG-CCTAGTTTACTCCCATCTGTG------GCCTCCGT-ACACCTAAAATC-CAACACACACCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217512 83 -    514179 CACTGCA--------GATCT-----CCAAGCCATCCTCAGGG-CCTAGTTTACTCCCATCTGTG------GCCTCTGT-ACACCTAAAATC-CAACACACACCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876554 87 + 204313951 CACTGCA--------GAC-------CCAGGGTGTCCACAGGG-CCCAGGGTACTCCCATCTGAGCTTACTCCCCGCCT-ATACCTTAAATCAAAATGCACACCC-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16030819 86 +  16417988 CACTGCA--------GAC-------CCAGGGCGTCCTCAGGA-CCCAGGGTGCTCCCATCTGAGCTTACTCCCAGCCT-GCACCTTAAATC-AAACGCACACCC-
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1898867 69 -   2165740 ---------------------------CTGTAACCCACAGGG-CCTGGCCGTCTCCTGTCTGTG------GCCTCTGTGGTGCCTGGAATC-CAACACACACCT-
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11738090 89 +  42124431 CACTGTGCTCCCAGCGACCTCAACTCGGAGCCGCCCACAGGGGCCCATCTCCCTCCCACCCACA------TCCTCCAG---------AATC-CAGCACATATCCC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25444027 210 -  25620257 I
e cebCap1.NW_016108158v1      116774 100 +    298490 I

a score=113039.000000
s hg38.chr5_KI270793v1_alt     93576 17 +    126136 AAGAAGACA-GGGGCCCT
s panTro5.chr5             181360053 17 - 181907262 AAGAAGACA-GGGGCCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078975 17 - 183735486 AAGAAGACA-GGGGCCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172674 17 +    698298 AAGAAGACA-GGGGCCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590346 17 - 121039945 AAGAAGACA-GGGACCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545654 17 - 180051392 AAGAAGACA-GGGGCCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278805 17 - 181584905 AAGAAGACA-GGGGCCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284881 17 -   1764207 AAGAAGACA-GGGGCCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290072 17 -  16742782 AAGAAGACA-GGGGCCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592274 17 -  91010382 AAGAAGACA-GGGGCCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187856 17 -    438239 AAGAAGACA-GGGGCCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217595 18 -    514179 AAGAAGACAGGGGGCCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876641 15 + 204313951 -AGAAGACA-GGGCTCT-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16030905 15 +  16417988 -AGGAGACG-GGGCTCT-
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25444237 16 -  25620257 AAGAAGACA-GGGCTCT-
i aotNan1.NW_018503740v1   I 210 C 0
s otoGar3.GL873745           1898936 17 -   2165740 GAGATATCA-AAGTCCCT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11738179  8 +  42124431 AAGAGTGC----------
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      116774 100 +    298490 I

a score=808707.000000
s hg38.chr5_KI270793v1_alt     93593  89 +    126136 GCCAGGGCTGGAGCCAGGGACAGCTGGGGGCCGGA----------A-GTGAGCATGT--GG-----------------------GGTCCTGCTAG----------------GTCCCAGGGGGATGCGGAGGGGGCTGCACC
s panTro5.chr5             181360070  89 - 181907262 GCCAGGGCTGGAGCCAGGGACAGCTGGGGGCCGGA----------A-GTGAGCATGT--GG-----------------------GGTCCTGCTAG----------------CTCCCAGGGGGATGCGGAGGGGGCTGCACC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183078992  91 - 183735486 GCCAGGGCTGGAGCCAGGGACAGCTGGGGGCCGGA----------A-GTGAGCATGTGGGG-----------------------GGTCCTGCTAG----------------CTCCCAGGGGGATGCGGAGGGGGCTGCACC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172691  89 +    698298 GCCAGGGCTGGAACCAGGGACATCTGGGGGCCGGA----------A-GTGAGCATGT--GG-----------------------GGTCCTGCTAG----------------CTCCCAGGGGGATGCGGAGGGGGCTGCACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590363  89 - 121039945 GCCAGGGCTGGAGCCAGGGACAGCTGGGGGCTGGA----------A-GTGAGTATGT--GG-----------------------GGTCCTGCTAG----------------CTACCAGGGGGATGTGGAGGGGGCTGCACC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545671  88 - 180051392 GCCAGGACTGGAGCCAGGGACAGCTGGGGGCCGGA----------A-GTGAGCCTGT--GG-----------------------GGTCCTGCTAG----------------CTACCA-GGGGATGCGAAGGGGGCTGCACC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278822  88 - 181584905 GCCAGGACTGGAGCCAGGGACAGCTGGGGGCCGGA----------A-GTGAGCCTGT--GG-----------------------GGTCCTGCTAG----------------CTACCA-GGGGATGCGAAGGGGGCTGCACC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284898  88 -   1764207 GCCAGGACTGGAGCCAGGGACAGCTGGGGGCCGGA----------A-GTGAGCCTGT--GG-----------------------GGTCCTGCTAG----------------CTACCA-GGGGATGCGAAGGGGGCTGCACC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290089  87 -  16742782 GCCAGGACTGGAGCCAGGGACAGCTGGGGGCCGGA----------A-GTGAGCCTGT--GG-----------------------GGTCCTGCTAG----------------CTACC--GGGGATGCGGAGGGGGCTGCACC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592291  87 -  91010382 GCCAGGACTGGAGCCAGGGACAGCTGGGGGCCGGA----------A-GTGAGCCTCT--GG-----------------------GGTCCTGCTAG----------------CTACCA-GGGGGTGCGGA-GGGGCTGCACC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187873  88 -    438239 GCCAGGACTGGAGCCAGGGACAGCTGGGGGCCGGA----------A-GTGAGCCTGC--GG-----------------------GGTCCTGCTAG----------------CTACCA-GGGGATGCGGAGGGGGCTGCACC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217613  88 -    514179 GCTAGGACTGGAGCCAGGGACAGCTGGGGGCCGGA----------A-GTGAGCCTGT--GG-----------------------GGTCCTGCTAG----------------CTACCA-GGGGATGCGGAGGGGGCTGCACC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876656  88 + 204313951 GTCAGGGCTGAGGCCAGGGACAGTGGGGGCCTGGA----------A-GTGAGCCTGT--GG-----------------------GGTCCCACTAG----------------CTACTG-GGGGATGCAGAGGAGGCTGCACC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16030920  88 +  16417988 GCCAGGGCTGAGGCCAGGGACGGTGGGGCTCCGGA----------A-GTGAGCCTGT--GG-----------------------GGTCCCACTAG----------------CTCCCA-GGGGATGCACAGGAGGGTGCCCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      116874  88 +    298490 GCCAGGGCTGAGGCCAGCGTCAGTGGGGGTCCGGA----------A-GTGAGCCTGT--GG-----------------------GGTCCCACTAG----------------CTGCCA-GGGGATGCAGAGGAGGCTGCACC
i cebCap1.NW_016108158v1   I 100 I 150
s aotNan1.NW_018503740v1    25444253  88 -  25620257 GCCAGGGCTGAGGCCAGGGACGGTGGGGGCCCGGA----------A-GTGAGCCTGT--GG-----------------------GGTCCCACTAG----------------CTACCA-GGGGATGCAGAGGAGGCTGCACC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1898953  87 -   2165740 GCCAGGGCTAGAGCCAGGGGCATGTGCAGTCCTCACACCCCTTTGA-TCACACCCAC--CT-----------------------GGCACTTCT-------------------CACCAGGAGGTTGGAGAGGA---------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11738187 119 +  42124431 ---------GATGCTGGGGGTGTCTAGGGGCTTGA----------AGGTGAGCACTT--GGACAACTAAGGACTGCCCCACCTTGCCCCTGCTCTGCCCTGACCTCTGACCCTCCCC-GAGGAGGCCAGTCGGCCAGTGCC
i canFam3.chr34            C 0 C 0

a score=1136511.000000
s hg38.chr5_KI270793v1_alt     93682 155 +    126136 ---ACCCACAGCACTGCTGAG----------------GAATGCC-ATTCCCTCAGCTCCGCGTCCACCCCGGGTCCCCCTTCCTATG--GGGGTGCTGACCT---GAGTCCTCACTTCCGCTCTGGG---TTTTCTCGCAGGAGTCTGGACAAGCAGCTG-GACTCGGGCAGG-TTGGGTC-AACT
s panTro5.chr5             181360159 155 - 181907262 ---ACCCACAGCACTGCTGAG----------------GAACGCC-ATTCCCTCAGCTCCGCGTCCACCCCGGGCCCCCCTTCCTATG--GGGGTGCTGACCT---GAGTCCTCACTTCCGCTCTGGG---TTTTCTCGCAGGAGTCTGGACAAGCAGCTG-GACTCGGGCAGG-TTGGGTC-AACT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079083 155 - 183735486 ---ACCCACAGCACTGCTGAG----------------GAACGCC-ATTCCCTCAGCTCCGCGTCCACCCCGGGCCCCCCTTCCTATG--GGGGTGCTGACCT---GAGTCCTCACTTCCGCTCTGGG---TTTTCTCGCAGGAGTCTGGACAAGCAGCTG-GACTCGGGCAGG-TTGGGTC-AACT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172780 155 +    698298 ---ACCCACAGCACTGCTGAG----------------GAACGCC-ATTCCCTCAGCTCCACGCCCACCCCGGGCCCCCCTTCCTATG--GGGGTGCTGACCT---GAGTCCTCACTTCCGCTCTGGG---TTTTCTCACAGGAGTCTGGACAAGCAGCTG-GACTCGGGCAGG-TTGGGTC-AACT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590452 155 - 121039945 ---ACCCACAGCACTGCTGAG----------------GAACGTC-ATTCCCTCAGCTCCACGCCCACCCCGGGCCCCCCTTCCTATG--GGGGTGCTGACCC---GAGTCCTCACTTCCGCTCTGGG---TTTTCTCGTGGGAGTCTGGACAAGCAGGTG-GACTTGGGCAGG-TCAGGTC-AACT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545759 154 - 180051392 ---ACCCACAGCACTGCTGAG----------------GAACGCC-ATTCCCTCAGCTCCACGCCCACCCCAGGCCCCCCTTCCTATG--GGGGTGCTGACCG---GAGTCCTCACTTCCACTCTGGG---TTTTCTCGCAGGAGTCTGGACAAGCAGGT--GACTGGGGCAGG-TTGGGTC-AACT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181278910 153 - 181584905 ---ACCCACAGCACTGCTGAG----------------GAACGCC-ATTCCCTCAGCTCCACGCCCACCCCAGG-CCCCCTTCCTATG--GGGGTGCTGACCG---GAGTCCTCACTTCCACTCTGGG---TTTTCTCGCAGGAGTCTGGACAAGCAGGT--GACTGGGGCAGG-TTGGGTC-AACT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      284986 154 -   1764207 ---ACCCACAGCACTGCTGAG----------------GAACGCC-ATTCCCTCAGCTCCACGCCCACCCCAGGCCCCCCTTCCTATG--GGGGTGCTGACCG---GAGTCCTCACTTCCACTCTGGG---TTTTCTCGCAGGAGTCTGGACAAGCAGGT--GACTGGGGCAGG-TTGGGTC-AACT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290176 153 -  16742782 ---ACCCACAGCACTGCTGAG----------------GAACGCC-GTTCCCTCAGCTCCACGCCCACCCCGGGCCCCCCTTCCTAT---GGGGTGCTGACCC---GAGTCCTCACTTCCACTCTGGG---TTTTCTCGCAGGAGTCTGGACAAGCAGGT--GACTGGGGCAGG-TTGGGTC-AACT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592378 154 -  91010382 ---ACCCACAGCACTGTTGAG----------------GAACGCC-ATTCCCTCAGCTCCACGCCCACCCCGGGCCTCCCTTCCTATG--GGGGTGCTGACCG---GAGTCCTCACTTCCGCTCTGGG---TTTTCTCGCAGGAGTCTGGACAAGCAGGT--GACTGGGGCAGG-TTGGGTC-AACT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      187961 153 -    438239 ---ACCCACAGCACTGCTGAG----------------GAACGCC-GTTCCCTCAGCTCCACGCCCACCCCGGGCCCCCCTTCCTAT---GGGGTGCTGACCC---GAGTCCTCACTTCCACTCTGGG---TTTTCTCGCAGGAGTCTGGACAAGCAGGT--GACTGGGGCAGG-TTGGGTC-AACT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217701 154 -    514179 ---ACCCACAGCACTGCTGAG----------------GAACGCC-ATTCCCTCAGCTCCACGCCCACCCCGGGTCCCCCTTCCTATG--GGGGTGCTGACCC---GAGTCCTTACTTCCACTCTGGG---TTTTCTCGCAGGAGTCTGGACAAGCGGGT--GACTGGGGCAGG-TTGGGTC-AACT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876744 151 + 204313951 ----CCCACA-CACTGCCAAG----------------GAACGCC-TTCCCCTCAGCTCCACTCCCAG-CTGGG-CCCCATTCTTAC---GGGGTTCTGACCC---GAGTCGTCACTTCCGCCCTGGC---TTTCATCGCAGGAGTCTGGACAAGCAGGCG-GGCTCAGGCAAG-TCGGGGCTGACT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16031008 152 +  16417988 ----CTCGCA-CACTGCTGAG----------------GAACGCC-TTCCCCTCAGCGCCGCTCCCTGCCCGGG-CCCCCTTCTTAC---GGGGTTCTGACCC---GAGCCCTCACTTCTGCCCCGGC---TTTCATGGGAGGAGTCTGGACAAGCAGGCA-GGCTCGGGCAGG-CGGGGGCTGACT
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25444341 152 -  25620257 ----CTCACA-CGCTGCTGAG----------------GAACGCC-TTCCCCTCAGCTCCACTCCCAGCCTGGG-CCCCCTTCTTAT---GGGGCTCTGACCT---GAGTTGTCACTTCCGCCCTGGC---TTTCATCGCAGGAGTCTGGACCAGCAGGCG-GGCTCGGGCAGG-TCGGGGCTGACT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1899040 112 -   2165740 ------------ACAGCTG------------------------------TCCCAGCCTGGCTCCGGGGCCTATAGTCCTTTCCTACAGTGGGGTGGGGGCC--------CCTGGAGCCTGTTTGGGGA--ACTTCTCACAGGAGTCTGAGCAAACAGAT--GACCT--------------------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11738306 166 +  42124431 TGCTCCCCAAGCTCTCCTGGGCCTGCAGCCTACGGTAAAATGCCTGTGTCTTCAGGGCCA--------------TCTTCTCCCGGTG--GGGATGGGCTCCTGGAGGGTGCTTATTT--GTTTTGGAGGCGTGTCTCACGAGTGTCTGAAAGAGCAGGTACACCCCGGGCAAGCCTGGAGC-AGA-
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      116962 150 +    298490 I

a score=1644681.000000
s hg38.chr5_KI270793v1_alt     93837 187 +    126136 CAGGATGTCCTCGTG-----------CGTGAGC-TACAGGGTCACAGGCCAGGGTCAGAGGCCAGGCCTGAAGGGGACACCTGGCCCCGCTCGGACAGGGAGGAGAGCACTGGTCCCCAGCAGTGTCCCAGCAGCCAGCCTCCCTCCAGGTGCCGTCTCAGGCCTGCCCTGTCTGCGCCCAAGTGCCTCTGCAGGGCCC
s panTro5.chr5             181360314 187 - 181907262 CAGGATGTCCTCGTG-----------CATGAGC-TACAGGGTCACAGGCCAGGGTCAGAGGCCAGGCCTGAAGGGGACACCTGGCCCCGCTCGGACAGGGAGGAGAGCACTGGTCCCCAGCAGTGTCCCAGCAGCCAGCCTCCCTCCAGGTGCCGTCTCAGGCCTGCCCCGCCTGCGCCCAAGTGCCTCTGCAGGGCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079238 187 - 183735486 CAGGATATCCTCGTG-----------CGTGAGC-TACAGGGTCACAGGCCAGGGTCAGAGGCCAGGCCTGAAGGGGACACGTGGCCCCGCTCGGACAGGGAGGAGAGCACTGGTCCCCAGCAGTGTCCCAGCAGCCAGCCTCCCTCCAGGTGCCGTCTCAGGCCTGCCCCGTCTGCGCCCAAGTGCCTCTGCAGGGCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      172935 187 +    698298 CAGGATGTCCTCGTG-----------CATGAGC-TACAGGGTCACAGGCCAGGGTCAGAGGCCAGGCCTGAAGGGGACACCTGGCCCCGCTCGGACAGGGAGGAGAGCACTGGTCCCCAGCAGTGTCCCAGCAGCCAGCCTCCCTCCAGGTGCCGTCTCAGGCCTGCCCCGTCTGCGCCCAAGTGCCTCTGCAGGGCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590607 176 - 121039945 CAAGATGTCCTCGTG-----------CATGAGC-TACAGGGTCACAGGCCAGGGTCAGAGGCCAGGCCTGAAGGGGACACCTGGCCCCACTCGGACAGGGAGGAGAGCACTGGTCCCTGGCAGTGTCCCA-----------CCCTCCAGGTGCCATCTCAGGCCTGCCCCGTCTGCGCCCAAGTGCCTCTGCAGGGCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179545913 187 - 180051392 CAGGATATCCTCGTG-----------CATGAGC-TAGAGGGTCACAGGCCAGGGTCACAGGCCAGGCCTGAAGGGGACACCTGGCCCCACTCAGACAGGGAGGAGAGCACTGGTACCCAGCAGTGTCCCAGCAGACAGCTTCCCTCTGCGCATCGCCTCAGGCCTGCCCCGTCTGTGCCCAACTGCCTCTGCAGGGCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279063 187 - 181584905 CAGGATATCCTCGTG-----------CATGAGC-TACAGGGTCACAGGCCAGGGTCACAGGCCAGGCCTAAAGGGGACACCTGGCCCCACTCAGACAGGGAGGAGAGCACTGGTACCCAGCAGTGTCCCAGCAGCCAGCTTCCCCCTGCGCATCGCCTCAGGCCTGCCCCGTCTGTGCCCAACTGCCTCTGCAGGGCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285140 187 -   1764207 CAGGATATCCTCGTG-----------CATGAGC-TAGAGGGTCACAGGCCAGGGTCACAGGCCAGGCCTGAAGGGGACACCTGGCCCCACTCAGACAGGGAGGAGAGCACTGGTACCCAGCAGTGTCCCAGCAGCCAGCTTCCCTCTGTGCATCGCCTCAGGCCTGCCCCGTCTGTGCCCAACTGCCTCTGCAGGGCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290329 187 -  16742782 CAGGATATCCTCGTG-----------CATGAGC-TACAGGGTCACAGGCCAGGGTCACAGGCCAGGCCTGAAGGGGACACCTGGCCCCACTTGGACAGGGAGGAGAGCACTGGTCCCCAGCAGTGTCCCAGCAGCCAGCTTCCCTCTGCATGTCGCCTCAGGCCTGCCCCGTCTGTGCCCAACTGCCTCTGCAGGGCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592532 174 -  91010382 CAGGATATCCTCGTG-----------CATGAGC-TA-------------CAGGGTCACAGGCCAGGCCTGAAGGGGACACCTGGCCCCGCTCGGACAGGGAGGAGAGCACTGGTCCCCAGCAGTGTCCCAGCAGCCAGCTTCCCTCTGAGTGTCGCCTCAGGCCTGCCCCGTCTGTGCCCAACTGCCTCTGCAGGGCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188114 187 -    438239 CAGGATATCCTCGTG-----------CATAAGC-TACAGGGTCACAGGCCAGGGTCACAGGCCAGGCCTGAAGGGGACACCTGGCCCCACTCGGACAGGGAGGAGAGCACTGGTCCCCAGCAGTGTCCCAGCAGCCAGCTTCCCTCTGCATGTCGCCTCAGGCCTGCCCCGTCTGTGCCCAACTGCCTCTGCAGGGCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      217855 187 -    514179 CAGGATGTCCTCGTG-----------CATGAGC-TACAGGGTCACAGGCCAGGGTCACAGGCCAGGCCTGAAGGGGACACCTGGCCCTGCTCAGACAGGGAGGAGAGCACTGGTCCCCAGCAGTGTCCCAGCAGCCAGCTTCCTTCTGAGTGTCGCCTCAGGCCTGCCCCATCTGTGCCCAAGTGCCTCTGCAGGGCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203876895 185 + 204313951 CAGGACGTCCTTGTG-----------CATGAGC-TACAGGGTCGAGGGT--GGGTCAGAGACCAGGCCTGGAGAGGACACCTGGCCTCACTGGGACAGGGACAAGAGCCCTGGTCCCCCGCAGTGTCGGGGCAGCCAGCCTCCCTCCCGGTGCCCTTCCAGGCCTGCCCTGTCCGTGCCTAAGAGCCTCTGCAAGGCCC
i calJac3.chr2             C 0 I 183
s saiBol1.JH378155          16031160 196 +  16417988 CAGGACCTCCTCGTGCGTGAGCTGTTCGTGAGC-TACAGGGTCGAGGGC--GGGTCAGAGACCAGGCCTGGGGAGGACACCTGGCCTCACGGGGACAGGGAGGAGAGTGCCCGTCCCCAGCAGTGTCGGGGCAGCCAGCCTCCCTCTCGGTGCCCTTCCAGGCCTTCCCTGTCCGTGCCCAAGAGCCTCTGCAGGGCCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      117112 185 +    298490 CAGGATGTCCTCGTG-----------CAGGAGC-CACAGGGTCGAAGGC--GGGCCAGAGACCAGGCCTGGAGAGGACACCTGGCCTCACTGGGACAGGGAGGAGAGCGCCGGTCCCCAGCAGTGTCGGGGCAGCCAGCCTCCCTCCTGGTGCCCTTCCAGGCCTGCCCTGTCCGTGCCCAAGAGCCTCTGCAGGGCCC
i cebCap1.NW_016108158v1   I 150 C 0
s aotNan1.NW_018503740v1    25444493 185 -  25620257 CAGGACGTCCTCGTG-----------CATGAGC-TACAGGGTCGAGGGC--GGGTCAGAGACCAGGCCTGGAGAGGACACCTGGCCTCACTGGGACAGGGAGGACAGCACTGGTCCCCAGCAGTGTCGGGGCAGCCAGCCTCCCTCCCGGCACCCTTCCAGGCCTGCTCTGTCCGTGCCCAAGGGCCTCCGCAGGGCCC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1899152  84 -   2165740 -----------------------------------------------------GTGCGAGGC-------------------TGACCTC-CCCAGACAAATGG------------------------------AGCC-GCATCCCTCCGAGTGCTGTCT---GCATG--------GTTCCAAAGGAGCCTCTCAAGGCCC
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11738472 162 +  42124431 CGGGGTGGCCTCCTT-----------GGTGACTGTGCAGCAT---------GTGTCAG----CAGGACTGA---GTCCCCCCACCGCCCCTGGGATGGGCTGAAACGCTCA---TCCCTGCAGCCTCCAGACAG-TGCCCTCCCTCCCACAGCCGTCTCAGGTCTGCC------AGGGGCCGCAGGCTCTAAAGGGTCT
i canFam3.chr34            C 0 C 0

a score=25976.000000
s hg38.chr5_KI270793v1_alt     94024 2 +    126136 CA
s panTro5.chr5             181360501 2 - 181907262 CA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079425 2 - 183735486 CA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      173122 2 +    698298 CA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590783 2 - 121039945 CA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179546100 2 - 180051392 CA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279250 2 - 181584905 CA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285327 2 -   1764207 CA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290516 2 -  16742782 CA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592706 2 -  91010382 CA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188301 2 -    438239 CA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      218042 2 -    514179 CA
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16031356 2 +  16417988 CA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      117297 2 +    298490 CA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25444678 2 -  25620257 CA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1899237 2 -   2165740 CA
i otoGar3.GL873745         I 1 I 186
s canFam3.chr34             11738634 2 +  42124431 CA
i canFam3.chr34            C 0 C 0
e calJac3.chr2             203877080 183 + 204313951 I

a score=32323.000000
s hg38.chr5_KI270793v1_alt     94026 3 +    126136 GGG
s panTro5.chr5             181360503 3 - 181907262 GGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079427 3 - 183735486 GGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      173124 3 +    698298 GGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590785 3 - 121039945 GGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179546102 3 - 180051392 GGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279252 3 - 181584905 GGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285329 3 -   1764207 GGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290518 3 -  16742782 GGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592708 3 -  91010382 GGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188303 3 -    438239 GAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      218044 3 -    514179 GGG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16031358 3 +  16417988 GAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      117299 3 +    298490 GGG
i cebCap1.NW_016108158v1   C 0 I 21
s aotNan1.NW_018503740v1    25444680 3 -  25620257 GGG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11738636 3 +  42124431 GGG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1899239 186 -   2165740 I
e calJac3.chr2             203877080 183 + 204313951 I

a score=203552.000000
s hg38.chr5_KI270793v1_alt     94029 75 +    126136 CTGGGAGGTCACAG-----AGCAGTGGC-CAGGACAGGCTGGATGGGGCCGTGGTCCACCGGGCTGGGAGACGAATCCTGG
s panTro5.chr5             181360506 75 - 181907262 CTGGGAGGTCACAG-----AGCAGTGGC-CAGGACAGGCTGGATGGGGCCGTGGTCCACCGGGCTGGGAGACGAATCCTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079430 75 - 183735486 CTGGGAGGTCACAG-----AGCAGTGGC-CAGGACAGGCTGGATGGGGCCGTGGTCCACCGGGCTGGGAGACGAATCCTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      173127 75 +    698298 CTGGGAGGTCACAG-----AGCAGTGGC-CGGGACAGGCTGGATGTGGCTGTGGTGCACCGGGCTGGGAGACGAATCATGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590788 75 - 121039945 CTGGGAGGTCACAG-----AGCAGCGGC-CGGGACAGGCTGGATGGGGCCGTGGTGCACCGGGCTGGGAGACAAATCCTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179546105 36 - 180051392 CTGGGAGGTCACAG-----AGCAGTGGC-CGGGACAGGC---------------------------------------TGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279255 36 - 181584905 CTGGGAGGTCACAG-----AGCAGTGGC-CGGGACAGGC---------------------------------------TGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285332 36 -   1764207 CTGGGAGGTCACAG-----AGCAGTGGC-CGGGACAGGC---------------------------------------TGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290521 36 -  16742782 CTGGGAGGTCACAG-----AGCAGTGGC-CGGGACAGGC---------------------------------------TGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592711 36 -  91010382 CTGGGAGGTCACAG-----AGCAGTGGC-CGGGACAGGC---------------------------------------TGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188306 36 -    438239 CTGGGAGGTCACAG-----AGCAGTGGC-CGGGACAGGC---------------------------------------TGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      218047 36 -    514179 CTGGGAGGTCACAG-----AGCAGTGGC-CGGGACAGGC---------------------------------------TGG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16031361 20 +  16417988 ----GAGGGCATGG-----AGCAGTGGC-C---------------------------------------------------
i saiBol1.JH378155         C 0 I 1
s aotNan1.NW_018503740v1    25444683 20 -  25620257 ----GAGGTCATGG-----AGCAGTGGC-C---------------------------------------------------
i aotNan1.NW_018503740v1   C 0 I 1
s canFam3.chr34             11738639 58 +  42124431 CCTGGGCGTCCCAGTGAGTAGCAGTGGCACTGATCAGGT-----GGGACAGAGGTGCACC------------------TGG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1899239 186 -   2165740 I
e cebCap1.NW_016108158v1      117302 21 +    298490 I
e calJac3.chr2             203877080 183 + 204313951 I

a score=64281.000000
s hg38.chr5_KI270793v1_alt     94104 10 +    126136 ATGGGGCCGT
s panTro5.chr5             181360581 10 - 181907262 ATGGGGCCGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079505 10 - 183735486 ATGGGGCCGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      173202 10 +    698298 ATGGGGCCGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590863 10 - 121039945 ATGGGGCCGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179546141 10 - 180051392 ATGGGGCCAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279291 10 - 181584905 ATGGGGCCAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285368 10 -   1764207 ATGGGGCCAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290557 10 -  16742782 ATGGGGCCAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592747 10 -  91010382 ATGGGGCCAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188342 10 -    438239 ATGGGGCCTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      218083 10 -    514179 ATGGGGCCAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203877263 10 + 204313951 ATGGAGCAGT
i calJac3.chr2             I 183 I 5
e aotNan1.NW_018503740v1    25444703  1 -  25620257 I
e otoGar3.GL873745           1899239 186 -   2165740 I
e cebCap1.NW_016108158v1      117302 21 +    298490 I
e saiBol1.JH378155          16031381  1 +  16417988 I
e canFam3.chr34             11738697  0 +  42124431 C

a score=494746.000000
s hg38.chr5_KI270793v1_alt     94114 48 +    126136 GGTGCACCGGGCTGGGAGACAAATCCTGCCCGGGCTCTGGCAAGTCAC
s panTro5.chr5             181360591 48 - 181907262 GGTGCACCGGGCTGGGAGACAAATCCTGCCCGGGCTCTGGCAAGTCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079515 48 - 183735486 GGTGCACCGGGCTGGGAGACAAATCCTGCCCGGGCTCTGGCAAGTCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      173212 48 +    698298 GGTGCACCGGGCTGGGAGACGAATCCTGCCCGGGCTCTGGCAAGTCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590873 48 - 121039945 GGTGCACCGGGCTGGGAGACAAATCCTCCCCGGGCTCTGGCAAGTCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179546151 48 - 180051392 GGTGCACCCGGCTGGGAGACAAATCCTGCCCGGGCTCTGGCAAGTCAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279301 48 - 181584905 GGTGCACCCGGCTGGGAGACAAATCCTGCCCGGGCTCTGGCAAGTCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285378 48 -   1764207 GGTGCACCCGGCTGGGAGACAAATCCTGCCCGGGCTCTGGCAAGTCAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290567 48 -  16742782 GGTGCACCCGGCTGGGAGACAAATCCTGCCCGGGCTCTGGCAAGTCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592757 48 -  91010382 GGTGCACCCAGCTGGGAGACAAATCCTGCTCGGGCTCTGGCAAGTCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188352 48 -    438239 GGTGCACCCGGCTGGGAGACAAATCCTGCCCGGGCTCTGGCAAGTCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      218093 48 -    514179 GGTGCACCTGGCTAGGAGACAAATCCTGCCCGGGCTCTGGCAAGTCAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203877278 48 + 204313951 GGTGCCCCAGGCTGGGAGGCAAATCCCTCCCAGGCTCTGGCAAGTCAT
i calJac3.chr2             I 5 I 4
s saiBol1.JH378155          16031382 48 +  16417988 GGTGCCCCAGGCTGGGAGACAAATCCCTCCCAGGCTCTGGCAAGTCGC
i saiBol1.JH378155         I 1 I 4
s cebCap1.NW_016108158v1      117323 48 +    298490 GGTGCCCCAGGCTGGGAGACAAACCCCTCCCAGGCTCTGGCAAGTCAC
i cebCap1.NW_016108158v1   I 21 I 20
s aotNan1.NW_018503740v1    25444704 48 -  25620257 GGTGCCCCAGGCTGGGAGACAAATCCCTCCCAGGCTCTGGCAAGTCGC
i aotNan1.NW_018503740v1   I 1 I 5
s canFam3.chr34             11738697 33 +  42124431 ---------GGCTGGAGGCCA---CCTCCCC--GCTGTGG-GAGTCCC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1899239 186 -   2165740 I

a score=74530.000000
s hg38.chr5_KI270793v1_alt     94162 13 +    126136 CCCCTA---CCCTGTG
s panTro5.chr5             181360639 13 - 181907262 CCCCTA---CCCTGCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079563 13 - 183735486 CCCCTA---CCCTGCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      173260 13 +    698298 CCCCTA---CCCTGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590921 13 - 121039945 CCCCTA---CCCTGCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179546199 13 - 180051392 CCCCCA---CCCTGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279349 13 - 181584905 CCCCCA---CCCTGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285426 13 -   1764207 CCCCCA---CCCTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290615 13 -  16742782 CCCCCA---CCCTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592805 13 -  91010382 CCCCCA---CCCTGTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188400 13 -    438239 CCCCCA---CCCTGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      218141 13 -    514179 CCCCCA---CCCTGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203877330 13 + 204313951 CTCCTG---CCCCCTC
i calJac3.chr2             I 4 I 1
s saiBol1.JH378155          16031434 16 +  16417988 CCCCCGCCACCCCCTC
i saiBol1.JH378155         I 4 I 1
s aotNan1.NW_018503740v1    25444757 13 -  25620257 CCCCCG---CCCCCTC
i aotNan1.NW_018503740v1   I 5 I 1
s canFam3.chr34             11738730  4 +  42124431 ----------CCTG--
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1899239 186 -   2165740 I
e cebCap1.NW_016108158v1      117371 20 +    298490 I

a score=439704.000000
s hg38.chr5_KI270793v1_alt     94175 43 +    126136 CTGAGCCAGCCCCGCCTGCAGGAGGTTGAGGTTTGTGCTGGGG------
s panTro5.chr5             181360652 43 - 181907262 CTGAGCCAGCCCCGCCTGCAGGAGGTTGAGGTTTGTGCTGGGG------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079576 43 - 183735486 CTGAGCCAGCCCCGCCTGCAGGAGGTTGAGGTTTGTGCTGGGG------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      173273 42 +    698298 CTGAGCCAGCCCCGCCTGCAGGAGGTTGAGGTTTGTGCT-GGG------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590934 43 - 121039945 CTGAGCCAGCCCCGCCTGCAGGAGGTTGAGGCTTGTGCTGCGG------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179546212 43 - 180051392 CTGAGCCAGCCCCGCCTGCGGGAGGTTGAGGCGTGTGCTGGGG------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279362 43 - 181584905 CTGAGCCAGCCCCGCCTGCGGGAGGTTGAGGCGTGTGCTGGGG------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285439 43 -   1764207 CTGAGCCAGCCCTGCCTGCGGGAGGTTGAGGCGTGTGCTGGGG------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290628 43 -  16742782 CTGAGCCAGCCCCGCCTGCGGGAGGTTGAGGCGTGTGCTGGGG------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592818 43 -  91010382 CTGAGCCAGCCCCGCCTGCGGGAGGTTGAGGCGTGTGCTGGGG------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188413 43 -    438239 CTGAGCCAGCCCCGCCTGCGGGAGGTTGAGGCGTGTGCTGGGG------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      218154 43 -    514179 CTGAGCCAGCCCCACCTGCAGGAGGTTGAGGCTTGTGCTGGGG------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203877344 43 + 204313951 CTGAGCCAGCCCTGCCTGTGGGAGGTTGAGGCTTGTGCTGGGG------
i calJac3.chr2             I 1 I 6
s saiBol1.JH378155          16031451 42 +  16417988 CTGAGCCAGCCCTGGCTGCAGGAGGTTGAGGA-TGTGCTGGGG------
i saiBol1.JH378155         I 1 I 6
s cebCap1.NW_016108158v1      117391 43 +    298490 CTGAGCCAGCCCTGCCTGCGGGAGGTTGAGGCTTGTGCTGGGG------
i cebCap1.NW_016108158v1   I 20 I 106
s aotNan1.NW_018503740v1    25444771 43 -  25620257 CTGAGCCAGCCCTGACTGCCGGAGGTTGAGGCTTGTGCTGGGG------
i aotNan1.NW_018503740v1   I 1 I 6
s canFam3.chr34             11738734 48 +  42124431 CTGAGCCAGCCC-GCCTGTGGGCCGGCCAAGACGACGTCAGGTCACAGG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1899239 186 -   2165740 I

a score=722583.000000
s hg38.chr5_KI270793v1_alt     94218 104 +    126136 TCGGCACAGGTGGGGTGAGT-------TCCCAAGCGGCTCCG------TGAACAACTGCTCTTCCCGATTGCTGGCA--CTCGCGGAAGGGTTAGGTCAGAGACAGGGAAGGCCGCGGC
s panTro5.chr5             181360695 104 - 181907262 TTGGCACAGGTGGGGTGAGT-------TCCCAAGCGGCTCCG------TGAACAACTGCTCTTCCCGATTGCTGGCA--CTCGCGGAAGGGTTAGGTCAGAGACAGGGAAGGCCGCGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079619 104 - 183735486 TCGGCACAGGTGGGGTGAGT-------TCCCAAGCGGCTCCG------TGAACAACTGCTCTTCCCGATTGCTGGCA--CTCGCGGAAGGGTTAGGTCAGAGACAGGGAAGGCCGCGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      173315 104 +    698298 TTGGCACAGGTGGGGTGAGT-------TCCCAAGCGGCTCCG------TGAACAACTGCTCTTCCCGATTGCTGGCA--CTCGCGGAAGGGTTAGGTCAGAGACAGGGAAGGCCACGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120590977 104 - 121039945 TCGGCACAGGTGCGGTGAGT-------TCCCACGCGGCTCCG------TGAACAACTGCTCTTCCCGATTGCTGGCA--CTTGCGGAAGCGTTAGGTCAGAGACAGTGAAGGCCACGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179546255 103 - 180051392 TCAGCACAGGTGTGGTGAGT-------TCCCACGCAGCTCCG------TGGACAACTGCTCTTCCC-GCTGCTGGCA--CTGGCAGAAGGGTTAGGACAGAGACAGTGAAGGCCGTGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279405 103 - 181584905 TCAGCACAGGTGTGGTGAGT-------TCCCACGCAGCTCCG------TGGACAACTGCTCTTCCC-GCTGCTGGCA--CTCGCAGAAGGGTTAGGCCAGAGACAGTGAAGGCCGTGGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285482 103 -   1764207 TCAGCACAGGTGTGGTGAGT-------TCCCACGCAGCTCCG------TGGACAACTGCTCTTCCC-GCTGCTGGCA--CTCGCAGAAGGGTTAGGCCAGAGACAGTGAAGGCCGTGGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290671 103 -  16742782 TCAGCACAGGTGTGGTGAGT-------TCCCACGCAGCTCCC------TGAACAACTGCTCTTCCC-GCTGCTGGCA--CTCGCAGAAGGGTTAGGCCAGAGACAGTGGAGGCCATGGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592861 104 -  91010382 TCAGCACAGGTGTGGTGAGT-------TCCCACGCAGCTCCG------TGAACAACTGCTCTTCCCGGCTGCTGGCA--CTCGCAGAAGGGTTAGGCCAGAGACAGTGAAGGCCATGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188456 103 -    438239 TCAGCACAGGTGTGGTGAGT-------TCCCACGCAGCTCCC------TGAACAACTGCTCTTCCC-GCTGCTGGCA--CTCGCAGAAGGGTTAGGCCAGAGACAGTGGAGGCCATGGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      218197 104 -    514179 TCAGCACAGGTGTGGTGAGT-------TCCCACGCAGCTCTG------TGAACAACTGCTCTTCCCGGCTGCTGGCA--CTCGCAGAAGGGTTAGGCCAGAGACAGTGAAGGCCATGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203877393 100 + 204313951 ATGACACAGGCACAGCGAGT-------TCCCACGTGGCTCTG------TGAGCAACTGATCTCCCAGGCAGCTTGCA--CTGG-AGAAGGGTCAGGCCAGAGACGGAGACGGCCGT---
i calJac3.chr2             I 6 C 0
s saiBol1.JH378155          16031499 100 +  16417988 ATGACGCAGGCACGGCGAGT-------TCCCTCTCGACTCTG------TGAGCCGCTGCTCTCCCAGGCCACCTGCA--CTGG-ACAAGGGTCAGGCCAGAGACGGAGACGGCGGT---
i saiBol1.JH378155         I 6 C 0
s aotNan1.NW_018503740v1    25444820  98 -  25620257 ATGA--CAGGCACGGTGAGT-------TCCCACGCAGCTCTG------TGAGCAACTGCTCTCCCAGGCCGCTTGCA--CTGG-AGAAGGGTCAGGCCAGAGACGGAGACGGCCGT---
i aotNan1.NW_018503740v1   I 6 C 0
s canFam3.chr34             11738782 110 +  42124431 ---TCACATGTGCAGGGGGTGCAGGGCTCCTGCGCTGAGCTGAGCGGAAGAGCAAGAGCCAGTCCCTCTTGCCTCAAAGCCCAGAGGAGGGTCAGG-CGGAGGTGGACAGGTGC-----
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1899239 186 -   2165740 I
e cebCap1.NW_016108158v1      117434 106 +    298490 I

a score=23439.000000
s hg38.chr5_KI270793v1_alt     94322 4 +    126136 ---TCAG
s panTro5.chr5             181360799 4 - 181907262 ---TCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079723 4 - 183735486 ---TCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      173419 4 +    698298 ---TCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120591081 4 - 121039945 ---TCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179546358 4 - 180051392 ---TCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279508 4 - 181584905 ---TCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285585 4 -   1764207 ---TCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290774 4 -  16742782 ---TCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592965 4 -  91010382 ---TCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188559 4 -    438239 ---TCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      218301 4 -    514179 ---TCAG
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1899425 4 -   2165740 ---TCAG
i otoGar3.GL873745         I 186 C 0
s canFam3.chr34             11738892 4 +  42124431 ATGT---
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25444918 0 -  25620257 C
e cebCap1.NW_016108158v1      117434 106 +    298490 I
e saiBol1.JH378155          16031599 0 +  16417988 C
e calJac3.chr2             203877493 0 + 204313951 C

a score=15652710.000000
s hg38.chr5_KI270793v1_alt     94326 1629 +    126136  
s panTro5.chr5             181360803 1630 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183079727 1630 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      173423 1616 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120591085 1629 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179546362 1624 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181279512 1619 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      285589 1623 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      290778 1623 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90592969 1624 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      188563 1623 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      218305 1625 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203877493 1616 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16031599 1637 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      117540 1639 +    298490  
i cebCap1.NW_016108158v1   I 106 C 0
s aotNan1.NW_018503740v1    25444918 1640 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1899429 1333 -   2165740  
i otoGar3.GL873745         C 0 I 350
s canFam3.chr34             11738896 1678 +  42124431  
i canFam3.chr34            C 0 C 0

a score=201562.000000
s hg38.chr5_KI270793v1_alt     95955 27 +    126136 GCGGTCACCGCCTGACACAGGTCACTC
s panTro5.chr5             181362433 27 - 181907262 GCGGTCACCGCCTGACACAGGTCACTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081357 27 - 183735486 GCGGTCACTGCCTGACACAGGTCACTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175039 27 +    698298 GCGGTCACCGCCTGACACAGGTCACTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592714 27 - 121039945 GCGGTCGCCGCCTGACACAGGTCACTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179547986 27 - 180051392 GCGGTCACTGCCTGACACAGGTCACTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281131 27 - 181584905 GCGGTCACTGCCTGACACAGGTCACTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287212 27 -   1764207 GCGGTCACTGCCTGACACAGGTCACTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292401 27 -  16742782 GCGGTCACTGCCTGACACAGGTCACTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594593 27 -  91010382 GCGGTCACTGCCTGACACAGGTCACTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190186 27 -    438239 GCGGTCACTGCCTGACACAGGTCACTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      219930 27 -    514179 ACGGTCACTGCCTGACACAGGTCACTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879109 18 + 204313951 GAAGTCACTACCTGACAC---------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033236 18 +  16417988 GAAGTCACCACCTGACAC---------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119179 16 +    298490 GAAGTCACCACCTGAC-----------
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25446558 27 -  25620257 GAAGTCACCACCTGACACAGGTCACTC
i aotNan1.NW_018503740v1   C 0 I 119
s canFam3.chr34             11740574 17 +  42124431 ------GCTGGCAGAC-CAGTCCC---
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1900762 350 -   2165740 I

a score=399895.000000
s hg38.chr5_KI270793v1_alt     95982 47 +    126136 AGGTCACTCTGACAGTTT----CAGGGACGCACTGAGGTACATGGCATGGG
s panTro5.chr5             181362460 47 - 181907262 AGGTCACTCTGACAGTTT----CAGGGATGCACTGAGGTACATGGCATGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081384 47 - 183735486 AGGTCACTCTGACAGTTT----CAGGGATGCACTGAGGTACATGGCATGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175066 47 +    698298 AGGTCACTCTGACAGTTT----CAGGGATGCACTGAGGTACATGGCATGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592741 47 - 121039945 AGGTCACTCTGACAGTTT----CAGGGATACACTGAGGTACATGGCATGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548013 47 - 180051392 AGGCCACTCTGACAGTTT----CAGGGATGCGCTGAGGTACATGGCATGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281158 47 - 181584905 AGGCCACTCTGACAGTTT----CAGGGATGCGCTGAGGTACATGGCATGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287239 47 -   1764207 AGGCCACTCTGACAGTTT----CAGGGATGCGCTGAGGTACATGGCATGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292428 47 -  16742782 AGTCCACTCTGACAGTTT----CAGGGATGTGCTGAGGTACATGGCATGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594620 47 -  91010382 AGGCCACTCTGACAGTTT----CAGGGATGCGCTGAGGTACATGGCTCGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190213 47 -    438239 AGGCCACTCTGACAGTTT----CAGGGATGCGCTGAGGTACATGGCATGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      219957 47 -    514179 AGGTCACTCCGACAGTTT----CAGGGATGCACCGAGGTACATGGCACGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879127 47 + 204313951 AGGTCACTCTGACAGTTT----CGGGGACGTGCCTAGGTGCACAGCATGAG
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16033254 47 +  16417988 AGGTCACTCTGAGAGTTT----CGGGGACGTGCTAAGGCACACGGCATGAG
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1      119195 34 +    298490 -------------AGCTT----CAGGGACGTGCTGAAGTGCACGGCAGGAG
i cebCap1.NW_016108158v1   C 0 I 123
s canFam3.chr34             11740591 51 +  42124431 AGGTTATTCTGAATTTTTGGGACAGGAACCCACCGTGGTGCATAGTGTGGG
i canFam3.chr34            C 0 I 4
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I

a score=-4900.000000
s hg38.chr5_KI270793v1_alt     96029 2 +    126136 AA-
s panTro5.chr5             181362507 2 - 181907262 AA-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081431 2 - 183735486 AA-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175113 2 +    698298 AA-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592788 2 - 121039945 CA-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548060 2 - 180051392 TG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281205 2 - 181584905 TG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287286 2 -   1764207 TG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292475 2 -  16742782 TG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594667 2 -  91010382 TG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190260 2 -    438239 TG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220004 2 -    514179 TG-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879175 1 + 204313951 -G-
i calJac3.chr2             I 1 I 1
s saiBol1.JH378155          16033302 1 +  16417988 -G-
i saiBol1.JH378155         I 1 I 1
s canFam3.chr34             11740646 2 +  42124431 -GG
i canFam3.chr34            I 4 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e cebCap1.NW_016108158v1      119229 123 +    298490 I

a score=531955.000000
s hg38.chr5_KI270793v1_alt     96031 62 +    126136 AGG-CCCTGGTCCAGCTCAGAGCCACTCA-CAGCGTGTG--CCAA-----AGCCACGTG-GGGAAACTGAGG
s panTro5.chr5             181362509 62 - 181907262 AGG-CCCTGGTCCAGCTCAGAGCCACTCA-CAGCGTGTG--CCAA-----AGCCACATG-GGGAAACTGAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081433 62 - 183735486 AGG-CCCTGGTCCAGCTCAGAGCCACTCA-CAGCGTGTG--CCAA-----AGCCACGTG-GGGAAACTGAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175115 62 +    698298 AGG-CCCTGGTCCAGCTCAGAGCCACTCA-CAGCGTGTG--CCAA-----AGCCACGTG-GGGAAACTGAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592790 63 - 121039945 AGGCCCCTGGTCCAGCTCAGAGCCACTCA-CAGCGTGTG--CCAA-----AGCCACGTG-GGGAAACTGAGG
i nomLeu3.chr6             C 0 T 59
s rheMac8.chr6             179548062 63 - 180051392 AGGCCCCTGGTCCAGCTCAGAGCCACTCA-CAGAGTGTG--CCAA-----AGCCACATG-GGGAAACTGAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281207 63 - 181584905 AGGCCCCTGGTCCAGCTCAGAGCCACTCA-CAGAGTGTG--CCAA-----AGCCACGTG-GGGAAACTGAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287288 63 -   1764207 AGGCCCCTGGTCCAGCTCAGAGCCACTCA-CAGAGTGTG--CCAA-----AGCCACATG-GGGAAACTGAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292477 63 -  16742782 AGGCCCCTGGTCCAGCTCAGAGCCACTCA-CAGAGTGTG--CCAA-----AGCCACATG-GGGAAACTGAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594669 63 -  91010382 AGGCCCCTGGTCCAGCTCAGAGCCACTCA-CAGAGTGTG--CCAA-----AGCCACATG-GGGAAACTGAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190262 63 -    438239 AGGCCCCTGGTCCAGCTCAGAGCCACTCA-CAGAGTGTG--CCAA-----AGCCACATG-GGGAAACTGAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220006 63 -    514179 AGGCCCCTCATCCAGCTCAGAGCCACTCA-CAGCGTGTG--CCAA-----AGCCACATG-AGGAAACTGAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879177 61 + 204313951 -AGCCCCAGGTCCAGCTCAGAGCCACTCACCAATATG----CCAC-----AGCCACACA-GGGAAACTGAGG
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16033304 64 +  16417988 -AGCCCCTGGTCCAGCTCAGAGCCGCTCA-CAGTGTGTGCACTGC-----AGCCACACA-GGGAAACTAAGG
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1      119352 62 +    298490 -AGGCCCTGGTCTAGCTCAGAGCCGCTCA-CAGCATGTG--CCAC-----AGCCACACA-GGGAAACTGAGG
i cebCap1.NW_016108158v1   I 123 C 0
s canFam3.chr34             11740648 63 +  42124431 ------AGGGTCCAGCTTGGAGCCCACCT-CTGTGTAAG--GCAGTGGGTGGCTCCTTGAGGGAAACTGAGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I

a score=339471.000000
s hg38.chr5_KI270793v1_alt     96093  57 +    126136 CCCTGGTCCAGCTCAGAGCTGCTCACAACATGTG---------------------------------------------------------------CCCCAATCACATAGGGGAAACTG
s panTro5.chr5             181362571  57 - 181907262 CCCTGGTCCAGCTCAGAGCTGCTCACAACATGTG---------------------------------------------------------------CCCCAATCACATAGGGGAAACTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081495  57 - 183735486 CCCTGGTCCAGCTCAGAGCTGCTCACAACATGTG---------------------------------------------------------------CCCCAATCACATAGGGGAAACTG
i panPan2.chr5             C 0 T 119
s nomLeu3.chr6             120592794  56 - 121039945 CCCTGGTCCAGCTCAGAGCCACTCACAGCGTGTG---------------------------------------------------------------CCAAAGCCACGT-GGGGAAACTG
i nomLeu3.chr6             T 59 C 0
s rheMac8.chr6             179548125  54 - 180051392 CCCTGGTCCAGCTCAGAGCCACTCACA---TGTG---------------------------------------------------------------CCACAACCACATAGGGGAAACTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281270  54 - 181584905 CCCTGGTCCAGCTCAGAGCCACTCACA---TGTG---------------------------------------------------------------CCACAACCACATAGGGGAAACTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287351  54 -   1764207 CCCTGGTCCAGCTCAGAGCCACTCACA---TGTG---------------------------------------------------------------CCACAACCACATAGGGGAAACTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292540  54 -  16742782 CCCTGGTCCAGCTCAGAGCCACTCACA---TGTG---------------------------------------------------------------CCACAACCACATAGGGGAAACTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594732  54 -  91010382 CCCTGGTCCAGCTCAGAGCCACTCACA---TGTG---------------------------------------------------------------CCACAACCACATAGGGGAAACTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190325  53 -    438239 CCCTGGTCCAGCTCAGAGCCACTCACA---TGTG---------------------------------------------------------------CCACAACCACAT-GGGGAAACTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220069  54 -    514179 CCCTGGTCCAGCTCAGAGCCACTCACA---TGTG---------------------------------------------------------------CCACAACCACATAGGGGAAACTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879238  56 + 204313951 CCCCGGTCCAGCTCAGAGACGCTCGCAGCATGTG---------------------------------------------------------------CCACAGCCACAC-AGGGAAACTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033368  58 +  16417988 CCCTGGTCCAGCTCAGAGCCGCTCACAGTGTGTG-------------------------------------------------------------CACTGCAGCCACAC-AGGGAAACTA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119414 119 +    298490 CCCTGGTCCAGCTCAGAGCCACTCACAGTGTGTGCACTGCAGCCACACAGGGAAACTGAGGTCCTGGTTCAGCTCAGAGCCACTCACAGTGTGTGCACTGCAGCCACAC-AGGGAAACTG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711   0 +  42124431 C
e gorGor5.CYUI01015805v1      175177   0 +    698298 C

a score=26481.000000
s hg38.chr5_KI270793v1_alt     96150 3 +    126136 AGG
s panTro5.chr5             181362628 3 - 181907262 AGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081433 3 - 183735486 AGG
i panPan2.chr5             T 119 C 0
s nomLeu3.chr6             120592850 3 - 121039945 AGG
i nomLeu3.chr6             C 0 T 59
s rheMac8.chr6             179548179 3 - 180051392 AGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281324 3 - 181584905 AGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287405 3 -   1764207 AGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292594 3 -  16742782 AGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594786 3 -  91010382 AGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190378 3 -    438239 AGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220123 3 -    514179 AGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879294 3 + 204313951 AGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033426 3 +  16417988 AGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119533 3 +    298490 AGG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711 0 +  42124431 C
e gorGor5.CYUI01015805v1      175177 0 +    698298 C

a score=161419.000000
s hg38.chr5_KI270793v1_alt     96153 21 +    126136 CCCTGGT-CGAGCTCAGAGCTG
s panTro5.chr5             181362631 21 - 181907262 CCCTGGT-CCAGCTCAGAGCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081436 21 - 183735486 CCCTGGT-CCAGCTCAGAGCCA
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120592794 21 - 121039945 CCCTGGT-CCAGCTCAGAGCCA
i nomLeu3.chr6             T 59 C 0
s rheMac8.chr6             179548182 21 - 180051392 CCCTGGT-CCAGCTCAGAGCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281327 21 - 181584905 CCCTGGT-CCAGCTCAGAGCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287408 22 -   1764207 CCCTGGTCCCAGCTCAGAGCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292597 21 -  16742782 CCCTGGT-CCAGCTCAGAGCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594789 21 -  91010382 CCCTGGT-CCAGCTCAGAGCTG
i chlSab2.chr4             C 0 T 91
s manLeu1.NW_012110441v1      190381 21 -    438239 CCCTGGT-CCAGCTCAGAGCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220126 21 -    514179 CCCTGGT-CCAGCTCAGAGCTG
i colAng1.NW_012118799v1   C 0 T 57
s calJac3.chr2             203879297 21 + 204313951 CCCTGAT-CCAGCTCAGAGCCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033429 21 +  16417988 CCCTGGT-CCAGCTCAGAGCCG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119536 21 +    298490 TCCTGGT-CCAGCTCAGAGCTG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=99027.000000
s hg38.chr5_KI270793v1_alt     96174 25 +    126136 CTCACAACATGTG---C--CCCAACCACAT
s panTro5.chr5             181362652 25 - 181907262 CTCACAACATGTG---C--CCCAACCACAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081457 25 - 183735486 CTCACAGCGTGTG---C--CAAAGCCACGT
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120592815 25 - 121039945 CTCACAGCGTGTG---C--CAAAGCCACGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548203 22 - 180051392 CTCA---CATGTG---C--CACAACCACAT
i rheMac8.chr6             C 0 T 113
s macFas5.chr6             181281348 22 - 181584905 CTCA---CATGTG---C--CACAACCACAT
i macFas5.chr6             C 0 T 113
s macNem1.NW_012012389v1      287430 22 -   1764207 CTCA---CATGTG---C--CACAACCACAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292618 22 -  16742782 CTCA---CATGTG---C--CACAACCACAT
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      190402 28 -    438239 TTCACAGCATGTGCCAC--CACAACCACAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220090 22 -    514179 CTCA---CATGTG---C--CACAACCACAT
i colAng1.NW_012118799v1   T 57 C 0
s calJac3.chr2             203879318 27 + 204313951 TTCACAGCATGTG---CCACATGGCCACAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033450 27 +  16417988 CTCACAGTGTGTG---CACTGCAGCCACAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119557 25 +    298490 CTCACAGCATGTA---C--CACAGCCACAC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e chlSab2.chr4              90594810 91 -  91010382 T
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=1365.000000
s hg38.chr5_KI270793v1_alt     96199 1 +    126136 A
s panTro5.chr5             181362677 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s colAng1.NW_012118799v1      220112 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879345 1 + 204313951 A
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033477 1 +  16417988 A
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119582 1 +    298490 A
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711 0 +  42124431 C
e nomLeu3.chr6             120592840 0 - 121039945 C
e manLeu1.NW_012110441v1      190430 0 -    438239 C
e chlSab2.chr4              90594810 91 -  91010382 T
e cerAty1.NW_012009470v1      292640 0 -  16742782 C
e macNem1.NW_012012389v1      287452 0 -   1764207 C
e macFas5.chr6             181281370 113 - 181584905 T
e rheMac8.chr6             179548225 113 - 180051392 T
e gorGor5.CYUI01015805v1      175177 0 +    698298 C
e panPan2.chr5             183081482 0 - 183735486 C

a score=64295.000000
s hg38.chr5_KI270793v1_alt     96200 13 +    126136 GGGGAAACTGAGG
s panTro5.chr5             181362678 13 - 181907262 GGGGAAACTGAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081482 13 - 183735486 GGGGAAACTGAGG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120592840 13 - 121039945 GGGGAAACTGAGG
i nomLeu3.chr6             C 0 T 59
s macFas5.chr6             181281257 13 - 181584905 GGGGAAACTGAGG
i macFas5.chr6             T 113 C 0
s macNem1.NW_012012389v1      287452 13 -   1764207 GGGGAAACTGAGG
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90594719 13 -  91010382 GGGGAAACTGAGG
i chlSab2.chr4             T 91 C 0
s colAng1.NW_012118799v1      220113 13 -    514179 GGGGAAACTGAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879346 12 + 204313951 -GGGAAACTGAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033478 12 +  16417988 -GGGAAACTAAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119583 12 +    298490 -GGGAAACTGAGG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e manLeu1.NW_012110441v1      190430  0 -    438239 C
e cerAty1.NW_012009470v1      292640  0 -  16742782 C
e rheMac8.chr6             179548225 113 - 180051392 T
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=156573.000000
s hg38.chr5_KI270793v1_alt     96213 47 +    126136 CCCTGGTCCAGCTCAGAGCTGCTCACAAC--ATGTG-----CCCCAATCACATA
s panTro5.chr5             181362691 47 - 181907262 CCCTGGTCCAGCTCAGAGCTGCTCACAAC--ATGTG-----CCCCAATCACATA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081495 47 - 183735486 CCCTGGTCCAGCTCAGAGCTGCTCACAAC--ATGTG-----CCCCAATCACATA
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120592794 46 - 121039945 CCCTGGTCCAGCTCAGAGCCACTCACAGC--GTGTG-----CCAAAGCCACGT-
i nomLeu3.chr6             T 59 C 0
s macFas5.chr6             181281270 44 - 181584905 CCCTGGTCCAGCTCAGAGCCACTCACA-----TGTG-----CCACAACCACATA
i macFas5.chr6             C 0 T 57
s macNem1.NW_012012389v1      287465 44 -   1764207 CCCTGGTCCAGCTCAGAGCCACTCACA-----TGTG-----CCACAACCACATA
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90594732 44 -  91010382 CCCTGGTCCAGCTCAGAGCCACTCACA-----TGTG-----CCACAACCACATA
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      220126 50 -    514179 CCCTGGTCCAGCTCAGAGCTGTTCACA----GCGTGGGCCACCACAGCCACATA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879358 49 + 204313951 CCCTGATCCAGCTCAGAGCCGCTCACAGCATGTGCA-----CTGCAGCCACACA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033490 46 +  16417988 CCCTGGTTCAGCTCAGAGCCGCTCACCA---ATGAA-----CCACAGCCACACA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119595 47 +    298490 CCCTGGTCCAGCTCAGAGCTGCTCACAGC--ATGCG-----CCACAGCCACACA
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e manLeu1.NW_012110441v1      190430  0 -    438239 C
e cerAty1.NW_012009470v1      292640  0 -  16742782 C
e rheMac8.chr6             179548225 113 - 180051392 T
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=59814.000000
s hg38.chr5_KI270793v1_alt     96260 10 +    126136 GGGGAAACTG
s panTro5.chr5             181362738 10 - 181907262 GGGGAAACTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081542 10 - 183735486 GGGGAAACTG
i panPan2.chr5             C 0 T 60
s nomLeu3.chr6             120592840 10 - 121039945 GGGGAAACTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548112 10 - 180051392 GGGGAAACTG
i rheMac8.chr6             T 113 C 0
s macFas5.chr6             181281257 10 - 181584905 GGGGAAACTG
i macFas5.chr6             T 57 C 0
s macNem1.NW_012012389v1      287509 10 -   1764207 GGGGAAACTG
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90594776 10 -  91010382 GGGGAAACTG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      220176 10 -    514179 GGGGAAACTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879407  9 + 204313951 -GGGAAACTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033536  9 +  16417988 -GGGAAACTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119642  9 +    298490 -GGGAAACTG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e manLeu1.NW_012110441v1      190430  0 -    438239 C
e cerAty1.NW_012009470v1      292640  0 -  16742782 C
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=16005.000000
s hg38.chr5_KI270793v1_alt     96270 3 +    126136 AGG
s panTro5.chr5             181362748 3 - 181907262 AGG
i panTro5.chr5             C 0 T 60
s panPan2.chr5             183081492 3 - 183735486 AGG
i panPan2.chr5             T 60 C 0
s nomLeu3.chr6             120592850 3 - 121039945 AGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548122 3 - 180051392 AGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281267 3 - 181584905 AGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287519 3 -   1764207 AGG
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90594786 3 -  91010382 AGG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      220186 3 -    514179 AGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879416 3 + 204313951 AGG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      119651 3 +    298490 AGG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e saiBol1.JH378155          16033545 0 +  16417988 C
e canFam3.chr34             11740711 0 +  42124431 C
e manLeu1.NW_012110441v1      190430 0 -    438239 C
e cerAty1.NW_012009470v1      292640 0 -  16742782 C
e gorGor5.CYUI01015805v1      175177 0 +    698298 C

a score=16500.000000
s hg38.chr5_KI270793v1_alt     96273 3 +    126136 CCC
s panTro5.chr5             181362691 3 - 181907262 CCC
i panTro5.chr5             T 60 C 0
s panPan2.chr5             183081495 3 - 183735486 CCC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120592853 3 - 121039945 CCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548125 3 - 180051392 CCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281270 3 - 181584905 CCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287522 3 -   1764207 CCC
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90594789 3 -  91010382 CCC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      220189 3 -    514179 CCC
i colAng1.NW_012118799v1   C 0 T 45
s calJac3.chr2             203879419 3 + 204313951 CCC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      119654 3 +    298490 CCC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e saiBol1.JH378155          16033545 0 +  16417988 C
e canFam3.chr34             11740711 0 +  42124431 C
e manLeu1.NW_012110441v1      190430 0 -    438239 C
e cerAty1.NW_012009470v1      292640 0 -  16742782 C
e gorGor5.CYUI01015805v1      175177 0 +    698298 C

a score=70745.000000
s hg38.chr5_KI270793v1_alt     96276 18 +    126136 TGGTCCAGCTCAGAGCTG
s panTro5.chr5             181362694 18 - 181907262 TGGTCCAGCTCAGAGCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081498 18 - 183735486 TGGTCCAGCTCAGAGCTG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120592856 18 - 121039945 TGGTCCAGCTCAGAGCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548128 18 - 180051392 TGGTCCAGCTCAGAGCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281273 18 - 181584905 TGGTCCAGCTCAGAGCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287525 18 -   1764207 TGGTCCAGCTCAGAGCTG
i macNem1.NW_012012389v1   C 0 T 57
s chlSab2.chr4              90594792 18 -  91010382 TGGTCCAGCTCAGAGCTG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203879422 18 + 204313951 CGGTCCAGCTCAGAGCTG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      119657 18 +    298490 TGGTCCAGCTCAGAGCTG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e saiBol1.JH378155          16033545  0 +  16417988 C
e canFam3.chr34             11740711  0 +  42124431 C
e manLeu1.NW_012110441v1      190430  0 -    438239 C
e cerAty1.NW_012009470v1      292640  0 -  16742782 C
e colAng1.NW_012118799v1      220192 45 -    514179 T
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=36705.000000
s hg38.chr5_KI270793v1_alt     96294 13 +    126136 CTCACAACATGTG
s panTro5.chr5             181362712 13 - 181907262 CTCACAACATGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081516 13 - 183735486 CTCACAACATGTG
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120592874 13 - 121039945 TTCACAGCATGCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548146 10 - 180051392 CTCACA---TGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281291 10 - 181584905 CTCACA---TGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287486 10 -   1764207 CTCACA---TGTG
i macNem1.NW_012012389v1   T 57 C 0
s chlSab2.chr4              90594810 13 -  91010382 TTCACAGCGTGTG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203879440 13 + 204313951 CTCACAGCATGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033545 10 +  16417988 ---ACAGTATGTG
i saiBol1.JH378155         C 0 T 90
s cebCap1.NW_016108158v1      119675 13 +    298490 CTCACAGCATGTA
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e manLeu1.NW_012110441v1      190430  0 -    438239 C
e cerAty1.NW_012009470v1      292640  0 -  16742782 C
e colAng1.NW_012118799v1      220192 45 -    514179 T
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=9690.000000
s hg38.chr5_KI270793v1_alt     96307 2 +    126136 CC
s panTro5.chr5             181362725 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081529 2 - 183735486 CC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120592887 2 - 121039945 CC
i nomLeu3.chr6             C 0 T 59
s rheMac8.chr6             179548156 2 - 180051392 CC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281301 2 - 181584905 CC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287496 2 -   1764207 CC
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90594823 2 -  91010382 CC
i chlSab2.chr4             C 0 T 60
s calJac3.chr2             203879453 2 + 204313951 CC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033465 2 +  16417988 CT
i saiBol1.JH378155         T 90 C 0
s cebCap1.NW_016108158v1      119688 2 +    298490 CC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711 0 +  42124431 C
e manLeu1.NW_012110441v1      190430 0 -    438239 C
e cerAty1.NW_012009470v1      292640 0 -  16742782 C
e colAng1.NW_012118799v1      220192 45 -    514179 T
e gorGor5.CYUI01015805v1      175177 0 +    698298 C

a score=70801.000000
s hg38.chr5_KI270793v1_alt     96309 21 +    126136 CCAACCACATAGGGGAAACTG
s panTro5.chr5             181362727 21 - 181907262 CCAATCACATAGGGGAAACTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081531 21 - 183735486 CCAATCACATAGGGGAAACTG
i panPan2.chr5             C 0 T 60
s nomLeu3.chr6             120592830 20 - 121039945 AAAGCCACGT-GGGGAAACTG
i nomLeu3.chr6             T 59 C 0
s rheMac8.chr6             179548158 21 - 180051392 ACAACCACATAGGGGAAACTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281303 21 - 181584905 ACAACCACATAGGGGAAACTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287498 21 -   1764207 ACAACCACATAGGGGAAACTG
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90594765 21 -  91010382 ACAACCACATAGGGGAAACTG
i chlSab2.chr4             T 60 C 0
s calJac3.chr2             203879455 20 + 204313951 GCAGCCACACA-GGAAAACTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033467 20 +  16417988 GCAGCCACACA-GGGAAACTA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119690 20 +    298490 ACAGCCACACA-GGGAAACTG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e manLeu1.NW_012110441v1      190430  0 -    438239 C
e cerAty1.NW_012009470v1      292640  0 -  16742782 C
e colAng1.NW_012118799v1      220192 45 -    514179 T
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=110615.000000
s hg38.chr5_KI270793v1_alt     96330 22 +    126136 AGGCCCTGGTCAAGCTCAGAGC
s panTro5.chr5             181362748 22 - 181907262 AGGCCCTGGTCCAGCTCAGAGC
i panTro5.chr5             C 0 T 120
s panPan2.chr5             183081492 22 - 183735486 AGGCCCTGGTCCAGCTCAGAGC
i panPan2.chr5             T 60 C 0
s nomLeu3.chr6             120592850 22 - 121039945 AGGCCCTGGTCCAGCTCAGAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548179 22 - 180051392 AGGCCCTGGTCCAGCTCAGAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281324 22 - 181584905 AGGCCCTGGTCCAGCTCAGAGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287519 22 -   1764207 AGGCCCTGGTCCAGCTCAGAGC
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90594786 22 -  91010382 AGGCCCTGGTCCAGCTCAGAGC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203879475 22 + 204313951 ACGCCCCGGTCCAGCTCAGAGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033487 22 +  16417988 AGGCCCTGGTTCAGCTCAGAGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119710 22 +    298490 AGGCCCTGGTCCAGCTCAGAGC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e manLeu1.NW_012110441v1      190430  0 -    438239 C
e cerAty1.NW_012009470v1      292640  0 -  16742782 C
e colAng1.NW_012118799v1      220192 45 -    514179 T
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=20919.000000
s hg38.chr5_KI270793v1_alt     96352 9 +    126136 TGCTCACAA
s panTro5.chr5             181362650 9 - 181907262 TGCTCACAA
i panTro5.chr5             T 120 C 0
s panPan2.chr5             183081514 9 - 183735486 TGCTCACAA
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120592872 9 - 121039945 CTTTCACAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548201 8 - 180051392 CACTCACA-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281346 8 - 181584905 CACTCACA-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287541 9 -   1764207 TGTTCACAG
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90594808 9 -  91010382 TGTTCACAG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203879497 9 + 204313951 CATTCACAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033509 9 +  16417988 CGCTCACCA
i saiBol1.JH378155         C 0 T 59
s cebCap1.NW_016108158v1      119732 9 +    298490 TGCTCACAG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711 0 +  42124431 C
e manLeu1.NW_012110441v1      190430 0 -    438239 C
e cerAty1.NW_012009470v1      292640 0 -  16742782 C
e colAng1.NW_012118799v1      220192 45 -    514179 T
e gorGor5.CYUI01015805v1      175177 0 +    698298 C

a score=29782.000000
s hg38.chr5_KI270793v1_alt     96361 8 +    126136 CATGTGCC
s panTro5.chr5             181362659 8 - 181907262 CATGTGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081523 8 - 183735486 CATGTGCC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120592881 8 - 121039945 CATGCGCC
i nomLeu3.chr6             C 0 T 36
s rheMac8.chr6             179548209 6 - 180051392 --TGTGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281354 6 - 181584905 --TGTGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287550 8 -   1764207 CGTGTGCC
i macNem1.NW_012012389v1   C 0 T 15
s chlSab2.chr4              90594817 8 -  91010382 CGTGTGCC
i chlSab2.chr4             C 0 T 15
s calJac3.chr2             203879506 8 + 204313951 CATGTGCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033459 8 +  16417988 TGTGCACT
i saiBol1.JH378155         T 59 C 0
s cebCap1.NW_016108158v1      119741 8 +    298490 CATGTGCC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711 0 +  42124431 C
e manLeu1.NW_012110441v1      190430 0 -    438239 C
e cerAty1.NW_012009470v1      292640 0 -  16742782 C
e colAng1.NW_012118799v1      220192 45 -    514179 T
e gorGor5.CYUI01015805v1      175177 0 +    698298 C

a score=18396.000000
s hg38.chr5_KI270793v1_alt     96369 10 +    126136 CCAACCACAT
s panTro5.chr5             181362667 10 - 181907262 CCAACCACAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081531 10 - 183735486 CCAATCACAT
i panPan2.chr5             C 0 C 0
s rheMac8.chr6             179548215 10 - 180051392 ACAACCACAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281360 10 - 181584905 ACAACCACAT
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203879514 10 + 204313951 ACAGCCACAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033467 10 +  16417988 GCAGCCACAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119749 10 +    298490 ACAGCCACAC
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e nomLeu3.chr6             120592889 36 - 121039945 T
e manLeu1.NW_012110441v1      190430  0 -    438239 C
e chlSab2.chr4              90594825 15 -  91010382 T
e cerAty1.NW_012009470v1      292640  0 -  16742782 C
e colAng1.NW_012118799v1      220192 45 -    514179 T
e macNem1.NW_012012389v1      287558 15 -   1764207 T
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=1365.000000
s hg38.chr5_KI270793v1_alt     96379 1 +    126136 A
s panTro5.chr5             181362677 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081541 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s calJac3.chr2             203879524 1 + 204313951 A
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033477 1 +  16417988 A
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119759 1 +    298490 A
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711 0 +  42124431 C
e nomLeu3.chr6             120592889 36 - 121039945 T
e manLeu1.NW_012110441v1      190430 0 -    438239 C
e chlSab2.chr4              90594825 15 -  91010382 T
e cerAty1.NW_012009470v1      292640 0 -  16742782 C
e colAng1.NW_012118799v1      220192 45 -    514179 T
e macNem1.NW_012012389v1      287558 15 -   1764207 T
e macFas5.chr6             181281370 0 - 181584905 C
e rheMac8.chr6             179548225 0 - 180051392 C
e gorGor5.CYUI01015805v1      175177 0 +    698298 C

a score=39171.000000
s hg38.chr5_KI270793v1_alt     96380 10 +    126136 GGGGAAACTG
s panTro5.chr5             181362678 10 - 181907262 GGGGAAACTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081542 10 - 183735486 GGGGAAACTG
i panPan2.chr5             C 0 I 2
s rheMac8.chr6             179548225 10 - 180051392 GGGGAAACTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281370 10 - 181584905 GGGGAAACTG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      292640 10 -  16742782 GGGGAAACTG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      190430 10 -    438239 GGGGAAACTG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203879525  9 + 204313951 -GGGAAACTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033478  9 +  16417988 -GGGAAACTA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119760  9 +    298490 -GGGAAACTG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e nomLeu3.chr6             120592889 36 - 121039945 T
e chlSab2.chr4              90594825 15 -  91010382 T
e colAng1.NW_012118799v1      220192 45 -    514179 T
e macNem1.NW_012012389v1      287558 15 -   1764207 T
e gorGor5.CYUI01015805v1      175177  0 +    698298 C

a score=11916.000000
s hg38.chr5_KI270793v1_alt     96390 3 +    126136 AGA
s panTro5.chr5             181362688 3 - 181907262 AGG
i panTro5.chr5             C 0 I 60
s panPan2.chr5             183081554 3 - 183735486 AGG
i panPan2.chr5             I 2 C 0
s rheMac8.chr6             179548235 3 - 180051392 AGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281380 3 - 181584905 AGG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      292650 3 -  16742782 AGG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      190440 3 -    438239 AGG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203879534 3 + 204313951 AGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033487 3 +  16417988 AGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119769 3 +    298490 AGG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711 0 +  42124431 C
e nomLeu3.chr6             120592889 36 - 121039945 T
e chlSab2.chr4              90594825 15 -  91010382 T
e colAng1.NW_012118799v1      220192 45 -    514179 T
e macNem1.NW_012012389v1      287558 15 -   1764207 T
e gorGor5.CYUI01015805v1      175177 0 +    698298 C

a score=117116.000000
s hg38.chr5_KI270793v1_alt     96393 21 +    126136 CCCTGGTCCAGCTCAGAGCCT
s panTro5.chr5             181362751 21 - 181907262 CCCTGGTCCAGCTCAGAGCCT
i panTro5.chr5             I 60 C 0
s panPan2.chr5             183081557 21 - 183735486 CCCTGGTCCAGCTCAGAGCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175177 21 +    698298 CCCTGGTCCAGCTCAGAGCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592853 21 - 121039945 CCCTGGTCCAGCTCAGAGCCT
i nomLeu3.chr6             T 36 C 0
s rheMac8.chr6             179548238 21 - 180051392 CCCTGGTCCAGCTCAGAGCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281383 21 - 181584905 CCCTGGTCCAGCTCAGAGCTG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      292653 21 -  16742782 CCCTGGTCCAGTTCAGAGCTG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      190443 21 -    438239 CCCTGGTCCAGCTCAGAGCTG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203879537 21 + 204313951 CCCCGGTCTAGCTCAGAGCTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033490 21 +  16417988 CCCTGGTTCAGCTCAGAGCCG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119772 21 +    298490 CCCTGGTCCAGCTCAGAGCCG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C
e chlSab2.chr4              90594825 15 -  91010382 T
e colAng1.NW_012118799v1      220192 45 -    514179 T
e macNem1.NW_012012389v1      287558 15 -   1764207 T

a score=34800.000000
s hg38.chr5_KI270793v1_alt     96414 4 +    126136 TTCA
s panTro5.chr5             181362772 4 - 181907262 TTCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081578 4 - 183735486 TTCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175198 4 +    698298 TTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592874 4 - 121039945 TTCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548259 4 - 180051392 TTCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281404 4 - 181584905 TTCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287543 4 -   1764207 TTCA
i macNem1.NW_012012389v1   T 15 C 0
s cerAty1.NW_012009470v1      292674 4 -  16742782 TTCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594810 4 -  91010382 TTCA
i chlSab2.chr4             T 15 C 0
s manLeu1.NW_012110441v1      190464 4 -    438239 TTCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220147 4 -    514179 TTCA
i colAng1.NW_012118799v1   T 45 C 0
s calJac3.chr2             203879558 4 + 204313951 CTCA
i calJac3.chr2             C 0 I 31
s saiBol1.JH378155          16033511 4 +  16417988 CTCA
i saiBol1.JH378155         C 0 I 40
s cebCap1.NW_016108158v1      119793 4 +    298490 CTCA
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711 0 +  42124431 C

a score=9100.000000
s hg38.chr5_KI270793v1_alt     96418 1 +    126136 C
s panTro5.chr5             181362776 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081582 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175202 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592878 1 - 121039945 C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548263 1 - 180051392 C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281408 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287547 1 -   1764207 C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292678 1 -  16742782 C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594814 1 -  91010382 C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190468 1 -    438239 C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220151 1 -    514179 C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879593 1 + 204313951 C
i calJac3.chr2             I 31 C 0
s cebCap1.NW_016108158v1      119797 1 +    298490 C
i cebCap1.NW_016108158v1   C 0 I 39
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e saiBol1.JH378155          16033515 40 +  16417988 I
e canFam3.chr34             11740711 0 +  42124431 C

a score=52066.000000
s hg38.chr5_KI270793v1_alt     96419 11 +    126136 AGCGTGCATCA
s panTro5.chr5             181362777 11 - 181907262 AGCGTGCATCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081583 11 - 183735486 AGCGTGCATCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175203 11 +    698298 AGCGTGCACCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592879 11 - 121039945 AGCATGCGCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548264 11 - 180051392 AGCGTGTGCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281409 11 - 181584905 AGCGTGTGCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287548 11 -   1764207 AGCGTGTGCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292679 11 -  16742782 AGAGTGTGCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594815 11 -  91010382 AGCGTGTGCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190469 11 -    438239 AGCATGTGCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220152 11 -    514179 AGCGTGGGCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879594  8 + 204313951 AGCATGTG---
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e cebCap1.NW_016108158v1      119798 39 +    298490 I
e saiBol1.JH378155          16033515 40 +  16417988 I
e canFam3.chr34             11740711  0 +  42124431 C

a score=82267.000000
s hg38.chr5_KI270793v1_alt     96430 10 +    126136 CCACAGCCGA
s panTro5.chr5             181362788 10 - 181907262 CCACAGCCGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081594 10 - 183735486 CCACAGCCGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175214 10 +    698298 CCACAGCCAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592890 10 - 121039945 CCACAGCCAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548275 10 - 180051392 CCATAGCcac
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281420 10 - 181584905 CCATAGCCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287559 10 -   1764207 CCATAGCCAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292690 10 -  16742782 CCACAGCCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594826 10 -  91010382 CCACAGCCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190480 10 -    438239 CCACAGCcac
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220163 10 -    514179 CCACAGCCAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879602 10 + 204313951 CCACAGCCAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033555 10 +  16417988 CCACAGCCAC
i saiBol1.JH378155         I 40 C 0
s cebCap1.NW_016108158v1      119837 10 +    298490 CCACAGCCAC
i cebCap1.NW_016108158v1   I 39 C 0
e aotNan1.NW_018503740v1    25446585 119 -  25620257 I
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C

a score=150281.000000
s hg38.chr5_KI270793v1_alt     96440 15 +    126136 AT-GGGGAAAGTGAGG
s panTro5.chr5             181362798 15 - 181907262 AT-GGGGAAAGTGAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081604 15 - 183735486 AT-GGGGAAAGTGAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175224 15 +    698298 AC-GGGGAAAGTGAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592900 15 - 121039945 AA-GGGGAAACTGAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548285 15 - 180051392 at-ggggaaactgagg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281430 15 - 181584905 AT-GGGGAAACTGAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287569 15 -   1764207 AT-GGGGAAACTGAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292700 15 -  16742782 AT-GGGGAAACTGAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594836 15 -  91010382 AT-GGGGAAACTGAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190490 15 -    438239 at-ggggaaactgagg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220173 16 -    514179 ATAGGGGAAACTGAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879612 15 + 204313951 AT-GGGGAAACTGAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033565 15 +  16417988 AT-GGGGAAACTGAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119847 15 +    298490 AT-GGGGAAACTGAGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25446704 15 -  25620257 AT-GGGGAAACTGAGG
i aotNan1.NW_018503740v1   I 119 C 0
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740711  0 +  42124431 C

a score=2821509.000000
s hg38.chr5_KI270793v1_alt     96455 295 +    126136 CCCGTCGATGTCCAGGAGACCTTGCCCAAGCCTGGTGAGGACCTGGGCCTAGCCAGCTCCAGAGTTTTCTTCTTCTCCCCACGGCAGGCATCTGACCAGAAATACCAGGGATCTCCCGGCCTGTCTGAGTCAAAGCCGAAGCTGCAGGATGGGGCAGAGTGGAGAGCTGAGCGCTCCTGGGGAGGGACAGATCTGGGATCCAGCGTGAGCTAAGATTGACTGAACAGCTGCCTGAGAGAGCAATTCCGTCCATCTCCAGCTGTTTCTATGGAGGCAGAGTGGAAGGGCTGTGGGG
s panTro5.chr5             181362813 295 - 181907262 CCCGTCGATGTCCAGGAGACCTTGCCCAAGCCTGGTGAGGACCTGGGCCTAGCCAGCTCCAGAGTTTTCTTCTTCTCCCCACAGCAGGCATCTGACCAGAAATACCAGGGATCTCCCGGCCTGTCTGAGTCAAAGCCGAAGCTGCAGGATGGGGCAGAGTGGAGAGCTGAGCGCTCCTGGGGAGGGACAGATCTGGGATCCAGCGTGAGCTAAGATTGACTGAACAGCTGCCTGAGAGAGCAATTCCGTCCATCTCCAGCTGTTTCTATGGAGGCAGAGTGGAAGGGCTGTGGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081619 295 - 183735486 CCCGTCGATGTCCAGGAGACCTTGCCCAAGCCTGGTGAGGACCTGGGCCTAGCCAGCTCCAGAGTTTTCTTCTTCTCCCCACAGCAGGCATCTGACCAGAAATACCAGGGATCTCCCGGCCTGTCTGAGTCAAAGCCGAAGCTGCAGGATGGGGCAGAGTGGAGAGCTGAGCGCTCCTGGGGAGGGACAGATCTGGGATCCAGCGTGAGCTAAGATTGACTGAACAGCTGCCTGAGAGAGCAATTCCGTCCATCTCCAGCTGTTTCTATGGAGGCAGAGTGGAAGGGCTGTGGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175239 291 +    698298 CCCGTCGATGTCCAGGAGACCTTGCCCAAGCCTGGTGGGGACCTGGGCCTAGCCAGCTCCAGAGTTTTCTTCTTCTCCCCACAGCAGGCATCTGACCAGAAATACCAGGGATCTCCCGGC----TTGAGTCAAAGCCGAAGCTGTAGGATGGGGCAGAGTGGAGAGCTGAGCGCTCCTGGGGAGGGATGGATCTGGGATCCAGCGTGAGCTAAGATTGACTAAACAGCTGCCTGAGAGAGCAATTCCATCCATCTCCAGCTGTTTCTATGGAGGCAGAGTGGAAGGGCTGTGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120592915 288 - 121039945 CCCGTTGATGTCC---AGATCTTGCCCAAGGCTGGTGAGGA-CTGAGCCTAGCCAGCTCCAGAGTT---TTCTTCTCCCCACAGCAGGCATCTGACCAGAAATACCAGGGATCTCCCGGCCTGTCTGGGTCAAAGCCGAAGCCACAGGATGGGGCAGAGTGGAGAGCTGAGCGCTCCTGGGGAGGGACGGATCTGGGATCCAGTGTGAGCTAAGATTGACTGAACAGCTGCCTGAGAGAGCAATTCTGTCCATCTCCAGCTGTTTCTATGGCGGCAGAGTAAAAGGGCTGTGGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548300 295 - 180051392 cccatcaatgtccaagagatcttgcccaaggCTGGTGGGAACCTGGGCCTAGCCAGCTCCAGAATTTTCTTCTTCTCCCCATAGCAGGCATCTGACCAGAAATATCAGGGATCTCCCGGCCTGTCTGGGTCAAAGCCGAAGCCACAGGATGGGGCAGAGTGGAGAGCTGAGCGTTCCTGGGAAGGGATGGATCTGGGATCCAGTGTGAGCTAAGATTGACTGAACAGCTGCCTGAGAGAGCAATTCTCTCCATCTCCAGCTGTTTCTATGGAGGCAGAGTGAAAGGGCTGTGGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281445 295 - 181584905 CCCGTCAATGTCCAAGAGATCTTGCCCAAGGCTGGTGGGAACCTGGGCCTAGCCAGCTCCAGAATTTTCTTCTTCTCCCCATAGCAGGCATCTGACCAGAAATATCAGGGATCTCCCGGCCTGTCTGGGTCAAAGCCGAAGCCACAGGATGGGGCAGAGTGGAGAGCTGGGCGCTCCTGGGAAGGGATGGATCTGGGATCCAGTGTGAGCTAAGATTGACTGAACAGCTGCCTGAGAGAGCAATTCTCTCCATCTCCAGCTGTTTCTATGGAGGCAGAGTGAAAGGGCTGTGGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287584 295 -   1764207 CCCGTCAATGTCCAAGAGATCTTGCCCAAGGCTGGTGGGAACCTGGGCCTAGCCAGCTCCAGAATTTTCTTCTTCTCCCCATAGCAGGCATCTGACCAGAAATATCAGGGATCTCCTGGCCTGTCTGGGTCAAAGCCGAAGCCACAGGATGGGGCAGAGTGGAGAGCTGAGCGCTCCTGGGAAGGGATGGATCTGGGATCCAGTGTGAGCTAAGACTGACTGAACAGCTGCCTGAGAGAGCAATTCTCTCCATCTCCAGCTGTTTCTATGGAGGCAGAGTGAAAGGGCTGTGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      292715 295 -  16742782 CCCGTCAATGTCCAAGAGATCTTGCCCAAGGCTGGTGGGAACCTGGGCCTAGCCAGCTCCAGAATTTTCTTCTTCTCCCCATAGCAGGCATCTGACCAGAAATATCAGGGATCTCCCGGCCTGTCTGGGTCAAAGCCGAAGCCACAGGATGGGGCAGAGTGGACAGCTGAGCGCTCCTGGGAAGGGATGGATCTGGGATCCAGCGTGAGCTAAGATTGACTGAACAGCTGCCTGAGAGAGCAATTCTTTCCATCTCCAGCCGTTTCTATGGAGGCAGAGTGAAAGGGCTGTGGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90594851 295 -  91010382 CCCGTCAATGTCCAAGAGATCTTGCCCAAGGCTGGTGGGAACCTGGGCCTAGCCATCTCCAGAATTTTCTTCTTCTCCCCATAGCAGGCATCTGACCAGAAATGTCAAGGATCTCCCGGCCTGTCTGGGTCAAAGCCGAAGCCACAGGATGGGGCAGAGTGGAGAGCTGAGCGCTCCTGGGAAGGGATGGATCTGGGATCCAGCGTGAGCTAAGATTGACTGAACAGCTGCCTGAGAGAGCAATTCTCTCCATCTCCAGCTGTTTCTATGGAGGCAGAGTGAAAGGGCTGTGGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190505 295 -    438239 cccatcaatgtccaagagatcttgcccaaggCTGGTGGGAACCTGGGCCTAGCCAGCTCCAGAATTTTCTTCTTCTCCCCATAGCGGGCATCTGACCAGAAATATCAGGGATCTCCCGGCCTGTCTGGGTCAAAGCCGAAGCCACAGGATGGGGCAGAGTGGAGAGCTGAGCGCTCCTGGGAAGGGATGGATCTGGGATCCAGCGTGAGCTAAGATTGACTGAACAGCTGCCTGAGAGAGCAATTCTCTCCATCTCTAGTTGTTTCTATGGAGGCAGAGTGAAAGGGCTGTGGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220189 295 -    514179 CCCATCAATGTCCAAGAGATCTTGCCCAAGGCTGGTGGGAACCTGGGCCTAGCCAGCTCCAGAATTTTCTTCTTCTCCCCATAGCAGGCATCTGACCAGAAATATCAGAGATCTCCCGGCCTGTCTGGGTCAAAGCTGAAGCCACAGGATGGGGCAGAGTGGAGAGCTGAGCGCTCCTGGGGAGGGATGGATCTGGGATCCAGCATGAGCTAAGATTGACTGAATAGCTGCCTGAGAGAGCAATTCTCTCCATCTCCAGCTGTTTCTATGGAGGCAGAGTGAAAGGGCTGTGGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879627 288 + 204313951 CCAGTCAATGTACAGGAGATCTTGCCCAAAGCTGGTGGGGATCTGGGCCTGGCCAGCTCTGGAATT---TTCTTCTCCCCACAGCAGACATCTGACCAGAAATACCAGGGACCTTCCGGCCTGCCTGGGTCAAAGCTGAAGCCACAGGATGTGGTAGAGTAAAGAGCTGAGCGCTCCTGGGGAGGGACGGATCTGGGATCCAGCGTGAGCTAAGACTGACTGAACAGCTGCCTCTGAGAGCCATTCT----GTCTCCAGCTGTGTCTATGGAGGTACAGTGAAAGGGCTGTGGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033580 259 +  16417988 CCAGTCAATGTACAAGAGATCTTGCCCAA--------------------------------GAGTT---TTCTTCTCCCCACAGCAGACGTCTGACCAGAAGCACCAGGGGCCTTCCGGCCTGTCTGGGTCAAAGCTGAAGCCACAGGATGTGGT-GAGTGAAGAGCTGAGTGCTCCTGTGGAAGGACGGACCCGGGACCCAGCGTGAGCTAAGACTCTCTCAACAGCTGCCTCGGAGAGTCATTCTGTCCGTCTCTAGCTGTGTCTATGGAGGTACGGTGAAAGGGCTGTGGGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      119862 291 +    298490 CCAGTCAATGTACAGGAGATCTTGTCCAAGGCTGGTGGGGACCTGGACCTGGCCAGCTCTGGAGTT---TTCTTCTCCCCACAGCAGACGTCTGACCAGAAGCACCAGGGACTTTCCGGCCTGTCTGGGTCAAAGCTGAAGCCACAGGATGTGGT-GAGTGAAGAGCTGAGCGCTCCTGGGGCGGGACGGACCCGGGGTCCAGCGCGAGCTACGATTGACTGAACAGCTGCTTCAGAGAGCCCTTCTGTCCGTCTCCAGCTGTGTCAGTGGGGGTACAGTCAAAGGGCTGTGGGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25446719 291 -  25620257 CCAGTCAATGTACAGGAGATCTTGCCCAAGGCTGGTGGGGACCTGGGCCTGGCCAGCTCTGGAGTT---TTCTTCTCCCCACAGCAGACGTCTGACCAGAAATACCAGGGACCTT-CGGCCTGTCTGGGTCAAAGCTGAATCCACAGGATGTGGTGGAGTGAAGAGCTGAGCGCTCCTGGGGAGGGACGGATCTGGGATCCAGCGTGAGCTAAGATTGACTGAACAGCTGCCTCAGAGAGCCACTCCGTCCGTCTCCAGCTGCGTCTACGGAGGTACAGTGAAAGGGCTGTGGGG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11740711 225 +  42124431 CTTATCTGTATCAGCAAGATCTTGGCCGAGGCAGGCGAGGGTCT-CACCTGGC----------------ATCT----CTCATCTGAGGCTTCTGACCAGAACTACCTGGGGCAGCCAGGCTTTCCTGGTCTA-------------------------AGTGGA---------------GGTGAGGG-------TAGGAGCAA--CTGAGCTTGGATGGGGTCAACAACAGGCTGGTTGATCCATTCCGTCCTTCTTCAGTAAGGTGTCCAGGGCCAGAGCACAGAGGTCTCGGAG
i canFam3.chr34            C 0 I 354
e otoGar3.GL873745           1900762 350 -   2165740 I

a score=135298.000000
s hg38.chr5_KI270793v1_alt     96750 17 +    126136 CAGGCACAGAGGTGAC-C
s panTro5.chr5             181363108 17 - 181907262 CAGGCACAGAGGTGAC-C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081914 17 - 183735486 CAGGCACAGAGGTGAC-C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175530 17 +    698298 CAGGCACAGAGGTGAC-C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120593203 17 - 121039945 CAGGCACAGAGGTGAC-C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548595 17 - 180051392 CAGGCACAGAGGTGAC-C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281740 17 - 181584905 CAGGCACAGAGGTGAC-C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287879 17 -   1764207 CAGGCACAGAGGTGAC-C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      293010 17 -  16742782 CAGGCACAGAGGTGAC-C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90595146 17 -  91010382 CAGGCACAGAGGTGAC-C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190800 17 -    438239 CAGGCACAGAGGTGAC-C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220484 17 -    514179 CAGGCACAGAGGTGAC-C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879915 16 + 204313951 CAGGCGCAGAGCTGAC--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033839 16 +  16417988 CAGGCGCAGAGCTGAC--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      120153 17 +    298490 CAGGCGCAGAGCTGACC-
i cebCap1.NW_016108158v1   C 0 I 724
s aotNan1.NW_018503740v1    25447010 12 -  25620257 CAGGCGCAGAGC------
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740936 354 +  42124431 I

a score=435023.000000
s hg38.chr5_KI270793v1_alt     96767 63 +    126136 CCAGCCAGAGCCACCCCCA---CTGGCAGGTGGGAATGCCCGCCGGTGAATAGCGGCAAGTGTGAT
s panTro5.chr5             181363125 63 - 181907262 CCAGCCAGAGCCACCCCCA---CTGGCAGGTGGGAATGCCCGCCGGTGAATAGCGGCAAGTGTGAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081931 63 - 183735486 CCAGCCAGAGCCACCCCCA---CTGGCAGGTGGGAATGCCCGCCGGTGAATAGCGGCAAGTGTGAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175547 61 +    698298 CCAG-CAGAGCCA-CCCCA---CTGGCAGGTGGGAATGCCCGCCTGTGAATAGCGGCAAGTGTGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120593220 63 - 121039945 CCAGCCAGAGCCACCCCCA---CTGGCAGGTGGGAATGCCCGCTGGTGAATGTCGGCAAGAGTGAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179548612 63 - 180051392 CCAACCAGAGCCACCTCCA---CTGGCCAGTGGGAATGCCCACCGGTGAACAGCGGCAAGAGTGAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281757 63 - 181584905 CCAACCAGAGCCACCTCCA---CTGGCCAGTGGGAATGCCCACCGGTGAACAGCGGCAATAGTGAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287896 63 -   1764207 CCAACCAGAGCCACCTCCA---CTGGCCAGTGGGAATGCCCACCGGTGAACAGCGGCAAGAGTGAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      293027 63 -  16742782 CCAACCAGAGCCACCTCCA---CTGGCCAGTGGGAATGCCCACTGGTGAACAGCGGCAAGAGTGAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90595163 63 -  91010382 CCAACCAGAGCCACCTCTA---CTGGCCAGTGGGAATGCCCACCGGTGAACAGCGGCAAGAGTGAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190817 63 -    438239 CCAACCAGAGCCACCTCCA---CTGGCCAGTGGGAATGCCCACCGGTGAACAGCGGCAAGAGTGAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220501 63 -    514179 CCAACCAGAGCCACCTCCA---CTGGCCAATGGGAATGCCCGCCGGTGAACAGCGGCAAGAGTGAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879931 63 + 204313951 CTGGCCAAAGCCACCACCC---CTGGCAGATGGGAATGCTGGCTGGTGAACAGCAGCAAGAGTGAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033855 66 +  16417988 CTGGCCAAAGCCACCACCCCTGCTGGCAGGTGGGAATGCTGGCTGGTGAACAGCAGCAACAGGGAC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25447022 37 -  25620257 ----------------------------GATGGGAATGCTGGCTGGTGAGCAGCAGCAAGTGGGT-
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1900762 350 -   2165740 I
e cebCap1.NW_016108158v1      120170 724 +    298490 I
e canFam3.chr34             11740936 354 +  42124431 I

a score=2443582.000000
s hg38.chr5_KI270793v1_alt     96830 266 +    126136 GGTGCCTGCCCACT-GCACACCTGGTGCACACACGTGTCAACCACCTAGAGCGTGCCCAGCCCTGTAGCCAAGGGACTCACCACCCTTGCTCTGC---------GGGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCAAGTGAGGGCAGTGCCGGCTCGGCCAGCCACCTGCTCCAGGTCTCAGCTCCCGCAGCTCCACCT-GACTTCCCGGTGTTTCTAGGGGT-------------------CTGAGGCCCCACACCAGCACCAGCCTCCAGCTAGTGGCGAGGGCTGT
s panTro5.chr5             181363188 266 - 181907262 GGTGCCTGCCCACT-GCACACCTGGTGCACACACGTGTCAACTACCTAGAGCGTGCCCAGGCCTGTGGCCAAGGGACTCACCACCCTTGCTCTGC---------GGGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCAAGTGAGGGCAGTGCCGGCTCGGCCAGCCACCTGCTCCAGGTCTCAGCTCCTGCAGCTCCACCT-GACTTCCCAGTGTTTCTAGGGGT-------------------CTGAGGCCCCACACCAGCACCAGCCTCCAGCTAGTGGCGAGGGCTGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183081994 266 - 183735486 GGTGCCTGCCCACT-GCACACCTGGTGCACACACGTGTCAACCACCTAGAGCGTGCCCAGGCCTGTGGCCAAGGGACTCACCACCCTTGCTCTGC---------GGGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCAAGTGAGGGCAGTGCCGGCTCGGCCAGCCACCTGCTCCAGGTCTCAGCTCCCGCAGCTCCACCT-GACTTCCCGGTGTTTCTAGGGGT-------------------CTCAGGCCCCACACCAGCACCAGCCTCCAGCTAGTGGCGAGGGCTGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175608 281 +    698298 GGTGCCTGCCCACC-GC---CACGGTGCACACACGTGTCAACCACCTAGAGCGTGCCCAGCCCTGTGGCCAAGGGACTCACCACCCTCGCTCTGC----------GGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCAAGTGAGGGCAGTGCCGGCTCGGCCGGCCACCTGCTCCAGGTCTCAGCCCCCGCAGCTCCACCT-GACTTCCCGGTGTTTCTAGGGGTCTGAGGCCCGGGGGTGGGCCTGAGGCCCCACACCAGCACCAGCCTCCAGCTAGTGGCGAGGGCTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120593283 294 - 121039945 GGTGCCTGCCCGCC-GCACAACTGGTGCACACACGTGTCGACCACCTAGAGCGTGCCCAGCCCTGTGGCCAAGGGACTCACCACCCTCGCTCTGCGGGGGGGCGGGGGGGTG-TCCAAGGCACAG-TAAGACTGGTCCATGCCGAGTGAGGGCAGTGCGGGCTCGGCCGGCCACCTGCTCCAGGTCTCAGCTCCCGCAGCTCTCCTTGGAGTTCCTGGTGTTTCTAGGGGTCTGAGGCCCGGGGGTGGGCCTGAAGCCCCTCACCAGCACCAGCCTCCATCTAGTGGCGAGGCTTGT
i nomLeu3.chr6             C 0 M 100
s rheMac8.chr6             179548675 285 - 180051392 GGTGCCTGCCCGCC-ACACACCCAGTGCACACACGTGTCGACTACCTAGAGCATGCCCAGCCCTGTGACCAAGGGACTCACCACCCTCGCTCTGT---------GGGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCGAGTGAGGGCAGTGCGAGCTCAGCCAGCCACCTGCTCCAGGTCTCAGCTCCTGCAGCTCCACCT-GACTTCCGGGTGTTTCTAGGGGTCTGAGGACCGGGGGTGGGCCTGAGGCCCCTCACCAGCACCAGCCTCAGGCTAGTGGCGAGGGCTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181281820 285 - 181584905 GGTGCCTGCCCGCC-ACACACCCAGTGCACACACGTGTCGACTACCTAGAGCATGCCCAGCCCTGTGACCAAGGGACTCACCACCCTCGCTCTGT---------GGGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCGAGTGAGGGCAGTGCGAGCTCAGCCAGCCACCTGCTCCAGGTCTCAGCTCCTGTAGCTCCACCT-GACTTCCGGGTGTTTCTAGGGGTCTGAGGACCGGGGGTGGGCCTGAGGCCCCTCACCAGCACCAGCCTCAGGCTAGTGGCGAGGGCTGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      287959 285 -   1764207 GGTGCCTGCCCGCC-ACACACCCAGTGCACACACGTGTCGACTACCTAGAGCATGCCCAGCCCTGTGACCAAGGGACTCACCACCCTCGCTCTGT---------GGGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCGAGTGAGGGCAGTGCGAGCTCAGCCAGCCACCTGCTCCAGGTCTCAGCTCCTGCAGCTCCACCT-GACTTCCGGGTGTTTCTAGGGGTCTGAGGACCAGGGGTGGGCCTGAGGCCCCTCACCAGCACCAGCCTCAGGCTAGTGGCGAGGGCTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      293090 285 -  16742782 GGTGCCTGCCCGCC-ACACACCCAGTGCACACACGTGTCGACTACCTAGAGCGTGCTCGGCCCTGTGACCAAGGGACTCACCACCCTCGCTCTGT---------GGGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCGAGTGAGGGCAGTGCGAGCTCAGCCGGCCACCTGCTCCAGGTCTCAGCTCCTGCAGCTCCACCT-GACTTCTGGGTGTTTCTAGGGGTCTGAGGACTGGGGGTGGGCCTGAGGCCCCTCACCAGCACCAGCCTCAGGCTAGTGGCGAGGGCTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90595226 284 -  91010382 GGTGCCTGCCTGCC-GCACA-CCAGTGCACACACGTGTCGACTACCTAGAGCGTGCCCGGCCCTGTGACCAAGGGACTCACCACCCTCGCTCTGT---------GGGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCGAGTGAGGGCAGTGCGAGCTTTGCCAGCCACATGCTCCAGATCTCAGCTCCTGCAGCTCCACCT-GACTTCCGGGTGTTTCTAGGGGTCTGAGGACCGGGGGTGGGCCTGAGGCCCCTCACCAGCACCAGCCTCAGGCTAGTGGCGAGGGCTGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      190880 285 -    438239 GGTGCCTGCCCGCC-ACACACCCAGTGCACACACGTGTCGACTACCTAGAGCGTGCTCGGCCCTGTGACCACGGGACTCACCACCCTCGCTCTGT---------GGGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCGAGTGAGGGCAGTGCGAGCTCAGCCGGCCACCTGCTCCAGGTCTCAGCTCCTGCAGCTCCACCT-GACTTCTGGGTGTTTCTAGGGGTCTGAGGACCGGGGGTGGGCCTGAGGCCCCTCACCAGCACCAGCCTCAGGCTAGTGGCGAGGGCTGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220564 285 -    514179 GGTGCCTGCCTGCC-GCACACCCGGTGCACACGTGTGTCAACTACGTAGAGCATGCCGGGCCCTGTGACCAAGGGACTCACCACCCTCACTCTGT---------GGGGGGTGCTCCAAGGCACAG-TAAGACTGGTCCATGCCGAGTAAGGGCAGTGCAAGCTCAGCCGGCCACCTGCTCCAGGTCTCAGCTCCTGCAGCTCCACCT-GACTTCCAGGTGTTTCTAGGGGTCTGAGGACCTGGGGTGGGCCTGAGGCCCCTCACCAGCACCAGGCTCAGGCTAGTGGCGAGGGCTGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203879994 277 + 204313951 GGTGCCTGCCCCCCTGTACACCTGGCACACATGCGCATTGACCACCTGGAGCATGCCCAGCCCTGTGGCTAGGGGACTTACCGCCCTTGCTCTGC---------GGGGGGTGCTGGAAGGCACAG-TAAGGCTGGGCCACACCGAGTGAGGGCAGCGCCT--------GGCAGCCTGCTCCCAGTCTCAGCTCCTGCAGCTCCACCT-GACTTCTGGGTGTTTCTAGGGGTCTGAAGACCATGGGTGGCCCTGAGGCCCCTCACCAGCACCAGCCTTGGGCCATTGGTGACG-CTGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16033921 276 +  16417988 GGTGCCTGCCCCCCTGCACACCTGGCACACACGCACATCGACCACCTGGAGCATGCCTAGCCCTGTGGCTGAGGGACTTACCACCCTCACTCTGT---------GAGGGGTGCTGGAAGGCACAG-TCAGGCTGGGCCACACCGAGTGAGGGCAGTGTCTGCT----CGGCTGCCTGCTCC--GTCTCAGCTCCCGCAGCTCCACCT-GACTTCTGGGCGTTTCTAGGGGTCCGAGGACCGCAGGT---CCTGAGGCCCCTTGCCAGCACCGGCCTCGGGCCAGTAGCAAGG-CTGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      120894 281 +    298490 GGTGCCTGCCCCCCTGCACACCTGGCGCACATGCGCGCTGACCGCCTGGGGCATACCCAGCCCTGTGGCTTAGGGACTTACCACCCTCGCTCTGT---------GGGGGGTGCTGGAAGGCACAG-TAAGGCTGGGCCACGCCGAGTGAGGGCAGTGCCTGCT----CGGCTGCCTGCTCCCAGTCTCAGCTCCCGCAGCTCCACCT-GACTTCTGGGTGTTTCTAGGCATCTGAGGACCACGGGTGGCACGGAGGCCCCTTGCCAGCACTGGCCTCGGGCCAGTGGCAAGG-CTGC
i cebCap1.NW_016108158v1   I 724 C 0
s aotNan1.NW_018503740v1    25447059 268 -  25620257 GGCGCCGGCCCCCC-GCACACCTGGCGCACGTGCGCATCGACCACCTGGAGCATGCCCAGCCCTGTGGCCGAGGGACTTACCGCCCTCGCTCTGC---------G-GGGGTGCTGGAAGGCACAGTTAAGGCTGGGCCACACCAAGTGAGGGCAGTGCCT----------------GCTCCCAGTCTCAGCTCCCTCAGCTCCACCT-GACTTCTGGGTGTTTCTAGCGGTCTGAGGACCACAAGTGGCCCTGAGGCCCCCCACCAGCACTGGCCTCGGGCCGGTGGCGAGG-CTGC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740936 354 +  42124431 I

a score=112943.000000
s hg38.chr5_KI270793v1_alt     97096 13 +    126136 CGCTGTGTCTCCA
s panTro5.chr5             181363454 13 - 181907262 CACTGTGTCTCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183082260 13 - 183735486 CACTGTGTCTCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175889 13 +    698298 CTCTGTGTCTCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179548960 13 - 180051392 TGCTGTGTCTCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181282105 13 - 181584905 TGCTGTGTCTCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      288244 13 -   1764207 TGCTGTGTCTCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      293375 13 -  16742782 TGCTGTGTCTCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90595510 13 -  91010382 TGCTATGTCTCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      191165 13 -    438239 TGCTGTGTCTCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220849 13 -    514179 TGCTGTGTCTCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203880271 13 + 204313951 CACTGTGTCTCCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16034197 13 +  16417988 CACTGTGTCTCCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      121175 13 +    298490 CACTGTGTCTCCA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25447327 13 -  25620257 CACTGTGTCTCCA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1900762 350 -   2165740 I
e canFam3.chr34             11740936 354 +  42124431 I
e nomLeu3.chr6             120593577 100 - 121039945 M

a score=507654.000000
s hg38.chr5_KI270793v1_alt     97109 75 +    126136 GGCAGTGAACGAGCCTCTG--GAGGGTCCCTGGAGGGGAGGAGAGGGAGGACAAGAGCGCATCTCGTGGAGGAGGGG
s panTro5.chr5             181363467 75 - 181907262 GGCAGTGAATGAGCCTCTG--GAGGGTCCCTGGAGGGGAGGAGAGGGAGGACAAGAGCGCATCTCCTGGAGGAGGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183082273 75 - 183735486 GGCAGTGAATGAGCCTCTG--GAGGGTCCCTGGAGGGGAGGAGAGGGAGGACAAGAGCGCATCTCCTGGAGGAGGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175902 75 +    698298 GGCAGTGAACGAGCCTCTG--GAAGGTCCCTGGAGGGGAGGAGAGGGAGGACAAGAGCGCATCTCCTGGAGGAGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179548973 66 - 180051392 GGCAGTGAACGAG-----------GGTCCCTGGAGGGGAGGAGAGGGAGGCCAAGGGCACATCTCCTGGAGGAGGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181282118 66 - 181584905 GGCAGTGAACGAG-----------GGTCCCTGGAGGGGAGGAGAGGGAGGCCAAGGGCACATCTCCTGGAGGAGGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      288257 66 -   1764207 GGCAGTGAACGAG-----------GGTCCCTGGAGGGGAGGAGAGGGAGGCCAAGGGCACATCTCCTGGAGGAGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      293388 66 -  16742782 GGCAGTGAACAAG-----------GGTCCCTGGAGGGGAGGAGAGGGAGGCCAAGGGCACATCTCCTGGAAGAGGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90595523 66 -  91010382 GGCAGTGAACGAG-----------GGTCCCTGGAGGGGAGGAGAGGGAGGCCAAGGGCACATCTCCTGGAGGAGGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      191178 66 -    438239 GGCAGTGAACGAG-----------GGTCCCTGGAGGGGAGGAGAGGGAGGCCAAGGGCACATCTCCTGGAGGAGGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220862 66 -    514179 GGCAGTGAACGAG-----------GGTCCCTGGAGGGGAGGAGAGGGAGGCCAAGGGCACATCTCCTGGAGGAGGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203880284 74 + 204313951 GGCTGTGAACGAGCCTCTG--GG-GGGCCCTGGAGGGGAGGAGAAGGAGGCCAAGAGCACACCTCCTGGAGAAGGGG
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16034210 45 +  16417988 GGCCATGAACGAGCCTCT---GG-GGGCCCTGGAGGGGA----------------------------GGAGAAGGGG
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1      121188 74 +    298490 GGCCGTGAATGAGCCTCTG--GG-GGGCCCTGGAAGGGAGGAGAAGGAGGCCAAGAGCAAGCCTCCCGGAGAAGGGG
i cebCap1.NW_016108158v1   C 0 I 20
s aotNan1.NW_018503740v1    25447340 74 -  25620257 GGCCGTGAACGAGACTCTG--GG-GGGCCCTGGAGCGGGGGAGAAGGACGCCAAGTGCACGCCTCCTGGAGAAGGGC
i aotNan1.NW_018503740v1   C 0 I 1
s otoGar3.GL873745           1901112 72 -   2165740 GGAGGTGAAGGAGGCTCCAATGG-GGACCCTGGAGGGGAG--GAAGGAGGCTCAGGGCAAGGCT--TTGAGGAGAAG
i otoGar3.GL873745         I 350 C 0
e canFam3.chr34             11740936 354 +  42124431 I
e nomLeu3.chr6             120593577 100 - 121039945 M

a score=96374.000000
s hg38.chr5_KI270793v1_alt     97184 17 +    126136 CAAACACACCCTGGGGG
s panTro5.chr5             181363542 17 - 181907262 CAAACACACCCTGGGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183082348 17 - 183735486 CAAACACACCCTGGGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175977 17 +    698298 CAAACACACCCTGGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179549039 17 - 180051392 CAAACGCACACTGGGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181282184 17 - 181584905 CAAACGCACACTGGGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      288323 17 -   1764207 CAAACGCACACTGGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      293454 17 -  16742782 CAAACGCACGCTGGGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90595589 17 -  91010382 CAAACGCACACTGGGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      191244 17 -    438239 CAAACGCACGCTGGGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220928 17 -    514179 TAAACGCACATTGGGAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203880359 17 + 204313951 TGAACGCTTGCTCGGGA
i calJac3.chr2             I 1 I 3
s saiBol1.JH378155          16034256 16 +  16417988 CAAACACTCGCCCGCG-
i saiBol1.JH378155         I 1 I 2
s aotNan1.NW_018503740v1    25447415 17 -  25620257 CAAACGCTCGCCGGGGT
i aotNan1.NW_018503740v1   I 1 C 0
s otoGar3.GL873745           1901184 17 -   2165740 GAAGCAAACCTAGGAGG
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      121262 20 +    298490 I
e canFam3.chr34             11740936 354 +  42124431 I
e nomLeu3.chr6             120593577 100 - 121039945 M

a score=290924.000000
s hg38.chr5_KI270793v1_alt     97201 42 +    126136 TAGATGCAAGGCTGAGCCAGGCAGGCCAGGCAGTGTCTGCTG
s panTro5.chr5             181363559 42 - 181907262 TAGATGCAAGGCTGAGCCAGGCAGGCCAAGCCGTGTCTGCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183082365 42 - 183735486 TAGATGCAAGGCTGAGCCAGGCAGGCCAAGCCGTGTCTGCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      175994 42 +    698298 TAGATGCAAGGCTGAGCCAGGCAGGCCAGGCCGTGTCTGCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179549056 42 - 180051392 CAGATgccaggccgagccaggcaggccaggccGTGTCTGCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181282201 42 - 181584905 CAGATgccaggccgagccaggcaggccaggccGTGTCTGCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      288340 42 -   1764207 CAGATgccaggccgagccaggcaggccaggccGTGTCTGCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      293471 42 -  16742782 CAGATgccaggccgagccaggcaggccaggccGTGTCTGCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90595606 42 -  91010382 CAAATgccaggccgagccaggcaggccaggccGTGTCTGCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      191261 42 -    438239 CAGATgccaggccgagccaggcaggccaggccGTGTCTGCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220945 42 -    514179 CAGATGCCAGGCCGAGCCAGGCAGGCCAGGCCGTGTCTGCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203880379 42 + 204313951 CAGAATCAAGGCATAGTGTGGCAGGCCAGGCCGTGTCTGCCG
i calJac3.chr2             I 3 C 0
s saiBol1.JH378155          16034274 41 +  16417988 CAGAGACAGGGCATAGC-TGGCAGGCCAGGCCGCATCTGCCG
i saiBol1.JH378155         I 2 C 0
s cebCap1.NW_016108158v1      121282 42 +    298490 CAGAGGCAAGGCATAGTCTGGCAGGCCAGGCCCTGTCTGCTG
i cebCap1.NW_016108158v1   I 20 C 0
s aotNan1.NW_018503740v1    25447432 23 -  25620257 CAGAGGCAAGGCAGAGTCTGGCA-------------------
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1901201 28 -   2165740 -------GAGGCACA-------AGCCCAGCATGTGTCCACCT
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11740936 354 +  42124431 I
e nomLeu3.chr6             120593577 100 - 121039945 M

a score=10500.000000
s hg38.chr5_KI270793v1_alt     97243 1 +    126136 G
s panTro5.chr5             181363601 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183082407 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176036 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120593681 1 - 121039945 G
i nomLeu3.chr6             M 100 C 0
s rheMac8.chr6             179549098 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181282243 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      288382 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      293513 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90595648 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      191303 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220987 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203880421 1 + 204313951 G
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16034315 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      121324 1 +    298490 G
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25447455 0 -  25620257 C
e otoGar3.GL873745           1901229 0 -   2165740 C
e canFam3.chr34             11740936 354 +  42124431 I

a score=4688163.000000
s hg38.chr5_KI270793v1_alt     97244 516 +    126136  
s panTro5.chr5             181363602 516 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183082408 516 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176037 516 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120593682 514 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179549099 511 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181282244 511 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      288383 511 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      293514 499 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90595649 496 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      191304 499 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      220988 500 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203880422 511 + 204313951  
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16034316 509 +  16417988  
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1      121325 505 +    298490  
i cebCap1.NW_016108158v1   C 0 I 1
s aotNan1.NW_018503740v1    25447455 505 -  25620257  
i aotNan1.NW_018503740v1   C 0 I 20
s otoGar3.GL873745           1901229 474 -   2165740  
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11741290 512 +  42124431  
i canFam3.chr34            I 354 C 0

a score=53408.000000
s hg38.chr5_KI270793v1_alt     97760 11 +    126136 GATG---------AGAGGGA
s panTro5.chr5             181364118 11 - 181907262 GATG---------AGAGGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183082924 11 - 183735486 GATG---------AGAGGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176553 11 +    698298 GATG---------AGAGGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594196 11 - 121039945 GATG---------AGAGGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179549610 11 - 180051392 AATG---------AGAGGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181282755 11 - 181584905 AATG---------AGAGGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      288894 11 -   1764207 AATG---------AGAGGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294013 11 -  16742782 AATG---------AGAGGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596145 11 -  91010382 AATG---------AGAGGGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      191803 11 -    438239 AATG---------AGAGGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      221488 11 -    514179 AATG---------AGAGGGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203880934 18 + 204313951 GGGCGGAGGGTTGAGAGG--
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16034826  9 +  16417988 GGGC---------AGAGG--
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1      121831  9 +    298490 GGCC---------GGAGG--
i cebCap1.NW_016108158v1   I 1 C 0
s otoGar3.GL873745           1901704 11 -   2165740 GAAG---------AGAAAGA
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11741802 11 +  42124431 GACA---------TGAAGGC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25447960 20 -  25620257 I

a score=1231566.000000
s hg38.chr5_KI270793v1_alt     97771 151 +    126136 GAAACCTTGCTGCCCACACAGGTGGAGAGGCTCAGCTGCAGCGTGAGGATCCTGGGGGGCTGCC-GTCAGCCGTCTGC----ATGTTATTAACTAAGAAAAGGTCT-TGGAAGATAAAGATTTTCAGACCCAACTGGAACAAACCAGCACACCTAGA
s panTro5.chr5             181364129 151 - 181907262 GAAACCTTGCTGCCCACACAGGCGGAGAGGCCCAGCTGCAGCGTGAGGATCCTAGGGGGCTGCC-ATCAGCCGTCTGC----ATGTTATTAACTAAGAAAAGGTCT-TGGAAGATAAAGATTTTCAGACCCAACTGGAACAAACCAGCACATCTAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183082935 151 - 183735486 GAAACCTTGCTGCCCACACAGGCGGAGAGGCCCAGCTGCAGCGTGAGGATCCTAGGGGGCTGCC-ATCAGCCGTCTGC----ATGTTATTAACTAAGAAAAGGTCT-TGGAAGATAAAGATTTTCAGACCCAACTGGAACAAACCAGCACATCTAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176564 151 +    698298 GAAACCTTGCTGCCCACACAGGCGGAGAGGCCCAGCTGCAGCGTGAGGATCCTGGGGGGCTGCC-GTCAGCCGTCTGC----ATGTTATTAACTAAGAAAAGGTCT-TGGAAGATAAAGATTTTCAGACCCAACTGGAACAAACCAGCACACCTAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594207 151 - 121039945 GAAACCTTGCTGCCCACACAGGCGGAGAGGCCCAGCTGCAGCGTGAGGATCCTGGGGGGCTGCC-ATCAGCCGTCTGC----ATGTTATTAACTAAGAAAAGGTCT-TGAAAGATAAAGATGTTCAGACCCAACTGGAACAAACCAGCACACCTAGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179549621 150 - 180051392 GAAACCCTGCTGCCCATAGAGGCGGG-----CCAGCTGCAGCGTGAGGATGCTTGGGGGCTGCC-ATCAGCCGTCTGTCTGGATGTTACTAACTAAGAAAAGCCAT-TGGAAGATAAAGATTTTCAGACTCAACGGGAACAAACCGGCACACCTAGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181282766 150 - 181584905 GAAACCCTGCTGCCCATACAGGCGGG-----CCAGCTGCAGCGTGAGGATGCTGGGGGGCTGCC-ATCAGCTGTCTGTCTGGATGTTACTAACTAAGAAAAGGCAT-TGGAAGATAAAGATTTTCAGACTCAACGGGAACAAACCGGCACACCTAGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      288905 150 -   1764207 GAAACCCTGCTGCCCATACAGGCGGG-----CCAGCTGCAGCGTGAGGATGCTGGGGGGCTGCC-ACCAGCCGTCTGTCTGGATGTTACTAACTAAGAAAAGGCAT-TGGAAGATAAAGATTTTCAGACTCAACGGGAACAAACCGGCACACCTAGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294024 150 -  16742782 GAAACCCTGCTGCCCATACAGGCGGG-----CCAGCTGCGGCGTGAGGATGCTGGGGGGCTGCC-ATCAGCCGTCTGTCTGGATGTTATTAACTAAGAAAAGGCAT-TGGAAGATAAAGATTTTCAGACTCAACGGGAACAAACCGGCACACCTGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596156 150 -  91010382 GAAACCCTGCTGCCCATACAGGCGGG-----CCAGCTGCAGCGTGAGGATGCTGGGGGGCTGCC-ATCAGCCGTCTGTCTGGATGTTATCAACTAAGAAAAGGCAT-TGGAAGATAAAGATTTTCAGACTCAACGGGAACAAACCGGCACACCTAGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      191814 150 -    438239 GAAACCCTGCTGCCCATACAGGCGGG-----CCAGCTGCAGCGTGAGGATGCTGGGGGGCTGCC-ATCAGCCGTCTGTCTGGATGTTATTAACTAAGAAAAGGCAT-TGGAAGATAAAGATTTTCAGACTCAACGGGAACAAACCGGCACACCTAGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      221499 150 -    514179 GAAACTCTGCGGCCCACACAGGCGGG-----CCGGCTGCAGCGTGAGGATGCTGGGGTGCTGCC-ATTAGCCATCTGTCTGGATGTTATTAACTAAGAAAAGGCAT-TGGAAGATAAAGATTTTCAGACTCAACGGGAACAAACCGGCACACCTAGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203880952 144 + 204313951 GAAACCCTGCTGCCCACACCAGCAGAGAGGCCCAGTTGCAGCGCGTGGAGCCT--GGGGCTGCC-AGCAGCCGTCTGC----ATATT----ACTAAGAAGAGGTTT-TGGGAGGTAAAGATTTTCAGGCCCG-TTGGAGCAAACCCGCACACCTAGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16034835 149 +  16417988 GAAGCCCTGCTGCCCACACCCGCAGAGAGGCCCAGCTGCAGCGTGCAGAGCCT-GGGGGCTGCC-AGCAGCCGTCTGC----ATGTGATTAACTAAGAAGAAGTCT-TGGAACGTAAAGATTTTCAGGCCCC-TTGGAACAAACCCGCACACCTAGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      121840 147 +    298490 GAAACCCTGCTGCC--CACCAGCAGAGAGGCCCAGCTGCAGCCTGCGGGGCCT-GGGGGCTGCC-AGCAGCCGTCTGC----ATGCTAATAACTAAGAAGAGGTCT-TGGAAGGTAAAGATTTTGAGTCCCC-TTGGAAGAAACCCACACACCTAGA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25447980 147 -  25620257 GAAACCGTGCTGCCCACACCAGCAGAGAGGCCCAGCTGAAGCGTGCGGAG-CT-GGGGGCTGCC-AGCAGCCGTCTGC----ATGTTATTAACTGAGAAGAGGTCT-TGGAAGGTAAAGATTTTCAGGCCCA--TGGAACAAAGCCACACACCTAGA
i aotNan1.NW_018503740v1   I 20 C 0
s otoGar3.GL873745           1901715 113 -   2165740 ---AATGTGCTGTCCA-------------------------------GATCTT--GGTGCTACAGACTAGCCAATTAC----ATattat----taagaatagatacatataagataagagttattggactcaccttcaccaaatccacacatacaag
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11741813 140 +  42124431 CACTGTCTGCGGCTCAGTGAGGAGCGAGAGGTGGGCAGCAGAGTCCGGGT-CTGTGAGCCCCTG-GTCCGTGGCTGGT----ACGGTGCTAGTCAAG------CCT-GGACACACAAGGA----CAAACCCGATCGGGCCTGATGAGAAAGCCAAGA
i canFam3.chr34            C 0 I 580

a score=921500.000000
s hg38.chr5_KI270793v1_alt     97922 114 +    126136 GCTCTGCGTCCCTGCATCCTACGAGTCCCGTTGAGTCTGAGCAGAGCACAGAACACAGAACTGCGTCAATGACTGAGGCAGATTCACCCACACAGACCAG----GTTC-CTCCTACAAA
s panTro5.chr5             181364280 114 - 181907262 GCGCTGCGTCCCTGCATCCTACAAGTCCCGTTGAGTCTGAGCAGAGCACAGAACACAGAACTGCGTCAATGACTGAGGCAGATTCACCCACACAGACCAG----GTTC-CTCCTACAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083086 114 - 183735486 GCGCTGCGTCCCTGCATCCTACAAGTCCTGTTGAGTCTGAGCAGAGCACAGAACACAGAACTGCGTCAATGACTGAGGCAGATTCACCCACACAGACCAG----GTTC-CTCCTACAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176715  96 +    698298 GCGCTGCGTCCCTGCATCCTACAAGTCCCGTTGAGTCTGAGCAGAGCACAGAACACAGAACTGCGTCAACGACTGAGGCAGattcacccacacaga-----------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594358 107 - 121039945 GCACTGCGTCCCTGCATCCTACAAGTCCCGTTAAGTCTGAG-------CAGAACACAGAACTGCATCAAGGGCTGAGGCAGATTCACCCACGCAGACCAG----GTTC-CTCccacgaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179549771 114 - 180051392 ACGCCGTGTCCCTGCATCCTACAAGTCCCGTTAAGTCTGAGCAGAGCACAAAACACAGAACTGCATCAAAGCCTGAGGCAGATTCACCCACACAGACCAG----GTTC-CCCCCACAAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181282916 114 - 181584905 ACGCCGTGTCCCTGCATCCTACAAGTCCCGTTAAGTCTGAGCAGAGCACAAAACACAGAACTGCATCAAAGGCTGAGGCAGATTCACCCACACAGACCAG----GTTC-CCCCCACAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      289055 114 -   1764207 ACGCCGTGTCCCTGCATCCTACAAGTCCCGTTAAGTCTGAGCAGAGCACAAAACACAGAACTGCATCAAAGGCTGAGGCAGATTCACCCACACAGACCAG----GTTC-CCCCCACAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294174 114 -  16742782 ACGCCGTGTCCCTGCATCCTACAAGTCCCGTTAAGTCTGAGCAGAGCACAGAGCACAGAACTGCATCAAAGGCTGAGGCAGATTCACCCACACAGACCAG----GTTC-CCCCCACAGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596306 114 -  91010382 ACGCCGTGTCCCTGCATCCTACAAGTCCTGTTAAGTCTGAGCAGAGCACAGAACACAGAACTGCATCAAAGGCTGAGGCAGATTCACCCACACAGACCAG----GTTC-CCCCCACAAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      191964 114 -    438239 ACGCCGTGTCCCTGCATCCTACAAGTCCCGTTAAGTCTGAGCAGAGCACAGGACACAGAACTGCATCAAAGGCTGAGGCAGATTCACCCACACAGACCAG----GTTC-CCCCCACAAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      221649 114 -    514179 GCGCCGTGTCCCTGCATCCTGCAAGTCCCGTTAAGTCTGAGCAGAGCACAGAACACAGAACTGCATCAAAGGCTGAGGCAGATTCACCCACACAGACCAG----GTTC-CTCCCACAAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203881096 114 + 204313951 GAGCTGCGTCCCGGCATCCTGCAGGTCCCACCAG----GAGCGGAGCACAGAAAACAGAACTGCATCAAGGGCTGAGGCGGATTCACCCACACAGACCCACCCGATTC-CTCCCGcaaa
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16034984 114 +  16417988 GTGCTGCATCCCGGCATCCCGCAAGTCCCACTAG----GAGCAGAGCACAGAAAACAGAACTGCATCAAGGGCTGAGGCAGAGTCACCCACACAGACCCACCCGATTC-CTCccacaaa
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      121987  96 +    298490 GCGCTGCATCCCGGCATCCTGCAAGTCCCACTAG----GAGCAGAGCCCAGAAAACAGAACTGCACCAAGGGCTGAGGCAGATTCACCCACACGGACCCA-------------------
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25448127  95 -  25620257 GCGCTGCATCCCGGCATCCTGCAAGTCCCGCTGG----GAGCAGAGCACAGAAAACAGAAGTGCATC-GGGGCTGAGGCAGATTCACCCGCACAGACCCA-------------------
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1901828  86 -   2165740 cc-------ccctgtacccta---------------------aaaccgcagaacat-gcactcactaagggggagcagcagactcaccaaaatacaccag----actctttcctacaaa
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11741953 580 +  42124431 I

a score=29463.000000
s hg38.chr5_KI270793v1_alt     98036 6 +    126136 GCGCCT
s panTro5.chr5             181364394 6 - 181907262 GCGCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083200 6 - 183735486 GCGCCT
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120594465 3 - 121039945 gcg---
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179549885 6 - 180051392 GCACCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283030 6 - 181584905 GCACCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      289169 6 -   1764207 GCACCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294288 6 -  16742782 GCACCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596420 6 -  91010382 GCACCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192078 6 -    438239 GCACCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      221763 6 -    514179 GCACCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203881210 6 + 204313951 gcgcct
i calJac3.chr2             C 0 I 787
s saiBol1.JH378155          16035098 6 +  16417988 gtgcct
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25448222 0 -  25620257 C
e otoGar3.GL873745           1901914 0 -   2165740 C
e cebCap1.NW_016108158v1      122083 0 +    298490 C
e canFam3.chr34             11741953 580 +  42124431 I
e gorGor5.CYUI01015805v1      176811 0 +    698298 C

a score=5420.000000
s hg38.chr5_KI270793v1_alt     98042 34 +    126136 TTTGCCAAACATAAGAGGACTGAGGTCCAGGTTC
s panTro5.chr5             181364400  3 - 181907262 TTT-------------------------------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083206  3 - 183735486 TTT-------------------------------
i panPan2.chr5             C 0 C 0
s rheMac8.chr6             179549891 34 - 180051392 TTCGCCAAACGCAAGAGGACTGAGGGCCAGATTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283036 34 - 181584905 TTCGCCAAACGCAAGAGGACTGAGGGCCAGATTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      289175 34 -   1764207 TTCGCCAAACGCAAGAGGACTGAGGGCCAGATTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294294  5 -  16742782 TTCGC-----------------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596426  5 -  91010382 TTTGC-----------------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192084  5 -    438239 TTCGC-----------------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      221769 34 -    514179 TTCGCCAAACGCAAGAGGACTGAGGGCCAGATTC
i colAng1.NW_012118799v1   C 0 I 736
e aotNan1.NW_018503740v1    25448222  0 -  25620257 C
e otoGar3.GL873745           1901914  0 -   2165740 C
e cebCap1.NW_016108158v1      122083  0 +    298490 C
e saiBol1.JH378155          16035104  0 +  16417988 C
e calJac3.chr2             203881216 787 + 204313951 I
e canFam3.chr34             11741953 580 +  42124431 I
e nomLeu3.chr6             120594468  0 - 121039945 C
e gorGor5.CYUI01015805v1      176811  0 +    698298 C

a score=34183.000000
s hg38.chr5_KI270793v1_alt     98076 44 +    126136 CTCCCGCAAAGCGCCTTTCGCCAAACATAAGAGGACTGAGGTCC
s panTro5.chr5             181364403 25 - 181907262 -------------------GCCAAACATAAGAGGACTGAGGTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083209 25 - 183735486 -------------------GCCAAACATAAGAGGACTGAGGTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176811  2 +    698298 ------------------------------------------cc
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179549925 44 - 180051392 CTTCTGCaaagcgcctttcatcaaacataagcagactgaggtcc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283070 44 - 181584905 CTTCTGCaaagcgcctttcatcaaacataagcagactgaggtcc
i macFas5.chr6             C 0 T 50
s macNem1.NW_012012389v1      289209 44 -   1764207 CTTCTGCaaagcgcctttcatcaaacataagcagactgaggtcc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294299 23 -  16742782 ---------------------CAAACGCAAGAGGCCTGAGGGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596431 23 -  91010382 ---------------------CAAACGCAAGAGGACTGAGGGCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192089 23 -    438239 ---------------------CAAACGCAAGAGGACTGAGGGCC
i manLeu1.NW_012110441v1   C 0 C 0
s cebCap1.NW_016108158v1      122083  2 +    298490 ------------------------------------------CC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25448222  2 -  25620257 ------------------------------------------CC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1901914  0 -   2165740 C
e saiBol1.JH378155          16035104  0 +  16417988 C
e calJac3.chr2             203881216 787 + 204313951 I
e canFam3.chr34             11741953 580 +  42124431 I
e nomLeu3.chr6             120594468  0 - 121039945 C
e colAng1.NW_012118799v1      221803 736 -    514179 I

a score=32960.000000
s hg38.chr5_KI270793v1_alt     98120 11 +    126136 AGGTTCCTCcc
s panTro5.chr5             181364428 11 - 181907262 AGGTTCCTCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083234 11 - 183735486 AGGTTCCTCcc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176813 11 +    698298 aggttcctccc
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181283064 11 - 181584905 AGATTCCTTCT
i macFas5.chr6             T 50 C 0
s cerAty1.NW_012009470v1      294322 11 -  16742782 GGATTCCTTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596454 11 -  91010382 AGATTCCTTCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192112 11 -    438239 AGATTCCTTCT
i manLeu1.NW_012110441v1   C 0 C 0
s cebCap1.NW_016108158v1      122085 11 +    298490 CGATTCCCCcc
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25448224 11 -  25620257 CGATTCCTCcc
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1901914  0 -   2165740 C
e saiBol1.JH378155          16035104  0 +  16417988 C
e calJac3.chr2             203881216 787 + 204313951 I
e canFam3.chr34             11741953 580 +  42124431 I
e nomLeu3.chr6             120594468  0 - 121039945 C
e colAng1.NW_012118799v1      221803 736 -    514179 I
e macNem1.NW_012012389v1      289253  0 -   1764207 C
e rheMac8.chr6             179549969  0 - 180051392 C

a score=49411.000000
s hg38.chr5_KI270793v1_alt     98131 10 +    126136 gcaaagcgcc
s panTro5.chr5             181364439 10 - 181907262 GCAAAGCGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083245 10 - 183735486 gcaaagcgcc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176824 10 +    698298 gcaaagcgcc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594468  2 - 121039945 --------cc
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181283075 10 - 181584905 GCaaagcgcc
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      294333 10 -  16742782 GCaaagcgcc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596465 10 -  91010382 GCaaagcgcc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192123 10 -    438239 GCaaagcgcc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      222539 10 -    514179 GCaaagcgcc
i colAng1.NW_012118799v1   I 736 C 0
s cebCap1.NW_016108158v1      122096 10 +    298490 gcaaagcgac
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25448235 10 -  25620257 acaaagcgcc
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1901914  0 -   2165740 C
e saiBol1.JH378155          16035104  0 +  16417988 C
e calJac3.chr2             203881216 787 + 204313951 I
e canFam3.chr34             11741953 580 +  42124431 I
e macNem1.NW_012012389v1      289253  0 -   1764207 C
e rheMac8.chr6             179549969  0 - 180051392 C

a score=182631.000000
s hg38.chr5_KI270793v1_alt     98141 28 +    126136 tttcgccaaacataagaggactgaggtc
s panTro5.chr5             181364449 28 - 181907262 TTTCGCcaaacataagaggactgaggtc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083255 28 - 183735486 tttcgccaaacataagaggactgaggtc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176834 28 +    698298 tttcgccaaacgtaagaggactgaggtc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594470 28 - 121039945 tttcgccaaacgtaagaggactgaggtc
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181283085 28 - 181584905 tttcatcaaacataagcagactgaggtc
i macFas5.chr6             C 0 I 1
s cerAty1.NW_012009470v1      294343 28 -  16742782 tttcatcagacataagcggactgaggtc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596475 28 -  91010382 tttcatcaaacataagcggactgaggcc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192133 28 -    438239 tttcatcaaacataagcggactgaggtc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      222549 28 -    514179 tttcatcaaacataagcggactgaggtc
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16035104 27 +  16417988 -ttcgtcaaacacgagaggactgaggtc
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      122106 28 +    298490 tttcgtcaaacacaagaagaccgaggtc
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25448245 28 -  25620257 tgtcgtcaaacacaagaggactgaagtc
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1901914 28 -   2165740 tttcaacaagtctgaaaggattgaaatc
i otoGar3.GL873745         C 0 C 0
e calJac3.chr2             203881216 787 + 204313951 I
e canFam3.chr34             11741953 580 +  42124431 I
e macNem1.NW_012012389v1      289253  0 -   1764207 C
e rheMac8.chr6             179549969  0 - 180051392 C

a score=7098.000000
s hg38.chr5_KI270793v1_alt     98169 1 +    126136 a
s panTro5.chr5             181364477 1 - 181907262 a
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083283 1 - 183735486 a
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176862 1 +    698298 a
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594498 1 - 121039945 a
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      294371 1 -  16742782 a
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596503 1 -  91010382 a
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192161 1 -    438239 a
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      222577 1 -    514179 a
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16035131 1 +  16417988 a
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      122134 1 +    298490 a
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25448273 1 -  25620257 a
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1901942 1 -   2165740 a
i otoGar3.GL873745         C 0 C 0
e calJac3.chr2             203881216 787 + 204313951 I
e canFam3.chr34             11741953 580 +  42124431 I
e macNem1.NW_012012389v1      289253 0 -   1764207 C
e macFas5.chr6             181283113 1 - 181584905 I
e rheMac8.chr6             179549969 0 - 180051392 C

a score=1533904.000000
s hg38.chr5_KI270793v1_alt     98170 190 +    126136 cacagcctgtgttctctgggctgagtggaattacagtagat-tcagtaagagaaagataagaggagaatctccaaatgtttagaaattaagcaattgtggattaagcaacacacttctaaataacccatatgtca---aaggagccacagtagaaatcagaaaatgtcttgagctgaatgaggaacacacagca
s panTro5.chr5             181364478 190 - 181907262 cacagcctgtgttctctgggctgagtggaattacagcagat-tcagtaagagaaagataagaggagaatctccaaatgtttagaaattaagcaactgtggattaagcaacacacttctaaataacccatatgtca---aaggagccacagtagaaatcagaaaatgtcttgagctgaatgaggaacacacagca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083284 190 - 183735486 cacagcctgtgttctctgggctgagtggaattacagcagat-tcagtaagagaaagataagaggagaatctccaaatgtttagaaattaagcaactgtggattaagcaacacacttctaaataacccatatgtca---aaggagccacagtagaaatcagaaaatgtcttgagctgaatgaggaacacacagca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      176863 193 +    698298 cacagcctgtgttctctgggctgagtggaattacagtagat-tcagtaagagaaagataagaggagaatctccaaatgtttagaaattaagcaattgtggattaagcaacacacttctaaataacccatatgtcaaagaaggagccacagtagaaatcagaaaatgtcttgagctgaatgaggaacacacagca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594499 158 - 121039945 cacggcatgtgttctctgggctgagtggaattacagtagat-tcagtaacagaaagataagaggagaatctccaaatgtttagaaattaagcaatcgtggattaagcaacacacttctaaataacccatatgtca---aaggagccacagtagaaatcagaa--------------------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179549969 166 - 180051392 cacggcctgtgttctctgggctgagtggaattacagttgat-tcagtaacagaaagataagaggagaatctccaaatgtttagaaattaagcaattgtggattaagcaacacacttctaaatagcccatatgtcaaagaagaagccacggtagaaatcagaaaatgt---------------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283114 166 - 181584905 cacagcctgtgttctctgggctgagtggaattacagttgat-tcagtaacagaaagataagaggagaatctccaaatgtttagaaattaagcaattgtggattaagcaacacacttctaaatagcccatatgtcaaagaagaagccacggtagaaatcagaaaatgt---------------------------
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      289253 166 -   1764207 cacggcctgtgttctctgggctgagtggaattacagttgat-tcagtaacagaaagataagaggagaatctccaaatgtttagaaattaagcaattgtggattaagcaacacacttctaaatagcccatatgtcaaagaagaagccacggtagaaatcagaaaatgt---------------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294372 166 -  16742782 cacggcctgtgttctctgggctgagtggaattacaattgat-tcagtaacagaaagataagaggagaatctccaaatgtttagaaattaagcaattgtggattaagcaacacacttctaaatagcccatatgtcaaagaagcagccacggtagaaatcagaaaatgt---------------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596504 166 -  91010382 cacagcctgtgctctctgggctgagtggaattacagttggt-tcagtaacagaaagataagaggagaatctccaaatgtttagaaattaagcaattgtggattaagcaacacacttctaaatagcccatctatcaaagaagaagccacggtagaaatcagaaaatgt---------------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192162 166 -    438239 cacggcctgtgttctctgggctgagtggaattacagttgat-tcagtaacagaaagataagaggagaatctccaaatgtttagaaattaagcaattgtgggttaagcaacacacttctaaatagcccatatgtcaaagaagcagccacagtagaaatcagaaaatgt---------------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      222578 166 -    514179 cacagcctgtgttctctgggctgagtggaatcacagttgat-tcagtaacagaaagataagaggagaatctccaaatgtttagaaattaagcacttgtggattaagcaacacacttctaaataacccatatgtcaaagaagaagtcacggtagaaatcagaaaatgt---------------------------
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16035132 194 +  16417988 cagggcctgtgttctccggactgtgtggaattacagtcgatctcagtaacagaaaggtaagaagagaatctccaaatgtttagaaattaagcaattgtggattaagcaacacaattctaaataacgcatctgccaaagtagaagccacagtagaaatcagaaaatgtcttgagctgaacgaggaacacacagca
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      122135 194 +    298490 cagggcctgtgttctccgggctgtgtggaattacagtcgatctcagtaacagaaaggtaagaggagaatctccaaatgtttagaaattaagtaattgtggattaagcaacacaattctaaataacgcatatgccaaagaagaagccgcagtagaaatcagaaaatgccttgagctgaacaaggaacacacagca
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25448274 194 -  25620257 cagggcctgtgttctccggactgtgtggaattgcagtcgatctcagtaacagaaaggtaagaggagaatctccaaacgtttagaaattaagcaattgtggattaagcaacacaattctaaataacgcatatgccaaagaagaagccacagtagaaatcagaaaatgtcttgagctgaatgaggaacacacagca
i aotNan1.NW_018503740v1   C 0 I 4
s otoGar3.GL873745           1901943 186 -   2165740 tgcagtgtatgttctctggccatggtggaattatactagatttcaaacacagaatgaaaataggaagctctccgaatgtttgaaaatta--------tgaattaagcaatacacctctaaataacctatatgtcaaagaaaaaatcactatagaaatcagaaaatagcttgagctgaatatgggaaatacaaca
i otoGar3.GL873745         C 0 C 0
e calJac3.chr2             203881216 787 + 204313951 I
e canFam3.chr34             11741953 580 +  42124431 I

a score=130572.000000
s hg38.chr5_KI270793v1_alt     98360 58 +    126136 tataaaagcgtccaggatacaatgtcttgagctgaatgaggaacacacagcatatgaa
s panTro5.chr5             181364668 58 - 181907262 tataaaagcgtccaggatacaatgtcttgagctgaatgaggaacacacagcatatgaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083474 58 - 183735486 tataaaagcgtccaggatacaatgtcttgagctgaatgaggaacacacagcatatgaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      177056 58 +    698298 tataaaagcgtccaggatacaatgtcttgagctgaatgaggaacacacagcatatgaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594657 38 - 121039945 --------------------aatgtcttgagctgaatgaggagcacacagcatatgaa
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179550135 31 - 180051392 -------------------------cttgagctcaatgaggaacacacagcatatg--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283280 31 - 181584905 -------------------------cttgagctcaatgaggaacacacagcatatg--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      289419 31 -   1764207 -------------------------cttgagctcaatgaggaacacacagcatatg--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294538 31 -  16742782 -------------------------cttgagctcaatgaggaacacacagcatatg--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596670 31 -  91010382 -------------------------cttgagctcaatgaggaacacacagcatatg--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192328 31 -    438239 -------------------------cttgagctcaatgaggaacacacagcatatg--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      222744 31 -    514179 -------------------------cttgaactcaatgaggaacacacagcatatg--
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16035326 21 +  16417988 -------------------------cctgaa----------agcctccaggataca--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      122329 21 +    298490 -------------------------cctgaa----------agcctccaggataca--
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1902129 21 -   2165740 ------------------------tattaaaatctctgggataca-------------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25448468  4 -  25620257 I
e calJac3.chr2             203881216 787 + 204313951 I
e canFam3.chr34             11741953 580 +  42124431 I

a score=314763.000000
s hg38.chr5_KI270793v1_alt     98418 44 +    126136 aaagcctccaggatatgcaaaactagccaccaaagggaaatcca
s panTro5.chr5             181364726 44 - 181907262 aaagcctccaggatatgcaaaactagccaccaaagggaaatcca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083532 44 - 183735486 aaagcctccaggatatgcaaaactagccaccaaagggaaatcca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      177114 44 +    698298 aaagcctccaggatatgcaaaactagccaccaaagggaaatcca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594695 44 - 121039945 aaagcctccaggatatgcaaaactagccaccaaagggaaaccca
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179550166 44 - 180051392 aaagcctccaggatatgcaaaactagtcaccaaggagaaatcca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283311 42 - 181584905 aaagcctccaggatatgcaaaactatgca--aaggagaaatcca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      289450 44 -   1764207 aaagcctccaggatatgcaaaactagtcaccaaggagaaatcca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294569 44 -  16742782 aaagcctccaggatgtgcaaaactagtcaccaaggagaaatcca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596701 44 -  91010382 aaagcctccaggatatgcaaaactagtcaccaaggagaaatcca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192359 44 -    438239 aaagcctccaggatatgcaaaactagtcaccaaggagaaatcca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      222775 44 -    514179 aaagcctccaggatatgcaaaactagtcaccaaggagaaatcca
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16035347 26 +  16417988 -----------------caaaact-gtcaccaaagggaaatcta
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      122350 26 +    298490 -----------------caaaact-gtcaccaaagggaaatcta
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25448472 43 -  25620257 aaagcctccaggatacgcaaaact-gtcaccaaagggaaatcta
i aotNan1.NW_018503740v1   I 4 C 0
s otoGar3.GL873745           1902150 14 -   2165740 ------------------------------caaagggacattta
i otoGar3.GL873745         C 0 C 0
e calJac3.chr2             203881216 787 + 204313951 I
e canFam3.chr34             11741953 580 +  42124431 I

a score=2331841.000000
s hg38.chr5_KI270793v1_alt     98462 239 +    126136 cagctta-ttgaaaaagttccacatttaaaaa-gggg---aaatgctg-aaaccaatgacctatgctttcagctcaagaaactagaaaaaggacatcaaaataaagg----caaagcagaaggaaggaaatcatagtaaaatgtatgaaagagaagacagatataaatcagagaaaatcaacaagaccaaaatctggttctg-tgagaagatgaataaagttgataaacctcccagcaatgttgatcatt
s panTro5.chr5             181364770 239 - 181907262 cagctta-ttgaaaaagttccacatttaaaaa-gggg---aaatgctg-aaaccaatgacctatgctttcagttcaagaaactagaaaaaggacatcaaaataaagg----caaagcagaaggaaggaaatcatagtaaaatgtatgaaagagaagacagacataaatcagagaaaatcaacaagaccaaaatctggttctg-tgaaaagatgaataaagttgataaacctcccagcaatgttgatcatt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083576 239 - 183735486 cagctta-ttgaaaaagttccacatttaaaaa-gggg---aaatgctg-aaaccaatgacctatgctttcagttcaagaaactagaaaaaggacatcaaaataaagg----caaagcagaaggaaggaaatcatagtaaaatgtatgaaagagaagacagacataaatcagagaaaatcaacaagaccaaaatctggttctg-tgaaaagatgaataaagttgataaacctcccagcaatgttgatcatt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      177158 239 +    698298 cagctta-ttgaaaaagttccacatttaaaaa-gggg---aaatgctg-aaaccaatgacctatgctttcagttcaagaaactagaaaaaggacatcaaaataaagg----caaagcagagggaaggaaatcatagtaaaatgtatgaaagagaagacagacataaatcagagaaaatcaacaagaccaaaatctggttctg-tgaaaagatgaataaagttgataaacctcccagcaatgttgatcatt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594739 237 - 121039945 cagctta-ttgaaaaa-ttccacatttaaaaa-gggg---aaatgctg-aaaccaatgacctatgctttcagttcaagaaactagaaaaaggacatcaaaataaagg----caaagtagaaggaaggaaatcgtggtaaaatgtat-aaagagaagacagacataaattagagaaaatcgacaagaccaaaatctggttctg-tgaaaagatgaataaagttgataaacctcccagcaatgttgatcatt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179550210 241 - 180051392 cagctta-ttg-aaaagttacacatttaaaaa-gggg---aaattctg-aaaccagtgacctatgctttcagttcaagaaactagaaaaaggacatc-acataaaggcaaacaaagtagaaggaaggaagcaatagtaaaatgtatgaaagagaagaaagacataaattagagagaatcaacaagaccaaaatctggttctg-tgaaaagacgaataaagttgataaatctcctagcaatgttgatcatt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283353 242 - 181584905 cagctta-ttgaaaaagttacacatttaaaaa-gggg---aaattctg-aaaccagtgacctatgctttcagttcaagaaactagaaaaaggacatc-acataaaggcaaacaaagtagaaggaaggaagcaatagtaaaatgtatgaaagagaagaaagacataaattagagagaatcaacaagaccaaaatctggttctg-tgaaaagacgaataaagttgataaacctcctagcaatgttgatcatt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      289494 242 -   1764207 cagctta-ttgaaaaagttacacatttaaaaa-gggg---aaattctg-aaaccagtgacctatgctttcagttcaagaaactagaaaaaggacatc-acataaaggcaaacaaagtagaaggaaggaagcaatagtaaaatgtatgaaagagaagaaagacataaattagagagaatcaacaagaccaaaatctggttctg-tgaaaagacgaataaagttgataaacctcctagcaatgttgatcatt
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294613 242 -  16742782 cagctta-ttgaaaaagttacacatttaaaaa-gggg---aaatgctg-aaaccagtgacctatgctttcagttcaagaaactagaaaaaggacatc-acataaaggcaaacaaagtagaaggaaggaagtaatagtaaaatgtatgaaagagaagaaagacataaattagagagaatcaacaagaccaaaatctggttctg-tgaaaagacgaataaagttgataaacctcctagcaatgttgatcatt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596745 242 -  91010382 cagctta-ttgaaaaagttacacatttaaaaa-gggg---aaatgctg-aaaccagtgacctatgctttcagttcaagaaactagaaaaaggacatc-acataaaggcaaacaaagtagaaggaaggaaataatagtaaaatgtatgaaagagaagaaagatatagattagagagaatcaacaagaccaaaatctggttctg-tgaaaagacgaataaagttgataaacctcctagcaatgttgatcatt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192403 242 -    438239 cagctta-ttgaaaaagttacacatttaaaaa-gggg---aaattctg-aaaccagtgacctatgctttcagttcaagaaactagaaaaaggacatc-acataaaggcaaacaaagtagaaggaaggaagtaatagtaaaaagtatgaaagagaagaaagacataaattagagagaatcaacaagaccaaaatctggttctg-tgaaaagacgaataaagttgataaacctcctagcaacgttgatcatt
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      222819 242 -    514179 cagctta-ttgaaaaagttacacatttaaaaa-gggg---aaatgctg-aaactagtgaactatgctttcagttcaagaaactagaaaaaggacatc-acataaaggcaaacaaagtagaaggaaggaaataatagtaaaatgtgtgaaagagaagacagacataaattagagaaaatcaacaagaccaaaatctgattctg-tgaaaagatgaataaagtcgataaacctcctagcaatgttgatcatt
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16035373 239 +  16417988 gagctta-ctggaaaagttacacgtttaaaaaaggag---aaatgctg-aaaccagtgacctatgcttttagttcaagaaactagaaaaagggcatcaaaatacaggcaaacaaagtagaaggaaggaaataatagtaaaatctgtgaaagagaagccagac----atcagagaaaatccacaaggccaaaatctggttctg-tgaaaagatgaataaagttgataaacc-cctagcaatgtcgatcatt
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      122376 241 +    298490 gagctta-ttggaaaagtcacacatttaaaaaaggag---aaatgctg-aaaccagtgacctatgctttcagttcaagaaactagaaaaaggacatcaaaatacaggcaa--aaagtagaaggaaggaagtaagagtaaaatctgtgaaagagaagccagacattaatcagagaaaatccacaaggccaaaatctggttctg-tgaaaagatgaataaagttgataaacc-cctagcaatgtcgatcatt
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25448515 242 -  25620257 gagctta-tgggaaaagttacacatttaaaaacggag---aaatgctg--aaccagtgacctatgctttcagttcaagaaactagaaaaaggacatcaaaatacaggcaaacagagtagaaggaaggaaaccatagtacaatctgtgaaagagaagccagacagcaatcagagaaaatccacgaggccaaaatctggttctg-tgaaaacatgaataaagttgataaacc-cctagcaatgctgatcatt
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1902164 243 -   2165740 tacctca-gtgaaaaacttacatgtgtaaaaa-ggag---aaatgctgaaaatcaatgacctatgcctccagctcaagaagctagaaaaagaacatgaaaataaaggcaaagaaaacaaaaggaaggaaatagtaatgaaatctatgaagcagaagacagaaatacaataaagaaaatcaataagatcaaaatctgcttctg-tgcaaagatgaataaagttgctaaacc-tctggcaatattgatcatt
i otoGar3.GL873745         C 0 I 1
s canFam3.chr34             11742533 240 +  42124431 cagctcgcttctgagtgacccacgtcaaagaa-ggagtcataaccctgaaaatcaatgaccagagcttctagttcaagaagccagaaaaagaacatggaaataggagcaa-------agaaggaagggaagaatcaagaagcgtgtgaatcag-agacagaaatacagtagagaaaatcagcaaaaccaaatttaggttttgctgaaaagatcaatgaagttggaggacc-accagaaatattgatcact
i canFam3.chr34            I 580 C 0
e calJac3.chr2             203881216 787 + 204313951 I

a score=126662.000000
s hg38.chr5_KI270793v1_alt     98701 12 +    126136 aaaaaagagaaa--
s panTro5.chr5             181365009 12 - 181907262 ataaaagagaaa--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083815 12 - 183735486 ataaaagagaaa--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      177397 12 +    698298 aaaaaagagaaa--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594976 12 - 121039945 aaaaaagagaaa--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179550451 12 - 180051392 aaaaaagagaag--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283595 12 - 181584905 aaaaaagagaag--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      289736 12 -   1764207 aaaaaagagaag--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294855 12 -  16742782 aaaaaagagaag--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596987 12 -  91010382 aaaaaagagaag--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192645 12 -    438239 aaaaaagagaag--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      223061 12 -    514179 aaaaaagagaag--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203882003 12 + 204313951 aaaagagagaaa--
i calJac3.chr2             I 787 C 0
s saiBol1.JH378155          16035612 12 +  16417988 aaaaaagagaaa--
i saiBol1.JH378155         C 0 I 305
s cebCap1.NW_016108158v1      122617 12 +    298490 aaaaaagagaaa--
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25448757 12 -  25620257 aaaaaacagaaa--
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1902408 12 -   2165740 aaaagagagaaa--
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11742773 13 +  42124431 -aatgaaaaaaaca
i canFam3.chr34            C 0 C 0

a score=31799.000000
s hg38.chr5_KI270793v1_alt     98713 3 +    126136 aca
s panTro5.chr5             181365021 3 - 181907262 aca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083827 3 - 183735486 aca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      177409 3 +    698298 aga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594988 3 - 121039945 acg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179550463 3 - 180051392 aca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283607 3 - 181584905 aca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      289748 3 -   1764207 aca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294867 3 -  16742782 aca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90596999 3 -  91010382 aca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192657 3 -    438239 aca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      223073 3 -    514179 aca
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203882015 3 + 204313951 aca
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16035929 3 +  16417988 aca
i saiBol1.JH378155         I 305 C 0
s cebCap1.NW_016108158v1      122629 3 +    298490 aca
i cebCap1.NW_016108158v1   C 0 I 1191
s aotNan1.NW_018503740v1    25448769 3 -  25620257 aca
i aotNan1.NW_018503740v1   C 0 I 1270
s otoGar3.GL873745           1902420 3 -   2165740 acc
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11742786 3 +  42124431 gca
i canFam3.chr34            C 0 C 0

a score=58631.000000
s hg38.chr5_KI270793v1_alt     98716 9 +    126136 aaaatcatc
s panTro5.chr5             181365024 9 - 181907262 aaaatcatc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083830 9 - 183735486 aaaatcatc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      177412 9 +    698298 aaaatcatc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120594991 9 - 121039945 aaagtcatc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179550466 9 - 180051392 aaaatcatc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283610 9 - 181584905 aaaatcatc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      289751 9 -   1764207 aaaagcatc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294870 9 -  16742782 aaaatcatc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90597002 9 -  91010382 aaaatcatc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192660 9 -    438239 aaaatcatc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      223076 8 -    514179 aaagtca-c
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203882018 9 + 204313951 aaaatcgtt
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16035932 6 +  16417988 aaaatc---
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1902423 9 -   2165740 aaaattTTC
i otoGar3.GL873745         C 0 I 475
s canFam3.chr34             11742789 9 +  42124431 taaaccaac
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25448772 1270 -  25620257 I
e cebCap1.NW_016108158v1      122632 1191 +    298490 I

a score=4124235.000000
s hg38.chr5_KI270793v1_alt     98725 621 +    126136  
s panTro5.chr5             181365033 619 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183083839 619 - 183735486  
i panPan2.chr5             C 0 T 79
s gorGor5.CYUI01015805v1      177421 621 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120595000 619 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179550475 614 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181283619 614 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      289760 614 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      294879 589 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90597011 614 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      192669 606 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      223084 616 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203882027 538 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16035938 552 +  16417988  
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11742798 553 +  42124431  
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25448772 1270 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      122632 1191 +    298490 I

a score=182454.000000
s hg38.chr5_KI270793v1_alt     99346 52 +    126136 AGATGAGGCTGAGGGTGGGGGCAGGTGGCAAACGTTCCTGCTTCAGAGGAGG
s panTro5.chr5             181365652 52 - 181907262 AGATGAGGCTGAGGGTGGGGGCCGGTGGCCGAGGTTCCTGCCTCGGAGGAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183084379 52 - 183735486 AGATGGGGCTGAGGGTGGGGGCGGGTGGCCGAGGTTCCTGCCTCAGAGGAGG
i panPan2.chr5             T 79 C 0
s gorGor5.CYUI01015805v1      178042 52 +    698298 AGATGAGGCTGAGGGTGGGGGCAGGTGGCCAACGTTCCTGCCTCAGAGGAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120595619 52 - 121039945 AGATGAGGCTGAGGGTGGGGGCAGGTGGCCAACGTTCCTGCCTCAGAGGAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179551089 52 - 180051392 AGATGAGGCTGAGGGTGGGGGCAGGTGGCCAACGTTCCTGCCTCAGAGGAGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284233 52 - 181584905 AGATGAGGCTGAGGGTGGGGGCAGGTGGCCAACGTTCCTGCCTCAGAGGAGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290374 52 -   1764207 AGATGAGGCTGAGGGTGGGGGCAGGTGGCCAACGTTCCTGCCTCAGAGGAGC
i macNem1.NW_012012389v1   C 0 C 0
s chlSab2.chr4              90597625 52 -  91010382 AGACGAGGCTGAGGGTGGGGGCAGGTGGCCAACGTTCCTGCCTCAGAGGAGC
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      223700 52 -    514179 AGATGAGGCTGAGGGTGGGGGCAGGTGACCAACGTTCCTGCCTCAGAGGAGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203882565 14 + 204313951 ------GGCTGA---------------------GTTCCTGC-----------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16036490 14 +  16417988 ------GGCTGA---------------------GTTCCTGC-----------
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11743351 23 +  42124431 ------------------------GTCGCA-----TCCAGATTCACAACggg
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25448772 1270 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      122632 1191 +    298490 I
e manLeu1.NW_012110441v1      193275  0 -    438239 C
e cerAty1.NW_012009470v1      295468  0 -  16742782 C

a score=119753.000000
s hg38.chr5_KI270793v1_alt     99398 25 +    126136 CTTCCTGAGTGCCAGCACCTGCTCC
s panTro5.chr5             181365704 25 - 181907262 CTTCCTGAGTGCCAGCACCTGCTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183084431 25 - 183735486 CTTCCTGAGTGCCAGCACCTGCTCC
i panPan2.chr5             C 0 M 746
s gorGor5.CYUI01015805v1      178094 25 +    698298 CTTCCTGAGTGCCAGCACCTGCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120595671 25 - 121039945 CTTCCTGAGTGCCAGCACCTGCTCC
i nomLeu3.chr6             C 0 I 710
s rheMac8.chr6             179551141 19 - 180051392 CTTCCTGAGTGCCAGCACC------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284285 19 - 181584905 CTTCCTGAGTGCCAGCACC------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290426 19 -   1764207 CTTCCTGAGTGCCAGCACC------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295468 13 -  16742782 ------GAGTGCCAGCACC------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90597677 19 -  91010382 CTTCCTGAGTGCCAGCACC------
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      223752 19 -    514179 CTTCCTGAGTGCCAGCACC------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203882579 25 + 204313951 CTTCCTGGGTGCTGGCACCTGCTCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16036504 25 +  16417988 CTTCCCGAGTGCGGGCACCTGCTCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      123823 25 +    298490 CTTCCCGAGTGTGAGCACCTGCTCC
i cebCap1.NW_016108158v1   I 1191 C 0
s canFam3.chr34             11743374  4 +  42124431 ---------tgtc------------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25448772 1270 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e manLeu1.NW_012110441v1      193275  0 -    438239 C

a score=64829.000000
s hg38.chr5_KI270793v1_alt     99423 11 +    126136 TGCCGGCCTTA
s panTro5.chr5             181365729 11 - 181907262 TGCCGGCCTTA
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178119 11 +    698298 TGCCGGCCTTA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179551160 11 - 180051392 TGCCGGCCTTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284304 11 - 181584905 TGCCGGCCTTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290445 11 -   1764207 TGCCGGCCTTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295481 11 -  16742782 TGCCGGCCTTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90597696 11 -  91010382 TGCGGGCCTTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      193275  7 -    438239 ----GGCCTTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      223771 11 -    514179 TGCCGGCCTTA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203882604 11 + 204313951 TGCTGGCCTTA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16036529 11 +  16417988 TGCTGGCCTTA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      123848 11 +    298490 TGCTGGCCTTA
i cebCap1.NW_016108158v1   C 0 I 1078
s canFam3.chr34             11743378  2 +  42124431 tg---------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25448772 1270 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e nomLeu3.chr6             120595696 710 - 121039945 I
e panPan2.chr5             183084456 746 - 183735486 M

a score=116397.000000
s hg38.chr5_KI270793v1_alt     99434 20 +    126136 CAGATGCTACC---TATCAGCTT
s panTro5.chr5             181365740 20 - 181907262 CAGATGCTACC---TATCAGCTT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178130 20 +    698298 CAGATGCTACC---TATCAGCTT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179551171 20 - 180051392 CAGATGTTACC---TATCAGCTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284315 20 - 181584905 CAGATGTTACC---TATCAGCTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290456 20 -   1764207 CAGATGTTACC---TATCAGCTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295492 20 -  16742782 CAGATGTTACC---TATCAGCTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90597707 20 -  91010382 CAGATGTTACC---TATCAGCTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      193282 20 -    438239 CAGATGTTACC---TATCAGCTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      223782 20 -    514179 CAGATGTTACC---TATCAGCTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203882615 22 + 204313951 -GGATGCTACCCATTACCAGCtt
i calJac3.chr2             C 0 I 281
s saiBol1.JH378155          16036540 22 +  16417988 -GGATGCTACCCATTACCAGCtt
i saiBol1.JH378155         C 0 I 283
s canFam3.chr34             11743380 20 +  42124431 tagatgccatt---tatcagctc
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25448772 1270 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e nomLeu3.chr6             120595696 710 - 121039945 I
e panPan2.chr5             183084456 746 - 183735486 M

a score=5005.000000
s hg38.chr5_KI270793v1_alt     99454 1 +    126136 A
s panTro5.chr5             181365760 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178150 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179551191 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284335 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290476 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295512 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90597727 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      193302 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      223802 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s canFam3.chr34             11743400 1 +  42124431 a
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25448772 1270 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e saiBol1.JH378155          16036562 283 +  16417988 I
e calJac3.chr2             203882637 281 + 204313951 I
e nomLeu3.chr6             120595696 710 - 121039945 I
e panPan2.chr5             183084456 746 - 183735486 M

a score=251482.000000
s hg38.chr5_KI270793v1_alt     99455 48 +    126136 AAGGAATCTGCTTCTATTCTACGTTTCCCAAGGGTTTCCcctcccgaa
s panTro5.chr5             181365761 48 - 181907262 AAGGAATCTGCTTCTATTCTACGTTTCCCAAGGGTTTCCcctcccgaa
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178151 48 +    698298 AAGGAATCTGCTTCTATTCTACGTTTCCCAAGGGTTTCCcctcccgaa
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179551192 48 - 180051392 AAGGAATCTGCTTTTACTCTTTGTTTGCCAAGCGTTTCCcctgccgag
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284336 48 - 181584905 AAGGAATCTGCTTTTACTCTTTGTTTGCCAAGCGTTTCCcctgccgag
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290477 48 -   1764207 AAGGAATCTGCTTTTACTCTTTGTTTGCCAAGCGTTTCCcctgccgag
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295513 48 -  16742782 AAGGAATCTGCTTTTACTCTTTGTTTGCCAAGTATTTCCcctgccgag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90597728 48 -  91010382 AAGGAATCTGCTTTTACTCTTTGTTTGCCAAGCGTTTCCcctgccgag
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      193303 48 -    438239 AAGGAATCTGCTTTTACTCTTTGTTTGCCAAGCGTTTCCcctgccgag
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      223803 47 -    514179 AAGGAATCTGCTTTTACTCTGTGTTTGCCAAG-GGTTCCcctcccgag
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203882918 48 + 204313951 aggGAATCCGCTTCTATTCTATGTTTGCCGAGGGTTTCCcctcccgag
i calJac3.chr2             I 281 C 0
s saiBol1.JH378155          16036845 48 +  16417988 aggAAATCCGCCTCTATTCTACGTTTGCCAAGGCTTTCCcctcccgag
i saiBol1.JH378155         I 283 C 0
s canFam3.chr34             11743401 45 +  42124431 -ggcaatgtgcttccgttctaggtttactaag--ttttccctcttgta
i canFam3.chr34            C 0 I 327
e aotNan1.NW_018503740v1    25448772 1270 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e nomLeu3.chr6             120595696 710 - 121039945 I
e panPan2.chr5             183084456 746 - 183735486 M

a score=181060.000000
s hg38.chr5_KI270793v1_alt     99503 39 +    126136 atgcgggggccacaggcgag--------cgccaccactcggctact-g
s panTro5.chr5             181365809 39 - 181907262 ttgcgggggccacaggcgag--------cgccaccactcggctact-g
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178199 39 +    698298 ctgcgggggccacaggtgag--------cgccaccactcggctact-g
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179551240 39 - 180051392 ttgctggggccacaggtgag--------cgccatcacccggctatt-g
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181284384 39 - 181584905 ttgctggggccacaggtgag--------cgccatcacccggctatt-g
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290525 39 -   1764207 ttgctggggccacaggtgag--------cgccatcacccggctatt-g
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295561 39 -  16742782 ttgctggggccacaggtgag--------caccatcacccggctatt-g
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90597776 39 -  91010382 ttgctggggccacaggtgag--------cgccattacccggctatt-g
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      193351 39 -    438239 ttgctggggccacaggtgag--------cgccatcacccggctatt-g
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      223850 39 -    514179 ttgctggggccacaggtgag--------cgtcatcacccggctatt-g
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203882966 47 + 204313951 ttaccggggccacagatgagcaccaaccccccaccccccagctatat-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16036893 38 +  16417988 ttgccggggccacaggtgag--------ctccaccccccggctata--
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25448772 1270 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e canFam3.chr34             11743446 327 +  42124431 I
e nomLeu3.chr6             120595696 710 - 121039945 I
e panPan2.chr5             183084456 746 - 183735486 M

a score=1217651.000000
s hg38.chr5_KI270793v1_alt     99542 200 +    126136 ttttttattatg-ttttttagagacagggtctcactatgtggcccaggctggtctcgagctcccagcctcaagtgatccttctgcctgggcctcccagagcgctgggCTGGTCTCTGCACACGGTTGGATTCGGTTTTAGTGCTTCCAGTTGTGTTGGGCAACGGGGTGGGCGGGTTTGCCCGGGGCGGCGCGGTCCCTCC
s panTro5.chr5             181365848 200 - 181907262 ttttttattatg-ttttttagagacagggtctcactatgtggcctaggctggtctcgagctcccagcctcaagtgatccttctgcctgggcctcccagagcgctgggCTGGTCTCTGCACACGGTTGGATTCGGTTTTAGTGCTTCCAGTTGTGTTGGGCAATGGGGTGGGCGGGTTTGCCCGGGGCGGCGCGGTCCCTCC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178238 200 +    698298 ttttttattatg-ttttttagagacacggtctcactatgtggcctaggctggtctcgagctcccagcctcaagtgatccttctgcctgggcctcccagagcgctgggCTGGTCTCTGCACATGGTTGGATTCGGTTTTAGTGCTTCCCGTTGTGTTGGGCAATGGGGTGGGCGGGTTTGCCCGGGGCGGCGCGGTCCCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179551280 199 - 180051392 ttttttattatg-ctttttagagacagggtctcactatgtggcctaggctggtctcgaactctcggcctcaagtgatccttccgccttggtctcccagagagctgggCTGGTCTCTGCACATGGCTGGATTCGGTTTTC-TGTTTCGCGTTGTGTTGGGCGATGGGGTGGGCGGATTTGCCCTGGGCGGCGCGGTCCCTCC
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181284423 199 - 181584905 ttttttattatg-ctttttagagacagggtctcactatgtggcctaggctggtctcgaactctcggcctcaagtgatccttccgccttggtctcccagagagctgggCTGGTCTCTGCACATGGCTGGATTCGGTTTTC-TGTTTCCCGTTGTGTTGGGCGATGGGGTGGGCGGATTTGCCCTGGGCGGCGCGGTCCCTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290564 199 -   1764207 ttttttattatg-ctttttagagacagggtctcactatgtggcctaggctggtctcgaactctcggcctcaagtgatccttccgccttggtctcccagagagctgggCTGGTCTCTGCACATGGCTGGATTCGGTTTTC-TGTTTCCCGTTGTGTTGGGCGATGGGGTGGGCGGATTTGCCCTGGGCGGCGCGGTCCCTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295600 199 -  16742782 ttttttattacg-ctttttagagacaggttctcactatgtggcctaggctggtctcgaactctcggcctcaagtgatccttccgccttggtctcccagagagctgggCTGGTCTCTGCACATGGCTGGATTCGGTTTTT-TGTTTCCCGTTGTGTTGGGCGATGGGGTGGGCGGATTTGCCCGGGGCGGCGCGGTCCCTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90597815 199 -  91010382 ttttttattatg-ctttttagagacagggtctcactatgtggcctaggctggtctcgaactcccagcctcaagtgatccttccgccttggtctctcagagagctgggCTGGTCTCTGCACATGGCTGGATTCGGTTTTC-TGTTTCCCGTTGTGTTGGGCGATGGGGTGGGCGGATTTGCCCGGGGCGGCGCGGTCCCTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      193390 199 -    438239 ttttttattacg-ctttttagagacagggtctcactatgtggcctaggctggtctcgaactctcggcctcaagtgatccttccgccttggtctcccagagagctgggCTGGTCTCTGCACATGGCTGGATTCGGTTTTC-TGTTTCCCATTGTGTTGGGCGATGGGGTGGGTGGATTTGCCCGGGGCGGCGCGGTCCCTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      223889 200 -    514179 ttttttattatgtttttttagagacagggtctcactatgtggcctaggctggtctcaaactcccggcgtcaagtgatccttccgccttggtctcccagagagctgggCTGGTCTCTGCACATGGCTGGATTCGGTTTTC-TGTTTCCCGTTGTGTTGGGCGATGGGGTGGGCGGATTTGCCCGGGGCGGCGCGGTCCCTCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203883013 192 + 204313951 ttttttattatg-tttttt--agacagggtctcactatgcggcttagactggtctcgaactgccggcctccagtggtcctccc-cctggg-----AGGAGAGCTGGTCTGGTCTCTACGCACCGCTGGATTCGGTATTCGTGCTTCCCATTGTGTTGGGCGCTGTGGTAGCTGGGTTTGCCCAGGGCAGCGTGGTCCCTCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16036931 200 +  16417988 tttgttattatg-ttttttagagacagggtctcactattcggcttagaccggtctcaaactcccggcctccagtaatcctcccgccttggcctccctgagtgctgggCCAGTCTCTACGCACTGCTGGATTCGGTAACCGTGCTTCCCATTGTGTTGGGTGCTGGGGTAGCTGGGTTTGCCCAGGGCGGCATGGTCCCTCC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25450042 200 -  25620257 ttttttattgtg-ttttttagaaacagggtctcactatgcggcttagactggtctcgaactcccggcctccagtgatcctcccgccttggcctcccagagtgccgggCTGGTCTCTACGCACCGCTGGATTCGGTATCCGGGCTTCCCATTGTGTTGGGCGCTGGGGTAGCCGGGTTTGCCCAGGGCAGCGTGGTCCCTCC
i aotNan1.NW_018503740v1   I 1270 I 426
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e canFam3.chr34             11743446 327 +  42124431 I
e nomLeu3.chr6             120595696 710 - 121039945 I
e panPan2.chr5             183084456 746 - 183735486 M

a score=95849.000000
s hg38.chr5_KI270793v1_alt     99742 23 +    126136 GGGTCTGTTGGTGCCCGGATCCC
s panTro5.chr5             181366048 23 - 181907262 GGGTCTGTTGGTGCCTGGATCCC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178438 23 +    698298 GGGTCTGTTGGTGCCTGGATCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179551479 23 - 180051392 GGGTCTGTTGGTGCCTGGATCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284622 23 - 181584905 GGGTCTGTTGGTGCCTGGATCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290763 23 -   1764207 GGGTCTGTTGGTGCCTGGATCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295799 23 -  16742782 GGGTCTGTTGGTGCCTGGATCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598014 23 -  91010382 GGGTCTTTTGGTGCCTGGATCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      193589 23 -    438239 GGGTCTGTTGGTGCCTGGATCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      224089 22 -    514179 GGGTCTA-TGGTGCCTGGATCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203883205 23 + 204313951 CGGTGTGTCCGGGCCTGGATCCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16037131 10 +  16417988 CGGTGTGTCC-------------
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25450242 426 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e canFam3.chr34             11743446 327 +  42124431 I
e nomLeu3.chr6             120595696 710 - 121039945 I
e panPan2.chr5             183084456 746 - 183735486 M

a score=90920.000000
s hg38.chr5_KI270793v1_alt     99765 18 +    126136 GGAGCCCCGGGCGGGGGG
s panTro5.chr5             181366071 18 - 181907262 GGAGCCCCGGGCGGGGGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178461 18 +    698298 GGAGCCCCGGGCGGGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179551502 18 - 180051392 GGAGCCCCGGGCCGGGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284645 18 - 181584905 GGAGCCCCGGGCCGGGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290786 18 -   1764207 GGAGCCCCGGGCCGGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295822 18 -  16742782 GGAGCCCCGGGCCGGGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598037 17 -  91010382 GGAGCCCCGGGCCGGGG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      193612 18 -    438239 GGAGCCCCGGGCCGGGGG
i manLeu1.NW_012110441v1   C 0 M 510
s colAng1.NW_012118799v1      224111 18 -    514179 GGAGCCCCGGGCCGGGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203883228 18 + 204313951 GGAGCCTccggcgggggg
i calJac3.chr2             C 0 C 0
s canFam3.chr34             11743773 18 +  42124431 GGAGCTTGGGGTCAGTGG
i canFam3.chr34            I 327 C 0
e aotNan1.NW_018503740v1    25450242 426 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e saiBol1.JH378155          16037141  0 +  16417988 C
e nomLeu3.chr6             120595696 710 - 121039945 I
e panPan2.chr5             183084456 746 - 183735486 M

a score=135307.000000
s hg38.chr5_KI270793v1_alt     99783 44 +    126136 AGGCCACTGGCTTCGCGCGTGACCGCCAGGTCCGCAGCGCCTTT
s panTro5.chr5             181366089 36 - 181907262 AGGCCACTGGCTTCGCGCGTGACCGCCAGGTCCGCA--------
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178479 44 +    698298 AGGCCACTGGCTTCGCGCGTGACCGCCAGGTCCGCAGCGCCTTT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179551520 44 - 180051392 AGGCCGCCTGCTTCGCCCATGACCGCCAGGTCCGCAGCGCCTTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284663 44 - 181584905 AGGCCGCCCGCTTCGCCCATGACCGCCAGGTCCGCAGCGCCTTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290804 44 -   1764207 AGGCCGCCCGCTTCGCCCATGACCGCCAGGTCCGCAGCGCCTTT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295840 44 -  16742782 AGGCCGCCCGCCTCGCCTATGACCGCCAGGTCCGCAGCGCCTTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598054 44 -  91010382 AGGCCGCCCGCTTCGCCCATGACCGCCAGGTCCGCAGCGCCTTT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      224129 44 -    514179 AGGCCGCCCGCTTCGCCCACGACCGCCAGGTCCGCAGCGCCTTT
i colAng1.NW_012118799v1   C 0 M 475
s calJac3.chr2             203883246 43 + 204313951 cggccgcccgcTTAGGGCCTGGCTG-CGGATCCGCAGCGTCTTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16037141 29 +  16417988 --------------AGGCCTGGCTT-CATATCCACAGCGTCTTT
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11743791 38 +  42124431 ----TGTGCACTGGACCTCTGACCACAGGTGGCACAGGGTTC--
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25450242 426 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e nomLeu3.chr6             120595696 710 - 121039945 I
e manLeu1.NW_012110441v1      193630 510 -    438239 M
e panPan2.chr5             183084456 746 - 183735486 M

a score=420302.000000
s hg38.chr5_KI270793v1_alt     99827 166 +    126136 CGTGGCC-----GGAGAcggggcgaggc-----------------------gaccggaggtctcggccca-------------ggggcgcg-------------------------ggggagcggggcgcgggg-----cggggcggcgg---------------------------------------ccgggag-aggg------gcgTCCACGGGGGA---GGTCGCCTGTCCGCGGACCGCTAAGACACCGCAGCAGAGGCGTCcggggcgggcggggcggg----------
s panTro5.chr5             181366125 141 - 181907262 ---------------------GCGAGGC-----------------------GACCGGAGGTCTCAGCCCA-------------GGggcgcg-------------------------ggggagcggggcgcgggg-----cggggcggcgg---------------------------------------ccgggag-aggg------gcGTCCACGGGGGA---GGTCGCCTGTCCGCGGACCGCTGAGACACCGCAGCAGAGGCGTC---------CGGGGCGGG----------
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178523 181 +    698298 CGTGGCC-----GGAGACGGGGCGAGGC-----------------------GACCGGAGGTCTCAGCCCA-------------GGGGCGCGGATTGCAGCcggggcgcgggggagcggggagcggggcgcgggg-----cggggcggcgg---------------------------------------ccgggag-aggg------gCGTCCACGGGGGA---GGTCGCCTGTCCGCGGACCGCTAAGACACCGCAGC-GAGGCGTC---------CGGGGCGGG----------
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179551564 182 - 180051392 CGTGGCG-----GGAGACGTGGCGAGGCGAC-GGGTGGGGAGGGGCGAAGAGACGGGAGGTCTCAACCTA-------------ggggcgcg-------------------------ggggagcggggcgcggtg-----cggggcggggg---------------------------------------ccgggag-aggg------gcgtccacgggggagggggTCACCTCTCCGCGGACCGCGAAGACACCGCAGCAGAGGCGCC---------CGGGGCGGG----------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284707 182 - 181584905 CGTGGCG-----GGAGACGTGGCGAGGCGAC-GGGTGGGGAGGGGCGAAGAGACGGGAGGTCTCAACCTA-------------ggggcgcg-------------------------ggggagcggggcgcggtg-----cggggcggggg---------------------------------------ccgggag-aggg------gcgtccacgggggagggggtcgCCTCTCCGCGGACCGCGAAGACACCGCAGCAGAGGCGCC---------CGGGGCGGG----------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      290848 182 -   1764207 CGTGGCG-----GGAGACGTGGCGAGGCGAC-GGGTGGGGAGGGGCGAAGAGACGGGAGGTCTCAACCTA-------------ggggcgcg-------------------------ggggagcggggcgcggtg-----cggggcggggg---------------------------------------ccgggag-aggg------gcgtccacgggggagggggtcgCCTCTCCGCGGACCGCGAAGACACCGCAGCAGAGGCGCC---------CGGGGCGGG----------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      295884 182 -  16742782 CGTGGCG-----GGAGACGGGGCGAGGCGAC-GGGTGGGGAGGGGCGAAGAGACGGGAGGTCTCAACCTA-------------GGGGCGCG-------------------------GGGGAGCGGGGCGCGGTG-----CGGGGCGGGGG---------------------------------------CCGGGAG-AGGG------GCGTCCACAGGGGAGGGGGTCGCCGCTCCGCGGACCGCGAAGACACCGCAGCAGAGGCGCC---------CGGGGCGGG----------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598098 182 -  91010382 CGTggcg-----ggagacggggagaggcgac-gggtggggaggggcgaagagacgggaggtctcggccta-------------ggggcgcg-------------------------ggggagcggggcgcggtg-----cggggcggggg---------------------------------------ccgggag-aggg------gcgtccacgggggagggggtcgCCTCTCCGCGGACCGCGAAGACACCGCAGCAGAGGCGCC---------CGGGGCGGG----------
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203883289 222 + 204313951 -CGGGCT-----GGGGCTGCGGTGAGGCGTC---GTGG-------------GGGGGGCGGTCTCAGCCAATGGGCGCTGGGTTGgggggcg---------------------------ggtgcagggcggggcgggagcccggacaggggcttgggagccgggagccgggagttgggagctgggagtccgcgggggagggg------gcgcccacaggggagggggTCGCCTGTCCCCGGACCGCGAAGACCCCGTGGCAGAGTCGCC---------TGGTGCGGG----------
i calJac3.chr2             C 0 I 5
s saiBol1.JH378155          16037170 173 +  16417988 -CGGGCC-----GGGGCTGGGGTGAGGCGTCATGGTGG-------------AGTGGGGGGTCTCAGCCAA-------TATTTTGGGAAGCG---------------------------GGCGCGGGGACAGGTG-----CCGGATACAGA---------------------------------------GCGGGGG-GGGA------GTGCCCATGGGCGAGGGGGTCGCCTGTCCCCAGACCTCGAAAACACGGTAGCAGAGTCGCC---------TGGGGCAGG----------
i saiBol1.JH378155         C 0 I 5
s canFam3.chr34             11743829 182 +  42124431 CAGGGCCATTGTGGGGAGGGGGCAATGCAGT-TCCAGGAGAAAGTC-----ACCTGGTGGACAC--CTGG-------------GGGATGTC-------------------------AGGGGGCGTGGCTCCTAG-----GAGGACTCCCT---------------------------------------CCTGGAA-TGGGCATCTTACTTCCAGAAAGAAGGGAGGAACCTG--------------AGACCCTGCAGAGGGAGAGGC---------AGGGGCAGAGATGGGGGCA
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25450242 426 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e nomLeu3.chr6             120595696 710 - 121039945 I
e manLeu1.NW_012110441v1      193630 510 -    438239 M
e colAng1.NW_012118799v1      224173 475 -    514179 M
e panPan2.chr5             183084456 746 - 183735486 M

a score=148295.000000
s hg38.chr5_KI270793v1_alt     99993 63 +    126136 cggggcggg------------aggg---ACAGGAG-C-GAGAGGGTT-----CGTGCGCTCAGCGGGAcggaagcggttgcggat
s panTro5.chr5             181366266 63 - 181907262 CGGGGCGGG------------AGGG---ACAGGAG-C-GAGAGGGTT-----CGTGCGCTCAGCGGGAcggaagcggttgcggat
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178704 63 +    698298 CGGGGCGGG------------AGGG---ACAGGAG-C-GAGAGGGTT-----CGTGCGCTCAGCGGGAcggaagcggttgcggat
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120596406 63 - 121039945 CGGGGCGGG------------CGGG---ACAGGAG-C-GAGAGGGCT-----CGTGAGCTCAGCTGGACGGATGTGGGTGCGGAT
i nomLeu3.chr6             I 710 C 0
s rheMac8.chr6             179551746 48 - 180051392 ----------------------GGG---ACAGGAG-CGGAGAGGGTT-----CGTGCGCTCAGCGGGACGGATGCGGT------T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181284889 48 - 181584905 ----------------------GGG---ACAGGAG-CGGAGAGGGTT-----CGTGCGCTCAGCGGGACGGATGCGGT------T
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291030 54 -   1764207 ----------------------GGG---ACAGGAG-CGGAGAGGGTT-----CGTGCGCTCAGTGGGAcggatgcggttgcggat
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296066 47 -  16742782 ----------------------GGA---ACAGGAG-CGGAGAGGGTT-----CGTGCGCTCAGCGGGACGGATGCGGT-------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598280 47 -  91010382 ----------------------GGG---ACAGGAG-CGGAGAGGGTT-----CGTGCGCTCGGCGGGACGGATGCGGT-------
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203883516 68 + 204313951 CGGGGGCGC------------GGGG---ACTGGAG-CGGAGAGGGTCGGTCGTGCGCTCTCAGAGGGACAGATGCGTCTGGCGA-
i calJac3.chr2             I 5 C 0
s saiBol1.JH378155          16037348 68 +  16417988 AGGGGGCGC------------AGAG---ACGGGAG-CAGAGAGGGTTCATCGCGTGCTCTCCGAGGGACAGATGCGTCTGGTGA-
i saiBol1.JH378155         I 5 C 0
s canFam3.chr34             11744011 81 +  42124431 CGAAGGGGGTCACCTATGTCCAGGGCTTCCAGGAGACAGCCAGGGTC---TGCGTGAGGTCAGTGGG-CAGAAGGGGTGGTGGAG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25450242 426 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e manLeu1.NW_012110441v1      193630 510 -    438239 M
e colAng1.NW_012118799v1      224173 475 -    514179 M
e panPan2.chr5             183084456 746 - 183735486 M

a score=371483.000000
s hg38.chr5_KI270793v1_alt    100056 132 +    126136 ------gcacatgcggatgc----ggaGAGAGGC--CCATGG----------CGAGTTCGGCGGCGTGGCCGGCCGGGC---------TGTCCCCGAGGGCGGAAGGG---AGGACGCGC-----GACCCCGACGGGCA--------------CTGA---------------------------------------------CGGG--CCGGC----------------CGGGGAC--------------GGTGCTGGGAGG
s panTro5.chr5             181366329 132 - 181907262 ------gcacatgcggatgc----ggaGAGGGGC--CCATGG----------CGAGTTCGGTGGCGTGGCCGGCCGGGC---------TGTCCCCGAGGGCGGAAGGG---AGGACGCGC-----GACCCCGACGGGCA--------------CTGA---------------------------------------------CGGG--CCGGC----------------CGGGGAC--------------GGTGCTGGGAGG
i panTro5.chr5             C 0 I 27
s panPan2.chr5             183085212 131 - 183735486 ------GCACATGCGGATGC----GGAGAGGGGC--CCATGG----------CGAGTTCGGTGGCGTGGCCGGCCGGGC---------TGTCCCCGAGGGCGGAAGGG---AGGACGCGC-----GA-CCCGACGGGCA--------------CTGA---------------------------------------------CGGG--CCGGC----------------CGGGGAC--------------GGTGCTGGGAGG
i panPan2.chr5             M 746 I 25
s gorGor5.CYUI01015805v1      178767 132 +    698298 ------gcacatgcggatgc----ggaGAGGGGC--CCATGG----------CGAGATCGGTGGCGTGGCCGGCCGGGC---------TGTCCCCGAGGGCGGAAGGG---AGGACGCGC-----GACCCCGACGGGCA--------------CTGA---------------------------------------------CGGG--CCGGC----------------CGGGGAC--------------GGTGCTGGGAAG
i gorGor5.CYUI01015805v1   C 0 I 26
s nomLeu3.chr6             120596469 160 - 121039945 ------------GCGGATGC----GGAGAGGGGC--CCATGG----------CGAGTCCGGTGGCGTGGCCGGCCGGGC---------TGTCCCCGAGAGCGGAAGGG---AGGACGCGC-----GACCCCGACAGGCA--------------CTGAC-------GGGGCTGCCGAC----------------GAAGggggtcggg--ccggc----gggggccgcgctcggggac--------------ggtgccgggAGG
i nomLeu3.chr6             C 0 I 19
s rheMac8.chr6             179551794 157 - 180051392 ------GCGGATGCGGATGC----GGAGACGGGC---------------------GCTCAGTGGTGTGGCCTGCCGGGC---------TGTCCCCGAGGGCGGAGGGG---AGGACGCGC-----AACCCCGACAGGCA--------------CCGAC-------Ggggctccgggc----------------gacgggggtcggg--ccggc----gggggccgcgctcagggAC--------------GGTGCCGGGAGG
i rheMac8.chr6             C 0 I 19
s macFas5.chr6             181284937 157 - 181584905 ------GCGGATGCGGATGC----GGAGACGGGC---------------------GCTCAGTGGTGTGGCCTGCCGGGC---------TGTCCCCGAGGGCGGAGGGG---AGGACGCGC-----AACCCCGACAGGCA--------------CCGAC-------Ggggctccgggc----------------gacgggggtcggg--ccggc----gggggccgcgctcagggAC--------------GGTGCCGGGAGG
i macFas5.chr6             C 0 I 19
s macNem1.NW_012012389v1      291084 157 -   1764207 ------gcggatgcggatgc----ggaGACGGGC---------------------GCTCAGTGGTGTGGCCTGCCGGGC---------TGTCCCCGAGGGCGGAGGGG---AGGACGCGC-----AACCCCGACAGGCA--------------CCGAC-------Ggggctccgggc----------------gacgggggtcggg--ccggc----gggggccgcgctcagggAC--------------GGTGCCGGGAGG
i macNem1.NW_012012389v1   C 0 I 19
s cerAty1.NW_012009470v1      296113 152 -  16742782 -----------TGCGGATGC----GGAGACGGGC---------------------GCTCGGTGGTGTGGCCTGCCGGGC---------TGTCCCCGAGGGCCGAGGGG---AGGACGCGC-----AACCCCGACAGGCA--------------CCGAC-------GGGGCTCCGGGC----------------GACGGGGGTCGGG--CCGGC----GGGGGCCGCGCTCAGGGAC--------------GGTGCCAGGAGG
i cerAty1.NW_012009470v1   C 0 I 19
s chlSab2.chr4              90598327 152 -  91010382 -----------TGCGGATGC----GGAGAAGGGC---------------------GCTCGGTGGTGTGGGCTGCCGGAC---------TGTCCCCGAGGGTGGAAAGG---AGgacgcgc-----aacccggacaggca--------------cggac-------ggggctccgggc----------------gacggggatcggg--ccggc----gggggccgcgcTCAGGGAC--------------GGTGCCGGGAGG
i chlSab2.chr4             C 0 I 19
s calJac3.chr2             203883584 128 + 204313951 ---------------------------GAGGGGCTCCCACGG----------CGGGTTCGGGGACTGG----GTCAGGC---------CGTCCCCAGGGGCGAAAGGG---AGGGCGCG-------------------------------------------------GCTCCGGGC----------------AGCGGGGGTCGGG--CCGGGGGGTGGGGACCACGCTCGGATAT--------------GGTTCCGGGAAC
i calJac3.chr2             C 0 I 23
s saiBol1.JH378155          16037416  96 +  16417988 ---------------------------GAGGGGCTCCCACTG---------CCAAGTTCAGGGGCGGG----GTCAGGC---------GGTCCCCAAGGGCAGAAGGG---AGGCTG----------------------------------------------------------------------------------------------------GGGGACCACGCTTGGATAT--------------GGTTCCGGGAGC
i saiBol1.JH378155         C 0 I 23
s canFam3.chr34             11744092 258 +  42124431 GCCAGGGCATGATCAGGTGCGGTTGGGGAGGGGC--TCTTGCAGAAATATAACAGAGCCCCAGGAGCCACTTGTCAGAAGGTCCCCAGTGTCCCTAAGGGTTGGGGGGCACAGGCCTAGCCTCCTGACCCCACCAAGCAGAGCGCTGTGAAGGTTGACGTGGAATGGGGCACTGGGCACAGATGGAGTCCCCTGCAGGGTGTCAGGATCCTGC--AGGGAGACAGGAATCTGGGACCCTGGTGGGGCTGGGGTCCTGGGTGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25450242 426 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      123859 1078 +    298490 I
e manLeu1.NW_012110441v1      193630 510 -    438239 M
e colAng1.NW_012118799v1      224173 475 -    514179 M

a score=434502.000000
s hg38.chr5_KI270793v1_alt    100188 61 +    126136 --------GCCTGCCGGG----------CCTTGCCAGGTCCCCCGCGCC---AT----------TGCCCTGGGGTGGACTGCGGGGCACAGA
s panTro5.chr5             181366488 61 - 181907262 --------GCCTGCCGGG----------CCTTGCCAGGTTCCCCGCGCC---AT----------CGCCCTGGGGTGGACTGCGGGGCACAGA
i panTro5.chr5             I 27 C 0
s panPan2.chr5             183085368 61 - 183735486 --------GCCTGCCGGG----------CCTTGCCAGGTTCCCCGCGCC---AT----------CGCCCTGGGGTGGACTGCGGGGCACAGA
i panPan2.chr5             I 25 C 0
s gorGor5.CYUI01015805v1      178925 64 +    698298 --------GCCTGCCGGG----------CCTTGCCAGGTCCCCCGCGCCGCGAT----------CGCCCTGGGGTGGACTGCGGGGCACAGA
i gorGor5.CYUI01015805v1   I 26 C 0
s nomLeu3.chr6             120596648 61 - 121039945 --------GCCCCCAGGC----------CCTTGCCAGGTCCCCAGCGCG---AT----------CGCCCTGGGGTGGACTGTGGGGCACAGA
i nomLeu3.chr6             I 19 C 0
s rheMac8.chr6             179551970 61 - 180051392 --------GCCGGCCGAG----------CCCTGCCAGGTCCCCAGCGCC---AT----------CGCCCTGGGGTGGACCGTGGGGCACAGA
i rheMac8.chr6             I 19 C 0
s macFas5.chr6             181285113 61 - 181584905 --------GCCGGCCGAG----------CCCTGCCAGGTCCCCAGCGCC---AT----------CGCCCTGGGGTGGACCGTGGGGCACAGA
i macFas5.chr6             I 19 C 0
s macNem1.NW_012012389v1      291260 61 -   1764207 --------GCCGGCCGAG----------CCCTGCCAGGTCCCCAGCGCG---AT----------CGCCCTGGGGTGGACCGTGGGGCACAGA
i macNem1.NW_012012389v1   I 19 C 0
s cerAty1.NW_012009470v1      296284 61 -  16742782 --------GCCGGCCGAG----------CCCTGCCAGGTCCCCAGCGCG---AT----------CGCCCTGGGGTGGACCGTGGGGCACAGA
i cerAty1.NW_012009470v1   I 19 C 0
s chlSab2.chr4              90598498 61 -  91010382 --------GCCGGCCGAG----------CCCTGCCAGGTCCCCAGCGCG---AT----------CGCCCTGGGATGGACCGCGGGGCACAGA
i chlSab2.chr4             I 19 C 0
s calJac3.chr2             203883735 61 + 204313951 --------GCACGCCGGG----------CCCTGCCAGGTCCCCCGCGCG---AT----------CTCCCTGGCGTGGACTGCGGGGCACAGA
i calJac3.chr2             I 23 C 0
s saiBol1.JH378155          16037535 57 +  16417988 --------GCCCGC--------------CCCTGCCAGGTCCCCAGCGCG---AT----------CGCCCTGGCGTGGACCGTGGGGCACAGA
i saiBol1.JH378155         I 23 C 0
s cebCap1.NW_016108158v1      124937 61 +    298490 --------GCCCGCCAGG----------CCCTGCCAGGTCCCCCACGCC---AT----------CGCCCTGGCGTGGACCGCGGGGCACAGA
i cebCap1.NW_016108158v1   I 1078 I 268
s aotNan1.NW_018503740v1    25450668 61 -  25620257 --------GCCCGCCGGG----------CCGTGCCAGGTCCCCCGCGCG---AT----------CGCCCTGGCGTGGACCGCGGGGCACAGA
i aotNan1.NW_018503740v1   I 426 C 0
s canFam3.chr34             11744350 89 +  42124431 CACTGGTGTCTGGCCAGGGGTAGGGTGTTTGTGTAGGGCCCCCAGAGTT---CTGGCCATACGACACCCTCAGATGGACTGGGGGGGGCTGG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1902432 475 -   2165740 I
e manLeu1.NW_012110441v1      193630 510 -    438239 M
e colAng1.NW_012118799v1      224173 475 -    514179 M

a score=26481.000000
s hg38.chr5_KI270793v1_alt    100249 3 +    126136 GAC
s panTro5.chr5             181366549 3 - 181907262 GAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183085429 3 - 183735486 GAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178989 3 +    698298 GAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120596709 3 - 121039945 GAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179552031 3 - 180051392 GAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285174 3 - 181584905 GAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291321 3 -   1764207 GAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296345 3 -  16742782 GAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598559 3 -  91010382 GAC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203883796 3 + 204313951 GAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16037592 3 +  16417988 GAC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25450729 3 -  25620257 GAC
i aotNan1.NW_018503740v1   C 0 I 76
s canFam3.chr34             11744439 3 +  42124431 GAC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      124998 268 +    298490 I
e manLeu1.NW_012110441v1      193630 510 -    438239 M
e colAng1.NW_012118799v1      224173 475 -    514179 M

a score=158171.000000
s hg38.chr5_KI270793v1_alt    100252 32 +    126136 TCTCCTGCGGCGCCGTCCCCAGCCCTTCGCCC
s panTro5.chr5             181366552 32 - 181907262 ACTCCTGCGGCGCCGTCCCCAGCCCTTCGCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183085432 32 - 183735486 ACTCCTGCGGCGCCGTCCCCAGCCCTTCGCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      178992 32 +    698298 ACTCCTGCGGCGCcgcccccagcccttcgccc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120596712 32 - 121039945 ACTCCCGCGGCGCcgcccccagcccctcgccc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179552034 32 - 180051392 ACTCCTGGGGCGCCGCCCCCAGCCCCTCGCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285177 32 - 181584905 ACTCCTGGGGCGCCGCCCCCAGCCCCTCGCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291324 32 -   1764207 ACTCCTGGGGCGCCGCCCCCAGCCCCTCGCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296348 32 -  16742782 ACTCCTGGGGCGCCGCCCCCAGCCCCTCGCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598562 32 -  91010382 ACTCCTGCGGCGCcgcccccagcccctcgccc
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203883799 32 + 204313951 CCTGCGATGGCGCCGCCCCCTGCCCCTCGGCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16037595 32 +  16417988 CCGGCGATGGCGCTGCCCCCTGCCCCTCGGCC
i saiBol1.JH378155         C 0 I 23
s canFam3.chr34             11744442 19 +  42124431 -CTT-----GCACAGCACCCTGCCC-------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25450732 76 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      124998 268 +    298490 I
e manLeu1.NW_012110441v1      193630 510 -    438239 M
e colAng1.NW_012118799v1      224173 475 -    514179 M

a score=38153.000000
s hg38.chr5_KI270793v1_alt    100284 48 +    126136 CTCCCGGCGC--AGCCCCCGGCCCCTGAGCTC---CCCACCCAACCCCGGGGC-
s panTro5.chr5             181366584 42 - 181907262 CTCCCGGCGC--AGCCCCCGGCCCCTGAGCTC---CTCACCCAACCC-------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183085464 42 - 183735486 CTCCCGGCGC--AGCCCCCGGCCCCTGAGCTC---CCCACCCAACCC-------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179024 42 +    698298 ctcccggcgc--agcccccggcccctGAGCTC---CCCACCTAACCC-------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120596744 48 - 121039945 ctcccggcgc--agcccccggcccctGAGCTC---CCCACCCAACCCCGGGGC-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179552066 20 - 180051392 CTCCCTGCGC--AGCCCACAGG--------------------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285209 20 - 181584905 CTCCCTGCGC--AGCCCACAGG--------------------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291356 20 -   1764207 CTCCCTGCGC--AGCCCACAGG--------------------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296380 20 -  16742782 CTCCCTGCGC--AGCCCACAGG--------------------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598594 48 -  91010382 ctccctgcgc--agcccccggcccctgagctc---cccacccagcgccGGGGC-
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203883831 19 + 204313951 ---ACGGTACCAAGGCCGCGGC--------------------------------
i calJac3.chr2             C 0 C 0
s canFam3.chr34             11744461 50 +  42124431 CACCCTGT----TGCCTGGGGCCCGGGAGCCTCAGCACAGCGGACTCCCATGGT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25450732 76 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      124998 268 +    298490 I
e saiBol1.JH378155          16037627 23 +  16417988 I
e manLeu1.NW_012110441v1      193630 510 -    438239 M
e colAng1.NW_012118799v1      224173 475 -    514179 M

a score=-880.000000
s hg38.chr5_KI270793v1_alt    100332 1 +    126136 -C
s nomLeu3.chr6             120596792 1 - 121039945 -C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179552086 1 - 180051392 -C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285229 1 - 181584905 -C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291376 1 -   1764207 -C
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296400 1 -  16742782 -C
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      194153 1 -    438239 -C
i manLeu1.NW_012110441v1   M 510 C 0
s calJac3.chr2             203883850 1 + 204313951 -C
i calJac3.chr2             C 0 I 3
s canFam3.chr34             11744511 1 +  42124431 A-
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181366626 0 - 181907262 C
e aotNan1.NW_018503740v1    25450732 76 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      124998 268 +    298490 I
e saiBol1.JH378155          16037627 23 +  16417988 I
e chlSab2.chr4              90598642 0 -  91010382 C
e colAng1.NW_012118799v1      224173 475 -    514179 M
e gorGor5.CYUI01015805v1      179066 0 +    698298 C
e panPan2.chr5             183085506 0 - 183735486 C

a score=55915.000000
s hg38.chr5_KI270793v1_alt    100333 24 +    126136 --CCTGAGCTC---CCCACCCAACCCCGG
s nomLeu3.chr6             120596793 24 - 121039945 --CCTGAACTC---CCCACCCAACCCCGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179552087 24 - 180051392 --CCTGAGCTC---CCCACCCAGCGCCGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285230 24 - 181584905 --CCTGAGCTC---CCCACCCAGCGCCGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291377 24 -   1764207 --CCTGAGCTC---CCCACCCAGCGCCGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296401 24 -  16742782 --CCTGAGCTC---CCCACCCAGCGCCGG
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      194154 24 -    438239 --CCTGAGCTC---CCCACCCAGCGCCGG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203883854 22 + 204313951 --CCCGACCTC---CCCACCGAACCCT--
i calJac3.chr2             I 3 C 0
s saiBol1.JH378155          16037650 23 +  16417988 --CCCGACCTC---CCCACCCAACCCCG-
i saiBol1.JH378155         I 23 C 0
s canFam3.chr34             11744512 24 +  42124431 TGCTGGACCTCAATCCCTGCCCGC-----
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181366626  0 - 181907262 C
e aotNan1.NW_018503740v1    25450732 76 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      124998 268 +    298490 I
e chlSab2.chr4              90598642  0 -  91010382 C
e colAng1.NW_012118799v1      224173 475 -    514179 M
e gorGor5.CYUI01015805v1      179066  0 +    698298 C
e panPan2.chr5             183085506  0 - 183735486 C

a score=226771.000000
s hg38.chr5_KI270793v1_alt    100357 59 +    126136 GGCCCCTGAACTCCC--CACCCAACCCACGGGGGGAGCTGCC-GCTTCAGACACAGGCCCTG
s panTro5.chr5             181366626 33 - 181907262 ----------------------------GGGGGGGAGCTGCC-GCTTCAGACACAGGCCCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183085506 33 - 183735486 ----------------------------GGGGGGGAGCTGCC-GCTTCAGACACAGGCCCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179066 34 +    698298 ---------------------------AGCGGGGGAGCTGCC-GCTTCAGACACAGGCCCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120596817 58 - 121039945 GGCCCCTGAACTCCC--CACCAACCCC-GGGGCGGGGTTGCC-GCTTCAGACGCAGGCCCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179552111 59 - 180051392 GGCCCCTGAACTCCC--CAATCAACCCACGGGCGGAGCTGCC-GCTTCAGACGCAGGCCCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285254 59 - 181584905 GGCCCCTGAACTCCC--CAATCAACCCACGGGCGGAGCTGCC-GCTTCAGACGCAGGCCCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291401 59 -   1764207 GGCCCCTGAACTCCC--CAATCAACCCACGGGCGGAGCTGCC-GCTTCAGACGCAGGCCCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296425 59 -  16742782 GGCCCCTGAACTCCC--CAATCAACCCAGGGGCGGAGCTGCC-GCTTCAGACGCAGGCCCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598642 55 -  91010382 ----CCTGAACTCCC--CACTCAACCCGGGGGCGGAGCTGCC-GCTTCAGACGCAGGCCCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      194178 59 -    438239 GGCCCCTGAACTCCC--CAGTCAACCCACGGGCGGAGCTGCC-GCTTCAGACGCAGGCCCCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      224653 59 -    514179 GGCCCCTGAACTCCC--CACTCAACCCAGGGGCGGAGCTGCC-ACTTCAGACGCAGGCCCTG
i colAng1.NW_012118799v1   M 475 C 0
s calJac3.chr2             203883876 33 + 204313951 -----------------------------GGACGAAGCTGCCTGCTTCAGACCCAGGCCCCT
i calJac3.chr2             C 0 I 3
s saiBol1.JH378155          16037673 33 +  16417988 -----------------------------GGAGGAAGCTGCCTGCTTCAGACCCAGGCCCCT
i saiBol1.JH378155         C 0 I 4
s canFam3.chr34             11744536 43 +  42124431 GGCCCCCCCGCTCCCATCCACCACC------GAGGAGCCTGT-GGTCCAC------------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25450732 76 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      124998 268 +    298490 I

a score=1382317.000000
s hg38.chr5_KI270793v1_alt    100416 175 +    126136 AGCTACCCCCGCAGGGGTGTCACAGT-GGGGGGGTCTGACTCCAACCCGGGCTGGTGCCCTCAGGGAGCCAGGAAAGGTGAGTCTCCGCGGGTGAGGAGACCCCAGGCCCAACACGGACAGGACGGACCAGAGCGC-GGGCCTCAAGTCCTGC-AGGCCCTCCAGCTCCAGGCTGGTC
s panTro5.chr5             181366659 175 - 181907262 AGCTACCCCTGCAGGGGTGTCACAGT-GGGGGGGTCTGACTCCAACCCGGGCTGGTGCCCTCAGGGAGTCAGGAAAGGTGAGTCTCCGCGGGTGAGGAGACCCCAGGCCCAACACGGACAGGATGGACCAGAGCGC-GGGCCTCAAGTCCTGC-AGGCCCTCCAGCTCCAGGCTGGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183085539 174 - 183735486 AGCTACCCCTGCAGGGGTGTCACAGT--GGGGGGTCTGACTCCAACCCGGGCTGGTGCCCTCAGGGAGCCAGGAAAGGTGAGTCTCCGCGGGTGAGGAGACCCCAGGCCCAACACGGACAGGATGGACCAGAGCGC-GGGCCTCAAGTCCTGC-AGGCCCTCCAGCTCCAGGCTGGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179100 165 +    698298 AGCTA-CCCTGCAGGGGTCTCACAGT-GGGGGGGTCTGACTCCAACCCGGGCTGGT---------GGGCCAGGAAAGGCGAGTCTCCGTGGGTGAGGAGACCCCAGGCCCAACACGGACAGGATGGACCAGAGCGC-GGGCCTCAAGTCCTGC-AGGCCCTCCAGCTCCAGGCTGGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120596875 175 - 121039945 AGCTACCCCTGCAGGGGTCTCACAGTGGGGGGGGTCTGACTCCAACCAGGGCTGGTGCCCTCAGGGAGCCAGCAAAGGTGAGTCTCCGTGGGTGAGGAGACCCCAGGCCCAACCCGGGC-TGACGGACCAGAGCGC-GGGCCTCAAGTCCTGC-AGGGCCTCCAGCTCCAGGCTGGTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179552170 173 - 180051392 AGCTACCCCGGCAGAGGTCTCACAGT---GGGGGTCTGACTCCAACCCGGGCCAGC-TTCTCAGGAAGCTGGGAAAGGTGAGTTTCCGTGGGTGAGGAGACCCCAGGCCCAACCCGGGCAGGACGGACCAGAGCCCTGGGCTTCAAGTCCTGC-AGGGCCTCCAGCTCCAGGCTGGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285313 174 - 181584905 AGCTACCCCGGCAGAGGTCTCACAGT---GGGGGTCTGACTCCAACCCGGGCCGGTGCCCTCAGGAAGCTGGGAAAGGTGAGTTTCCGTGGGTGAGGAGACCCCAGGCCCAACCCGGGCAGGACGGACCAGAGCCCTGGGCTTCAAGTCCTGC-AGGGCCTCCAGCTCCAGGCTGGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291460 174 -   1764207 AGCTACCCCGGCAGAGGTCTCACAGT---GGGGGTCTGACTCCAACCCGGGCCGGTGCCCTCAGGAAGCTGGGAAAGGTGAGTTTCCGTGGGTGAGGAGACCCCAGGCCCAACCCGGGCAGGACGGACCAGAGCCCTGGGCTTCAAGTCCTGC-AGGGCCTCCAGCTCCAGGCTGGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296484 174 -  16742782 AGCTACCCCGGCAGAGGTCTCACAGT---GGGGGTCTGACTCCAACCCGGGCCGGTGCCCTCAGGAAGCTGGGAAAGGTGAGTCTCCGTGGGTGAGGAGACCCCAGGCCCAACCCGGGCAGGACGGACCAGAGCCCGGGGCCTCAAGTCCTGC-AGGGCCTCCAGCTCCAGGCTGGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598697 174 -  91010382 AGCTACCCCGGCAGAGGTCTCACAGT---GGGGGTCTGACTCCAACCCGGGCTGGTGCCCTCAGGAAGCCAGGAAAGGTGAGTCTCCGTGGGTGAGGAGACCCCAGGCCCAACCCGGGCAGGACGGACCAGAGCCCGGGGCCTCAAGTCCTGC-AGGGCCTCCAGCTCCAGGCTGGTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      194237 174 -    438239 AGCTACCCCGGCAGAGGTCTCACAGC---TGGGGTCTGACTCCAACCCGGGCCGGTGCCCTCAGGAAGCTGGGAAAGGTGAGTCTCCGTGGGGGAGGAGACCCCAGGCCCAACCCGGGCAGGACGGACCAGAGCCCGGGGCCTCAAGTCCTGC-AGGGCCTCCAGCTCCAGGCTGGTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      224712 174 -    514179 AGCTACCCTGGCAGAGGTCTCACAGT---GGGGGTCTGACTCCAACCCGGGCTGGTGCCCTCAGGAAGCTAGGAAAGGTGAGTCTCCATGGGTGAGGAGACCCCAGGCCCAACCCTGGCAGGACGGACCAGAGCCCGGGGCCTCAAGTCCTGC-GGGGCCTCCAGCTCCAGGCTAGTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203883912 170 + 204313951 GGCTA-CCCGGCAGGGGTCTCGCAGT-GGGAGGGTTTGACTCCGACCCTGGCCAGTGCCCTCAGGGAGCCAGGAAAGGTGAGTCTCCGTGGGTGAGAAGACCCCAGGCCCAACCCGGGCAGGACGGACCAGAGCCC-AGGCCTCAAGTG-----GGGGCTTCCAGCTCCAGGCTGCTC
i calJac3.chr2             I 3 I 1
s saiBol1.JH378155          16037710 176 +  16417988 GGCTACCCCAGCAGGGGTCTCACAGT-GGGAGGGTTTGACTCCCACCCTGGCCAGTGCCCTCAGGAAGCCAAGAAAGGTGAGTCTCCGTGGGTGAGAAGACCCCAGGCCCAACCCGGGCAGGAGGGACCAGAGCCC-AGGCCTCAAGTTCCGTCGGGGCCTCCAGCTCCAGGCTGCTC
i saiBol1.JH378155         I 4 I 1
s aotNan1.NW_018503740v1    25450808 174 -  25620257 AGCTACCCCGGCAGGGGTCTGGCAGT-GGGAGG--TTGACTCCGACCCTGGCCAGTGCCCTCAGGCAGCCAGGAAAGGTGAGTCTCGGTGGGTGAGAAGACCCCAGGCCCAACCCGGGCAGGACGGACCAGAGCCC-AGGCCTCAAGTCCCGTGCGGGCCTCCAGCTCCAGGCTGCTC
i aotNan1.NW_018503740v1   I 76 I 44
s canFam3.chr34             11744579 119 +  42124431 ----------------ATGTACCTGC--------TCCAACTCCTGGCCTGGCTACC-CCATCAGTGGACCAGGGGTG--GAGCTACTGTTTGGAACAAGGCCCCAATC------------------AACAG------GGACCCCGGATGCTCC------TTCC--TTGCAGGCTGGGC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      124998 268 +    298490 I

a score=164615.000000
s hg38.chr5_KI270793v1_alt    100591 30 +    126136 AAGAGTCT---GTCCATCTCTGAAGAAGAGGAA
s panTro5.chr5             181366834 30 - 181907262 GAGAGTCT---GTCCATCTCTGAAGAAGAGGAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183085713 30 - 183735486 AAGAGTCT---GTCCATCTCTGAAGAAGAGGAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179265 30 +    698298 AAGAGTCT---GTCCATCTCTGAAGAAGAGGAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120597050 30 - 121039945 AAGAGTCC---GTCCATCTCTGAAGAGGAGGAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179552343 13 - 180051392 AAGAGTGT---GTCCA-----------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285487 30 - 181584905 AAGAGTGT---GTCCATCTCCGAAGAAGAGGAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291634 30 -   1764207 AAGAGTGT---GTCCATCTCCGAAGAAGAGGAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296658 30 -  16742782 AAGAGTCT---GTCCATCTCCGAAGAAGAGGAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598871 30 -  91010382 AAGAGTCT---GTCCATCTCCGAAGAAGAGGAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      194411 30 -    438239 AAGAGCCT---GTCCATCTCCGAAGAAGAGGAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      224886 30 -    514179 AAGAGTCT---GTCCATCTCCGAAGAAGAGGAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203884083 33 + 204313951 CAGAGTCTGTCGTCCAGGTCGGAAGAAGAGGAA
i calJac3.chr2             I 1 I 12
s saiBol1.JH378155          16037887 30 +  16417988 CAGAGTCT---GTCCAGGTCGGAAGAAGAGGAA
i saiBol1.JH378155         I 1 I 12
s canFam3.chr34             11744698 17 +  42124431 ------------TTTACTCACAAAGGCTC----
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25450982 44 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      124998 268 +    298490 I

a score=181880.000000
s hg38.chr5_KI270793v1_alt    100621 20 +    126136 AGGTCCCACCTGAGGCCTC-A
s panTro5.chr5             181366864 20 - 181907262 AGGTCCCACCTGAGGCCTC-A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183085743 20 - 183735486 AGGTCCCACCTGAGGCCTC-A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179295 20 +    698298 AGGTCCCACCTGAGGCCTC-A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120597080 20 - 121039945 AGGTCCCACATGAGACCTC-A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179552356 18 - 180051392 ---TCCCACCTGAGGCCTCAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285517 20 - 181584905 AGGTCCCACCTGAGGCCTC-A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291664 20 -   1764207 AGGTCCCACCTGAGGCCTC-A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296688 20 -  16742782 AGGTCCCACCTGAGGCCTC-A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598901 20 -  91010382 AGGTCCCACCTGAGGCCTC-A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      194441 20 -    438239 AGGTCCCACCTGAGGCCTC-A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      224916 20 -    514179 AGGTCCCACCTGAGGCCTC-A
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203884128 20 + 204313951 AGGTCCCATCTGAGACCGG-A
i calJac3.chr2             I 12 C 0
s saiBol1.JH378155          16037929 20 +  16417988 AGATCCCACCTGAGGCCTG-A
i saiBol1.JH378155         I 12 C 0
s cebCap1.NW_016108158v1      125266 20 +    298490 AGGTCCCACCTGAGGCCTC-A
i cebCap1.NW_016108158v1   I 268 C 0
s canFam3.chr34             11744715 20 +  42124431 TAGGCTCACCTGCAATCTC-A
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25450982 44 -  25620257 I
e otoGar3.GL873745           1902432 475 -   2165740 I

a score=376401.000000
s hg38.chr5_KI270793v1_alt    100641 50 +    126136 GAGGCCA---CCCGGGAAGGGAAGGGCTGAGCTCTAATCTGCTTTTGAGAAAG-
s panTro5.chr5             181366884 50 - 181907262 GAGGCCA---CCCGGGAAGGGAAGGGCTGAGCTCTAATCTGCTTTTGAGAAAG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183085763 50 - 183735486 GAGGCCA---CCCGGGAAGGGAAGGGCTGAGCTCTAATCTGCTTTTGAGAAAG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179315 50 +    698298 GAGGCCC---CCCGGGAAGGGAACGGCTGAGCTCTAATCTGCTTTTGAGAAAG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120597100 49 - 121039945 GAGGCC----CCCGGGAAGGGAAGGGCTGAGCTCTAACCTGCTTTTGAGAAAG-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179552374 50 - 180051392 GAGGCAC---CCGGGAAACGGAAGGGCTGAGCTCAAATCTGCTTTTGAGAAAG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285537 50 - 181584905 GAGGCAC---CCGGGAAACGGAAGGGCTGAGCTCAAATCTGCTTTTGAGAAAG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291684 50 -   1764207 GAGGCAC---CCGGGAAACGGAAGGGCTGAGCTCAAGTCTGCTTTTGAGAAAG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296708 50 -  16742782 GAGGCAC---CCGGGAAAGGGAAGGGCTGAGCTCAAATCTGCTTTTGAGAAAG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598921 50 -  91010382 GAGGCAC---CCGGGGAAGGGAAGGGCTGAGCTCGAATCTGCTTTTGAGAAAG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      194461 50 -    438239 GACGCAC---CCGGGAAAGGGAAGGGCTGAGCTCAAATCTGCTTTTGAGAAAG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      224936 50 -    514179 GAGGCAC---CCCGGGAAGGGAAGGGCTGAGCTCTAATCTGCTTTTGAGAAAC-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203884148 37 + 204313951 --------------GGA--GGAAGGGCTGAGCTCTTGTTTGCTTTTCAGAAAG-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16037949 39 +  16417988 --------------GGAAGGGAAGGGCTGAGCTCTTATCTGCTTTTGAGAAAG-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      125286 39 +    298490 --------------GGAAGGGAAGGGCTGAGCTCTCATCTGCTTTTGAGAAAG-
i cebCap1.NW_016108158v1   C 0 I 76
s aotNan1.NW_018503740v1    25451026 48 -  25620257 GAGGC-----CTGAGGAAGGGAAGGGCTGAGCTCTCATCTGCTTTTGAGAAAG-
i aotNan1.NW_018503740v1   I 44 C 0
s canFam3.chr34             11744735 54 +  42124431 CAGGCACCAACAGGCCAACCACAGAACAGTGGTCACTCACAATCTATAGGAAAT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1902432 475 -   2165740 I

a score=379624.000000
s hg38.chr5_KI270793v1_alt    100691 74 +    126136 ACATTTGTATCCCCCGGAT---CCAACAACCAATAAGAGTGGCATTGACGGGAGGTGGCA-TGACGGGGG-------------------------------GGCGCGGT
s panTro5.chr5             181366934 75 - 181907262 ACATTTGTATCCCACGGAT---CCAACAACCAACAAGAGTGGCATTGACGGGAGGTGGCA-TGACGGGGG------------------------------TGGGGCGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183085813 75 - 183735486 ACATTTGTATCCCACGGAT---CCGACAACCAACAAGAGTGGCATTGACGGGAGGTGGCA-TGACGGGGG------------------------------TGGGGCGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179365 76 +    698298 ACATTTGTATCCCACGGAT---CCACCAACCAATAAGAGTGGCATTGACTGGA-GTGGCA-TGACGGGGG------------------G----------GGGGGGTGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120597149 88 - 121039945 ACATTTGTATCCCACGGAT---CCAACAACCAATAAGAGTGGCATTGACGGGAGGTGGCATTGACGGGAG------------------GTGGCATTGACAGGAGGTGGC
i nomLeu3.chr6             C 0 I 9
s rheMac8.chr6             179552424 64 - 180051392 ACATTTGTATCCCACGGAT---CCAACAACCAATAAGTGTGGCATTGAGGGGAGGTGGCA-TGGTGGG-----------------------------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181285587 64 - 181584905 ACATTTGTATCCCACGGAT---CCAACAACCAATAAGTGTGGCATTGAGGGGAGGTGGCA-TGGTGGG-----------------------------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291734 64 -   1764207 ACATTTGTATCCCACGGAT---CCAACAACCAATAAGTGTGGCATTGAGGGGAGGTGGCA-TGGTGGG-----------------------------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296758 64 -  16742782 ACATTTGTATCCCACGGAT---CCAACAACCAATAAGTGTGGCACTGAGGGGAGGTGGCA-TGATGGG-----------------------------------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90598971 64 -  91010382 ACATTTGTATCCCACGGAT---CCAACAACCAATAAGTGTGGCATTGATGGGAGGTGGCA-TGATGGG-----------------------------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      194511 64 -    438239 ACATTTCTATCCCACGGAT---CCAACAACCAATAAGTGTGGCACTGAGGGGAGGTGGCA-TGATGGG-----------------------------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      224986 64 -    514179 ACCTTTGTATCCCACGGAT---CCAACAACCAATAAGTGTGGCATTGACAGGAGGTGGCA-TGATGGG-----------------------------------------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203884185 57 + 204313951 --------GCCCCAGCGAC---CTGATAACCCATAAATGTGGCATTGACGGGAGGTGGCG-GGATGGGG----------------------------------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16037988 76 +  16417988 --------GCCCCAGTGAT---CGGATAACCGATAAATGTGGCATTGAAGGGAGGTGGCG-GGATGGGGGTCTCCTTCGAGGGACGAC---------------------
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25451074 58 -  25620257 --------GCCCCAGCGAT---CAGATAACCGATAAATGTGGCATTGACGGGAGGTGGTG-GGATGGGGG---------------------------------------
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11744789 61 +  42124431 GCAACTTTAATCCAGCAATCACCTAAGAAATGATAAATGTGCCATTATGATGATTTGGGT-T-----------------------------------------------
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1902432 475 -   2165740 I
e cebCap1.NW_016108158v1      125325 76 +    298490 I

a score=2116309.000000
s hg38.chr5_KI270793v1_alt    100765 232 +    126136 GGTCTCTTTCCTGGAAGGGCATCTCCCAGAGGGGCCTCTTGCCTGAAGCTG----AGATGTGCCTGGCACACAGCAGGTGTG----GACCAAGGGAAGGCCAGCAGGTGTGG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACCTGGCCCCTGACAACTTTGGGTTGAAAAATAAACTTA---GAGTGGGCAGTGATGC-CTGTCTCCTGCCTGGCTTCAAGCATTGGAAGTTACTTAAAAA
s panTro5.chr5             181367009 232 - 181907262 GGTCTCTTTCCTGGAAGGGCATCTCCCAGAGGGGCCTCTTGCCTGAAGCTG----AGATGTGCCTGGCACACAGCAGGTGTG----GACCAAGGGGAGGCCAGCAGGTGTGG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACCTGGCCCCTGACAACTTTGGGTTGAAAAATAAACTTA---GAGTGGGCAGTGATGC-CTGTCTCCTGCCTGGCTTCGAGCATTGGAAGTTACTTAAAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183085888 232 - 183735486 GGTCTCTTTCCTGGAAGGGCATCTCCCAGAGGGGCCTCTTGCCTGAAGCTG----AGATGTGCCTGGCACACAGCAGGTGTG----GACCAAGGGGAGGCCAGCAGGTGTGG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACCTGGCCCCTGACAACTTTGGGTTGAAAAATAAACTTA---GAGTGGGCAGTGATGC-CTGTCTCTTGCCTGGCTTCGAGCATTGGAAGTTACTTAAAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179441 232 +    698298 GGTCTCTTTCCTGGAAGGGCATCTCCCAGAGGGGCCTCTTGCCTGAAGCTG----AGATGTGCCTGGCACACAGCAGGTGTG----GACCAAGGGAAGGCCAGCAGGTGCGG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACCTGGCCCCTGACAACTTTGGGTTGAAAAATAAACTTA---GAGTGGGCAGTGATGC-CTGTCTCCTGCCTGGCTTCGAGCATTGGAAGTTACTTAAAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120597246 232 - 121039945 GGTCTCCTTCCTGGAAGGGCATCTCCCAGAGGGGCCTGTTGCCTGAAGCTG----AGATGTGCCTGGCACACAGCAGGTGTG----GACGAAGGGAAGCCCAGCAGGTGCGG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACCTGGCCCCTGACAACTTCGGGTTGAAAAATAAACTTG---GATTGGGCAGAGATGC-CTGCCTCCTGCCTGGCTTCGAGCATTGGAAATTACTTAAAAA
i nomLeu3.chr6             I 9 C 0
s rheMac8.chr6             179552488 231 - 180051392 GGTCTCCTTCCTGGAAGAGCATCCCCCAGACGGGCCTCCTGCCTGAAGCTG----AGATGTGCCTGGCTCACAACAGGTGTG----GAAGAAGGGAAGTCCAGCAGGTGCAG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACTGGGCACCTGACAAGTCTGGGTCA-AAAATAAACTTG---GAGTGGGCGGTGATGC-CCGTCTCCTGCCTGGCTTCAGGCATTGGAAGTTACTTAAAAA
i rheMac8.chr6             C 0 I 313
s macFas5.chr6             181285651 231 - 181584905 GGTCTCCTTCCTGGAAGAGCATCCCCCAGACGGGCCTCCTGCCTGAAGCTG----AGATGTGCCTGGCTCACAGCAGGTGTG----GAAGAAGGGAAGTCCAGCAGGTGCAG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACTGGGCACCTGACAAGTCTGGGTCG-AAAATAAACTTG---GAGTGGGCGGTGATGC-CCGTCTCCTGCCTGGCTTCAGGCATTGGAAGTTACTTAAAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      291798 231 -   1764207 GGTCTCCTTCCTGGAAGAGCATCCCCCAGACGGGCCTCCTGCCTGAAGCTG----AGATGTGCCTGGCTCACAGCAGGTGTG----GAAGAAGGGAAGTCCAGCAGGTGCAG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACTGGGCACCTGACAAGTCTGGGTCG-AAAATAAACTTG---GAGTGGGCGGTGATGC-CCGTCTCCTGCCTGGCTTCAGGCATTGGAAGTTACTTAAAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      296822 232 -  16742782 GGTCTCCTTCCTGGAAGAGCATCCCGCAGAGGGGCTTCTTGCCTGAAACTG----AGATGTGCCTGGCTCACAGCAGGTGTG----GAAGAAGGGAAGTCCAGCAGGTGCAG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACTGGGCACCTGACAAGTTTGGGTCGAAAAATAAACTTG---GAGTGGGCGGTGACGC-CCGTCTCCTGCCTGGCTTCAGGCACTGGAAGTTACTTAAAAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90599035 232 -  91010382 GGTCTCCTTCCTGGAAGAGCATCCCCCAGAGGGGCCTCTTGCCTGAAGCTG----AGATGTGCCTGGCTCACAGCAGGTGTG----GAAGAAGGGAAGTCCAGCAGGTGCAG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACTTGGCACCTGACAAGTTTGGGTCGAAAAATAAACTTG---GAGTGGGCGGTGATGC-CTGTCTCCTGCCTGGCTTCAGGCATTGGAAGTTACTTAAAAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      194575 232 -    438239 GGTCTCCTTCCTGGAAGAGCACCCCCCAGACGGGCCTCCTGCCTGAAGCTG----AGATGTGCCTGGCTCACAGCAGGTGTG----GAAGAAGGCAAGTCCAGCAGGTGCAG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACTGGGCACCTGACAAGTTTGGGTCGAAAAATAAACTTG---GAGTGGGCGGTGATGC-CCGTCTCCTGCCTGGCTTCAGGCACTGGAAGTTACTTAAAAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      225050 236 -    514179 GGTCTCCTTCCTGGAAGGGCATCCCCCAGAGGGGCCTCTTGCCTGAAGCTGCAATGTATGTGCCTGGCTCACAGCAGGTGTG----GAAAAAGGGAAGTCCAGCAGGTGCAG--CTCCCAG--TGGAATAAA----------ACCT---TCCT------TAAGAAGACTTGGCACCTGACAAGTTTGGGTAGAAAAATAAACTTG---GAGTGGGCGGTGATGC-CTGTCTCCTGCCTGGCTTCAGGCACTGGAAGTTACTTAAAAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203884242 237 + 204313951 -GTCTCCTTCCTGGAAGGGCATCTCCCAGAGGGGCTTTTTGGCTGAAGCTG----AGCTGTGCCGGGCACACAGCCGGCAGA----GACAAAGGGAGGGCCGGCAGGTGCAG--CTCCCAG--TGGAATAAA----------ACCTTCTTCCT------CAACAAGACCTGGCACGTGACAACTTTGAGTTGAAAAATAAGCTTGTAGGGGAGGGAGGTGATGC-CTGTCTCCTGCCTGGCCTCGAGCACTGAAAGTTACTTAAAAA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16038064 237 +  16417988 AGTCTCCTTCCCGGAAGGGCATCTCCCAGAGGGGCTTTTTGGCTGAAGCTG----AGCTGTGCCTGGCACACAGCCTGCGGA----GATGAAGGGAGGGCCAGCAGGTGCAG--C-ACCAG--TGGAATAAA----------ACCTTCTTCCT------TAACAAGACCTGGCACCTGACAACTTTGAGTTGAAAGATAAGCTCGTAAGGGAGGGAGGTGCTGC-CTGTCTCCTGCCTGGCCACAAGCACTGAAAGTTACTTAAAAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      125401 237 +    298490 GGTCTCCTTCCTGGAAGGGCATCTCCCAGAGGGGCTTTTTGGCTGAAGCTG----AGCTGTGCCTGGCACACAGCCGGCGGA----GACGAAGGGAGGGCCAGCAGGTGCAG--CTCCCAG--TGGAATCAA----------AGCTTCTTCCT-------AACAAGACCTGGCACCTGACAACTTTGAGTTGGAAAATAAGCTTGTAGGGGAGGGAGGTGACGC-CTGTTTCCTGCCTGGCCTGAAGCACTGAAAGTTACTCAAAAA
i cebCap1.NW_016108158v1   I 76 C 0
s aotNan1.NW_018503740v1    25451132 236 -  25620257 --TCTCCTTCCTGGAAGGGCACCTCCCAGAGGGGCTTTTCGGCTGAAGCGG----AGCCGTGCCTGGCACACAGCCGGCAGA----GACGAAGGGAGGGCCAGCAGGTGCAG--CTCCCCG--CGGAATAAA----------ACCTTCCTCCT------TAACAAGACCTGGCACCCGACAACTTTGAGTTGAAAAATAAGCTTGTAGGGGAGGGAGGTGATGC-CTGTCTCCTGCGTGGCCTCAAGCACTGAAAGTTACTTAAAAA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11744850 214 +  42124431 --------------------GGCTCCCAGAGGGtctttgt--------ctg----aagagcaccaggcacaccgtaggtgctcagcaaaCAGGTGATGGCAGGCCCGTGCAGAATTACTGGCTTGGAGGTAATGGCGCTGGTTCCC---TCCTGCTCTGCAGGAGGGGCAGGTGTGTGATCACTTGGGGCAGAACTGTGAGCTTG------TGGGCGATGACGAGCTGTGTGCGGCCT------------TAGAGCTGAATTAAATA
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1902432 475 -   2165740 I

a score=13490.000000
s hg38.chr5_KI270793v1_alt    100997 3 +    126136 CTT
s panTro5.chr5             181367241 3 - 181907262 CTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183086120 3 - 183735486 CTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179673 3 +    698298 CTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120597478 3 - 121039945 CTT
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      297054 3 -  16742782 CTT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90599267 3 -  91010382 CTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      194807 3 -    438239 CTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      225286 3 -    514179 CCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203884479 3 + 204313951 GTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16038301 3 +  16417988 GTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      125638 3 +    298490 GTT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25451368 3 -  25620257 GTT
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11745064 3 +  42124431 CTC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1902432 475 -   2165740 I
e macNem1.NW_012012389v1      292029 0 -   1764207 C
e macFas5.chr6             181285882 0 - 181584905 C
e rheMac8.chr6             179552719 313 - 180051392 I

a score=1471510.000000
s hg38.chr5_KI270793v1_alt    101000 164 +    126136 AACT---TTCTTCTCTTAA--------ATATTGTTAACAACAGTATGAATGGATGC----------GCCTCTTCATCCACAAGACACTTTCACAAGCCGTAT--GTGGAATTCATGACAGGAAATTAATGTGACA----GACTAGGTG-----TTTTCAGTTTTATTTTCTTAATCCTGAAGTTCAGATGCT-GTGG
s panTro5.chr5             181367244 164 - 181907262 AACT---TTCTTCTCTTAA--------ATATTGTTAACAACAGTATGAATGGATGC----------GCCTCTTCATCCACAAGACACTTTCACAAGCCGTAT--GTGGAATTCATGACAGGAAATTAATGTGACA----GACTAGGTG-----TTTTCAGTTTTATTTTCTTAATCCTGAAGTTCAGATGCT-GTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183086123 164 - 183735486 AACT---TTCTTCTCTTAA--------ATATTGTTAACAACAGTATGAATGGATGC----------GCCTCTTCATCCACAAGACACTTTCACAAGCCGTAT--GTGGAATTCATGACAGGAAATTAATGTGACA----GACTAGGTG-----TTTTCAGTTTTATTTTCTTAATCCTGAAGTTCAGATGCT-GTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179676 164 +    698298 AACT---TTCTTCTCTTAA--------ATATTGTTAACAACAGTATGAATGGATGC----------GCCTCTTCATCCACAAGACACTTTCACAAGCCGTAT--GTGGAATTCATGACAGGAAATTAATGTGACA----GACTAGGTG-----TTTTCAGTTTTATTTTCTTAATCCTGAAGTTCAGATGCT-GTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120597481 172 - 121039945 AACTTTCTTCTTCTCTTGA--------GTATCGTTAACAACAGCATGAATAGATGT----------GCCTCTTCCTCCACAAGACACTTTCACAAGCCCTATG-GTGGAATTCATGAGAGGAAATTAATGTGACGGACTGACTAGGTG-----TTTTCAGTTTTATTTTCTTAATCCTGAAGTTCAGATGCT-GTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179553032 160 - 180051392 aaCT---TTCTTCTCTTGA--------GTATTGTTAACGACAGGATGAATGGATGC----------GCCTCTTTATCCACAAGACACTTTCACAAGCCATACG-GTGAAATTCATGGCAGGAAATTAATGTGACG----GACTAGGTG-----TATTCAG-----TTTTATTAATCCTGAAGCTCAGATGCT-GTGG
i rheMac8.chr6             I 313 C 0
s macFas5.chr6             181285882 160 - 181584905 AACT---TTCTTCTCTTGA--------GTATTGTTAACGACAGGATGAATGGATGC----------GCCTCTTTATCCACAAGACACTTTCACAAGCCATACG-GTGAAATTCATGGCAGGAAATTAATGTGACG----GACTAGGTG-----TATTCAG-----TTTTATTAATCCTGAAGCTCAGATGCT-GTGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      292029 160 -   1764207 AACT---TTCTTCTCTTGA--------GTATTGTTAACGACAGGATGAATGGATGC----------GCCTCTTTATCCACAAGACACTTTCACAAGCCATACG-GTGAAATTCATGGCAGGAAATTAATGTGACG----GACTAGGTG-----TATTCAG-----TTTTATTAATCCTGAAGCTCAGATGCT-GTGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      297057 160 -  16742782 AACT---TTCTTCTCTTGA--------GTATTGTTAATGACAGGATGAATGGATGC----------GCCTCTTCATCCACAAGACACTTTCACAAGCCATACG-GTGAAATTCATGGCAGGAAATTAATGTGACG----GACTAGGTG-----TATTCAG-----TTTTATTAATCCTGAAGCTCAGATGCT-GTGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90599270 165 -  91010382 AACT---TTCTTCTTTTGA--------GTGTTGTTAACGACAGCATGAATGGATGT----------GCCTCTTCATCCACAAGACACTTTCACAAGCCATACG-GTGAAATTCATGGCAGGAAATTAATGTGACG----GACTCGCTG-----TATTCGGTTGTATTTTCTTAATCCTGAAGCTCAGATGCT-GTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      194810 160 -    438239 AACT---TTCTTCTCTTGA--------GTATTGTTAGTGACAGGATGAATGGATGC----------GCCTCTTCATCCACAAGACACTTTCACAAGCCATACG-GTGAAATTCATGGCAGGAAATTAATGTGATG----GACTAGGTG-----TATTCAG-----TTTTATTAATCCTGAAGCTCAGATACT-GTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      225289 165 -    514179 AACT---TTCTTCTCTTGA--------GTATTGTTAACGACAGCATGAATGGATGC----------GCCTCTTCATCCACAAGACACTTTCACAAGCCATACG-GTAAAATTCATGGCAGGAAATTAATGTGACG----GACTAGGTG-----TATTCAGTTTTATTTTCTTAATCCTGAAGCTCAGATGCT-GTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203884482 148 + 204313951 AACT---TTTTTCTCTTGA--------CTATTGTTA---ACAGCATTAAGGGATGC----------ACCTCTTCACCCACAAGACACTTTCACAAGCCGTACA-ATGAAATTCTTGACAGGAAATTAA------------------CG-----TTTTCAGTTTTCCTTTCTTAATCTTGAAGCTCTGATGCC-GCGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16038304 162 +  16417988 AACT---TTCTTCTCTTGA--------GTACTGTTA---ACAGCATTAATGGATGC----------ACCTCTTCATCCACAAGACACTTTCACAAGCCGTGCA-ATGAAATTTATGACAGGAAATTAACGTGATG----GACTAGGCG-----TTTTCAGTTTTACTTTCTTAATCTTGAAGCTCAGATGCT-GTGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      125641 161 +    298490 AACT---TTCTTCTCTTGA--------GTATTGTTA---ACAGCATTAACGGATGC----------ACCTCTTCCTCCACAAGACACTTTCACAAG-CGTACA-ATGAAATTAATGTCAGGAAATTAACGTGATG----GACTAGGCG-----TTTTCAGTTTTACGTTCTTAATCTTGAAGCCCAGATGCT-GTGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25451371 153 -  25620257 ACCT---TTCTTCTCTTGA--------GTATTGTTA---ACAGCATTAACGGATGC-------------------TCCACAAGACACTTTCACAAGCCGTACA-ATGAAATTCATGACGGGAAATTAACGTGATG----GACTAGGCG-----TTTTCGGTTTTACTTTCTTAATCTTGAAGCTCAGATGCG-GTGG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11745067 189 +  42124431 AACT---CTCCCCCTGTGGTCTGTGATGTGTTGTCAGCAAGAGCATAAACGTACCCAAAAACCCTTGTCTCTTCACACACAACACA-TTTCATAAACCACATGAATGAAATGCATAATCAGAAGTTACTGTGATG----GACCAGATGTGACATTCTCACCTCTGTTTTCCTAATTTTGAAGTTCAGCAGCTCACAG
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1902432 475 -   2165740 I

a score=768449.000000
s hg38.chr5_KI270793v1_alt    101164 85 +    126136 CAGCTGGGTATAAGATTACAGTTGTTTTC-CGACTGGCT-TTTGCATTATTTCCACATTTTTGA--AT------------GTTTTAC-AGCCACGCCCCTT--------C
s panTro5.chr5             181367408 85 - 181907262 CAGCTGGGTATAAGACTACAGTTGTTTTC-CGACTGGCT-TTTGCATTATTTCCACATTTTTGA--AT------------GTTTTAC-AGCCACGCCCCTT--------C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183086287 85 - 183735486 CAGCTGGGTATAAGACTACAGTTGTTTTC-CGACTGGCT-TTTGCATTATTTCCACATTTTTGA--AT------------GTTTTAC-AGCCACGCCCCTT--------C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179840 85 +    698298 CAGCTGGGTATAAGATTACAGTTGTTTTC-CGACTGGCT-TTTGCATTATTTCCACATTTTTGA--AT------------GTTTTAC-AGCCACGCCCCTT--------C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120597653 87 - 121039945 CAGCTGGGTATAAGATTACAGTTGTTTTC-GGACTGGCT-TTTGCATTATTTCCACATTTTTGAATAT------------GTTTTAC-AGCCACGCCCCTT--------C
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179553192 94 - 180051392 CAGCTAGGTATAAGATTACAGTTATTTTT-GGACTGGC--TTTGCATTATTTCCACATTTTTAAATAC------------ATTTTAC-AGCCACAGCCCTTTCCCATACC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181286042 94 - 181584905 CAGCTAGGTATAAGATTACAGTTATTTTT-GGACTGGG--TTTGCATTATTTCCACATTTTTAAATAC------------ATTTTAC-AGCCACAGCCCTTTCCCATACC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      292189 94 -   1764207 CAGCTAGGTATAAGATTACAGTTATTTTT-GGACTGGC--TTTGCATTATTTCCACATTTTTAAATAC------------ATTTTAC-AGCCACAGCCCTTTCCCATACC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      297217 95 -  16742782 CAGCTAGGTATAAGATTACAGTTATTTTC-GGACTGGCT-TTTGCATTATTTCCACATTTTAAAATAC------------ATTTTAC-AGCCACAGCCCTTTCCCATACC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90599435 95 -  91010382 CAGCTAGGTATAAGATTACAGGTATTTTT-GGACTGGCT-TTTGCATTATTTCCACATTTTTTAATAC------------GTTTTAC-AGCCACAGCCCTTTCCCATACC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      194970 95 -    438239 CAGCTAGGTATAAGATTACAGTTATTTTC-GGACTGGCT-TTTGCATTATTTCCACATTTTAAAATAC------------ATTTTAC-AGCCACAGCCCTTTCCCATACC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      225454 95 -    514179 CAGCTAGGTATAAGATTACAGTTATTTTC-GGACTGGCT-TTTGCATTATTTCCACATTTTTAAATAC------------GTTTTAC-AGCCACAGCCCTTTCCCATACG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203884630 87 + 204313951 TAGCTAGGTGTAAGATGACACTTCTTTTC-AAACTGGCT-TCTGCGTTATTTCCACAGTTTGGAATAT------------GTTTTAT-GGCCATGGCCCTT--------C
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16038466 87 +  16417988 TAGCTGAGTGTAAGATTACAGTTCTTTTC-AAACTGGTT-TTTGCATTATTTCCACATTTTTGAATAT------------GTTTTAT-GGCCCTGACCCTT--------C
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      125802 87 +    298490 TAGCTAAGTGTAAGATTACAGTTCTTTTC-AAACTGGCT-TTTGCATTATTTCCACATTTTTGAATAT------------GTTTTAT-GGCCACGGCCCTT--------C
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25451524 87 -  25620257 TAGCTAGGTGTAAGATTACAGTTCTTTTC-AAACTGGCT-TTTGCATTATTTCCATATTTTTGAATAC------------GTTTTAT-GGCCATGGCCCTT--------C
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1902907 99 -   2165740 caatttggtcaaagcatatgatcttttat-atattattt-ttaatattatctcaatatttttgAGTACTCAGTATTTTGAGTTTCAT-GGTGATGGCCTTT--------G
i otoGar3.GL873745         I 475 C 0
s canFam3.chr34             11745256 88 +  42124431 CGGCTAAGGG--AGCATGCAGGAGTTCTTGGGGATGGTTACTTGCATTATTTTAGCAGCTCTGAGTGT------------GTCATATGGGTCATGGCCCTT--------C
i canFam3.chr34            C 0 I 424

a score=569140.000000
s hg38.chr5_KI270793v1_alt    101249 69 +    126136 CCCATACGTGC------AGGGG--GTCCCTGGACC------ACAAGGGGTCCAGGCCACGGTGGAAGGATCCAGAATGCTATG
s panTro5.chr5             181367493 69 - 181907262 CCCATACGTGC------AGGGG--GTCCCTGGACC------ACAAGGGGTCCAGGCCACGGTGGAAGGATCCAGAATGCTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183086372 69 - 183735486 CCCATATGTGC------AGGGG--GTCCCTGGACC------ACAAGGGGTCCAGGCCACGGTAGAAGGATCCAGAATGCTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179925 69 +    698298 CCCATACGTGC------AGGGG--GTCCCTGGACC------ACAAGGGGTCCAGGCCACGGTGGAAGGATCCAGAATGCTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120597740 69 - 121039945 CCCATAGGTGC------AGGGG--ATCCCTGGACC------ACAGGGGGTCCAGGCCACGGTGGAAGGATCCAGAATGCTGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179553286 69 - 180051392 CCCATACCTAC------AGAGG--GTCCTGGGACC------ACAAGGGTTCCTGGCCACGGTGGAAGGATCCAGAATGCTGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181286136 69 - 181584905 CCCATAACTAC------AGAGG--GTCCTGGGACC------ACAAGGGTTCCTGGCCACAGTGGAAGGATCCAGAATGCTGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      292283 69 -   1764207 CCCATACCTAC------AGAGG--GTCCTGGGACC------ACAAGGGTTCCTGGCCACGGTGGAAGGATCCAGAATGCTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      297312 69 -  16742782 CCCATACCTAC------AGAGG--GTCCCGGGACC------ACAAGGGTTCCTGGCCACGGTGGAAGGATCCAGAATGCTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90599530 69 -  91010382 CCCATACCTGC------AAAGG--ATCCCGGGACC------ACAAGGGGTCCAGGCCACGGTGGAAGGATCCAGAATGCTGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      195065 69 -    438239 CCCATACCTAC------AGAGG--GTCCCGGGACC------ACAAGGGTTCCTGGCCACGGTGGAAGGATCCAGAATGCTGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      225549 69 -    514179 CCCATACCTGC------AGAGG--GTCCTGGGACC------ACAAGAGGTCCAGGCCATGGTGGAAGGATCCAGAATGCTGTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203884717 77 + 204313951 CGAATATATGCGGGGGAGGGGGGGGTCCCAGGACC------ACACGGGGTCCACGCCATGGTGGAAGCATCCAGAATGCGGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16038553 81 +  16417988 CCAATATATGCGGAG--GGGGGCGGTCCCAGGACCGCCAGGACAGGGGGTCCACGCCACAGTGGAAGCATCCAGAATGCAGTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      125889 71 +    298490 CCAATATATGA------AGGGGGTGTCCCAGGACC------ACAGGGGGTCCACGCCATGGTGGAACCATCCAGAATGCGGTT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25451611 74 -  25620257 CCAATATATGCAGG---GGGGGGGGTCCCAGGACC------ACAGGGGGTCCACGCCATGGTGGAAGCATCCAGAATGCGGTG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1903006 52 -   2165740 CTCATGTGTAC------AGGCA---------AACC------CACAGGGATCCAGGCCACTCGGGAGGCATC----------GT
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11745344 424 +  42124431 I

a score=4952610.000000
s hg38.chr5_KI270793v1_alt    101318 609 +    126136  
s panTro5.chr5             181367562 586 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183086441 586 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      179994 606 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120597809 575 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179553355 579 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181286205 576 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      292352 578 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      297381 580 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90599599 580 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      195134 578 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      225618 536 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203884794 517 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16038634 503 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      125960 513 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25451685 493 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1903058 549 -   2165740  
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11745768 529 +  42124431  
i canFam3.chr34            I 424 I 32

a score=191542.000000
s hg38.chr5_KI270793v1_alt    101927 27 +    126136 CCTGCTGT-GGGGGGCAGTGGAGGTGTG
s panTro5.chr5             181368148 27 - 181907262 CCTGCTGT-GGGGGGCAGTGGAGGTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183087027 27 - 183735486 CCTGCTGT-GGGGGGCAGTGGAGGTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      180600 27 +    698298 CCTGCTGT-GGGGGGCAGTGGACGTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120598384 27 - 121039945 CCTGCTGT-GGGGGGCAGTGGAGGTGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179553934 27 - 180051392 CCTGCTGT-GGGGGGCAGTGGTGGTATG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181286781 27 - 181584905 CCTGCTGT-GGGGGGCAGTGGTGGTATG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      292930 27 -   1764207 CCTGCTGT-GGGGGGCAGTGGTGGTATG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      297961 27 -  16742782 CCTGCTGT-GGGGGGCAGTGGTGGTATG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90600179 27 -  91010382 CCTGCTGT-GGGGGGCAGTGGTGGTATA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      195712 27 -    438239 CCTGCTGT-GGGGGGCGGTGGTGGTATG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      226154 28 -    514179 CCTGCTGTGGGGGGGCTGTGGTGGTATG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203885311 26 + 204313951 CGGGCTGT--GGCAGCAGCAGGGGTGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16039137 26 +  16417988 CCAGCTGT--GGGGGCAGCAGGGGTGGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      126473 26 +    298490 CCGGCTGT--GGCGGCAGCAGGGGCGGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25452178 26 -  25620257 CCGGCTGT--GGGGGCAGCAGGGGCGGG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1903607 13 -   2165740 CCACTTGT---------------TCTTG
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11746297 32 +  42124431 I

a score=5299612.000000
s hg38.chr5_KI270793v1_alt    101954 604 +    126136  
s panTro5.chr5             181368175 604 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183087054 604 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      180627 604 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120598411 659 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179553961 606 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181286808 606 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      292957 606 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      297988 606 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90600206 577 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      195739 606 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      226182 579 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203885337 575 + 204313951  
i calJac3.chr2             C 0 I 12
s saiBol1.JH378155          16039163 588 +  16417988  
i saiBol1.JH378155         C 0 I 10
s cebCap1.NW_016108158v1      126499 586 +    298490  
i cebCap1.NW_016108158v1   C 0 I 82
s aotNan1.NW_018503740v1    25452204 583 -  25620257  
i aotNan1.NW_018503740v1   C 0 I 12
s otoGar3.GL873745           1903620 485 -   2165740  
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11746329 684 +  42124431  
i canFam3.chr34            I 32 C 0

a score=274925.000000
s hg38.chr5_KI270793v1_alt    102558 33 +    126136 GGCCCTTGCAGGGTGAAGTCATTGAACTCAGCA
s panTro5.chr5             181368779 33 - 181907262 GGCCCTTGCAGGGTGAAGTCATTGAACTCAGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183087658 33 - 183735486 GGCCCTTGCAGGGTGAAGTCATTGAACTCAGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      181231 33 +    698298 GGCCCTTGCAGGGTGAAGTCATTGAACTCAGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120599070 33 - 121039945 GGCCCTTGCAGGATGAAGTCATCAAACTCAGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179554567 33 - 180051392 GGCCCTCGCAGGATGAAGTCATCCAACTCAGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181287414 33 - 181584905 GGCCCTCGCAGGATGAAGTCATCCAACTCAGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      293563 33 -   1764207 GGCCCTCGCAGGATGAAGTCATCCAACTCAGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      298594 33 -  16742782 GGCCCTCGCAGGATGAAGTCATCCAACTCAGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90600783 33 -  91010382 GGCCCTCGCAGGATGAAGTCATCCAACTCAGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      196345 33 -    438239 GGCCCTCGCAGGATGAAGTCATCCAACTCAGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      226761 33 -    514179 GGCCCTCACAGGATGAAGTCATCCAACTCAGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203885924 33 + 204313951 CCATCCCACAGGATAAAGTCATCCAACTCAGCG
i calJac3.chr2             I 12 C 0
s saiBol1.JH378155          16039761 33 +  16417988 CCACCCTACAGGATAAAGTCATCCAACTCAGCG
i saiBol1.JH378155         I 10 C 0
s aotNan1.NW_018503740v1    25452799 33 -  25620257 CCACCCCACCGGATAAAGTCATCCAACTCAGAG
i aotNan1.NW_018503740v1   I 12 C 0
s otoGar3.GL873745           1904105 28 -   2165740 -----TAGTGGGATAAAGTTGTCTACTTCAGCA
i otoGar3.GL873745         C 0 I 5
s canFam3.chr34             11747013 21 +  42124431 --CCCC----------AGGCGTCCAGCTCAGCA
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      127085 82 +    298490 I

a score=190337.000000
s hg38.chr5_KI270793v1_alt    102591 29 +    126136 CTGTCCTCCTCAGGCC-TCCGCAGC-CCCC------A
s panTro5.chr5             181368812 29 - 181907262 CTGTCCTCCTCAGGCC-CCCGCAGC-CCCC------A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183087691 29 - 183735486 CTGTCCTCCTCAGGCC-CCCACAGC-CCCC------A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      181264 29 +    698298 CTGTCCTCCTCAGGCC-CCCGCAGC-CCCC------A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120599103 29 - 121039945 CTGTCCTCCTCAGGCC-CCCACAGC-CCCC------A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179554600 33 - 180051392 CTGTCCTCCTCAAGCC-CCCGCAGC-CCCCACAG--A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181287447 35 - 181584905 CTGTCCTCCTCAAGCC-CCCGCAGC-CCCCACAGACA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      293596 35 -   1764207 CTGTCCTCCTCAAGCC-CCCGCAGC-CCCCACAGACA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      298627 35 -  16742782 CTGTCCTCCTCAAGCC-CCCGCAGC-CCCCACAGACA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90600816 35 -  91010382 CTGTCCTCCTCAAGCC-TCTGCAGC-CCCCACAGACA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      196378 35 -    438239 CTGTCCTCCTCAAGAC-CCCGCAGC-CCCCACAGACA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      226794 35 -    514179 CTGTCCTCCTGAAGCC-CCCGCAGC-CCCCACAGACA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203885957 20 + 204313951 TTGTCCTCCTCTGGCC----------CCCC-------
i calJac3.chr2             C 0 I 8
s saiBol1.JH378155          16039794 28 +  16417988 TTGTCCTCCTCCGGCC--CTGCAGCTCCCC-------
i saiBol1.JH378155         C 0 I 8
s aotNan1.NW_018503740v1    25452832 29 -  25620257 TTGTCCTCCTCCGGCC-CCTGCAGCCCCGC-------
i aotNan1.NW_018503740v1   C 0 I 8
s canFam3.chr34             11747034 36 +  42124431 CCGTCCAGCTTAGGCCTCCTGGGAC-CCTCACATACC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1904133  5 -   2165740 I
e cebCap1.NW_016108158v1      127085 82 +    298490 I

a score=531696.000000
s hg38.chr5_KI270793v1_alt    102620 69 +    126136 CTCAGATGTCAGAAGACAcatccatcctccatctg--cacccaccccacc-gcccacctgccctttgtccac
s panTro5.chr5             181368841 69 - 181907262 CTCAGACGTCAGAAGACACATCCATCCTCCATCCG--CACCCACCCCACC-GCCCACCTGCCCTTTGTCCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183087720 69 - 183735486 CTCAGACGTCAGAAGACACATCCATCCTCCATCCG--CACCCACCCCACC-GCCCACCTGCCCTTTGTCCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      181293 69 +    698298 CTCAGACGTCAGAAGACACATCCATCCTCCACCCG--CACCCACCCCACC-GCCCACCTGCCCTTTGTCCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120599132 68 - 121039945 CTCAGACGTCAGAAGACACATCCATCCTCCATCCA--CACCCA-CCCACC-GCCCACCTGCCCTCTGTCCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179554633 59 - 180051392 CTCAGATGTCAGAAGACACATCCATCCTCCATCCG--CACCCA-CCTACC-GCCCACCTGCCC---------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181287482 59 - 181584905 CTCAGATGTCAGAAGACACATCCATCCTCCATCCG--CACCCA-CCTACC-GCCCACCTGCCC---------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      293631 59 -   1764207 CTCAGATGTCAGAAGACACATCCATCCTCCATCCG--CACCCA-CCTACC-GCCCACCTGCCC---------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      298662 59 -  16742782 CTCAGATGTCAGAAGACACATCCATCCTCCATCCG--CACCCA-CCTACC-GCCCACCTGCCC---------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90600851 59 -  91010382 CTCAGATGTCAGAAGACACATCCATTCTCCATCCG--CACCCA-CCTACC-GCCCACCTGCCC---------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      196413 59 -    438239 CTCAGATGTCAGAAGACACATCCATCCTCCATCCG--CACCCA-CCTACC-GCCCACCTGCCC---------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      226829 59 -    514179 CTCAGAAGTCAGAAGACGCATCCATCCTCCATTCG--CACCCA-CCTACC-GCCCACCTGCCC---------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203885985 61 + 204313951 CTCAGATGTCAGAAGATATGTCCAT-------CTG--CACCCA-CCGACC-TCCCACCTACCCTCTGtccat
i calJac3.chr2             I 8 C 0
s saiBol1.JH378155          16039830 61 +  16417988 CTCAGACATCAGAAGATGTGTCCAT-------CTG--CACCCA-CCGACC-GCCCACCTGCCCTCTGtccac
i saiBol1.JH378155         I 8 C 0
s cebCap1.NW_016108158v1      127167 61 +    298490 CTCAGACATCAGAAGACATGTCCGT-------CTG--CACCCA-CCAACT-GCCCACCTGCCCTCTgtccgc
i cebCap1.NW_016108158v1   I 82 I 31
s aotNan1.NW_018503740v1    25452869 61 -  25620257 CTCAGACATCAGAAGACACGTCCAT-------CTG--CACCCA-CCGACC-GCCCACCTGCCCTCTGtccac
i aotNan1.NW_018503740v1   I 8 C 0
s canFam3.chr34             11747070 57 +  42124431 CTCTGATACTAGAAGATGCTTCCAC-------CTGGCCATCCA-CCCACCTGCCTACCTGCCCCT-------
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1904133  5 -   2165740 I

a score=3950.000000
s hg38.chr5_KI270793v1_alt    102689 7 +    126136 ctatctg
s panTro5.chr5             181368910 7 - 181907262 CTATCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183087789 7 - 183735486 CTATCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      181362 6 +    698298 CTATCT-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120599200 7 - 121039945 CTATCTG
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203886046 7 + 204313951 ccatcca
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16039891 7 +  16417988 ccgtcca
i saiBol1.JH378155         C 0 C 0
s canFam3.chr34             11747127 3 +  42124431 CTG----
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25452930 0 -  25620257 C
e otoGar3.GL873745           1904133 5 -   2165740 I
e cebCap1.NW_016108158v1      127228 31 +    298490 I
e manLeu1.NW_012110441v1      196472 0 -    438239 C
e chlSab2.chr4              90600910 0 -  91010382 C
e cerAty1.NW_012009470v1      298721 0 -  16742782 C
e colAng1.NW_012118799v1      226888 0 -    514179 C
e macNem1.NW_012012389v1      293690 0 -   1764207 C
e macFas5.chr6             181287541 0 - 181584905 C
e rheMac8.chr6             179554692 0 - 180051392 C

a score=7989966.000000
s hg38.chr5_KI270793v1_alt    102696 944 +    126136  
s panTro5.chr5             181368917 943 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183087796 943 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      181368 938 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120599207 943 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179554692 903 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181287541 903 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      293690 903 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      298721 915 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90600910 915 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      196472 915 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      226888 938 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203886053 943 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16039898 953 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      127259 934 +    298490  
i cebCap1.NW_016108158v1   I 31 C 0
s aotNan1.NW_018503740v1    25452930 933 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11747130 863 +  42124431  
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1904133   5 -   2165740 I

a score=504701.000000
s hg38.chr5_KI270793v1_alt    103640 50 +    126136 TTCTGGTAAGTGG-CCGG-TCCGGCTGTGGAATGCAGGTTCCTGCTGAAGAC
s panTro5.chr5             181369860 50 - 181907262 TTCTGGTAAGTGG-CCGG-TCCGGCTGTGGAATGCAGGTTCCTGCTGAAGAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183088739 50 - 183735486 TTCTGGTAAGTGG-CCGG-TCCGGCTGTGGAATGCAGGTTCCTGCTGAAGAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182306 50 +    698298 TTCTGGTAAGTGG-CCGG-TCCGGCTGTGGAATGCAGGTTTCTGCTGAAGAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600150 43 - 121039945 TTCTGGTAAGTGG-CCGG-TCCAGCTGTGGAATGCAGGTTCCTGC-------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179555595 50 - 180051392 TTCTGGTAAGTGG-CCGG-TCCGGCTGCGGAATGCAGGTTCCTGCTGAAGAC
i rheMac8.chr6             C 0 I 16
s macFas5.chr6             181288444 50 - 181584905 TTCTGGTAAGTGG-CCGG-TCCGGCTGCGGAATGCAGGTTCCTGCTGAAGAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      294593 50 -   1764207 TTCTGGTAAGTGG-CCGG-TCCGGCTGCGGAATGCAGGTTCCTGCTGAAGAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      299636 50 -  16742782 TTCTGGTAAGTGG-CCGG-TCCGGCTGCGGAATGCAGGTTCCTGCTGAAGAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90601825 50 -  91010382 TTCTGGTAAGTGG-CCGG-TCCGGCTGCGGAATGCAGGTTTCTGCTGAAGAC
i chlSab2.chr4             C 0 I 17
s manLeu1.NW_012110441v1      197387 50 -    438239 TTCTGGTAAGTGG-CCGG-TCCGGCTGCGGAATGCAGGTTCCTGCTGAAGAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      227826 50 -    514179 TTCTGGTAAGTGG-CCGG-TCCGGCTGCGGAATGCAGGTTCCTGCTGAAGAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203886996 50 + 204313951 TTCTGGTAAGTGG-CCGA-TCAGGCTGTGGAATGCAGGCTCCTGCTGAAGAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16040851 50 +  16417988 TTCTGGTAAGTGA-CCGG-TCAGGCTGTGGAAGGTATGCTCCTGCTGAAGAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      128193 50 +    298490 TTCTGGTAAGTGA-CCGG-TCAGGCTGTGGAATGCAGGCTGCTGCTGAAGAC
i cebCap1.NW_016108158v1   C 0 I 14
s aotNan1.NW_018503740v1    25453863 48 -  25620257 TTCTGCTAAGTGA-CCGG-TCAGGCTGTGGAATGCAGGCTCGTCCTGCGG--
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1904138 49 -   2165740 TTCTGAACAATTG-CTGGATCCTGTTATGGAATGTGGACTCTTG-TGAACA-
i otoGar3.GL873745         I 5 C 0
s canFam3.chr34             11747993 38 +  42124431 TTCTGACAAGTGGATCCA-CCGTGTTGTGAAATGCACGT-------------
i canFam3.chr34            C 0 C 0

a score=398.000000
s hg38.chr5_KI270793v1_alt    103690 1 +    126136 A
s panTro5.chr5             181369910 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183088789 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182356 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203887046 1 + 204313951 G
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16040901 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25453911 0 -  25620257 C
e otoGar3.GL873745           1904187 0 -   2165740 C
e cebCap1.NW_016108158v1      128243 14 +    298490 I
e canFam3.chr34             11748031 0 +  42124431 C
e nomLeu3.chr6             120600193 0 - 121039945 C
e manLeu1.NW_012110441v1      197437 0 -    438239 C
e chlSab2.chr4              90601875 17 -  91010382 I
e cerAty1.NW_012009470v1      299686 0 -  16742782 C
e colAng1.NW_012118799v1      227876 0 -    514179 C
e macNem1.NW_012012389v1      294643 0 -   1764207 C
e macFas5.chr6             181288494 0 - 181584905 C
e rheMac8.chr6             179555645 16 - 180051392 I

a score=23543.000000
s hg38.chr5_KI270793v1_alt    103691 8 +    126136 ATAGCGAG
s panTro5.chr5             181369911 8 - 181907262 ATAGCGAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183088790 8 - 183735486 ATAGCGAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182357 8 +    698298 ACAGCGAG
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181288494 8 - 181584905 ACAGCGAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      294643 8 -   1764207 ACAGCGAG
i macNem1.NW_012012389v1   C 0 I 8
s cerAty1.NW_012009470v1      299686 8 -  16742782 ACAGCGAG
i cerAty1.NW_012009470v1   C 0 I 8
s manLeu1.NW_012110441v1      197437 8 -    438239 ACAGCGAG
i manLeu1.NW_012110441v1   C 0 I 9
s colAng1.NW_012118799v1      227876 8 -    514179 ACAGCGAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203887047 5 + 204313951 ---CCGGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16040902 5 +  16417988 ---CCGGA
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1904187 2 -   2165740 ------AG
i otoGar3.GL873745         C 0 I 1
e aotNan1.NW_018503740v1    25453911 0 -  25620257 C
e cebCap1.NW_016108158v1      128243 14 +    298490 I
e canFam3.chr34             11748031 0 +  42124431 C
e nomLeu3.chr6             120600193 0 - 121039945 C
e chlSab2.chr4              90601875 17 -  91010382 I
e rheMac8.chr6             179555645 16 - 180051392 I

a score=-8558.000000
s hg38.chr5_KI270793v1_alt    103699 17 +    126136 GGGCTGTGTGAAGACAC
s panTro5.chr5             181369919 17 - 181907262 GGGCTGTGTGAAGACAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183088798 17 - 183735486 GGGCTGTGTGAAGACAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182365 17 +    698298 GGGCTGTGTGAAGACAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600193  9 - 121039945 --------TGAAGACAC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181288502  8 - 181584905 -----ACGTGAGG----
i macFas5.chr6             C 0 C 0
s colAng1.NW_012118799v1      227884 10 -    514179 -----ATGTGCGGCC--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203887052  8 + 204313951 --GTCCTGCG-------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16040907  8 +  16417988 --GTCCTGCG-------
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1904190 11 -   2165740 GGGCTTTGCAG------
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11748031  8 +  42124431 --GTGCTGCG-------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25453911  0 -  25620257 C
e cebCap1.NW_016108158v1      128243 14 +    298490 I
e manLeu1.NW_012110441v1      197445  9 -    438239 I
e chlSab2.chr4              90601875 17 -  91010382 I
e cerAty1.NW_012009470v1      299694  8 -  16742782 I
e macNem1.NW_012012389v1      294651  8 -   1764207 I
e rheMac8.chr6             179555645 16 - 180051392 I

a score=890.000000
s hg38.chr5_KI270793v1_alt    103716 1 +    126136 A
s panTro5.chr5             181369936 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183088815 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182382 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600202 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203887060 1 + 204313951 G
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16040915 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      128257 1 +    298490 G
i cebCap1.NW_016108158v1   I 14 C 0
s canFam3.chr34             11748039 1 +  42124431 G
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25453911 0 -  25620257 C
e otoGar3.GL873745           1904201 0 -   2165740 C
e manLeu1.NW_012110441v1      197445 9 -    438239 I
e chlSab2.chr4              90601875 17 -  91010382 I
e cerAty1.NW_012009470v1      299694 8 -  16742782 I
e colAng1.NW_012118799v1      227894 0 -    514179 C
e macNem1.NW_012012389v1      294651 8 -   1764207 I
e macFas5.chr6             181288510 0 - 181584905 C
e rheMac8.chr6             179555645 16 - 180051392 I

a score=622444.000000
s hg38.chr5_KI270793v1_alt    103717 65 +    126136 CCTGGGGCCCCT--GTGCACCCTTGGGCCGCCCTGT------GGGGTCTGCGCAGCCCCAGGCCCTGCGTTTA
s panTro5.chr5             181369937 65 - 181907262 CCTGGGGCACCT--GTGCACCCTTGGGCCGCCCTGT------GGGGTCTGCGCAGCCCCAGGCCCTGCGTTTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183088816 65 - 183735486 CCTGGGGCACCT--GTGCACCCTTGGGCCGCCCTGT------GGGGTCTGCGCAGCCCCAGGCCCTGCGTTTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182383 65 +    698298 CCTGGGGCCCCT--GTGCACCCTTGGGCCGCCCTGT------GGGGAGTGCGCAGCCCCAGGCCCTGCGTTTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600203 65 - 121039945 CCTGGGGCCCCT--GTGCACCCTTGGGCCGCCCTGT------GAGGTCTGCGCAGCCCCAGGCCCTGCGTTTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179555661 65 - 180051392 CCCGGGGGCCCC--GTGCACCCTCGGGCCGCCCTGT------GAGGTCTGCGCAGCCCCAGGGCCCGCGTTTA
i rheMac8.chr6             I 16 C 0
s macFas5.chr6             181288510 65 - 181584905 CCCGGGGGCCCC--GTGCACCCTCGGGCCGCCCTGT------GAGGTCTGCGCAGCCCCAGGGCCCGCGTTTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      294659 65 -   1764207 CCCGGGGGCCCC--GTGCACCCTCGGGCCGCCCTGT------GAGGTCTGCGCAGCCCCAGGGCCCGCGTTTA
i macNem1.NW_012012389v1   I 8 C 0
s cerAty1.NW_012009470v1      299702 65 -  16742782 CCCGGGGGCCCC--GTGCACCCTCGGCCCGCCCTGT------GAGGTCTGCGCAGCCCCAGGCCCCGCGTTTA
i cerAty1.NW_012009470v1   I 8 C 0
s chlSab2.chr4              90601892 65 -  91010382 -CCGGGGGCCCC-TGTGCACCCTTGGGCCGCCCTGT------GAGGTCTGCGCAGCCCCAGGCCCTGCATTTA
i chlSab2.chr4             I 17 C 0
s manLeu1.NW_012110441v1      197454 64 -    438239 -CCGGGGGCCCC--GTGCACCCTCGGCCCGCCCTGT------GAGGTCTGCGCAGCCCCAGGCCCCGCGTTTA
i manLeu1.NW_012110441v1   I 9 M 870
s colAng1.NW_012118799v1      227894 65 -    514179 --CGGGGGCCCCCTGTGCACCCTTGGGCCGCCCTGT------GAGGTCTGCGCAGCCCCAGGCCCTGCGTTTA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203887061 65 + 204313951 CCCGGGGCCCCT--GCGCACCCTTGGGCCACCCTGT------GGGGTCTGCGCAACCACAAGCGCTGCTTGTA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16040916 65 +  16417988 CCCGGGGCCCCT--GCGCACCCTTGGGCCGCCCCGT------GGGGTCTGCGCAACCCCAGGCGCCGCGTGTA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      128258 65 +    298490 CCCGGGGCCCCT--GCGCACCCTTGGGCCGCCCCGT------GGGGTCTGCGCAACCCCAGGCGCCGCGTGTA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25453911 65 -  25620257 CCCGGGGCCCCT--GCACACCCTTGGGCCGCCCCGT------GGGGTCTGCGCAACCCCAGGCGCTGCGTGTA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1904201 43 -   2165740 TCTGGGCCCCTT--CTGAACCCT----------------------------ACAGCTTCAGGTCTCGTGTTTA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11748040 66 +  42124431 --Cctggcccct--ctggcccctctggccccCGCCTCTAGCGCGGGTCCGCA-AGCCCCA--TCCTGTGTTAG
i canFam3.chr34            C 0 C 0

a score=454752.000000
s hg38.chr5_KI270793v1_alt    103782 60 +    126136 TGAAGGAG----GGTTGGGGCGAGCGCACCCACAGCTG--CCCGGGCATCCCAGGAGCTGCGCGGA---------------------------------
s panTro5.chr5             181370002 60 - 181907262 TGAAGGAG----GGTTGGGGCGAGCGCACCCACAGCTG--CCCGGGCATCCCAGGAGCTGCGCGGA---------------------------------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183088881 60 - 183735486 TGAAGGAG----GGTTGGGGCGAGCGCACCCACAGCTG--CCCGGGCATCCCAGGAGCTGCGCGGA---------------------------------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182448 60 +    698298 TGAAGGAG----GGTTGGGGCGAGCGCACCCACAGCTG--CCCGGGCATCCCAGGAGCTGCGCGGA---------------------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600268 61 - 121039945 TGTAGGAA----GGTTGGGGCGAGCGCACCCGCAACCTGCCCCAGGCATCCCA-GAGCTGCGCGGA---------------------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179555726 57 - 180051392 TGAAGGA-------TTGGGGCGAGCGCACCCGCAGCTG--CCCGGGCACCCCACGAGCTGAGCGGA---------------------------------
i rheMac8.chr6             C 0 I 18
s macFas5.chr6             181288575 57 - 181584905 TGAAGGA-------TTGGGGCGAGCGCACCCGCAGCTG--CCCGGGCACCCCACGAGCTGAGCGGA---------------------------------
i macFas5.chr6             C 0 I 18
s macNem1.NW_012012389v1      294724 57 -   1764207 TGAAGGA-------TTGGGGCGAGCGCACCCGCAGCTG--CCCGGGCACCCCACGAGCTGAGCGGA---------------------------------
i macNem1.NW_012012389v1   C 0 I 18
s cerAty1.NW_012009470v1      299767 57 -  16742782 TGAAGGA-------TTGGGGCGAGCGGACCCGCAGCTG--CCCGGGCACCCCACGAGCTGAGCGGA---------------------------------
i cerAty1.NW_012009470v1   C 0 I 18
s chlSab2.chr4              90601957 57 -  91010382 TGACCGA-------TTGGGGCGAGCGCACCCGCAGCTG--CCCGGGCACCCCACGAGCTGCGCGGA---------------------------------
i chlSab2.chr4             C 0 I 18
s colAng1.NW_012118799v1      227959 57 -    514179 TGAAGGA-------TTGGGGCGAGCGCACCCGCAGCTG--CCCGGGCACCCTAGGAGCTGCGCGGA---------------------------------
i colAng1.NW_012118799v1   C 0 M 1135
s calJac3.chr2             203887126 60 + 204313951 TGAACGAG----GGTTGGGGCGAGCGCACTCGCAGCTG--TCCCGGCACCTCAAGAGCTGCGCGGA---------------------------------
i calJac3.chr2             C 0 I 18
s saiBol1.JH378155          16040981 60 +  16417988 TGAACGAG----GGTCGGGGCGAGCGCACTCGCAGCTG--TCCGGGCACCTCAGGAGCTGCGCGGA---------------------------------
i saiBol1.JH378155         C 0 I 20
s cebCap1.NW_016108158v1      128323 60 +    298490 TGAACGAG----GGTAGGGGCGAGCGCGCTCGCAGCTG--TCCCGGTACCTCAGGAGCTGCGCGGA---------------------------------
i cebCap1.NW_016108158v1   C 0 I 18
s aotNan1.NW_018503740v1    25453976 60 -  25620257 TGAACGAG----GGTTGGGGCGAACGCACTCGCGGCTG--TCCCGGCACCTCAGGAGCTGCGCGGA---------------------------------
i aotNan1.NW_018503740v1   C 0 I 18
s otoGar3.GL873745           1904244 61 -   2165740 TGGATAAG----GACTGGGGTGAGGGTGCCCACACCTC-CCCCAGGAAACTCAGGAGGAGCTCAGG---------------------------------
i otoGar3.GL873745         C 0 I 33
s canFam3.chr34             11748106 96 +  42124431 TGCAGAGGCAGCGTCTGGGGCCTGAGCACCCGCAGCCG--CCC-GGCACCCGGGGCGCAGAGCGGACGCCGCCGCCGAGGGGCGCCCGAGGCACCCGGA
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1      197518 870 -    438239 M

a score=265347.000000
s hg38.chr5_KI270793v1_alt    103842 41 +    126136 Accg-cctgtcccgct------------------------------------------gcc---------------ccgcgc---tgtgctcc--------------ccacgcccc
s panTro5.chr5             181370062 41 - 181907262 Accg-cctgtcccgct------------------------------------------gcc---------------ccgcgc---tgtgctcc--------------ccacgcccc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183088941 41 - 183735486 Accg-cctgtcccgct------------------------------------------gcc---------------ccgcgc---tgtgctcc--------------ccacgcccc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182508 55 +    698298 ACCG-CCTGTcccgcc------------------------------------------gcc---------------ctgcgc---tgtgctccccccgcccccggctccccgcccc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600329 42 - 121039945 TCCGCCCTGTCCCGCC------------------------------------------GCC---------------CCCCGC---TGTGCTCC--------------CCCCGCCCC
i nomLeu3.chr6             C 0 I 373
s rheMac8.chr6             179555801 41 - 180051392 ACCG-CCTGTcccgcc------------------------------------------gcc---------------ccgcgc---tgtgctcc--------------cctcgcccc
i rheMac8.chr6             I 18 I 7
s macFas5.chr6             181288650 41 - 181584905 ACCG-CCTGTcccgcc------------------------------------------gcc---------------ccgcgc---tgtgctcc--------------cctcgcccc
i macFas5.chr6             I 18 I 7
s macNem1.NW_012012389v1      294799 41 -   1764207 ACCG-CCTGTcccgcc------------------------------------------gcc---------------ccgcgc---tgtgctcc--------------cctcgcccc
i macNem1.NW_012012389v1   I 18 I 7
s cerAty1.NW_012009470v1      299842 41 -  16742782 ACCG-CCTGTcccgcc------------------------------------------gcc---------------ccgcgc---tgtgctcc--------------cctcgcccc
i cerAty1.NW_012009470v1   I 18 I 7
s chlSab2.chr4              90602032 41 -  91010382 ACCG-CCTGTCCCGCC------------------------------------------GCC---------------CAGCGC---TGTGCTCC--------------CCTCGCCCC
i chlSab2.chr4             I 18 I 7
s calJac3.chr2             203887204 41 + 204313951 ACGG-CCCATCCCACC------------------------------------------GCC---------------CCCCGC---CGTCCTCC--------------ACTAGCCGC
i calJac3.chr2             I 18 I 8
s saiBol1.JH378155          16041061 41 +  16417988 ACGG-GCCGTCCCGCC------------------------------------------GCC---------------CCCCGC---AGTCCTCC--------------GCTCGCCGC
i saiBol1.JH378155         I 20 I 8
s cebCap1.NW_016108158v1      128401 41 +    298490 ACTG-CCGGTCCCGCC------------------------------------------GCC---------------CCCCGC---AGTCCTCC--------------ACTCGCCGC
i cebCap1.NW_016108158v1   I 18 I 8
s aotNan1.NW_018503740v1    25454054 41 -  25620257 ACGG-CCCGTCCCGCC------------------------------------------GCC---------------CCCCGC---CGTCCTCC--------------ACTCGCCGT
i aotNan1.NW_018503740v1   I 18 I 8
s otoGar3.GL873745           1904338 83 -   2165740 ACTG-ACTGTCCCACCTTGCAGCAGAGTCCACAGGGTCCCAGGCTCTGCCCACCGGCAATC---------------CCGCGC---TGCGCTCC--------------ACACCCCCG
i otoGar3.GL873745         I 33 I 3
s canFam3.chr34             11748202 59 +  42124431 GCCC-CCTCTCCCCCT------------------------------------------GCCGCCCTCGGCCAAGGGCCCCGCCGGCGCGCGAC--------------CCACGCCCT
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M

a score=165003.000000
s hg38.chr5_KI270793v1_alt    103883 22 +    126136 AGGAAGGCGGCCG-CGCAGTCCC---
s panTro5.chr5             181370103 22 - 181907262 AGGAAGGCGGCCG-CGCGGTCCC---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183088982 22 - 183735486 AGGAAGGCGGCCG-CGCAGTCCC---
i panPan2.chr5             C 0 M 368
s gorGor5.CYUI01015805v1      182563 22 +    698298 AGGAAGGCGGCCG-CGCAGTCCC---
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179555849 22 - 180051392 AGGGAGGCGGTCG-CGCAGTCCC---
i rheMac8.chr6             I 7 C 0
s macFas5.chr6             181288698 22 - 181584905 AGGGAGGCGGTCG-CGCAGTCCC---
i macFas5.chr6             I 7 C 0
s macNem1.NW_012012389v1      294847 22 -   1764207 AGGGAGGCGGTCG-CGCAGTCCC---
i macNem1.NW_012012389v1   I 7 C 0
s cerAty1.NW_012009470v1      299890 22 -  16742782 AGGGAGGCGGTCG-CGCAGTCCC---
i cerAty1.NW_012009470v1   I 7 C 0
s chlSab2.chr4              90602080 22 -  91010382 AGGGAGGCGGTAG-CGCAGTCCC---
i chlSab2.chr4             I 7 C 0
s calJac3.chr2             203887253 22 + 204313951 AGGGAGGCGGCAG-CGCAGTCCC---
i calJac3.chr2             I 8 C 0
s saiBol1.JH378155          16041110 22 +  16417988 AGGGAGGCGGCCG-CGCAGTCCC---
i saiBol1.JH378155         I 8 C 0
s cebCap1.NW_016108158v1      128450 22 +    298490 AGGGAGGCGGCCG-CGCAGTCCC---
i cebCap1.NW_016108158v1   I 8 C 0
s aotNan1.NW_018503740v1    25454103 22 -  25620257 AGGGAGGCGGCCG-CGCAGTCCC---
i aotNan1.NW_018503740v1   I 8 C 0
s otoGar3.GL873745           1904424 23 -   2165740 AGGGAGGCGACCATTATGGTCCT---
i otoGar3.GL873745         I 3 I 15
s canFam3.chr34             11748261 22 +  42124431 AAGCAGGCGGTTG-CGC---CCCGGC
i canFam3.chr34            C 0 C 0
e nomLeu3.chr6             120600371 373 - 121039945 I
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M

a score=177781.000000
s hg38.chr5_KI270793v1_alt    103905 43 +    126136 GGGCTCGCTCTTGCCGCGACCT----CCCGGACCTC-------CAGGCCGCGGG-----
s panTro5.chr5             181370125 43 - 181907262 GGGATCGCTCTTGCCGCGACCT----CCCGGACCTC-------CAGGCCGCGGG-----
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182585 43 +    698298 GGGCTCGCTCTTGCCGCGACCT----CCCGGACCTC-------CAGGCCGCGGG-----
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179555871 43 - 180051392 GGGCTCGCTCTTGCCGCGACCT----CCCGGACCTC-------CAGGCCGCAGG-----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181288720 43 - 181584905 GGGCTCGCTCTTGCCGCGACCT----CCCGGACCTC-------CAGGCCGCAGG-----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      294869 43 -   1764207 GGGCTCGCTCTTGCCGCGACCT----CCCGGACCTC-------CAGGCCGCGGG-----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      299912 43 -  16742782 GGGCTCGCTCTTGCCGCGACCT----CCCGGACCTC-------CAGGCCGCGGG-----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90602102 43 -  91010382 GGGCTCGCTCTTGCCGCGACCT----CCCAGACCTC-------CAGGCCGCGGG-----
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203887275 37 + 204313951 GGGCTAGCCCTCGCCGCGACCT----CGCCGACCTC-------CAGGC-----------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16041132 43 +  16417988 GGGCTGGCCCTTGCCGCGACCT----CGCGGACCCC-------CAGGCTCCGGG-----
i saiBol1.JH378155         C 0 M 360
s cebCap1.NW_016108158v1      128472 36 +    298490 GGGCTAGCCCTCGCCGCGACCT----CGCGGACCTC-------CAGG------------
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25454125 33 -  25620257 GGTCTGGCCCTCGCTGCGACCT------CCGCGCTC-------CAG-------------
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1904462 41 -   2165740 GGGC---------CAGCGCCCT----TCCAGTCCCCGCAAGGGGAGACCGCATG-----
i otoGar3.GL873745         I 15 I 1
s canFam3.chr34             11748283 43 +  42124431 -------------CGACGCCCTCCAGCCCAGGCTCC---AGCGCAGGGCGGGAGGGGGG
i canFam3.chr34            C 0 C 0
e nomLeu3.chr6             120600371 373 - 121039945 I
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M
e panPan2.chr5             183089004 368 - 183735486 M

a score=1467947.000000
s hg38.chr5_KI270793v1_alt    103948 305 +    126136 CTCCG------GG----GGAGGGTGGGCACCAGGGAGCGCGG----------------------------------------------------GG-------TGGGCGT-GCGCGGGCGGGGCGGGCGTGC----------CGGGAGC----TGCGGCGGTGTCTGCGCTCGCGAGTGCGCGGCGGGGGCGGGCAGGCTCCGCCCCGGGGCGGGAGGGGGCCGCGGGATTAAAGGCCACCCCGGCGGGCGGGGATCGGACTGTAGCCGGTACCGGCAC-CGGAGCGCGCC-GGGTCCT------CGCCGG-----------------GTCCCAGCCCCGCGCGTC--GGCCCAGCCCAGCCGGGACCCCCCGCGACATGCGCGTCCCAGCCCTGCGCTGAGC--AGGCGGCAATGTG
s panTro5.chr5             181370168 305 - 181907262 CTCCG------GG----GGAGGGTGGGCACCAGGGAGCGCGG----------------------------------------------------GG-------TGGGCGT-GCGCGGGCGGGGCGGGCGTGC----------CGGGAGC----TGCGGCGGTGTCTGCGCTCGCGAGTGCGCGGCGGGGGCGGGCAGGCTCCGCCCCGGGGCGGGAGGGGGCCGCGGGATTAAAGGCCACCCCGGCGGGCGGGGATCGGACTGGAGCCGGTACCGGCAC-CGGAGCGCGCC-GGGTCCT------CGCCGG-----------------GTCCCAGCCCCGCGCGTC--GGCCCAGCCCAGCCGGGACCCCCCGCGACATGCGCGTCCCAGCCCTGCGCTGAGC--AGGCGGCAATGTG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182628 303 +    698298 CTCCG------GG----GGAGGGTGGGCACCAGGGAGCGCGG----------------------------------------------------GG-------TGGGCGT-GCGCGGGCGGGGCGGGCGTGC----------CGGCAGC----TGCGGCGGTGTCTGCGCTCGCGAGTGCGCGGCGGGGGCGGGCAGGCTCCGCCCCGGGGCGGGAGGGGGCCGCGGGATTAAAGGCCACCCCGGCGGGCGGGGATCGGACTGTAGCCGGTACCGGCAC-CGGAGCGCGCC-GGGTCCT------CGCCGG-----------------GTCCCAG-CCCGCGCGTC--GGCCCAGCCCAGCCGGGA-CCCCCGCGACATGCGCGTCCCAGCCCTGCGCTGAGC--AGGCGGCAATGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179555914 305 - 180051392 CTCCG------GG----GAAGGGTGGGGACTGGGGAGCGCcg----------------------------------------------------gg-------tgggcgt-gcgcgggcggggcgggcgtgc----------cgggagc----tgctgcggtgtccgcgctcgcgagtgcgcggcgggggcgggcaggcTCCGCCCCGGGGCGGGAGGGGGCCGCGGGATTAAAGGCCACCCCGGCGGGCGGGGATCGGACTGTCGCAGGCACCGGCAC-CGGAGCGCGCC-GGGTCTT------CGCCGG-----------------GTCCCAGCCCCGCGCGAC--GGCCGAGCCCAGCCGGGACCCCCCGCGACATGCGCGTCCCAGCCCCGCACTAAGC--AGGCGGCGATGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181288763 305 - 181584905 CTCCG------GG----GAAGGGTGGGGACTGGGGAGCGCcg----------------------------------------------------gg-------tgggcgt-gcgcgggcggggcgggcgtgc----------cgggagc----tgctgcggtgtccgcgctcgcgagtgcgcggcgggggcgggcaggcTCCGCCCCGGGGCGGGAGGGGGCCGCGGGATTAAAGGCCACCCCGGCGGGCGGGGATCGGACTGTCGCAGGCACCGGCAC-CGGAGCGCGCC-GGGTCTT------CGCCGG-----------------GTCCCAGCCCCGCGCGAC--GGCCGAGCCCAGCCGGGACCCCCCGCGACATGCGCGTCCCAGCCCCGCACTAAGC--AGGCGGCGATGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      294912 305 -   1764207 CTCCG------GG----GAAGGGTGGGGACTGGGGAGCGCcg----------------------------------------------------gg-------tgggcgt-gcgcgggcggggcgggcgtgc----------cgggagc----tgctgcggtgtccgcgctcgcgagtgcgcggcgggggcgggcaggcTCCGCCCCGGGGCGGGAGGGGGCCGCGGGATTAAAGGCCACCCAGGCGGGCGGGGATCGGACTGTCGCAGGCACCGGCAC-CGGAGCGCGCC-GGGTCTT------CGCCGG-----------------GTCCCAGCCCCGCGCGAC--GGCCGAGCCCAGCCGGGACCCCCCGCGACATGCGCGTCCCAGCCCCGCACTAAGC--AGGCGGCGATGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      299955 305 -  16742782 CTCCG------GG----GAAGGGTGGGGACTGGGGAGCGCcg----------------------------------------------------gg-------tgggcgt-gcgcgggcggggcgggcgtgc----------cgggagc----tgctgcggtgtccgcgctcgcgagtgcgcggcgggggcgggcaggcTCCGCCCCGGGGCGGGAGGGGGCCGCGGGATTAAAGGCCACCCCGGCGGGCGGGGATCGGACTGTCGCAGGCACCGGCAC-CGAAGCGCGCC-GGGTCTT------CGCCGG-----------------GTCCCAGCCCCGCGCGAC--GGCCGAGCCCAGCCGGGACCCCCCGCGACATGCGCGTCCCAGCCCCGCGCTAAGC--AGGCGGCGATGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90602145 304 -  91010382 CT-CG------GG----GAAGGGTGGGGACAGGGGAGCGCcg----------------------------------------------------gg-------tgggcgt-gcgcgggcggggcgggcgtgc----------cgggagc----tgcggcggtgtctgcgctcgcgagtgcgcggcgggggcgggcaggcTCCGCCCCGGGGCGGGAGGGGGCCGCGGGATTAAAGGCCACCCCGGCGGGCGGGGATCGGACTGTCGCAGGCACCCGCAC-CGGAGCGCGCC-GGGTCTT------CGCCGG-----------------GTCCCAGCCCCGCGCGAC--GGCCGAGCCCAGCCGGGACCCCCCGCGACATGCGCGTCCCAGCCCCGCGCTAAGC--AGGAGGCGATGTG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203887312 342 + 204313951 -TCCG------GG----GGAAGGTGGGGACCGGGGAGCGCCA-GGCGAAGGAggcgc----------------------------ggccggccggg-------tgggcgt-gcgcgggcggggcgggcgtgc----------cgggagc----cgcggcgATGTCTGCGCTCGCGAGTgcgcggcgggggcgggcaggccccgccccggcgcgggagggggccgcgAGATTAAAGGCCACCCCGGTGGGCGGGGATCCGCCTGTCGCCGGCACCGGCCC-CGCAGCGCGCCGGGGTCCT------CGCCGATTCGC-GCGTCCCGCG-GCCCCAGCCCCGCGCGTC--GGCCGAGCCCAG-CGGGACCCCTCGCGACCTTCGCGTCCTGGCCCCGCGCTGAGC--CGGCGGCGATGTG
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      128508 343 +    298490 CTCTG------GG----GGAGGGTGGGGACCCGGGAGCGCCG-GGCGGCGGCGGCGC----------------------------GGCGGGCCGGG-------TGGGCGT-GCGCGGGCGGGGCGGGCGTGC----------AGGGAGT----GGCGGCGATGTCTGCGCTCGCGAGTGCGCGGCGGGGGCGGGCAGGCCCCGCCCCGAGGCGGGAGGGGGCCGTGGGATTAAAGGCCACCCGGGTGGGCGGGGATCCGACTGTCGCCGGCACCGGCAC-CGGAGCGCGCCGGGGTCCT------CGCTGAGTTGC-GCGTCCCGCG-GCCCCAGCCCCGCGCGTC--GGCCGAGCCCAG-CGGGACCCCTCGCGACCTGCGCGTCCTGGCCCCGCGCTGAGC--CGGCGGCGATGTG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25454158 333 -  25620257 -CTCC------GG----GGAGGGTGGGA--CCGGGGGCGCCGCGGCGGTGGAGGCGC-----------------------------GCCGGCCGGG-------TGGGCGTGGCGCGGGCGGGGCGGGCGTGC-----------GGGAGC----CGCGGCGATGTCTGCGCTCGCCAGTGCGCGGCGGGG--CGGCAGG-CCCGCCCCGGGACGGGAGGGG--CGCGGGATTTAAGGCCACCCC-GTTGGCGGGGATCCGACTGTCGCCGGCACCGGCAC-CGGAGCGCGCCGGGGTCCT------CGCCGAGTCGC-GCGTCCCGCGCGCCCCAGCCCC-CGCGGCCGCGCCGAGCCCAG-CGGGACCCCTCGCGACCTGCGC-TCCTGGCCCCGCGCTGAGC----GCGGCGATGTG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1904504 302 -   2165740 ATCAG------GAGCGCGTGGGGTGGTGAGGGAGAAAGGCTG----------------------------------------------------GGGTGCAGTTGGGCGC-G-GCCGGTTGGCCAGGGGTGACGGCACGGCGCGGGAGCAGAGTGAGGCGCAGGCTGCACTCTCTAACTCGCTGCGGGGGCGGGAAggccccgccccggggcgggcgggAACCACCGGATTAAAGGCCGCCGGGGCGGG-GGGAACAGGACTGCCGGCGGCACTG---------GAGCGCT-GAGCCCC-----------------------------GCTCTGGACTCAAGCAGC----------------TGGCTTCGCCGCGACATGCGCACCGGCACAGGGCTCTGAGCGGAGGCGGTGATGTC
i otoGar3.GL873745         I 1 C 0
s canFam3.chr34             11748326 378 +  42124431 CGCTGGCGGGCGG----GAGGGGCGGAGA--GGGACGCGCAG-GGGGCTGAGCGCGCGCGTACGGAGGTGAGGTCAGGGCGACCCGGCGGCCGGGG-------TGGGCGT-GTGCAGGCCTGGCGGGCGTGC----------CGAGAGC---GTGCGACGGTGTCCGCGCTCGCGTgcgcgccgcgggggcgggaaggccccgccccggggcgggagggggccgccggATTAAAGGCCACC--GGCGGGCGGGGACCGGGC-----CAGCCGCCCTCGCTCCGAGTGCGCT-AGGCGCCGCCTGACGCGGGTCCCCAGGGTCCGACG-GCTCCGGCGCAGCGCGTC-CCGCCTGGCGCAG-CAGGA-CCCACGCGGCATGAGCGTCCGCACGGGGTGCTGAGCGGCGGCGGCGATGTC
i canFam3.chr34            C 0 C 0
e saiBol1.JH378155          16041175 360 +  16417988 M
e nomLeu3.chr6             120600371 373 - 121039945 I
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M
e panPan2.chr5             183089004 368 - 183735486 M

a score=157955.000000
s hg38.chr5_KI270793v1_alt    104253 28 +    126136 GGGACTcggggcccggggccccgaccgg
s panTro5.chr5             181370473 28 - 181907262 GGGACTcggggcccggggccccgaccgg
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182931 27 +    698298 GGGACTC-GGGCCCGGGGCCCCGACCGg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600744 27 - 121039945 GGGACTc-gggcgcggggccccggccgg
i nomLeu3.chr6             I 373 C 0
s rheMac8.chr6             179556219 28 - 180051392 GGGACTCGGGTCCCGGGGCCCCGGCCGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289068 28 - 181584905 GGGACTCGGGTCCCGGGGCCCCGGCCGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295217 28 -   1764207 GGGACTCGGGTCCCGGGGCCCCGGCCGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300260 28 -  16742782 GGGACTCGGGTCCCGGGGCCCCGGCCGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90602449 28 -  91010382 GGGACTCGGGTCCCGGGGCCCCGGCCGG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203887654 28 + 204313951 GGGACTccgggcgcggggccccggcggg
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      128851 28 +    298490 GGGACCCCGGGCGCGGGGCCCCGGCCGg
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25454491 27 -  25620257 GGGACTCCGCGCG-GGGGCCCCGGCCTG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1904806 28 -   2165740 GGGGCGCCAGGACCCCGGCCCAGGCTGT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11748704 28 +  42124431 GGGGCGCGGGGCTCCGGGCTGCAGCCGG
i canFam3.chr34            C 0 C 0
e saiBol1.JH378155          16041175 360 +  16417988 M
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M
e panPan2.chr5             183089004 368 - 183735486 M

a score=598310.000000
s hg38.chr5_KI270793v1_alt    104281 78 +    126136 gggctgct------gctggcgctggc-gctgg------------------gcgggctggcgcgggcCGGGGGCGTCGAGGTGGAGCCCGGCGGCGCGCACGGC
s panTro5.chr5             181370501 78 - 181907262 gggctgct------gctggcgctggc-gctgg------------------gcggggtggcgcgggccgggggcgTCGAGGTGGAGCCCGGCGGCGCGCACGGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      182958 78 +    698298 gggctgct------gctggcgctggc-gctgg------------------gcgggctggcgcgggcCGGGGGCGTCGAGGTGGAGCCCGGCGGCGCGCACGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600771 78 - 121039945 gggctgct------gctggcgctggc-gctgg------------------gcgggctggcgcgggccgggggcgtcgaggtggagcccggcggcgcgcacggc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179556247 78 - 180051392 GGGCTGCT------GCTGGCGCTGGC-GCTGG------------------GAGGGCTGGCGCGGGCCGGGGGCGTGGAGGTGGAGCCCGGCGACGCGCACGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289096 78 - 181584905 GGGCTGCT------GCTGGCGCTGGC-GCTGG------------------GAGGGCTGGCGCGGGCCGGGGGCGTGGAGGTGGAGCCCGGCGACGCGCACGGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295245 78 -   1764207 GGGCTGCT------GCTGGCGCTGGC-GCTGG------------------GAGGGCTGGCGCGGGCCGGGGGCGTGGAGGTGGAGCCCCGCGACGCGCACGGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300288 78 -  16742782 GGGCTGCT------GCTGGCGCTGGC-GCTGG------------------GCGGGCTGGCGCGGGCCGGGGGCGTGGAGGTGGAGCCCGGCGACGCGCACGGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90602477 84 -  91010382 GGGCTGCTGCTGGCGCTGGCGCTGGC-GCTGG------------------GCGGGCTGGCGCGGGCCGGGGGCGTGGAGGTGGAGCCCGGCGACGCGCACGGC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203887682 78 + 204313951 gggcTGCT------GCTGGCGCTGGT-GCTGG------------------GCGGGCTGTTGTGGACTGGGGGCGTCGAGGTGGAGCCCGGGGGCGCGCACGGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16041535 78 +  16417988 GGGCTGCT------GCTGGCGCTGGT-GCTGG------------------GCGGGTTGTTGCGGACCGGGAGCGTCGAGGTGGAGCCCGGGGGTGCGCACGGC
i saiBol1.JH378155         M 360 C 0
s cebCap1.NW_016108158v1      128879 78 +    298490 gggctgct------gctggcgctggt-gctgg------------------gcgggctgttgcGGACCGGGGGCGTCGAGGTGGAGCCCGGGGGCGCGCACGGC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25454518 78 -  25620257 -GGGCGCT------GCTGGCCTGCGTGGCCTG------------------GCGGGCTCTTGCGGACCGGGGGCGTCGAGGTGGAGCCCGGGGGCGCGCACGGC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1904834 84 -   2165740 GGGCTGCT------GCTGGCCCTGGT-GCTGGCATTG------------AGCGGGCTGCCGTGGGCGAGGGGCGTCGAGGAGGTGCCTGGTGGCACGCATGGA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11748732 96 +  42124431 GGActgca------gctggcgctgct-gctggtgccgctgctggtgctCGGCGTGCTGCCGAGGGCGCGGGCCTTCGAGGAGCAGCCTGGCAGCGCGCACGGG
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M
e panPan2.chr5             183089004 368 - 183735486 M

a score=1170895.000000
s hg38.chr5_KI270793v1_alt    104359 122 +    126136 GAGAGCGGGGGCTTCCAGGTGGTCACCTTCGAGTGGGCCCACGTGCAGGATCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCTTGGCCAAGATCGGTAAGTGGCCC-CGG-------GGTCTCCG
s panTro5.chr5             181370579 122 - 181907262 GAGAGCGGGGGCTTCCAGGTGGTCACCTTCAAGTGGGCCCACGTGCAGGATCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCTTGGCCAAGATCGGTAAGTGGCCC-CGG-------GGTCTCCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183089372 122 - 183735486 GAGAGCGGGGGCTTCCAGGTGGTCACCTTCAAGTGGGCCCACGTGCAGGATCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCTTGGCCAAGATCGGTAAGTGGCCC-CGG-------GGTCTCCG
i panPan2.chr5             M 368 C 0
s gorGor5.CYUI01015805v1      183036 121 +    698298 GAGAGC-GGGGCTTCCAGGTGGTCACCTTCGAGTGGGCCCACGTGCAGGATCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCTTGGCCAAGATCGGTAAGTGGCCC-CGG-------GGTCTCCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600849 122 - 121039945 gagagcgggggcTTCCAGGTGGTCACCTTCAAGTGGGCCCACGTGCAGGATCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCTTGGCCAAGATCGGTAAGTGGCCC-CGG-------GGTCTCCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179556325 122 - 180051392 GAGAGCGGGGGCTTCCAGGTGGTCACCTTCAAGTGGGCCCACGTGCAGGATCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCGTGGCCAAGATCGGTAGGTGGCCC-CGG-------GGTCTCCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289174 122 - 181584905 GAGAGCGGGGGCTTCCAGGTGGTCACCTTCAAGTGGGCCCACGTGCAGGATCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCGTGGCCAAGATCGGTAGGTGGCCC-CGG-------GGTCTCCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295323 122 -   1764207 GAGAGCGGGGGCTTCCAGGTGGTCACCTTCAAGTGGGCCCACGTGCAGGATCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCGTGGCCAAGATCGGTAGGTGGCCC-TGG-------GGTCTCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300366 122 -  16742782 GAGAGCGGGGGCTTCCAGGTGGTCACCTTCAAGTGGGCCCACGTGCAGGATCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCGTGGCCAAGATCGGTAGGTGGCCC-CGG-------GGTCTCCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90602561 122 -  91010382 GAGAGCGGGGGCTTCCAGGTGGTCACCTTCGAGTGGGCCCACGTGCAGGATCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCGTGGCCAAGATCGGTAGGTGGCCC-CGG-------GGTCTCCG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203887760 123 + 204313951 GAGAGCCAAGGCTTCCAGGTGGTCACCTTCGAGTGGGCGCACGTCCAGGACCCCTACGTCATCGCGCTCTGGGTCCTCGTGGCCAGCCTGGCTAAGATCGGTAAGTCGTTCGCAG-------GGTCTCCG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16041613 123 +  16417988 GAGAGCCAAGGCTTCCAGGTGGTCACCTTCGAGTGGGCGCACGTCCAGGACCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCCTGGCTAAGATCGGTAAGTGGTTCGCAG-------GGTCTCCG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      128957 123 +    298490 GAGAGCGAAGGCTTCCAGGTGGTCACCTTCGAGTGGGCGCACGTCCAGGACCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCCTGGCTAAGATCGGTAAGTGGTTCGCAG-------GGTCTCCG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25454596 123 -  25620257 GGGAGCCAAGGCTTCCAGGTGGTCACCTTCGAGTGGGCGCACGTCCAGGACCCCTACGTCATCGCGCTCTGGATCCTCGTGGCCAGCCTGGCTAAGATCGGTAAGTGGTTCGCAG-------GGTCTCCG
i aotNan1.NW_018503740v1   C 0 I 73
s otoGar3.GL873745           1904918 117 -   2165740 GCAAGTCAGGGCTTCCAGGTGGTCACTTTCGAATGGCACCACGTCCAGGACCCGTACATCATCGCTCTCTGGATCCTTGTAGCCAGCTTGGCCAAGATCGGTGAGTGCCCC-AAG------------CCA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11748828 129 +  42124431 GAGAGCCAGGGCTTCCAGGTGGTCACCTTCAAATGGCACCATGTCCAGGAACCGTACATCATCGCCCTGTGGATCCTCGTGGCCAGCTTGGCCAAGATCGGTAAGAAGCCT-CGGCTCGTTGGGGCTCCA
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M

a score=10500.000000
s hg38.chr5_KI270793v1_alt    104481 1 +    126136 G
s panTro5.chr5             181370701 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183089494 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      183157 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600971 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179556447 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289296 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295445 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300488 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90602683 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203887883 1 + 204313951 G
i calJac3.chr2             C 0 I 9
s saiBol1.JH378155          16041736 1 +  16417988 G
i saiBol1.JH378155         C 0 I 9
s cebCap1.NW_016108158v1      129080 1 +    298490 G
i cebCap1.NW_016108158v1   C 0 I 90
s otoGar3.GL873745           1905035 1 -   2165740 G
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11748957 1 +  42124431 G
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25454719 73 -  25620257 I
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M

a score=232567.000000
s hg38.chr5_KI270793v1_alt    104482  70 +    126136 --ATCTG--CCCGCGG----GGTGTGCGGCCGCCTCTGCTGGGCCTGG--GGGCT------------------------------------TCGTTGTGGCCGCGCG--CATC-----------AGGTC
s panTro5.chr5             181370702  70 - 181907262 --ATCTG--CCCGCGG----GGTATGCGGCCGCCTCTGCTGGGTCTGG--GGGCT------------------------------------TCGTTGTGGCCGCGCG--CATC-----------AGGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183089495  70 - 183735486 --ATCTG--CCCGCGG----GGTATGCGGCCGCCTCTGCTGGGTCTGG--GGGCT------------------------------------TCGTTGTGGCCGCGCG--CATC-----------AGGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      183158  69 +    698298 --ATCTG--CCCGCGG----GGGATGCGGCCGCCTCTGCTGGGTCT-G--GGGCT------------------------------------TCGTTGTGGCCGCGCG--CATC-----------AGGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120600972  70 - 121039945 --GTCTG--CCCGCGG----GGTATGCGGCCGCCTCTGCCGGGTCTGG--GGGCT------------------------------------TCGTTGTGGCCGCGCC--CATC-----------AGGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179556448  70 - 180051392 --GTCTG--CCCGCGG----GGTCTGCGGCCGCCTCTGCCGGGTCTGG--GGGCT------------------------------------TCGTTGTGGCCGCGCC--CATC-----------AGGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289297  70 - 181584905 --GTCTG--CCCGCGG----GGTCTGCGGCCGCCTCTGCCGGGTCTGG--GGGCT------------------------------------TCGTTGTGGCCGCGCC--CATC-----------AGGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295446  70 -   1764207 --GTCTG--CCCGCGG----GGTCTGCGGCCGCCTCTGCCGGGTCTGG--GGGCT------------------------------------TCGTTGTGGCCGCGCC--CATC-----------AGGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300489  70 -  16742782 --GTCTG--CCCGCGG----GGTCTGCGGCCGCCTCTGCCGGGTCTGG--GGGCT------------------------------------TCGTTGTGGCCGCGCC--CATC-----------AGGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90602684  70 -  91010382 --GTCTG--CCCGCGG----GGTCTGCGGCCGCCTCTGCGGGGTCTGG--GGGCT------------------------------------TCGTTGTGGCCGCGCC--CATC-----------AGGTC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203887893  78 + 204313951 --GCCTGCCCCCGCGG----GGTCTTGGGACCACCGACCTGGGTGCGG--CCGTCACC-------------CCTG----------------CCGCTG-CCCCGCCTC--TGCC-----------GGGTC
i calJac3.chr2             I 9 I 2
s saiBol1.JH378155          16041746  79 +  16417988 --GCCTGCGCCCGCGG----GGTCTCGGGACCACCGACCTGGGTGCGG--CCGTCACC-------------CCTG----------------CCCCTGTCTCCGCCTC--TGCC-----------GGGTC
i saiBol1.JH378155         I 9 I 2
s otoGar3.GL873745           1905036  36 -   2165740 ------------GTAG------------------TCAGCTGGACCTAGGCGAGCT------------------------------------CCCTTAGGGAC---------------------------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11748958 123 +  42124431 GTCCCAG--CCCGCGGCGACGTGCCCCGGCCGGCTCTG--GGGTCTGc--gcgcccccgcccgcgcccccgcctgcgccccGGGGCGCAGAGCCCTGCGTCCGCGTCGGCGTCCGCCCTGCCCGGGGTC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25454719  73 -  25620257 I
e cebCap1.NW_016108158v1      129081  90 +    298490 I
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M

a score=99838.000000
s hg38.chr5_KI270793v1_alt    104552 23 +    126136 GGAGCCG--------------------CGCGGCGGCCGCCCGG
s panTro5.chr5             181370772 23 - 181907262 GGAGCCG--------------------CGCGGCGGCCGCCCGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183089565 23 - 183735486 GGAGCCG--------------------CGCGGCGGCCGCCCGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      183227 23 +    698298 GGAGCCG--------------------CGCGGCGGCCACCCGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120601042 23 - 121039945 GGAGCCG--------------------CGCGGCGGGCGCCCGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179556518 23 - 180051392 GGAGCCG--------------------GGCGGCCGCGGCTCGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289367 23 - 181584905 GGAGCCG--------------------GGCGGCCGCGGCTCGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295516 23 -   1764207 GGAGCCG--------------------GGCGGCCGCGGCTCGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300559 23 -  16742782 GGAGCCG--------------------GGCGGCCGCGGCTCGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90602754 23 -  91010382 GGAGCCG--------------------GGCGGCCGCGGCTCGG
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203887973 23 + 204313951 GGGTCTT--------------------CGCTGTGGCCGCCCCG
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          16041827 23 +  16417988 GGGTCTT--------------------CGCTGTGGCCGCCCCG
i saiBol1.JH378155         I 2 C 0
s cebCap1.NW_016108158v1      129171 23 +    298490 GGGTCTT--------------------CGCTGTGGCTGCCCCG
i cebCap1.NW_016108158v1   I 90 C 0
s canFam3.chr34             11749081 43 +  42124431 TGCGCCGCTGCGCGCTCTAACCCGTCCCGCGGGAGCTGCCCGC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25454719 73 -  25620257 I
e otoGar3.GL873745           1905072  0 -   2165740 C
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M

a score=839293.000000
s hg38.chr5_KI270793v1_alt    104575 130 +    126136 ------------------------GAGAGTCCGGCTCTCGGGTCCAGCAGAGCGAGACTCGGGA-GCGACTCTGGCCGCGCT--AAGCCGCCCCTGCGGGTC-CCGA-GGTCTCCCC--------TCCCCGGC-------GGGGGCACAGCCTCGGA--------------GCCCCGGACTCCCGGCT
s panTro5.chr5             181370795 130 - 181907262 ------------------------GAGAGTCCGGCTCTCGGGTCCAGCAGAGCGAGACTCGGGA-GCGACTCTGGCCGCGCT--AAGCCGCCCCTGCGGGTC-CCGA-GGTCTCCCC--------TCCCCGGC-------GGGGGCACAGCCTCGGA--------------GCTCCCGACTCCCGGCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183089588 130 - 183735486 ------------------------GAGAGTCCGGCTCTCGGGTCCAGCAGAGCGAGACTCGGGA-GCGACTCTGGCCGCGCT--AAGCCGCCCCTGCGGGTC-CCGA-GGTCTCCCC--------TCCCCGGC-------GGGGGCACAGCCTCGGA--------------GCTCCCGACTCCCGGCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      183250 132 +    698298 ------------------------GAGAGTCCGGCTCTCGGGTCCAGCGGAGCGA------------GACTCTGGCCGCGCT--AAGCCGCCCCTGCGGGTC-CCGA-GGTCTCCCC--------TCCCCGGC--------GGGGCACAGCCTCGGAgctcccggctcccggctcccggctcccggct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120601065 122 - 121039945 ------------------------GAGAGTCCGGCTCTCGGGTCCAGCAGAGCGAGACTCGGCA-GCGACTCTGACCGCGCT--AAGCCGCCCCTGCGGGTC-CCGA-GGTCTCCCC--------T-CCCGGC-------GGGGGCACAGCCTCGGA---------------------GCTCCCGGCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179556541 131 - 180051392 ------------------------GAGAGTCTGGCTCTCCGGTCCAGCAGAGCGAGACTCGGGA-GCGACTCTGGCCGCGCT--AAGCCGCCCCTGCGGGTC-CCGAGGGTCTCCCC--------TACCCGGC-------GGGGGCACAGCCTCGGA--------------GCCCCTGGCTCGCGGCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289390 131 - 181584905 ------------------------GAGAGTCTGGCTCTCCGGTCCAGCAGAGCGAGACTCGGGA-GCGACTCTGGCCGCGCT--AAGCCGCCCCTGCGGGTC-CCGAGGGTCTCCCC--------TACCCGGC-------GGGGGCACAGCCTCGGA--------------GCCCCTGGCTCGCGGCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295539 131 -   1764207 ------------------------GAGAGTCTGGCTCTCGGGTCCAGCAGAGCGAGACTCGGGA-GCGACTCTGGCCGCGCT--AAGCCGCCCCTGCGGGTC-CCGAGGGTCTCCCC--------TACCCGGC-------GGGGGCACAGCCTCGGA--------------GCCCCTGGCTCGCGGCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300582 131 -  16742782 ------------------------GAGAGTCCGGCTCTCGGGTCCAGCAGAGCGAGACTCGGGA-GCGACTCTGGCCGCGCT--AAGCCGCCCCTGCGGGTC-CCGAGGGTCTCCCC--------TACCCGGC-------GGGGGCACAGCCTCGGA--------------GCCCCTGGCTCGCGGCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90602777 131 -  91010382 ------------------------GAGAGTCCGGCTCTCGGGTCCAGCAGAGCGAGACTCGGGA-GCGACTCTGGCCGCGCT--AAGCCGCCCCTGCGGGTC-CCGAGGGTCTCCCC--------TACCCGGC-------GGGGGCACAGCCTCGGA--------------GCCCCTGGCTCCCGGCT
i chlSab2.chr4             C 0 I 7
s calJac3.chr2             203887996 123 + 204313951 ------------------------GAAAGTCCGGCTCTTGGGTCCAGCAGAGCGGGACTCGGGC-GCGACTCTGGCCGCGCT--AAGCCG-CCCTGAGGGTCGCCGAGGGTCGCCCC--------ACCCCAGC-------GGGGGCACAGCCTCGGA--------------G--------TTCCGACT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16041850 122 +  16417988 ------------------------AAAAGTCCGGCTCTTGGGTCCAGCAGAGCGGGACTCGGGC-GCGACTCCGGCCGCGCT--AAGCCG-CCCTGAGGGTCGCCGAGGGTCGCCCC--------ACCCCAGC--------GGGGCACAGCCTCGGA--------------G--------TCCCGGCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      129194 123 +    298490 ------------------------GAAAGTCCGGCTCTTGGGTCCAGCAGAGCGGGACTCGGGC-GCGACTCTGGACGCGCT--AAGCGG-CCCTGAGGGTCGCCGAGGGTCGCCCC--------ACCCCAGC-------GGGGGCACAGCCTCGGA--------------G--------TCCCGGCT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25454792 123 -  25620257 ------------------------TAAAGTCCGGCTCTTGGATCCAGCAGAGCGGGACTCGGGC-GCGACTCTGGCCGCGCT--AAGCCG-CCCTGAGGGTCGCCGAGGGTCGCCAC--------ACCCCAGC-------GGGGGCACAGCCTCGGA--------------G--------TCCCCGCT
i aotNan1.NW_018503740v1   I 73 C 0
s otoGar3.GL873745           1905072 113 -   2165740 -------------------------AGAGTTGGGTACCCG-----------------------------CCTTCGCCTTGGT--CCGCAGTCGCTGCCAGTCTGCGGTGATCCTCCCGGTGGCGTCATCCGGCAGATTGGAGGAACGCAGCGCCTGA--------------A-----GCCTGTAGGCG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11749124 145 +  42124431 GCTCGGAGCGCCCCTGTGAGCCCCAAGGGCCAGGCCTTCGGGTCGGGCGGGGCGAGGCGCGGGCTGCGAGCCTGGCCGGGCCCGGAGCAG-CCGTGCGGGCCGCCG--GGTTCCCGA--------TCCCGGCC-------AGGAGC-------------------------GCGCCAGGCTCCCGGGT
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1      197518 870 -    438239 M
e colAng1.NW_012118799v1      228016 1135 -    514179 M

a score=744582.000000
s hg38.chr5_KI270793v1_alt    104705 109 +    126136 CCCGGGTCCCTG--TGGGGTCTCCGCCCCGCCTCCGCTCCGAGCCCCGCAGACTGCAG-------GCTGCT---CGCGCCCAGGGAGTCCCC-------GGGGCC----GGGTTTCCTTCGGGGTTCTCAGG
s panTro5.chr5             181370925 109 - 181907262 CCCGGGTCCCTG--TGGGGTCTCCGCCCCGCCTCCGCTCCGAGCCCCGCAGACTGCAG-------GCTGCT---CGCGCCCAGGGAGTCCCC-------GGGGCC----GGGTTTCCTTCGGGGTTCTCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183089718 109 - 183735486 CCCGGGTCCCTG--TGGGGTCTCCGCCCCGCCTCCGCTCCGAGCCCCGCAGACTGCAG-------GCTGCT---CGCGCCCAGGGAGTCCCC-------GGGGCC----GGGTTTCCTTCGGGGTTCTCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      183382 108 +    698298 cccgggtcccTG--TGGGGTCTCCGCCCCGCCTCCGCTCCGAGCCCCGCAGACTGCAG-------GCTGCT---CGCGCCCAGGGAGTCCCC-------GGGGCC----GGGTTTCCTTC-GGGTTCTCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120601187 109 - 121039945 CCCGGGTCCCTG--CGGGGTCTCCGCCCCGCCTCCGCTCCGAGCCCCGCAGACTGCAG-------GCTGCT---CGCGCCCGGGGAGTCCGC-------GGGGCC----GGGTTTCCTTCGGGGTTCTCAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179556672 109 - 180051392 CCCGGGTCCCTG--TGGGGTCTCCGTCCGGCCTCCGCTCCGAGCCCCGCAGACTGTAG-------GCTGCT---CGCGCCCGGGGAGTCCCT-------GGGGCC----GGGTTTCCTTGGGGGTACTCAAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289521 109 - 181584905 CCCGGGTCCCTG--TGGGGTCTCCGTCCGGCCTCCGCTCCGAGCCCCGCAGACTGTAG-------GCTGCT---CGCGCCCGGGGAGTCCCT-------GGGGCC----GGGTTTCCTTGGGGGTACTCAAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295670 109 -   1764207 CCCGGGTCCCTG--TGGGGTCTCCGTCCGGCCTCCGCTCCGAGCCCCGCAGACTGTAG-------GCTGCT---CGCGCCCGGGGAGTCCCT-------GGGGCC----GGGTTTCCTTGGGGGTACTCAAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300713 109 -  16742782 CCCGGGTCCCTG--TGGGGTCTCCGTCCGGCCTCCGCTCCGAGCCCCGCAGACCGTAG-------GCTGCT---CGCGCCCGGGGAGTCCCT-------GGGGCC----GGGTTTCCTCGGGGGTACTCAAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90602915 109 -  91010382 CCTGGGTCCCTG--TGGGGTCTCCGTCCGGCCTCCGCTCCGAGCCCCGCAGACTGTAG-------GCTGCT---CGCGCCCGGGGAGTCCCT-------GGGGCC----GGGTTTCCTTCGGGGTACTCAAT
i chlSab2.chr4             I 7 C 0
s manLeu1.NW_012110441v1      198405 109 -    438239 CCCGGGTCCCTG--TGGGGTCTCCGTCCGGCCTCCGCTCCGAGCCCCGCAGACCGTAG-------GCTGCT---CGCGCCCGGGGAGTCCCT-------GGGCCC----GGGTTTCCTTGGGGGTACTCAAT
i manLeu1.NW_012110441v1   M 870 C 0
s calJac3.chr2             203888119  93 + 204313951 -CCCGGTCTCTG--TGGGATCT-CCCCCGGCCTCAGCTC-------------CTGCAG-------GCTGCT---TGCG-CCAGAGAGTCCCC-------AGGGCC----AGGTTTCCTTCGGGGTTCTCGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16041972  93 +  16417988 -CCCGGTCCCTG--TGGGGTCTCCCCCCGGCCTCCGCTC-------------CTGCAG-------GCTGCC---CGCT-CCAGAGAGTCCCT-------GGGGCC----AGGTTTCCTTC-GGGTTCTCTGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      129317  93 +    298490 -CCCGGTCCCTG--TGGCGTCT-CCTCCGGCCTCCGCTC-------------CTGCAG-------GCTGCT---CGCG-CCAGAGAGTCCCG-------GGGGCC----AGGTTTCCTTCGGGGTTCTCGGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25454915  93 -  25620257 -CCCGGTCCCTG--TGGGGTCT-CCGCCGGCCTCCGCTC-------------CTGCAG-------GCTGCC---CGCG-CCAGAGAGTCCCC-------GGGGCC----AGGTTTCCTGCGGGGTTCTCGGG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1905185  78 -   2165740 -CCAGGAACTGAATTAGGGTCT----CCTGCTGCAGCCACCAGCTTTTCAGTT------------------------------GGGTTTGTT-------GGGGC-----------CTTTTGAAATACCCAG-
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11749269 120 +  42124431 TTCGCGTCCCCG-----------CCGCCCTCTGCCGCCTCCAGGCCTGCAGACCTCGGGGCCGCCGCTGCTCTGCGCGCCCCGGGCCCCTTTCCTGTCgggggctggtgggggctggtgggggctgCCCGG-
i canFam3.chr34            C 0 I 49
e colAng1.NW_012118799v1      228016 1135 -    514179 M

a score=322084.000000
s hg38.chr5_KI270793v1_alt    104814 42 +    126136 CTTTTTAGAGAAACGTCCT-------------TGGAGTGATGGCGTTTTTTCGTG
s panTro5.chr5             181371034 42 - 181907262 CTTTTTAGAGAAACGTCCT-------------TGGAGTGATGGCGTTTTTTCGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183089827 42 - 183735486 CTTTTTAGAGAAACGTCCT-------------TGGAGTGATGGCGTTTTTTCGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      183490 42 +    698298 CTTTTTAGAGAAACGTCCT-------------TGGAGTGATGGCGTTTTTTCGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120601296 42 - 121039945 CTTTTTAGACAAACGTCCT-------------TGGAGTGATGGCGTTTTTTCGTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179556781 42 - 180051392 CTTTTTAGAGAAACGTCCT-------------TGGAGTGATGGCGCTTTTTCGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289630 42 - 181584905 CTTTTTAGAGAAACGTCCT-------------TGGAGTGATGGCGCTTTTTCGTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295779 42 -   1764207 CTTTTTAGAGAAACGTCCT-------------TGGAGTGATGGCGCTTTTTCGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300822 42 -  16742782 CTTTTTAGAGAAACGTCCT-------------TGGAGTGATGGCGCTTTTCCGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90603024 42 -  91010382 CTTTTTAGAGAAACGTCCT-------------TGGAGTGATGGCGCTTTTTCGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      198514 42 -    438239 CTTTTTAGAGAAACGTCCT-------------CGGAGTGATGGCGCTTTTTCGTG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203888212 55 + 204313951 CTTTTTAAAGACGCGTTCTCGCCAGCAGGCACTGGAGTGATGATGATTTTTCGTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16042065 55 +  16417988 CTGTTTAAAGACGCGTCCTCGCCGGCAGGCACTGGAGTGATGATGATTTTTCGTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      129410 55 +    298490 CTTTTTAAAGACGCGTCCTCGCCGGCAGGCATTGGAGTGATGATGATTTTTCGTT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25455008 55 -  25620257 CTTTTTAAAGACGCGTCCTCGCCGGCAGGCACTGGAGTGACGATGATTTTTCGTT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1905263 43 -   2165740 -------AGGAAAGGCTTTTGCTGTCAGCCACTGGAGTGAGGA-----TCCTGTG
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11749389 49 +  42124431 I
e colAng1.NW_012118799v1      228016 1135 -    514179 M

a score=834109.000000
s hg38.chr5_KI270793v1_alt    104856 92 +    126136 AGTTACAAGGGCAGAAAAGAAAAGCGGTGCTACCCGC-ATGAAACCCAGCAGAATCCTCCCTACAGGCGCAGCGTTCCCATTGGCGGGCCTCC
s panTro5.chr5             181371076 92 - 181907262 AGTTACAAGGGCAGAAAAGAAAAGCGGTGCTACCCGC-ATGAAACCCAGCAGAATCCTCCCTACAGGCGCAGCGTTCCCATTGGCGGGCCTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183089869 92 - 183735486 AGTTACAAGGGCAGAAAAGAAAAGCGGTGCTACCCGC-ATGAAACCCAGCAGAATCCTCCCTACAGGCGCAGCGTTCCCATTGGCGGGCCTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      183532 92 +    698298 CGTTACAAGGGCAGAAAAGAAAAGCGGTGCTACCCGC-ATGAAACCCAGCAGAATCCTCCCTACAGGCGCAGCGTTCCCATTGGCGGGCCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120601338 90 - 121039945 CGTTACAAGGGCAGAAAAGAAAAGCGGTGCTACCCGC-ACG-AACCCAGCAGAATCCTCCCTATAGGCGCAGCGTTCCCATTGGC-GGCCTCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179556823 92 - 180051392 CGTTACAAGGGCAGAAAGGAAAAGCGGTGCCACCCGC-ATGAAACCCAGCAGAATCCTCCCTACCGGCGCAGCGTTCCCATTGGCGGGCCTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289672 92 - 181584905 CGTTACAAGGGCAGAAAGGAAAAGCGGTGCTACCCGC-ATGAAACCCAGCAGAATCCTCCCTACCGGCGCAGCGTTCCCATTGGCGGGCCTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295821 92 -   1764207 CGTTGCAAGGGCAGAAAGGAAAAGCGGTGCTACCCGC-ATGAAACCCAGCAGAATCCTCCCTACCGGCGCAGCGTTCCCATTGGCGGGCCTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300864 92 -  16742782 CGTTACAAGGGCAGAAAGGAAAAGCGGTGCTACCCGC-ATGAAACCCAGCAGAATCCTCCCTACCGGCGCAGCGTTCCCATTGGCGGGCCTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90603066 92 -  91010382 CGTTACAAGGGCAGAAGGGAAAAGCGGTGCTACCCGC-ATGAAACCCAGCAGAATCCTCCCTACCGGCGCAGCGTTCCCATTGGCGGGCCTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      198556 92 -    438239 CGTTACAAGGGCAGAAAGGAAAAGCGGTGCTACCCGC-ATGAAACCCAGCAGAATCCTCCCTACCGGCGCAGCGTTCCCATTGGCGGGCCTCC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203888267 86 + 204313951 CATT------ACAAAAAAGAAAATCAGCGCCACCCGA-ATGAAACCCAGTAGAATCCTCCTTAGAGGTGCAGCGTTCCCATTGGCGGTCTTCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16042120 92 +  16417988 CGTTACAAGGACAAAAAAGAAAAGCAGCCCCACCCGC-GTGAAACCCAGTAGAATCCTCCTTAGAGGTGCAGCGTTCCCATTAGCGGTCTTCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      129465 92 +    298490 CGTTGCAAGGACAAAAAAGAAAAGCAGCGCCACCCGC-ATGAAACCCAGTAGAATCCTCGTTAGAGGCGCAGCGTTCCCATTGGCGGTCTTCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25455063 92 -  25620257 CGTTACAAGGGCAAAAAAGAAGAGCAGCGCCACCCGC-ATGAAACCCAGCAGAGTCCTCGTTAGAGGCGCAGCGTTCCCATTCGCCGGCTTCC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1905306 83 -   2165740 TATCTCTGGAGCAGAAAATAAAAACTCGGCTGCTCAG-AGTAAACCCAGTAGAATCCTATCCACATGATCAATTTTCCTGTTGG---------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11749438 85 +  42124431 GGCCCCCAGTGCAGAAAG--ACAGCGGTGCCACTCGAGATTAAACCCAGTAAAATCCTATTTATAGGAGCAATTTTTCCATTGACGA------
i canFam3.chr34            I 49 C 0
e colAng1.NW_012118799v1      228016 1135 -    514179 M

a score=2608536.000000
s hg38.chr5_KI270793v1_alt    104948 249 +    126136 ttttttttttttttttttAGAAAATCCCGGTCGGTCAGATTTCTCTTCTTCTTAACCGGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCTGAGGAGCTCGTGGGGATCAAAGTTTC-ATGTGTTGGTCCA---CAG----GGTAGGGTCTCTCCAGGGGTGGC------AGGGAGGTGGTCACTCGTGTGGAGG-GGGGATTAGGGGGCCCGAGTGGGGCCAGGAGA
s panTro5.chr5             181371168 243 - 181907262 ------TTTTTTTTTTTTAGAAAATCCCGGTCGGTCAGATTTCTCTTCTTCTTAACTGGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCTGAGGAGCTCGTGGGGATCAAAGTTTC-ATGTGTTGGTCCA---CAG----GGGAGGGTCTCTCCAGGGGTGGC------AGGGAGGTGGTCACTCGTGTGGAGG-GGGGATTAGGGGGCCCGAGTGGGGCCAGGAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183089961 240 - 183735486 ---------TTTTTTTTTAGAAAATCCCGGTCGGTCAGATTTCTCTTCTTCTTAACTGGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCTGAGGAGCTCGTGGGGATCAAAGTTTC-ATGTGTTGGTCCA---CAG----GGGAGGGTCTCTCCAGGGGTGGC------AGGGAGGTGGTCACTCGTGTGGAGG-GGGGATTAGGGGGCCCGAGTGGGGCCAGGAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      183624 243 +    698298 -----TTTTTTTTTTTTTAGAAAATCCCGGTCGGTCAGATTTCTCTTCTTCTTAACTGGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCTGAGGAGCTCGTGGGGATCAAAGTTTC-ATGTGTTGGTCCA---CAG----GGGAGGGTCTCTCCAGGGGTGGC------AGGGAGGTGGTCACTCGTGTGGA-G-GGGGATTAGGGGGCCCGAGTGGGGCCAGGAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120601428 243 - 121039945 -----TTTTTTTTTTTTTAGAAAATCCCGGTCGGTCAGATTTCTCTTCTCCTTAACTGGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCTGAGGAGCTCGTGGGGATCAAAGTTTC-ATGTGTTGGTCTA---CAG----GGGAGGGTCTCTCCGGGGGTGGT------GGGGAGCTGGTCACTCGTGTGGA-G-GGGGATTAGGGGACCCGAGTGGGGCCAGGAGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179556915 247 - 180051392 --TTTTTTTTTTTTTTTTGGAAAATCCCGGTCGGTCAGATTTCTCTTCTCCTTAACTTGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCTGAGGAGCTCGTGGGGATCAAAGTTTC-ATGTGTTGGCCCA---CAG----GGGAGGGTCTCTCCAGGGGTGGC------GGAGAGGTGGTCACTTGTGTAGAGG-GGGGATTAGGGGACACGAGTGGGGCCAGGAGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181289764 245 - 181584905 ----TTTTTTTTTTTTTTGGAAAATCCCGGTCGGTCAGATTTCTCTTCTCCTTAACTTGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCTGAGGAGCTCGTGGGGATCAAAGTTTC-ATGTGTTGGCCCA---CAG----GGGAGGGTCTCTCCAGGGGTGGC------GGAGAGGTGGTCACTTGTGTAGAGG-GGGGATTAGGGGACACGAGTGGGGCCAGGAGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      295913 246 -   1764207 ---TTTTTTTTTTTTTTTGGAAAATCCCGGTCGGTCAGATTTCTCTTCTCCTTAACTTGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCTGAGGAGCTCGTGGGGATCAAAGTTTC-ATGTGTTGGCCCA---CAG----GGGAGGGTCTCTCCAGGGGTGGC------GGAGAGGTGGTCACTTGTGTAGAGG-GGGGATTAGGGGACACGAGTGGGGCCAGGAGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      300956 245 -  16742782 ---TTTTTTTTTTTTTTTGGAAAATCCCGGTCGGTCAGATTTCTCTTCTCCTTAACTTGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCTGAGGAGCTCGT-GGGATCAAAGTTTC-ATGTGTTGGCCCA---CAG----GGGAGGGTCTCTCCGGGGGTGGC------GGAGAGGTGGTCACTTGTGTAGAGG-GGGGATTAGGGGACCCGAGTGCGGCCAGGAGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90603158 241 -  91010382 --------TTTTTTTTTTGGAAAATCCCGGTCGGTCAGATTTCTCTTCTCCTTAACTTGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCTGAGGAGCTCGTGGGGATCAAAGTTTC-ATGTGTTGGCCCA---CAG----GGGAGGGTCTCTCCAGGGGTGGC------AGAGAGGTGGTCACTTGTGTAGAGG-GGAGATTAGGGGACCCGAGCGGGGCCAGGAGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      198648 245 -    438239 ---TTTTTTTTTTTTTTTGGAAAATCCCGGTCGGTCAGATTTCTCTTCTCCTTAACTTGC-GCCAATGAACCAGTAATGTGGGCACGGCAGGTAGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCCGAGGAACTCGT-GGGATCAAAGTTTC-ATGTGTTGGCCCA---CAA----GGGAGGGTCTCTCCGGGGGTGGC------GGAGAGGTGGTCACTTGTGTAGAGG-GGGGATTAGGGGACCCGAGTGCGGCCAGGAGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      229171 249 -    514179 ttttttttttttttttttGGAAAATCCCGGTCGGTCAGATTTCTCTTCTCCTTAACTTGC-GCCAATGAACCAGTAATGTGGCCACGAAAGGTGGCTCCT-GGCAAGGTGACAGGAAGGTCAGCCTCCTGAGGAGCTCGTGGGGATCAAAGTTTC-ATGTGTTGGACCA---CAG----GGGAGGGTCTCTCCAGGGGTGGC------AGAGAGGTGGTCACTTGTGTAGAGA-GGGGATTAGGGGACCCGAGTGGGGCCAGGAGA
i colAng1.NW_012118799v1   M 1135 C 0
s calJac3.chr2             203888353 236 + 204313951 ------------TTTTTTAGAAAATCCCGGTCGGTCAGATTTCTCTTCTTCTTAACTGGC-TCCAGTGAACCAGTACTGTGGGCTGGGCAGGTGGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCCGAGGA-CTCGTGGGGATCAAAGTTTC-ATGTGTTGGTCCA---CAG----GGCAGGGTCTCTCCAGGGGTGGC------AGGGAGGTGGTCACTCGTGGGGAGG-GGCGATTAGGGGACCCAAGTTGGGCCAAGAGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16042212 236 +  16417988 ------------TTTTTTAGAAAATCCCGGTCGGTCAGATTTGTCTTCTCCTTAACTGGC-TCCAGTGAACCAGTACTGTGGGCCGGGCAGGTGGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCCGAGGA-CTCGTGGGGATCAAAGTTTC-GTGTGTTGGTCCA---CAG----GGCAGCGTCTCTCCAGGGGTGGC------AGGGAGGTGGTCACTCGTGGGGAGG-GGCGATGAGGGGACCCAAGTTGGGCCAAGAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      129557 236 +    298490 ------------TTTTTTAGAAAATCCCGGTCGGTCAGATTTCTCTTCTCCTTAACTGGC-TCCAGTGAACCAGTACTGTGGGCCGGGCAGGTGGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCCGAGGA-CTCGTGGGGATCAAAGTTTC-ATGTGTTGGTCCA---CAG----GGCAGGGTATCTCCAGGAGTGGC------GGGGAGGTGGTCACTCGTGGGGAGG-GGCGATTAGGGGACCCAAGTTGGGCCAAGAGA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25455155 233 -  25620257 ------------TTTTTTAGAAAATCCCGGTCGGTCAGATTTCTCTT---CTTAACTGGC-TCCAGTGAACCAGTGCTGTGGGCCGGGCAGGTGGCTCCT-GGCAAGGTGACAGGAAGGTCAGCTTCCCGAGGA-CTCGTGGGGATCAAAGTTTC-ATGTGTTGGTCCA---CAG----GGCAGGGTCTCTCCAGGGGTGGC------AGGGAGGTGGTCACTCGTGGGGAGG-GGCGATTAGGGGACCCAAGCTGGGCCAAGAGA
i aotNan1.NW_018503740v1   C 0 I 14
s otoGar3.GL873745           1905389 222 -   2165740 -------TCTTCTCTTTTCAAAAATCCTGGCCTGTCAGATTTCTCTTCT-CTTAACTGGCTTCCAGTGAGTCAGTAAGGTGGGAATTGCAGGTGGCTCCTGGGCAAGGTGATAAGAAGGTCGGATTTCTTAAGAGTTTGAGAGGATCAAAGTCTC-ATGCAGTGGCCAGTGCCAGCATCAAGAGGGTCTTT---GAGATGGT------GGGGATGTGGACG-------GGAGT-GTAGCTT------CCTGAGT------------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11749523 234 +  42124431 -------TGTTTCTCTTTTAAAAGTCCTGGTCTGTCTGATTTCT------CTTAACTTGC-TTCAGTGAGCCAGCAAAGTGGGGACTGCAGGTAACTCCCGGGCAAGGTGATGGGAAGGTCAGCTTTCT-AACAGCTTCTGAGGTCCAAGGTTTCAACGTGTTGGTCCA---CCA----GG-AGGGGCTTCCTGGAGGTGGTGCACTGAGGATGGCCTGCACCACTGACTAGGTGGAGGCTGGGGGACC---------GCAAGGGA
i canFam3.chr34            C 0 C 0

a score=136563.000000
s hg38.chr5_KI270793v1_alt    105197 26 +    126136 AGCAAGATCAGAGCAGCAGGCGCCGC
s panTro5.chr5             181371411 26 - 181907262 AGCAAGATCAGAGCAGCAGGCGCCGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183090201 26 - 183735486 AGCAAGATCAGAGCAGCAGGCGCCGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      183867 18 +    698298 AGCAAGAT--------CAGGCGCCGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120601671 26 - 121039945 AGCGAGATCAGAGCAGCAGGCGCCGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179557162 26 - 180051392 AGCAAGATCAGAGCAGCAGGCGCCGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181290009 26 - 181584905 AGCAAGATCAGAGCAGCAGGCGCCGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      296159 26 -   1764207 AGCAAGATCAGAGCAGCAGGCGCCGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      301201 26 -  16742782 AGCAAGATCAGAGCAGCAAGCGCCGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90603399 26 -  91010382 AGCAAGATCAGAGCAGCAGGCGCCGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      198893 26 -    438239 AGCAAGATCAGAGCAGCAAGCGCCGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      229420 26 -    514179 AGCAAGATCAGAGCAGCAGGCGCCGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203888589 14 + 204313951 -----------AACAGCAGGTGCCA-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16042448 14 +  16417988 -----------AACAGCGGGTGCCA-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      129793 14 +    298490 -----------AACAGCGGGTGCCA-
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1905611 20 -   2165740 -GCAAGGCCAGGG---CATGTCCT--
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11749757  9 +  42124431 -----------------GGGGGCCTG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25455388 14 -  25620257 I

a score=2719213.000000
s hg38.chr5_KI270793v1_alt    105223 287 +    126136 GGCAGGTTTCCAGAGCAGCTTTGGACTGGGGCGAGA------------GGAGGTTTCGATGCTGGGGCCGAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAGGGACAGGCTCCGGGGAGAACAGCTGAGA-----GGACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGGCGCCTT--TTCCTTCAGTGACGCCTGCCGCCTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTTCAGGCCCCTTGTGTGTTTGCTT----TCTGTCTCATAAGGGCTCTTCTGAGCcctccc-------------------gcc
s panTro5.chr5             181371437 287 - 181907262 GGCAGGTTTCCAGAGCAGCTTTGGACTGGGGCGAGA------------GGAGGTTTCGATGCTGGGGCCGAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAGGGACAGGCTCCGGGGAGAACAGCTGAGA-----GGACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGCCGCCTT--TTCCTTCAGTGACGCCTGCCGCCTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTTCAGGCCCCTTGTGTGTTTGCTT----TCTGTCTCATAAGGGCTCTTCTGAGCcctctc-------------------gcc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183090227 287 - 183735486 GGCAGGTTTCCAGAGCAGCTTTGGACTGGGGCGAGA------------GGAGGTTTCGATGCTGGGGCCGAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAGGGACAGGCTCCGGGGAGAACAGCTGAGA-----GGACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGCCGCCTT--TTCCTTCAGTGACGCCTGCCGCCTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTTCAGGCCCCTTGTGTGTTTGCTT----TCTGTCTCATAAGGGCTCTTCTGAGCcctccc-------------------gcc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      183885 286 +    698298 GGCAGGTTTCCAGAGCAGCTTTGGACTGGGGCGAGA------------GGAGGTTTCGATGCTGGGGCCGAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAGGGACAGGCTCCGGGGAGAACAGCTGAGA-----GGACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGGCGCCTT--TTCCTTCAGTGACGCCTGCCGCCTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTTCAGG-CCCTTGTGTGTTTGCTT----TCTGTCTCATAAGGGCTCTTCTGAGCcctccc-------------------gcc
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120601697 286 - 121039945 GGCAGGTTTCCAGAGCAGCTTGGGACTGGGGCGAGA------------GGAGGTTTCGATGCTGGGGCCCAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAGGGACAGGCTCCGGGGAGAACAGCTGAGA-----GGACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGGCGCCTT--TTCCTCCAGTGCCGCCTGCCGCCTGCCCTATTTATGCCAGGGTCT-----------CCCTCCCCTTCAGGCCCCTTGTGTGTTTGCTT----TCTGTCTCATTAGCGCTCTTCTGAGCcctccc-------------------gcc
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179557188 318 - 180051392 CGCAGGTTTCCAGAGCGGCTTTGGACTGGGGCGGGGTGGGCAGGGGGCGGCGGTTTGGATGCTGGGGCCGAGGA----GGGGCGTCCACGCAG-------------GACAGG----GGAAGGACAGGCTTCGGGGAGAACAGCTGAGA-----GAACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGGTGCCTT--TTCCTTCAGTGACGCCTGCCGCCTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTCCAGGCCCCTTGAGTGTTTGCTT----TCTGTCTCGTAAGTGCTCTTCTGAGCCCTCCCGCGCCCTCCCTTCTCTGCAGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181290035 318 - 181584905 CGCAGGTTTCCAGAGCGGCTTTGGACTGGGGCGGGGTGGGCAGGGGGCGGCGGTTTGGATGCTGGGGCCGAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAAGGACAGGCTTCGGGGAGAACAGCTGAGA-----GAACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGGTGCCTT--TTCCTTCAGTGACGCCTGCCGCCTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTCCAGGCCCCTTGAGTGTTTGCTT----TCTGTCTCGTAAGTGCTCTTCTGAGCCCTCCCGCGCCCTCCCTTCTCTGCAGCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      296185 322 -   1764207 CGCAGGTTTCCAGAGCGGCTTTGGACTGGGGCGGGGTGGGCAGGGGGCGGCGGTTTGGATGCTGGGGCCGAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAAGGACAGGCTTCGGGGAGAACAGCTGAGA-----GAACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGGTGCCTT--TTCCTTCAGTGACGCCTGCCGCCTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTCCAGGCCCCTTGAGTGTTTGCTTTCTGTCTGTCTCGTAAGTGCTCTTCTGAGCCCTCCCGCGCCCTCCCTTCTCTGCAGCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      301227 318 -  16742782 CGCAGGTTTCCAGAGCGGCTTTGGACTGGGGCGGGGTGGGGAGGGGGCGGCGGTTTGGATGCTGGGGCGGAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAAGGACAGGCTTCGGGGAGAACAGCTGAGA-----GAACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGGTGCCTT--TTCCTTCAGTGACGCCTGCCGCCTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTTCAGGCCCCTTGAGTGTTTGCTT----TCTGTCTCGTAAGTGCTCTTCTGAGCCCTCCCGCGCCCTCCCTTCTCTGCAGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90603425 318 -  91010382 CGCAGGTTTCCAGAGCGGCTTTGGACTGGGGCGGGGTGGGGAGGGGGCGGCGGTTTGGATGCTGGGGCCAAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAAGGACAGGCTTCGGGGAGAACAGCTGAGA-----GAACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGGTGCCTT--TTCCTGCAGTGACGCCTGCCGCTTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTTCAGGCCCCTTGAGTGTTTGCTT----TCTGTCTCCTAAGTGCTCTTCTGAGCCCTCCCGCCCCCTCCCTTCTCTGCAGCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      198919 318 -    438239 CGCAGGTTTCCAGAGCGGCTTTGGACTGGGGCGGGGTGGGGAGGGGGCGGCGGTTTGGATGCTGGGGCCGAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAAGGACAGGCTTCGAGGAGAACAGCTGAGA-----GAACCTTGGCCTTGGTGGAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGGTGCCTT--TTCCTTCAGTGACGCCTGCCGCCTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTTCAGGCCCCTTGAGTGTTTGCTT----TCTGTCTCATAAGTGCTCTTCTGAGCCCTCCCGCGCCCTGCCTTCTCTGCAGCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      229446 318 -    514179 CGCAGGTTTCCAGAGCCGCTTTGGACTGGGGCGCGGTGGGGAGGGGGCGGCGGTTTCGATGCTGGGGCCGAGGA----GGGGCGCCCACGCAG-------------GACAGG----GGAGGGACAGGCTTGGGGGAGAACAGCTGAGA-----GAACCTTGGCCTTGGGGAAACCTGGTACGCCCAGCAGGCTTGATTGGAGAAGGTGCCTT--TTCCTTCAGTGACGCCTGCCACCTGCCCTATTTATGCCAGGGTCT----------CCCCTCCCCTTCAGGCCCCTTGAGTGTTTGCTT----TCTGTCTCCTAAGTGCTCTTCTGAGCGCTCCCGCCCCCTCCCTTCTCTGCAGCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203888603 284 + 204313951 AGCAGGTTTCCAGAGTGGTTTTGGACTGGGGCA---------------GGAAGTTTGGATGCTGGGGCCTAGGA----GGGGCACCCTGGGAG-------------GACAAG----GAAGGGACAGGCTTTCGGGAGAGCTGCTGAGA-----GGACCTTGGACTTGGTGGAACATGGTACACCGGGCAGGCTTGATTGCTGAAGGTGCCTT--TTTCTTCAGTGCCGCCTGCCACCTGCCCTATTTAGGCCAGGGTCT----------CCCCTCCCCTTCAGATCCCTTGCGTGTTTACTT----TCTGTCTAACGAATGCTCTTCTGAGCCCTCCT-------------------GCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16042462 281 +  16417988 GGCAGGTTTCCAGAGCGGTTTTGGACTGGGGCA---------------GGAGGTTTGGATGCTGGGGCCTAGGA----GGGGCACCCGCGGAG-------------GACAGG----GAAGGGACAGGGTTTGGGGAG-GCCGCAGAGA-----GGACCGTGAACTTGGTGGAACCTGGTCCTCCCGGCAGGC-TGATTGCCGAAGGCGCCTT--TCCCGTCAGTGCCGCCTGCCGCCCGCCCTGTTTAGGCCAGGGTCT----------CCCCTCCCCGTCAGGTCCC-TGCGTGTTTACTT----TCTGTCTCACGAATGCTCTTCTGAGCCCTCCG-------------------GCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      129807 277 +    298490 GGCAGGTTTCCAGAGCGGTTTTGGACTGGGGCA---------------GCAGATTTGGATGCTGGGGCCTAGGT----GGGGCACGCGCGGAG-------------GACAGG----GAAGGGACAGGCTTTGGGGAGAGCCGCTGAGA-----GGACCTTGGACTTGCTGGAACCTGGTACGCCCGGCAGGCTTGATTGCTGAAGGTGCCTT--TTTCTTCGGTGCCGCCT-------GCCCTATTTAGGCCAGGGTCC----------CCCCTCCCCTTCAGGTCCCTTGCGTGTTTACTT----TCTGTCTCATGAATGCTCTTCTGAGCCCTCCC-------------------GCC
i cebCap1.NW_016108158v1   C 0 I 131
s aotNan1.NW_018503740v1    25455402 277 -  25620257 GGCAGGTTTCCAGCGCGGCTTTGGACTGGGGCA---------------GGAGGTTCGGATGCTGGGGCCTAGGA----GGGGCACCCGCGGAG-------------GACAGG----GAAGGGACAGGCTTTGGGGAGAGCTGCC--GA-----GGACCTTGGACTTGGTGGAACCTGGTACGCCCGG-AGGCTTGATGGCCGAAGGCGCCTT--TTTCTCCAGTGCCGCCTG-CGCCTGCCC-GTTGAGGCCAGGGTCT-----------CCCTGCCCTTCGGGGCCCTCGCGCGTTTACCT----TCTGTCTCATGGATGCTC-CCCGAGCCCTCCC-------------------GCC
i aotNan1.NW_018503740v1   I 14 C 0
s otoGar3.GL873745           1905631 266 -   2165740 GGGAGGTTTCCAAAGTGATTTTGGGAGAGG------------------GGCAG----------GGCACCAAGGA----GGGGCCTCCTGGGGGTACTGATGTCCTTGGCAGGACCAGGAGGGACAGGCTTTGGGGAGAGTGGGTTAAA-----GGGC--TGGACTCCGTCCTACCTGGTGTATCTGGCAGAC-------------------------CTCCAAGAGCACCTGCTGTCTGTCCCAGTTGT-CCTGTGTCTGCCGATGAGCTCCTTCCCCTTCAAACCCTTC------TTTTCT----GTTGTCTCTTCAGCTCTCTTTCCATGCCTCCT-------------------GCC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11749766 270 +  42124431 AGGATACCCCCAGGGAAGGGGAGGGACTCGGCAAGGCGG---------AGGGGCCC---TCCTGGGGCCTTGGGCTCTGCTGTTTTCA-GCAG-------------GATA------GCAGGGTCATGCTCCGGGCAGCCTACTAGAGAACTGTGAGCCCGAGTTTTGG-GGTGCCTGGGACG-CTGGCAG---TGCCTGGTGA----GCCGTGCTCCCTTCAACACCACCTGCTCTGTGTCCTGCTTATGCTGA---------------CCGCCTCCCTGGAGGGCCCTCTGGGTTCTGCTT----TCTGGGTC-----------TCGAAGGCCCCCT-------------------GCA
i canFam3.chr34            C 0 C 0

a score=269100.000000
s hg38.chr5_KI270793v1_alt    105510  54 +    126136 tcctcccttctccgcagcctcctc-----------------------ctcGCCCTGGTGT------------------------------------------------------------------------------------------------CTTTCAGCT---------CCCCG--------------------CCG
s panTro5.chr5             181371724  51 - 181907262 tcctcccttctccgcagcctcctc-----------------------ctcGCCCTGGTGT------------------------------------------------------------------------------------------------CTTTCAGCT---------CC-----------------------CCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183090514  51 - 183735486 tcctcccttctccgcagcctcctc-----------------------ctcGCCCTGGTGT------------------------------------------------------------------------------------------------CTTTCAGCT---------CC-----------------------CCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      184171  53 +    698298 tcctcccttctccgcagcctcctc-----------------------ctcGCCCTGGTGT------------------------------------------------------------------------------------------------CTTTCAGCT---------CC-CG--------------------CCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120601983  50 - 121039945 tcctcccttctccgcagcctcctc-----------------------ctcGCCCTGGTGT------------------------------------------------------------------------------------------------C-TTCAGCT---------CC-----------------------CCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179557506  78 - 180051392 TCCTCCCTTCTCTGCAGCCTCCTCCGTTCTCTGCAGCCTCCTCCCTTCTCACCCCGGTGT------------------------------------------------------------------------------------------------CTTTCAGCT---------CC-CG------------------GCCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181290353  78 - 181584905 TCCTCCCTTCTCTGCAGCCTCCTCGCTTCTCTGCAGCCTCCTCCCTTCTCACCCCGGTGT------------------------------------------------------------------------------------------------CTTTCAGCT---------CC-CG------------------GCCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      296507  55 -   1764207 TCCTCCCTTCTCTGCAGCCTCCTC-----------------------CTCACCCCGGTGT------------------------------------------------------------------------------------------------CTTTCAGCT---------CC-CG------------------GCCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      301545  55 -  16742782 TCCTCCCTTCTCTGCAGCCTCCTC-----------------------CTCACCCCGGTGT------------------------------------------------------------------------------------------------CTTTCAGCT---------CC-CG------------------GCCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90603743  55 -  91010382 TCCTCCCTTCTCTGCAGCCTCCTC-----------------------CTCACCCCGGTTT------------------------------------------------------------------------------------------------CTTTCAGCT---------CC-CG------------------GCCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      199237  55 -    438239 TCCTCCCTTCGCTGCAGCCTCCTC-----------------------CTCACCCCGGTGT------------------------------------------------------------------------------------------------CTTTCAGCT---------CC-CG------------------GCCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      229764  55 -    514179 TCCTCCCTTCTCTGCAGCCTCCTC-----------------------CTCACCCAGGTGT------------------------------------------------------------------------------------------------CTTTCAGCT---------CC-CC------------------GCCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203888887 174 + 204313951 TCCTCGCTTCTCCAAGA---CCTC-----------------------CTTGCTCTGGTGTCCTTCAGCTCCCGGCCCCAGGctgcctgcttgcccggctcactctgtccctgctgcctcgggctgcctgctcgcccggctcactctgtccctgctgcctccggctgcctgctcgcc-cggctcactctgtccctgctgcct-
i calJac3.chr2             C 0 I 2
s saiBol1.JH378155          16042743  54 +  16417988 TCCTCGCTTCTCCGAGACCTCCTC-----------------------CTTGCTCTGGTGT------------------------------------------------------------------------------------------------CCTTCAGCT---------CC-CG------------------GCCC-
i saiBol1.JH378155         C 0 I 2
s aotNan1.NW_018503740v1    25455679  54 -  25620257 TCCTCGCTTCTCCGAGACCTCCTC-----------------------CTTGCTCTGGTGT------------------------------------------------------------------------------------------------CCTTCAGCT---------cc-cg------------------gccc-
i aotNan1.NW_018503740v1   C 0 I 2
s otoGar3.GL873745           1905897  51 -   2165740 ----CCTGCCTCTGTTGGCTCTGC-----------------------CTTCCTCCTTCAT------------------------------------------------------------------------------------------------CCTTCAGCA---------TC-TG------------------GCCCC
i otoGar3.GL873745         C 0 I 2
s canFam3.chr34             11750036  33 +  42124431 ------TCTCTCTGCAGG--TCTC-----------------------CTTGC-------T------------------------------------------------------------------------------------------------CACCTGGCC---------CC--------------------------
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      130084 131 +    298490 I

a score=560891.000000
s hg38.chr5_KI270793v1_alt    105564 66 +    126136 GGCTGCCTG---CTCTCCAGGCTCAGGCTGTCCT-CCCT-GGGCTTTCCACTGGGGGCTTGGGATGCTGGC
s panTro5.chr5             181371775 66 - 181907262 GGCTGCCTG---CTCTCCAGGCTCAGGCTGTCCT-CCCT-GGGCTTTCCACTGGGGGCTTGCGATGCTGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183090565 66 - 183735486 GGCTGCCTG---CTCTCCAGGCTCAGGCTGTCCT-CCCT-GGGCTTTCCGCTGGGGGCTTGCGATGCTGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      184224 66 +    698298 GGCTGCCTG---CTCTCCAGGCTCAGGCTGTCCT-CCCT-GGGCTTTCCACTGGGGGCTTGCGATGCTGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602033 69 - 121039945 GCCTGGCTGCCTCTCTCCAGGCTCAGGCTGTCCT-CCCT-GGGCTTTCCACTGGGGGCTTGCGATGCTGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179557584 66 - 180051392 GGCTGCCTG---CTCTCCGGGCTCACGCTGGCCT-CGCT-GTGCTTTCCACTGGGGGCTTGCGATGCTGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181290431 66 - 181584905 GGCTGCCTG---CTCTCCGGGCTCACGCTGGCCT-CGCT-GTGCTTTCCACTGGGGGCTTGCGATGCTGGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      296562 66 -   1764207 GGCTGCCTG---CTCTCCGGGCTCACGCTGGCCT-CGCT-GTGCTTTCTACTGGGGGCTTGCGATGCTGGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      301600 66 -  16742782 GGCTGCCTG---CTCTCCGGGCTCACGCTGGCCT-CGCT-GTGCTTTCCACTGGGGGCTTGCGATGCTGGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90603798 66 -  91010382 GGCTGCCTG---CTCTCCGGGCTCACGCTGGCCT-CGCT-GTGCTTTCCACTGGGGGCTTGCGATGGTGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      199292 66 -    438239 GGCTGCCTG---CTCTCCGGGCTCACGCTGGCCT-CGCT-GTGCTTTCCACTGGGGGCTTGCGATGCTGGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      229819 66 -    514179 GGCTGCCTG---CTCTCCCGGCTCACGCTGGCCT-TGCT-GTGCTTTCCACTGGGGGCTTGCGATGCTGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889063 62 + 204313951 ggctgcctg---ctcgcccggctcactgtct--C-CTCT-GGGC--TCCACTGGAGGCTTGGGATGCTGGC
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          16042799 63 +  16417988 GGCTGCCTG---CTCGCCCGGCTCACTCTGT--C-CCCTGGGGC--TCCGCTGCAGGCTTGGGATGCTGGC
i saiBol1.JH378155         I 2 C 0
s cebCap1.NW_016108158v1      130215 64 +    298490 GGCTGCCTG---CTCGCCTGGCTCACTCTGTACC-CTCT-GGGC--TCCACTGCGGGCTTGGGATGCTGGC
i cebCap1.NW_016108158v1   I 131 I 18
s aotNan1.NW_018503740v1    25455735 64 -  25620257 ggctgcccg---cccgcccgGCTCACTCTGTCCC-CTCT-GGGC--TCCACTGCGGGCTTGGGATGCTGGC
i aotNan1.NW_018503740v1   I 2 C 0
s otoGar3.GL873745           1905950 57 -   2165740 GGCTGGGT----CTCTTTGA---CAGTCTGTCCC-CTGTGGGGCTTTCCAGTTGGGGCTGGCGCT------
i otoGar3.GL873745         I 2 C 0
s canFam3.chr34             11750069 59 +  42124431 GAATGCCGG---GTGT-CATGCTCACTCTATCCCACACT-GGGCTTTCCA---GGGTTTTGCGAGAC----
i canFam3.chr34            C 0 C 0

a score=132251.000000
s hg38.chr5_KI270793v1_alt    105630 17 +    126136 CGGGGGGG--AGTCTCTGA
s panTro5.chr5             181371841 17 - 181907262 CGCGGGGG--AGTCTCTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183090631 17 - 183735486 CGCGGGGG--AGTCTCTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      184290 17 +    698298 CGCGGGGG--AATCTCTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602102 16 - 121039945 C-TGGGGG--AGTCTCTGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179557650 17 - 180051392 CGTGGGGG--AGTCTCTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181290497 17 - 181584905 CGTGGGGG--AGTCTCTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      296628 17 -   1764207 CGTGGGGG--AGTCTCTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      301666 17 -  16742782 CGTGGGGG--AGTCTCTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90603864 17 -  91010382 CGTGGGGG--AGTCTCTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      199358 17 -    438239 CGTGGGGG--AGTCTCTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      229885 17 -    514179 CGTGGGGG--AGTCTCTGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889125 17 + 204313951 AGTAGGGG--AGGCCCTGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16042862 17 +  16417988 AGCAGGGG--AGGCCCTGA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25455799 17 -  25620257 AGTAGGGG--AGGCCCTGA
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11750128 17 +  42124431 --TAGGAGTAAGACTCCAG
i canFam3.chr34            C 0 I 98
e otoGar3.GL873745           1906007  0 -   2165740 C
e cebCap1.NW_016108158v1      130279 18 +    298490 I

a score=23855.000000
s hg38.chr5_KI270793v1_alt    105647 3 +    126136 GGC
s panTro5.chr5             181371858 3 - 181907262 GGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183090648 3 - 183735486 GGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      184307 3 +    698298 GGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602118 3 - 121039945 GGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179557667 3 - 180051392 GGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181290514 3 - 181584905 GGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      296645 3 -   1764207 GGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      301683 3 -  16742782 GGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90603881 3 -  91010382 GGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      199375 3 -    438239 GGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      229902 3 -    514179 GGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889142 3 + 204313951 CGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16042879 3 +  16417988 TGC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25455816 3 -  25620257 CAC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1906007 2 -   2165740 -GC
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      130279 18 +    298490 I
e canFam3.chr34             11750145 98 +  42124431 I

a score=1474937.000000
s hg38.chr5_KI270793v1_alt    105650 156 +    126136 TGGCTGCCTCCTACAGTTGATTTCCTTGAGAAGGGCCCC----TGGGGCATCAGGGAGGTCCAGACTCAACCTGGG-CTCTGCGGCCGCCCAGTCCTAAAG--CTCACCCTGCTTTCCTCTGACGGGAGTGCCCCCCTGGTGTAAACTGAAAAGGTAAtttct
s panTro5.chr5             181371861 158 - 181907262 TGGCTGCCTCCTACAGTTGATTTCCTTGAGAAGGGCCCC----TGGGGCATCAGGGAGGTCCAGACTCAACCTGGG-CTCTGCGGCCGCCCAGTCCTAAAGCTCTCACCCTGCTTTCCTCTGACGGGAGTGCCCCCCTGGTGTAAACTGAAAAGGTAATTTCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183090651 158 - 183735486 TGGCTGCCTCCTACAGTTGATTTCCTTGAGAAGGGCCCC----TGGGGCATCAGGGAGGTCCAGACTCAACCTGGG-CTCTGCGGCCGCCCAGTCCTAAAGCTCTCACCCTGCTTTCCTCTGACGGGAGTGCCCCCCTGGTGTAAACTGAAAAGGTAATTTCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      184310 156 +    698298 TGGCTGCCTCCTACAGTTGATTTCCTTGAGAAGGGCCCC----TGGGGCATCAGGGAGGTCCAGACTCAACCTGGG-CTCTGCGGCCGCCCAGTCCTAAAG--CTCACCCTGCTTTCCTCTGACAGGAGTGCCCCCCTGGTGTAAACTGAAAAGGTAAtttct
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602121 156 - 121039945 TGGCTGCTTCCTACAGTTGACTTCCTTGAGAAGGGCCCC----TGGGGCATCAGGGAGGTCCAGCCTCAACCTGGG-CTCTGCGGCCACCCAGTCCTAAAG--CTCACCCTGCTTTCCTCTGATGGGAGTGCCCCCCTGGTGTAAACTGAATAGGCAATTTCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179557670 156 - 180051392 TGGCTGCCTCCTACAGGTGATTTCCTTGAGAAGGTCCCC----TGGGGCATCAGGGAGGTCCAGCCTCAACCTGGG-CTCTGCGGTCGCCCAGTCCTAAAG--CTCACCCTGCTTTCCTCTGACGGGCGTGTCCCGCTGGTGTAAACTGAATAGGTAAtttct
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181290517 156 - 181584905 TGGCTGCCTCCTACAGGTGATTTCCTTGAGAAGGTCCCC----TGGGGCATCAGGGAGGTCCAGCCTCAACCTGGG-CTCTGCGGTCGCCCAGTCCTAAAG--CTCACCCTGCTTTCCTCTGACGGGCGTGTCCCGCTGGTGTAAACTGAATAGGTAAtttct
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      296648 151 -   1764207 TGGCTGCCTCCTACAGGTGATTTCCTTGAGAAGGTCCCC----TGGGGCATCAGGGAGGTCCAGCCTCAACCTGGG-CTCTGCGGTC-----ATCCTAAAG--CTCACCCTGCTTTCCTCTGACGGGCGTGTCCCGCTGGTGTAAACTGAATAGGTAAtttct
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      301686 156 -  16742782 TGGCTGCCTCCTACAGGTGATTTCCTTGAGAAGGTCCCC----TGGGGCATCAGGGAGGTCCAGCCTCAACCTGGG-CTCTGCAGTTGCCCAGTCCTAAAG--CTCACCCTGCTTTCCTCTGACGGGCGTGTCCCGCTGGTGTAAACTGAATAGGTAAtttct
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90603884 156 -  91010382 TGTCTGCCTCCTACAGGTGATTTCCTTGAGAAGGTCCCC----TGGGGCATCAGGGAGGTCCAGCCTCAGCCTGGG-CTCTGCGGATGCCCAGTCCTAAAG--CTCACCCTGCTTTCCTCTGACGGGCGTGTCCCGCTGGTGTAAACTGAATAGGTAAtttct
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      199378 156 -    438239 TGGCTGCCTCCTACAGGTGATTTCCTTGAGGAAGTCCCC----TGGGGCATCAGGGAGGTCCAGCCTCAACCTGGG-CTCTGCGGTCGCCCAGTCCTAAAG--CTCACCCTGCTTTCCTCTGACGGGCGTGTCCCGCTGGTGTAAACTGAGTAGGTAAtttct
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      229905 156 -    514179 TGGCTGCCTCCTACAGGTGACTTCCTTGAGAAGGTCCCC----TGGGGCATCAGGGAGGTCCAGCCTCAACCTGGG-CTCTGCAGACGCCCAGTCCTAAAG--CTCACCCTGCTTTCCTCTGTCGGGCGTGTCCCGCTGGTGTAAACTGAATAGGTAAtttct
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889145 157 + 204313951 TGGCTGCTTCCTACGGGTCATTTCCTTGAGAAGGGCCTC----TGGGGCATCAGGGAGGTCCAACCTCAATCTGGGTCTCTGAGGATGCCCAGTCCTAAAG--CTCACCCTGCTTTCCTCTGACGGGAGCGCCCCCATGGTGTAAAGTGAATATGAAATTTAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16042882 157 +  16417988 CGGCGGCTTCCCGCGGGTCATTTCCTTGAGAAGCGCCCC----TGGGGCATCAGGGAGGTCCAACCGCAGTCTGGGTCTCTGAGGATGCCCGGTCCTAAAG--CTCATCCTGCCTTCCTCTGACGGGAGCGACCCCCTGGTGTAAAGTGAATATGAAATTTCT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      130297 161 +    298490 TGGCTGCTTCCTACGGGTCATTTCCTTGAGAAGGGCCCCTGGGTGGGGCATCAGGGAGGTCCAACCTCAATCTGGGTCTCTGAGGATGCCCGGTCCTAAAG--CTCACCCCGCTTTCCTCTGACGGGAGCGCCCCCCTGGTGTAAAGTGAATGTGAGATTTCT
i cebCap1.NW_016108158v1   I 18 C 0
s aotNan1.NW_018503740v1    25455819 153 -  25620257 TGGCTGCTTCCTGCGGGTCATTTCCTTGAGAAGGGCCCC----TGGGGCCTCAGGGAGGT----CCTCAATCTGGGTCTCTGAGGATGCGCGGTCCTAAAG--CCCACCCTGCTTTCCTCTGACGGGAGCGCCCCCCTCGTGTAAAGTGAATATGAAATTTCT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1906009 100 -   2165740 TGGCTGCTTCCTAAA----------------------------CGG----TCAGGGAGATCC---------CAGAA-CTC----------CTGTCCTCCAG--CTCAG-TGGCTCCTCTCTGGCAGG---GTTCC-----TGTGGAGTGAATATGCAATTTCT
i otoGar3.GL873745         C 0 I 42
e canFam3.chr34             11750145  98 +  42124431 I

a score=431029.000000
s hg38.chr5_KI270793v1_alt    105806  70 +    126136 ttttttttctt-----tt-------------------tttttttttttt--------------------------------------------gagatagaattttgctcttgtt--------gcccaggctggagtgcaatgacg
s panTro5.chr5             181372019  80 - 181907262 TTttttttctt-----ttttctttt---------ttctttttttttttt--------------------------------------------gagatagagttttgctcttgtt--------gcccaggctggagtacaatgacg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183090809  77 - 183735486 TTtttttttct-----ttttctttt------------tttttttttttt--------------------------------------------gagatagagttttgctcttgtt--------gcccaggctggagtacaatgacg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      184466  87 +    698298 tttttttcttt-----tttcttttcttttctt--ttctttttttttttt--------------------------------------------gagatagagttttgctcttgtt--------gcccaggctggagtgcaatgacg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602277  89 - 121039945 TTTTTTTTCTT-----TTTCtttttctttctttcttttttttttttttt--------------------------------------------gaaatagagttttgctcttgtt--------gcccaggctggagtgcaatgacg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179557826  64 - 180051392 tttc-tttctt-----ttctttttt--------------------------------------------------------------------gagacggggtttcattcttgtt--------gcccaggctggagtgcaatgacg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181290673  64 - 181584905 tttc-tttctt-----ttctttttt--------------------------------------------------------------------gagacggggtttcattcttgtt--------gcccaggctggagtgcaatgacg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      296799  64 -   1764207 tttc-tttctt-----ttctttttt--------------------------------------------------------------------gagacggggtttcattcttgtt--------gcccaggctggagtgcaatgaca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      301842  65 -  16742782 tttcttttctt-----ttctttttt--------------------------------------------------------------------gagacggggtttcattcttgtt--------gcccaggctggagtgcaatgacg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90604040 129 -  91010382 tttcttttctt-----ttcttttcttttct----ttctttcttttcttttctttctttctttcttttttttttttttttttttnnnnnnnnnngagacggggtttcgttcttgtt--------gcccaggctggagtgcaatgacg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      199534  55 -    438239 tttctttttt-----------------------------------------------------------------------------------gagacggggtttcattcttgtt--------gcccaggctggagtgcaatgacg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      230061  84 -    514179 tttcttttctt-----tctttcttttcttt----tcttttctttttttt--------------------------------------------gagac-gggtttcgttcttgtt--------gcccaggctggagtgcaatgacg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889302  93 + 204313951 TTTCTTTCGTtttttctttctttct---------tttttttttttttta--------------------------------------------aagacagagttttgctcttgttctcttgtcacccaggctggagtgcaatggct
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16043039  83 +  16417988 tttctt----------tttttcttt---------tttttttttttttta--------------------------------------------aagacagagttttgctcttgttctcttgtcgcccaggctggagtgcaatggcg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      130458  88 +    298490 TTTCTttcctt-----ttttctttc---------tttttttttttttta--------------------------------------------aagacagagttttgctctccctctcttgtcgcccaggctggagtgcaatggcg
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25455972  84 -  25620257 Tttcctt---------tttttcttt---------ctttcttttttttta--------------------------------------------gagacagagttttgctcttgttctcttgtcgcccaggctggagtgcaatggca
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1906109  42 -   2165740 I
e canFam3.chr34             11750145  98 +  42124431 I

a score=285740.000000
s hg38.chr5_KI270793v1_alt    105876 26 +    126136 cgatctcggctcactgcaacctccac
s panTro5.chr5             181372099 26 - 181907262 cgatctcggctcactgcaacctccac
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183090886 26 - 183735486 cgatctcggctcactgcaacctccac
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      184553 26 +    698298 cgatctccgctcactgcaacctccac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602366 26 - 121039945 cgatctcggctcactgcaacctccac
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179557890 26 - 180051392 cgatctcggctcactgcagcctccac
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181290737 26 - 181584905 cgatctcggctcactgcagcctccac
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      296863 26 -   1764207 cgatctcggctcactgcagcctccac
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      301907 26 -  16742782 cgatctcggctcactgcagcctccac
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90604169 26 -  91010382 cgatctcggctcactgcagcctccac
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      199589 26 -    438239 cgatctcggctcactgcagcctccac
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      230145 26 -    514179 cgatctcggctcactgcaacctccac
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889395 26 + 204313951 cgatctcggctcaccgcaacctccac
i calJac3.chr2             C 0 I 19
s saiBol1.JH378155          16043122 26 +  16417988 ccatctcggctcacggcagcctccac
i saiBol1.JH378155         C 0 I 23
s cebCap1.NW_016108158v1      130546 26 +    298490 cgatctcggctcaccgcaacctccac
i cebCap1.NW_016108158v1   C 0 I 19
s aotNan1.NW_018503740v1    25456056 26 -  25620257 cgatctcggctcaccacaacctccac
i aotNan1.NW_018503740v1   C 0 I 659
s canFam3.chr34             11750243 25 +  42124431 CAACCTGGGCTTTCC-CAACACTCAC
i canFam3.chr34            I 98 C 0
e otoGar3.GL873745           1906109 42 -   2165740 I

a score=1986040.000000
s hg38.chr5_KI270793v1_alt    105902 250 +    126136 atcctgcctcagcctcccgagtagctgggattacaggcatgagccaccacgcccagctaa-tttgtatttttagtacag-----acagggtttctcca-tgttggtcaggctggtcttgaactccaga-cctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggccG-TGA-----ATATCTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTTAGCCCA-GTGTACAGAG
s panTro5.chr5             181372125 250 - 181907262 atcctgcctcagcctcccgagtagctgggattacaggcatgagccaccacgcccagctaa-tttgtatttttagtacag-----acagggtttctcca-tgttggtcaggctggtcttgaactccaga-cctcaggtgatgcacccacctcggcctcccaaagtgctgggatgacaggcgtgagccactgcgcccggccG-TGA-----ATATGTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTTAGCCCA-GTGTACAGAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183090912 250 - 183735486 atcctgcctcagcctcccgagtagctgggattacaggcatgagccaccacgcccagctaa-tttgtatttttagtacag-----acagggtttctcca-tgttggtcaggctggtcttgaactccaga-cctcaggtgatgcacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccactgcgcccggccG-TGA-----ATATGTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTTAGCCCA-GTGTACAGAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      184579 250 +    698298 atcctgcttcagcctcccgagtagctgggattacaggcatgagccaccatgcccagctaa-tttgtatttttagtacag-----acagggtttctcca-tgttggtcacgctggtcttgaactccaga-cctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggccG-TGA-----ATACGTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTTAGCCCA-GTGTACAGAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602392 251 - 121039945 ctcctgcctcagcttcccgagtagctgggattacaggcatgagccaccacgcccagctaattttgtatttttagtagag-----acggggtttctcca-tgttggtgaggctggtcttgaactccaga-cttcaggtgatccacccacctcagcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggccG-TGA-----ATATGTAATTTCTGTACAAGCTGGGGCCTCTCCCGGTTTAGCCCA-GTGTACAGAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179557916 243 - 180051392 ctcctgccacagcctct-------ctgggattacaggcatgtgccaccaagcccagctaa-tttgtatttttagtagag-----acagggtttctcca-tgttggtcaggctggtcttgaactccaga-cctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcctggtcC-TGA-----ATATGTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTCAGCCCT-GTGTACAGAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181290763 243 - 181584905 ctcctgccacagcctct-------ctgggattacaggcatgtgccaccaagcccggctaa-tttgtatttttagtagag-----acagggtttctcca-tgttggtcaggctggtcttgaactccaga-cctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcctggtcC-TGA-----ATATGTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTCAGCCCC-GTGTACAGAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      296889 243 -   1764207 ctcctgccacagcctct-------ctgggattacaggcatgtgccaccaagcccggctaa-tttgtatttttagtagag-----acagggtttctcca-tgttggtcaggctggtcttgaactccaga-cctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcctggtcC-TGA-----ATATGTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTCAGCCCC-GTGTACAGAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      301933 243 -  16742782 ctcctgccacagcctct-------ctgggattacaggcgcctgccactaagcccggctaa-tttgtatttttagtagag-----acagggtttctcca-tgttggtcaggctggtcttgaactccaga-cctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggtcC-TGA-----ATATGTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTCAGCCCC-GTGTACAGAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90604195 243 -  91010382 ctcctgcctcagcctct-------ctgggattacaggcgcctgccaccaaggccggctaa-tttgtatttttagtagag-----acagggtttctcca-tgttggtcaggctggtcttgaactccaga-cctcaggtgatccacccgcctcggcctcccaaagtgctgggatgacaggcgtgatccaccgcgcccggtcC-TGA-----ATATGTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTCAGCCCC-GTGTACAGAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      199615 243 -    438239 ctcctgccacagcctct-------ctgggattacaggcgcctgccaccaagcgcggctaa-tttgtatttttagtagag-----acagggtttctcca-tgttggtcaggctggtcttgaactccaga-cctcaggtgatccacccacctcggcctcccaaagtgctgggatgacaggcctgagccaccgcgcccggtcC-TGA-----ATATGTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTCAGCCCC-GTGTACAGAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      230171 244 -    514179 ctcctgcctcagcctct-------ctgggattacaggcacctgccaccatgcccagctaa-tttgtatttttagtagag-----acagggtttctccattattggtcaggctggtcttgaactccaga-cctcaggtgatccacccacctcggcctcccaaagtgctgggatgacaggcgtgagccaccgcgcccggtcC-TGA-----ATATGTAATTTCTGTACAAGCTGGGGCCTCTCCCAGTTCAGCCCC-GTGTACAGAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889440 252 + 204313951 cttctgtctcagcctcccgagtagctggaattacaggcatgcaccaccacacccagctaattttgtgtttatagtagag-----acggggtttctcca-ttttggtccgggtggtcttgaactcctgaccctcaggtgacccgcccgcctctgcttcccaaattgctgggattacaggtgtgagcccccactcccggccG-TGA-----ATATGTAATTTCTGTGCAAGCTGGGGCCTCTCCCAGTTCTGCCCA-GTGTTTGGAG
i calJac3.chr2             I 19 C 0
s saiBol1.JH378155          16043171 252 +  16417988 ctcctgtctcagcctccgaagtagctggaattacaggcatgcaccaccacacccagctaactttgtatttttagtagag-----atgggg-ttctcca-tgtgggtctgggtggtcttgaactcctgaccctcaggtgaccggcccgcctctgcctcccaaattgctgggattacaggtgtgagccaccactcccggccGTTGA-----GTATGTAATTTCTGTGCAAGCTGGGGCCTCTCCCAGGTGTGCCCA-GTGTTTGGAG
i saiBol1.JH378155         I 23 C 0
s cebCap1.NW_016108158v1      130591 234 +    298490 ctcctgtctcagcctcccgactagctggaattacaagcatctaccaccacacccagctaattttgtatttttagtagag-----acagtgtttctcca-tgttggtctgggtggtcttgaactcctgaccctcaggtgacccgcccgcctctgcctcccaaattgctgggattacaggtgtgagccac------------------------tgTAGTTTCTGTGCAAGCTGGGGCCTCTCCCAGTTCTGCCCG-GTGTTTGGAG
i cebCap1.NW_016108158v1   I 19 C 0
s canFam3.chr34             11750268 204 +  42124431 --ATTGCC-CACCTCCC-------CCAGGA--ACAGCCAGCTGTC------CTCTGCCGC-CCGCTGTCTGCTGTGCAGGCACCATAGGGATGCTATG-TGCAGGGTGAGGGGGCCGTGAC--------ACTCTGGGGTTCCAACC-------------------CTGGGATG------------CGGAGCACCCTGGTG-TAAAGCAGATATGTGCTTTCTTGGCAAGCT-GGGCTTCTCCTAGTACAGCCCCGGCGTCCAGAC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25456082 659 -  25620257 I
e otoGar3.GL873745           1906109  42 -   2165740 I

a score=1844196.000000
s hg38.chr5_KI270793v1_alt    106152 234 +    126136 TCAGAATCTGGCATCTGAAGGTCCAATGACAGCCGCCAGGCACCAGCCAGCCCCGCCTGGGAGCCGGCAGATAAGGCACACTGA------------CCAGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACA-GGGAAAAG-------CCTTCAGGTCTCCCAAACACTTGGACTGGTTCTGGGAAGACGTCCTTGAGGGC----GGGGAGGCTGCCGGCT-CCAGCAG--CAACTCCCCGGGGCA----------------------------------GGGCGGT------------------------------CC-------TTTAC
s panTro5.chr5             181372375 234 - 181907262 TCAGAATCTGGCATCTGGAGGTCCAATGACAGCCGCCAGGCACCAGCCAGCCCCGCCTGGGAGCCCGCAGATAAGGCACACTGA------------CCAGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACA-GGGAAAAG-------CCTTCAGGTCTCCCAAACACTCGGACTGGTTCTGGGAAGACGTCCTTGAGGGC----GGGGAGGCTGCTGGCT-CCAGCAG--CAACTCCCCGGGGCA----------------------------------GGGCGGT------------------------------CC-------TTTAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183091162 234 - 183735486 TCAGAATCTGGCATCTGAAGGTCCAATGACAGCCGCCAGGCACCAGCCAGCCCCGCCTGGGAGCCCGCAGATAAGGCACACTGA------------CCAGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACA-GGGAAAAG-------CCTTCAGGTCTCCCAAACACTTGGACTGGTTCTGGGAAGACGTCCTTGAGGGC----GGGGAGGCTGCCGGCT-CCAGCAG--CAACTCCCCGGGGCA----------------------------------GGGCGGT------------------------------CC-------TTTAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      184829 232 +    698298 TCAGAATCTGGCATCTGAAGGTCCAATGACAGCCGCCAGGCACCAGCCAGCCCCGCCTGGGAGCCCGCAGATAAGGCACACTGA------------CCAGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACA-GGGAAAAG-------CCTTCAGGTCTCCCAAACACTTGGACTGGTTCT-GGAAGACGTCCTTGAGGGC-----GGGAGGCTGCCGGCT-CCAGCAG--CAACTCCCCGGGGCA----------------------------------GGGCGGT------------------------------CC-------TTTAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602643 235 - 121039945 TCAGAATCTGGCATCTGAAGGTCCAATGACGGCCGCCAGGCACCAGCCAGCCCCGCCTGGGAGCCCACAGGTAGGGCACACTGA------------CCAGGGCTTTGCCTGGTGTCAGAGTTTGTTATTCACC-AGGAAAAG-------CCTTCAGGTCTCCCAAACACTTGGACTGGTTCTGGGAAGACGTCCTTGAGGGC----GGGGAGGCTGCCGGCTCCCAGCAG--CACCTCCCGGGGGCA----------------------------------GGGCGGT------------------------------CC-------TTTAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179558159 261 - 180051392 TCAGAATCTGGCATCTGAAGGTCCGAAGACAGCCACCAGGCACCAGCCAGCCCCGCCTGGGAGCCCGCAGGGAGGGCCCGCTGA------------CCGGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACC-AGGAAAAG-------CCTTCGGGTCTCCCAGACACTTGGACTGGTTCTGGAAAGACGTCCTTGAGGGC----AAGGA-GCTGCCGGCT-CCAGCAG--CAAGTCCCGGGGGCA----------------------------------GGGCGGTCCCAGAATGCATCTCCTG--GGGAGCTGGCCC-------TTTAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181291006 261 - 181584905 TCAGAATCTGGCATCTGAAGGTCCGAAGACAGCCACCAGGCACCAACCAGCCCCGCCTGGGAGCCCGCAGGGAGGGCACACTGA------------CCGGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACC-AGGAAAAG-------CCTTCGGGTCTCCCAGACACTTGGACTGGTTCTGGAAAGACGTCCTTGAGGGC----AAGGA-GCTGCCGGCT-CCAGCAG--CAAGTCCCGGGGGCA----------------------------------GGGCGGTCCCAGAATGCATCTCCTG--GGGAGCTGGCCC-------TTTAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      297132 261 -   1764207 TCAGAATCTGGCATCTGAAGGTCCGAAGACAGCCACCAGGCACCAGCCAGCCCCGCCTGGGAGCCCGCAGGGAGGGCACACTGA------------CCGGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACC-AGGAAAAG-------CCTTCGGGTCTCCCAGACACTTGGACTGGTTCTGGAAAGACGTCCTTGAGGGC----AAGGA-GCTGCCGGCT-CCAGCAG--CAAGTCCCGAGGGCA----------------------------------GGGCGGTCCCAGAATGCATCTCCTG--GGGAGCTGGCCC-------TTTAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      302176 261 -  16742782 TCAGAATCTGGCATCTGAAGGTCCGAAGACAGCCACCAGGCACCAGCCAGCCCCGCCTGGGAGCCCGCAGGGAGGGCACACTGA------------CCGGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACC-AGGAAAAG-------CCTTCGGGTCTCCCAGACACTTGGACTGATTCTGGAAAGACGTCCTTGAGGGC----GAGGA-GCTGCCGGCT-CCAGCAG--CAAGTCCCGGGGGCA----------------------------------GGGCGGTCCCAGAATGCATCTCCTG--GGGAGCTGGCCC-------TTTAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90604438 262 -  91010382 TCAGAATCTGGCATCGGAAGGTCCAAAGACAGCCACCAGGCACCAGCCAGCCCCATCTGGGAGCCCGCAGGGAGGGCACACTGA------------CCGGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACC-AGGAAAAG-------CCTTCAGGTCTCCCAGACACTTGGACTGGTTCTGGAAAGATGTCCTTGAGGGC----AAGGAGGTTGCCGGCT-CCAGCAG--CAAGTCCCTGGGGCA----------------------------------GGGCGGTCCCAGAATGCATCTCCTG--GGGAGCTGGCCC-------TTTAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      199858 260 -    438239 TCAGAATCTGGCATCTGAAGGTCCGAAGACAGCCACC-GGCACCAGCCAGCCCCGCCTGGGAGCCCGCAGGGAGGGCACACTGA------------CCGGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACC-AGGAAAAG-------CCTTCAGGTCTCCCAGACACTTGGACTGGTTCTGGAAAGACGTCCTTGAGGGC----GAGGA-GCTGCCGGCT-CCAGCAG--CAAGTCCCGGGGGCA----------------------------------GGGCGGTCCCAGAATGCATCTCCTG--GGGAGCTGGCCC-------TTTAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      230415 262 -    514179 TCAGAATCTGGCATCTGAAGGTCCAAAGACAGCCACCAGGCACCAGCCAGCCCCGCCTGGGAGCCCGCAGGGAGGGCACACTGA------------CCGGGGCTTTGCCTGGCCTCAGAGTTTGTTATTCACC-AGGAAAAG-------CCTTCAGGTCTCCCAGACACTTGGACTGGTTCTGGAAAGACGTCCTTGAGGGC----GAGGAGGCTGCCGGCT-CCAGCAG--CAAGTCCCTGGGGCA----------------------------------GGGTGGTCCCAGAATGCATCTCCTG--GGGAGCTGGCCC-------TTTAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889692 215 + 204313951 TCAGA--------------------------GCTGCCAGGCACCAGCCAGCCCCGCTT-GGAGGCCACCGGGAGGGCACACTGA------------CCGCGGCTTTGCCTGGCCTCAGAGTTTGCTGTTC---------------------------CTTCCCAAGCACTTGGACTGATTCTGGGAAGATGTCCTTGAGGGC----AGGGAGGCTGCCG----CCAGCAG--CAACTCCCGGGGGCA----------------------------------GGGCAGGCCCAGAATGCACCTTCTGCCAGGAGCTGGCCC-------TTTAT
i calJac3.chr2             C 0 I 2
s saiBol1.JH378155          16043423 249 +  16417988 CCAGA--------------------------GCTGCCAGGCACCAGCCAGCCCCGCTT-GGAGGCCACCGGGAGGGCACACTGA------------CCGCGGCTTTGCCTGGCCTCAGAGTTTGCTGTTC---------------------------CCTCCCAAGTGCTTAGACTGATTCTGGGAAGATGTCCTTGAGGGC----AGGGAGGCAGCCG----CCAGCCG--AAACTCCCTGGGGCGGGTGGGCCCAGAATGCATCGAAACTCCCTGGGGCGGGTGGGCCCAGAATGCATCTTCTGCCGGGAGCTGGCCC-------TTTAT
i saiBol1.JH378155         C 0 I 2
s cebCap1.NW_016108158v1      130825 215 +    298490 TCAGA--------------------------GCTGCCAGGCACCAGCCAGCCCCAGTT-GGAGGCCACCGGGAGGGCACACTGA------------CCGAGGCTTTGCCTGGCCTCAGAGTTTGCTCTTC---------------------------CTTCCCAAACACTTGGACTGATTCTGGGAAGACGTCCTTGAGGGC----AGGGAGGCCGCCG----CCAGCAG--CAACTCCCGGGGGCA----------------------------------GGGCGGGCCCAGAATGCCTCTTCTGCTGGGAGCTGGCCC-------TTTAA
i cebCap1.NW_016108158v1   C 0 I 2
s otoGar3.GL873745           1906151 214 -   2165740 TCAGAACCTGGAATCTGAAAATCCCA---------------GCCAGTCAACCCGCCCAGGGAGGCTGCAGGGAGGACACATAGA------------CCAGGGTTTTGGCCAGCCCCAGAGTTTGTTATTCACC-AGGAAAAG-------CCTTCAGGCCTCCAGAGGACTTGGACTGG-----AGAGGGCATCTGAGAGGGCGGCAGGCGAGGGTGCCAGCT-CTGGCAA--C----TCTTGGGGCA----------------------------------GGGTGGGCCTAGAC-------------------------------------
i otoGar3.GL873745         I 42 I 420
s canFam3.chr34             11750472 269 +  42124431 CTGGAGCCTGGCCTCGCA--TTCCAGCGGTGGCTGCTGGGCTCC------CTGTGGCCGGGAGGTC-CCGAGGGGACAGACTGCGGGAAGGCTGATCCGAGGATTTGCCTGGCCCCAG----TGCTGCTCTCCTAGGAAGAGCTATAGCCCTGCAAGTCTCCAGCACAGGTGGACTTTGTCTCAGGGCACCTTCTCCAAGGT----GGGTG-GCCACCCGCT-GCAGCCGGCTCTGTTTCATGGTCA----------------------------------GGGCAAGCCCAGAATTCATTTTCCT----------ACCCATGTTAATTTAA
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25456082 659 -  25620257 I

a score=172678.000000
s hg38.chr5_KI270793v1_alt    106386 21 +    126136 AAAGGCCCACCCTGATAGCAC--------
s panTro5.chr5             181372609 21 - 181907262 AAAGGCCCACCCTGATAGCAC--------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183091396 21 - 183735486 AAAGGCCCACCCTGATAGCAC--------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185061 20 +    698298 AAAGGCCCA-CCTGATAGCAC--------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602878 20 - 121039945 AAAGGCCCA-CCTGATAGCAC--------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179558420 21 - 180051392 GAAGGCCCACCCTGATAGCAC--------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181291267 21 - 181584905 GAAGGCCCACCCTGATAGCAC--------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      297393 21 -   1764207 GAAGGCCCACCCTGATAGCAC--------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      302437 21 -  16742782 GAAGGCCCACCCTGATAGCAC--------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90604700 21 -  91010382 GAAGGCCCACCCTGATAGCAC--------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      200118 21 -    438239 GAAGGCCCACCCTGATAGCAC--------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      230677 21 -    514179 AAAGGCCCACCCTGATAGCAC--------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889909 21 + 204313951 GAAGGCCCACTCTGATAGCAC--------
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          16043674 21 +  16417988 GAAGGCCGGCTCTGATAGCAC--------
i saiBol1.JH378155         I 2 C 0
s cebCap1.NW_016108158v1      131042 21 +    298490 GAAGGCCCGCTCTGATAGCAC--------
i cebCap1.NW_016108158v1   I 2 I 21
s canFam3.chr34             11750741 29 +  42124431 AAAGCGTCGTCTGAGCACCACATCCTCAC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25456082 659 -  25620257 I
e otoGar3.GL873745           1906365 420 -   2165740 I

a score=233907.000000
s hg38.chr5_KI270793v1_alt    106407 44 +    126136 TCAGCG----GCTGTCTTTGTC--TC-GGATTGTTGGCTCC------------ACCTGGGAAG
s panTro5.chr5             181372630 45 - 181907262 CCAGCG----GCTGTCTTTGTC--TCGGGATTGTTGGCCCC------------ACCTGGGAAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183091417 45 - 183735486 CCAGCG----GCTGTCTTTGTC--TCGGGATTGTTGGCCCC------------ACCTGGGAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185081 45 +    698298 CCAGCG----GCTGTCTTTGTC--TCGGGATTGTTGGCCCC------------ACCTGGGAAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602898 40 - 121039945 CCAGCG----GCTGTCTTTGTC--CCGGG-----CGGCCCC------------GCCTGGGAAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179558441 49 - 180051392 CGAGTGAGCGGCTGTCTTTGTC--CCGGGGTTGTTGGCCCC------------ACCTGGGAAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181291288 49 - 181584905 CGAGTGAGCGGCTGTCTTTGTC--CCAGGGTTGTTGGCCCC------------ACCTGGGAAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      297414 49 -   1764207 CGAGTGAGCGGCTGTCTTTGTC--CCGGGGTTGTTGGCCCC------------ACCTGGGAAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      302458 49 -  16742782 CGAGCGAGCAGCTGTCTTTGTC--CCGGGGTTGTTGGCCAC------------ACCTGGGAAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90604721 45 -  91010382 GGAGCG----GCTGTCTTTGTC--CCAGGATTGTTGGCCCC------------ACCTGGGAAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      200139 49 -    438239 CGAGCGAGCAGCTGTCTTTGTC--CCGGGGTTGTTGGCCCC------------ACCTGGGAAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      230698 45 -    514179 CGAGCA----GCTGTCTTTGTC--CCGGGATTGTTGGCCCC------------ACCTGGGAAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889930 42 + 204313951 -AGGAG----GCGATCTCGGTC--CC-TGATTGTGGGCCC-------------CCCTGGGAAG
i calJac3.chr2             C 0 I 2
s saiBol1.JH378155          16043695 55 +  16417988 -AGGAG----ACTATCTCGATC--CA-GGATCGTGCCCCCCCACCCAGCCCCGCCCTGGGAAG
i saiBol1.JH378155         C 0 I 2
s canFam3.chr34             11750770 40 +  42124431 ----------TCCATTGCTGTCATCTGGGATTGCTGACTCC------------CCTTGAAGG-
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25456082 659 -  25620257 I
e otoGar3.GL873745           1906365 420 -   2165740 I
e cebCap1.NW_016108158v1      131063 21 +    298490 I

a score=857280.000000
s hg38.chr5_KI270793v1_alt    106451 123 +    126136 -----------GC--GAGCCTTA------------CCCTGTGCAG------CTGTGGGA-----------GCTCATCG----------CGGTATCC-----CACAGGCGCAGACCCTCTCCAGACCTGCCCTTTACGCTCCCTGTCGTCCCCTCAACCCACTGTGCACTCTG---------CAGCCCCG
s panTro5.chr5             181372675 125 - 181907262 -----------GCGAGAGCCTTA------------CCCTGTGCAG------CTGTGGGA-----------GCTCATCG----------CGGTATCC-----CACAGGCGCAGACCCTCTCCAGACCTGCCCTTTATGCTCCCTGTCGTCCCCTCAACCCACTGTGCACTCTG---------CAGCCCCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183091462 125 - 183735486 -----------GCGAGAGCCTTA------------CCCTGTGCAG------CTGTGGGA-----------GCTCATCG----------CGGTATCC-----CACAGGCGCAGACCCTCTCCAGACCTGCCCTTTCCGCTCCCTGTCGTCCCCTCAACCCACTGTGCACTCTG---------CAGCCCCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185126 110 +    698298 -----------GCGAGAGACTTA------------CCCTGTGCAG------CTGTGGGA-----------GCTCATCG----------CGGCAT-------------------CCCTCTCCAGACCTG-CCTCTACGCTCCCTGTCGTCCCCTCAACCCACTGTGCACTCTG---------CAGCCCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120602938 125 - 121039945 -----------GCGAGAGCCTCG------------CCCTGTGCAG------CTGTGAGA-----------GCTCATCG----------CCGCATCC-----CACCGGCGCAGACCCTCTCCAGACCTGCCCTCTACGCTCCCTGTCGTCCGCTCAACCCACTGTGCACTCTG---------CAGCCCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179558490 124 - 180051392 -----------GCAAGAGCCTCG------------CCTCGCGCAG------CTGTGAGA-----------GCTCATCG----------AAGCATCC-----CACCGGCACAGA-CCTCTCCAGACCTTCCCTCTACACTCGCTGTCATCCCCTCAACCCACTGTCCACGCTG---------CAGCCCCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181291337 124 - 181584905 -----------GCAAGAGCCTCG------------CCCCGCGCAG------CTGTGAGA-----------GCTCATTG----------AAGCATCC-----CACCGGCACAGA-CCTCTCCAAACCTTCCCTCTACACTCGCTGTCATCCCCTCAACCCACTGTCCACGCTG---------CAGCCCCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      297463 124 -   1764207 -----------GCAAGAGCCTCG------------CCCCGCGCAG------CTGTGAGA-----------GCTCATCG----------AAGCATCC-----CACCGGCACAGA-CCTCTCCAGACCTTCCCTCTACACTCGCTGTCATCCCCTCAACCCACTGTCCACGCTG---------CAGCCCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      302507 124 -  16742782 -----------GCAAGAGCCTCG------------CCCTGCGCAG------CTGTGAGA-----------GCTCATCG----------AAGCATCC-----CACCGGCGCAGA-CCTCTCCAGACCTGCCCTCTACACTCGCTGTCATCCCCTCAACCCACTGTCCACGCTG---------CAGCCCCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90604766 124 -  91010382 -----------GCAAGAGCCTCA------------CCCTGCGCAG------CTGTGAGA-----------GCTCATCA----------AAGCATCC-----CACCGGCGCAGA-CCTCTCCAGACCTGCCCTCTACACTCGCTGTCATCCCCTCAACCCACTGTCCACGCTG---------CAGCCCCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      200188 124 -    438239 -----------GCAAGAGCCTCG------------CCCTGCGCAG------CTGTGAGA-----------GCTCATCG----------AAGCATCC-----CACCGGCGCAGA-CCTCTCCAGACCTTCCCTCTACACTCGCTGTCATCCCCTCAACCCACTGTCCACGCTG---------CAGCCCCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      230743 124 -    514179 -----------GCAAGAGCCTCG------------CCCTGCGCAG------CTGTGAGA-----------GCTCATCA----------AAGCATCC-----CACTGGCGCAGA-CCTCTCCAGACCTGCCCTCTACACTCGCTGTCATCCCCTCAACCCACTGTCTACTCTG---------CAGCCCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203889974 123 + 204313951 -------------GAGAGCCTAG------------CCTTGTGCAG------CTGTGGGA-----------GTTCATCA----------CCACATCC-----CACCGGTGCAGACTCGCTCCACACCTGACCTCCACGCTCACTGTCATCCCCGCGACCCACTGTCTACTCTG---------CAGCCCCG
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          16043752 123 +  16417988 -------------AAGAGCCTAG------------CCTCGTGCAG------CTGTGGGA-----------GTCCATCA----------CCGCATCC-----CACCGGTGCAGACTCCCTCCAGACTTGCCCTCCACGCTCACCGTCATCCCCCCGACCCACACTCCACTCTG---------CAGCCCCG
i saiBol1.JH378155         I 2 C 0
s cebCap1.NW_016108158v1      131084 122 +    298490 -------------GAGAGCCTAG------------CCTTGTGCAG------CAGTGGGA-----------GTCCATCA----------CCGCATCC-----CA-GGGTGCAGACTCGCTCCAGATCCGCCCTCCACGTTCACAGTCACCCCCCCGACCCACTCTCCACTCTG---------CAGACCCG
i cebCap1.NW_016108158v1   I 21 C 0
s canFam3.chr34             11750810 188 +  42124431 TCAAGGCTTGGGGGAGACCTTGGCGGTCCTCAAGACCCCATGAAAAGGACCCTGAGGGAAGACCCATGGGGCTGACCAGCTACAGCTTCAGTGCCCTCCTGCTCTGGGCCACACCCTGCCCTGGCCCTGCCTGGGTCCCCAAGGTCCTCCTGCTGGCTCACTATGGGCCTTGGGTGACTCCCACCTCT-
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25456082 659 -  25620257 I
e otoGar3.GL873745           1906365 420 -   2165740 I

a score=297603.000000
s hg38.chr5_KI270793v1_alt    106574 28 +    126136 GCAGTGACAGCTGAGGTC-----------TGCTCTGGGT
s panTro5.chr5             181372800 28 - 181907262 GCAGTGACAGCTGAGGTC-----------TGCTCTGGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183091587 28 - 183735486 GCAGTGACAGCTGAGGTC-----------TGCTCTGGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185236 28 +    698298 GCAGTGACAGCTGAGGTC-----------TGCTCTGGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120603063 28 - 121039945 GCAGTGACAGCTGAGGTC-----------TGCTCTGGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179558614 28 - 180051392 GCAGTGACAGCTGAGGTC-----------TGCCCTGGGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181291461 28 - 181584905 GCAGTGACAGCTGAGGTC-----------TGCCCTGGGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      297587 28 -   1764207 GCAGTGACAGCTGAGGTC-----------TGCCCTGGGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      302631 28 -  16742782 GCAGTGACAGCTGAGGTC-----------TGCCCTGGGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90604890 28 -  91010382 GCAGTGACAGCTGAGGTC-----------TGCCCTGGGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      200312 28 -    438239 GCAGTGACAGCTGAGGTC-----------TGCCCTGGGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      230867 28 -    514179 GCAGTGACAGCTGAGGTC-----------TGCCCTGGGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890097 28 + 204313951 GCAGTGACAGCTGAGGTC-----------TGCCCTGGGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16043875 28 +  16417988 GCAGTGACAGCTGAGGTC-----------TGCCCTGGGT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      131206 28 +    298490 GCAGTGACAGCCGAGGTC-----------TGCCCTGGGT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25456741 26 -  25620257 GCAGTGACAGCTGAGGTC-----------TGCCT--GGT
i aotNan1.NW_018503740v1   I 659 C 0
s canFam3.chr34             11750998 39 +  42124431 GCCCTTTCGTTTGCGGCCCCCACCTCCTTCACTCTGGCC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1906365 420 -   2165740 I

a score=2042903.000000
s hg38.chr5_KI270793v1_alt    106602 235 +    126136  
s panTro5.chr5             181372828 235 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183091615 235 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185264 231 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120603091 234 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179558642 235 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181291489 235 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      297615 235 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      302659 235 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90604918 235 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      200340 235 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      230895 235 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890125 231 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16043903 215 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      131234 230 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25456767 226 -  25620257  
i aotNan1.NW_018503740v1   C 0 I 149
s otoGar3.GL873745           1906785 474 -   2165740  
i otoGar3.GL873745         I 420 I 2
s canFam3.chr34             11751037 470 +  42124431  
i canFam3.chr34            C 0 I 10

a score=618212.000000
s hg38.chr5_KI270793v1_alt    106837  93 +    126136 CAAGCC------------------------------TGCACCACAGCGGGAACTTCTCCAGTTTCA--CCCAGCCTCCTCCACATGCCCACAGCCCCCGGA-CTGGGGTCTGAACCTACTAAGCTG
s panTro5.chr5             181373063  93 - 181907262 CAAGCC------------------------------TGCACCACAGCGGGAACTTCTCCAGTTTCA--CCCAGCCTCCTCCACATGCCCACAGCCCCCGGA-CTGGGGTCTGAACCTACTAAGCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183091850  93 - 183735486 CAAGCC------------------------------TGCACCACAGCGGGAACTTCTCCAGTTTCA--CCCAGCCTCCTCCACATGCCCACAGCCCCCGGA-CTGGGGTCTGAACCTACTAAGCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185495  93 +    698298 CAAGCC------------------------------TGCACCACAGCGGGAACTTCTCCAGTTTCA--CCCAGCCTCCTCCACATGCCCACAGCCCCCGGA-CTGGGGTCTGAACCTACTAAGCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120603325  91 - 121039945 CGAGCC------------------------------TGCACCACAGCAGGAACTT---CAATTTCG--CCCAGCCTCTTCCACGTGCCCACAGCCCCTGGACCCGGGGTCCGAACCTACTAAGCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179558877  92 - 180051392 TGAGCC------------------------------TGCACCACAGCGGG-ACTTCTCCCACTTTA--CCCAGCCTCCTTCACATGCCCACAGCCCCCAGA-CCAGGGTCCGAACCTACTCAACTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181291724  92 - 181584905 TGAGCC------------------------------TGCACCACAGCGGG-ACTTCTCCCACTTTA--CCCAGCCTCCTTCACATGCCCACAGCCCCCAGA-CCAGGGTCCGAACCTACTCAACTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      297850  92 -   1764207 TGAGCC------------------------------TGCACCACAGCGGG-ACTTCTCCCACTTTA--CCCAGCCTCCTTCACATGCCCACAGCCCCCAGA-CCAGGGTCCGAACCTACTAAACTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      302894  92 -  16742782 TGAGCC------------------------------TGCACCACAGCGGG-ACTTCTCCCACTTTA--CCCAGCCTCCTTCACATGCCCACAGCCCCCAGA-CCAGGGTCCGAACCTACTAAACTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90605153  92 -  91010382 TGAGCC------------------------------TGCACCACAGCGGG-ACTTCTCCCACTTTA--CCCAGCCTCCTTCACATGCCCACAGCCCCCAGA-CCAGGGTCTGAACCTACTAAACTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      200575  92 -    438239 TGAGCC------------------------------TGCACCACAGCGGG-ACTTCTCCCACTTTA--CCCAGCCTCCTTCACATGCCCACAGCCCCCAGA-CCAGGGTCCGAACCTACTAAACTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      231130  92 -    514179 TGAGCC------------------------------TGCTCCGCAGCGGG-ACTTCTCCCACTTCC--CCCAGCCCCCTTCACATGCCCACAGCACCCAGA-CCAGGGTCCGAACCTACTACACCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890356  88 + 204313951 TGCACC------------------------------CGCACCACAGTGGAAAGCACTT--GTTTCAGCCCCAGCCTCCTGCACA-GGCCGCAGCCCCC--A-CCAGGGTCCT-ACTCACTAA-CTA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16044118  92 +  16417988 TGCGCC------------------------------TGCACCACAGTGGGAAGCACTCCAAGTTCAGCCCCAGCCCCCTCCACA-GCCCGCAGCCCCC-GA-CCTGGGTCCGAACTCACTCA-CTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      131464  92 +    298490 TGCGCC------------------------------CGCACCACAGTGGGAAGCACTCCAATTTCGGCCCCAGCCTCCTCCACA-GCCCGCAGCCCCC-GA-CCGGGGTCCATACTCACTAA-CTA
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1907261  91 -   2165740 TGTATC------------------------------TGCGCAAGTGAGGGAAACACTTGAGTTTCA--CCAACCCCCTTCCACA-CTCCACAGT-CCCAGG-CTGAGGCCGCTACTGACTAGGGTG
i otoGar3.GL873745         I 2 C 0
s canFam3.chr34             11751517 116 +  42124431 CAAGCCTGGAGGCCTCGTGGTGGTGTGTCCAGTTTTTGCACAAATGAGGGGAGGGCTTGGGTCCTG--GTGTGCTTCCTCCTTGACCCCGCAGT--------CCAGGGTTCGTGCTCGTGAAGCTC
i canFam3.chr34            I 10 C 0
e aotNan1.NW_018503740v1    25456993 149 -  25620257 I

a score=182994.000000
s hg38.chr5_KI270793v1_alt    106930 17 +    126136 CTTGGCACATTTTGTTG
s panTro5.chr5             181373156 17 - 181907262 CTTGGCACATTTTGTTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183091943 17 - 183735486 CTTGGCACATTTTGTTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185588 17 +    698298 CTTGGCACATTTTGTTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120603416 17 - 121039945 CTTGGCACATTTTGTTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179558969 17 - 180051392 CTTGGCACATTTTGCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181291816 17 - 181584905 CTTGGCACATTTTGCTG
i macFas5.chr6             C 0 I 1614
s macNem1.NW_012012389v1      297942 17 -   1764207 CTTGGCACATTTTGCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      302986 17 -  16742782 CTTGGCACATTTTGCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90605245 17 -  91010382 CTTGGCACATTTTGCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      200667 17 -    438239 CTTGGCACATTTTGCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      231222 17 -    514179 CTCGGCACATTTTGCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890444 14 + 204313951 CTTGGCACA---TGTTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16044210 17 +  16417988 CCTGGCATGTTTTGTTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      131556 17 +    298490 CTTGGTGCGTTTAGTTG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25457142 17 -  25620257 CTTGGCACATTTTGTTG
i aotNan1.NW_018503740v1   I 149 C 0
s otoGar3.GL873745           1907352 17 -   2165740 TTTGGCACATTTCGTTG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11751633 17 +  42124431 TTTGACCCCTCTCATCG
i canFam3.chr34            C 0 C 0

a score=1394396.000000
s hg38.chr5_KI270793v1_alt    106947 152 +    126136 TTTAAAATGGTCAGGGGTTGGCCACACTCTTTCAGTCTCAAGTTACACGAACAGAA-------ATGTCTCTTCCAGCAGAA-AAGAGCTGCCATTCCTG-TTGCTTTTCCAAACATTTGTTGAATTT--CTCACAC---ATCCTGAGAGTTTCTAACT-CACAGCCC
s panTro5.chr5             181373173 152 - 181907262 TTTAAAATGGTCAGGGGTTGGCCACACTCTTTCAGTCTCAAGTTACACGAACAGAA-------ATGTCTCTTCCAGCAGAA-AAGAGCTGCCATTCCTG-TTGCTTTTCCAAACATTTGTTGAATTT--CTCACAC---ATCCTGAGTGTTTCTAACT-CACAGCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183091960 152 - 183735486 TTTAAAATGGTCAGGGGTTGGCCACACTCTTTCAGTCTCAAGTTACACGAACAGAA-------ATGTCTCTTCCAGCAGAA-AAGAGCTGCCATTCCTG-TTGCTTTTCCAAACATTTGTTGAATTT--CTCACAC---ATCCTGAGTGTTTCTAACT-CACAGCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185605 152 +    698298 TTTAAAATGGTCAGGGGTTGGCCACACTCTTTCAGTCTCAAGTTACACGAACAGAA-------ATGTCTCTTCCAGCAGAA-AAGAGCTGCCGTTCCTG-TTGCTTTTCCAAACATTTGTTGAATTT--CTGACAC---ATCCTGAGTGTTTCTAACT-CACAGCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120603433 151 - 121039945 TTTAAAATGCTCAGGGGTTGGCCACACTCTTTCAGTCTCAAGTTACACAAACAGAA-------ATGTCTCTTCCAGCAGAA-AAGAGCTG-CATTCCTG-TTGCTTTTCCAAACATTTGTTGAATTT--CTCACAC---GTCCCGAGTGTTTCTAACT-CACAGCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179558986 149 - 180051392 TTTAAAA-GATCAGGGATTGGCCAAACTCTTTCAGTCTCAAGTTACACAAACAGAA-------ATG-CTCTTCCAACAGAA-AAGAGCTG-CATTCCTGTTTGCTTTTCCAAACATTTGCTGAATTT--CTCACAC---GTCCTGA-TGTTTCTAACT-CACAGCCC
i rheMac8.chr6             C 0 C 0
s macNem1.NW_012012389v1      297959 151 -   1764207 TTTAAAATGATCAGGGATTGGCCAAACTCTTTCAGTCTCAAGTTACACAAACAGAA-------ATGTCTCTTCCAACAGAA-AAGAGCTG-CATTCCTG-TTGCTTTTCCAAACATTTGCTGAATTT--CTCACAC---GTCCTGAGTGTTTCTAACT-CACAGCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      303003 151 -  16742782 TTTAAAATGATCAGGGATTGGCCAAACTCTTTCAGTCTCAAGTTACACAAACAGAA-------ATGTCTCTTCCAACAGAA-AAGAGCTG-CATTCCTG-TTGCTTTTCCAAACATTTGCTGAATTT--CTCACAC---GTCCTGAGTGTTTCTAACT-CACAGCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90605262 151 -  91010382 TTTAAAATGGTCAGGGATTGGCCAAACTCTTTCAGTCTCAAGTTACACAAACAGAA-------ATGTCTCTTCCAACAGAA-AAGAGCTG-CATTCCTG-TTGCTTTTCCAAACGTTTGCTGAATTT--CTCACAC---GTCCTGAGTGTTTCTAACT-CACAGCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      200684 151 -    438239 TTTAAAATGATCAGGGATTGGCCAAACTCTTTCAGTCTCAAGTTACACAAACAGAA-------ATGTCTCTTCCAACAGAA-AAGAGCTG-CATTCCTG-TTGCTTTTCCAAACATTTGCTGAATTT--CTCACAC---GTCCTGAGTGTTTCTAACT-CACAGCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      231239 151 -    514179 TTTGAAATGGTCAGGAGTTGGCCAGACTCTTTCAGTCTCAAGTTACACAAACAGAA-------ATGTCTCTTCCAACAGAA-AAGAGCTG-CATTCCTG-TTGCTTTTCCAGACATTTGCTGAATTT--CTCACAC---GTCCTGAGTGTTTCTAACT-CACAGCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890458 149 + 204313951 -TTTAAATGCTCAGGGGTTGGCCTCATTCTTACAGTCTCAAGTTACACAGACAGAA-------ATGTATCTTCCAACAGAA-AAGGGCTG-CAGGCCTG-TTGGTTTTCCAAACA-TTGTTGAATTT--CTCACAT---GTCCTGAGTGTTTCTAACT-CACAGCCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16044227 150 +  16417988 -TTTAAATGCTCAGGGGTTGGCCAGATTCCTACAGTCTCAAGTCACACAAACAGAA-------ATGTATCTTCCAACAGAA-AAGGGCTG-CAGTCCTC-TTGGTTTTCCAAACATTTGTTGAATTT--CTCACAT---GTCCTGAGTGTTTCTAACT-CACAGCCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      131573 150 +    298490 -TTTAAATGCTCAGGGGTTGGCCAGATTCTTACAGTCTCAAGTTACACAAACAGAA-------ATGTATCTTCCAACAGGA-AAGGGCTG-CAGTCCTC-CTGGTCTTCCAAACATTTGTTGAATTT--CTCACAA---GTCCTGAGTGTTTCTAACT-CACAGCCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25457159 150 -  25620257 -TTTAAATGCTCAGGGGTTGGTCAGATTCTTACAGTCTCAAGTTACACAAACAGAA-------ATGTATCTTCCAACAGAA-AAGGGCTG-CAGTCCTG-CTGGTTTTCCAAACGTTTGTTGAATTT--CTCACAT---GTCCTGAGTGTTTCCAACT-CACAGCCC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1907369 155 -   2165740 TTTAAAATGCTCAGGGATTGCCCAGACTCTTTCAATCTCAAGTTACACAAATAGAA-------ACGTATCTTCTAACAAAAGAGGAGGTG-CTTTTGTG-CTCATTTGCCAAACATTTGTTGCATTT--CTTGTACATTATCCTAAGTGTTGCTGGCT-CACATCTC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11751650 134 +  42124431 TGTAAGATGGTCAGG------------TATTTCAGTCTCAAGGCACAGGAACAGAGGGTTTCCGTCTATTTCCAAGCACTG-GCCAGGTT-CTTCCCAG-TGGTTT-------CAAGTGTTGGCTTTAGCTCACAT---GCCCC-------TCAGGCTGCAGAGCT-
i canFam3.chr34            C 0 C 0
e macFas5.chr6             181291833 1614 - 181584905 I

a score=37995.000000
s hg38.chr5_KI270793v1_alt    107099 3 +    126136 CAG
s panTro5.chr5             181373325 3 - 181907262 CAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183092112 3 - 183735486 CAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185757 3 +    698298 CAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120603584 3 - 121039945 CAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179559135 3 - 180051392 CAG
i rheMac8.chr6             C 0 I 810
s macFas5.chr6             181293447 3 - 181584905 cag
i macFas5.chr6             I 1614 C 0
s macNem1.NW_012012389v1      298110 3 -   1764207 CAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      303154 3 -  16742782 CAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90605413 3 -  91010382 CAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      200835 3 -    438239 CAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      231390 3 -    514179 CAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890607 3 + 204313951 CAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16044377 3 +  16417988 CGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      131723 3 +    298490 CAG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25457309 3 -  25620257 TAG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1907524 3 -   2165740 CAA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11751784 3 +  42124431 CAG
i canFam3.chr34            C 0 C 0

a score=62787.000000
s hg38.chr5_KI270793v1_alt    107102 7 +    126136 CCTTCTT
s panTro5.chr5             181373328 7 - 181907262 CCTTCTT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183092115 7 - 183735486 CCTTCTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185760 7 +    698298 CCTTCTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120603587 7 - 121039945 CCTTCTT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181293450 7 - 181584905 gCTTCTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      298113 7 -   1764207 GCTTCTt
i macNem1.NW_012012389v1   C 0 I 801
s cerAty1.NW_012009470v1      303157 7 -  16742782 GCTTCTT
i cerAty1.NW_012009470v1   C 0 I 823
s chlSab2.chr4              90605416 7 -  91010382 GCTTCTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      200838 7 -    438239 GCTTCtt
i manLeu1.NW_012110441v1   C 0 I 808
s colAng1.NW_012118799v1      231393 7 -    514179 CCTTCTT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890610 7 + 204313951 CCTTCTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16044380 7 +  16417988 CCTTCTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      131726 7 +    298490 GCTTCTT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25457312 7 -  25620257 ACTTCTT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1907527 4 -   2165740 ---CCTT
i otoGar3.GL873745         C 0 I 14
s canFam3.chr34             11751787 7 +  42124431 ATTCCTT
i canFam3.chr34            C 0 C 0
e rheMac8.chr6             179559138 810 - 180051392 I

a score=26655.000000
s hg38.chr5_KI270793v1_alt    107109 6 +    126136 CAAGCC
s panTro5.chr5             181373335 6 - 181907262 CAAGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183092122 6 - 183735486 CAAGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185767 6 +    698298 CAAGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120603594 6 - 121039945 CAAGCC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181293457 3 - 181584905 CAA---
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90605423 3 -  91010382 CAA---
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      231400 6 -    514179 CAAGCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890617 6 + 204313951 CGAGCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16044387 6 +  16417988 CGAGCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      131733 6 +    298490 CGAGCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25457319 6 -  25620257 CGAGCC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1907545 6 -   2165740 CAAGCC
i otoGar3.GL873745         I 14 C 0
s canFam3.chr34             11751794 6 +  42124431 CCAGCC
i canFam3.chr34            C 0 C 0
e manLeu1.NW_012110441v1      200845 808 -    438239 I
e cerAty1.NW_012009470v1      303164 823 -  16742782 I
e macNem1.NW_012012389v1      298120 801 -   1764207 I
e rheMac8.chr6             179559138 810 - 180051392 I

a score=3287712.000000
s hg38.chr5_KI270793v1_alt    107115 354 +    126136 ATTTGTAACCTGGTTGGGGAAATA-------AGAGTCCGGGTACCCTG-------------AAACCCACAGCAATGTTGATCCCAGGAGA-TTTCTACTCCAGGCAGCTTGGGACAGAGGATGGCCAGAGGGCCAGAGCTGCCTCAAGCAAACACTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGAGCCTGGGCAAGGAACAG--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--AGGCCGCGTGTCTG--GCTCCGGCAAGGGCTCCCCACAAGCCCCCTAT---TTGTGTGCACT----------GGGGTTCCCCTGCCTTTTACAGCATCTTTTTAAAATGCAGAAGGGGAGGCAAGGGCCG---AGGCCACGGAG-CCACTCCACAGCGCAGACCTC
s panTro5.chr5             181373341 354 - 181907262 ATTTGTAACCTGGTTGGGGAAATA-------AGAGTCCGGGGACCCTG-------------AAACCCACGGCAATGTTGATCCCAGGAGA-TTTCTACTCCAGGCAGCTTGGGACAGAGGATGGCCAGAGGGCCAGAGCTGCCTCAAGCAAACACTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGAGCCTGGGCAAGGAACAG--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--AGGCCGCGTGTCTG--GCTCCGGCAAGGGCTCCCCACAAGCCCCCTAT---TTGTGTGCACT----------GGGGTTCCCCTGCCTTTTACAGCATCTTTTTAAAATGCAGAAGGGGAGGCAGGGGCCG---AGGCCACGGAG-CCAGTCCACAGTGCAGACCTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183092128 354 - 183735486 ATTTGTAACCTGGTTGGGGAAATA-------AGAGTCCAGGGACCCTG-------------AAACCCACGGCAATGTTGATCCCAGGAGA-TTTCTACTCCAGGCAGCTTGGGACAGAGGATGGCCAGAGGGCCAGAGCTGCCTCAAGCAAACACTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGAGCCTGGGCAAGGAACAG--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--AGGCCGCGTGTCTG--GCTCCGGCAAGGGCTCCCCACAAGCCCCCTAT---TTGTGTGCACT----------GGGGTTCCCCTGCCTTTTACAGCATCTTTTTAAAATGCAGAAGGGGAGGCAGGGGCCG---AGGCCACGGAG-CCAGTCCACAGTGCAGACCTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      185773 354 +    698298 ATTTGTAACCTGGTTGGGGAAATA-------AGAGTCCGGGGACCCTG-------------AAACCCACGGCAATGTTGATCCCAGGAGA-TTTCTACTCCAGGCAGCTTGGGACAGAGGATGGCCAGAGGGCCAGAGCTGCCTCAAGCAAACACTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGAGCCTGGGCAAGGAACAG--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--AGGCCGCGTGTCTG--GCTCCGGCAAGGGCTCCCCACAAGCCCCCTAT---TTGTGTGCACT----------GGGGTTCCCCTGCCTTTTACAGCATCTTTTTAAAATGCAGAAGGGGAGACAGGGGCTG---AGGCCACGGAG-CCAGTCCACAGCACAGACCTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120603600 285 - 121039945 ATTTGTAACCTGGTTGGGGAAATA-------AGGGTCCGGGGACCCTG-------------AAACCCACGGCAATGTTGATGCCAGGAGG-TTTCTACTCCAGGCAGCTTGGGACAGAGGATGGCCAGAGGGCCAGAGCTGCCTCAAGCAAACGCTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGAGGCTGGGCAAGGAACAG--------------------GGGCTGCTGTCG-GCCCA-------CCAGCCTC--AGGCCTCGTGTCTG-AGCTCTGGCAAGGGGTCCCCGCAAGCCCCCTGT---TTGTGTGCACT----------GGGGTTCCCCTGCCTGTTAC--------------------------------------------------------------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179559948 356 - 180051392 ATTTGTAACCTAGTTGGGGAAATA-------AGAGTCCCGGGATCCTG-------------AAACCCACAGCAATGTTGATCCCAGGAGG-CTTCTACTCCAGGCAGCTTGGGACAGAGGATGGCTAGAGGGCCAGAGCTGCCCCAAGCAAATGCTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGTGCCTGGGCAAGGAACCG--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--AGGCTGCGTGTCTG-GGCTCCGTCAGGGGCTCCCCACAAGTCCCCTAT---TTGTGTGCACT---------GGGGGTTCCCCTGCCTGTTACAGCATCTTTTTAAAATGCAGAAGGGGAGGCAGGGGCCG---AGGCCAGGGAG-CCAGTCCACAGCCCAGACCTC
i rheMac8.chr6             I 810 C 0
s macFas5.chr6             181293460 355 - 181584905 -TTTGTAACCTAGTTGGGGAAATA-------AGAGTCCCGGGATCCTG-------------AAACCCACAGCAATGTTGATCCCAGGAGG-CTTCTACTCCAGGCAGCTTGGGACAGAGGATGGCTAGAGGGCCAGAGCTGCCCCAAGCAAATGCTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGTGCCTGGGCAAGGAACCG--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--AGGCTGCGTGTCTG-GGCTCCGTCAGGGGCTCCCCACAAGTCCCCTAT---TTGTGTGCACT---------GGGGGTTCCCCTGCCTGTTACAGCATCTTTTTAAAATGCAGAAGGGGAGGCAAGGGCCG---AGGCCAGGGAG-CCAGTCCACAGCCCAGACCTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      298921 356 -   1764207 ATTTGTAACCTAGTTGGGGAAATA-------AGAGTCCCGGGATCCTG-------------AAACCCACAGCAATGTTGATCCCAGGAGG-CTTCTACTCCAGGCAGCTTGGGACAGAGGATGGCTAGAGGGCCAGAGCTGCCCCAAGCAAATGCTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGTGCCTGGGCAAGGAACCG--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--AGGCTGCATGTCTG-GGCTCCGTCAGGGGCTCCCCACAAGTCCCCTAT---TTGTGTGCACT---------GGGGGTTCCCCTGCCTGTTACAGCATCTTTTTAAAATGCAGAAGGGGAGGCAGGGGCCG---AGGCCAGGGAG-CCAGTCCACAGCCCAGACCTC
i macNem1.NW_012012389v1   I 801 C 0
s cerAty1.NW_012009470v1      303987 356 -  16742782 ATTTGTAACCTAGTTGGGGAAATA-------AGAGTCCCGGGATCCTG-------------AAACCCACAGCAATGTTGATCCCAGGAGG-CTTCTACTCCAGGCAGCTTGGGACAGAGGATGGCTAGAGGGCCAGAGCTGCCCTAAGCAAATGCTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGTGCCTGGGCAAGGAACCA--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--AGGCTGCGTGTCTG-GGCTCCGTCAGGGGCTCCCCACAAGTCCCCTAT---TTGTGTGCACT---------GGGGGTTCCCCTGCCTGTTACAGCATCTTTTTAAAATGCAGAAGGGGAGGCAGGGGCCG---AGGCCAGGGAG-CCAGTCCACAGCACAGACCTC
i cerAty1.NW_012009470v1   I 823 C 0
s chlSab2.chr4              90605426 354 -  91010382 -TTTGTAACCTAGTTGGGGAAATA-------AGAGTCCCGGGATCTTG-------------AAACCCACAGCAATGTTGATCCCTGGAGG-CTTCTACTCCAGGCAGCTTGGGACAGAGGATGGCTAGAGGGCCAGAGCTGCCCCAAGCAAATGCTGGGGCTGGGGCCTCAGCAGGTAGCCCAGGTGCCGGGGCAAGGAACCG--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--AAGCTGCGTGTCTG-GGCTCCGGCAGGGGCTTCCCGCAAGTCCCCTAT---TTGTGTGCACT---------GGGGGTTCCCCTGCCTGTTACGGCATCTTTTTAAAATGCAGAAGGGGAGGCAGGGGCCG---AGGCCAGAGAG-CCAGT-CACAGCACGGACCTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      201653 356 -    438239 ATTTGTAACCTAGTTGGGGAAATA-------AGAGTCCCGGGATCCTG-------------AAACCCACAGCAATGTTGATCCCAGGAGG-CTTCTACTCCAGGCAGCTTGGGACGGAGGATGGCTAGAGGGCCAGAGCTGCCCCAAGCAAATGCTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGTGCCTGGGCAAGGAACCG--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--AGGCTGCATGTCTA-GGCTCCGTCAGGGGCTCCCCACAAGTCCCCTAT---TTGTGTGCACT---------GGGGGTTCCCCTGCCTGTTACAGCATCTTTTTAAAATGCAGAAGGGGAGGCAGGGGCCG---AGGCCAGGGAG-CCAGTCCACAGCACAGACCTC
i manLeu1.NW_012110441v1   I 808 C 0
s colAng1.NW_012118799v1      231406 356 -    514179 ATTTGTAACCTGCTTGGGGAAATA-------AGAGTCCCAGGATCCTG-------------AAACCCACAGCAATGTTGATCCCAGGAGG-CTTCTGCTCCAGGCAGCTTGGGACAGAGGATGGCTAGAGGGCCAGAGCTGCCCCAAGCGAACGCTGGGGCTGGGGCCTCAGCAGGTGGCCCAGGTGCCTGGGCAAGGAACTG--------------------GTGCTGCTGTTG-GCCCA-------CCAGCCTC--CGGCTGTGCGTCTG-GGCTCCGGCAGGGCCTCCCTGCAAGCCCCCTAT---TTGTGTGCACT---------GGGGGTTCCTGTGCCTGTTACAGCATCTTTTTAAAATGCAGATGGGGAGGCAGGGGCCG---AGGCCAGGGAG-CCAGTCCACAGCACAGACCTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890623 353 + 204313951 ATTTATAACCTGATTGGGGAAATA-------AGACACCGGGGACCCTG-------------AAACCCACAGCAGTGTTGATCCCAGGAGG-TTTCTACTCCAGGCACCTTGGGACAGAGCAC--------AGCCAGAGCTGCCCCAAGCGTATGCTGTGGCTGGGGCCCCAGCAGGTGTCCCAGGAGCCCGGGCAAGGAGCAG--------------------GCTCTGCTGTCG-GCCCA-------CCAGCCTC--GGGCCACATGTCTG-GGCTCCAGCGAGGATCCCCCACAAATCCCCTAT---TTGTGTGCACTGAGGCCTCTGGGGGTTTCT----CTGTTAGAGCATCTTTTTAAAATGCAGAAGGAGAGGCAGGAACTG---AGGCCAGGGAG-CCAGTCCACAGCACAGACCTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16044393 328 +  16417988 ATTTGTAACCCGACTGGGGAAATA-------AAACTCCGGGGACCCTG-------------AAACCCACGGCGGTGTGGATCCCAGGAGG-TTTCTACTCCAGGCCGCTTGGGACAGAGCAC--------GGCCAGAGCTGCCCCAAGCAAATGCTGCGACTGGGGCCTCAGCAGGTGTCCCAGGAGCCCGGGCAAGGAGCAG--------------------GCTCCACTGTCA-GCCCA-------CC---------------------------------AGGGTCCCCCACGAGTGCCCTAT---TTGTGTGCACTGGGACCTCTGGGGGTTTCTCTGACTGTTAGAGCATCTTTTTAAAATGCAGAAGGGGAGGCAGGAACTG---AGGCCGGGCAGCCCAGTCCGTAGCACAGGCCTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      131739 357 +    298490 ATTTGTAGCCTGATTGGGGAAATA-------AGACTCTGGGGACCCTG-------------AAACCCACATCAGTGTTGATCCTAAGAGG-TTTCTACTCCAGGCAGCTTGGGACAGGGCAC--------GGCCAGAGCTGCCCCAAGCAAATGCTCTGGCTGGGGCCTCAGCAGGTGTCCCAGGAGCCCCAGAAAGGAGCAG--------------------GCTCTGCTGTCG-GCCCA-------CCAGCCTT--GGGCCGTGTGTCTG-GGCTCCAGCAAGGGTCCCCCACAAGTCCCCTGT---TTGTGTGCACTGGGACCTCTGGGGGTTTCTCTGACTATTAGAGCTTCTTTTTAAAATGCAGAAGGGGAGGCAGGAACTG---AGGCCAGGGAG-CCAGTCCACAGCACAGACCTC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25457325 357 -  25620257 ATTTGTAACCTGATTGGGGAAGTA-------AGACTCCGGGGACCCTG-------------AAACCCACGGCAGTGTTGATCGCAGGAGG-TTGCTACTCCAGGCGGCTAGGGACAGAGCAC--------GGCCAGAGCTGCCCCAAGCAAATGCTGTGGCTGGGGCCTCAGCAGGTGTCCCAGGAGCCCGGGCAAGGAGCAG--------------------TCTCTGCCGTGG-GCCCA-------CCAGCCTC--GGGCTGCGTGTCTG-GGCTCCAGCATGGGTCCCCTACAAGTCCCCTAT---TTGTGTGCACTGGGGCCTCTGGGGGTTTCTCTGACTGTTAGAGCATCTTTTTAAAATGCAGAAGGGGAGGCAGGAACTG---AGGCCAGAGAG-CCAGTCCACAGCACAGACCTC
i aotNan1.NW_018503740v1   C 0 I 49
s otoGar3.GL873745           1907551 327 -   2165740 ATTTGTAAGCTGGTTGGGGAAATA-------ATA--CTTAGGACCCTG-------------GAACACAGGCCACATCTGATTCCAGGAGGTTTTTTACTTCAGGCAGCTTCAGCGAGAG---AGGTGGAAGACAACAGCTGCC-AAAGAAAACA---------------CAGCAGGTG--TCAGGACCCTGGGAGGGGACCAG--------------------G---TGCCTTTA-GCCCA-------TGGACCTG--GGACCCTGAGCCTG-GGCTGTGGCAAG--CTCCCCAT-----CCTTGTCAATTTGGTTCCCC----------AGGGTCTCCCTGCCTGTCATTACAGC-TCTAAAAATTCAGAAGGGGAGGAAGGGGCTGCCAAAGCCAGGGTG--CAATCCACTGCCTAGGGGCA
i otoGar3.GL873745         C 0 I 9
s canFam3.chr34             11751800 379 +  42124431 ATGTGTCACCTTGCTGGGCAACGAGATGCCGAGACACTGGGGACCCTGGGACAAAGCAATCATACCCACAAATGTTTTAAGCC----AGC-TTCTCACCTCATGTGGCTTGGGACAGAGAAAGGCCAGGGGGC-AGGGTCACAGCCACCAGTGACTGGGCCCAGGAGTCCTGAGTTCACGCCTGGAAGCTCTGCTGGAAGCAGCGCCTTTGCACTGGTGAGAAGTGTGGCTGGTGAGCCCAGGGACCCCCAGCCCCTAAAGCCCTGCGTCTGCAGCTCAGTGAAGGACTCATTGGAAGC-----AT---TTG---GCCTC----------CAGGGGCCCCTGCCTGTTGCTCTACCCTTCAGGGATTCAGAAGGAGAAGCAGGAACCC------CTACACAG-GTGGTGCCTG-----------
i canFam3.chr34            C 0 C 0

a score=112848.000000
s hg38.chr5_KI270793v1_alt    107469 15 +    126136 CCAGACTGAGAGGAC
s panTro5.chr5             181373695 15 - 181907262 CCAGACTGAGAGGAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183092482 15 - 183735486 CCAGACTGAGAGGAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      186127 15 +    698298 CCAGACTGAGAGGAC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179560304 15 - 180051392 CCAGACTGAGAGGAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181293815 15 - 181584905 CCAGACTGAGAGGAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      299277 15 -   1764207 CCAGACTGAGAGGAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      304343 15 -  16742782 CCAGACTGAGAGGAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90605780 15 -  91010382 CCGGACTGAGAGGAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      202009 15 -    438239 CCAGACTGAGAGGAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      231762 15 -    514179 CCGGACTGAGAGGAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890976 15 + 204313951 CTGGGCTGAGAGGGT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16044721 15 +  16417988 CTGGGCTGAGAGGAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      132096 15 +    298490 GTGGGCTGAGAGGGT
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1907887 15 -   2165740 CCAGAAGGTGAGAAC
i otoGar3.GL873745         I 9 C 0
s canFam3.chr34             11752179 14 +  42124431 CTGGGCCGGGGGGT-
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25457682 49 -  25620257 I
e nomLeu3.chr6             120603885  0 - 121039945 C

a score=8661432.000000
s hg38.chr5_KI270793v1_alt    107484 906 +    126136  
s panTro5.chr5             181373710 916 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183092497 915 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      186142 914 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120603885 904 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179560319 921 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181293830 921 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      299292 920 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      304358 921 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90605795 906 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      202024 906 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      231777 928 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203890991 896 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16044736 895 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      132111 895 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25457731 872 -  25620257  
i aotNan1.NW_018503740v1   I 49 I 35
s otoGar3.GL873745           1907902 923 -   2165740  
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11752193 668 +  42124431  
i canFam3.chr34            C 0 C 0

a score=92401.000000
s hg38.chr5_KI270793v1_alt    108390 17 +    126136 CCATGGGGCCTGAACTC
s panTro5.chr5             181374626 17 - 181907262 CCATGGGGCCCGAACTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093412 17 - 183735486 CCATGGGGCCCGAACTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187056 17 +    698298 CCATGGGGCCCAAACTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120604789 17 - 121039945 CCATGGGGCCCGAACTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561240 16 - 180051392 TCAT-GGACCCAAACTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181294751 16 - 181584905 TCAT-GGACCCAAACTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300212 16 -   1764207 TCAT-GGACCCAAACTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305279 16 -  16742782 TCAT-GGACCCAAACTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90606701 16 -  91010382 TCAT-GGACCCAAACTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      202930 16 -    438239 TCAT-GGACCCAAACTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      232705 17 -    514179 TCATGGGACCCAAACTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203891887 17 + 204313951 TTGTGGGGCCCAGACTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16045631 17 +  16417988 TTGTGGGGCCCGGACCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      133006 17 +    298490 TTGTGAGGCCCGGACTC
i cebCap1.NW_016108158v1   C 0 I 26
s canFam3.chr34             11752861  8 +  42124431 -------CCCCTGGC--
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25458603 35 -  25620257 I
e otoGar3.GL873745           1908825  0 -   2165740 C

a score=217894.000000
s hg38.chr5_KI270793v1_alt    108407 37 +    126136 CAGAGCTGGGCAGCGCTGGCTCAGGGAGGTGGCGCCT
s panTro5.chr5             181374643 37 - 181907262 CAGAGCTGGGCAGCGCTGGCTCAGGGAGGTGGCGCCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093429 37 - 183735486 CAGAGCTGGGCAGCGCTGGCTCAGGGAGGTGGCGCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187073 37 +    698298 CAGAGCTGGGCAGCGCTGGCTCAGGGAGGTGGCGCCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120604806 37 - 121039945 CAGAGCTGGGCAGTGCTGGCTCAGGGAGGTGGGGCCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561256 37 - 180051392 CAGAGCTGGGCAGCGCTGGCTCAGGGAGGTGGTGCCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181294767 37 - 181584905 CAGAGCTGGGCAGCGCTGGCTCAGGGAGGTGGTGCCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300228 37 -   1764207 CAGAGCTGGGCAGCGCTGGCTCAGGGAGGTGGCGCCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305295 37 -  16742782 CAGAGCTGGGCAGCGCTGGCTCAGGGAGGTGGTGCCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90606717 37 -  91010382 CAGAGCTGGGCAGCGCTGGCTCAGGGAGGTGGCGCCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      202946 37 -    438239 CAGAGCTGGGCAGCGCTGGCTCAGGGAGGTGGTGCCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      232722 37 -    514179 CAGAGCTGGGCAGCGCTGGCTTAGGGAGGTGGCGCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203891904 18 + 204313951 ----------------TGG---AGGGAGATGGCGTGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16045648 18 +  16417988 ----------------TGG---AGGGAGATGGTGTAG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1908825 27 -   2165740 TTGGGCTGCCCAGCCTGGGCCCAGCCA----------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11752869 21 +  42124431 CAGAA-TGGGCTGCAATGGC--AG-------------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25458603 35 -  25620257 I
e cebCap1.NW_016108158v1      133023 26 +    298490 I

a score=23861.000000
s hg38.chr5_KI270793v1_alt    108444 7 +    126136 TGA-GGGT
s panTro5.chr5             181374680 7 - 181907262 TGA-GGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093466 7 - 183735486 TGA-GGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187110 7 +    698298 GGA-GGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120604843 7 - 121039945 TGA-GGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561293 8 - 180051392 TGAGGGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181294804 8 - 181584905 TGAGGGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300265 8 -   1764207 TGAGGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305332 8 -  16742782 TGAGGGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90606754 8 -  91010382 TGAGGGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      202983 8 -    438239 TGAGGGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      232759 8 -    514179 CGAGGGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203891922 7 + 204313951 TGAGGGG-
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16045666 7 +  16417988 TGAGGGG-
i saiBol1.JH378155         C 0 I 1
s aotNan1.NW_018503740v1    25458638 7 -  25620257 TGAGGGG-
i aotNan1.NW_018503740v1   I 35 C 0
e otoGar3.GL873745           1908852 0 -   2165740 C
e cebCap1.NW_016108158v1      133023 26 +    298490 I
e canFam3.chr34             11752890 0 +  42124431 C

a score=607239.000000
s hg38.chr5_KI270793v1_alt    108451 65 +    126136 TAGGACCTGAGCAGCGGCAGTGACTGCCCACGGGGAAACCAGGACAGTGGGGCTGGGTGGG-----GGC----G
s panTro5.chr5             181374687 65 - 181907262 TAGGACCTGAGCAGCGGCAGTGACTGCCCACGGGGAAACCGGGACAGTGGGGCTGGGTGGG-----GGC----G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093473 65 - 183735486 TAGGACCTGAGCAGCGGCAGTGACTGCCCACGGGGAAACCGGGACAGTGGGGCTGGGTGGG-----GGC----A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187117 66 +    698298 TAGGACCTGAGCAGCGGCAGTGACTGCCCACGGGGAAACCGGGACAGTGGGGCTGGGTGGG-----GGTG---G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120604850 64 - 121039945 TAGGACCTGAGCAGCGGCAGTGACGGCCCACGGGAAAACCAGGACAGTGGGGTTGGGTGGC-----GGC-----
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561301 69 - 180051392 TAGGACCTGAGCAGCGGCAGTGATGGCCCACGGGGAAACCAGGACAGTGGGGCTGGGTGGG-----GGCGGGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181294812 69 - 181584905 TAGGACCTGAGCAGCGGCAGTGATGGCCCACGGGGAAACCAGGACAGTGGGGCTGGGTGGG-----GGCGGGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300273 69 -   1764207 TAGGACCTGAGCAGCGGCAGTGATGGCCCACGGGGAAACCAGGACAGTGGGGCTGGGTGGG-----GGCGGGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305340 69 -  16742782 TAGGACCTGAGCAGCGGCAGTGATGGCCCACGGGGAAACCAGGACAGTGGGGCTGGGTGGG-----GGCGGGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90606762 65 -  91010382 TAGGACCTGAGCAGCGGCAGTGATGGCCCACGGGGAAACCAGGACAGTGGGGCTGGGTGGG-----GGCG----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      202991 69 -    438239 TAGGACCTGAGCAGCGGCAGTGATGGCCCACGGGGAAACCAGGACAGTGGGGCTGGGTGGG-----GGCGGGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      232767 69 -    514179 TAGGACCTGAGCAGTGGCAGTGATGGCCCATGGGGAAACCAGGACAATGGGGCTGGGTGGG-----GGCGGGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203891930 65 + 204313951 TGGGACCTGAGCAGCAGCAGTGGCGGCCCACGGGGGAACCAGGACAGTGGGGCTGGGTGTG-----GGCG----
i calJac3.chr2             I 1 I 8
s saiBol1.JH378155          16045674 65 +  16417988 TGGGAGCTGAGCAGCGGCAGTGGCAGCCCACGGGGGAACCAGGACAGTGCGGCTGGGTGCA-----GGCA----
i saiBol1.JH378155         I 1 I 8
s cebCap1.NW_016108158v1      133049 65 +    298490 TGGGACCTGAGCAGCAGCAGTGGCAGCCCCCGGGGGATCCAGGGCAGTGGGGCTGGGTGCG-----GGTG----
i cebCap1.NW_016108158v1   I 26 I 8
s aotNan1.NW_018503740v1    25458645 65 -  25620257 TGGGACCTGAGCAGCAGCAGCGGCGGCCCACAGGGGAACCAGAACAGCGGGGCTGGGTGCG-----GGCG----
i aotNan1.NW_018503740v1   C 0 I 20
s otoGar3.GL873745           1908852 59 -   2165740 CAGGAGTTGTGCAGGGACC---CCAGCCCTCTGGGG----TGGGCAGCGGGGCTG---GCA-----GGCAGGCA
i otoGar3.GL873745         C 0 I 6
s canFam3.chr34             11752890 52 +  42124431 -AGGCCCAGGGGAGGGGCAGTG----------------TCAGGGTGGGTGGGCTGGTCAGACACCCAGT-----
i canFam3.chr34            C 0 C 0

a score=459327.000000
s hg38.chr5_KI270793v1_alt    108516 62 +    126136 GTGGGGGCAGGCTCTCGAAGTGGAGCTTGTGTTGCTGA-GG-GATGTGA---TGGCGGAGGCCCAGG
s panTro5.chr5             181374752 62 - 181907262 GGGGGGGCAGGCTCTCGAAATGGAGCTTGTGTTGCTGA-GG-GATGTGA---GGGGGGAGGCCCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093538 62 - 183735486 GTGGGGGCAGGCTCTCAAAATGGAGCTTGTGTTGCTGA-GG-GATGTGA---GGGGGGAGGCCCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187183 62 +    698298 GGGGGGGCAGGCTCTCGAAGTGGAGCTTGTGTTGCTGA-GG-GATGTGA---GGGGGGAGGCCCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120604914 62 - 121039945 GGGGGGACAGGCTCTCGAAGTGGAGCTTGTGTTGCTGA-GG-GATGTGA---GGGGGGAGGCCCAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561370 62 - 180051392 GGTGGGACAGGCTCTGGAAGAGGAGTTCGTGTTGCTGA-GG-GGTTTGA---GGGGGGAGGCCCAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181294881 62 - 181584905 GGTGGGACAGGCTCTGGAAGAGGAGTTCGTGTTGCTGA-GG-GGTTTGA---GGGGGGAGGCCCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300342 62 -   1764207 GGTGGGACAGGCTCTGGAAGAGGAGTTCGTGTTGCTGA-GG-GGTTTGA---GGGGGGAGGCCCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305409 63 -  16742782 GGTGGGACAGGCTCTGGAAGAGGAGTTCGTGTTGCTGA-GGAGGTTTGA---GGGGGGAGGCCCAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90606827 54 -  91010382 ---------GGCTCTGGAAGAGGAGCTCGTGTTGCTGAGGG-GGTTTGA---GGGGGGAGGCCCAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203060 62 -    438239 GGTGGGACAGGCTCTGGAAGAGGAGTTCGTGTTGCTGA-GG-GGTTTGA---GGGGGGAGGCCCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      232836 63 -    514179 GGTGGGACAGGCTCTGGAAGAGGAGCTCGTGTTGCTGAGGG-GGTTTGA---GGGGGGAGGCCCAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892003 56 + 204313951 GGTGGGACAGGCTCTGGAAGTGGA---------GCTGA-GG-GGTTTGGGGAGGGGGGAGGCCGAGG
i calJac3.chr2             I 8 C 0
s saiBol1.JH378155          16045747 53 +  16417988 GGTGGGACAGGCTCTGGAAGTGGA---------GCTGA-GG-GGTTTGG---TGGGGGAGGCTGAGG
i saiBol1.JH378155         I 8 C 0
s cebCap1.NW_016108158v1      133122 53 +    298490 GGTGGGACAGGCTCTGGAAGTGAA---------GTTGA-GG-AGTTTGC---GGGGGGAGGCCGAGG
i cebCap1.NW_016108158v1   I 8 C 0
s otoGar3.GL873745           1908917 41 -   2165740 GGTGGGCCATATTCTGGAAGTAGA------GTTGCTAG-AG-GGGTAGG------------------
i otoGar3.GL873745         I 6 C 0
s canFam3.chr34             11752942 62 +  42124431 TTGGGGACAGGCCCTGGACGTGGAGCTCATGGGGACGT-GG-AGCCTCA---GGCCAGAGGCTCAGG
i canFam3.chr34            C 0 I 79
e aotNan1.NW_018503740v1    25458710 20 -  25620257 I

a score=427957.000000
s hg38.chr5_KI270793v1_alt    108578 56 +    126136 CCGCCCCACATCTTGGTGAACCCTGGCTGGAAGGGCAGGCAGGAGCGAGACGGGTA
s panTro5.chr5             181374814 56 - 181907262 CCGCCCCACATCTTGGTGAACCCTGGCTGGAAGGGCAGGCAGGAGCAAGACGGGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093600 56 - 183735486 CCGCCCCACATCTTGGTGAACCCTGGCTGGAAGGGCAGGCAGGAGCAAGACAGGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187245 56 +    698298 CCGCCCCACATCTTGGTGAACCCTGGCTGGAAGGGCAGGCAGGAGCGAGACGGGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120604976 56 - 121039945 CCGCCCCACATCTTGGTGAACCCTGGCTGGAAGGGCGGGCAGGAGCGAGACGGGTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561432 56 - 180051392 CTGTCCCACGTCTTGACAAGCCCTGGCTGGAAGGGCAGGTGGGAGCGAGATGGGTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181294943 56 - 181584905 CTGTCCCACGTCTTGACAAGCCCTGGCTGGAAGGGCAGGTGGGAGCGAGATGGGTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300404 56 -   1764207 CTGTCCCACGTCTTGACAAGCCCTGGCTGGAAGGGCAGGTGGGAGCGAGACGGGTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305472 56 -  16742782 CTGCCCCACGTCTTGACAAGCCCTGGCTGGAAGGGCAGGTGGGAGCGAGACGGGTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90606881 56 -  91010382 CTGCCCCACGTCTTGATGAGCCCTGGCTGGAAGGGCGGGTGGGAGCGAGACAGGTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203122 56 -    438239 CTGTCCCACGTCTTGACAAGCCCTGGCTGGAAGGGCAGGTGGGAGCGAGACAGGTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      232899 56 -    514179 CTGCCCCACGTCTTGGTGAGCCCTGGCTGGAAGGGCAGGTGGGAGCGAGATGGGTA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892059 55 + 204313951 CTGCCCCACATTTTGCTT-GCTCTGGCTGGAAGGGCAGGCAGGAGCAAGACGGGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16045800 55 +  16417988 CTGCCCCACATTTTGCTT-GCTCTGGCTGGAAGGGCAGGCAGGAGCAAGACGGTTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      133175 55 +    298490 CTGCCCCACATTTTGCTT-GCTCTGGCTGGAAGGGCAGGCAGGAGCAAGATGGGGG
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1908958 19 -   2165740 -------------------------GCTGGATGG---GGTAAGAGCC---------
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25458710 20 -  25620257 I
e canFam3.chr34             11753004 79 +  42124431 I

a score=360565.000000
s hg38.chr5_KI270793v1_alt    108634 39 +    126136 TCTGGA-GTCTGCAGTGCCT----CGCGCAGCCGTAGGAGGGTC
s panTro5.chr5             181374870 39 - 181907262 TCTGGA-GTCTGCAGTGCCT----CGCGCAGCCGTAGGAGGGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093656 24 - 183735486 TCTGGA-GTCTGCAGTGCCT----TGCGC---------------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187301 39 +    698298 TCTGGA-GTCTGCAGTGCCT----CGCGCAGCCGTAGGAGGGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605032 39 - 121039945 TCTGGA-GTCTGCAGTGCCT----CGTGCAGCCGTAGGAGGGTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561488 39 - 180051392 TCTGGA-GTCTGCAGTGCCT----CGCACAGCCATAGGAGGGTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181294999 39 - 181584905 TCTGGA-GTCTGCAGTGCCT----CGCACAGCCATAGGAGGGTC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300460 39 -   1764207 TCTGGA-GTCTGCAGTGCCT----CGCACAGCCATAGGAGGGTC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305528 39 -  16742782 TCTGGA-GTCTGCAGTGCCT----CGCACAGCCATAGGAGGGTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90606937 39 -  91010382 TCTGGA-GTCTGCAGTGCCT----CGCACAGCCATAGGAGGGTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203178 39 -    438239 TCTGGA-GTCTGCAGTGCCT----CGCACAGCCATAGGAGGGTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      232955 39 -    514179 TCTGGA-GTCTGCAGTGCCT----CGCACAGCCATAGGAGGGTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892114 38 + 204313951 TCTGAA-GTTGGCAATGCCT----TGCGCAGCCACAGGA-GGTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16045855 39 +  16417988 TGTGGA-GTCAGCAATGCCT----TGCGCAGCCCCAGGAGGGTC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      133230 39 +    298490 TCTGGA-GTCAGCAATGCCT----TGCGCAGCCGCAGGAGGGTC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25458730 39 -  25620257 TCTGGA-GTCTGCAATGCCT----TGTGCAGCCACAGGAGGGTC
i aotNan1.NW_018503740v1   I 20 I 95
s otoGar3.GL873745           1908977 44 -   2165740 TCTGCCTGTCTGCATGGCCTGCTCTGTTCCCCCCCAGAAGTGTC
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11753004 79 +  42124431 I

a score=198306.000000
s hg38.chr5_KI270793v1_alt    108673 32 +    126136 -AGGAGGACG----CTAGGGCACAGG-----GTCAGGAGTGC----
s panTro5.chr5             181374909 32 - 181907262 -AGGAGGACG----CTGGGGCGCAGG-----GTCAGGAGTGC----
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187340 31 +    698298 -AGGAGGACG----C-GGGGCGCAGG-----GTCAGGAGTAC----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605071 32 - 121039945 -GGGAGGACA----CTGGGGCGCAGG-----GTCAGGAGTGC----
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561527 32 - 180051392 -GGGAGGACA----CTGGGGCGCAGG-----GTCAGAAGAGC----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181295038 32 - 181584905 -GGGAGGACA----CTGGGGCGCAGG-----GTCAGAAGAGC----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300499 32 -   1764207 -GGGAGGACA----CTGGGGCGCAGG-----GTCAGAAGAGC----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305567 32 -  16742782 -GGGAGGACA----CTGGGGCGCAGG-----GTCAGAAGAGC----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90606976 32 -  91010382 -GGGAGGACA----CTGGGGTGCAGG-----GTCAGAAGAGC----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203217 32 -    438239 -GGGAGGACA----CTGGGGCGCAGG-----GTCAGAAGAGC----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      232994 32 -    514179 -GGGAGGACA----CTGGGGCGCAGG-----GTCAGAAGAGC----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892152 32 + 204313951 -ACGTAGGTA----TGGGGGCGCAGA-----GTCAGGAGCGC----
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16045894 32 +  16417988 -GGGTAGACA----TGGCGGCACAGA-----GTCAGAAGCGT----
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      133269 32 +    298490 -GGGTAGACA----TGGGGGCGAAGA-----GTCAGGAGCGC----
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1909021 46 -   2165740 AGGGAAGATGGCACCAGGGTCGCAGAGGTGTGTTGGGCGAGCAAGG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25458769 95 -  25620257 I
e canFam3.chr34             11753004 79 +  42124431 I
e panPan2.chr5             183093680  0 - 183735486 C

a score=27080.000000
s hg38.chr5_KI270793v1_alt    108705 8 +    126136 AGCCCCCT-
s panTro5.chr5             181374941 8 - 181907262 AGCCCCCT-
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187371 8 +    698298 AGCCCCCT-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605103 8 - 121039945 AGCCCCCC-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561559 7 - 180051392 AGCCTCC--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181295070 7 - 181584905 AGCCTCC--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300531 7 -   1764207 AGCCTCC--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305599 7 -  16742782 AGCCTCC--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90607008 7 -  91010382 AGCCTCC--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203249 7 -    438239 AGCCTCC--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      233026 7 -    514179 AGCCTTC--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892184 6 + 204313951 AGCCCC---
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16045926 7 +  16417988 AGCCCCC--
i saiBol1.JH378155         C 0 I 1
s cebCap1.NW_016108158v1      133301 7 +    298490 AGCCCCC--
i cebCap1.NW_016108158v1   C 0 I 24
s otoGar3.GL873745           1909067 3 -   2165740 AGC------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11753083 8 +  42124431 AGCCCTC-C
i canFam3.chr34            I 79 C 0
e aotNan1.NW_018503740v1    25458769 95 -  25620257 I
e panPan2.chr5             183093680 0 - 183735486 C

a score=-68542.000000
s hg38.chr5_KI270793v1_alt    108713 49 +    126136 GCTCTGA-GCGGCGCAGCC-----CCCCC------------------------ACCCCCCT--------------------CTGAGC-GGCGTTACCCCC
s panTro5.chr5             181374949 49 - 181907262 GCTCTGA-GCGGCGCAGCC-----CCCCC------------------------ACCCCCCT--------------------CTGAGC-GGCATTACCCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093680 38 - 183735486 -------------------------------------------------------------NNNNNNNNNNNNNNNNNNNNCTGAGC-GGCATTACCCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187379 48 +    698298 GCTCTGA-GCGGCGCAGCC-----CCCCC------------------------CACCCCCT--------------------CTGAGC-GGCGTTA-CCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605111 42 - 121039945 GCTCTGA-GTGGCGCAG-----------C------------------------ACCCCCCC--------------------CCCAGC-GGCATTA-CCGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561566 23 - 180051392 -------------------------------------------------------CCATCT--------------------CTGAGC-GGTGCAC-CTCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181295077 23 - 181584905 -------------------------------------------------------CCATCT--------------------CTGAGC-GGTGCAC-CTCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300538 23 -   1764207 -------------------------------------------------------CCATCT--------------------CTGAGC-GGTGCAC-CTCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305606 23 -  16742782 -------------------------------------------------------CCATCT--------------------CGGAGC-GGTGCAG-CTCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90607015 23 -  91010382 -------------------------------------------------------CCATCT--------------------CTGAGC-GGTGCAG-CTCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203256 23 -    438239 -------------------------------------------------------CCATCT--------------------CGGAGC-GGTGCAG-CTCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      233033 23 -    514179 -------------------------------------------------------CCATCT--------------------CTGAGC-GGTGCAG-CCTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892190 24 + 204313951 -------------------------------------------------------ACCTCT--------------------CTGACCTGGCGCTG-TCTC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16045934 23 +  16417988 -------------------------------------------------------CCCTCT--------------------CTGACC-GCCGCTG-TCTC
i saiBol1.JH378155         I 1 C 0
s otoGar3.GL873745           1909070 61 -   2165740 ---CTGG-GCAGCCCAGTCA---ACACCCAACTGTCAAGAAGCACAACATGTGACCTGTCT--------------------CTGACC-T-----------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11753091 51 +  42124431 CCTTTGGCTCGACACCTCCCTCTTCACCC--------------------------CTCTCT--------------------CGGGGG-AAGAGAG-CCC-
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25458769 95 -  25620257 I
e cebCap1.NW_016108158v1      133308 24 +    298490 I

a score=239854.000000
s hg38.chr5_KI270793v1_alt    108762 32 +    126136 ACTGTGGGAGTGTGGGAATG--CTTTTCTGCAGG
s panTro5.chr5             181374998 32 - 181907262 CCTGTGGGAGTGTGGGAATG--CTTTTCTGCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093718 32 - 183735486 CCTGTGGGAGTGTGGGAATG--CTTTTCTGCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187427 32 +    698298 ACTGTGGGAGTGTGGGAATG--CTTTTCTGCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605153 32 - 121039945 CCTGTGGGAGTATGGGAATG--CTTTTCTGCAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561589 32 - 180051392 CCTGTGGGAGTGTGGGAATG--CTTTTCCGCAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181295100 32 - 181584905 CCTGTGGGAGTGTGGGAATG--CTTTTCCGCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300561 32 -   1764207 CCTGTGGGAGTGAGGGAATG--CTTTTCCGCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305629 32 -  16742782 CCTGTGGGAGTGTGGGAATG--CTTTTCTGCAGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90607038 32 -  91010382 CCTGTGGGAGCGTGGGAATG--CTTTTCCGCAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203279 32 -    438239 CCTGGGGGAGTGTGGGAATG--CTTTTCTGCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      233056 32 -    514179 CCTGTGGGAGTGTGGGACTG--CTTTTCCGCAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892214 34 + 204313951 ACTTCGGGAGGGTGGGAATGTGCTTTTCCATCGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16045957 34 +  16417988 ACTTCGGGAGGGTGGGAATGTGCTTTTCCACTGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      133332 34 +    298490 ACTTTGAGAGGGTGGGAATGTACTTTTCCACCGG
i cebCap1.NW_016108158v1   I 24 C 0
s otoGar3.GL873745           1909131 27 -   2165740 TCTGTGCCAGGATGTG---G--CTCTT--ACTGG
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11753142 23 +  42124431 -----AGGGGGCTGGAGTCA--C----CTGCAGG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25458769 95 -  25620257 I

a score=658080.000000
s hg38.chr5_KI270793v1_alt    108794 68 +    126136 AGCTTCAGCCTTGGGGTTCCAGCACCTCCTCCTTAACTGGACAGGG-----TCAAGACCCAGATCCCTGAGCG
s panTro5.chr5             181375030 68 - 181907262 AGCTTCAGCCTTGGGGTTCCAGCACCTCCTCCTTAACTGGACAGGG-----TCAAGACCCAGATCCATGAGCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093750 68 - 183735486 AGCTTCAGCCTTGGGGTTCCAGCACCTTCTCCTTAACTGGACAGGG-----TCAAGACCCAGATCCATGAGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187459 68 +    698298 AGCTTCAGCCTTGGGGTTCCAGCACCTCCTCCTTAACTGGACAGGG-----TCAAGACCCAGATCCCTGAGCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605185 68 - 121039945 AGCTTCAGCCTTGGGGTTCCAGCACCTCCTCCTTAACTGGACAAGG-----TCAAGACCCAGATCCCTGAGCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561621 69 - 180051392 AGCTTCAGCCTTGGGGTTGCAGCACCTCCTCCTTAACTGGACAGGGC----TCAAGACCCAGATCCCTGAGCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181295132 69 - 181584905 AGCTTCAGCCTTGGGGTTGCAGCACCTCCTCCTTAACTGGACAGGGC----TCAAGACCCAGATCCCTGAGCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300593 69 -   1764207 AGCTTCAGCCTTGGGGTTGCAGCACCTCCTCCTTAACTGGACAGGGC----TCAAGACCCAGATCCCTGAGCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305661 69 -  16742782 AGCTTCAGCCTTGGGATTGCAGTACCTCCTCCTTAACTGGACAGGGC----TCAAGACCCAGATCCCTGAGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90607070 69 -  91010382 AGCTTCAGCCTTGGGGTTGCAGTACCTCCTCCTTAACTGGACAGGGC----TCAAGACCCAGATCCCTGAGCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203311 69 -    438239 AGCTTCAGCCTTGGGATTGCAGTATCTCCTCCTTAACTGGACAGGGC----TCAAGACCTAGATCCCTGAGCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      233088 69 -    514179 AGCTTCAGCCTTGGGGTTGCAGCACCTCCTCCTTAACTGGACAGGGC----TCAAGACCCAGATCCCTGAGCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892248 69 + 204313951 CCCTTCAGCCTTGGGATCACAGCACCTCCTCTGTAACTGGACGGTGC----TCAAGACCCATATCCCTGAGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16045991 69 +  16417988 AGCTTCAGCCTTGGGATCACAGCACCTCCTCCGTAACTGGAGGGTGC----TCAAGACCCAGATCCCTGAGAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      133366 69 +    298490 AGCTTCAGCCTTGGGATCGCAGCACCTCCTCCGTAACTGGAGGATGC----TCAAGACCCAGATCCCTGGGTG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25458864 69 -  25620257 AGCTTCGGCCTTGGGATCACAGCACCTCCTCCGTAACTGGACGGTGC----TCAAGACCCAGATCCTTGAGTG
i aotNan1.NW_018503740v1   I 95 C 0
s otoGar3.GL873745           1909158 68 -   2165740 -----TGGCTGTGGGGCTCCTACCTCTCTTCCGTGTGCTGATGCTGCCTGACTGAGACCTAGGTCTCTGACCA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11753165 38 +  42124431 ------AGC-------------------------AACAGGGCAGGAA----TATAGCCTTGGGAACCTGCACG
i canFam3.chr34            C 0 I 14

a score=326647.000000
s hg38.chr5_KI270793v1_alt    108862 37 +    126136 CCAGGTTCCCTGCTCCCGGCCCCAAA-TCTGAGG---CACT-
s panTro5.chr5             181375098 37 - 181907262 CCAGGTTCCCTGCTCCCGGCCCCAAA-TCCGAGG---CACT-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093818 37 - 183735486 CCAGGTTCCCTGCTCCCGGCCCCAAA-TCCGAGG---CACT-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187527 37 +    698298 CCAGGTTCCCTGCTCCCGGCCCCATA-TCCAAGG---CACT-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605253 37 - 121039945 CCAGGTTCCCTGCTCCCAGCCCCAGA-TCCGAGG---CACT-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561690 37 - 180051392 CCAGATTCCCTGCTCTGGGTCCCAAA-TCTGAGG---CACG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181295201 37 - 181584905 CCAGATTCCCTGCTCTGGGTCCCAAA-TCTGAGG---TACC-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300662 37 -   1764207 CCAGATTCCCTGCTCTGGGTCCCAAA-TCTGAGG---CACC-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305730 37 -  16742782 CCAGATTCCCTGCTCTGGGTCCCAAA-TCTGAGG---CACC-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90607139 37 -  91010382 CCAGATTCCCTGCTCTGGGTCCCAAA-TCTGAGG---CACC-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203380 37 -    438239 CCAGATTCCCTGCTCTGGGTCCCAAA-TCTGAGG---CATC-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      233157 37 -    514179 CCAGATTCCCTGCTCTGGGTCCCAAA-TCTGAGT---CACC-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892317 38 + 204313951 CCAGGTTCCCTGCTCCCGGCCCCAAA-CCTGAGG---CACAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16046060 41 +  16417988 CCAGGTTCCCTGCCCCTGGCCCCAAA-CCCGAGGCACCACCG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      133435 38 +    298490 CCAGGTTCCCTGCCCCCGGCCCCAAA-CCCGAGG---CACCG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25458933 38 -  25620257 CCAGGTTCCCTGCTCCCGACCCCAAC-CCCGAGG---CACCG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1909226 38 -   2165740 TGAGATCCCCTGTTCCTGGCCACAGAGTCCTTGT---CACT-
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11753203 14 +  42124431 I

a score=2407267.000000
s hg38.chr5_KI270793v1_alt    108899 279 +    126136 GGGTGCTTCCTTG------TTGTCT-GGGT-GGGTGCAGGAGGTCGTCCTCACCCGACACTTGACTCCCGGACCCCCGCTGTCTT-ACCCAGCGTGTCCCAGGGAGCCTCCGCCA-CTGGGGG-----------------TGTGACACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCCAGGTGCAGCCTT--CCACCGG-----GCACTCAGTG----CCCAGGCTGTGAGGGCAGCTGT-GGGTCACCTTCACCTCCTGGGG-TGAA-------------T------------GGTTTTATTG-CATGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
s panTro5.chr5             181375135 279 - 181907262 GGGTGCTTCCTTG------CTGTCT-GGGT-GGGCGCAGGAGGTCGTCCTCACCCAACACTTGACTCCCGGACCCCCGCTGTCTT-ACCCAGCGTGTCCCAGGGAGCCTCCGCCA-CTGGGGG-----------------TGTGACACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCCAGGTGCAGCCTT--CCACCGG-----GCACTCGGTG----CCCAGGCTGTGAGGGCGGCTGT-GGGTCGTCATCACCTCCTGGGG-TGGA-------------T------------GGTTTTATTG-CATGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183093855 279 - 183735486 GGGTGCTTCCTTG------CTGTCT-GGGT-GGGCGCAGGAGGTCGTCCTCACCCAACACTTGACTCCCGGACCCCCGCTGTCTT-ACCCAGCGTGTCCCAGGGAGCCTCCGCCA-CTGGGGG-----------------TGTGACACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCCAGGTGCAGCCTT--CCACCGG-----GCACTCGGTG----CCCAGGCTGTGAGGGCGGCTGT-GGGTCGTCATCACCTCCTGGGG-TGGA-------------T------------GGTTTTATTG-CATGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187564 278 +    698298 GGGTGCTTCCTTG------CTGTCT--GGT-GGGCGCAGGAGGTCGTCCTCACCCGACACTTGACTCCTGGACCCCCGCTGTCTT-ACCCAGCGTGTCCCAGGGAGCCTCCGCCA-CTGGGGG-----------------TGTGACACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCCAGGTGCAGCCTT--CCACCGG-----GCACTCGGTG----CCCAGGCTGTGAGGGCGGCTGT-GGGTCATCTTCACCTCCTGGGG-TGGA-------------T------------GGTTTTATTG-CATGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605290 280 - 121039945 GGGTGTTTCCTTG------CTGTCT-GGGT-GGGCGCAGGAGGTCGTCCTCACCCGACACTTGACTCCCGGACCCCCGCTGTCTT-ACCCAGTGTGTCCTAGGGAGCCTCTGCCA-CTGGGGG-----------------TGTGACACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCAAGGGGTAGCCTT--CCACCGG-----GCACTTGGTG----CCCAGGCTGTGAGGGTGGCTGTGGGGTCATCTTCAGCTCCTGGGG-TGGA-------------T------------GGTTTTACTG-TATGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179561727 280 - 180051392 AGGTGCCTCCTTG------CTGTCT-GAGTGGGGTGCAGGAGGTTGCCCTAACCTGGCACTCGA-TCCCGGACCCCCGCTATCTA-ACCCAGGGTGTCCCAGGGGGTCTCTGCCA-CTGGGGG-----------------TGTGATACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCAAGGTGCAGCCCT--CTACCAG-----GCACTCGGTG----CCCAGGCTGTGAGGGCAGCTGTGGGGTCATCTTCACCTCCTGGGG-TAGA-------------T------------GGTTTTATTG-CACGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181295238 280 - 181584905 AGGTGCCTCCTTG------CTGTCT-GAGTGGGGTGCAGGAGGTTGCCCTAACCTGGCACTCGA-TCCCGGACCCCCGCTATCTA-ACCCAGGGTGTCCCAGGGGGTCTCTGCCA-CTGGGGG-----------------TGTGATACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCAAGGTGCAGCCCT--CTACCAG-----GCACTCGGTG----CCCAGGCTGTGAGGGCAGCTGTGGGGTCATCTTCACCTCCTGGGG-TGGA-------------T------------GGTTTTATTG-CACGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300699 280 -   1764207 AGGTGCCTCCTTG------CTGTCT-GAGTGGGGTGCAGGAGGTTGCCCTAACCCGGCACTCGA-TCCCGGACCCCCGCTATCTA-ACCCAGGGTGTCCCAGGGGGTCTCTGCCA-CTGGGGG-----------------TGTGATACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCAAGGTGCAGCCCT--CTACCAG-----GCACTCGGTG----CCCAGGCTGTGAGGGCAGCTGTGGGGTCATCTTCACCTCCTGGGG-TGGA-------------T------------GGTTTTATTG-CACGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      305767 276 -  16742782 AGGTGCCTCCTTG----------CT-GAGTGGGGCGCAGGAGGTCGCCCTAACCCGGCACTCGA-TCCCGGACCCCCGCTATCTA-ACCCAGGGTGTCCCAGGGGGTCTCTGCCA-CTGGGGG-----------------TGTGATACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCAAGGTGCAGCCCT--CCACCAG-----GCACTCGGTG----CCCAGGCTGTGAGGGCAGCTGTGGGGTCATCTTCACCTCCTGGGG-TGGA-------------T------------GGTTTTATTG-CACGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90607176 280 -  91010382 AGGTGCCTCCTTG------CTGTCT-GAGTGGGGCGCAGGAGGTCGCCCTAACCCGGCACTCGA-TCCCGGACCCCCGCTGTCTA-ACCCAGGGTGTCCCAGGGAGCCTCTGCTA-CTGGGGG-----------------TGTGATACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCAAGGTGCAGCCCT--CTACCAG-----GCACTCGGTG----CCCAGGCTGTGAGGGCAGCTGTGGGGTCATCTTCACCTCCTGGGG-TGGA-------------T------------GGTTTTATTG-CACGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203417 276 -    438239 AGGTGCCTCCTTG----------CT-GAGTGGGGCGCAGGAGGTCGCCCTAACCCGGCACTCGA-TCCCGGATCTCCGCTATCTA-ACCCAGGGTGTCCCAGGGGGTCTCTGCCA-CTGGGGG-----------------TGTGATACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCAAGGTGCAGCCCT--CCACCAG-----GCACTCGGTA----CCCAGGCTGTGAGGGCAGCTGTGGGGTCATCTTCACCTCCTGGGG-TGGA-------------T------------GGTTTTATTG-CACGTGCTCTGGTCCTGGAGGCAGGAATCCCTCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      233194 280 -    514179 AGGTGCCTCCTTG------CTGTCT-GAGTGGGGCGCAGGAGGTCGCCCTAACCCGGCACTCGA-TCCCGGACCCCCGCTGTCTA-ACCCAGGGTGTCCCAGGGAGCCTCTGCCA-CTGGGGG-----------------TGTGATACTGCCTAGACC----ACCTGCCTAAGCTGTGGATTTCTCCAAGGTGTAGCCCT--CCACCAG-----GCACTCGGTG----CCCAGGCTGTGAGGGCAGCTGTGGGGTCATCTTCACCTCCTGGGG-TGGA-------------T------------GGTTTTATTG-CACGTGCTGTGGTTCTGGAGGCAGGAATCCCTCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892355 262 + 204313951 AGGTGCTTCCTTG------CTGTCTGGGGTGGGGTGCAGGAGGTCA---------------------------CCCCGCTGTCTT-ACCCAGGGTGTCCCAGTGAGCCTCTGCCA-TTGGGGG-----------------TGTGGTGCCGCCTAGACCACCTACCTGCCCAAGCTGTGGATTTCTCCAAGGTGCAGCTGT--CCACCAG-----GCACTGGGTGTCTTCCCAGGCTGCGAGGGTGGCTGTCGGCTCATATTCACCTCCTGGGG-TGGA-------------C------------AG-TTTATTG-CATGGGCTCTGGCCCTGGAGGCAGGAATCCCTCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16046101 257 +  16417988 ACGTGCTTCCTTG------CTGTCTGGGGTGGGGC------TGTCA---------------------------CCCTGCTGTCTT-ACCCAGGGTGTCCCAGCGAGCCTCCGCCA-TTGGGGG-----------------TGTGGTGCTGCCTGGACCACCTACCTGCCCAAGCTGTGGATTTCTCCACGGTGCAGCCGT--CTGCCAG-----GCACTGGGTGTCTTCCCAGGCTGCGAGGATGGCTGTTGGCTCATATGCACCTCCTGGGG-TGGA-------------C------------GGTTTTATTG-CATGGGCCCTGGCCCTGGAGGCAGGAATCCCTCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      133473 263 +    298490 AGGTGCTTCCTTG------CTGTCTGGGGTGGGGCACAGGAGGGCA---------------------------CCCCGCTGTCTT-ACCCAGGGTGTCCCAGCCAGCCTCTGCCA-TTGGGGG-----------------TGTGGTGCTGCCTAGACCACCTACCTGCCCAAGCTGTGGATTTCTCCAAGGTGCAGCTGT--CCGCCAG-----GCACTGGGTGTCTTCCCAGGCTGTGAGGGTGGCTGTTGACTCATATTCATCTCCTGGGG-TGGA-------------C------------AGTTTTATTG-CATGGGCTCTGGCCCTGGAGGCAGGAATCCCTCA
i cebCap1.NW_016108158v1   C 0 I 26
s aotNan1.NW_018503740v1    25458971 263 -  25620257 AGGTGCTTCCTTG------TTGTCTGGGGTGGGGCGCAGGAGGTCA---------------------------CCCCGCTGTCTT-TCCCAGGGTGTCCCAGCGAGCCTCTGCCA-TTGGGGG-----------------TGTGGTGCTGCCTAGACCACCTACCTGCCCAAGCTGTGGATTTCTCCAAGGTGCAGCTGT--CCGCCAG-----GCACTGGGTGTCTTCCCAGGCTGCGAGGGCGGCTGTCGGCTCATACTCACTTCCTGGGG-TGGA-------------C------------AGTTTTATTG-CATGGGCTCTGGCCCTGGAGGCAGGAATCCCTCA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1909264 194 -   2165740 CAAGCCCCCCTCA-------------G--------GCAGGAG-------------------------------CATCTCTGTCTACACCCA------CCCATGGA-TCTCTCCCA----------------------------GACACAGCCTAGCAG----GTCTGGC---GCTGTGT-TTTCCCTGAGTCACA---------------------------TT----CCCAGGCTGA-------------GGGTCCTACTGACTTCCTGGGATTGGA-------------CTTGGAAACTGGAGATTTCATTT-CATGTGCTCTGGCCCCGGGGATGGGAGCCCCA--
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11753217 285 +  42124431 AGGTCCTTTCCTGTCAAGCCTTTCC-GTGC-TGGCGCATGGT-------------------------------CCAGCCTCTCCA-GCCTCAGG-GCTGCGGGGGGCCTGGGACATCTGTGGGCACTGCAGCACCCCCTCCACAGTGCTACCCAGGGC----ACCTGG--GAGCTGTG-----CTCTCAGGTACAGCCGTGGGGGCCGGTGTCTGCCCCAGGTG--TTGCCAGGGCGTGGGGGAAGCCAT-GTGAGGCACTTACCTCCTGGTG-TGAAGAACAGAGGCCTTT------------GGTTTTTCCATCATGTGCTCTGGTCTTAGGACAAGGAGCCTCT--
i canFam3.chr34            I 14 C 0

a score=167355.000000
s hg38.chr5_KI270793v1_alt    109178 32 +    126136 ----ATGCGCACAGCACCT----------------------------ACCCCTTCACCATATCT
s panTro5.chr5             181375414 32 - 181907262 ----ATGCGCACGGCACCT----------------------------ACCCCCTCACCATATCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183094134 32 - 183735486 ----ATGTGCACGGCACCT----------------------------ACCCCCTCACCATATCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187842 32 +    698298 ----ATGCGCACGGCACCT----------------------------ACCCCCTCACCATATCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605570 32 - 121039945 ----ATGCGCATGGCACCT----------------------------ACCCCCTCACCATATCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179562007 31 - 180051392 ----ATGCGCACAGCGCTT----------------------------ACCCCC-CACCATATCT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181295518 31 - 181584905 ----ATGCGCACAGCGCTT----------------------------ACCCCC-CACCATATCT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      300979 31 -   1764207 ----ATGCGCACAGCGCTT----------------------------ACCCCC-CACCATATCT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      306043 31 -  16742782 ----ATGCGCACAGCGCTT----------------------------ACCCCC-CACCATATCT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90607456 31 -  91010382 ----ATGCGCACAGCGCCT----------------------------ACCCCC-CACCATATCT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203693 31 -    438239 ----ATGCGCACAGCGCTT----------------------------ACCCCC-CACCATATCT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      233474 31 -    514179 ----ATGTGCATAGCGCCT----------------------------ACCCCC-CACCATATCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892617 31 + 204313951 ----CTGCACACAGCGCCT----------------------------ACTCGC-CTCTGAGTCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16046358 31 +  16417988 ----CTGCACACAGTGCCT----------------------------ACTCGC-CTCTGAGTCA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25459234 31 -  25620257 ----CTGCACATAGCGCCT----------------------------ACTGGC-CTCTGAGTCA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1909458 21 -   2165740 ------------GTGACAT----------------------------ATCC---AGCCAGACCT
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11753502 63 +  42124431 GGTGCTGAGCCTCACCCCTTTCCTGCTCCTTGCATGGGTCCCTGGGCACTGCC-CATCCTGCCC
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      133736 26 +    298490 I

a score=4501615.000000
s hg38.chr5_KI270793v1_alt    109210 412 +    126136  
s panTro5.chr5             181375446 412 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183094166 412 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      187874 413 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605602 394 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179562038 413 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181295549 413 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301010 413 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      306074 445 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90607487 413 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      203724 509 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      233505 413 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203892648 424 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16046389 413 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      133762 413 +    298490  
i cebCap1.NW_016108158v1   I 26 C 0
s aotNan1.NW_018503740v1    25459265 411 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1909479 387 -   2165740  
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11753565 392 +  42124431  
i canFam3.chr34            C 0 I 1564

a score=2289598.000000
s hg38.chr5_KI270793v1_alt    109622 250 +    126136 -GGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCCGCC----AGAGGCTGAGAGAGAGACAGGGAT-GGTGAGTCACTCTTGGCCGCCAGCCCCCCCAGCCCACTCCCTGCCACCCCAGGAG---CTCCCCGCCT-----CTGGGCGTGTGTGGCGCTCCCTGTGACCACACAGGCTTGTTAAGATGCCTGTCTGGGCCCAA-------GCTCCAGCACCCAACCAGCCTCATG-TCTA---CTGCAGAAATGGCTGAGC
s panTro5.chr5             181375858 251 - 181907262 GGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCCGCC----AGAGGCTCAGAGAGAGACAGGGAT-GGTGAGTCACTCTTGGCCACCAGCCCCCCCAACCCACTCCCTGCCACCCCAGGAA---CTCCCCGCCT-----CTGGGCGTGTGTGGCGCTCCCTGTGACCACACAGGCTTGTGAAGATGCCTGTCTGGGCTCAA-------GCTCCAGCACCTAACCAGCCTCATG-TCTA---CTGCAGAAATGGCTGAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183094578 251 - 183735486 GGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCTGCC----AGAGGCTCAGAGAGAGACAGGGAT-GGTGAGTCACTCTTGGCCACCAGCCCCCCCAACCCACTCCCTGCCACCCCAGGAA---CTCCCCGCCT-----CTGGGCGTGTGTGGCGCTCCCTGTGACCACACAGGCTTGTGAAGATGCCTGTCTGGGCTCAA-------GCTCCAGCACCTAACCAGCCTCATG-TCTA---CTGCAGAAATGGCTGAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188287 250 +    698298 GGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCCGCC----AGAGGCTCAGAGAGAGACAGGGAT-GGTGAGTCACTCTTGGCCGCCAGCCCCCCCAACCCACTCCCTGCCACCCCAGGAG---CT-CCCGCCT-----CTGGGCGTGTGTGGCGCTCCCTGTGACCACACAGGCTTGTTAAGATGCCTGTCTCGGCCCAA-------GCTCCAGCACCTAACCAGCCTCATG-TCTA---CTGCAGAAATGGCTGAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120605996 251 - 121039945 GGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCCACC----AGAGGCTCAGAGAGAGACAGGGAT-GGTGAGTCACTCTTGGCTGCCAGCCCCTCCAACCCCCTCCCTGCCACCCCGGGAG---CTCCCCGCCT-----CTGGGCGTGTGTGGCGCTCCCCGTGACCACACAGGCTTGGGAAGATGCCTGTCTGGGCCCAA-------GCTCCAGCACCTAACTAGCCTCATG-TCTA---CTGCAGAAACGGCTGAGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179562451 251 - 180051392 TGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCTGCC----AGAGGCCCAGAGAGAGAGAGGGAT-TGTGAGTCACTCTTGGCTGCCAGCTCCCCCAACCCCCTCCCTGCCACCCTGGGAG---CTCCCCGCCT-----CTGGGCGTGTGTGGCGCTCCCTGTGACCACACAGGCTTGTTGAGATGCCTGTCTGAGCCCAA-------GCTCCAGCACCTAAGCAGTCTCATG-TCTA---CCGCAGAAATGGCTGAAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181295962 251 - 181584905 TGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCTGCC----AGAGGCCCAGAGAGAGAGAGGGAT-GGTGAGTCACTCTTGGCTGCCAGCTCCCCCAACCCCCTCCCTGCCACCCTGGGAG---CTCCCCGCCT-----CTGGGCGTGTGTGGCGCTCCCTGTGACCACACAGGCTTGTTGAGATGCCTGTCTGAGCCCAA-------GCTCCAGCACCTAAGCAGTCTCATG-TCTA---CCGCAGAAATGGCTGAAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301423 251 -   1764207 TGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCTGCC----AGAGGCCCAGAGAGAGAGAGGGAT-GGTGAGTCACTCTTGGCTGCCAGCTCCCCCAACCCCCTCCCTGCCACCCTGGGAG---CTCCCCGCCT-----CTGGGCGTGTGTGGCGTTCCCTGTGACCACACAGGCTTGTTGAGATGCCTGTCTGAGCCCAA-------GCTCCAGCACCTAAGCAGTCTCATG-TCTA---CCGCAGAAATGGCTGAAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      306519 250 -  16742782 TGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCTGCC----AGAGGCCCAGAGAGAGAGAGGGAT-GGTGAGTCACTCTTGGCTGCCAGC-CCCCCAACCCCCTCCCTGCCACCCTGGGAG---CTCCCCGCCT-----CTGGGCGTGTGTGGCGCTCCCTGTGACCACACAGGCTTGTTGAGATGCCTGTCTGAGCCCAA-------GCTCCAGCACCTAAGCAGTCTCATG-TCTA---CCGCAGAAATGGATGAAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90607900 251 -  91010382 TGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCTGCC----AGAGGCCCAGAGAGAGAGAGGGAT-GGTGAGTCACTCTTGGCTGCCAGCCCCCCCAACCCCCTCCCTGCCACCCTGGGAG---CTCCCCGCCT-----CTGGGCGTGTGTGGCGCTCCCTGTGACCACACAGGCTTGTTGAGATGCCTGTCTGAGCCCAA-------GCTCCAGCACCTAAGCAGTCTCATG-TCTA---CCGCAGAAATGGCTGAAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204233 251 -    438239 TGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCTGCC----AGAGGCCCAGAGAGAGAGAGGGAT-GGTGAGTCACTCTTGGCTGCCAGCCCCCCCAACCCCCTCCCTGCCACCCTGGGAG---CTCCCCGCCT-----CTGGGCGTGTGTGGCGCTCCCTGTGACCACACAGGCTTGTTGAGATGCCTGTCTGAGCCCAA-------GCTCCAGCACCTAAGCAGTCTCATG-TCTA---CCGCAGAAATGGCTGAAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      233918 251 -    514179 TGGGG-CAGGGAAGGAAC-CACCAGGGCTCCCTGTGGGTACCTGGCAGCTCTGCC----AGAGGCCCAGAGAGAGAGAGGGAT-GGTGAGTCACTCTTGGCCGCCAGCCCCCCCAACCCCCTCCCTGCCACCCCGGGAG---CTCCCCGCCT-----CTGGGCGTGTGTGGCGCTCCCTGTGACCACACAGGCTTATTAAGATGCCTGTCTGAGCCCAA-------GCTCCAGCACCTAACCAGTCTCATG-TCTA---CTGCAGAAATGGCTGAAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203893072 243 + 204313951 TGGGG-CAGGGAAGGAGC-CATCAGGGCTCCCTGTGGGTGCCTGTCAGCTCCCTCCAAAAGAGGCCCAGAGAGAG--AGGGAC-GGTGAGTCACTCTTGGCTGCCACCTCCCCC-------------CTCCGCAAGGAG---CTCCCAGCCT-----CAGGGTGTGTGCGGCGCTCCCTGTGACTACACAGGCTTGTTCGGATGCCTGTCTGGGCCCAT-------GCTCTAGCACCTAGCCAGCCTGACG-TCTACTTCTGCAGGGACAGCTGAGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16046802 243 +  16417988 GGGGG-CAGGGAAGGAGC-CATCAGGGCTCCCTGTGGGTGCCTGTCAGCTCCCTCCACAAGAGGCCCAGAGAGAG--AGGGAT-GGTGAGTCACTCTTGGCTGCCACCTGCCCC-------------CCTCCCAGGGAG---CTCCCAGCCT-----ATGGGCGTGTGCGGCGCTCCCTGTGACCACACAGGCTTGTTAAGATGCCTGTCTGGACCCAT-------GCTGTAGCACCTAGCCAGCCTGACG-TCTACTTCTGCAGGGACGGCTGAGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      134175 246 +    298490 GGGGG-CAGGGAAGGGGC-CATCAGGGCTCCCCAC-GGTGCCTGGCAGCTCCCTCTATAAGAGGCCCAGAGAGAG--AGGGAT-GGTGAGTCACTCTTGGCTGCCACCCGCCCC-------------GCTCCCAGGGAG---CTCCCAGCCCAGCCGCTGGGCGTATGCGGCGCTCCCTGTGACCACACAGGCTTGTTAAGATGCCTGTCTGGGCCCAT-------GCTCTAGCG-CTAACCAGCCTGACG-TCTACTTCTGCAGGGACGGCTGAGA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25459676 242 -  25620257 GGGGG-CAGGGAAGGAGC-CATCAGGGCTCCCTGTGGGTGCCTGTCAGCTCCCTCCGCAGGAGGCCCAGAGAGAG--AGGGAT-GGTGAGTCACTCTTGGCTGCCACCC-CCCC-------------GCCCCCAGGGAG---CTCCCAGCCT-----CAAGGCGTGTGCGGCGCTCCCTGTGACCACACAGGCTTCTTAAGATGCCTGTCTGGGCCCAT-------GCTCTAGCACCTGGCCAGCCTGACG-TCTACTTCTGCAGGGATGGCTGAGA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1909866 234 -   2165740 CAGGGTCAGGGAGCGAGTGGACCAGGGCTCCCTGTGGG----TGGCA-CCGTGTC----AGAGAACCAGG-------AGAAATCTCCAAGTCCCTTTGTGAGG-------CTCTAACCACCAGCACAGCACACTGTGGGCCTCTCCTCACCT-----ATAGCTCTGG---------CCTGTGAC------AGTTCTCGGAAACGCATCTCAGGGCATGACTCTGCTGCTCCAGCACTGGCTTATCCTCCTGCTTTATTTCTGCGTATATCTGTGAGC
i otoGar3.GL873745         C 0 I 46
e canFam3.chr34             11753957 1564 +  42124431 I

a score=248087.000000
s hg38.chr5_KI270793v1_alt    109872 29 +    126136 TCTCCCAGCGTGGCCACCCCCACTGCCGG
s panTro5.chr5             181376109 29 - 181907262 TCTCCCAGTGTGGCCACCCCCACTGCCGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183094829 29 - 183735486 TCTCCCAGTGTGGCCACCCCCACTGCCGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188537 29 +    698298 TCTCCCAGCGTGGCCACCCCCACTGCTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606247 29 - 121039945 TCTCCCAGCGTGGCCACCCCCACCGCCGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179562702 29 - 180051392 TCCCCTAGCGTGGCCGCCCCTACCGCCGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296213 29 - 181584905 TCCCCTAGCGTGGCCGCCCCTACCGCCGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301674 29 -   1764207 TCCCCTAGCGTGGCCGCCCCTACCGCCGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      306769 29 -  16742782 TCCCCCAGCGTGGCCGCCCCTACCGCCGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608151 29 -  91010382 TCCCCCAGTGTGGCCGCCCCTACCGCCGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204484 29 -    438239 TCCCCCAGCGTGGCCGCCCCTACCGCCGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234169 29 -    514179 TCTCCCAGCGTGGCCACCCCTACCGCCGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203893315 29 + 204313951 TCCCCTAGAGTGGCTGCCCCCACCAACAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16047045 29 +  16417988 TCCCCTAAAGTGGCTGTCCCCACCAACAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      134421 29 +    298490 TCCCCTAGAGTGGCTGCCCCCACCAACAG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25459918 26 -  25620257 TCCCCTAGAGTGGCTGCCCCCAC---CAG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1910100 46 -   2165740 I
e canFam3.chr34             11753957 1564 +  42124431 I

a score=1590789.000000
s hg38.chr5_KI270793v1_alt    109901 156 +    126136 CTTCTCCAGG-AGCCAGGGGCTGCACTGGGGCATGTTTAGAGTTGGGGTTCCCATCCTGC-----ACATCATCTGCCCAGCGTCTGGGCTGAGTCCCACAACCAGGAGTCTCAGTGCACGATGAAGCCACCAAGGCTTTCCTCACCCACCCTTGAGAC--------------AAGA
s panTro5.chr5             181376138 156 - 181907262 CTTCTCCAGG-AGCCAGAGGCTGCACTGGGGCATGTTTAGAGTTGGGGTTCCCATCCTGC-----ACATCATCTGCCCAGCGTCTGGGCTGAGTCCCACACCCAGGAGTCTCAGTGCACGATGAAGCCACCAAGGCTTTCCTCACCCACCCATGAGAC--------------AAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183094858 156 - 183735486 CTTCTCCAGG-AGCCAGAGGCTGCACTGGGGCATGTTTAGAGTTGGGGTTCCCATCCTGC-----ACATCATCTGCCCAGCGTCTGGGCTGAGTCCCACACCCAGGAGTCTCAGTGCACGATGAAGCCACCAAGGCTTTCCTCACCCACCCATGAGAC--------------AAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188566 156 +    698298 CTTCTCCAGG-AGCCAGGGGCTGCACTGGGGCATGTTTAGAGTTGGGGTTCCCATCCTGC-----ACATCATCTGCCCAGCGTCTGGGCTGAGTCCCACACCCAGGAGTCTCAGTGCACGATGAAGCCACCAAGGCTTTCCTCACCCACCCTTGAGAC--------------AAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606276 156 - 121039945 CTTCTCCAGG-GGCCAGGGGCTGCACTGGGGCATGTTTAGAGTTGGTGTTCCCATCCTGC-----ACATCATCTGCCCAGCGTCTGGACTGAGTCCCACACCTGGGAGTCTCAGTGCACAATGAAGCCGCCAAGGCTCTCCTCACCCACCCTCGAGAC--------------AAGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179562731 156 - 180051392 CTTCTCCAGG-AGCCAGGGGCTGCACTGGGGCATGCTTAGAGTTGGGGTTCCCATACTGC-----ACATCATCTGCCCAGCATCTGGGCCGAGTCCCACACCCAGGAGTCTCAGTGCACGATGAAGCTGCCAAGGCTCTCCCCATCCACCCTTGAGAC--------------AAGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296242 156 - 181584905 CTTCTCCAGG-AGCCAGGGGCTGCACTGGGGCATGCTTAGAGTTGGGGTTCCCATCCTGC-----ACATCATCTGCCCAGCATCTGGGCCGAGTCCCACACCCAGGAGTCTCAGTGCACGATGAAGCTGCCAAGGCTCTCCCCATCCACCCTTGAGAC--------------AAGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301703 156 -   1764207 CTTCTCCAGG-AGCCAGGGGCTGCACTGGGGCATGCTTAGAGTTGGGTTTCCCATCCTGC-----ACATCATCTGCCCAGCATCTGGGCCGAGTCCCACACCCAGGAGTCTCAGTGCACGATGAAGCTGCCAAGGCTCTCCCCATCCACCCTTGAGAC--------------AAGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      306798 156 -  16742782 CTTCTCCAGG-AGCCAGGGGCTGCACTGGGGCACGCTTAGAGTTGGGGTTCCCATCCTGC-----ACATCATCTGCCCAGCATCTGGGCTGAGTCCCACACCCAGGAGTCTCAGTGCACGATGAAGCTGCCAAGGCTCTCCCCATCCACCCTTGAGAC--------------AAGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608180 156 -  91010382 CTTCTCCAGG-AGCCAGGGGCTGCACTGGGGCATGCTTAGAGCTGGGGTTCCCATCCTGC-----ACATCATCTGCCCAGCGTCTGGGCCGAGTCCCACACCCAGGAGTCTCAGTGCACGATGAAGCTGCCAAGGCTCTCTCCATCTACCCTTGAGAC--------------AAGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204513 156 -    438239 CTTCTCCAGG-AGCCAGGGGCTGCACTGGGGCATGCTTAGAGTTGGGGTTCCCATCCTGC-----ACATCATCTGCCCAGCGTCTGGGCCGAGTCCCACACCCAGGAGTCTCAGTGCACGATGAAGCTGCCAAGGCTCTCCCCATCCACCCTTGAGAC--------------AAGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234198 156 -    514179 CTTCTCCAGG-AGCCAGGGGCTGCACTGGGGCATGCTTAGAGTTGGGGTTCCCATCCTGC-----ACATCATCTGCCCAGCGTCTGGGCCGAGTCCCACACCCAGGAGTCTCAGTGCACGATGAAGCTGCCAAGGCTCTCCCCATCCACCCTTGAGAC--------------AAGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203893344 156 + 204313951 CTTCCCCAGG-AGCCATGGGCTGCCCTGAGGAATGTTTAGAGTTGGGGTTCCCACCCTGC-----ACATCATCTGCCCAGTGTCTGGGCTGAGTCCCACACCCAGGAGTCTCAGTGCATGATGAAGCCACCAAGGCTCTCCCCACCCACCCTTGAGAC--------------AAGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16047074 154 +  16417988 CTTCCCCAGG-AGCCATAGGTTGCCCTGGGGAATATTTAGAGTTGGGGTTCCCACCCTGC-----ACATCATCTGCCCAGTGTCTGGGCTGAGTCCCACACCCAGGAGTCTCTGTGCACGATGAAGCCACCAAGGCTCT--CCACCCACCCTTGAGAC--------------AAGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      134450 156 +    298490 CTTCCCCAGG-AGCCATGGGCTGCCCTGGGGAATGTTTATAGTTGGGGTTCCCACCCTGC-----ACATCATCTGCCCAGTGTCTGGGCTGAGTCCCACACCCAAGAGTCTCCTTGCACGATGAAGCCACCAAGGCTCTCCCCACCCACCCTTGAGAC--------------AAGC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25459944 146 -  25620257 CTTCCCCAGG-AGCCA----------TGGGGAATGTTTAGAGCTGGGGTTCCCACCCTGC-----ACATCATCTGCCCAGTGTCTGGGCTGAGTTCAGTACCCAGGAGTCTCAGTGCACGATGAAGCCACCAAGGATCTCCCCACTCACCCTTGAGAC--------------AAGC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1910146 145 -   2165740 CCACCCCAGACAGCCAAG-------CTGGGGCAC-TTTAAAGCTGAGTGTCCTGTCTTGCCCCATGCATCATCC-CTCAGTTTAGAGG----------------GGAGCCTCCATGCACAATGAAG-----AAGGCTTCCCTGGCCTGCTGGGGACACTTGCAGGAGTTAATAAG-
i otoGar3.GL873745         I 46 C 0
e canFam3.chr34             11753957 1564 +  42124431 I

a score=123139.000000
s hg38.chr5_KI270793v1_alt    110057 16 +    126136 --------GTCT-----------CAGGATACCAGG
s panTro5.chr5             181376294 16 - 181907262 --------GTCT-----------CAGGATACCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095014 16 - 183735486 --------GTCT-----------CAGGATACCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188722 16 +    698298 --------GTCT-----------CAGGATACCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606432 16 - 121039945 --------GTCT-----------TGGGATACCAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179562887 16 - 180051392 --------GTCT-----------TGGGATACCAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296398 16 - 181584905 --------GTCT-----------TGGGATACCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301859 16 -   1764207 --------GTCT-----------TGGGATACCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      306954 16 -  16742782 --------GTCT-----------TGGGATACcagg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608336 16 -  91010382 --------GTCT-----------TGGGATGCCAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204669 16 -    438239 --------GTCT-----------TGGGATACCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234354 16 -    514179 --------GTCT-----------TGGGGTATCAGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203893500 16 + 204313951 --------CTCT-----------CAGGGTACCATG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16047228 16 +  16417988 --------ATCT-----------CAGGGTACCAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      134606 16 +    298490 --------Atct-----------cagggtaccagg
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1910291 35 -   2165740 GCCCCATGGCCTCCACTCTGGGATGGGGCCCTGGG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25460090  0 -  25620257 C
e canFam3.chr34             11753957 1564 +  42124431 I

a score=6815.000000
s hg38.chr5_KI270793v1_alt    110073 2 +    126136 -TG
s panTro5.chr5             181376310 2 - 181907262 -TG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095030 2 - 183735486 -TG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188738 2 +    698298 -TG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606448 2 - 121039945 -TG
i nomLeu3.chr6             C 0 I 45
s rheMac8.chr6             179562903 2 - 180051392 -TG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296414 2 - 181584905 -TG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301875 2 -   1764207 -TG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      306970 2 -  16742782 -tg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608352 2 -  91010382 -TG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204685 2 -    438239 -TG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234370 2 -    514179 -TG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16047244 2 +  16417988 -TC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      134622 2 +    298490 -tc
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1910326 2 -   2165740 TT-
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25460090 0 -  25620257 C
e calJac3.chr2             203893516 0 + 204313951 C
e canFam3.chr34             11753957 1564 +  42124431 I

a score=123146.000000
s hg38.chr5_KI270793v1_alt    110075 13 +    126136 TCAGGGTGCCAGG
s panTro5.chr5             181376312 13 - 181907262 TCAGGGTGCCAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095032 13 - 183735486 TCAGGGTGCCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188740 13 +    698298 TCAGGGTGCCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606495 13 - 121039945 TCAGGGTGCCAGG
i nomLeu3.chr6             I 45 C 0
s rheMac8.chr6             179562905 13 - 180051392 TCAGGGTGCCAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296416 13 - 181584905 TCAGGGTGCCAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301877 13 -   1764207 TCAGGGTGCCAGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      306972 13 -  16742782 tcagggtgccagg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608354 13 -  91010382 TCAGGGTGCCAGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204687 13 -    438239 TCAGGGTGCCAGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234372 13 -    514179 TCAGGGTGCCAGG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16047246 13 +  16417988 TCAGGGCACCAGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      134624 13 +    298490 tcagggcaccagg
i cebCap1.NW_016108158v1   C 0 I 1
s otoGar3.GL873745           1910328 13 -   2165740 TCAGGGTGCCATG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25460090  0 -  25620257 C
e calJac3.chr2             203893516  0 + 204313951 C
e canFam3.chr34             11753957 1564 +  42124431 I

a score=145665.000000
s hg38.chr5_KI270793v1_alt    110088  47 +    126136 -TGTTGGCGTGCCAGGTTTCTGGGTACCAGGTGTTGGGGTA-----------------------------------------------------------------------------------------------CCAGGTC
s panTro5.chr5             181376325  47 - 181907262 -TGTTGGCGTGCCAGGTTTCTGGGTACCAGGTGTTGGGGTA-----------------------------------------------------------------------------------------------CCAGGTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095045  47 - 183735486 -TGTTGGCGTGCCAGGTTTCTGGGTACCAGGTGTTGGGGTA-----------------------------------------------------------------------------------------------CCAGGTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188753  47 +    698298 -TGTTGGCGTGCCAGGTTTCTGGGTACCAGGTGTTGGGGTA-----------------------------------------------------------------------------------------------CCAGGTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606508  47 - 121039945 -TCGTGAAGTGCCATATCTCAGGGTGCTAGATCTTGGGGTA-----------------------------------------------------------------------------------------------TCAGGTC
i nomLeu3.chr6             C 0 T 105
s rheMac8.chr6             179562918  40 - 180051392 -TGTTGGGGTGCCAGGTTTCTGGGTACCAGGTGTTGGGGTA------------------------------------------------------------------------------------------------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296429  40 - 181584905 -TGTTGGGGTGCCAGGTTTCTGGGTACCAGGTGTTGGGGTA------------------------------------------------------------------------------------------------------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301890  40 -   1764207 -TGTTGGGCTGCCAGGTTTCTGGGCACCAGGTGTTGGGGTA------------------------------------------------------------------------------------------------------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      306985 135 -  16742782 -tgttggggtgccaggtttctgggtaccaggtgttggggtaccaggtctcagggtaccaggtcttggtgccaggtctcagggtgccaggtcatgaaatgccatatctcagggtgctagatcttggggtatcacgtc-------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608367  20 -  91010382 -TGTTGGGATACCAGGTTTCT--------------------------------------------------------------------------------------------------------------------------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204700  40 -    438239 -TGTTGGGGTGCCAGGTTTCTGGGTACCAGGTGTTGGGGTG------------------------------------------------------------------------------------------------------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234385  40 -    514179 -TGTTGGGGTGCCAGGTTTCTGGGTACCAGGTGTTAGGGTA------------------------------------------------------------------------------------------------------
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1910341  47 -   2165740 TCTTGGGGGTGCCAGGCTTCAGGGTGC-AGGTTTTGGAGTT-----------------------------------------------------------------------------------------------CCAGTTC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25460090   0 -  25620257 C
e cebCap1.NW_016108158v1      134637   1 +    298490 I
e saiBol1.JH378155          16047259   0 +  16417988 C
e calJac3.chr2             203893516   0 + 204313951 C
e canFam3.chr34             11753957 1564 +  42124431 I

a score=31840.000000
s hg38.chr5_KI270793v1_alt    110135 18 +    126136 TCAGGGTGCCAGGTCTCA
s panTro5.chr5             181376372 18 - 181907262 TCAGGATGCCAGATCTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095092 18 - 183735486 TCAGGATGCCAGATCTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188800 18 +    698298 TCAGGGTGCCAGGTCTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606450 18 - 121039945 TCTGGGTGCCAGGTCTCA
i nomLeu3.chr6             T 105 C 0
s cerAty1.NW_012009470v1      307120 18 -  16742782 tcagggtgccaggtctca
i cerAty1.NW_012009470v1   C 0 C 0
s manLeu1.NW_012110441v1      204740 10 -    438239 --------CCAGGTCTCA
i manLeu1.NW_012110441v1   C 0 C 0
s otoGar3.GL873745           1910388 18 -   2165740 TTAGGGTACCATGTCTCA
i otoGar3.GL873745         C 0 I 101
e aotNan1.NW_018503740v1    25460090  0 -  25620257 C
e cebCap1.NW_016108158v1      134637  1 +    298490 I
e saiBol1.JH378155          16047259  0 +  16417988 C
e calJac3.chr2             203893516  0 + 204313951 C
e canFam3.chr34             11753957 1564 +  42124431 I
e chlSab2.chr4              90608387  0 -  91010382 C
e colAng1.NW_012118799v1      234425  0 -    514179 C
e macNem1.NW_012012389v1      301930  0 -   1764207 C
e macFas5.chr6             181296469  0 - 181584905 C
e rheMac8.chr6             179562958  0 - 180051392 C

a score=211408.000000
s hg38.chr5_KI270793v1_alt    110153 55 +    126136 GGATGCCAGATCTCCAAGTGCCAGGCCTCAGGGTGCCCGGTCGCGAAGTGCCATA
s panTro5.chr5             181376390 55 - 181907262 AAGTGCCAGGCCTCAGGGTGCCAGGCCTCAGGGTGCCCAGTCGCGAAGTGCCATA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095110 55 - 183735486 AAGTGCCAGGCCTCAGGGTGCCAGGCCTCAGGGTGCCCGGTCACGAAGTGCCATA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188818 55 +    698298 GGATGCCAGATCTCCAAGTGCCAGGCCTCAGGGTGCCTGGTCGCAAAGTGCCATA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606468 55 - 121039945 GGTTGCCAGATCTCCAAGTGCCAGGCCTCAGGGTGCCAGGTCGTGAAGTGCCATA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179562958 35 - 180051392 --------------------CCAGGTCTCAGGGTGCCAGGTCATGAAGTGCCATA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296469 35 - 181584905 --------------------CCAGGTCTCAGGGTGCCAGGTCATGAAGTGCCATA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301930 35 -   1764207 --------------------CCAGGTCTCAGGGTGCCAGGTCATGAAGTGCCATA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      307138 53 -  16742782 gggtaccaggtctt--ggtgccaggtctcagggtgccaggtcatgaaatgccata
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608387 53 -  91010382 GGGTACCAGGTCTT--GGTGCCAGGTCTCAGGGTGCCAGGTCATGAAGTGCCATA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204750 53 -    438239 GGGTACCAGGTCTT--GGTGCCAGGTCTCAGGGTGCCAGGTCATGAAGTGCCATA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234425 35 -    514179 --------------------CCAGGTCGCAGGGTGCCAGGTCATGAAGTGCCATA
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1910507 54 -   2165740 GGATGCCAGATTTCAGGGGTTCAGGCTTT-GGGTGCCTTGTTTCTGGGTGCCAAG
i otoGar3.GL873745         I 101 C 0
e aotNan1.NW_018503740v1    25460090  0 -  25620257 C
e cebCap1.NW_016108158v1      134637  1 +    298490 I
e saiBol1.JH378155          16047259  0 +  16417988 C
e calJac3.chr2             203893516  0 + 204313951 C
e canFam3.chr34             11753957 1564 +  42124431 I

a score=112968.000000
s hg38.chr5_KI270793v1_alt    110208 14 +    126136 TCTCAGGGTGCTAG
s panTro5.chr5             181376445 14 - 181907262 TCTCAGGGTGCTAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095165 14 - 183735486 TCTCAGGGTGCTAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188873 14 +    698298 TCTCAGGGTGCTAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606523 14 - 121039945 TCTCAGGGTGCTAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179562993 14 - 180051392 TCTCAGGGTGCTAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296504 14 - 181584905 TCTCAGGGTGCTAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301965 14 -   1764207 TCTCAGGGTGCTAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      307191 14 -  16742782 tctcagggtgctag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608440 14 -  91010382 TCTCAGGGTGCTAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204803 14 -    438239 TCTCAGGGTGCTAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234460 14 -    514179 TCTCAGGGTGCTAG
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16047259 14 +  16417988 ACTCAGGGTGCCAG
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1910561 14 -   2165740 GCTCAGGGTGCTAT
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25460090  0 -  25620257 C
e cebCap1.NW_016108158v1      134637  1 +    298490 I
e calJac3.chr2             203893516  0 + 204313951 C
e canFam3.chr34             11753957 1564 +  42124431 I

a score=6392.000000
s hg38.chr5_KI270793v1_alt    110222 1 +    126136 A
s panTro5.chr5             181376459 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095179 1 - 183735486 A
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188887 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606537 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563007 1 - 180051392 A
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296518 1 - 181584905 A
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301979 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      307205 1 -  16742782 a
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608454 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204817 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234474 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16047273 1 +  16417988 G
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25460090 1 -  25620257 A
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1910575 1 -   2165740 G
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      134637 1 +    298490 I
e calJac3.chr2             203893516 0 + 204313951 C
e canFam3.chr34             11753957 1564 +  42124431 I

a score=104298.000000
s hg38.chr5_KI270793v1_alt    110223 16 +    126136 TCTCAGGGTATCAGGT
s panTro5.chr5             181376460 16 - 181907262 TCTCGGGGTATCAGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095180 16 - 183735486 TCTCGGGGTATCAGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188888 16 +    698298 TCTCAGGGTATCAGGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606538 16 - 121039945 TCTTGGGGTATCAGGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563008 16 - 180051392 TCTTGGGGTATCACGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296519 16 - 181584905 TCTTGGGGTATCACGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301980 16 -   1764207 TTTTGGGGTATCACGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      307206 16 -  16742782 tcttggggtatcacgt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608455 16 -  91010382 TCTTGGGGTATCACGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204818 16 -    438239 TCTTGGGGTATCACGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234475 11 -    514179 TCTCGGGGTAT-----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203893516 16 + 204313951 TCTCAGGCCACCAGGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16047274 16 +  16417988 TCTCAGGGAACCAGGA
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25460091 16 -  25620257 TCTCAGGGCACCAGGC
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1910576 16 -   2165740 TCTCAAGGTGAAATTT
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      134637  1 +    298490 I
e canFam3.chr34             11753957 1564 +  42124431 I

a score=382312.000000
s hg38.chr5_KI270793v1_alt    110239 35 +    126136 CTCAGGGTGCCAGGTCTCAGGGTACCAGGTCCTGG
s panTro5.chr5             181376476 35 - 181907262 CTCAGGGTGCCAGGTCTCAGGGTACCAGGTCCTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095196 35 - 183735486 CTCAGGGTGCCAGGTCTCAGGGTACCAGGTCCTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188904 35 +    698298 CTCAGGGTGCCAGGTCTCAGGGTACCAGGTCCTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606554 35 - 121039945 CTCAGGGTGCCAGGTCTCAGGGTGCCAGGTCTCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563024 35 - 180051392 CTCAGGGTGCCAGGTCTCAGGGTACCAGGTCCTGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296535 35 - 181584905 CTCAGGGTGCCAGGTCTCAGGGTACCAGGTCCTGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      301996 35 -   1764207 CTCAGGGTGCCAGGTCTCAGGGTACCAGGTCCTGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      307222 35 -  16742782 ctcagggtgccaggtctcaggGTACCAGCTCCTGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608471 35 -  91010382 CTCAGGGTGCCAGGTCTCAGGGTACCAGGTCCTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204834 35 -    438239 CTCAGGGTGCCAGGTCTCAGGGTACCAGGTCCTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234486 25 -    514179 ----------CAGGTCTCAGGGTACCAGGTCCTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203893532 35 + 204313951 CTCAGGGTGCCAGCTCTCAGGGAACCAGGTCCTAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16047290 35 +  16417988 CTCAGGGTGCCAGGTCTCAGGGAACCAGGTCCTAG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      134638 35 +    298490 ctcagggtaccaggtctcagagaaccaggtcctag
i cebCap1.NW_016108158v1   I 1 C 0
s aotNan1.NW_018503740v1    25460107 35 -  25620257 CTCAGGGCGCCAGGTCTCAGGGAACCAGGTCTTAG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1910592 35 -   2165740 TTGGGGGTGCCGGGTCTCAGGGTACCATATCTCAG
i otoGar3.GL873745         C 0 I 407
e canFam3.chr34             11753957 1564 +  42124431 I

a score=633752.000000
s hg38.chr5_KI270793v1_alt    110274 57 +    126136 GATGCCAGACTCCACCCTCCCCCAAATCATG----------CACTCACCCCAGCTTCATCCCTTCAC
s panTro5.chr5             181376511 57 - 181907262 GGTGCCAGACTCCACCCTCCCCCAAATCATG----------CACTCACCCCAGCTTCATCCCTTCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095231 57 - 183735486 GGTGCCAGACTCCACCCTCCCCCAAATCATG----------CGCTCACCCCAGCTTCATCCCTTCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188939 57 +    698298 GATGCCAGACTCCACCCTCCCCCAAATCATG----------CACTCACCCCAGCTTCATCCCTTCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606589 57 - 121039945 GGTGCCAGACTCCACCCTCCCCCAAATCATG----------CACTCACCGCAGCTTCATCCCTTCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563059 57 - 180051392 GGTGCCAGACTCCACCCTCCCCCAAGTCATG----------CACTCACCCCAGCTTCGTCCCTTCAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296570 57 - 181584905 GGTGCCAGACTCCACCCTCCCCCAAGTCATG----------CACTCACCCCAGCTTCATCCCTTCAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      302031 57 -   1764207 GGTGCCAGACTCCACCCTCCCCCAAGTCATG----------CACTCACCCCAGCTTCATCCCTTCAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      307257 57 -  16742782 GGTGCCAGACTCCACCCTCCCCCAAGTCATA----------CACTCACCCCAGCTTCATCCCTTCAT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608506 57 -  91010382 GGTGCCAGACTCCACCCTCCCCCAAGTCATG----------CACTCACCCCAGCTTCATCCCTTCAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204869 57 -    438239 GGTGCCAGACTCCACCCTCCCCCAAGTCATG----------CGCTCACCCCAGCTTCATCCCTTCAT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234511 57 -    514179 GGTGCCAGATTCCACCCTCCCCCAAGTCATG----------CTCTCACCCCAGCTTCATCCCTTCAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203893567 57 + 204313951 GGTGCCAGACTCCACCCTCCCCCAAGTCATG----------CACTCACCCCAGCTTCATTCCTCCAC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16047325 57 +  16417988 GGTGCCAGACTCCACCCTCCCCCAAGTTATG----------TACTCACCCCAGCTTCATTCCTCCAC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      134673 57 +    298490 ggtgccagACTCCACCCTCCCCCAAGTCATG----------CACTCACCCCAGCTTCATTCCTCCAC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25460142 57 -  25620257 GGTGCCAGACTCCACCCTCCCCCAAGTCATG----------CACTCACCCCCGCTTTATTCCTCCAC
i aotNan1.NW_018503740v1   C 0 I 3828
s otoGar3.GL873745           1911034 62 -   2165740 gaTGCAAGACTCCA----TCCCTGAGTCATGCTCCAAGCCCCACTCACC-CGGCTTCATCTGTCCAT
i otoGar3.GL873745         I 407 C 0
e canFam3.chr34             11753957 1564 +  42124431 I

a score=2118615.000000
s hg38.chr5_KI270793v1_alt    110331 256 +    126136 ACTCAGCATCTCTCCTGCTCCACCTTTCCT-GAGCTCGGAGCCTTCCTCCT--CTGAGCTCCTGAGGACAC---CTCCTCCTCCAAGGTCTTTTGGCTCAACCAGGTTGATGccacaatggcagaggttgtctgtcttattcctcctgtgtccccagtgcctgtccccagcagagtcctgcagatctgagcac--gtgaatggacatgtggatggatggatggatgagtgaatagatagatggatggatgcgtggattgatgaa
s panTro5.chr5             181376568 252 - 181907262 ACTCAGCATCTCTCCTGCTCCACCTTTCCT-GAGCTCAGAGCCTTCCTCCT--CTTAGCTCCTGAGGACAC---CTCCTCCTCCAAGgtcttttggctcaaccaggttgatgccacaagggcagagattgtctgtcttattcctcctgtgtccccagtgtctgtccccagcagagtcctgcagatctgagcac--gtgaatggacatg----tggatggatggatgagtgaatagatagatggatggatgcgtggattgatgaa
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095288 248 - 183735486 ACTCAGCATCTCTCCTGCTCCACCTTTCCT-GAGCTCAGAGCCTTCCTCCT--CTTAGCTCCTGAGGACAC---CTCCTCCTCCAGGgtcttttggctcaaccaggttgatgccacaagggcagagattgtctgtcttattcctcctgtgtccccagtgtctgtccccagcagagtcctgcagatctgagcac--gtgaatggacatg----tggatggatggatgagtga----atagatggatggatgcgtggattgatgaa
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      188996 252 +    698298 ACTCAGCATCTCTCCTGCTCCACCTTTCCT-GAGCTCAGAGCATTCCTCCT--CTGAGCTCCTGAGGACAC---CTCCTCCTCCAAGgtcttttggctcaaccaggttgatgccacaagggtagagattgtctgtcttattcctcctgtgtccccagtgcctgtccccagcagagtcctgcagatctgagcac--gtgaatggacatg----tggatggatggatgagtgaatagatagatggatggatgcgtggattgatgaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606646 248 - 121039945 ACTCAGCATCTCTCCTGCCCCCCCTTTCCT-GAGCTCAGAGCCTTCCTCCT--CTGAGCTCCTGAGGACAC---CTCCTCCTCCGAGgtcttttggctcaaccaagttggtgccacaagggcagagat----tgtcttattcctcctgtgtccccagtgcctgtccccagcagagtcctgcagatctgagcac--gtgaatggacatg----tggatgaatggatgagtGAatagatagatggatggatgcatggattgatgga
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563116 252 - 180051392 ACTCAGCATCTCTCCTGCCCCTCCTTTCCT-GAGCTCAGAGCCTTCCTCTT--CCCAGTTCCTGAGGGCAC---CTCCTCCTCTAAGgtcttttggctcaaccaagttggtgccacaagggcagggattgtctgtcttattcctcctgtgtccccagtgcctgtccccagcagggccctgcagatctgagcac--gtgaatggacacc----tggatggatggatgactgaatagatagatggatgaatgcgtggattgatgga
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296627 252 - 181584905 ACTCAGCATCTCTCCTGCCCCTCCTTTCCT-GAGCTCAGAGCCTTCCTCTT--CCCAGTTCCTGAGGGCAC---CTCCTCCTCTAAGgtcttttggctcaaccaagttggtgccacaagggcagggattgtctgtcttattcctcctgtgtccccagtgcctgtccccagcagggccctgcagatctgagcac--gtgaatggacacc----tggatggatggatgactgaatagatagatggatgaatgcgtggattgatgga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      302088 252 -   1764207 ACTCAGCATCTCTCCTGCCCCTCCTTTCCT-GAGCTCAGAGCCTTCCTCTT--CCCAGTTCCTGAGGGCAC---CTCCTCCTCTAAGgtcttttggctcaaccaagttggtgccacaagggcagggattgtctgtcttattcctcctgtgtccccagtgcctgtccccagcagggccctgcagatctgagcac--gtgaatggacacc----tggatggatggatgactgaatagatagatggatgaatgcgtggattgatgga
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      307314 252 -  16742782 ACTCAGCATCTCTCCTGCCCCTCCTTTCCT-GAGCTCAGAGCCTTCCCCTT--CCCAGTTCCTGAGGGCAC---CTCCTCCTCCAAGgtcttttggctcaaccaagttggtgccacaagggcagggattgtctgtcttattcctcctgtgtccccagtgcctgtccccagcagggccctgcagatctgagcac--gtgaatggacacc----tggatggatggatgactgaatagatagatagatgaatgcatggattgatgga
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608563 252 -  91010382 ACTCAGCATCTCTCCTGCCCCTCCTTTCCT-GAGCTCAGAGCCTTCCTCTT--CGCAGTTCCTGAGGGCAC---CTCCTCCTCCAAGgtcttttggctcaaccaagttggtgccacaagggcagggactgtctgtcttattcctcctgtgtccccagtgcctgtccccagcagggccctgcagatctgagcat--gtgaatggacacc----tggatggatggatgactgaagagatagatggatgaatgcatggattgatgga
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      204926 252 -    438239 ACTCAGCATCTCTCCTGCCCCTCGTTTCCT-GAGCTCAGAGCCTTCCTCTT--CCCAGTTCCTGAGGGCAC---CTCCTCCTCCAAGgtcttttggctcaaccaagttggtgccacaagggcagggattgtctgtcttattcctcctgtgtccccagtgcctgtccccagcagggccctgcagatctgagcac--gtgaatggacacc----tggatggatggatgactgaatagatagatggatgaatgcgtggattgatgga
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234568 250 -    514179 ACTCAGCATCTCTCCTGCCCCTCCTTTCCT-GAGCTCAGAGCCTTCCTCCT--CCCAGTTCCTGAGGGCAC---CTCCTCCTCCAAGGT-TTTTGGCTCAACCAAGTTGGTGCCAC-agggcagggattgtctgtcttattcctcctgtgtccccagtgcctgtccccagcagggccctgcagatctgagcac--gtgaatggacacc----tgggtggatggatgaCTGAATAGAGAgatggatgaatgtgtggattgatgga
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203893624 243 + 204313951 ACCCAGCGTCTCTCCTGCCCCTTCTCTCCT-GAACTCAGTGCCTTCCTTCT--CCCATCTCCTGAGGGCAtctcctcctcctccaaggtcttttgg--------------tgctacaagggcagggattgtctgtcttattcctgctgtgtctccagtgccagttcccagcaggatcctgcagatctgagtacgtgtgaatgcacacc----tggatggatggatgagtGAACAgatgtatggatagatgtgtggattgatgat
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16047382 243 +  16417988 ACCcagcctctctcctgccccttcattcct-gaactcagtgccttccttct--cccagctcctgagggcatctcctcctcctccaaggtcttttgg--------------tgctacaagggcagggattgtctgtcttattcctgctgtgtctccagtgccagtccccagcagggtcctgcaaatctgagcacacatgaatgcacacc----tggatggatggatgagtgaatagatgtatggatagatgtgtggattgatggt
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      134730 240 +    298490 ACCCAGCCTCTCTCCTGCCCCTTCTCTCCT-GAACTCAGTGCCTTCGTTCC--CCCAGCTCCTGAGGGCAT---CTCctcctccaaggtcttttgg--------------tgctacaagggcagggattgtctgttttattcctgctgtgtctcctgtgccagtccccagcagggtcctgcagctctgagcacacatgaatgcacacc----tgggtggatggatgagtgaatAgatgtatggatagatgtgtggattgatggc
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1911096 206 -   2165740 GCCCA-CAGCCCTCTTGCCCCACCTCCTATGGAGCACAGAATCCTCCAGCTACCCTAGCTCCCAAGACCAC---CTCCAACACCAAGTTTTTACAGCT--------------CCTCCAGGGTAGGGGCTGCCTGCTCTG-TCCTGCTATGTTCCCAGTG-------------GGCTCCTGTGAGTCT--------GTGA----ACACA----TAGA----------AGAGAATGGAGAGAAGAGTGGTTGAGTGGACTCATGTA
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e canFam3.chr34             11753957 1564 +  42124431 I

a score=528934.000000
s hg38.chr5_KI270793v1_alt    110587 126 +    126136 tggatgaatggatgagtaaatggatggaagggtggatgagcgaatgga-----tgaatgga-----------gtgaatggatggatggatgga-----------------------tgat-------------gggtggatggatggataagtggatggatgg-atgga-------------------------------------------------------------tgag-------tgaatg
s panTro5.chr5             181376820 109 - 181907262 tggatgaatggatgagtaaatggttggaagggtggatgagc---------------------------------gaatggatggatggatgga-----------------------tgat-------------gggtggatggatggataagtggatggacgg-atgga-------------------------------------------------------------tgag-------tgaatg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095536 107 - 183735486 tggatgaatggatgagtaaatggatggaa-ggtggatgagc---------------------------------gaatggatggatggatgga-----------------------tgat-------------gggt-gatggatggataagtggatggacgg-atgga-------------------------------------------------------------tgag-------tgaatg
i panPan2.chr5             C 0 I 3
s gorGor5.CYUI01015805v1      189248 105 +    698298 tggatgaatggatgagtaaatggatggaagggtggatgagc-------------------------------------gaatggatggatgga-----------------------tgat-------------gggtggatggatggataagtggatggacgg-atgga-------------------------------------------------------------tgag-------tgaatg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120606894 165 - 121039945 tggatgaatggatgagtaaatggatggaagggtggattagtgaatggatggagtgaatggatggatggatggatgagtgaatggatggatggagtgaatggatggatggagcggatggat-------------ggatggatggatgaatgagtggatggatgg-atgga-------------------------------------------------------------tgag-------tggatg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563368  86 - 180051392 tggatgaatggatgagcaaatggatgcaagggtggatgagt---------------------------------gaa-----------------------------------------------------------tggatggatggatggatggatggatgg-ttggg-------------------------------------------------------------tgaa-------tggatg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296879  87 - 181584905 tggatgaatggatgagcaaatggatgcaagggtggatgagt---------------------------------gaa-----------------------------------------------------------tggatggatggatggatggatagatggtttggg-------------------------------------------------------------tgaa-------tggatg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      302340 107 -   1764207 tggatgaatggatgagcaaatggatgcaagggtggatgagt---------------------------------gaatggatggatggatgga-----------------------tgag----------------tggatggatggatggatggatggatggtttggg-------------------------------------------------------------tgaa-------tggatg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      307566 119 -  16742782 tggatgaatggatgagtaaatggatgcaagggtggatgagt---------------------------------gaatggatggatggatgga-----------------------tgag----tggatggatggatggatggatggatggatggatgaatggtttggg-------------------------------------------------------------tgaa-------tggatg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608815  74 -  91010382 tggatgaatggatgagtaaatggatgcaagggtggatgagt---------------------------------gaatggatggatggatgga-----------------------tgga--------------------------------------------------------------------------------------------------------------tgga-------tggatg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      205178 184 -    438239 tggatgaatggatgagtaaatggatgcaagggtggatgagt---------------------------------gaatggatggatggatgga-----------------------tggatgagtggatggatggatggatggatggatggatagatggatggtttgggtgaatggatgagtgaatggatggatggatgggtagatagatggatggatggatggtttgggtgaa-------tggatg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234818 106 -    514179 tggatgaatggatgagtaaatggat----ggatggatgggt---------------------------------ggat-gatgggtggatggg-----------------------tgaa------------tggatggatggatgggtggatgtatggatggcttggg-------------------------------------------------------------tgaa-------tggatg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203893867 125 + 204313951 tgcatgaatggatgaataaatggatggatgggtggatgggt---------------------------------gagtgagtgagtagatgga-----------------------tgga----tggatggatgagtggactgatggatggatgagtgagtgg-atggg-------------------------------------------------------------caaggagttgatggatg
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16047625 118 +  16417988 tggatgaatggatgagtaaatggatggatgggtggatgggt---------------------------------gagtgagtggatgggtgga-----------------------tggg----tgagtgcgtgagtggatggatagatcaatgaatggatgg-atgga-------------------------------------------------------------tcag-------tgaatg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      134970 118 +    298490 tggatgactggatgagtaaatggatggatgggtggatgggt---------------------------------gagtgagtgagtggatgga-----------------------tgga----tggatcagtgaatggatggatggatgagtggactgatgg-atgga-------------------------------------------------------------tgag-------tgagtg
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e otoGar3.GL873745           1911302   0 -   2165740 C
e canFam3.chr34             11753957 1564 +  42124431 I

a score=209699.000000
s hg38.chr5_KI270793v1_alt    110713 45 +    126136 gtcagat-gggtggatgag----t---------------ggatggatggatggatggat------------ggatgg
s panTro5.chr5             181376929 49 - 181907262 gtcggat-gggtggatgagtgtat---------------ggatggatggatggatggat------------ggatgg
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      189353 50 +    698298 gatggatggggtggatgggtgggt---------------gggtggataagtggatggac------------ggatgg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120607059 48 - 121039945 gatggat-ggatggatga-tggct---------------ggatggatgagtggatggac------------ggatgg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563454 45 - 180051392 ----agt-gaatggatggatggat---------------gggtagatggatggatggat------------ggatgg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181296966 45 - 181584905 ----agt-gaatggatggatggat---------------gggtagatggatggatggat------------ggatgg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      302447 45 -   1764207 ----agt-gaatggatggatggat---------------gggtagatggatggatggat------------ggatgg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      307685 45 -  16742782 ----agt-gaatggatggatggat---------------gggtagatggatggatggat------------ggatgg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608889 42 -  91010382 ----agt-gaatggatggatggat---------------ggatggatggatggatggat------------gga---
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      205362 42 -    438239 ----agt-gaatggatagatggat---------------gggtggatggatggatggat------------gga---
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      234924 39 -    514179 ----agt-gaatggatggatggat---------------gggtggatgtatggatggct------------------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203893992 71 + 204313951 ----agt-ggatggatggatgggtgagggattgacagatgagtgagtggatggatggat-gatgagtgaatggatgg
i calJac3.chr2             C 0 I 7
s saiBol1.JH378155          16047743 69 +  16417988 ----aat-ggatggatggatgagt---ggactgatggatggatgagtgagtggatggatgggtgaatggatggatgg
i saiBol1.JH378155         C 0 I 6
s cebCap1.NW_016108158v1      135088 45 +    298490 ----aat-ggatgggtggatgggt---------------gagtgagtgagtggatggat------------ggatgg
i cebCap1.NW_016108158v1   C 0 I 1370
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e otoGar3.GL873745           1911302  0 -   2165740 C
e canFam3.chr34             11753957 1564 +  42124431 I
e panPan2.chr5             183095643  3 - 183735486 I

a score=30804.000000
s hg38.chr5_KI270793v1_alt    110758 19 +    126136 tt-----------------------------------tggatggatggatggtt
s panTro5.chr5             181376978 19 - 181907262 tt-----------------------------------tggatggatggatggtt
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      189403 19 +    698298 tt-----------------------------------tggatggatggatggtt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120607107 46 - 121039945 atgagtgaatggtcggatgagtggatgga--------tggatggatggatggtt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563499 16 - 180051392 tt-----------------------------------tgggtgaatggatg---
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181297011 16 - 181584905 tt-----------------------------------tgggtgaatggatg---
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      302492 51 -   1764207 tt---tgggtgaatggatgagtggatggatggatgggtgggtggatggatggat
i macNem1.NW_012012389v1   C 0 I 79
s cerAty1.NW_012009470v1      307730 16 -  16742782 tt-----------------------------------tgggtgaatggatg---
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608931 13 -  91010382 -------------------------------------tgggtggatggtt----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      205404 17 -    438239 -------------------------------------tggatggatggatggat
i manLeu1.NW_012110441v1   C 0 I 63
s calJac3.chr2             203894070 19 + 204313951 -----------------------------------aatggatggatggatgagt
i calJac3.chr2             I 7 I 11
s saiBol1.JH378155          16047818 19 +  16417988 -----------------------------------agtgaatggatggatgagt
i saiBol1.JH378155         I 6 I 11
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e otoGar3.GL873745           1911302  0 -   2165740 C
e cebCap1.NW_016108158v1      135133 1370 +    298490 I
e canFam3.chr34             11753957 1564 +  42124431 I
e colAng1.NW_012118799v1      234963  0 -    514179 C
e panPan2.chr5             183095643  3 - 183735486 I

a score=31301.000000
s hg38.chr5_KI270793v1_alt    110777 24 +    126136 --------tcggtgaatg----gacga-gtgga---tgga
s panTro5.chr5             181376997 24 - 181907262 --------ttggtgaatg----gatga-gtgga---tgga
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      189422 24 +    698298 --------ttggtgaatg----gacga-gtgga---tgga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120607153 25 - 121039945 --------tggatggatg----gatggcttgga---tgag
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563515 18 - 180051392 ----------agtgaatg----gatgg-atgga-------
i rheMac8.chr6             C 0 I 4
s macFas5.chr6             181297027 18 - 181584905 ----------agtgaatg----gatgg-atgga-------
i macFas5.chr6             C 0 I 4
s cerAty1.NW_012009470v1      307746 18 -  16742782 ----------agtgaatg----gatgg-atgga-------
i cerAty1.NW_012009470v1   C 0 I 8
s chlSab2.chr4              90608944 23 -  91010382 --------tgggtgaatg----gatga-gtgaatgg----
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      234963 20 -    514179 --------tgggtgaatg----gatga-gtgga-------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203894100 28 + 204313951 ttgatggatggatgagtg----agtga-atgga-------
i calJac3.chr2             I 11 C 0
s saiBol1.JH378155          16047848 32 +  16417988 tggatggatagatgagtggactgatga-atgga-------
i saiBol1.JH378155         I 11 C 0
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e otoGar3.GL873745           1911302  0 -   2165740 C
e cebCap1.NW_016108158v1      135133 1370 +    298490 I
e canFam3.chr34             11753957 1564 +  42124431 I
e manLeu1.NW_012110441v1      205421 63 -    438239 I
e macNem1.NW_012012389v1      302543 79 -   1764207 I
e panPan2.chr5             183095643  3 - 183735486 I

a score=96629.000000
s hg38.chr5_KI270793v1_alt    110801 20 +    126136 tgggtgga--------tggatggatgga
s panTro5.chr5             181377021 28 - 181907262 tgggtggatgggtgggtggatggatgga
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      189446 20 +    698298 tgggtgga--------tgggtgggtgga
i gorGor5.CYUI01015805v1   C 0 I 277
s nomLeu3.chr6             120607178 20 - 121039945 tggatgga--------tgggtggatggg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563537 20 - 180051392 tggatgga--------tggatggatgga
i rheMac8.chr6             I 4 C 0
s macFas5.chr6             181297049 20 - 181584905 tggatgga--------tggatggatgga
i macFas5.chr6             I 4 C 0
s macNem1.NW_012012389v1      302622 20 -   1764207 tggatgga--------tggatagatgga
i macNem1.NW_012012389v1   I 79 C 0
s cerAty1.NW_012009470v1      307772 20 -  16742782 tggatgga--------tggatggatgga
i cerAty1.NW_012009470v1   I 8 C 0
s chlSab2.chr4              90608967  9 -  91010382 -------------------atggatgga
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      205484 20 -    438239 tggatgga--------tggatagatgga
i manLeu1.NW_012110441v1   I 63 C 0
s colAng1.NW_012118799v1      234983 20 -    514179 tgagtgga--------tggatggatgga
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203894128 20 + 204313951 tgagtgaa--------tggatggatagg
i calJac3.chr2             C 0 I 3
s saiBol1.JH378155          16047880 20 +  16417988 tgagtgaa--------tggattgatgga
i saiBol1.JH378155         C 0 I 4
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e otoGar3.GL873745           1911302  0 -   2165740 C
e cebCap1.NW_016108158v1      135133 1370 +    298490 I
e canFam3.chr34             11753957 1564 +  42124431 I
e panPan2.chr5             183095643  3 - 183735486 I

a score=1914429.000000
s hg38.chr5_KI270793v1_alt    110821 446 +    126136  
s panTro5.chr5             181377049 454 - 181907262  
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      189743 410 +    698298  
i gorGor5.CYUI01015805v1   I 277 C 0
s nomLeu3.chr6             120607198 482 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563557 441 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181297069 441 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      302642 517 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      307792 577 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90608976 356 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      205504 502 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      235003 434 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203894151 562 + 204313951  
i calJac3.chr2             I 3 C 0
s saiBol1.JH378155          16047904 524 +  16417988  
i saiBol1.JH378155         I 4 C 0
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e otoGar3.GL873745           1911302   0 -   2165740 C
e cebCap1.NW_016108158v1      135133 1370 +    298490 I
e canFam3.chr34             11753957 1564 +  42124431 I
e panPan2.chr5             183095643   3 - 183735486 I

a score=61898.000000
s hg38.chr5_KI270793v1_alt    111267 20 +    126136 tggatgagtgg------------ataggtgga
s panTro5.chr5             181377503 20 - 181907262 tggatgagtgg------------ataggtgga
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095646 20 - 183735486 tggatgagtgg------------ataggtgga
i panPan2.chr5             I 3 C 0
s gorGor5.CYUI01015805v1      190153 19 +    698298 tggatgagtgg-------------taggtgga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120607680 20 - 121039945 tggatgtgtgg------------atagatgga
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179563998  4 - 180051392 ----------------------------tgga
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181297510  4 - 181584905 ----------------------------tgga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      303159  4 -   1764207 ----------------------------tgga
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      308369 32 -  16742782 tggatgagtggattgatggatggatgggtgga
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90609332 32 -  91010382 tggatgagtggattgatggatggatgggtgga
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      206006 32 -    438239 tggatgagtggattgatggatggatgggtgga
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      235437 32 -    514179 tggatgagtggattgatggatggatgggtgga
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203894713 20 + 204313951 tggatgagtgg------------atggatgga
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16048428 20 +  16417988 tggatgagtgg------------attgatgga
i saiBol1.JH378155         C 0 I 690
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e otoGar3.GL873745           1911302  0 -   2165740 C
e cebCap1.NW_016108158v1      135133 1370 +    298490 I
e canFam3.chr34             11753957 1564 +  42124431 I

a score=330137.000000
s hg38.chr5_KI270793v1_alt    111287 47 +    126136 tgagtga----atggatgg----atgaatgagtgagtgagtgaatggacagatgg
s panTro5.chr5             181377523 51 - 181907262 tgagtgaatggatggatgg----atgaatgagtgagtgagtgaatggacagatgg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095666 51 - 183735486 tgagtgaatggatggatgg----atgaatgagtgagtgagtgaatggacagatgg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      190172 51 +    698298 tgagtgaatggatggatgg----atgaatgagtgagtgagtgaatggacagatgg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120607700 47 - 121039945 tgagtga----atgggtgg----atggatgagtgagtgagtgaatggacagatgg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564002 47 - 180051392 tgagtga----atggatgg----atggatgagtgagtgagtgaatggacagatgg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181297514 47 - 181584905 tgagtga----atggatgg----atggatgagtgagtgagtgaatggacagatgg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      303163 47 -   1764207 tgagtga----atggatgg----atggatgagtgagtgagtgaatggacagatgg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      308401 47 -  16742782 tgagtga----atggatgg----atggatgagtgagtgagtgaatggacagatgg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90609364 51 -  91010382 tgagtga----gtggatgggtgaatggatgagtaaatggatggatgggcagatgg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      206038 47 -    438239 tgagtga----atggatgg----atggatgagtgagtgagtgaatggacagatgg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      235469 47 -    514179 tgagtga----atgcatgg----atggatgggtgagtgagtgaatggacagatgg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203894733 47 + 204313951 tgagtag----attgatgg----atggatgagtgagtgaatggatggatgggtgg
i calJac3.chr2             C 0 I 1099
s saiBol1.JH378155          16049138 47 +  16417988 tgagtgg----atggatgg----gtgcataggtggatggatggatggataggtgg
i saiBol1.JH378155         I 690 C 0
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e otoGar3.GL873745           1911302  0 -   2165740 C
e cebCap1.NW_016108158v1      135133 1370 +    298490 I
e canFam3.chr34             11753957 1564 +  42124431 I

a score=741569.000000
s hg38.chr5_KI270793v1_alt    111334 118 +    126136 atggatggctgatgcgtgaatggttgg-tggatggatgagtggattgatggatggatgagtgagtggatgggtgaatggatga----------------gtaaatggagggatgggcggaaggatgggtagatat
s panTro5.chr5             181377574  98 - 181907262 atggatggctgatgcgtgaatggttgg---------------------tggatagatgagtgagtggatgggcgaatggatga----------------gtaaatggagggatgggcggaaggatgggtagatat
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095717  98 - 183735486 atggatggctgatgtgtgaatggttgg---------------------tggatagatgagtgagtggatgggcgaatggatga----------------gtaaatggagggatgggtggaaggatgggtagatat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      190223 117 +    698298 atggatggctgatgcgtgaatggttgg-tggatggatgagtggattgatggatggatgagtgagtggatgggtgaatggatga----------------gtaaatggagggatgggcgg-aggatgggtagatat
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120607747 118 - 121039945 atggatggctgatgcgtgaatggttgg-tggatggatgagtggattgatggatggatgagcgagtggatgggtgaatggatga----------------gtaaatggagggatgggcggaaggatgggtagatgt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564049 118 - 180051392 gtggatggctgatgagtgaatggatgg-tagatggataagtggattgatggatggatgagtgagtggatgggtgaatggatga----------------gtaaatggatggatgggcagatggatgggtagatgt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181297561 118 - 181584905 gtggatggctgatgagtgaatggatgg-tggatggataagtggattgatggatggatgagtgagtggatgggtgaatggatga----------------gtaaatggatggatgggcagatggatgggtagatgt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      303210 118 -   1764207 gtggatggctgataagtgaatggatgg-tggatggataagtggattgatggatggatgagtgagtggatgggtgaatggatga----------------gtaaatggatggatgggcagatggatgggtagatgt
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      308448 118 -  16742782 gtggatggctgatgagtgaatggatgg-tggatggataagtggattgatggatggatgagtgagtggatgggtgaatggatga----------------gtaaatggatggatgggcagatggatgggtagatgt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90609415 118 -  91010382 gtggatggctgatgactgaatggatgg-tggatggataagtggattgacggatggatgagtgagtggatgggtgaatggatga----------------gtaaatggatggatgggcagatggatgggtagatgt
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      206085 118 -    438239 gtggatggctgatgagtgaatggatgg-tggatggataagtggattgatggatgggtgagtgagtggatgggtgaatggatga----------------gtaaatggatggatgggcagatggatgggtagatgt
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      235516 118 -    514179 gtggatgactgatgagtgaatggatgg-tggacggatgagtggattgatggatggatgagtgagtggatggatgaatagatga----------------gtaaatggatggatgggcagatggatgggtagatgt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203895879 132 + 204313951 atggatg---ggtgagtggatgggtagatggatggatgaatggatagatgaatggatgagtgaatagatggatgggtggatgggtttgtggatgcatgggtggatggatgggtgagtggatggaaggattaatgg
i calJac3.chr2             I 1099 C 0
s saiBol1.JH378155          16049185 120 +  16417988 atggatg---ggtgagtggatgagtggatggatggatgaatggatagatgaatgggtgagtgaatagatggatgggtggatgggttt------------gtggatggatgggtgagtggatggaaggatggatgg
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e otoGar3.GL873745           1911302   0 -   2165740 C
e cebCap1.NW_016108158v1      135133 1370 +    298490 I
e canFam3.chr34             11753957 1564 +  42124431 I

a score=7085.000000
s hg38.chr5_KI270793v1_alt    111452 1 +    126136 g
s panTro5.chr5             181377672 1 - 181907262 g
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095815 1 - 183735486 g
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      190340 1 +    698298 g
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120607865 1 - 121039945 g
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564167 1 - 180051392 g
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181297679 1 - 181584905 g
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      303328 1 -   1764207 g
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      308566 1 -  16742782 g
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90609533 1 -  91010382 g
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      206203 1 -    438239 g
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      235634 1 -    514179 g
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203896011 1 + 204313951 a
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16049305 1 +  16417988 a
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      136503 1 +    298490 g
i cebCap1.NW_016108158v1   I 1370 C 0
e aotNan1.NW_018503740v1    25460199 3828 -  25620257 I
e otoGar3.GL873745           1911302 0 -   2165740 C
e canFam3.chr34             11753957 1564 +  42124431 I

a score=1046478.000000
s hg38.chr5_KI270793v1_alt    111453 127 +    126136 tggat------------------------ggatgga----tggatggatgagtggatggatggatgcacccacaggtgggtgaaggagg-------aatgaacgaatgagtggatggacaaatggatggatgaatgCACACATGGGAGAGTGAAGGAGTGGA
s panTro5.chr5             181377673 127 - 181907262 tggat------------------------ggatgga----tggatggatgagtggatggatggatgcacccacaggtgggtgaaggagg-------aatgaacgaatgagtggatggacaaatggatggatgaatgcacgcatggGAGAGTGAAGGAGTGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095816 127 - 183735486 tggat------------------------ggatgga----tggatggatgagtggatggatggatgcacccacaggtgggtgaaggagg-------aatgaacgaatgagtggatggacaaatggatggatgaatgcacgcatggGAGAGTGAAGGAGTGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      190341 127 +    698298 tggat------------------------ggatgga----tggatggatgagtggatggatggatgcacccacaggtgggtgaaggagg-------aatgaacgaatgagtggatggacaaatggatggatgaatgcacgcatgggagagtgaaggagtgga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120607866 123 - 121039945 ----t------------------------ggatgga----tggatggatgagtggatggatggatgcacccacaggtgggtgaaggagg-------aatgaacgaatgagtggatggacaaatggatggatgaatgcacgcatggGAGAGTGAAGTAGTGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564168 138 - 180051392 tggaa----ggatggatggatggatggatggatgga----tggatggatgagtggatggatggatgcacccac---------aaggagg-------aatgaatgaatgagtagatggacaaatggatggatgaatgcacgcatggGAGAGTAAAGGAGTGGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181297680 134 - 181584905 tggaa--------ggatggatggatggatggatgga----tggatggatgagtggatggatggatgcacccac---------aaggagg-------aatgaatgaatgagtagatggacaaatggatggatgaatgcacgcatggGAGAGTAAAGGAGTGGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      303329 142 -   1764207 tggaaggatggatggatggatggatggatggatgga----tggatggatgagtggatggatggatgcacccac---------aaggagg-------aatgaatgaatgagtagatggacaaatggatggatgaatgcacgcatggGAGAGTAAAGGAGTGGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      308567 138 -  16742782 tggaa----ggatggatggatggatggatggatgga----tggatggatgagtggatggatggatgcacccac---------aaggagg-------aatgaatgaatgagtagatggacaaatggatggatgaatgcacgcatggGAGAGTAAAGGAGTGGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90609534 126 -  91010382 tggaa------------ggatggatggatggatg--------gatggatgggtgaatggatggatgcacccac---------aaggagg-------aatgaatgaatgagtagatggataaatggatggatgaatgcacgcatggGAGAGTAAAGGAGTGGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      206204 130 -    438239 tggaa------------ggatggatggatggatgga----tagatggatgagtggatggatggatgcatccac---------aaggagg-------aatgaatgaatgagtagatggacaaatggatggatgaatgcacgcatggGAGAGTAAAGGAGTGGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      235635 119 -    514179 tggca--------ggatagatgggtggacggatgga----tggatggatgagtgggtg------------------------aaggagg-------aatgaacgaatgagtagatggacaaatggatggatgaatgCACACATGGGAGAGTAAAGGAGTGGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203896012 127 + 204313951 ------------------------tggataggtgga----tggatgggtgaatggacagatggatgcacccacaggtgggtgaaagaag-------aatgaatgaatgagtggatggacaaatggatggatgagtgcatacacgggagagtgaaggagtgga
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16049306 129 +  16417988 ------------------------tggataggtggatgggtgggtgggtgaatggatagatggatgCACCCACAGGtgggtgaaggaag-------aatgaatgaatgagtggatggacaaaggggtggatgagtgcat--acgggagagtgaaggagtgga
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      136504 131 +    298490 ------------------------tggataggtgga----tggacgggtgaatggatagttggatgtacccacaggtgggtgaaggaagaatgaataatgaatgaatgagtggatggacaaagggatggatgAGTGCACACATGGGAGAGTGA---AGTGGA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25464027 127 -  25620257 ------------------------tggataggtgga----tggatgggtgaatggacagatggatgcacccacaggtgggtgaaggaag-------aatgaatgaatgagtggatggacaaatggatggatgCGTGCATACACAGGAGAGTGAAGGAGTGGA
i aotNan1.NW_018503740v1   I 3828 C 0
e otoGar3.GL873745           1911302   0 -   2165740 C
e canFam3.chr34             11753957 1564 +  42124431 I

a score=3833430.000000
s hg38.chr5_KI270793v1_alt    111580 370 +    126136 GGGATAAACATTGGCTTCCCATGTG----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTCGGCTGAATTATTTCCTTAAATTACTGCAGAGCCTCCAGTGAGCAGCACACCTACTTCTGGATGACAATGGCTTTAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGCAATTGCAGCATCGGCTCAGAGCACTT-TGGCAGATCTGGGCTCAGCATGGTGAGCACCATCTGCCCCACACAGAGCTCTCTCAGGAGTGGGTCATGTGCCCAGAGAGAAACCACGCTCACCTGGCCTAAAACATGCTCCACTGTCAGCTGAAA
s panTro5.chr5             181377800 370 - 181907262 GGGATAAACATTGGCTTCCCATGTG----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTTGGCTGAATTATTTCCTTAAATTACTGCAGAGCCTCCAGGAAGCAGCACACCTACTTCTGGATGACAATGGCTTTAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGGAATTGCAGCATCGGCTCAGAGCACTT-TGGCAGATCTGGGCTCCGCATGGTGAGCACCATCTGCCCCACACAGAGCTCTCCCAGGAGTGGGTCATGTGCCCAGAGAGAAACCCCACTCACCTGGCCTAAAACATGTTCCACTGTCAGCTGAAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183095943 370 - 183735486 GGGATAAACATTGGCTTCCCATGTG----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTTGGCTGAATTATTTCCTTAAATTACTGCAGAGCCTCCAGGGAGCAGCACACCTACTTCTGGATGACAATGGCTTTAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGGAATTGCAGCATCGGCTCAGAGCACTT-TGGCAGATCTGGGCTCCTCATGGTGAGCACCATCTGCCCCACACAGAGCTCTCCCAGGAGTGGGTCATGTGCCCAGAGAGAAACCCCACTCACCTGGCCTAAAACATGTTCCACTGTCAGCTGAAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      190468 370 +    698298 gggatAAACATTGGCTTCCCATGTG----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTCAGCTGAATTATTTCCTTAAATTACTGCGGAGCCTCCAGGGAGCAGCACACCTACTTCTGGATGACAATGGCTTTAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGCAATTGCAGCATCGGCTCAGAGCACTT-TGGCAGATCTGGGCTCCGCATGGTGAGCACCGTCTGCCCCACACAGAGCTCCCCCAGGAGTGGGTCATGTGCCCGGAGAGAAACCACGCTCACCTGGGCTAAAACATGCTCCACTGTCAGCTGAAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120607989 370 - 121039945 GGGATAAACATTGGCTTCCCATGTG----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTCAGCTGAATTATTTCCTTAAATTACCACAGAGCCTCCAGTGAGCAGCACACCTACTTCTGGATGACAATGGCTTTAGAGGCGCCGCCTTCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGCAGTTGCAGCATCAGCTCAGAGCACTT-TGGCAGATCTGGGCTCAGCATGGTGAGCACCATCTGCCCCACACAGAGCTCTCCCAGGAGTGGGTCATGTGCCCAGAGAGAAACCACACTCACCTGGCCTAAAACATGCTCCACTGTCAGCTGAAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564306 368 - 180051392 GGGATAAACATTGGCTTACCATGTA----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTTGGCTAAACTATTTCCTTAAATTACCACAGCGCCTCCAGTGAGCAGCACACCTACTTCCGGATGACAATGGCTTTAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGCAATTGCAGCATCGGCTCAGA--GCTT-TGGCAGATCTGGGCTCAGCATGGTGAGCACCATCGGCCCCACACAGAGCTTTCCCAGGAGTGGGTCATGTGCGCGGAGAGAAACCACACTCACCTGGCCTAAAACATGCTCTACTGTCAGCTGAAA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181297814 368 - 181584905 GGGATAAACATTGGCTTACCATGTA----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTTGGCTAAATTATTTCCTTAAATTACCACAGCGCCTCCAGTGAGCAGCACACCTACTTCCGGATGACAATGGCTTTAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGCAATTGCAGCATCGGCTCAGA--GCTT-TGGCAGATCTGGGCTCAGCATGGTGAGCACCATCGGCCCCACACAGAGCTTTCCCAGGAGTGGGTCATGTGCGCGGAGAGAAACCACACTCACCTGGCCTAAAACATGCTCTACTGTCAGCTGAAA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      303471 367 -   1764207 GGGATAAACATTGGCTTACCATGTA----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTTGGCTAAACTATTTCCTTAAATTACCACAGCGCCTCCAGTGAGCAGCACACCTACTTCCGGATGACAATGGCTTTAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGCAATTGCAGCATCGGCTCAGA--GCTT-TGGCAGATCTGGGCTCAGCATGGTGAGCACCATCGGCCCCACACAGAGCTTTCCCAGGAGTGGGTCATGTGCCCGGAGAGAAACCACACTCACCTGGCCT-AAACATGCTCTACTGTCAGCTGAAA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      308705 368 -  16742782 GGGATAAACATTGGCTTACCATGTA----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTTGGCTAAACTATTTCCTTAAATTACCACAGCGCCTCCAGTGAGCAGCACACCTACTTCCGGATGACAATGGCTTTAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGCAATTGCAGCATCGGCTCAGA--GCTT-TGGCAGATCTGGGCTCAGCATGGTGAGCACCATCGGCCCCACACAGAGCTTTCCCAGGAGTGGGTCATGTGCCCGGAGAGAAACCACACTCACCTGGCCTAAAACATGCTCTACTGTCAGCTGAAA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90609660 370 -  91010382 GGGATAAACATTGGCTTACCATGTG----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTTGGCTAAACTATTTCCTTAAATTACCACAGCGCCTCCAGTGAGCAGCACACCTACTTCCGGATGACAATGGCTTCAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGCAATTGCAGCATCGGCTCAGAGCGCTC-TGGCAGATCTGGGCTCAGCGTGGTGAGCACCATCGGCCCCACACAGAGCTTTCCCAGGAGTGGGTCATGTGCCCAGAGAGAAACCACACTCACCTGGCCTAAAACATGCTCTACTGTCAGCTGAAA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      206334 368 -    438239 GAGATAAACATTGGCTTACCATGTA----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTTGGCTAAACTATTTCCTTAAATTACCACAGCGCCTCCAGTGAGCAGCACACCTACTTCCGGATGACAATGGCTTTAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGAC-AAGCAATTGCAGCATCGGCTCAGA--GCTT-TGGCAGATCTGGGCTCAGCATGGTGAGCACCATCGGCCCCACACAGAGCTTTCCCAGGAGTGGGTCATGTGCCCGGAGAGAAACCACACTCACCTGGCCTAAAACATGCTCTACTATCAGCTGAAA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      235754 369 -    514179 GGGATAAACATTGGCTTACCATGTG----TAAGCTTCATCCAAAACCATCT-GACACTGGGCCCAGGAAGAGGCTGTCTCAGCTCCTTGGCTAAACTATTGCCTTAAATTACCGCAGCGCCTCCAGTGAGCAGCACACCTACTTCCGGATGACAATGGCTTTAGAGGCGCCGCCTGCCAAGGAGTGGCAGACTTGACCTGCAAAGTGGGATCATTGAC-AAGCAATTGTGGCACTGGCTCAGAGCGCTC-TGCCAGATCTGGGCTCAGCATGGTGAGCACCATGTGCCCCACACAGAGCTTTCCCAGGAGTGGGTCATGTGCCCGGAGAGAAACCACGCTCACCTGGCCTAAAACATGCTCTACTGTCAGCTGAAA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203896139 345 + 204313951 aggaCAAACGTTGGCTTCCCACGTG----TAAGCTTCATCCAAAACCATCTGGACACTGGGCCCAGGGAGAGGCTTTCTCAGCTCCTTGGCTGAATTATTTCCTTAAATTACCACAGAGTGTCCTGTGAGCAGCACATCTACTTCCAGATGACAATGGCTTTAGAGGCGCCACCTGC--------------------------AGTGGGATCATTGACAAAGTGATTGCAGCATCAGCTCAGAGCACGC-TGGCAGATCTTGGCTCAGGATGGAGAGCACCATCTGCCCCCAGCAGAGCTCCTCCAGGAGTGGGTCATGTGCCGGGAGAGAAATCGCACTCACCTGGCCTAAAACATGCTCtattgtcagctgaaa
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16049435 371 +  16417988 gggatgaatgTTGGCTTCCCATGTG----TAAGCTTCATCTAAAACCATCTGGACACTGGGCCCAGGGAGAGGCTTTCTCAGTTCCTTGGCTGAATTATTTCCTTAAATTACCACAGAGTCTCCCGTGAGCAGCACATCTACTTCCATATGACAATGGCTTTAGAGGCGCCACCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGACAAAGTGATTGCAGCATCAGCTCAGAGCACTT-TGGCAGACCTTGGCTCAGGATGGAGAGCACCATCTGCCCCCAACAGAGCTCTTCCAGGAGTGGGTTATGTGCCAGGAGAGAAACCACACTCACCTGGCCTAAAATATGCTCTATTGTCAGCCGAAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      136635 371 +    298490 GGGATGAACGTTGGCTTCCCATGTG----TAAGCTGCATCCAAAACCATCTGGACACTGGGCCCAGGGAGAGGCTTTCTCAGCTCCCTGGCTGAATTATTTCCTTAAATTACCACGGAGTCTCCTGTGAGCAGCACATCTACTTCCAGATGACAATGGCTTTAGAGGCGCCACCTGCCAAGGAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGACAAAGTGATTGCAGCATCAGCTCAGAGCACTT-TGGCAGATCTTGGCTCAGGGTGGAGAGTACCATCTGCCCCCCACAGAGCTCTTCCAGGAGTGGGTCATGTGCCGGGAGAGAAACCACACTCACCTGGCCTAAAACATGCTCtattgtcagctgaaa
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25464154 370 -  25620257 GGGATGAACATTGACTTCCCATGTA----TAAGCTTCATCCAAAACCCTCTGGACACTGGGCCCAGGTAGAGGCTTTCTCAGCTCCTTGGCTGAATTATTTCCTTAAATTGCCACAGGGTCTCCCGGGAGCAGCACATCTACTTCCAGGTGACAATGGCTTTAGCAGTGCCACCTGCCAAGAAGTGGCAGACTTAACCTGCAAAGTGGGATCATTGACAAAGTGATTGCAGCATCAGCCCAGAGCACTT-TGGCAGATCTTGGCTCAGGATGGAGAGCGCCATCTGCCCCC-ACAGAGCTCTTCCAGGAGTGGGTCATGTGCCGGGAGAGAAACCACACTCGCCTGGCCTAAAACATGCTCTATCGTCAGCTGAAA
i aotNan1.NW_018503740v1   C 0 I 29
s otoGar3.GL873745           1911302 345 -   2165740 AGCATCAACATTGGCCTTTCATTTGTCCATAAGCC-CATCC-AAACCATCTGGACACTGGGCCCAAA-------------AGCTTCTTAGCAGAATTCCTCCCCCAAGTTGCCACACTGCCTCCTATGAGTGGCACACCCGCTTCCGAGGGACAACACCCTCAGAGGTGCTGCCTGCCAAGGAACAGCAG--TTAATCTGCAGAGTGGGGTCACTGCC-ATGCGACGTTGGCAGCAGCTTAGGGCACTGAGGGCCAGTAGGGGCCCAGTGTGG-GTGCATGCTCCA-CCCATACAGAGCCCACCCAGCAGC---TCTTGTCCCTGGGAGGAAGCTAGGCTGACCTG-------ACATGCTCTTTACCAAGCCAAC-
i otoGar3.GL873745         C 0 C 0
e canFam3.chr34             11753957 1564 +  42124431 I

a score=60343.000000
s hg38.chr5_KI270793v1_alt    111950 20 +    126136 -------TCTTAGCTA-------------TGCCTTAGCTA
s panTro5.chr5             181378170 20 - 181907262 -------TCTTAGCTA-------------TGCCTTAGCTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096313 20 - 183735486 -------TCTTAGCTA-------------TGCCTTAGCTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      190838 20 +    698298 -------TCTTAGCTA-------------TGCCTTAGCTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608359 18 - 121039945 -------TCGTAGCTA-------------TGCCTTAGC--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564674 18 - 180051392 -------Tcttagcta-------------tgccttagc--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298182 18 - 181584905 -------Tcttagcta-------------tgccttagc--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      303838 18 -   1764207 -------Tcttagcta-------------tgccttagc--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309073 18 -  16742782 -------Tcttagcta-------------tgccttagc--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610030 18 -  91010382 -------Tcttagcta-------------tgccttagc--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      206702  7 -    438239 -------T------------------------CTTAGC--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236123 18 -    514179 -------TCTTAGCCA-------------TGCCTTAGC--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203896484 29 + 204313951 ---------ttggctgccctggattctgctgccttggc--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16049806 29 +  16417988 ---------TTGGCTGTCCTGGATTCTGCTGCCTTGGC--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      137006 29 +    298490 ---------ttggctgccctggattctgctgccttggc--
i cebCap1.NW_016108158v1   C 0 C 0
s otoGar3.GL873745           1911647 29 -   2165740 TCCATGCTCTGGACTCACCC---------CACCCTAGT--
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25464524 29 -  25620257 I
e canFam3.chr34             11753957 1564 +  42124431 I

a score=1537107.000000
s hg38.chr5_KI270793v1_alt    111970 143 +    126136 TATGCCTTCTGGAATAAGACAGA-CAAACCCAGCCCCATCCTGATGTTGCCAGACCTCGGAAGATGCAGACACACCCTGGGCAGGCCCTGACTT-GGTGCTGGAACTGCCCAACCTGGCACCCTCCTGGGACACAGAATAGAACT
s panTro5.chr5             181378190 143 - 181907262 TATGCCTTCTGGAATAAGACAGA-CAAACCCAGCCCCATCCTGATGTTGCCAGACCTCGGAAGATGCAGACACACCCTGGGCAGGCCCTGACTT-GGTGCTGGGACTGCCCAACCTGGCACCCTCCTGGGACACAGAATAGAACT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096333 143 - 183735486 TATGCCTTCTGGAATAAGACAGA-CAAACCCAGCCCCATCCTGATGTTGCCAGACCTCGGAAGATGCAGACACACCCTGGGCAGGCCCTGACTT-GGTGCTGGGACTGCCCAACCTGGCACCCTCCTGGGACACAGAATAGAACT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      190858 143 +    698298 TATGCCTTCTGGAATAAGACAGA-CAAACCCAGCCCCATCCTGATGTTGCCAGACCTCGGAAGATGCAGACACACCCTGGGCAGGCCCTGACTT-GGTGCTGGGACTGCCCAACCTGGCACCCTCCTGGGACACAGAATAGAACT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608377 143 - 121039945 TATGCCTTCTGGAATAAGACAGA-CAAACCCAGCCCCATCCTGATGTTGCCAGACCTCGGAAGATGCAGACACACCCTGGGCAGGCCCTGACTT-GGTGCTGAGACTGCCCAACCGGGCACCCTCCTGGGACACAGAATGGAATT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564692 142 - 180051392 tatgccttCTGGAATAAGACAGA-CAAACCCAG-CCCATCCTGATGTTGCCAGGCCTGGGAAGATGCAGACACACCCTGGGCAGGCCCTGACTT-GGTGCTGGGACTGCCCAACCTGGCACCCTCCTGGGACAAAGAGTGGAACC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298200 142 - 181584905 tatgccttCTGGAATAAGACAGA-CAAACCCAG-CCCATCCTGATGTTGCCAGGCCTGGGAAGATGCAGACACACCCTGGGCAGGCCCTGACTT-GGTGCTGGGACTGCCCAACCTGGCACCCTCCTGGGACAAAGAGTGGAACC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      303856 142 -   1764207 tatgccttCTGGAATAAGACAGA-CAAACCCAG-CCCATCCTGATGTTGCCAGGCCTGGGAAGATGCAGACACACCCTGGGCAGGCCCTGACTT-GGTGCTGGGACTGCCCAACCTGGCACCCTCCTGGGACAAAGAGTGGAACC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309091 142 -  16742782 tatgccttCTGGAATAAGACAGA-CAAACCCAG-CCCATCCTGATGTTGCCAGGCCTGGGAAGATGCAGACACACCCTGGGCAGGCCCTGACTT-GGTGCTGGGACTGCCCAACCTGGCACCCTCCTGGGACAAAGAGTGGAACC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610048 143 -  91010382 tatgccttCTGAAATAAGACAGA-CAAACCCAGCCCCATCCTGATGTTGCCAGGCCTGGGAAGATGCAGACACACCCTGGGCAGGCCCTGACCT-GGTGCTGGGACTGCCCAACCTGGCACCCTCCTGGGACAAAGAGTGGAACC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      206709 142 -    438239 TATGCCTTCTGGAATAAGACAGA-CAAACCCAG-CCCATCCTGATGTTGCCAGGCCTGGGAAGATGCAGACACACCCTGGGCAGGCCCTGACTT-GGTGCTGGGACTGCCCAACCTGGCACCCTCCTTGGACAAAGAGTGGAACC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236141 129 -    514179 TATGCCTTCTGGAATCAGACAGACCAAACCCAGCCCCATCCTGATGTTGCCAGGCCTGGGAAGATGCAGA---------------CCCTGACTT-GGTGCTGGGACTGCCCAACCTGGCACCCTCCTGGGACAAAGAATGGAACC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203896513 143 + 204313951 tatgccttctggaataagacaga-caaacccagccccatcctgatgttgccaggcctcagaagatccagacacaCCCTGGGCAGGCCCTGACTT-GGTGCTGGGACCGCCCCGCCTGGCACCCTCCTGGGACACAGAATGGCACT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16049835 143 +  16417988 TATGCCTTCCGGAATAAGACAGA-CAAACCCAGCCCCATCCTGATGTTGCCAGGCCTCGGAAGATCCAGACACACCCTAGGCAGGCCCTGACTT-GGTGCTGGGACCGCCCCACCTGGCACCCTCCTGGGACACAGAATGGAACT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      137035 142 +    298490 tatgccttctggaataagacaga-caaacccagccccATCCTGATGTTGCCAGGCCTCGG-AGATCCAGACACACCCTAGGCAGGCCCTGACTT-GGTGCTGGGACCGCCCCACCTGGCACCCTCCTGGGACACAGAATGGAACT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25464553 143 -  25620257 TATGCCTTCTGGAATAAGACAGA-CAAACCCCGCCCCATCCTGATGTCGCCAGGCCTCGGAAGATCCAGACACATCCTAGGCAGGCCCTGACTT-GGTGCTGGGACCGCCCCACCTGGCACCCTCCTGGGACACAGAATGGAACT
i aotNan1.NW_018503740v1   I 29 C 0
s otoGar3.GL873745           1911676 132 -   2165740 TATGCCTTTAGTAATAGGA-----TGAGTCCAG-CCCATCC------CACCAGGCCCCTGGAGATGCAGACACACCCT-GACAGGTCCCAACGTGGGTGCCAGACTGGCCCAGCCAGGCATCCTCCTGGGACACAAAATGGGACT
i otoGar3.GL873745         C 0 I 718
e canFam3.chr34             11753957 1564 +  42124431 I

a score=-16676.000000
s hg38.chr5_KI270793v1_alt    112113 1 +    126136 C-
s panTro5.chr5             181378333 1 - 181907262 C-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096476 1 - 183735486 C-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191001 1 +    698298 C-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608520 1 - 121039945 C-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564834 1 - 180051392 T-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298342 1 - 181584905 T-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      303998 1 -   1764207 T-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309233 1 -  16742782 T-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610191 1 -  91010382 T-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      206851 1 -    438239 T-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236270 1 -    514179 T-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203896656 2 + 204313951 TG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16049978 2 +  16417988 CG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      137177 2 +    298490 CG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25464696 2 -  25620257 CG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1911808 718 -   2165740 I
e canFam3.chr34             11753957 1564 +  42124431 I

a score=490847.000000
s hg38.chr5_KI270793v1_alt    112114 45 +    126136 GGGTCACAGGCAGCCAATACCCTTAGCATACCAACCACTTTTAGG
s panTro5.chr5             181378334 45 - 181907262 GGGTCACAGGCAGCCAATACCCTTAGCATACCAACCGCTTTTAGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096477 45 - 183735486 GGGTCACAGGCAGCCAATACCCTTAGCATACCAACCGCTTTTAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191002 45 +    698298 GGGTCACAGGCAGCCAATACCCTTAGCATACCAACTGCTTTTAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608521 45 - 121039945 GGGTCACAGGCAGCCAATACCCTTAGCATACCAACCACTTTTAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564835 45 - 180051392 GGGTCACAGGCAGCCAATACCCTTAGCATGCCAACCACTTTTAGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298343 45 - 181584905 GGGTCACAGGCAGCCAATACCCTTAGCATGCCAACCACTTTTAGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      303999 45 -   1764207 GGGTCACAGGCAGCCAATACCCTTAGCATGCCAACCACTTTTAGG
i macNem1.NW_012012389v1   C 0 I 13
s cerAty1.NW_012009470v1      309234 45 -  16742782 GGGTCACAGGCAGCCAATACCCTTAGCATACCAACCACTTTTAGG
i cerAty1.NW_012009470v1   C 0 I 13
s chlSab2.chr4              90610192 45 -  91010382 GGGTCACAGGCAGCCAATACCCTTAGCATACCAACCACTTTTAGG
i chlSab2.chr4             C 0 I 13
s manLeu1.NW_012110441v1      206852 45 -    438239 GGGTCACAGGCAGCCAATACCCTTAGCATACCAACCACTTTTAGG
i manLeu1.NW_012110441v1   C 0 I 13
s colAng1.NW_012118799v1      236271 45 -    514179 GGGTCACAGGCAGCCAATACCCTTAGCATACCAACCACTTTTAGG
i colAng1.NW_012118799v1   C 0 I 13
s calJac3.chr2             203896658 45 + 204313951 GGGTCACAAGCAGCTAGTACCCTCAGCACACCAGCCACTTTTAGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16049980 45 +  16417988 GGGTCGAAGGCAGCCAATAACCTCAGCACACCAACCACTTTTACG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      137179 45 +    298490 GGGTCGCAGACAGCCAATACCCTCAGCACACCAACCACTTTTAGG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25464698 45 -  25620257 GGGTCGCAGGCAGCCAATACCCTCAGCACACCAACCACTTTTAGC
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11755521 45 +  42124431 GGAGCCCGGGCAATCAGTACCCTGAGCACAGCCCCGGCATTCAGG
i canFam3.chr34            I 1564 C 0
e otoGar3.GL873745           1911808 718 -   2165740 I

a score=77435.000000
s hg38.chr5_KI270793v1_alt    112159 42 +    126136 AGCTTGAATGGTCTCATCC------G-TCTTATCGAGGTAGCC-CAAAAT
s panTro5.chr5             181378379 42 - 181907262 AGCTTGAATGGTCTCATCT------G-TCTTATCGAGGTAGCC-CAAAAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096522 42 - 183735486 AGCTTGAATGGTCTCATCT------G-TCTTATCGAGGTAGCC-CAAAAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191047 42 +    698298 AGCTTGAATGGCCTCATCT------G-TCTTATCGAGGTAGCC-CAAAAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608566 42 - 121039945 AGCTTGAATGGTCTCATCT------A-TCTTATCAAGGTAGCC-CAAAAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564880 13 - 180051392 ----------------TAT------G-TAAAGTCAA--------------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298388 13 - 181584905 ----------------TAT------G-CAAAGTCAA--------------
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203896703 43 + 204313951 AGCTTGAATGGTCTGATTC------ATTTTTGTCAAGGTAGCT-CAAAAT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050025 49 +  16417988 AGCTTGAATGGTCTGATTCTGATTTATTTTTATCAAAGTAGCC-CAAAAT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      137224 43 +    298490 AGCTTGAATGGTCTGATTT------ATTTTTATCAAGGTAGCC-CAAAAT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25464743 43 -  25620257 AGCTTGAACAGTCTGATTT------ATTTTTATCAAGGTAGCC-CAAAAT
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11755566 43 +  42124431 GGCATGACTGGCCCGATTT------C-CTTCCTCAGTGCAGCCGCGAAAC
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1911808 718 -   2165740 I
e manLeu1.NW_012110441v1      206897 13 -    438239 I
e chlSab2.chr4              90610237 13 -  91010382 I
e cerAty1.NW_012009470v1      309279 13 -  16742782 I
e colAng1.NW_012118799v1      236316 13 -    514179 I
e macNem1.NW_012012389v1      304044 13 -   1764207 I

a score=1489768.000000
s hg38.chr5_KI270793v1_alt    112201 154 +    126136 GCTGGACTTTGCAGCAGCCAGCGCTCTGGGCAATGGAGGAGCTCTCTCCAGTTTAATATTCATTCAATAAACA--------TTCAGTGCCCATCACGCCCTGTAGGCAGTGGGGATCCCACTTCAAATGAGACCCAAATATCCCATGGGGCAGCACTCCTGG--------
s panTro5.chr5             181378421 154 - 181907262 GCTGGGCTTTGCAGCACCCAGAGCTCTGGGCAATGGAGGAGCTCTCTCCAGTTTAATattcattcaataaaca--------ttcagtgcctatcacgccctgtaggcagtggggatcccacttcaaatgagacCCAAATATCCCATGGGGCAGCACTCCTGG--------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096564 154 - 183735486 GCTGGGCTTTGCAGCACCCAGAGCTCTGGGCAATGGAGGAGCTCTCTCCAGTTTAATattcattcaataaaca--------ttcagtgcctatcacgccctgtaggcagtggggatcccacttcaaatgagacCCAAATATCCCATGGGGCAGCACTCCTGG--------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191089 154 +    698298 GCTGGACTTTGCAGCACCCAGCGCTCTGGGCAATGGAGGAGCTCTCTCCAGTTTAATattcattcaataaaca--------ttcagtgcccatcacgccctgtaggcagtggggatcccacttcaaatgagacccagATATCCCATGGGGCAGCACTCCTGG--------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608608 154 - 121039945 GCTGGACTTTGCAGCAGCCAGAGCTCTGGGCAATAGAGGAGCTCTCTCCAGTTTAATATTCATTCAATAAACA--------TTCAGTGCCCATCACACCCTGTAGGCAGTGGGGATCCCACTTCAAATGAGACCCAAATATCCCATGGGGCAGCACTCCTGG--------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179564893 154 - 180051392 GCAGGACTCTGCAGCAGCCAGAGCTCTGGGCAATAGAGGAGCGCTCTCCAGTTTAATATTCACTCAATAAACA--------TTCAGTGCCCACCACGCCCTATAGGCAGTGGGGATCCCACTTCAAATGAGACCCAAATATCCCAGGGGGCAGCACTCCTGG--------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298401 154 - 181584905 GCAGGACTCTGCAGCAGCCAGAGCTCTGGGCAATAGAGGAGCGCTCTCCAGTTTAATATTCACTCAATAAACA--------TTCAGTGCCCACCACGCCCTATAGGCAGTGGGGATCCCACTTCAAATGAGACCCAAATATCCCAGGGGGCAGCACTCCCGG--------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      304057 154 -   1764207 GCAGGACTCTGCAGCAGCCAGAGCTCTGGGCAATAGAGGAGCGCTCTCCAGTTTAATATTCACTCAATAAACA--------TTCAGTGCCCACCACGCCCTATAGGCAGTGGGGATCCCACTTCAAATGAGACCCAAATATCCCAGGGGGCAGCACTCCTGG--------
i macNem1.NW_012012389v1   I 13 C 0
s cerAty1.NW_012009470v1      309292 154 -  16742782 GCAGGACTCTGCAGCAGCCAGAGCTCTGGGCAATAGAGGAGCGCTCTCCAGTTTAACATTCACTCAATAAACA--------TTCAGTGCCCACCACGCCCTATAGGCAGTGGGGATCCCACTTCAAATGAGACCCAAATATCCCCGGGGACAGCACTCCTGG--------
i cerAty1.NW_012009470v1   I 13 C 0
s chlSab2.chr4              90610250 154 -  91010382 GCAGGACTCTGCAGCAGCCAGAGCTCTGGGCAATAGAGGAGCGCTCTCCAGTTTAATATTCACTCAATAAACA--------TTCAGTGCCCACCACGCCCTATAGGCAGTGGGGATCCCACTTCAAATGAGACCCAAATATCCCAGGGGGCAGCACTCCTGG--------
i chlSab2.chr4             I 13 C 0
s manLeu1.NW_012110441v1      206910 154 -    438239 GCAGGACATTGCAGCAGCCAGAGCTCTGGGCAATAGAGGAGCGCTCTCCAGTTTAATATTCACTCAATAAACA--------TTCAGTGCCCACCACGCCCTATAGGCAGTGGGGATCCCACTTCAAATGAGACCCAAATATCCCCGGGGGCAGCACTCCTGG--------
i manLeu1.NW_012110441v1   I 13 C 0
s colAng1.NW_012118799v1      236329 154 -    514179 GCAGGACTTTGCAGCAGCCAGAGCTCTGGGCAATAGAGGAGCGCTCTCCAGTTTAATAGTCATTCAATAAACA--------TTCAGTGCCCACCACACCCTGTAGGCAGTGGGGATCCCACTTCAAATGAGACCCAAATATCCCAGGGGGCAGCACTCCTGG--------
i colAng1.NW_012118799v1   I 13 C 0
s calJac3.chr2             203896746 153 + 204313951 GCTTGATTTCTTAGCGTCCAGAGCTCTGGGTAATAGACAAACTGTCTCCAGTTTAATATTCATTCAATGAACA--------TTCAGTGCCCACCGCGCCCTGTAGACAGTGGGGATCCCACCTCAAAGGAGACCCAAATACCCCATGGG-CAGCACTCCTGG--------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050074 153 +  16417988 GCTTGACTTTTTAGCGACCAGAGCTCTGCGTAATAGACAAACTGTCTCCAGTTTAACATTCGTTCAATGAACA--------TTCGGTGCCCACCACGCCCTGTAGGCAGTGGGGATCCCACTTCAAATGAGACCCAAATACCCCACAGG-CAGCACTGCTGG--------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      137267 153 +    298490 GCTTGACTTTTTAGCGACCAGAGCTCTGGGTAATAGACAAACTGTCTCCAGTTTAATATTCATTCAATGAACA--------TTCAGTGCCCACCACGCCCTGTAGACAGTGGGGATCCCACTTCAAATGAGATGCAAATACCCCATGGG-CAGCACTCCTGG--------
i cebCap1.NW_016108158v1   C 0 I 30
s aotNan1.NW_018503740v1    25464786 153 -  25620257 GCTTGACTTTTTAGCGACCAGAGCTCTGGGTAACAGACAAACTGTCTCCAGTTTAACACTCATTCAATGAACA--------TTCAGTGCCCACCACGCCCTGTAGACAGTGGGGATCCCACTTCAAATGAGACCCAAACACCCCATGGG-CAGCACTCCTGG--------
i aotNan1.NW_018503740v1   C 0 I 191
s canFam3.chr34             11755609 152 +  42124431 ATTTGATGTTG-AGCAGCTGCAACTCTGGCTGCTGGAGGAGTGCTCCCCACTTGAGGGCTCATGC-ACAAGCACCACGCAGCCCAGACCCCAACAGTGCC---AGATCCTGGGGGACAGA---CAGATGAGACC-----ACGCCA-----CAGGACCAATGGCATTGTGT
i canFam3.chr34            C 0 C 0
e otoGar3.GL873745           1911808 718 -   2165740 I

a score=213580.000000
s hg38.chr5_KI270793v1_alt    112355 32 +    126136 G----CACCAAGGACCAAAGACAGTCAGGAAGCCAT
s panTro5.chr5             181378575 36 - 181907262 GAGGACACCAAGGACCAAAGACAGTCAGGAAGCCAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096718 36 - 183735486 GAGGACACCAAGGACCAAAGACAGTCAGGAAGCCAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191243 36 +    698298 GAGGACACCAAGGACCAAAGACAGTCAGGAAGCCAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608762 36 - 121039945 GAGGACACCAAGGACCAAAGACAGTCAGGAAGCCAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565047 36 - 180051392 GAGGACACCAAGGACCAAAGACAGCCAGGAAGCCAT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298555 36 - 181584905 GAGGACACCAAGGACCAAAGACAGCCAGGAAGCCAT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      304211 36 -   1764207 GAGGACACCAAGGACCAAAGACAGCCAGGAAGCCAT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309446 36 -  16742782 GAGGACACCAAGGACCAAAGACAGCCAAGAAGCCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610404 36 -  91010382 GAGGACACCAAGGACCAAAGACAGCCAAGAAGCCAT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207064 36 -    438239 GAGGACACCAAGGACCAAAGACAGCCAAGAAGCCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236483 36 -    514179 GAGGACACCAAGGACCAAAGACAGCCAGGAAGCCAT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203896899 25 + 204313951 AAGGA-------GACAAA----AGACAGGAAGTCAG
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16050227 29 +  16417988 AAGGA-------GACAAAAGACAGACAGGAAGTCAA
i saiBol1.JH378155         C 0 I 1
s canFam3.chr34             11755761 13 +  42124431 ----GCTCCACAGAACA-------------------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137420 30 +    298490 I

a score=206712.000000
s hg38.chr5_KI270793v1_alt    112387 36 +    126136 CCCTGGGGCAGAGGGGGCAGC--CAGCCCTGTGGGTTA
s panTro5.chr5             181378611 36 - 181907262 CCCTGGGGCAGAGGGGTCAGC--CAGCCGTGTGGGTTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096754 36 - 183735486 CCCTGGGGCAGAGGGGTCAGC--CAGCCGTGTGGGTTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191279 36 +    698298 CCCTGGGGCAGAGGGGGCAGC--CAGCCCTGTGGGTTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608798 36 - 121039945 CCCTGGGGCAGAGGGGGCAGC--CAGCCCTGTGGGTTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565083 36 - 180051392 CCCTGGGGCGGAGCGG-CAGCCACagccctgtgggtt-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298591 36 - 181584905 CCCTGGGGCGGAGCGG-CAGCCACagccctgtgggtt-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      304247 36 -   1764207 CCCTGGGGCGGAGCGG-CAGCCACAGCCCTGTGGGTT-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309482 36 -  16742782 CCGTGGGGCGGAGCAG-CAGCCACAGCGCTGTGGGGT-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610440 34 -  91010382 CCCTGGGGCAGAGCGG-CAGC--CAGCCCTGTGGGTT-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207100 36 -    438239 CCCTGGGGCGGAGCGG-CAGCCACAGCGCTGTGGGGT-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236519 34 -    514179 CCCaggagcagcgcgg-cagc--cagccctgtgggtt-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203896925 35 + 204313951 CCCTGGGTCAGAGGGAACAGT--CAGCCCTGTGGGTT-
i calJac3.chr2             I 1 I 2
s saiBol1.JH378155          16050257 35 +  16417988 CCCTGGGTCAGAGGGAACAGT--CAGCCCTGTGGGTT-
i saiBol1.JH378155         I 1 I 2
s cebCap1.NW_016108158v1      137450 35 +    298490 CCCTGGGTCAGAGGGAACAGT--CAGCCCTGTGGGTT-
i cebCap1.NW_016108158v1   I 30 I 123
s canFam3.chr34             11755774 18 +  42124431 -------GCAAATGGGGCAGG--CAGA-----------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I

a score=33633.000000
s hg38.chr5_KI270793v1_alt    112423 5 +    126136 GGGGG
s panTro5.chr5             181378647 5 - 181907262 GGGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096790 5 - 183735486 GGGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191315 5 +    698298 GGGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608834 5 - 121039945 GGGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565119 5 - 180051392 ggggg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298627 5 - 181584905 ggggg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      304283 5 -   1764207 GGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309518 5 -  16742782 GGGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610474 5 -  91010382 GGGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207136 5 -    438239 GGGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236553 5 -    514179 ggggg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203896962 4 + 204313951 GGGA-
i calJac3.chr2             I 2 C 0
s saiBol1.JH378155          16050294 4 +  16417988 GGGA-
i saiBol1.JH378155         I 2 I 1
s canFam3.chr34             11755792 5 +  42124431 GGGGA
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I

a score=315907.000000
s hg38.chr5_KI270793v1_alt    112428 54 +    126136 ---AAGCATGTCCAGGGAAGGGATAGCCAGAGCGAAGTGCCCGAGGCAAAAAGTGTG--
s panTro5.chr5             181378652 54 - 181907262 ---AAGCATGTCCAGGGAAGGGATAGCCAGAGCGAAGTGCCTGAGGCAAAAAGTGTG--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096795 53 - 183735486 ---AAGCATGTCCAGGGAAGGGATAGCCAGAGCGAAGTGCCTGAGGC-AAAAGTGTG--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191320 54 +    698298 ---AAGCATGTCCAGGGAAGGGATAGCCAGAGTGAAGTGCCCAAGGCAAAAAGTGTG--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608839 54 - 121039945 ---AAGCATGTTCAGGGAAGGAATAGCCAGAGCAAAGTGCCTGAGGCAAAAAGTGTG--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565124 54 - 180051392 ---aagcatgttcagggaaggaatagccagagtcaagtgcctgaggcaacaagtgtg--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298632 54 - 181584905 ---aagcatgttcagggaaggaatagccagagtcaagtgcctgaggcaacaagtgtg--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      304288 54 -   1764207 ---AAGCATGTTCAGGGAAGGAATAGCCAGAGTCAAGTGCCTGAGGCAACAAGTGTG--
i macNem1.NW_012012389v1   C 0 I 284
s cerAty1.NW_012009470v1      309523 54 -  16742782 ---AAGCATGTTCAGGGAAGGAACAGCCAGAGTCAAGCGCCTGAGGCAAAAAGTGTG--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610479 54 -  91010382 ---AAGCATGTTCAGGGAAGGAATAGCCAGAGTCAAGTGCCTGAGGCAAAAAGTGTG--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207141 53 -    438239 ---AAGCGTGTTCAGGGAAGGAAGAGCCAGAGTCAAGTGCCTGAGG-GAAAAGTGTG--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236558 54 -    514179 ---aagcatgttcagggaaggaatagccagagtcaagtgcctgaggcaaaaagtgtg--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203896966 44 + 204313951 ------------CAGGGCAGGAATAGCCAGGGC-GAGTCCCTGAGGCAGCAAGCGTG--
i calJac3.chr2             C 0 C 0
s canFam3.chr34             11755797 54 +  42124431 AGGGGCCATTTTCAGGAGTGGATCAGCCTGTGCAAAGGCACCAAGgt-----gtgtgtg
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I

a score=12330.000000
s hg38.chr5_KI270793v1_alt    112482 2 +    126136 GA
s panTro5.chr5             181378706 2 - 181907262 GA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096848 2 - 183735486 GA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191374 2 +    698298 GA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608893 2 - 121039945 GA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565178 2 - 180051392 GA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298686 2 - 181584905 GA
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      309577 2 -  16742782 GA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610533 2 -  91010382 GA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207194 2 -    438239 GA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236612 2 -    514179 GA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897010 2 + 204313951 GA
i calJac3.chr2             C 0 C 0
s canFam3.chr34             11755851 2 +  42124431 ta
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e macNem1.NW_012012389v1      304342 284 -   1764207 I

a score=30989.000000
s hg38.chr5_KI270793v1_alt    112484  9 +    126136 T-GAGGGTTA
s panTro5.chr5             181378708  9 - 181907262 T-GAGGGTTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096850 10 - 183735486 TGGAGGGTTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191376  9 +    698298 T-GAGGGTTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608895  9 - 121039945 T-GAGGGCCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565180  9 - 180051392 T-GAGGGTCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181298688  9 - 181584905 T-GAGGGTCA
i macFas5.chr6             C 0 I 514
s cerAty1.NW_012009470v1      309579  9 -  16742782 T-GAGGGTCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610535  9 -  91010382 T-GAGGGTCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207196  9 -    438239 T-GAGGGTCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236614  9 -    514179 T-GAGGGTCA
i colAng1.NW_012118799v1   C 0 C 0
s canFam3.chr34             11755853  1 +  42124431 t---------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e macNem1.NW_012012389v1      304342 284 -   1764207 I

a score=12210.000000
s hg38.chr5_KI270793v1_alt    112493 4 +    126136 GGGG
s panTro5.chr5             181378717 4 - 181907262 GGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096860 4 - 183735486 GGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191385 4 +    698298 GGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608904 4 - 121039945 GGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565189 2 - 180051392 --GG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299211 2 - 181584905 --gg
i macFas5.chr6             I 514 C 0
s cerAty1.NW_012009470v1      309588 2 -  16742782 --GA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610544 4 -  91010382 GGGG
i chlSab2.chr4             C 0 I 120
s manLeu1.NW_012110441v1      207205 4 -    438239 GGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236623 2 -    514179 --GG
i colAng1.NW_012118799v1   C 0 I 2
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e canFam3.chr34             11755854 0 +  42124431 C
e macNem1.NW_012012389v1      304342 284 -   1764207 I

a score=9082.000000
s hg38.chr5_KI270793v1_alt    112497 5 +    126136 GAGAG
s panTro5.chr5             181378721 5 - 181907262 GAGAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183096864 5 - 183735486 GAGAg
i panPan2.chr5             C 0 I 611
s gorGor5.CYUI01015805v1      191389 5 +    698298 GAGAG
i gorGor5.CYUI01015805v1   C 0 I 4
s nomLeu3.chr6             120608908 3 - 121039945 GAG--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565191 5 - 180051392 GGGAg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299213 5 - 181584905 gggag
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      309590 5 -  16742782 GGGAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610668 5 -  91010382 GAGAG
i chlSab2.chr4             I 120 C 0
s manLeu1.NW_012110441v1      207209 3 -    438239 --GAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236627 3 -    514179 --GAG
i colAng1.NW_012118799v1   I 2 C 0
s canFam3.chr34             11755854 1 +  42124431 --g--
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e macNem1.NW_012012389v1      304342 284 -   1764207 I

a score=16478.000000
s hg38.chr5_KI270793v1_alt    112502 7 +    126136 TGTGTGT
s panTro5.chr5             181378726 7 - 181907262 TGTGTGT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191398 7 +    698298 TGTGTGT
i gorGor5.CYUI01015805v1   I 4 C 0
s nomLeu3.chr6             120608911 7 - 121039945 TGTGAGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565196 3 - 180051392 tgt----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299218 7 - 181584905 tgtgtga
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      309595 3 -  16742782 TGT----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610673 7 -  91010382 TGTGTGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207212 7 -    438239 TGTGTGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236630 7 -    514179 TGTGTGT
i colAng1.NW_012118799v1   C 0 I 2
s canFam3.chr34             11755855 7 +  42124431 tgtgtgt
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e macNem1.NW_012012389v1      304342 284 -   1764207 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=6600.000000
s hg38.chr5_KI270793v1_alt    112509 1 +    126136 G
s panTro5.chr5             181378733 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191405 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608918 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565199 1 - 180051392 g
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299225 1 - 181584905 g
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      304626 1 -   1764207 G
i macNem1.NW_012012389v1   I 284 C 0
s cerAty1.NW_012009470v1      309598 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610680 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207219 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236639 1 -    514179 G
i colAng1.NW_012118799v1   I 2 I 16
s canFam3.chr34             11755862 1 +  42124431 g
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e panPan2.chr5             183096869 611 - 183735486 I

a score=69280.000000
s hg38.chr5_KI270793v1_alt    112510 31 +    126136 TGTGT----------G-AGGGGCAGGG---------------GGAGTGTGTGTGTGT
s panTro5.chr5             181378734 31 - 181907262 TGTGT----------G-AGGGGCAGGG---------------GGAGTGTGTGTGTGT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191406 56 +    698298 TGTGTGAGGGCAGGGG-AGGGGCGGGGGAgtgtggtgtgtgtggtgtgtgtgtgtgt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608919 21 - 121039945 TGTGT----------G-AGGGGCAGGG---------------GGAGT----------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565200 31 - 180051392 tgtgt----------g-agggccgggg---------------ggagtgtgtgtgtgt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299226 31 - 181584905 tgtgt----------g-agggctgggg---------------tgtgtgtgtgtgtgt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      304627 31 -   1764207 TGTGT----------G-AGGGCCGGGG---------------GGAGTGTGTGTGTGT
i macNem1.NW_012012389v1   C 0 I 19
s cerAty1.NW_012009470v1      309599 31 -  16742782 TGTGT----------G-AGGGCCGGGG---------------GGAGTGTGTGAGTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610681 32 -  91010382 TGTGT----------GAGGGGCAGGGT---------------GGAGTGTGTGTGTGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207220 27 -    438239 TG---------------AGGGCCGGGG---------------GGAGTGTGTGTGTGA
i manLeu1.NW_012110441v1   C 0 C 0
s canFam3.chr34             11755863 31 +  42124431 tgtCT----------G-AGGAGCAGCG---------------GTGGGGGAAGTCAGC
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e colAng1.NW_012118799v1      236640 16 -    514179 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=2711.000000
s hg38.chr5_KI270793v1_alt    112541 3 +    126136 GAG
s panTro5.chr5             181378765 3 - 181907262 GTG
i panTro5.chr5             C 0 I 2
s gorGor5.CYUI01015805v1      191462 3 +    698298 gAG
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179565231 1 - 180051392 --g
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181299257 1 - 181584905 --g
i macFas5.chr6             C 0 I 1
s cerAty1.NW_012009470v1      309630 1 -  16742782 --G
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90610713 3 -  91010382 GAG
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      207247 3 -    438239 GGG
i manLeu1.NW_012110441v1   C 0 I 1
s canFam3.chr34             11755894 3 +  42124431 CAG
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e nomLeu3.chr6             120608940 0 - 121039945 C
e colAng1.NW_012118799v1      236640 16 -    514179 I
e macNem1.NW_012012389v1      304658 19 -   1764207 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=3815.000000
s hg38.chr5_KI270793v1_alt    112544 4 +    126136 GGGG
s gorGor5.CYUI01015805v1      191465 3 +    698298 GGG-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179565233 3 - 180051392 ggg-
i rheMac8.chr6             I 1 I 223
s macFas5.chr6             181299259 3 - 181584905 ggg-
i macFas5.chr6             I 1 I 2
s cerAty1.NW_012009470v1      309632 3 -  16742782 GGG-
i cerAty1.NW_012009470v1   I 1 I 4
s chlSab2.chr4              90610717 3 -  91010382 GGG-
i chlSab2.chr4             I 1 I 2
s manLeu1.NW_012110441v1      207251 3 -    438239 CGG-
i manLeu1.NW_012110441v1   I 1 I 1
s canFam3.chr34             11755897 3 +  42124431 GGG-
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181378768 2 - 181907262 I
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e nomLeu3.chr6             120608940 0 - 121039945 C
e colAng1.NW_012118799v1      236640 16 -    514179 I
e macNem1.NW_012012389v1      304658 19 -   1764207 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=9200.000000
s hg38.chr5_KI270793v1_alt    112548 8 +    126136 CAGGGGGA
s gorGor5.CYUI01015805v1      191468 8 +    698298 CAGGGGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179565459 7 - 180051392 -ggggagt
i rheMac8.chr6             I 223 C 0
s macFas5.chr6             181299264 7 - 181584905 -ggggggg
i macFas5.chr6             I 2 I 1
s cerAty1.NW_012009470v1      309639 7 -  16742782 -GAGGGGG
i cerAty1.NW_012009470v1   I 4 I 1
s chlSab2.chr4              90610722 7 -  91010382 -AGGGGGA
i chlSab2.chr4             I 2 C 0
s manLeu1.NW_012110441v1      207255 7 -    438239 -GGGTGGG
i manLeu1.NW_012110441v1   I 1 C 0
s canFam3.chr34             11755900 7 +  42124431 -AGGGGTA
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181378768 2 - 181907262 I
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e nomLeu3.chr6             120608940 0 - 121039945 C
e colAng1.NW_012118799v1      236640 16 -    514179 I
e macNem1.NW_012012389v1      304658 19 -   1764207 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=65611.000000
s hg38.chr5_KI270793v1_alt    112556 21 +    126136 GTGTGTGTG----TGTGAGG---GGCAG
s gorGor5.CYUI01015805v1      191476 25 +    698298 GTGTGTGTTGTGTTGTGAGG---GGCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608940 21 - 121039945 GTGTGTGTG----TGTGAGG---GGCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565466 21 - 180051392 gtgtgtgtg----tgtgagg---gccgg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299272 21 - 181584905 gtgtgtgtg----tgtgagg---gccgg
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      304677 21 -   1764207 GTGTGTGTG----TGTGAGG---GCCGG
i macNem1.NW_012012389v1   I 19 C 0
s cerAty1.NW_012009470v1      309647 19 -  16742782 --GTGTGTG----TGTGAGG---GCCGG
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90610729 21 -  91010382 GTGTGTGTG----TGTGAGG---GGTAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207262 24 -    438239 GTGTGTGTG----TGTGAGGGCCGGGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      236656 21 -    514179 GTGTGTGTG----TGTGAGG---GGCAG
i colAng1.NW_012118799v1   I 16 M 390
s canFam3.chr34             11755907 21 +  42124431 GAAGGGAGG----TCAGAGG---GGCCA
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181378768  2 - 181907262 I
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e panPan2.chr5             183096869 611 - 183735486 I

a score=17614.000000
s hg38.chr5_KI270793v1_alt    112577 16 +    126136 GGGGAGTGTGTGTGTG-
s gorGor5.CYUI01015805v1      191501 15 +    698298 GGG-AGTGTGTGTGTG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608961 16 - 121039945 GGGTTGTGTGTGTGTG-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565487 16 - 180051392 ggggagtgtgtgagtg-
i rheMac8.chr6             C 0 I 2
s macFas5.chr6             181299293 16 - 181584905 ggggagtgtgtgagtg-
i macFas5.chr6             C 0 I 2
s macNem1.NW_012012389v1      304698 16 -   1764207 GGGGAGTGTGTGTGTG-
i macNem1.NW_012012389v1   C 0 I 288
s cerAty1.NW_012009470v1      309666  4 -  16742782 GGTG-------------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610750 16 -  91010382 GCGGAGTGTGTGTGTG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207286 16 -    438239 GTGGGGTGTGTGTGTG-
i manLeu1.NW_012110441v1   C 0 C 0
s canFam3.chr34             11755928 16 +  42124431 -GGAAGGCAACCAGTCA
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181378768  2 - 181907262 I
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e colAng1.NW_012118799v1      236677 390 -    514179 M
e panPan2.chr5             183096869 611 - 183735486 I

a score=5348.000000
s hg38.chr5_KI270793v1_alt    112593 2 +    126136 TG
s gorGor5.CYUI01015805v1      191516 2 +    698298 TG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608977 2 - 121039945 TG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565505 2 - 180051392 tg
i rheMac8.chr6             I 2 C 0
s macFas5.chr6             181299311 2 - 181584905 tg
i macFas5.chr6             I 2 C 0
s chlSab2.chr4              90610766 2 -  91010382 TG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207302 2 -    438239 TG
i manLeu1.NW_012110441v1   C 0 C 0
s canFam3.chr34             11755944 2 +  42124431 TG
i canFam3.chr34            C 0 C 0
e panTro5.chr5             181378768 2 - 181907262 I
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e cerAty1.NW_012009470v1      309670 0 -  16742782 C
e colAng1.NW_012118799v1      236677 390 -    514179 M
e macNem1.NW_012012389v1      304714 288 -   1764207 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=18830.000000
s hg38.chr5_KI270793v1_alt    112595 13 +    126136 AGGGGCAGGGGGA
s panTro5.chr5             181378770 13 - 181907262 AGGGGCAGGGGGA
i panTro5.chr5             I 2 C 0
s gorGor5.CYUI01015805v1      191518 13 +    698298 AGGGGCAGGGGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608979 13 - 121039945 AGGGGCAGGGGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565507 12 - 180051392 agggccgggggg-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299313 10 - 181584905 agggctgggg---
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      309670  4 -  16742782 -----TGGG----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610768 13 -  91010382 AGGGGTAGGGGGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207304 13 -    438239 AGGGCCGGGGGGA
i manLeu1.NW_012110441v1   C 0 C 0
s canFam3.chr34             11755946 13 +  42124431 AGGGTCACAAGGA
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e colAng1.NW_012118799v1      236677 390 -    514179 M
e macNem1.NW_012012389v1      304714 288 -   1764207 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=1500.000000
s hg38.chr5_KI270793v1_alt    112608 1 +    126136 G
s panTro5.chr5             181378783 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191531 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608992 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s macNem1.NW_012012389v1      305002 1 -   1764207 G
i macNem1.NW_012012389v1   I 288 C 0
s canFam3.chr34             11755959 1 +  42124431 G
i canFam3.chr34            C 0 I 402
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e manLeu1.NW_012110441v1      207317 0 -    438239 C
e chlSab2.chr4              90610781 0 -  91010382 C
e cerAty1.NW_012009470v1      309674 0 -  16742782 C
e colAng1.NW_012118799v1      236677 390 -    514179 M
e macFas5.chr6             181299323 0 - 181584905 C
e rheMac8.chr6             179565519 0 - 180051392 C
e panPan2.chr5             183096869 611 - 183735486 I

a score=43917.000000
s hg38.chr5_KI270793v1_alt    112609 15 +    126136 TGTGTG---------------TGTGTGTGT
s panTro5.chr5             181378784 15 - 181907262 TGTGTG---------------TGTGTGTGT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191532 30 +    698298 TGTGTGTGTGTGGTGGGGGGTTGTGTGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608993 15 - 121039945 TGTGTG---------------TGTGTGTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565519 15 - 180051392 tgtgtg---------------tgtgtgtgt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299323 15 - 181584905 tgtgtg---------------tgtgtgtgt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305003 15 -   1764207 TGTGTG---------------TGTGTGTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309674 10 -  16742782 -----G---------------TGTGTGTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610781 12 -  91010382 ---GTG---------------TGTGTGTGT
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      207317 12 -    438239 ---GCg---------------tgtgtgtgt
i manLeu1.NW_012110441v1   C 0 I 57
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e colAng1.NW_012118799v1      236677 390 -    514179 M
e panPan2.chr5             183096869 611 - 183735486 I

a score=30992.000000
s hg38.chr5_KI270793v1_alt    112624 14 +    126136 GAGGGGCAGGGGGA
s panTro5.chr5             181378799 14 - 181907262 GAGGGGCAGGGGGA
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191562 14 +    698298 GAGGGGCAGGGGGA
i gorGor5.CYUI01015805v1   C 0 I 4
s nomLeu3.chr6             120609008 14 - 121039945 GAGGGGCAGGGGGA
i nomLeu3.chr6             C 0 T 69
s rheMac8.chr6             179565534 14 - 180051392 gagggccggggggt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299338 14 - 181584905 gagggccggggggg
i macFas5.chr6             C 0 I 1
s macNem1.NW_012012389v1      305018 14 -   1764207 GAGGGCCTGGGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309684 14 -  16742782 GAGGGCCAGGGGGT
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90610794 10 -  91010382 -AGGGGCAGGG---
i chlSab2.chr4             I 1 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e manLeu1.NW_012110441v1      207329 57 -    438239 I
e colAng1.NW_012118799v1      236677 390 -    514179 M
e panPan2.chr5             183096869 611 - 183735486 I

a score=23338.000000
s hg38.chr5_KI270793v1_alt    112638 13 +    126136 GTGTGTGTGTGTG
s panTro5.chr5             181378813 13 - 181907262 GTGTGTGTGTGTG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191580 13 +    698298 GTGTGTGTGTGTG
i gorGor5.CYUI01015805v1   I 4 C 0
s rheMac8.chr6             179565548 13 - 180051392 gtgtgtgtgtgtg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299353 13 - 181584905 gtgtgtgtgtgtg
i macFas5.chr6             I 1 C 0
s macNem1.NW_012012389v1      305032 12 -   1764207 GTGTGTGTGT-TG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309699 13 -  16742782 GGGTGTGTGTGTG
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90610804 10 -  91010382 GTGAGTGTGT---
i chlSab2.chr4             C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e nomLeu3.chr6             120609022 69 - 121039945 T
e manLeu1.NW_012110441v1      207329 57 -    438239 I
e colAng1.NW_012118799v1      236677 390 -    514179 M
e panPan2.chr5             183096869 611 - 183735486 I

a score=24194.000000
s hg38.chr5_KI270793v1_alt    112651 17 +    126136 AGGGGCAGGGGGAGAGT
s panTro5.chr5             181378826 17 - 181907262 AGGGGCAGGGGGACCGT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191593 17 +    698298 AGGGGCAGGGGGAGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608953 17 - 121039945 AGGGGCAGGGGTTGTGT
i nomLeu3.chr6             T 69 C 0
s rheMac8.chr6             179565561 16 - 180051392 agggccggggggg-agt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299366 17 - 181584905 agggccggggggagtgt
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305044 14 -   1764207 AGGGCCGGGGGGA---T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309712 17 -  16742782 AGGGCTGGGGGGAGTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610814  8 -  91010382 ---------GAGAGTGT
i chlSab2.chr4             C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e manLeu1.NW_012110441v1      207329 57 -    438239 I
e colAng1.NW_012118799v1      236677 390 -    514179 M
e panPan2.chr5             183096869 611 - 183735486 I

a score=9619.000000
s hg38.chr5_KI270793v1_alt    112668 4 +    126136 GTGT
s panTro5.chr5             181378843 4 - 181907262 GTGT
i panTro5.chr5             C 0 T 77
s gorGor5.CYUI01015805v1      191610 4 +    698298 GTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608970 2 - 121039945 GT--
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565577 4 - 180051392 gtgt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299383 4 - 181584905 gtga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305058 4 -   1764207 GTGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309729 4 -  16742782 GTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610822 4 -  91010382 GTGT
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      237068 4 -    514179 GTGT
i colAng1.NW_012118799v1   M 390 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e manLeu1.NW_012110441v1      207329 57 -    438239 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=30784.000000
s hg38.chr5_KI270793v1_alt    112672 10 +    126136 GTGTGTG---AGG
s gorGor5.CYUI01015805v1      191614 13 +    698298 GTGTGTGGTGAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608972 10 - 121039945 GTGTGTG---AGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565581 10 - 180051392 gtgtgtg---agg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299387 10 - 181584905 gtgtgtg---agg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305062 10 -   1764207 GTGTGTG---AGG
i macNem1.NW_012012389v1   C 0 I 389
s cerAty1.NW_012009470v1      309733 10 -  16742782 GTGTGTG---AGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610826 10 -  91010382 GTGTGTG---AGG
i chlSab2.chr4             C 0 C 0
s colAng1.NW_012118799v1      237072 10 -    514179 GTGTGTG---AGG
i colAng1.NW_012118799v1   C 0 C 0
e panTro5.chr5             181378847 77 - 181907262 T
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e manLeu1.NW_012110441v1      207329 57 -    438239 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=8724.000000
s hg38.chr5_KI270793v1_alt    112682 6 +    126136 GGCAGG
s gorGor5.CYUI01015805v1      191627 6 +    698298 GGCAGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608982 6 - 121039945 GGCAGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565591 6 - 180051392 ggcagg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299397 6 - 181584905 gctggg
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      309743 6 -  16742782 GCCGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610836 2 -  91010382 ----GG
i chlSab2.chr4             C 0 I 65
s colAng1.NW_012118799v1      237082 6 -    514179 GGCAGG
i colAng1.NW_012118799v1   C 0 C 0
e panTro5.chr5             181378847 77 - 181907262 T
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e manLeu1.NW_012110441v1      207329 57 -    438239 I
e macNem1.NW_012012389v1      305072 389 -   1764207 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=13841.000000
s hg38.chr5_KI270793v1_alt    112688 10 +    126136 GGGAGAGTGT
s gorGor5.CYUI01015805v1      191633 10 +    698298 GGGAGTGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608988 10 - 121039945 GGGAGTGTGT
i nomLeu3.chr6             C 0 T 110
s rheMac8.chr6             179565597  8 - 180051392 --gggagtgt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299403  8 - 181584905 --gtgtgtgt
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      309749  8 -  16742782 --GGGAATGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90610903 10 -  91010382 GGGGGAGTGT
i chlSab2.chr4             I 65 C 0
s manLeu1.NW_012110441v1      207386  4 -    438239 ------gtgt
i manLeu1.NW_012110441v1   I 57 C 0
s colAng1.NW_012118799v1      237088  8 -    514179 --GGAAGTGT
i colAng1.NW_012118799v1   C 0 C 0
e panTro5.chr5             181378847 77 - 181907262 T
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e macNem1.NW_012012389v1      305072 389 -   1764207 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=4011.000000
s hg38.chr5_KI270793v1_alt    112698 2 +    126136 GT
s gorGor5.CYUI01015805v1      191643 2 +    698298 GT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608888 2 - 121039945 GT
i nomLeu3.chr6             T 110 C 0
s macFas5.chr6             181299411 2 - 181584905 gt
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      309757 2 -  16742782 GT
i cerAty1.NW_012009470v1   C 0 I 2
s chlSab2.chr4              90610913 2 -  91010382 GT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207390 2 -    438239 gt
i manLeu1.NW_012110441v1   C 0 C 0
e panTro5.chr5             181378847 77 - 181907262 T
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e calJac3.chr2             203897012 0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e colAng1.NW_012118799v1      237096 0 -    514179 C
e macNem1.NW_012012389v1      305072 389 -   1764207 I
e rheMac8.chr6             179565605 0 - 180051392 C
e panPan2.chr5             183096869 611 - 183735486 I

a score=86533.000000
s hg38.chr5_KI270793v1_alt    112700 33 +    126136 GTGTGTGAGGGGCAGGGG------GAGTGTGTGTGTGTG
s gorGor5.CYUI01015805v1      191645 31 +    698298 GTGTGTGAGGGGCAGGGG------GAGTGTGTGTGTG--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608890 33 - 121039945 GTGGATGAGGGCCGGGGG------GAGTGTGAGTGTGTG
i nomLeu3.chr6             C 0 I 2
s rheMac8.chr6             179565605 39 - 180051392 gtgtgtgaggggtagggggagtgtgtgtgtgtgtgtgtg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299413 34 - 181584905 gtgtgtga-gggccgggggg----gagtgtgtgtgtgtg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305461 35 -   1764207 GTGTGTGAGGGGCAGGGGGA----GTGTGTGTGTGTGTG
i macNem1.NW_012012389v1   I 389 C 0
s cerAty1.NW_012009470v1      309761 34 -  16742782 GTGTGTGAGGGGCAGGGTT-----GTGCATGGGTGTGTG
i cerAty1.NW_012009470v1   I 2 C 0
s chlSab2.chr4              90610915 33 -  91010382 GTGTGTGAGGGGTAGGCG------GAGTGTGTGTGTGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207392 33 -    438239 gtgtgtgAGGGGTAGGGG------GAGTGTGTGTGTGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237096 31 -    514179 GTGTGTGAGGGGCAGG--------GGAAGTGTGTGTGTG
i colAng1.NW_012118799v1   C 0 C 0
e panTro5.chr5             181378847 77 - 181907262 T
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=104060.000000
s hg38.chr5_KI270793v1_alt    112733 28 +    126136 AGGGGCAGGGGGAGTGTGTGTGTGTGTG
s panTro5.chr5             181378770 28 - 181907262 AGGGGCAGGGGGAGTGTGTGTGTGTGTG
i panTro5.chr5             T 77 I 2
s gorGor5.CYUI01015805v1      191676 27 +    698298 -AGGGCAGGGGGAGTGTGTGTGTGTGAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608925 28 - 121039945 AGGGGCAGGGGGAGTGTGTGTGTGTGTG
i nomLeu3.chr6             I 2 C 0
s rheMac8.chr6             179565644 28 - 180051392 aggggtagggggagtgtgtgtgtgaggg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299447 28 - 181584905 aggggcagggggagtgtgtgtgtgtgtg
i macFas5.chr6             C 0 I 3
s macNem1.NW_012012389v1      305496 28 -   1764207 AGGGGTAGGGGGAGTGTGTGTGTGAGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309795 28 -  16742782 AGGGGCAGGGGGAGTGTGAGTGTGTGTG
i cerAty1.NW_012009470v1   C 0 I 3
s chlSab2.chr4              90610948 28 -  91010382 AGGGGCAGGGGGAGTGTGTGTGTGTGAG
i chlSab2.chr4             C 0 I 240
s manLeu1.NW_012110441v1      207425 19 -    438239 AGGGCCGGGGGGAGCGTGT---------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237127 28 -    514179 AGGGGCAGGGGTTGTGCATGGGTGTGTA
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=70340.000000
s hg38.chr5_KI270793v1_alt    112761 43 +    126136 AGGGGCAGGGGG---AGTGTGT----GTGTGTGAGGGGCAGGGGGA--------GTGT
s panTro5.chr5             181378800 43 - 181907262 AGGGGCAGGGGG---AGTGTGT----GTGTGTGAGGGGCAGGGGGA--------CCGT
i panTro5.chr5             I 2 C 0
s gorGor5.CYUI01015805v1      191703 42 +    698298 ---GGCAGGCGGTAATGTATGG----GTGTTTCAGGAGCAGCGGG---------GTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120608953 43 - 121039945 AGGGGCAGGGGT---TGTGTGT----GTGTGTGAGGGGCAGGGGGA--------GTGT
i nomLeu3.chr6             C 0 I 26
s rheMac8.chr6             179565672 36 - 180051392 ----gtaggggg---agtgtgt----gtgtgagagtggc-ggggga--------gt--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299478 38 - 181584905 g-gggtaggggg---agtgtgt----gtgt--gagtggtaggggga--------gt--
i macFas5.chr6             I 3 C 0
s macNem1.NW_012012389v1      305524 31 -   1764207 -------GCGGG---GGAGTGT----GTGT--GAGTGGC-GGGGGA--------GT--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309826 39 -  16742782 GAGGGGCAGGGG---AGTGTGT----GTGT--GAGGGGTAGGGGGA--------GT--
i cerAty1.NW_012009470v1   I 3 C 0
s chlSab2.chr4              90611216 49 -  91010382 AGGGGTAGGGGG---AGTGTGT----GTGTATGAGGGGCAGGAGGAGTGTGTGTGT--
i chlSab2.chr4             I 240 C 0
s manLeu1.NW_012110441v1      207444 28 -    438239 ----------------GTGTGT----GTGTGTGAGGGGTAGGGGGA--------GT--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237155 45 -    514179 AGTGGCAGGGGG---AGTGTGTGCGGGTGTGTGAGTGGCAGGGGGA--------GT--
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=42320.000000
s hg38.chr5_KI270793v1_alt    112804  9 +    126136 GTGT----GTGTG
s panTro5.chr5             181378843  9 - 181907262 GTGT----GTGTG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191745  9 +    698298 GTGT----GTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609022  9 - 121039945 GTGT----GTGTG
i nomLeu3.chr6             I 26 C 0
s rheMac8.chr6             179565708  9 - 180051392 gtgt----gtgtg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299516  9 - 181584905 gtgt----gtgtg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305555  9 -   1764207 GTGT----GTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309865  9 -  16742782 GTGT----GTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611265  9 -  91010382 GTGT----GTGTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207472  9 -    438239 GTGT----GTGTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237200 13 -    514179 GTGTGCGGGTGTG
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298  1 +  16417988 I
e calJac3.chr2             203897012  0 + 204313951 C
e canFam3.chr34             11755960 402 +  42124431 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=11264.000000
s hg38.chr5_KI270793v1_alt    112813 2 +    126136 TG
s panTro5.chr5             181378852 2 - 181907262 TG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191754 2 +    698298 TG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609031 2 - 121039945 TG
i nomLeu3.chr6             C 0 I 61
s rheMac8.chr6             179565717 2 - 180051392 tg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299525 2 - 181584905 tg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305564 2 -   1764207 TG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309874 2 -  16742782 TG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611274 2 -  91010382 TG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207481 2 -    438239 TG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237213 2 -    514179 TG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897012 2 + 204313951 CG
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e canFam3.chr34             11755960 402 +  42124431 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=6006.000000
s hg38.chr5_KI270793v1_alt    112815 1 +    126136 A
s panTro5.chr5             181378854 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191756 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609094 1 - 121039945 A
i nomLeu3.chr6             I 61 C 0
s rheMac8.chr6             179565719 1 - 180051392 a
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299527 1 - 181584905 a
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305566 1 -   1764207 A
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309876 1 -  16742782 A
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611276 1 -  91010382 A
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207483 1 -    438239 A
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237215 1 -    514179 A
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897014 1 + 204313951 A
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e saiBol1.JH378155          16050298 1 +  16417988 I
e canFam3.chr34             11755960 402 +  42124431 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=9153.000000
s hg38.chr5_KI270793v1_alt    112816 2 +    126136 GG
s panTro5.chr5             181378855 2 - 181907262 GT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191757 2 +    698298 GG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609095 2 - 121039945 GG
i nomLeu3.chr6             C 0 I 3
s rheMac8.chr6             179565720 2 - 180051392 gg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299528 2 - 181584905 gg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305567 2 -   1764207 GG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309877 2 -  16742782 GG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611277 2 -  91010382 GT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207484 2 -    438239 GG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237216 2 -    514179 GT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897015 2 + 204313951 GG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050299 2 +  16417988 GG
i saiBol1.JH378155         I 1 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e canFam3.chr34             11755960 402 +  42124431 I
e panPan2.chr5             183096869 611 - 183735486 I

a score=63533.000000
s hg38.chr5_KI270793v1_alt    112818 18 +    126136 GGC-AG-GGGGAGTGTGTGG
s panTro5.chr5             181378857 18 - 181907262 GGC-AG-GGGTTGTGCATGG
i panTro5.chr5             C 0 T 28
s panPan2.chr5             183097480 17 - 183735486 ggC-AG-GGGGAGTGTGTG-
i panPan2.chr5             I 611 C 0
s gorGor5.CYUI01015805v1      191759 18 +    698298 GTC-AG-GGGGAGCATGTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609100 16 - 121039945 AGC-GG-GGTGTGTGTGT--
i nomLeu3.chr6             I 3 C 0
s rheMac8.chr6             179565722 19 - 180051392 ggc-ggaggagtgtatgtgg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299530 19 - 181584905 ggc-ggaggagtgtatgtgg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305569 19 -   1764207 GGC-GGAGGAGTGTATGTGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309879 19 -  16742782 GGC-GGAGGAGTGTATGTGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611279 18 -  91010382 GGC-AG-GGGGAGTGCGTGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207486 19 -    438239 GGC-GGAGGAGTGTATGTGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237218 20 -    514179 GGCAGGGGGAGTGTGTGTGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897017 18 + 204313951 GGC-AG-GGCGGAGGTGTGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050301 18 +  16417988 GGC-AG-GGGGATGGTGTGG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e canFam3.chr34             11755960 402 +  42124431 I

a score=78276.000000
s hg38.chr5_KI270793v1_alt    112836 18 +    126136 GTGTGTGAGTGGC---AGGGG-
s panTro5.chr5             181378847 18 - 181907262 GTGTGTGAGTGGC---AGGGG-
i panTro5.chr5             T 28 C 0
s panPan2.chr5             183097497 17 - 183735486 -TGTGTGAGGGGC---AGGGG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191777 18 +    698298 GTGTGTGAGTGGC---AGGGG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609116 18 - 121039945 GTGTCTGGGAAGC---AGGAG-
i nomLeu3.chr6             C 0 I 23
s rheMac8.chr6             179565741 17 - 180051392 gtgtgtgagtggt---gggg--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299549 17 - 181584905 gtgtgtgagtggt---gggg--
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305588 17 -   1764207 GTGTGTGAGTGGT---GGGG--
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309898 17 -  16742782 GTGTGTGAGTGGT---GGGG--
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611297 17 -  91010382 GTGTGTGAGTGGT---GGGG--
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207505 17 -    438239 GTGTGTGAGTGGC---GGGG--
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237238 20 -    514179 GTGTGTGAGTGGCAGGGGGA--
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897035 19 + 204313951 GTGCCTGAGTGGC---AGGCGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050319 19 +  16417988 GTGACTGAGTGGC---AGGCGG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e canFam3.chr34             11755960 402 +  42124431 I

a score=161237.000000
s hg38.chr5_KI270793v1_alt    112854 32 +    126136 TTGTGCATGGGTTTGTGAGTGGCAGGCGGTAA-
s panTro5.chr5             181378865 32 - 181907262 TTGTGCATGGGTTTGTGAGTGGCAGGCGGTAA-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183097514 32 - 183735486 TTGTGCATGGGTTTGTGAGTGGCAGGCGGTAA-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191795 31 +    698298 TTGTGCATGGGTTTGTGAGTGGCA-GCAGTAA-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179565758 32 - 180051392 ttgtgcatgggtgtgtgagtgGCAGGCAGTAA-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299566 32 - 181584905 ttgtgcatgggtgtgtgagtgGCAGGCAGTAA-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305605 32 -   1764207 TTGTGCATGGGTGTGTGAGTGGCAGGCAGTAA-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309915 32 -  16742782 TTGTGCATGGGTGTGTGAGTGGCAGGCAGTAA-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611314 32 -  91010382 TTATGCATGGGTGTGTGAGTGGCAGGCAGTAA-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207522 32 -    438239 TTGTGCATGGGTGTGTGAGTGGCAGGCAGTAA-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237258 32 -    514179 GTGTGTGCGGGTGTGTGAGGGGCAGGCAGTAA-
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897054 32 + 204313951 TAATGTGT-GGTATGTGAGAGGCAGGTGGGGAG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050338 32 +  16417988 TAATGTGT-GGTGTGTGAGGGGCAGGTGGGGAG
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25464939 191 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137485 123 +    298490 I
e canFam3.chr34             11755960 402 +  42124431 I
e nomLeu3.chr6             120609134 23 - 121039945 I

a score=407565.000000
s hg38.chr5_KI270793v1_alt    112886 54 +    126136 TGTGTGGGTGTTTCAGGAGCAGCGGGATGTGTGTGTGTGTCTGAGGAGCAGGGG
s panTro5.chr5             181378897 54 - 181907262 TGCGTGGGTGTTTCAGGAGCAGCGGGATGTGTGTGTGTGTCTGAGGAGCAGGAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183097546 54 - 183735486 TGCGTGGGTGTTTCAGGAGCAGCAGGATGTGTGTGTGTGTCTGAGGAGCAGGAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191826 54 +    698298 TGTGTGGGCGTTTCAGGAGCAGCGGGGTGTGTGTGTGTGTCTGaggagcaggag
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179565790 52 - 180051392 TGTGTGGCTGTTTGAGGAGCAGCAGG--GAATGTGTGTGTCTAGGGAGCAGGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299598 52 - 181584905 TGTGTGGGTGTTTGAGGAGCAGCAGG--GAATGTGTGTGTCTAGGGAGCAGGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305637 52 -   1764207 TGTGTGGGTGTTTGAGGAGCAGCAGG--GAATGTGTGTGTCTAGGGAGCAGGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309947 52 -  16742782 TGTGTGGGTGTTTGAGGAGCAGCAGG--GAATGTGTGTGTCTAGGGAGCAGGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611346 52 -  91010382 TGTGTGGGTGTTTGAGGAGCAGCAGG--GGGTGTGTGTGTTTAGGGAGCAGGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207554 52 -    438239 TGTGTGGGTGTTTGAGGAGCAGCAGG--GAATGTGTGTGTCTAGGGAGCAGGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237290 52 -    514179 TGTGTAGGTGTTTGAGGAGCAGCAGG--GGGTGTGTGTGTCTAGGGAGCAGGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897086 50 + 204313951 TGTGTGGGTGTTTGGAGAGCAGAGGG--GAGTA--TGTGTCTGAGGAGCAGGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050370 52 +  16417988 TGTGTGGGTGTTTGAAGAGCAGAGGG--GAGTATGTGTGTCTGAGGAGTAGGGG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      137608 52 +    298490 TGTGTGGGTGTTTGAAGAGCAGAGGG--GAGTATGTGTGTCTGAGGAGCAGGGG
i cebCap1.NW_016108158v1   I 123 I 159
s aotNan1.NW_018503740v1    25465130 52 -  25620257 TGTGTGGGTGTTTGAAGAGCAGAGGG--GAGTATGTGTGTCTGAGGAGCAGGGG
i aotNan1.NW_018503740v1   I 191 I 20
e otoGar3.GL873745           1911808 718 -   2165740 I
e canFam3.chr34             11755960 402 +  42124431 I
e nomLeu3.chr6             120609134 23 - 121039945 I

a score=84237.000000
s hg38.chr5_KI270793v1_alt    112940 27 +    126136 ACCCTGTGGAGGATAAGCAGGAGCAGC
s panTro5.chr5             181378951 27 - 181907262 AGCCTGCGGAGGATAAGCAGGAGCAGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183097600 27 - 183735486 AGCCTGCGGAGGATAAGCAGGAGCAGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191880 27 +    698298 agcctgcggaggataagcaggagcagc
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179565842 23 - 180051392 AACCCGTGGAGGAGAAGCGGAAG----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299650 23 - 181584905 AACCCGTGGAGGAGAAGCGGAAG----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305689 23 -   1764207 AACCCGTGGAGGAGAAGCGGAAG----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      309999 23 -  16742782 AACCCGTGGAGGAGAAGTGGAAG----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611398 23 -  91010382 AACCCGTGGAGGAGAAGCGGAAG----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207606 23 -    438239 AACCCGTGGAGGAGAAGCGGAAG----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237342 23 -    514179 AACCCGTGGAGGAGATGTGGAAG----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897136 20 + 204313951 GACCCATGGGGG-CAAGAAGG------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050422 21 +  16417988 GACCCCCGGGGGACAAGAAGG------
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25465182 20 -  25620257 I
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137660 159 +    298490 I
e canFam3.chr34             11755960 402 +  42124431 I
e nomLeu3.chr6             120609134 23 - 121039945 I

a score=4011.000000
s hg38.chr5_KI270793v1_alt    112967 2 +    126136 AG
s panTro5.chr5             181378978 2 - 181907262 AG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183097627 2 - 183735486 AG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191907 2 +    698298 ag
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203897156 2 + 204313951 AG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050443 2 +  16417988 AG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25465202 2 -  25620257 AG
i aotNan1.NW_018503740v1   I 20 C 0
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137660 159 +    298490 I
e canFam3.chr34             11755960 402 +  42124431 I
e nomLeu3.chr6             120609134 23 - 121039945 I
e manLeu1.NW_012110441v1      207629 0 -    438239 C
e chlSab2.chr4              90611421 0 -  91010382 C
e cerAty1.NW_012009470v1      310022 0 -  16742782 C
e colAng1.NW_012118799v1      237365 0 -    514179 C
e macNem1.NW_012012389v1      305712 0 -   1764207 C
e macFas5.chr6             181299673 0 - 181584905 C
e rheMac8.chr6             179565865 0 - 180051392 C

a score=230504.000000
s hg38.chr5_KI270793v1_alt    112969 26 +    126136 GTGGTCCTTGCACTCTGGCCGTGTGA
s panTro5.chr5             181378980 26 - 181907262 GTGGTCCTTGCACTCTGGCCGTGTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183097629 26 - 183735486 GTGGTCCTTGCACTCTGGCCGTGTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191909 26 +    698298 GTGGTCCTTGCACTCTGGCCATGTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609157 26 - 121039945 GTGGTCCTTGCACTCTGGCCGTGTGA
i nomLeu3.chr6             I 23 C 0
s rheMac8.chr6             179565865 26 - 180051392 GTGGTCCTTGCACTCTGGCCATGTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299673 26 - 181584905 GTGGTCCTTGCACTCTGGCCATGTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305712 26 -   1764207 GTGGTCCTTGCACTCTGGCCATGTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310022 26 -  16742782 GTGGTCCTTGCACTCTGGCCATGTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611421 26 -  91010382 GTGGTCCTTGCACTCTGGCCGTGTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207629 26 -    438239 GTGGTCCTTGCACTCTGGCCATGTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237365 26 -    514179 GTGGTCCTTGCACTCTGGCCATGTGA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897158 26 + 204313951 ATGGTACCTGCACTCTGGCCATGGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050445 26 +  16417988 GTGGTACCTGCACTCTGGCCGTGGGG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25465204 26 -  25620257 GTGGTACCTGCACTCTGGCCATGGGG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137660 159 +    298490 I
e canFam3.chr34             11755960 402 +  42124431 I

a score=732484.000000
s hg38.chr5_KI270793v1_alt    112995  89 +    126136 TGACCATGTTC------------AGCTCTGGGTTGCTCCCTCACATT-----GGCGAG-TGCCCTTACAAGCCTGAGCTCTG-----------GGCTCCCTGTTCTATCCGACTGCCA
s panTro5.chr5             181379006  89 - 181907262 TGACCATGTTC------------AGCTCTGGGTCGCTCCCTCACGTT-----GGCGAG-TGCCCTTACCAGCCTGAGCTCTG-----------GGCTCCCTGTTCTGTCCGACTGCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183097655  89 - 183735486 TGACCATGTTC------------AGCTCTGGGTCGCTCCCTCACGTT-----GGCGAG-TGCCCTTACCAGCCTGAGCTCTG-----------GGCTCCCTGTTCTGTCCGACTGCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      191935  89 +    698298 TGACCATGTTC------------AGCTCTGGGTCGCTCCCTCACGTT-----GGCGAG-TGCCCTTACCAGCCTGAGCTCTG-----------GGCTCCCTGTTCTGTCTGATTGCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609183 101 - 121039945 TGACCACGTTCAGAGCTGGGGTGAGCTCTGGGTCGCTCCCTCACATT-----GGCGAG-TGCCTTTACCAGCCTGAGCTCTG-----------GGCTCTCTGCTCTGTCCGATTGCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565891 101 - 180051392 TGACCATGTTCAGAGCTGGGGTGAGCTCTGGGTGGCTCCCTCACGTT-----GGCGAG-TACCTTTACCAGCCTGAGCTCTG-----------GGCTCCCTGCTCTGTCCGATTGCCG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299699 101 - 181584905 TGACCATGTTCAGAGCTGGGGTGAGCTCTGGGTGGCTCCCTCACGTT-----GGCGAG-TACCTTTACCAGCCTGAGCTCTG-----------GGCTCCCTGCTCTGTCCGATTGCCG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305738 101 -   1764207 TGACCATGTTCAGAGCTGGGGTGAGCTCTGGGTGGCTCCCTCACGTT-----GGCGAG-TACCTTTACCAGCCTGAGCTCTG-----------GGCTCCCTGCTCTGTCCGATTGCCG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310048 101 -  16742782 TGACCATGTTCAGAGCTGGGGTGAGCTCTGGGTGGCTCCCTCACGTT-----GGCGAG-TACCTTTACCAGCCTGAGCTCTG-----------CGCTCCCTGCTCTGTCCGATTGCCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611447 101 -  91010382 TGACCTTGTTCAGAGCTGGGGTGAGCTCTGGGTGGCTCCCTCACGTT-----GGCGAG-TGCCTATACCAGCCTGAGCTCTG-----------GGCTCCCTGCCCTGTCTGATTGCCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207655 101 -    438239 TGACCATGTTCAGAGCTGGGGTGAGCTCTGGGTGGCTCCCTCACGTT-----GGCGAG-TGCCTGTACCAGCCTGAGCTCTG-----------GGCTCCCTGCTCTGTCCGATTGCCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237391 106 -    514179 TGCCCATATTCAGAGCTGGGGTGAGCTCTGGGTGGTTCCCTCACGTGGTAAAGGCGAG-TGCCTTTACCAGCCTGAGCTCTG-----------GGCTCCCTGCTCTGTCCGATTGCCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897184 100 + 204313951 TGACCATGTTCAGAGCTGGGGTGA-CTCTGGGTCGCTGCCTCACGCT-----GGTGAG-TGCCTTTACCGACCTGAGGTCTG-----------GGTTCGCTGCTCAGTCTCATTCCTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050471 100 +  16417988 TGACCATGTTGAGAGCTGGGGTGA-CTCTGGGTCACTCCCTCACTCT-----GGTGAG-TGCCTTTACTGACCTGAGGTCTG-----------GGTTCGCTGCTCAGTCTCATTCCTG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25465230 100 -  25620257 TGACCATGTTCAGAGCTGGGGTGA-CTCTGGGTCGCTCCCTCACACT-----GGTGAG-TGCCTTTACCGACCTGAGGTCTG-----------GGTTCGCTGCTCTGTCTCATTCTTG
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11756362  88 +  42124431 TGACGATG-----------GGTGGCATCCAGGCCACTCTCTGGGTCC-----TGCGAGATGCCCTCCTAGGTCAGGGGTCTGGCCTGGGGCTTGGCTTCACGCT--------------
i canFam3.chr34            I 402 C 0
e otoGar3.GL873745           1911808 718 -   2165740 I
e cebCap1.NW_016108158v1      137660 159 +    298490 I

a score=93436.000000
s hg38.chr5_KI270793v1_alt    113084 11 +    126136 GCCTTCCCTT-G
s panTro5.chr5             181379095 11 - 181907262 GCCTTCCCTT-G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183097744 11 - 183735486 GCCTTCCCTT-G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192024 11 +    698298 GCCTTCCCTT-G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609284 11 - 121039945 GCCTTCCCTT-G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179565992 11 - 180051392 GCCTTCTCTT-G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299800 11 - 181584905 GCCTTCCCTT-G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305839 11 -   1764207 GCCTTCCCTT-G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310149 11 -  16742782 GCCTTCCCTT-G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611548 11 -  91010382 GCCTTCCCTT-G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207756 11 -    438239 GCCTTCCCTT-G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237497 11 -    514179 GCCTTTCCTC-G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897284 10 + 204313951 GCCTTCTTTT--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050571 10 +  16417988 GCCTTCTTTT--
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25465330 11 -  25620257 GCCTTCTTTTG-
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1912526 11 -   2165740 GCCTTTCCCT-G
i otoGar3.GL873745         I 718 C 0
s canFam3.chr34             11756450 11 +  42124431 GCCTTTCCTT-G
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      137660 159 +    298490 I

a score=1782635.000000
s hg38.chr5_KI270793v1_alt    113095 192 +    126136 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGTGTCGTGTCGTCAGT-CTAGGAAGAATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGTCCAGGT---GGAGTCAGGAGAGCAG-CCAGGGTGCCCAA-GGGGTTCCCG--TGT-GTGCACCGTCCACAGGGGCCTGAAAGGAAGGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGT-------------------G
s panTro5.chr5             181379106 192 - 181907262 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGTGTCGTGTCGTCAGT-CTAGGAAGAATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGTCCAGGT---GGAGTCAGGAGAGCAG-CCAGGGTGCCCAA-GGGGTTCCCG--TGT-GTGCACCGTCCACAGGGGCCTGCAAGGAAGGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGT-------------------G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183097755 192 - 183735486 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGTGTCGTGTCGTCAGT-CTAGGAAGAATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGTCCAGGT---GGAGTCAGGAGAGCAG-CCAGGGTGCCCAA-GGGGTTCCCG--TGT-GTGCACCGTCCACAGGGGCCTGCAAGGAAGGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGT-------------------G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192035 192 +    698298 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGTGTCGTGTCGTCAGT-CGAGGAAGAATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGTCCAGGT---GGAGTCAGGAGAGCAG-CCAGGGTGCCCAA-GGGGTTCCCG--TGT-GTGCACCGTCCACAGGGGCCTGAAAGGAAAGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGT-------------------G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609295 211 - 121039945 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AACTGTCGTGTCGTCAGT-CTAGGAAGGATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGTCCAGGC---GGAGTCAGGAGAGCAG-CCAGGGTGCCCAA-GGCGTTCCCG--TGT-GTGCACCTTCCACAGGGGCCTGAAAGGAAGGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGTGGTAGCCGCCCTGGGCAGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179566003 211 - 180051392 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGCCTCTTCTTGTCAGT-CTAGGAAGAATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGCCCAGGC---GGACTCAGGAGAGCAG-CTGGGGTGCCCAA-GGGGTTCCCA--TGT-GTGCACCGTCCACAGGGGCCTGAAAGGAAGGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGTAATAGCTGCCCCGGGCAGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181299811 211 - 181584905 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGCCTCTTCTTGTCAGT-CTAGGAAGAATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGCCCAGGC---GGAGTCAGGAGAGCAG-CTGGGGTGCCCAA-GGGGTTCCCA--TGT-GTGCACCGTCCACAGGGGCCTGAAAGGAAGGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGTAATAGCTGCCCTGGGCAGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      305850 211 -   1764207 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGCCTCTTCTTGTCAGT-CTAGGAAGAATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGCCCAGGC---GGAGTCAGGAGAGCAG-CTGGGGTGCCCAA-CGGGTTCCCA--TGT-GTGCACCGTCCACAGGGGCCTGAAAGGAAGGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGTAATAGCTGCCCCGGGCAGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310160 211 -  16742782 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGCCTCTTCTTGTCAGT-CTAGGAAGAATTGAGA--------------TGGA-GCCTGGGG--CT-----------------GTGCCCAGGC---GGAGTCAGGAGAGCAG-CTGGGGTGCCCAA-GGGGTTCCCA--TGT-GTGCACCATCCACAGGGGCCTGAAAGGAAGGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGTAATAGCTGCCCCGGGCAGCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611559 211 -  91010382 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGCCTCTTCATGTCAGT-CTAGGAAAAATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGCCCAGGC---GGAGTCAGGAGAGCAG-CCGGGGTGCCCAA-GGGGTTCCCA--TGT-GTGCACCGTCCACAGGGGCCTGAAAGGAAGGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGTAATAGCTGCCCTGGGCAGCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207767 211 -    438239 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGCCTCTTCTTGTCAGT-CTAGGAAGAATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGCCCAGGC---GGAGTCAGGAGAGCAG-CTGGGGTGCCCAA-GGGGTTCCCA--TGT-GTGCACCGTCCACAGGGGCCTGAAAGGAAGGAGGGAGGGGCGGGCAGAGCAGGAGGGGCTGTAATAGCTGCCCCGGGCAGCG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237508 213 -    514179 GGGCTAGCTGTGTGTCAAGTCCATTTCCA------AAGCCTCTTCTTGTCAGT-CTAGGAAGAATTGAGA--------------TGGA-GCCTGGGG--CC-----------------GTGCCCAGGC---GGAGTCAGGAGAGCAG-CCGGGGTGCCCAA-CGGGTTCCCATGTGT-GTGCACCGTCCACAGGGGCCTGAAAGGAAGGAGGGAGGGGCAGGCAGAGCAGGAGGGGCTATAGTAGCTGCCCTGGGCAGCG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897294 193 + 204313951 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGCCAAGTGTCATCGGT-CTAGGAAGAATTGTGA--------------TGGAGGCCTCAGG--AC-----------------CAGGCCAGGCAGAGGAGTCAGGAGAGAAGCCCAGGGTGCTGAAGGGGGTTCCCA--TGT-GTGCACCATCCACATGAGCCTGAAAAGGAGGA-----GGGCAGGCAGAGCAGGAGGGGCTGTG-------------------
i calJac3.chr2             C 0 I 22
s saiBol1.JH378155          16050581 193 +  16417988 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGCCAAGTGTCTTCAGT-CTAGGAAGAATTGTGA--------------TGGAGGCCTCAGG--CC-----------------GAGGCCAGGCGAAGGAGTCAGGAGAGCAGCCCAGGGTGCCGAAGGGGGTTCCCA--TGT-GTGCACCATCCACACGGGCCTGAAAGGGAGGA-----GGGTAGGCAGAGCAGGAGGGGCTGTG-------------------
i saiBol1.JH378155         C 0 I 22
s cebCap1.NW_016108158v1      137819 192 +    298490 GGGCTGGCTGTGTGTCAAGTCCATTTCCA------AAGCCAAGTGTCTTCAGT-CTAGGAAGAATTGCGA--------------TGGAGGCCTCAGG--CC-----------------AAGGCCAGGTGGAGGAGTCAGGAGAGCAG-CCAGGGTGCCAAAGGGGGTTCCCA--TGT-GTGCACCATCCACACAGGCCTGAAAGGGAGGA-----GGGCAGGCGGAGCAGGAGGGGCTGTG-------------------
i cebCap1.NW_016108158v1   I 159 I 63
s aotNan1.NW_018503740v1    25465341 192 -  25620257 -GGCTGGCTGTGTGTCAAGTCCCTTTCCA------AAGCCAAGTGTCTTCGGT-CTAGGAAGAATTGTGA--------------TGGAGGCCTCAGG--CC-----------------GAGGCCAGGCGGAGGAGTCAGGAGAGCAGCCCAGGGTGCCGAAGGGGGTTCCCA--TGT-GTGCACCATCCACACGGGCCTGAAAGGGAGGA-----GGGCAGGCAGAGCAGGAGGGGCTGTG-------------------
i aotNan1.NW_018503740v1   C 0 I 22
s otoGar3.GL873745           1912537 156 -   2165740 --ACTGGCTGTGTCTCAAGTCCACATTC------------------------T-CCAGGAAGAATCAAAA----------------GA-GCCCAAGG--CTTGCTCGACACCAGGACAAAGTCCAGTCTG-AGAGGCA-GACAGTAG-CCGGGGTGCAGGATGGGCTTCCCA------------------------CCTCTAGGGCAATGTGGAGAGGCAAG----------GGCCCTG---------------------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11756461 207 +  42124431 GAGCTGGCTGTGTCTTGAGTCCACATCTACAACCCAAGGGTTCATTCATCGGTGCTAGAAGGAATCGAGAGCCCCATGGTTTGCTGGA-CACAGGGGGTCA-----------------GAGTCCAGGTGGAGGAGTCA-GACTGTAG--CGGAGTGT-----AGGCTTCCCA--TGTGGGGCACGGTTGAGGTGAGCCCGT-GGGAGGGA-----GGCCAGCCAGCGTGAGAGGGGCTGGG-------------------
i canFam3.chr34            C 0 C 0

a score=191428.000000
s hg38.chr5_KI270793v1_alt    113287 26 +    126136 --GGAATTCCACAAATGGGGAGCGGCAC
s panTro5.chr5             181379298 26 - 181907262 --GGAATTCCACAAATGGGGAGCGGCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183097947 26 - 183735486 --GGAATTCCACAAATGGGGCGCGGCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192227 26 +    698298 --GGAATTCCACAAATGGGGAGCGGCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609506 26 - 121039945 --GGAATTCCACAAATGGGGAGGGGCAC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179566214 25 - 180051392 --GGAATTCCAGAAAC-AGGAGGGGCAC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300022 25 - 181584905 --GGAATTCCAGAAAC-AGGAGGGGCAC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306061 25 -   1764207 --GGAATTCCAGAAAC-AGGAGGGGCAC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310371 25 -  16742782 --GGAATTCCAGAAAC-GGGAGGGGCAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611770 25 -  91010382 --GGAATTCCACAAAC-GGGAGGGGCAC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      207978 25 -    438239 --GGAATTTCAGAAAC-GGGAGGGGCAC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237721 25 -    514179 --GGAATTCCAGAAAC-GGGAGGGGCAC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897509 26 + 204313951 --GGAATTCCACAAATGGGGAGGGACAC
i calJac3.chr2             I 22 C 0
s saiBol1.JH378155          16050796 26 +  16417988 --GGAATTCCACAAATGGGGAGGGGCAC
i saiBol1.JH378155         I 22 C 0
s aotNan1.NW_018503740v1    25465555 26 -  25620257 --GGAATTCCACAAATGGGGAGGGGCAC
i aotNan1.NW_018503740v1   I 22 I 68
s otoGar3.GL873745           1912693 19 -   2165740 --GGA----CACAG---GGACGGGGTAA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11756668 22 +  42124431 GCAGGGGGCCA------GGGGGAGGCAC
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      138011 63 +    298490 I

a score=146490.000000
s hg38.chr5_KI270793v1_alt    113313 29 +    126136 ATCCTGGGAATGGGCCTGGCCGTTTGTGC
s panTro5.chr5             181379324 29 - 181907262 ATCCTGGGAATGGGTCTGGCCGTTTGTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183097973 29 - 183735486 ATCCTGGGAATGGGTCTGGCCGTTTGTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192253 29 +    698298 ATCCTGGGAATGGGTCTGGCCGTTTGTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609532 29 - 121039945 ATCCTGGGAATGGGCCTGGCCGTTTGTGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179566239 29 - 180051392 ATCCTGGGAGTGGGCCTGGCCGTTGGTGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300047 29 - 181584905 ATCCTGGGAGTGGGCCTGGCCGTTGGTGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306086 29 -   1764207 ATCCTGGGAGTGGGCCTGGCCGTTGGTGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310396 29 -  16742782 ATCCTGGGAGTGGGCCTGGCCGTTGGTGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611795 29 -  91010382 ATCCTGGGAGTGGGCCTGGCCGTTGGTGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208003 29 -    438239 ATCCTGGGAGTGGGCCTGGCCGTTGGTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237746 29 -    514179 ATCCTGGGAGTGGGCCTGGCCGTTGGTGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897535 10 + 204313951 GTCCCAGGAA-------------------
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050822  8 +  16417988 ATCCAGGG---------------------
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1912712 12 -   2165740 GTTCAGGGA--------GGC---------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11756690 16 +  42124431 ----GGGGCGGGGGCCCAGC---------
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25465581 68 -  25620257 I
e cebCap1.NW_016108158v1      138011 63 +    298490 I

a score=470216.000000
s hg38.chr5_KI270793v1_alt    113342 65 +    126136 TGCTGTGCTGGG---GGTGGTTAGGGCTG--------TGACAGAGACTCCAGGCTGATGGCATGGAC-TCTGGGGTG-
s panTro5.chr5             181379353 65 - 181907262 TGCTGTGCTGGG---GGTGGTTAGGGCTG--------TGACAGAGACTCCAGGCTGATGGCATGGAC-TCTGGGGTG-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098002 65 - 183735486 TGCTGTGCTGGG---GGTGGTTAGGGCTG--------TGACAGAGACTCCAGGCTGATGGCATGGAC-TCTGGGGTG-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192282 65 +    698298 TGCTGTGCTGGG---GGTGGTTAGGGCTG--------TGACAGAGACTCCAGGCTGATGGCATGGAC-TCTGGGGTG-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609561 65 - 121039945 TGCTGTGCTGGG---ATTGGTTAGGGCTG--------TGACAGAGACTCCAGGCTGATGGCATGGAC-TCTGGGGTG-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179566268 68 - 180051392 TGCTGTGCTGGGGAGGATGGTTAGGGCTG--------CGACTGCGACTCCAGGTTGATGGCATGGAC-TCTGGGGTG-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300076 68 - 181584905 TGCTGTGCTGGGGAGGATGGTTAGGGCTG--------CGACTGCGACTCCAGGTTGATGGCATGGAC-TCTGGGGTG-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306115 68 -   1764207 TGCTGTGCTGGGGAGGATGGTTAGGGCTG--------CGACTGCGACTCCAGGTTGATGGCATGGAC-TCTGGGGTG-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310425 56 -  16742782 TGCTGTGCTGGGGAGGATGGTTAGGGCTG--------CGACCGCGACTCCAGGTTGATGGCA-------------TG-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611824 68 -  91010382 TGCTGTGCTGGGGAGGATGGTTAGGGCTG--------CGACCGCAACTCCAGGTTGATGGCATGGAC-TCTGGGGTG-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208032 68 -    438239 TGCTGTGCTGGGGAGGATGGTTAGGGCTG--------CGACCGCGACTCCAGGTTGATGGCATGGAC-TCTGGGGTG-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237775 62 -    514179 TGCTGTGCTGGGGACGATGGTTAGGGCTG--------TGACCGAGACTCCAGGTTGATGGCATGGAC-TCT-------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897545 64 + 204313951 TGCTGTGCTGAG---GATGGCTAAGG-TG--------TGATAGAGACTCCAAGCTGATGGCATGGAC-TTTGGGGTG-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050830 62 +  16417988 -GCTGTGCTG-G---GGTGTCTAGGG-CG--------TGTTAGAGACTCCAGGCTGATGGCATGGAC-TTTGGGGTG-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      138074 64 +    298490 TGCTGTGCTGGG---GATGGCTAGGG-TG--------TGATAGAGACTCCAAGCTGATGGCGTGGAC-TTTGGGGTG-
i cebCap1.NW_016108158v1   I 63 I 6
s otoGar3.GL873745           1912724 61 -   2165740 GACAGGGCTGGA---GGTGGCTGCAGCTG-------------GATGCTGGGGGCCTAGGGCATTGTCAGCTGTAGTG-
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11756706 60 +  42124431 --------------GGGTGGCGAGGGCTGACCATGCGGGCTGGGGCCTGCAGGCAGGTG---TGGAC-TCCCGGCGGA
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25465581 68 -  25620257 I

a score=-16398.000000
s hg38.chr5_KI270793v1_alt    113407 42 +    126136 GGAGACCGAGAAATCTCCCCATGGACTCTGGGGTGAGGAGTG-------
s panTro5.chr5             181379418 42 - 181907262 GGAGACCGAGAAATCTCCCCATGGACTCTGGGGTGAGGGGTG-------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098067 42 - 183735486 GGAGACCGAGAAATCTCCCCATGGACTCTGGGGTGAGGGGTG-------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192347 33 +    698298 GGAGACCGAGAAATCT-CCCATGGACT--------AGGGGTG-------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609626  6 - 121039945 ------------------------------------GGGGTG-------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179566336  7 - 180051392 G-----------------------------------GGGGTG-------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300144  7 - 181584905 G-----------------------------------GGGGTG-------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306183  7 -   1764207 G-----------------------------------GGGGTG-------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310481  7 -  16742782 G-----------------------------------GGGGTG-------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611892  7 -  91010382 G-----------------------------------GTGGTG-------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208100  7 -    438239 G-----------------------------------GGCGTG-------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237837  6 -    514179 ------------------------------------GGGGTG-------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897609  5 + 204313951 -------------------------------------GGGTG-------
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16050892  5 +  16417988 -------------------------------------GGGTG-------
i saiBol1.JH378155         C 0 I 1
s canFam3.chr34             11756766 29 +  42124431 --------------------GGGGGCGGAGGGACACGGGGTGGTGAGCT
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25465581 68 -  25620257 I
e otoGar3.GL873745           1912785  0 -   2165740 C
e cebCap1.NW_016108158v1      138138  6 +    298490 I

a score=10035.000000
s hg38.chr5_KI270793v1_alt    113449 1 +    126136 G
s panTro5.chr5             181379460 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098109 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192380 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609632 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179566343 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300151 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306190 1 -   1764207 G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310488 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611899 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208107 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237843 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897615 1 + 204313951 G
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16050898 1 +  16417988 A
i saiBol1.JH378155         I 1 C 0
s cebCap1.NW_016108158v1      138144 1 +    298490 G
i cebCap1.NW_016108158v1   I 6 C 0
s canFam3.chr34             11756795 1 +  42124431 G
i canFam3.chr34            C 0 C 0
e aotNan1.NW_018503740v1    25465581 68 -  25620257 I
e otoGar3.GL873745           1912785 0 -   2165740 C

a score=879637.000000
s hg38.chr5_KI270793v1_alt    113450 93 +    126136 GGGGCCGAGAAATCTCCCCATGTCTCCCCATGGAAGGCTCTGCCTTAGGGAAAGACCAGGTGACCT-GTGCCAAGCTCCTGGTCCCTGGAGGGC
s panTro5.chr5             181379461 93 - 181907262 GGGGCCGAGAAATCTCCCCATGTCTCCCCATGGAAGGCTCTGCCTTAGGGAAAGACCAGGTGACCT-GTGCCAAGCTCCTGGTCCCTGGAGGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098110 93 - 183735486 GGGGCCGAGAAATCTCCCCATGTCTCCCCATGGAAGGCTCTGCCTTAGGGAAAGACCAGGTGACCT-GTGCCAAGCTCCTGGTCCCTGGAGGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192381 93 +    698298 GGGGCCGAGAAATCTCCCCATGTCTCCCCATGGAAGGCTCTGCCTTAGGGAAAGACCAGGTGACCT-GTGCCAAGCTCCTGGTCCCTGGAGGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609633 93 - 121039945 GGGGCTGAGAAGTCTCCCCATGTCTCCCCATGGAAGGCTGTGCCTTAGGGAAAGACCAGGTGACCT-GTGCCAAGTTCCTGGTCCCTGGAGGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179566344 93 - 180051392 GGGGCCGAGAAATCTCCCCACGTCTCCTCATGGAAGGCTCTGCCTTCGGGAAAGACCAGGTGACCC-GTGCCAAGACCCTGGTCTCTGGAGGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300152 93 - 181584905 GGGGCCGAGAAATCTCCCCACGTCTCCTCATGGAAGGCTCTGCCTTCGGGAAAGACCAGGTGACCC-GTGCCAAGACCCTGGTCTCTGGAGGGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306191 93 -   1764207 GGGGCCGAGAAATCTCCCCACGTCTCCTCATGGAAGGCTCTGCCTTCGGGAAAGACCAGGTGACCC-GTGCCAAGACCCTGGTCTCTGGAGGGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310489 93 -  16742782 GGGGCCGAGAAATCGCCCCACGTCTCCTCATGGACGGCTCTGCCTTCGGGAAAGACCAGGTGACCC-GTGCCAAGACCCTGGTCTCTGGAGGGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611900 93 -  91010382 GGGGCCGAGAAATCTCCCCACGTCTCCTCATGGAAGGCTCTGCCTTAGGGAAAGACCAGGTGACCC-GTGCCGAGACCCTGGTCCCTGGAGGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208108 93 -    438239 GGGGCCGAGAAATCTCCCCACGTCTCCTCATGGAAGGCTCTGCCTTCGGGAAAGACCAGCTGACCC-GTGCCAAGACCCTGGTCTCTGGAGGGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237844 93 -    514179 GGGGCCGAGAAATCTCCCCATGTCTCCTCATGGAAGGCTCTGCCTTAGGGAAAGACCAGGTGACCC-GTGCCAAGATCCTGGTCCCTGGAGGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897616 92 + 204313951 GGGACCAAGAAATCTCCCC-CATCCCCCAATTGAAGGCTCTGCCTCAGGGAAAGACAAGGTGACCT-GTGCCAGGCTCCTGCTCCACGGAGGGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050899 92 +  16417988 GGGGCCAAGAAATCTTCCC-CATCTCCCAATTGAAGGCTCTGCCTCAGGGAAAAACAAGGCAACCC-GTGCCAGGCTCCTGCTCCCCGGAGGGC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      138145 92 +    298490 GGGGCCAAGAAATCTCCCC-CATCCCCCAATTGAAGGCACTGCCTCAGGGAAAGACAAGGCAACCC-ATGCCAGGCTCCTGCTCCCCGGAGGGC
i cebCap1.NW_016108158v1   C 0 I 161
s aotNan1.NW_018503740v1    25465649 92 -  25620257 GGGGCCAAGAAATCTCCCC-CATCCCCCAATTGAAGGCTCTGCCTCAGGGAAAGACAAGGCGACCC-ATGCCAGGCTCCTGCCCCACAGAGGGC
i aotNan1.NW_018503740v1   I 68 C 0
s otoGar3.GL873745           1912785 68 -   2165740 -------------------------CCCCACAAGACACTCTGCTTCAAGAAAAGGTGGGGCCACCCAGTGCCA-GTTTCAGCTCCCTGGGGAGC
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11756796 67 +  42124431 AGTCCCGTCCCGGCTCCCC---TCATCCAGTGGCCGGCTCTGCTTCAGACACAGAT---GTGGCCC---------------------TGAAGGC
i canFam3.chr34            C 0 C 0

a score=1150557.000000
s hg38.chr5_KI270793v1_alt    113543 165 +    126136 GGCCTTTGAGTGCATCCCCGAGGGCTTTGTGCTGGACCATCCCAGCCGGGACCCCC-TATCTGGCTCTGGGAGCCAGCCCTGGGGAGGGACAGAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGCGGGAGCCAGGG-ACGCACTGGCAG
s panTro5.chr5             181379554 165 - 181907262 GGCCTTTGAGTGCATCCCCGAGGGCTTTGTGCTGGACCATCCCAGCCGGGACCCCC-TATCTGGCTCTGGGAGCCAGCCCTGGGGAGGGACAGAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGCGGGAGCCAGGG-GCACACTGGCAG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098203 165 - 183735486 GGCCTTTGAGTGCATCCCCGAGGGCTTTGTGCTGGACCATCCCAGCCGGGACACCC-TATCTGGCTCTGGGAGCCAGCCCTGGGGAGGGACAGAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGCGGGAGCCAGGG-GCACACTGGCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192474 164 +    698298 GGCCTTTGAGTGCATCCCCGAGGGCTTTGTGCTGGACCATCCCAGCCGGGACCCCC-TATCTGGCTCTGGGAGCCAGCCCTGGGGAGGGACAGAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGCGGGAGCCAGGG-GCGCA-TGGCAG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609726 165 - 121039945 GGCCTTTGAGTGCGGCCCTGAGGGCTCTGTGCGGGCCCATCCCAGCCGGGACCCCC-TACTTGGTTCTGGGAGCCAGCCCTGGGCAGGGACAGAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGGGGGGGCCAGGG-GCACACTGGCAG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179566437 163 - 180051392 GGCCTTTGAGTGCATCCCTGAGGGCTTTGTGCTGGGCCATCCCAGCCAGTCCCCCC-TATCTGGTTCTGGGAGCCAGCCCTGGGCAGGGACAAAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGACAGAGGGAAGGAGCTGGGCCTGGGG-GCAC--CGGCAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300245 163 - 181584905 GGCCTTTGAGTGCATCCCTGAGGGCTTTGTGCTGGGCCATCCCAGCCAGTCCCCCC-TATCTGGTTCTGGGAGCCAGCCCTGGGCAGGGACAAAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGCTGGGCCTGGGG-GCAC--CAGCAG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306284 163 -   1764207 GGCCTTTGAGTGCATCCCTGAGGGCTTTGTGCTGGGCCATCCCAGCCAGTCCCCCC-TATCTGGTTCTGGGAGCCAGCCCTGGGCAGGGACAAAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGCTGGGCCTGGGG-GCAC--CGGCAG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310582 163 -  16742782 GGCCTTTGAGTGCGTCCCTGAGGGCTTTGTGCTGGGCCATCCCAGCCAGGCCCCCC-TATGTGGTTCTGGGAGCCAGCCCTGGGCAGGGACAAAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGCTGGGCCCGGGG-GCGC--CGGCAG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90611993 162 -  91010382 GGCCTTTGAGTGCCTCCCTGAGGGCTTTGTGCTGGGCCATCCCAGCTGGGCCCCCC-TATCTGATTCTGGGAGCCATCCCTGGGCAGGGACAAAGCCAGGCTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGCGGGGCCC-GGG-GCGC--CGGCAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208201 163 -    438239 GGCCTTTGAGTGCGTCCCTGAGGGCTTTGTGCTGGGCCATCCCAGCCAGGCCCCCC-TATCTGGTTCTGGGAGCCAGCCCTGGGCAGGGACAAAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGCTGGGCCCGGGG-GCGC--CGGCAG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      237937 163 -    514179 GGCCTTTGAGTGCGTCCCTGAGGGCTTTGTGCCGGGCCATCCCAGCCGGGCCCCCC-TCTCTGGTTCTGGGAGCCAGCCCTGGGCAGGGACAAAGCCAGGGTCCCCTTCTGGACTGTGCAGGGCTAGGGCAGAGGGAAGGAGCTGGGCCCGGGG-GCGC--CGGCAG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897708 163 + 204313951 --ATCCTGTGCATACCCCTGAGGGTTTCATGCTGGGCCATCCCAGCCGGGACCCCAGCATCTGGCTCTGGGAGCCACCCCTGGGCAGGGAGGAAACCAGTGGCCCCTTCCAGACCAGGCAGGTCTGGAACAGAAAGTAGGAGCGGGGGTGGGGGTGCGC--AGACTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16050991 159 +  16417988 --ATCCTGTGCTTATCCCTGAGGGATTCGTGCTGGGTCAT----GCCGGGACCCCAGCATCTGGCTCTGGGAGCCGCCCCTGGGCAGGGAGGAAACCAGTGGCCCCTTCCAGACCAGGCAGGGCTGGAACAGAAAGTAGGAGCGGGAGTGCGGGTGCAC--ATACCG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25465741 163 -  25620257 --ATCCTGTGCGTATCCCTGAGGGATTCGTGTTGGGTCATCCCAGCCGGGACCCCAGCATCTGGCTCTGGGAGCCGCCCCTGGGCAGGGAGGAAACCAGTGGCCCCTTCCGGACCAGGCAGGGCTGGAACAGAAAGTAGGAGCGGGGGTGGGGGTGCGC--AGACAG
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1912853 114 -   2165740 -------------AGCCC----------------------CACCTCCAAGACCATC-AGCTTGGCCCAGGGAGACCCCCCT-GGTAGAGATACAACCAGGGG-CCTTTCAGGATCAAGCCACACT----CAGCAGTGAAGGGCGGGGAGCTTGT-GC----------
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11756863 107 +  42124431 ----------------------------------AGCCAT--CAGCCCGGGGAGGC-------ATCCTGGAAGCCCTGGCGGGGGGGGGGGGGGGGGAAGGCACCCCCCTGG---GGGGGGGTCCAAAATTTTGGGGGAAGGCCCGGGCTTGG--------------
i canFam3.chr34            C 0 C 0
e cebCap1.NW_016108158v1      138237 161 +    298490 I

a score=658287.000000
s hg38.chr5_KI270793v1_alt    113708 69 +    126136 CTTCCTCCTTTCTG-GT--------GGATCGGGG----AACCTGCAGG--CTCACCGCCTGCTGAGCTGTCAT-GCCAAAGTCCA
s panTro5.chr5             181379719 69 - 181907262 CTTCCTCCTTTCTG-GT--------GGATCAGGG----AACCTGCAGG--CTCACCGCCTGCTGAGCGGTCAT-GCCAAAGTCCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098368 69 - 183735486 CTTCCTCCTTTCTG-GT--------GGATCAGGG----AACCTGCAGG--CTCACCGCCTGCTGAGCTGTCAT-GCCAAAGTCCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192638 69 +    698298 CTTCCTCCTTTCTG-GT--------GGATCAGGG----AACCTGCAGG--CTCACCGCCTGCTGAGCTGTCAT-GCCAAAGTCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609891 69 - 121039945 CTTCTTCCTTTCTG-GT--------GGATCAGGG----AACCTACAAG--GTCACCACCTGCTGAGCTGTCAT-GCCAAAGTCCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179566600 77 - 180051392 CTTCCTCCTTTCTC-CTTCCTCCTCGGATCAGGG----AACTTCCAAG--TTCACCGCCTGCTGAGTTGCCAT-GCCAAAGTCCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300408 77 - 181584905 CTTCCTCCTTTCTC-CTTCCTCCTTGGATCAGGG----AACTTCCAAG--TTCACCGCCTGCTGAGTTGCCAT-GCCAAAGTCCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306447 77 -   1764207 CTTCCTCCTTTCTC-CTTCCTCCTTGGATCAGGG----AACTTCCAAG--TTCACTGCCTGCTGAGTTGCCAT-GCCAAAGTCCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310745 77 -  16742782 CTTCCTCCTTTCTC-CTTCCTCCTTGGATCAGGG----AACTTCCAAG--TTCACCGCCTGCTGAGTTGCCAT-GCCAAAGTCCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90612155 77 -  91010382 CTTCCTCCTTTCTC-CTTCCTCCTTGGATCAGGG----AACTTCCAAG--TTCACCGCCTGCCGAGTTGCCAT-GCCAAAGTCCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208364 77 -    438239 CTTCCTCCTTTCTC-CTTCCTCCTTGGATCAGGG----AACTTCCAAG--TTCACCGCCTGCTGAGTTGCCAT-GCCAAAGTCCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      238100 77 -    514179 CTTCCTCCTTTCTC-CTTCCTCCTTGGATCAGGG----AACTTCCAAG--TTCACCGCCTGCTGAGTTGCCAT-GCCAAAGTCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897871 69 + 204313951 CTTCCTCCTTCCCG-GT--------GGATTAGAA----AACCTCCGCG--TTCACCAACTGCTGAGCTGTCAT-GCCAAAGTCCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16051150 69 +  16417988 CTTCCTCCTTCCCG-GT--------GGATCAGAA----AACCTCCAGG--TTCACCACCTGCTGAGCTGTCAT-GCCAAAGTCCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      138398 69 +    298490 CTTCCTCTTTCCCG-GT--------GGATCAGAA----AACCTCCAAG--TTCACCAACTGCCGAGCTGTCAT-GCCAAAGTCCA
i cebCap1.NW_016108158v1   I 161 C 0
s aotNan1.NW_018503740v1    25465904 68 -  25620257 CTTCCTCCTTCCCG-GT--------GGATCAG-A----AACCTCCAAG--TTCACCACCTGCTGAGCTGTCAT-GCCAAAGTCCA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1912967 56 -   2165740 CTTC--CCTTCCT------------GGACAAA-----------TCAGG--TTTACCACCTGCAGAGC-GTCCT-GCCAAAGTCCA
i otoGar3.GL873745         C 0 C 0
s canFam3.chr34             11756970 77 +  42124431 TTTTCCCCTTCCTGAGT--------GAATCAGGGCGGAAACCCCCGGGAATTTCCCACCTGCCCAGCTTTCTTGGTTAAAGCCCA
i canFam3.chr34            C 0 I 2251

a score=4131041.000000
s hg38.chr5_KI270793v1_alt    113777 459 +    126136 A-GGGTTTGAGTTCTTTGTTGGG-AAAGGGTTTCTT-T-AAGCCTGAATGGGAAAGTTGAAAATGCCTGTTTTTAAGAGCTTTGGGGGTGACACAAAGTGTGGAAGAACAGCAGCTACTGCGGGCTCCGTCCTCAGATTCAGCCCCAGATGTTTGGTGCAGAGGACACGGGGCTGACCAGACGGTGAAGGCAGATTCCCCTTAG-AACCCGGCCCTCATGGGGCCCTCAGCGGGCCGTACCACTCCTTCCCC----ACCTACTGGA---TGTGGGAGCCACTGGGCAGGACTGCCTGAGG-GGCCACAGTGAGCAAAGCCCCC----GACAGGCAAGA--CCCGAT-GGGCCTCG-GGGGG-CAGGGTGGGCCCCAGGAA-GGGGGAGCCAGCGGCCACTGGTCTTGGGTGACTCTGCAGAGGTGAGGAGGGAGGGCACAGGCCGGAGGCTGGGCCTCA--GAGCCCCCTGAGGGACAGAGCCC
s panTro5.chr5             181379788 460 - 181907262 A-GGGTTTGAGTTCTTTGTTGGG-AAAGGGTTTCTT-T-AAGCCTGAATGGGAAAGTTGAAAATGCCTGTTTTTAAGAGCTTTGGGGGTGACACAAAGTGTGGAAGAACAGCAGCTACTGCGGGCTCCGTCCTCAGATTCAGCCCCAGATGTTTGGTGCAGGGGACATGGGGCTGACCGGACGGCGAAGGCAGATTCCCCTTAG-GACCCAGCCCTCATGGGGCCCTCAGCGGGCCGTACCACTCCTTCCCC----ACCTACTGGA---TGTGGGAGCCACTGGGCAGGACTGCCTGAGG-GGCCGCAGTGAGCAAAGCCCCT----GACAGGCAAGA--CCCGAT-GGGCCTCG-GGGGGGCAGGGTGGGCCCCAGGAA-GGGGGAGCCAGCGGCCACTGGTCTTGGGTGACTCTGCAGAGGTGAGGAGGGAGGGCACAGGCCGGAGGCTGGGCCTCA--GAGCCCCCTGAGGGACAGAGCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098437 460 - 183735486 A-GGGTTTGAGTTCTTTGTTGGG-AAAGGGTTTCTT-T-AAGCCTGAATGGGAAAGTTGAAAATGCCTGTTTTTAAGAGCTTTGGGGGTGACACAAAGTGTGGAAGAACAGCAGCTACTGCGGGCTCCGTCCTCAGATTCAGACCCAGATGTTTGGTGCAGGGGACACGGGGCTGACCGGACGGCGAAGGCAGATTCCCCTTAG-AACCCAGCCCTCATGGGGCCCTCAGCGGGCCGTACCACTCCTTCCCC----ACCTACTGGA---TGTGGGAGCCACTGGGCAGGACTGCCTGAGG-GGCCGCAGTGAGCAAAGCCCCC----GACAGGCAAGA--CCCGAT-GGGCCTCG-GGGGGGCAGGGTGGGCCCCAGGAA-GGGGGAGCCAGCGGCCACTGGTCTTGGGTGACTCTGCAGAGGTGAGGAGGGAGGGCACAGGCCGGAGGCTGGGCCTCA--GAGCCCCCTGAGGGACAGAGCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      192707 461 +    698298 A-GGGTTTGAGTTCTTTGTTGGG-AAAGGGTTTCTT-T-AAGCCTGAATGGGAAAGTTGAAAATGCCTGTTTTTAAGAGCTTTGGGGGTGACACAAGGTGTGGAAGAACAGCAGCTACTGCGGGCTCCGTCCTCAGATTCAGCTCCAGATATTTGGTGCAGAGGACACCGGGCTGACTGGACGGTGAAGGCAGATTCCCTTTAGAAACCCGGCCCTCATGGGGCCCTCAGCGGGCCGTACCACTCCTTCCCC----ACCTACTGGA---TGTGGGAGCCACTGGGCAGGACTGCCTGAGG-GGCCACAGTGAGCAAAGCCCCT----GACAGGCAAGA--CCCGACGGGGCCTCG-GGGGG-CAGGGTGGGCCCCCGGAA-GGGGGAGCCAGCGGCCACTGGTCTTGGGTGACTCTGCAGAGGTGAGGAGGGAGGGCACAGGCCGGAGGCTGGGCCTCA--GAGCCCCCTGAGGGACAGAGCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120609960 449 - 121039945 A-GGGTTTGAGTTCTCTGCTGGGAAAAGGGTTTCTCGT-AAGCCTGAATGGGAAAGTTGAAAACGGCTGTTTTTAAGAGCTTTGGGGGTGACACAAAGTGTGGAAGAACAGCAGCTCCTGGGGGCTCTGTCCTCAGATTCAGCCCCAGATGTTTGGTGCAGAGGACACAGGGCTGACTGCATGGTGAAGACAGATTCCCCTTAG-AACCC-----------GGCCCTCAGCGGGCCATACCACTCCTTCCCC----ACCTACT-GC---CGTGGGAGCCACTGGGCAGGGCTGCCCGAGG-GGCCACAGTGAGCAAAGCCCCC----GATAGGCGAGA--CCCGAT-GGGCCTCA-GGGAG-CAGGGTGGGCCCCAGGAA-GGGGGATCCAGCGGCCACTGGTCTTGGGTGACTCTGCGGAGGTGAGGAGGGAGGGCGCAGGCCGGAGGCTGGGCCTCA--GAGCCCCCTGAGGGACAGAGCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179566677 460 - 180051392 A-GGGTTTGAGCTCTCTGTTGGG-AAAAGATTTCTTGC-AAGTCTGAATTCGAAAGTTGAAAACACCTGTTTCTAAGAGCTTTGGGGGTGATACAAAGTGCGGAAGAACAGCAGCTCCTGGGGGCTCTGTCCTCAGACTCAGCCTCAGATGTTTGGTGCAGAGGACACGGGGCTGACCGGACAGTGAAGACAGATTCCCCTTAG-AACCCGGTCCTCAGAAGGCCCTCAGTGGGCCATAGCACTCCTTCCCT----ACCTACTGGC---TGTGGGACCCACTGGGCAGGGCTGCCCGAGG-GACCATAGTGAGCAAAGCCCCC----GACAGGCAAGG--CCCGAT-GGGCCTCG-GGGGG-CA-GGTGGGCCCCAGGAGTGGTGGAGCCAGTGGCCACTGGTCTTGGGTGACTCTGCGGAGCTGGGGAGGGAGGGCGCAGGCTGGAGGCCGGGCCTCA--GAGCCCCCCGAGGGACAGAGCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300485 459 - 181584905 A-GGGTTTGAGCTCTCTGTTGGG-AAAAGATTTCTTGC-AAGTCTGAATTCGAAAGTTGAAAACACCTGTTTCTAAGAGCTTTGGGGGTGATACAAAGTGCGGAAGAACAGCAGCTCCTGGGGGCTCTGTCCTCAGATTCAGCCTCAGATGTTTGGTGCAGAGGACACGGGGCTGACCGGACAGTGAAGACAGATTCCCCTTAG-AACCCGGTCCTCAG-AGGCCCTCAGTGGGCCATAGCACTCCTTCCCC----ACCTACTGGC---TGTGGGACCCACTGGGCAGGGCTGCCCGAGG-GACCACAGTGAGCAAAGCCCCC----GACAGGCAAGG--CCCGAT-GGGCCTCG-GGGGG-CA-GGTGGGCCCCAGGAGTGGTGGAGCCAGTGGCCACTGGTCTTGGGTGACTCTGCGGAGCTGGGGAGGGAGGGCGCAGGCTGGAGGCCGGGCCTCA--GAGCCCCCCGAGGGACAGAGCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306524 460 -   1764207 A-GGGTTTGAGCTCTCTGTTGGG-AAAAGATTTCTTGC-AAGTCTGAATTCGAAAGTTGAAAACACCTGTTTCTAAGAGCTTTGGGGGTGATACAAAGTGCGGAAGAACAGCAGCTCCTGGGGGCTCTGTCCTCAGATTCAGCCTCAGATGTTTGGTGCAGAGGACACGGGGCTGACCGGACAGTGAAGACAGATTCCCCTTAG-AACCCGGTCCTCAGAAGGCCCTCAGTGGGCCATAGCACTCCTTCCCC----ACCTACTGGC---TGTGGGACCCACTGGGCAGGGCTGCCCGAGG-GACCACAGTGAGCAAAGCCCCC----GACAGGCAAGG--CCCGAT-GGGCCTCG-GGGGG-CA-GGTGGGCCCCAGGAGTGGTGGAGCCAGTGGCCACTGGTCTTGGGTGACTCTGCGGAGCTGGGGAGGGAGGGCGCAGGCTGGAGGCCGGGCCTCA--GAGCCCCCCGAGGGACAGAGCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      310822 460 -  16742782 A-GGGTTTGAGCTCTCTGTTGGG-AAAGGATTTCTTGC-AAGTCTGAATTCGAAAGTTGAAAACACCTGTTTCTAAGAGCTTTGGGGGTGATACAAAGTGCGGAAGAACAGCAGCTCCTGGGGGCTCTGTCCTCAGATTCAGCCTCAGATGTTTGGTGCAGAGGACACGGGGCTGACCGGACAGTGAAGACAGATTCCCCTTAG-AACCCGGTCCTCAGAAGGCCCTCAGTGGGCCATAGCACTCCTTCCCC----ACCTACTGGC---TGTGGGACCCACTGGGCAGGGCTGCCCGAGG-GACCACAGTGAGCAAAGCCCCC----GACAGGCAAGG--CCCGAT-GGGCCTCG-GGGGG-CA-GGTGAGCCCCAGGAGTGGTGGAGCCAGTGGCCACTGGTCTTGGGTGACTCTGcggagctggggagggagggcgcaggccggaggccggGCCTCA--GAGCCCCTCGAGGAACAGAGGCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90612232 461 -  91010382 A-GGGTTTGAGCTCTCTGTTGGG-AAAGGATTTCTTGC-AAGTCTGAATGGGAAAGTTGAAAACACCTGTTTCTAAGAACTTTGGGGGTGATACAAAGTGCGGAAGAACAGCAGCTCCTGGGGGCTCTGTCCTCAGATTCAGCGCCAGATGTTCGGTGCAGAGGACACCGGGCTGACCAGACAGTGAAGACAGATTCCCCTTAG-AACCCGGTCCTCAGAAGGCCCTCAGTGGGCCGTAGCACTCCTTCCCC----ACCTACCGGC---TGTGGGACCCACTGGGCAGGGCTGCCCGAGG-GACCACAGTGAGCAAAGCCCCC----AACAGGCAAGG--CCCAAT-GGGCCTCG-GGGGG-CAGGGTGGGCCCCAGGAGTGGTGGAGCCAGTGGCCACTGGTCTTGGGTGACTCTGCGGAGCTGGGGAGGGAGGGTGCAGGCCGGAGGCTGGGCCTCA--GAGCCCCCCAAGGGACAGAGCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208441 460 -    438239 A-GGGTTTGAGCTCTCTGTTGGG-AAAGGATTTCTTGC-AAGTCTGAATTCGAAAGTTGAAAACACCTGTTTCTAAGAGCTTTGGGGGTGATACAAAGTGCGGAAGAACAGCAGCTCCTGGGGGCTCTGTCCTCAGATTCAGCCTCAGATGTTTGGTGCAGAGGACACGGGGCTGACCGGACAGTGAAGACAGATTCCCCTTAG-AACCCGGTCCTCAGAAGGCCCTCAGTGGGCCATAGCACTCCTTCCCC----ACCTACTGGC---TGTGGGACCCACTGGGCAGGGCTGCCCGAGG-GACCACAGTGAGCAAAGCCCCC----GACAGGCAAGG--CCCGAT-GGGCCTCG-GGGAG-CA-GGTGGGCCCCAGGAGTGGTGGAGCCAGTGGCCACTGGTCTTGGGTGACTCTGTGGAGCTGGGGAGGGAGGGCGCAGGCCGGAGGCCGGGCCTCA--GAGCCGCTCGAGGGACAGAGCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      238177 463 -    514179 A-GGGTTTGAGCTCTCTGTTGGG-AAAGGATTTCTTGT-AAGTCTGAATGGGAAAGTTGAAAACACCTGTTTCTGAGAGC-TTGGGGGTGATACAAAGTGCGGAAGAACAGCAGCTCCGGGGGGCTCTGTCTTCAGATTCAGCCCCAGATGTTTGGTGCAGAGGACACGGGGCTGACAGGACAGTGAAGACAGATTCCCCTTAG-AACCCGGTCCTCAGCAGGCCCTCAGTGGGCCGTAGCACTCCTTCCCCACCTACCTACTGGC---TGTGGGACCCACTGGGCAGGGCTGCCCGAGG-GACCACAGTGAGCAAAGCCCCT----GACAGGCAAGA--CCCGAT-GGCCCTCATGGGGG-CAGGGTGGGCCCCAGGAATGGTGGAGCCAGTGGCCGCTGGTCTTGGGTGA--CTGCGGAGCTGGGGAGGGAGGGCGCAGGCCGGAGGCTGGGCCTCA--GAGCCCCCCAAGGGACAGATCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203897940 441 + 204313951 G-GGGTTTGAGTTCTCTGTCGGG-AAAGGGTTTCTT-----GCCTGAATGGG-AAGTTGAAAATGCCTGTTTTTAAGAGCTTTGGGGGTGACACAAAGTGTGGGAGATCAGCAGCTCCTGGGGGCTCTGTCCTTAGACTCAGCCCCAGATGTTTGGTGCAGAGGACACAGGGCCGATCAGCTGGTGAAGACTCATTCCCCTTAG-AACCT-----TCCCTGGGCCCTCAGC-GGCTGCACCA-TCCCTCCCC----ACCTGCCAGC---TGTGGGCCCCACTGGGCAGGGCTG----------CCACCATGAGCAAAGCCCCA----GACAAGCCAGA--CCTGAT-GGGCCCCATGGGCG-CAGGGTGGGCCCCAGGCAGGGTGGAGCCAGTGGCCACTGGTCTTGGGTGGCACTGCAGAGGTGGGGAGGGAGGGGGCAGGCTGGCGGCTGGGCCCCA--GAACCCCTCAAGGGACAGAGCCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16051219 442 +  16417988 G-GGGTTTGAGTTCTCTGTCGGG-AAAGGGTTTCTTGT-AAGCCTGAATGGGAAAGTTGAAAATGCCTGTTTTTAAGAGCTTTGGGGGTGACACAAAGTGTGGAAGATCAGCAGCTCCTGGGGGCTCCGTCCTTAGACTCAGCCCCAGACGTTTGGTGCAGAGGACACAGGGCCGATCAGCTGGTGAAGACTCATTCCCCTTAG-AACCC-----TCTCTGGGCCCTCAGC-GGCCACACCA-TCCCTCCCT----GCCTGCCAGC---TGTGGGCCCCACTGGGCAGGGCTG----------CTACCATGAGCAAAGCCCCA----GACGGGCCAGA--CCCGAT-GGGCCCCCTGGGGA-CAGGGCGGGCCCCA-GCAGGGTGGAGCCAGTGGCCACTGGTCTTGGGGGACACTGCAGGGGT-GGGAGGGAGGGGGCAGGCCAGAGACTGGGCCCCA--GAGCCCCTC--GGGACAGAGCCC
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      138467 443 +    298490 G-GGGTTTGAGTTCTCTGTCGGG-AAAGGGTTTCTTGT-AAGCCTGAATGGGAAAGTTGAAAATGCCTGTTTTTAAGAGCTTTGGGGGTGACACAAAGTGTGGAAGATCAGCAGCTCCTGGGGGCTCCGTCCTTAGACTCAGCCCCAGATGTTTGGTGCAGAGGACACAGGGCCGATCAGCTGGTGAAGACTCATTCCCCTGAG-AACCC-----TCCCGGGGCCCTCAGC-GGGCGCACCA-TCCCTCCC-----GCCTACCAGC---TGTGGGCCCCACTGGGCAGGGCTG----------CCACCATGAGCAAAG-CCCA----GACGGGCCAGA--CCCGAT-GGGCTCCATGGGGG-CAGGGTGGGCCCCAGGCAGGGTGGAACCAGTGGTCACTGGTCTTGGGTGACGCTGCAGAGGTGGGGAGGGA-GGGACAGGCTGGAGGCTGGGCCCCA--GAGCCCCTTGAGGGACAGAGCCC
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25465972 445 -  25620257 G-GGGTTTGAGTTCTCTGTCGGG-AAA-GGTTTCTCGT-AAGCCTGAATGGGAAAGTTGAAAATGCCTGTTTTTAAGAGCTTTGGGGGTGACACAAAGTGTGGAAGATCAGCAGCTCCTGGGGGCTCCGTCCTCAGACTCAGCCCCAGATGTTTGGCGCGGAGGACACAGGGCCGATCAGCTCGTGAAGACTCATTCCCCTTAG-AACCC-----TCCCCGGGCCCTCAGC-AGCCGCACCA-TCCCTCCCC----GCCTGCCAGC---TGTGGGCCCCACTGGGCAGGGCTG----------CCACCATGAGCAAAGCCCCA----GACGGGCCAGA--CCTGAT-GGGCCCCATGGCGG-CAGGGTGGGCCCCAGGCAGGGTGGAGCCAGTGGCCACTGGTCTTGGGTGCCACTGCAGAGGTGGGGAGGGAGGGGGCAGGCCGGAGGCTGGGCCCCA--GAGCCCCTCGAGGGACAGAGCCC
i aotNan1.NW_018503740v1   C 0 I 17
s otoGar3.GL873745           1913023 397 -   2165740 ACTTGTCTGAGTACGCAGCTGGG-AAAGGGCTTCTTGTAAAGGCAGATTAGGAAAGCTGAAAAGATCCATTTCTAAGAGCTTTTGGGATGACACAAA-TATGGCAAACCACCCACTCTGGCAGGCTCCATTCTTAGAGTTAGC-TCAGAAGTTGGGCGCATAGA------------------------------------TCTG-CACCT------------GTCCTCTGC-----------------CCCC----AACTCCCAGCAGATGT-GGCCCCAGCAGGCAGGGCTGCCCGTGGAGGTTGCAGTGAGCCTGCCCACCCTGTGGCTGGCAAGAACCCTGGC-ACAGCTTC-ACTGG-CAGGG------CCAAG---GGCATGGCCAGTTGGTTTTGATCTCAAGCAG-GCTGACTGACAGAGCAGGAGGGATACAGGCTGCACCTGGATCCTGAAGGAGCTGCTTGAGGCACAGGGCCC
i otoGar3.GL873745         C 0 I 4
e canFam3.chr34             11757047 2251 +  42124431 I

a score=45853.000000
s hg38.chr5_KI270793v1_alt    114236 9 +    126136 CTGGAGGGA
s panTro5.chr5             181380248 9 - 181907262 CTGGAGGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098897 9 - 183735486 CTGGAGGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      193168 9 +    698298 CTGGAGGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120610409 9 - 121039945 CTGGAGGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179567137 9 - 180051392 CTGGACTGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300944 9 - 181584905 CTGGACTGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306984 9 -   1764207 CTGGACTGA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      311282 9 -  16742782 CTGGACTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90612693 9 -  91010382 CTGGACTGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208901 9 -    438239 CTGGACTGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      238640 9 -    514179 CTAGACTGA
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1913424 9 -   2165740 CTGGGAGGA
i otoGar3.GL873745         I 4 I 1441
e aotNan1.NW_018503740v1    25466417 17 -  25620257 I
e cebCap1.NW_016108158v1      138910 0 +    298490 C
e saiBol1.JH378155          16051661 0 +  16417988 C
e calJac3.chr2             203898381 0 + 204313951 C
e canFam3.chr34             11757047 2251 +  42124431 I

a score=357109.000000
s hg38.chr5_KI270793v1_alt    114245 53 +    126136 CAGCCCTGGCGGCACAGAGCCTGGGAGACCTCAGGTCAGGGAGGAAGAGGGAG----
s panTro5.chr5             181380257 53 - 181907262 CAGCCCTGGCGGCACAGAGCCCGGGAGACCTCAGGTCAGGGAGGAAGAGGGAG----
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098906 53 - 183735486 CAGCCCTGGCGGCACAGAGCCCGGGAGACCTCAGGTCAGGGAGGAAGAGGGAG----
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      193177 53 +    698298 CAGCCCTGGCGGCACAGAGCCCGGGACACCTCAGGTCAGGGAGGAAGAGGGAG----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120610418 53 - 121039945 CAGCCCTGGCTGCACAAAGCCTGGGAGACCGCAGGTCAGGGAGGAAGAGGGAG----
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179567146 53 - 180051392 CAGCCCTGGCGGCACACAGCCTGGGAGACCGCAGGTCAGGGAGGAAGAGGGAG----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181300953 53 - 181584905 CAGCCCTGGCGGCACACAGCCTGGGAGACCGCAGGTCAGGGAGGAAGAGGGAG----
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      306993 53 -   1764207 CAGCCCTGGCGGCACACAGCCTGGGAGACCGCAGGTCAGGGAGGAAGAGGGAG----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      311291 53 -  16742782 CAGCCCTGGCGGCACACAGCCTGGGAGACCGCAGGTCAGGGAGGAAGAGGGAG----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90612702 53 -  91010382 CAGCCCTGGTGGCACAGAGCCTGGGAGACCGCAGGTCAGGGAGGAAGAGGGAG----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208910 53 -    438239 CAGCCCTGGCGGCACACAGCCTGGGAGACCGCAGGTCAGGGAGGAAGAGGGAG----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      238649 53 -    514179 CAGCCCTGGTAGCACAGAGCCTGGGAGACCGCAGGTCAGGGAGGAAGAGGGAG----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203898381 35 + 204313951 ----------------------GGGAGACCGCCGGTCTGGGAGGAAGAGGAAGTGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16051661 35 +  16417988 ----------------------GGGAGACCACCGGTCTGGGAGGAAGAGGAAGTGTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      138910 33 +    298490 ----------------------GGGAGACCGCCGGTCTGGGAGGAAGAGGAA--GTG
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25466417 17 -  25620257 I
e otoGar3.GL873745           1913433 1441 -   2165740 I
e canFam3.chr34             11757047 2251 +  42124431 I

a score=10920.000000
s hg38.chr5_KI270793v1_alt    114298 1 +    126136 T
s panTro5.chr5             181380310 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098959 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      193230 1 +    698298 T
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120610471 1 - 121039945 T
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179567199 1 - 180051392 T
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181301006 1 - 181584905 T
i macFas5.chr6             C 0 I 136
s macNem1.NW_012012389v1      307046 1 -   1764207 T
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      311344 1 -  16742782 T
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90612755 1 -  91010382 T
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      208963 1 -    438239 T
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      238702 1 -    514179 T
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203898416 1 + 204313951 T
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16051696 1 +  16417988 T
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      138943 1 +    298490 T
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25466434 1 -  25620257 T
i aotNan1.NW_018503740v1   I 17 C 0
e otoGar3.GL873745           1913433 1441 -   2165740 I
e canFam3.chr34             11757047 2251 +  42124431 I

a score=56010.000000
s hg38.chr5_KI270793v1_alt    114299 5 +    126136 GTGTG
s panTro5.chr5             181380311 5 - 181907262 GTGTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098960 5 - 183735486 GTGTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      193231 5 +    698298 GTGTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120610472 5 - 121039945 GTGCG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179567200 5 - 180051392 GTGTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181301143 5 - 181584905 GTGTG
i macFas5.chr6             I 136 C 0
s macNem1.NW_012012389v1      307047 5 -   1764207 GTGTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      311345 5 -  16742782 GTGTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90612756 5 -  91010382 GTGTG
i chlSab2.chr4             C 0 I 2
s manLeu1.NW_012110441v1      208964 5 -    438239 GTGTG
i manLeu1.NW_012110441v1   C 0 I 340
s colAng1.NW_012118799v1      238703 5 -    514179 GTGTG
i colAng1.NW_012118799v1   C 0 I 2
s calJac3.chr2             203898417 5 + 204313951 GTGTG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16051697 5 +  16417988 GTGTG
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      138944 5 +    298490 GTGTG
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25466435 5 -  25620257 GTGTG
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1913433 1441 -   2165740 I
e canFam3.chr34             11757047 2251 +  42124431 I

a score=71834.000000
s hg38.chr5_KI270793v1_alt    114304 12 +    126136 AAGCGTCTTGGA
s panTro5.chr5             181380316 12 - 181907262 AAGCGTCTCGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098965 12 - 183735486 AAGCGTCTCGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      193236 12 +    698298 AAGCGTCTCGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120610477 12 - 121039945 AAGCATCTCGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179567205 12 - 180051392 AAGCCTCTGGGA
i rheMac8.chr6             C 0 I 142
s macFas5.chr6             181301148 12 - 181584905 AAGCGTCTGGGA
i macFas5.chr6             C 0 I 6
s macNem1.NW_012012389v1      307052 12 -   1764207 AAGCCTCTGGGA
i macNem1.NW_012012389v1   C 0 I 140
s cerAty1.NW_012009470v1      311350 12 -  16742782 AAGCGTCTGGGA
i cerAty1.NW_012009470v1   C 0 I 374
s chlSab2.chr4              90612763 12 -  91010382 AAGCGTCTGGGA
i chlSab2.chr4             I 2 I 6
s colAng1.NW_012118799v1      238710 12 -    514179 AAGCGTCTGGGA
i colAng1.NW_012118799v1   I 2 I 6
s calJac3.chr2             203898422 12 + 204313951 AAGTGTTTCCAA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16051702 12 +  16417988 AAGTGTTTCCAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      138949 12 +    298490 AAGAGTTTCCAA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25466440 12 -  25620257 AAGTGTTTCCAA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1913433 1441 -   2165740 I
e canFam3.chr34             11757047 2251 +  42124431 I
e manLeu1.NW_012110441v1      208969 340 -    438239 I

a score=70106.000000
s hg38.chr5_KI270793v1_alt    114316 7 +    126136 ACCGGGA
s panTro5.chr5             181380328 7 - 181907262 ACCGGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098977 7 - 183735486 ACCGGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      193248 7 +    698298 ACCGGGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120610489 7 - 121039945 ACCGGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179567359 7 - 180051392 ACCGGGA
i rheMac8.chr6             I 142 C 0
s macFas5.chr6             181301166 7 - 181584905 ACCGGGA
i macFas5.chr6             I 6 C 0
s macNem1.NW_012012389v1      307204 7 -   1764207 ACCGGGA
i macNem1.NW_012012389v1   I 140 C 0
s cerAty1.NW_012009470v1      311736 7 -  16742782 ACCGGGA
i cerAty1.NW_012009470v1   I 374 C 0
s chlSab2.chr4              90612781 7 -  91010382 ACCGGGA
i chlSab2.chr4             I 6 C 0
s manLeu1.NW_012110441v1      209309 7 -    438239 ACCGGGA
i manLeu1.NW_012110441v1   I 340 C 0
s colAng1.NW_012118799v1      238728 7 -    514179 ACCGGGA
i colAng1.NW_012118799v1   I 6 C 0
s calJac3.chr2             203898434 7 + 204313951 ACCGGGA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16051714 7 +  16417988 ACTGGGA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      138961 5 +    298490 AC--GGA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25466452 7 -  25620257 ACCGGGA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1913433 1441 -   2165740 I
e canFam3.chr34             11757047 2251 +  42124431 I

a score=3589448.000000
s hg38.chr5_KI270793v1_alt    114323 431 +    126136  
s panTro5.chr5             181380335 429 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183098984 429 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      193255 431 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120610496 427 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179567366 397 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181301173 397 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      307211 397 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      311743 397 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90612788 397 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      209316 397 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      238735 454 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203898441 465 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16051721 461 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      138966 464 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25466459 479 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s canFam3.chr34             11759298 423 +  42124431  
i canFam3.chr34            I 2251 C 0
e otoGar3.GL873745           1913433 1441 -   2165740 I

a score=1079420.000000
s hg38.chr5_KI270793v1_alt    114754 182 +    126136 TGGGAAGTTAAAGCTTCCTGAGAAGGAGCTG-----------TCAGGAACTACTTCCTCATTC----TTACTGTGTAC---CATCACA-GGGGGAGAAGGCG----------------AGGGTGGCCC------GGGGCTGCTGT--CTGCCCACCAGAGCTGT-------------CCCTGGGCCCCTGA------------------------GGAGCACGTGTGT-----------CCCATG-------GAGGTGGCATGTGTGTGCTGTGAAGTCA
s panTro5.chr5             181380764 182 - 181907262 TGGGAAGTTAAAGCTTCCTGAGAAGGAGCTG-----------TCAGGAACTAGTTCCTCATTC----TTACTGTGTAC---CATCACA-GGGGGAGAAGGCG----------------AGGGTGGCCC------GGGGCTGCTGT--CTGCCCACCAGAGCTGT-------------CCCTGGGCCCCTAA------------------------GGAGCACATGTGT-----------CCCATG-------GAGGCGGCATGTGTGTGCTGTGAAGTCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183099413 182 - 183735486 TGGGAAGTTAAAGCTTCCTGAGAAGGAGCTG-----------TCAGGAACTAGTTCCTCATTC----TTACTGTGTAC---CATCACA-GGGGGAGAAGGCG----------------AGGGTGGCCC------GGGGCTGCTGT--CTGCCCACCAGAGCTGT-------------CCCTGGGCCCCTAA------------------------GGAGCACATGTGT-----------CCCATG-------GAGGCGGCATGTGTGTGCTGTGAAGTCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      193686 181 +    698298 TGGGAAGTTAAAGCTTCCTGAGATGGAGCTG-----------TCAGGAACTAGTTCCTCATTC----TTAGTGTGTAC---CATCACA-GGGGGAGAAGGCG----------------AGGGTGGCCC------GGGGCTGCTAT--CTGCCTACCAGAGCTGT-------------CCCTGGGCCCCTGA------------------------GGAGCACGTGTGT------------CCATG-------GAGGCGGCATGTGTGTGCTGTGAACTCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120610923 182 - 121039945 TGGGAAGTTAAAGCTTCCTGAGAAGGAGCTG-----------TCAGGAACTAGTTCCTCCTTC----TTACTGTGTAC---CATCACA-GGGGGAGAAGGCG----------------AGGGTGGCCC------GGGACTGCTGT--CTGCCCACCAGAGCTGT-------------CCCTGGGCCCCTGA------------------------GGAGCACGTGTGT-----------CCCATG-------GAGGCGGCATGTGTGTGCTGTGAAGTCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179567763 133 - 180051392 -------------------------------------------------------------------TTACTGTGTACCAACATCACA-GGGGGAGAAGGCG----------------AGGGGGGCCC------AGGGCTGCTGT--CTGCCCACCAGAGCTGT-------------CCCTGAGCCCCTGA------------------------GGAGCACATGTGT-----------TGCATG-------GAGGCGGCAGGTGTGTGCTGGGAAGTCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181301570 133 - 181584905 -------------------------------------------------------------------TTACTGTGTACCAACATCACA-GGGGGAGAAGGCG----------------AGGGGGGCCC------AGGGCTGCTGT--CTGCCCACCAGAGCTGT-------------CCCTGGGCCCCTGA------------------------GGAGCACATGTGT-----------TGCATG-------GAGGCGGCAGGTGTGTGCTGGGAAGTCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      307608 133 -   1764207 -------------------------------------------------------------------TTACTGTGTACCAACATCACA-GGGGGAGAAGGCG----------------AGGGGGGCCC------AGGGCTGCTGT--CTGCCCACCAGAGCTGT-------------CCCTGGGCCCCTGA------------------------GGAGCACATGTGT-----------TGCATG-------GAGGCGGCAGGTGTGTGCTGGGAAGTCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      312140 133 -  16742782 -------------------------------------------------------------------TTACTGTGTACCAACATCACA-GGGGGAGAAGGCG----------------AGGGGGGTCC------AGGGCTGCTGT--CTGCCCACCAGAGCTGT-------------CCCTGGGCCCCTGA------------------------GGAGCACAAGTGT-----------TGCATG-------GAGGCAGCAGGTGTGTGCTGGGAAGTCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90613185 131 -  91010382 -------------------------------------------------------------------TTACTGTGTACCAACATCACA-GGGGGAGAAGGCG----------------AGGGGGGCCC------AGGGCTGCTGT--CTGCCCACTAGAGCTGT-------------CCCTGGGCCCCTGA------------------------GGAGCAC--GTGT-----------TGCATG-------GAGGCGGCAGATGTGTGCTGGGAAGTCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      209713 133 -    438239 -------------------------------------------------------------------TTACTGCGTACCAACATCACA-GGGGGAGAAGGCG----------------AGGGGGGTCC------AGGGCTGCTGT--CTGCCCACCAGAGCTGT-------------CCCTGGGCCCCTGA------------------------GGAGCACGTGTGT-----------TGCATG-------GAGGTGGCAGGTGTGTGCTGGGAAGTCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      239189 189 -    514179 TGGGAAGTTAAAGCTTTCTGAGAAGGAGCTG-----------CCAGGAACTAGGAACTAGTTCCTCCTTACTGTGTACCAACATCACA-GGGGGAGAAGGCG----------------AGGGGGGCCC------GGGGCTGCTGT--CTGCCCACCAGAGCTGT-------------CCCTGGGCCCCTGA------------------------GGAGCACGTCTGT-----------TGCGTG-------GAGGCAGCATGTGTGTGCTGGGAAGTCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203898906 163 + 204313951 TGGGAAGTCAAAGGTTCCTGAGAAGGAGCCA-----------CCTGGGACTAG--------------TT--------CCAACTTCACC--GGGGAGACTGCG----------------GAGGTGGCT--------GAGCTACTGT-CCTGCCCACCAGGGCTGT-------------CCCTGCGCCCCTAA------------------------GGAGCACGTGTGT-------------CATG-------CGGGAGGCATGTGCGTGCTGGGAAGTCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16052182 164 +  16417988 TGGGAAGTCAAAGGTTCCTGAGAAGGAGCCA-----------CCTGGAACTAG--------------TT--------CCAGCGTCACC-AGGGGAGACAGCG----------------GAGGTGGCC--------GAGCTACTGT-CCTGCCCACCAGAGCTGT-------------CCCTGCACCCCTAA------------------------GGAGCACGTGCGT-------------CATG-------GGGGAGGCATGTGCGTGCTGTGAAGTCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      139430 164 +    298490 TGGGAAGTCAAAGGTTCCTGAGAAGGAGCCA-----------CCTGGAACTAG--------------TT--------CCAACGTCACC-AGGGGAGACGGCG----------------GAGGTGGCC--------AAGCTACTGT-CCTGCCCACCAGAGTTGT-------------CCCTGCACCCCTAA------------------------GGAGCACGTGTGT-------------CATG-------GGGGAGGCATGTGCGTGCTGTGAAGTCA
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25466938 164 -  25620257 TGGGAAGTCAAAGGTTCCTGAGAAGGAGCCA-----------CCTGGAACTAG--------------TT--------CCAACGTCACC-AGGGGAGACAGCG----------------GAGGTGGCC--------GAGCTACTGT-CCTGCCCACCAGAGCTGT-------------CCCTGCACCCCTAA------------------------GGAGCATGTGTGT-------------CATG-------GGAGAGGCATGTGCGTGCTGTGAAGTCA
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1914874 243 -   2165740 TGGGGAGTTAAAG------GAGACAGGACTGCCCACTCTCCTCCCAACACTGC--------------ATGGCGCCTGTCACTGTCACTTAGGGGAGGAGGTG---------------TGGGGCTGCCCTTCTTGGGGGGCGCCAC--CTGCCCTCCAGAGCCACTGGCATTGCTTTGCCCTGGGCTCTTGATGGTCATGCGAGTATGCCAAGGAGGAGGCACGTCTGTGCTGTTCTAGTGGCATGTGCACACGTGAGGGCATGTGTGTGCTGAGGAGGCA
i otoGar3.GL873745         I 1441 C 0
s canFam3.chr34             11759721 133 +  42124431 -----------------------------------------------------------TGCC----TT------------CGTCA---GAGGGAGCAGGGGGCCTTGCTCTTCAGGCAGCCTGACCC------GGAGCTGACGGCCCTGCCCATCAGAGC----------------CCCTGAGATC----------------------------GGCCAACCAGGGC------------CCATG-------GGGCATGTGTGTGGGTGCTGTGGAGGCA
i canFam3.chr34            C 0 N 0

a score=5370781.000000
s hg38.chr5_KI270793v1_alt    114936 601 +    126136  
s panTro5.chr5             181380946 601 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183099595 601 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      193867 599 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120611105 600 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179567896 597 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181301703 597 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      307741 597 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      312273 598 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90613316 690 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      209846 596 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      239378 596 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203899069 572 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16052346 586 +  16417988  
i saiBol1.JH378155         C 0 I 298
s cebCap1.NW_016108158v1      139594 570 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25467102 567 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1915117 566 -   2165740  
i otoGar3.GL873745         C 0 C 0

a score=22920.000000
s hg38.chr5_KI270793v1_alt    115537 2 +    126136 CT
s panTro5.chr5             181381547 2 - 181907262 CT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183100196 2 - 183735486 CT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      194466 2 +    698298 CT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120611705 2 - 121039945 CT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179568493 2 - 180051392 CT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181302300 2 - 181584905 CT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      308338 2 -   1764207 CT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      312871 2 -  16742782 CT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90614006 2 -  91010382 CT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      210442 2 -    438239 CT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      239974 2 -    514179 CT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203899641 2 + 204313951 CT
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      140164 2 +    298490 CT
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25467669 2 -  25620257 CT
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1915683 2 -   2165740 CT
i otoGar3.GL873745         C 0 C 0
e saiBol1.JH378155          16052932 298 +  16417988 I

a score=4452461.000000
s hg38.chr5_KI270793v1_alt    115539 508 +    126136  
s panTro5.chr5             181381549 509 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183100198 509 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      194468 511 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120611707 510 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179568495 502 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181302302 503 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      308340 504 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      312873 499 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90614008 499 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      210444 498 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      239976 498 -    514179  
i colAng1.NW_012118799v1   C 0 I 3
s calJac3.chr2             203899643 513 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16053230 476 +  16417988  
i saiBol1.JH378155         I 298 C 0
s cebCap1.NW_016108158v1      140166 510 +    298490  
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25467671 485 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1915685 559 -   2165740  
i otoGar3.GL873745         C 0 C 0

a score=78360.000000
s hg38.chr5_KI270793v1_alt    116047 8 +    126136 atacatta
s panTro5.chr5             181382058 8 - 181907262 atacatta
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183100707 8 - 183735486 atacatta
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      194979 8 +    698298 atacatta
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120612217 8 - 121039945 atacatta
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179568997 8 - 180051392 atatatta
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181302805 8 - 181584905 atacatta
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      308844 8 -   1764207 atacatta
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      313372 8 -  16742782 atacatta
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90614507 8 -  91010382 atacatta
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      210942 8 -    438239 atacatta
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203900156 8 + 204313951 atacatta
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16053706 8 +  16417988 atacatta
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      140676 8 +    298490 atacatta
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25468156 8 -  25620257 atacatta
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1916244 8 -   2165740 ccacattt
i otoGar3.GL873745         C 0 C 0
e colAng1.NW_012118799v1      240474 3 -    514179 I

a score=247837.000000
s hg38.chr5_KI270793v1_alt    116055 32 +    126136 ttattaattaaggtccacagtttatattaggg
s panTro5.chr5             181382066 32 - 181907262 ttattaattaaggtccacagtttacattaggg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183100715 32 - 183735486 ttattaattaaggtccacagtttacattaggg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      194987 32 +    698298 ttattaattaaggtccacagtttacattaggg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120612225 32 - 121039945 ttattaattaaggtccacggtttacattaggg
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181302813 31 - 181584905 -tattaattgaggtccacagtttacattaggg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      308852 31 -   1764207 -tattaattgaggtccacagtttacattaggg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      313380 31 -  16742782 -tattaattgaggtccacagtttacattaggg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90614515 32 -  91010382 ttattaattgaggtccacagtttacatcaggg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      210950 31 -    438239 -tattaattgaggtccacagtttacattaggg
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203900164 31 + 204313951 ttattaactaaagtccaccatttacattagg-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16053714 32 +  16417988 ttattaactaaagtccaccgttgacattaggg
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      140684 32 +    298490 ttattaactaaagtccaccgtttacattaggg
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25468164 32 -  25620257 ttattaactaaagtccgccatttacatgaggg
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1916252 32 -   2165740 atattaattaaatcccaccatttacatgaggg
i otoGar3.GL873745         C 0 C 0
e colAng1.NW_012118799v1      240474  3 -    514179 I
e rheMac8.chr6             179569005  0 - 180051392 C

a score=2764.000000
s hg38.chr5_KI270793v1_alt    116087  8 +    126136 ctca----------------------------------------------ttct--
s panTro5.chr5             181382098  8 - 181907262 ctca----------------------------------------------ttct--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183100747 54 - 183735486 ctcattcttGATACATTATTATTAAGTTCCACGGTTTACCTTAGGGCTCGTTCt--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195019  8 +    698298 ctca----------------------------------------------ttct--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120612257  8 - 121039945 ctca----------------------------------------------ttct--
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203900195  8 + 204313951 ctga----------------------------------------------ttct--
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      140716  8 +    298490 ctca----------------------------------------------ttct--
i cebCap1.NW_016108158v1   C 0 I 1051
s aotNan1.NW_018503740v1    25468196  8 -  25620257 ctca----------------------------------------------ttct--
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1916284  8 -   2165740 --ca----------------------------------------------cacttg
i otoGar3.GL873745         C 0 C 0
e saiBol1.JH378155          16053746  0 +  16417988 C
e manLeu1.NW_012110441v1      210981  0 -    438239 C
e chlSab2.chr4              90614547  0 -  91010382 C
e cerAty1.NW_012009470v1      313411  0 -  16742782 C
e colAng1.NW_012118799v1      240474  3 -    514179 I
e macNem1.NW_012012389v1      308883  0 -   1764207 C
e macFas5.chr6             181302844  0 - 181584905 C
e rheMac8.chr6             179569005  0 - 180051392 C

a score=5348.000000
s hg38.chr5_KI270793v1_alt    116095 2 +    126136 tg
s panTro5.chr5             181382106 2 - 181907262 tg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183100801 2 - 183735486 tg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195027 2 +    698298 tg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120612265 2 - 121039945 tg
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203900203 2 + 204313951 tg
i calJac3.chr2             C 0 C 0
s aotNan1.NW_018503740v1    25468204 2 -  25620257 tg
i aotNan1.NW_018503740v1   C 0 I 40
s otoGar3.GL873745           1916292 2 -   2165740 tg
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      140724 1051 +    298490 I
e saiBol1.JH378155          16053746 0 +  16417988 C
e manLeu1.NW_012110441v1      210981 0 -    438239 C
e chlSab2.chr4              90614547 0 -  91010382 C
e cerAty1.NW_012009470v1      313411 0 -  16742782 C
e colAng1.NW_012118799v1      240474 3 -    514179 I
e macNem1.NW_012012389v1      308883 0 -   1764207 C
e macFas5.chr6             181302844 0 - 181584905 C
e rheMac8.chr6             179569005 0 - 180051392 C

a score=1971.000000
s hg38.chr5_KI270793v1_alt    116097 2 +    126136 at
s panTro5.chr5             181382108 2 - 181907262 at
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183100803 2 - 183735486 at
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195029 2 +    698298 at
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120612267 2 - 121039945 at
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203900205 2 + 204313951 gt
i calJac3.chr2             C 0 I 396
s otoGar3.GL873745           1916294 2 -   2165740 ct
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25468206 40 -  25620257 I
e cebCap1.NW_016108158v1      140724 1051 +    298490 I
e saiBol1.JH378155          16053746 0 +  16417988 C
e manLeu1.NW_012110441v1      210981 0 -    438239 C
e chlSab2.chr4              90614547 0 -  91010382 C
e cerAty1.NW_012009470v1      313411 0 -  16742782 C
e colAng1.NW_012118799v1      240474 3 -    514179 I
e macNem1.NW_012012389v1      308883 0 -   1764207 C
e macFas5.chr6             181302844 0 - 181584905 C
e rheMac8.chr6             179569005 0 - 180051392 C

a score=26990.000000
s hg38.chr5_KI270793v1_alt    116099 38 +    126136 acattattattaattaaggtccacagtttatattaggg
s panTro5.chr5             181382110 38 - 181907262 acattattattaattaagttccacggtttaccttaggg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183100805 38 - 183735486 acattattattaattgaggtccgcggtttaccttaggg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195031 37 +    698298 acattattattaattaaggtccacggtttac-ttaggg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120612269 38 - 121039945 acattattattaattaaggtccacggtttacattaggg
i nomLeu3.chr6             C 0 C 0
s otoGar3.GL873745           1916296 20 -   2165740 -----------------gctgcccattctgtgttagg-
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25468206 40 -  25620257 I
e cebCap1.NW_016108158v1      140724 1051 +    298490 I
e saiBol1.JH378155          16053746  0 +  16417988 C
e calJac3.chr2             203900207 396 + 204313951 I
e manLeu1.NW_012110441v1      210981  0 -    438239 C
e chlSab2.chr4              90614547  0 -  91010382 C
e cerAty1.NW_012009470v1      313411  0 -  16742782 C
e colAng1.NW_012118799v1      240474  3 -    514179 I
e macNem1.NW_012012389v1      308883  0 -   1764207 C
e macFas5.chr6             181302844  0 - 181584905 C
e rheMac8.chr6             179569005  0 - 180051392 C

a score=14221.000000
s hg38.chr5_KI270793v1_alt    116137 34 +    126136 ctcattcttgatacattattattaat-taaggtcc
s panTro5.chr5             181382148 34 - 181907262 ctGGTTCttgatacattattattaat-tgaggtcc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183100843 34 - 183735486 ctggttcttgatacattattattaat-tgaggtcc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195068 32 +    698298 ctggtttt--gtacattattattaat-taaggtcc
i gorGor5.CYUI01015805v1   C 0 C 0
s otoGar3.GL873745           1916316 18 -   2165740 -----------------ataaataatataacgtcc
i otoGar3.GL873745         C 0 I 386
e aotNan1.NW_018503740v1    25468206 40 -  25620257 I
e cebCap1.NW_016108158v1      140724 1051 +    298490 I
e saiBol1.JH378155          16053746  0 +  16417988 C
e calJac3.chr2             203900207 396 + 204313951 I
e nomLeu3.chr6             120612307  0 - 121039945 C
e manLeu1.NW_012110441v1      210981  0 -    438239 C
e chlSab2.chr4              90614547  0 -  91010382 C
e cerAty1.NW_012009470v1      313411  0 -  16742782 C
e colAng1.NW_012118799v1      240474  3 -    514179 I
e macNem1.NW_012012389v1      308883  0 -   1764207 C
e macFas5.chr6             181302844  0 - 181584905 C
e rheMac8.chr6             179569005  0 - 180051392 C

a score=43878.000000
s hg38.chr5_KI270793v1_alt    116171 130 +    126136 acggtttacgttagggctcgttcttgatacattattattaattaaggtccacagtttatattagggctcattcttgatac-----------------------------------------------------attattaattaaggtccacggtttacgttagggctcgttcttggtacatt
s panTro5.chr5             181382182 183 - 181907262 gtggtttacgttagggctcgttcttgatacattattattaattgaggtccgcggtttaccttagggctggttcttgatacattattattaattgaggtccgtggtttaccttagggctggttcttgatacattattattaattaagctccgcggtttacgttagggcttgttcttgatacatt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183100877 182 - 183735486 gtggtttacgttagggctcgttcttgatacattattattaattgaggtccgcggtttaccttagggctggttcttGATACATTATTATTAATTGAGGTCCGC-GTTTACCTTAGGGCTGGTTCttgatacattattattaattaaggtccgcggtttacgttagggcttgttcttgatacatt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195100  83 +    698298 acagtttacattagggctcattcttgatacattattattaattgaggtccgcggtttacc----------------------------------------------------------------------------------------------------ttagggctGGTTCttggtacatt
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25468206  40 -  25620257 I
e otoGar3.GL873745           1916334 386 -   2165740 I
e cebCap1.NW_016108158v1      140724 1051 +    298490 I
e saiBol1.JH378155          16053746   0 +  16417988 C
e calJac3.chr2             203900207 396 + 204313951 I
e nomLeu3.chr6             120612307   0 - 121039945 C
e manLeu1.NW_012110441v1      210981   0 -    438239 C
e chlSab2.chr4              90614547   0 -  91010382 C
e cerAty1.NW_012009470v1      313411   0 -  16742782 C
e colAng1.NW_012118799v1      240474   3 -    514179 I
e macNem1.NW_012012389v1      308883   0 -   1764207 C
e macFas5.chr6             181302844   0 - 181584905 C
e rheMac8.chr6             179569005   0 - 180051392 C

a score=1820.000000
s hg38.chr5_KI270793v1_alt    116301 2 +    126136 at
s panTro5.chr5             181382365 2 - 181907262 at
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183101059 2 - 183735486 at
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195183 2 +    698298 at
i gorGor5.CYUI01015805v1   C 0 C 0
s colAng1.NW_012118799v1      240477 2 -    514179 at
i colAng1.NW_012118799v1   I 3 C 0
e aotNan1.NW_018503740v1    25468206 40 -  25620257 I
e otoGar3.GL873745           1916334 386 -   2165740 I
e cebCap1.NW_016108158v1      140724 1051 +    298490 I
e saiBol1.JH378155          16053746 0 +  16417988 C
e calJac3.chr2             203900207 396 + 204313951 I
e nomLeu3.chr6             120612307 0 - 121039945 C
e manLeu1.NW_012110441v1      210981 0 -    438239 C
e chlSab2.chr4              90614547 0 -  91010382 C
e cerAty1.NW_012009470v1      313411 0 -  16742782 C
e macNem1.NW_012012389v1      308883 0 -   1764207 C
e macFas5.chr6             181302844 0 - 181584905 C
e rheMac8.chr6             179569005 0 - 180051392 C

a score=39441.000000
s hg38.chr5_KI270793v1_alt    116303 31 +    126136 tattaattaaggtccacagtttacattaggt
s panTro5.chr5             181382367 31 - 181907262 tattaattaaggtccacagtttacgttaggg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183101061 31 - 183735486 tattaattaaggtccacggtttacgttaggg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195185 31 +    698298 tattaattaaggtccacagtttacattaggg
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179569005 31 - 180051392 tattaactgaggtccacagtttacattaggg
i rheMac8.chr6             C 0 C 0
s colAng1.NW_012118799v1      240479 31 -    514179 tattaattgaggtccacagtttacattaggg
i colAng1.NW_012118799v1   C 0 C 0
e aotNan1.NW_018503740v1    25468206 40 -  25620257 I
e otoGar3.GL873745           1916334 386 -   2165740 I
e cebCap1.NW_016108158v1      140724 1051 +    298490 I
e saiBol1.JH378155          16053746  0 +  16417988 C
e calJac3.chr2             203900207 396 + 204313951 I
e nomLeu3.chr6             120612307  0 - 121039945 C
e manLeu1.NW_012110441v1      210981  0 -    438239 C
e chlSab2.chr4              90614547  0 -  91010382 C
e cerAty1.NW_012009470v1      313411  0 -  16742782 C
e macNem1.NW_012012389v1      308883  0 -   1764207 C
e macFas5.chr6             181302844  0 - 181584905 C

a score=333074.000000
s hg38.chr5_KI270793v1_alt    116334 52 +    126136 ctcattcttggtgttacacttctgtgagtttggacatgggtacaacgacatg
s panTro5.chr5             181382398 52 - 181907262 ctcgttcttggtattacacttctgtgagtttggacatgggtacaacgacatg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183101092 52 - 183735486 ctcgttcttggtattacacttctgtgagtttggacatgggtacaacgacatg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195216 52 +    698298 ctcgttcttggtgttacacttctatgagtttggacatgggtacaacgacatg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120612307 52 - 121039945 ctcattcttggtgttgcacttctgtgggtttggacacgggtacaacgacatg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179569036 52 - 180051392 ctcattcttggtgttgcacttctgtgggtttggacacgggtacaatgacatg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181302844 52 - 181584905 ctcattcttggtgttgcacttctgtgggtttggacacgggtacaatgacatg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      308883 52 -   1764207 ctcattcttggtgttgcacttctgtgggtttggacacgggtacaatgacatg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      313411 52 -  16742782 ctcattcttggtgttgcacatctgtgggtttggacacgggtacaatgacatg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90614547 52 -  91010382 ctcattcttggtgttgcacttctgtgggtttggacacgggtacaatgacatg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      210981 52 -    438239 ctcattcttggtgttgcacatctgtgggtttggacacgggtacaatgacatg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      240510 52 -    514179 ctcattcttggtgttgcacttctgcgggtttggacacgggtacaatgacatg
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16053746 52 +  16417988 ctcattcttgctgttgtatttctgtgggtttggacaggcattccgtgacgtg
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25468206 40 -  25620257 I
e otoGar3.GL873745           1916334 386 -   2165740 I
e cebCap1.NW_016108158v1      140724 1051 +    298490 I
e calJac3.chr2             203900207 396 + 204313951 I

a score=1546262.000000
s hg38.chr5_KI270793v1_alt    116386 234 +    126136 gatccagcattacagtctcatccagaggagcttcactgccctaaaaatcttctgtgctctgcctgttcatccctctctccccctaacccgtggcaaccactgatctttctactgtctccatagttgtgccttttccagaatgtcgtgtagttagaaacctatagcgtgcagccttctcaaagcggcttctttcacttagtcattgcatctgtgtttcctccg-tgtctattcatg
s panTro5.chr5             181382450 234 - 181907262 gatccagcattacagtctcatccagaggagcttcactgccctaaaaatcctctgtgctctgcctgttcatccctctctccccctaacccgtggcaaccactgatctttctactgtctccatagttgtgccttttccagaatgtcgtgtagttagaaacctatagtgtgcagccttctcaaagcggcttctttcacttattcattgcatctgtgtttcctccg-tgtctattcatg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183101144 234 - 183735486 gatccagcattacagtctcatccagaggagcttcactgccctaaaaatcctctgtgctctgcctgttcatccctctatccccctaacccgtggcaaccactgatctttctactgtctccatagttgtgccttttccagaatgtcgtgtagttagaaacctatagcgtgcagccttctcaaagcggcttctttcacttattcattgcatctgtgtttcctccg-tgtctattcatg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195268 233 +    698298 gatccagcattacagtctcatccagaggagcttcactgccctaaaaatcctctgtgctctgcctgttcatccctctctccccctaacccgtggcaaccactgatctttctactgtctccatagttgtgccttttccagaatgtcatgtagttagaaacctatagcgtgcagccttctc-aagcggcttctttcacttattcattgcatctgtgtttcctccg-tgtctattcatg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120612359 235 - 121039945 gatccagcattacagtctcatccagaggagcttcactgccctaaaaatcctccgtgctctgcctgttcatccctctctccccctgacccgtggcgaccactgatctttctaccgtctgcatagttgttccttttccagcatgtcatgtagttagaaaactagagcgtgcaggcttctcaaagcggcttctttcacttattgattgcatccgtgtttcctccgttatctattcatg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179569088 220 - 180051392 gatccagcattacagtctcatccaga-gaacttcacgaccctaaaaatcctctgtgctctgcctgttcatccctctctccccc-aacccgtggcaactact------------gtctccatagttgtgccttttccagaatgtcatgtagttggaaacctatagcgtgcagccttctgaaagcggcttcttttacttattcattgcatctgtgtttcctccg-tatctgttcatg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181302896 220 - 181584905 gatccagcattacagtctcatccaga-gaacttcacggccctaaaaatcctctgtgctctgcctgttcatccctctctccccc-aacccgtggcaaccact------------gtctccatagttgtgccttttccagaatgtcatgtagtttgaaacctatagcgtgcagccttctgaaagcggcttattttacttattcattgcatctgtgtttcctccg-tatctgttcatg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      308935 220 -   1764207 gatccagcattacagtctcatccaga-gaacttcacggccctaaaaatcctctgtgctctgcctgttcatccctctctccccc-aacccgtggcaaccact------------gtctccatagttgtgccttttccagaatgtcatgtagttggaaacctatagcgtgcagccttctgaaagcggcttcttttacttattcattgcatctgtgtttcctccg-tatctgttcatg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      313463 220 -  16742782 gatccggcattacagtctcatccaga-gaacttcacggccctaaaaatcctctgtgctctgcctgttcatccctctctcctcc-aacccgtggcaaccact------------gtctccatagttgtgccttttccagaatgtcatgtagttggaaacctatagcgtgcagccttctgaaagcggcttcttttacttattcattgcatctgtgtttcctccg-tatctgttcatg
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90614599 221 -  91010382 gatccagcattacagtctcatccaga-gaacttcatggccctaaaaatcctctgtgctctgcctgttcatccctctctccccctaacccgtggcaaccact------------gtctccatagttgtgccttttccagaatgtcatgtagttggaaacctatagcgtgcagccttctcaaagcggcttcttttacttattcattgcatctgtgtttcctccg-tatctgttcatg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      211033 220 -    438239 gatccggcattacagtctcatccaga-gaacttcacggccctaaaaatcctctgtgctctgcctgttcatccctctctcctcc-aacccgtggcaaccact------------gtctccatagttgtgccttttccagaatgtcatgtagttggaaacctatagcatgcagccttctgaaagcggcttcttttacttattcattgcatctgtgtttcctccg-tatctgttcatg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      240562 221 -    514179 gatccagcattacagtctcatccaga-gaactccacggccctaaaaatccgctgtgctctgcctgttcatccctctctccccctaacccgtggcaaccact------------gtctccatagttgtgccttttccacaatgtcatgtagttggaaacctagagcgtgcagccttctcagagcggcttcttttacttattcattgcatctgtgtttcctccg-tatctgttcatg
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16053798 222 +  16417988 -atccagcatcacagtctcatccagaggtgcgt--ctgccctggaaacccactgtgc---------tcatccctcccttccgacaatccctggcaaccactgattgttctactgtctccatagttttgtctttcccaggacatcatgtagttagcaacctaccgcgtgcaaccttctcagagcagctccttttacttactcatcgcctctgtgtttcctccg-tatccactcacg
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25468246 224 -  25620257 gatccagcatcacagtctcatccagaggcgcgtcactgccctagaaacccaccgtgc---------tcatccctcccttccatcaatccctggcaaccactgatctttctactgtctccatagctttgcccttcccagaacaccatgcagttagaaccctaccg-gtgcaaccttctcaaagcagctccttttacttcctcgtcgcctctgtgtttcctcca-tatccactcagg
i aotNan1.NW_018503740v1   I 40 C 0
e otoGar3.GL873745           1916334 386 -   2165740 I
e cebCap1.NW_016108158v1      140724 1051 +    298490 I
e calJac3.chr2             203900207 396 + 204313951 I

a score=434048.000000
s hg38.chr5_KI270793v1_alt    116620 49 +    126136 gcttgacagctcatttctttttagcactgaatgatattccactgtctgg
s panTro5.chr5             181382684 49 - 181907262 gcttgacagctcatttcttcttagcactgaatgatattccactgtctgg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183101378 49 - 183735486 gcttgacagctcatttcttcttagcactgaatgatattccactgtctgg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195501 49 +    698298 gcttgacagctcatttctttttagcactgaatgatattccactgtctgg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120612594 49 - 121039945 gcttgacagctcatttctttttagcactgaatgatattccactgtctgg
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179569308 49 - 180051392 gcttgacagctcatttcttcttagcactgaatgagattccactgtctgg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181303116 49 - 181584905 gcttgacagctcatttcttcttagcactgaatgagattccactgtctgg
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      309155 49 -   1764207 gcttgacagctcatttcttcttagcactgaatgagattccactgtctgg
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      313683 49 -  16742782 gcttgacagctcatttcttcttagcactgaatgagattccactgtctgt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90614820 49 -  91010382 acttgacagctcatttcttcttagcactgaatgagattccactgtctgg
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      211253 49 -    438239 gcttgacagctcatttcttcttagcactgaatgagattccactgtctgg
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      240783 49 -    514179 gcttgacagctcatttcttcttagcactgaatgagattccactgtctgg
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203900603 49 + 204313951 gcctggcACctcacttctttttagcactgaatgatattcccctgcctgg
i calJac3.chr2             I 396 C 0
s saiBol1.JH378155          16054020 49 +  16417988 gcttgacacctcacttctttttagcactgaatgatgttccactgcctgg
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25468470 49 -  25620257 gcttgacacctcacttcattttagcactgaatgatattccactgcctgc
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1916334 386 -   2165740 I
e cebCap1.NW_016108158v1      140724 1051 +    298490 I

a score=3610306.000000
s hg38.chr5_KI270793v1_alt    116669 436 +    126136 atctatcca-tctactgaaggacatctcagctgcttccaggtgattttggtgattatgaataaagctgctataaacctccatgtgcaggcttttgtgtagacggaggatttcaactcctgcgggc------ctgaccgttgagttttctggtcat------ggcc-tgcttaggtttgtaggaaactgccacgctgtcttccaagtggccgcg---ccaccctgtgcctccagcagtgctgggtgc---acactcctgtgg--ccacatcctcgccagccttcggtgctatccgtgtcctgggtttcggccacgctgacgggtacgtggtggtgtctccgtgt-g-ttttaatttgcagctccgc---catgacatgggctgtcgtgcata-tttcaggggcttacttgccatctgcctgtctttggtgtggggtctgcccagatgtttggctcatttctcact
s panTro5.chr5             181382733 436 - 181907262 atctatcca-tctactgaaggacatctcagctgcttccaggtgattttggtgattatgaataaagctgctataaacctccatgtgcaggcttttgtgtggatggaggatttcaactcctgtgggc------ctgaccgttgagttgtctggtcat------ggcc-tacttaggtttgtaggaaactgccacgctgtcttccaagtggccgca---ccaccctgtgcctccagcagtgctgggtgc---acactcccgtgg--ccacatcctcgccagccttcggtgctatccatgtcctgggtttcggccatgctgacgggtacgtggtggtgtctccgtgt-g-ttttaatttgcagctccgc---catgacatgggctgtcgtgcata-tttcaggggcttacttgccatctgcctgtctttggtgtggggtctgcccagatgtttggctcatttctcact
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183101427 436 - 183735486 atctatcca-tctactgaaggacatctcagctgcttccaggtgattttggtgattatgaataaagctgctataaacctccatgtgcaggtttttgtgtggatggaggatttcaactcctgtgggc------ctgaccgttgagttgtctggtcat------ggcc-tgcttaggtttgtaggaaactgccacgctgtcttccaagtggccgca---ccaccctgtgcctccagcagtgctgggtgc---acactcccgtgg--ccacatcctcgccagccttcggtgctatccatgtcctgggtttcggccacgctgacgggtacgtggtggtgtctccgtgt-g-ttttaatttgcagctccgc---catgacatgggctgtcgtgcata-tttcaggggcttacttgccatctgcctgtctttggtgtggggtctgcccagatgtttggctcatttctcact
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195550 435 +    698298 atctatcca-tctactgaaggacatctcagctgcttccaggtgattttggtgattatgaataaagctgctataaacctccatgtgcaggcttttgtgtggatggaggatttcaactcctgcgggc------ctgaccgttgagttgtctggtcat------ggcc-tgcttaggtttgaaggaaactgccacgctgtcttccaagtggccgca---ccaccctgtgcctccagcagtgctgggtgc---acactcctgtgg--ccacatcctcgccagccttcggtgctatccgtgtcctgggttttggccacgctaacgggtacgtggtggtgtctccgtgt-gtttttaatttgcagctctgc---catgacatgggctgtcgtgcata-tttcaggggcttacttgccatctgcctgtctttggtgtggggtctgcccagatgtttggctcatt--tcact
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120612643 433 - 121039945 atccatcca-cctactgaaggacatctcagttgcttccaggtgtttttggtgattatgaataaagctgctataaacctccatgtgcaggcttttgtgtggacggaggacttcaactcctgtgggc------ctggccgttgagttgtctggtcat------ggcc-tgcttaggcttgtaggaaactgccacgctgtcttccaagtggctgca---ccaccctgt-cctccagcagtgccgagtgc---acactcctgcggccccacatcctcgccagccttcggtgctatccgtgtcctgggtttc-accacgctaac---tgcgtggtggtgtctccgtgt-g-ttttaatttgcagctccgc---catgacatgggctgtcgtgcata-tttcaggggcttatctgccgtctgcctgtctttggtgcggggtctgcgtagatgtttggctcatttctcact
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179569357 429 - 180051392 atccatcca-cctactgaaggacatctcagttgcttccagggttttttggtgattatgaataaagctgctataaacctccatgtgcaggctcttgtgtggacggaggatttcaa-tcctgtgggc------ctgaccattg--------ggtcat------ggcc-tgcttaggtttgtaggaaactgccgtgctttcttccaagtggctgca---ccaccctgtgcccccagcagtgctgagggc---acactcctgtgaccccacatcctcgccggccttcggtgctatccgtgtcctgggtttcagccacgctaacgggggcgtgatggtgtctccgtgt-g-ttttaatttgcggctccac---catgacatgggctgccgtgtgta-tttcaggggcttatctgccgtctgcctgtctttggtgaggggtctgcccagatgtttggctcatttctcagc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181303165 429 - 181584905 atccatcca-cctactgaaggacatctcagtcgcttccagggttttttggtgattatgaataaagctgctataaacctccatgtgcaggctcttgtgtggacagaggatttcaa-tcctgtgggc------ctgaccattg--------ggtcat------ggcc-tgcttaggtttgtaggaaactgccgtgctttcttccaagtggctgca---ccaccctgtgcccccagcagtgctgagggc---acactcctgtgaccccacatcctcgccggccttcggtgctatccgtgtcctgggtttcagccacgctaacgggggcgtgatggtgtctccgtgt-g-ttttaatttgcggctccac---catgacatgggctgccgtgcgta-tttcaggggcttatctgccgtctgcctgtctttggtgaggggtctgcccagatgtttggctcatttctcagc
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      309204 429 -   1764207 atccatcca-cctactgaaggacatctcagtcgcttccagggttttttggtgattatgaataaagctgctataaacctccatgtgcaggctcttgtgtggacggaggatttcaa-tcctgtgggc------ctgaccattg--------ggtcat------ggcc-tgcttaggtttgtaggaaactgccgtgctttcttccaagtggctgca---ccaccctgtgcccccagcagtgctgagggc---acactcctgtgaccccacatcctcgccggccttcggtgctatccatgtcctgggtttcagccacgctaacgggggcgtgatggtgtctccgtgt-g-ttttaatttgcggctccac---catgacatgggctgccgtgcgta-tttcaggggcttatctgccgtctgcctgtctttggtgaggggtctgcccagatgtttggctcatttctcagc
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      313732 437 -  16742782 atccatcca-cctactgaaggacatctcggtcgcttctagggttttttggtgattatgaataaagctgctatgaacttccatgtgcaggctcttgtgtggacggaggatttcaa-tcctgtgggc------ctgaccattgggttgtgtggtcat------ggcc-tgcttaggtttgtaggaaactgccgtgctttcttccaagtggctgca---ccaccctgtgcccccagcggtgctgagggc---acactcctgtgaccccacatcctcgccggccttcggtgctatccgtgtcctgggtttcagccatgctaacgggggcgtgatggcgtctccgtgt-g-ttttaatttgcggctccac---catgacatgggctgccatgcgta-tttcaggggcttatctgctgtctgcctgtctttggtgaggggtctgcccagatgtttggctcatttctcagc
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90614869 436 -  91010382 atccatcca-tctactgaaggacatctcagtcgcttccagggttttttggtgattatgaataaagctgctataaacctccatgtgcaggctcttgtgtggacagaggatttcaa-tcctgtgggc------ctgaccgttgggttgtgtggtcat------ggcc-tgcttaggtttgtaggaaactgccgtgctgtcttccaagtggctgca---ccaccctgtg-ccccagcagtgctgagggc---gcactcctgtgaccccacatcctctccggccttcggtgctatccgtgtcctgggtttcagccacgctaacgggggcgtgacggtgtctccgtgt-g-ttttaatttgcagctccac---catgacatgggcggctgtgcgta-tttcaggggcttatctgccgtctccctgtctttggtgaggggtctgcccagatgtttggctcatttctcagc
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      211302 437 -    438239 atccatcca-cctactgaaggacatctcagtcgcttctagggttttttggtgattatgaataaagctgctataaacctccatgtgcaggctcttgtgtggatggaggatttcaa-tcctgtgggc------ctgaccattgggttgtgtggtcat------ggcc-tgcttaggtttgtaggaaactgccgtgctttcttccaagtggctgca---ccaccctgtgcccccagcagtgctgagggc---acactcctgtgaccccacatcctcgccggccttcggtgctatccgtgtcctgggtttcagccacgctaacgggggtgtgatggtgtctccgtgt-g-ttttaatttgcagctccac---catgacatgggctgccgtgcgta-tttcaggggcttatctgccgtctgcctgtctttggtgaggggtctgcccagatgtttggctcatttctcagc
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      240832 437 -    514179 atccatcca-tctactgaagcacatctcagttgcttccagggttttttggtgattatgaataaagctgctataaacctccatgtgcaggctcttgtgtggacggaggatttcaa-tcctgtgggc------ctgaccgttgggttgtatggtcgt------ggcc-tgcttaggtttgtaagaaactgccatgctgtcttccaagtggctgca---ccaccctgtgcccccggcagtgccgagggc---acactcctgtgaccccacatcctcgccggccttcggtgctatccgtgtcctgggttccagccacgctacggggagcatgatggtgtctctgtgt-g-ttttaatttgcagctccac---catgacatgggctgccgtgcgta-tttcaggggcttatctgccatctgcctgtctttggtgaggggtcggcccggatgtttggctcatttttcagt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203900652 438 + 204313951 acccattca-cctactaaaggacatctcagttgcttccagcttttcttggtgatgatgaataacgctgctataaacatccatgtggggggttttgtgtggacgtaagatttcaactcctgtgggc------ctgaccattaggtggtatggtcat------ggca-tgcttaggttcctaagaaaatgccacgtggccttccaggtggctgcgttcccactgtgtgcccccaccagagctctgtgt---gtgctcccctgaccccacatccttgccagcattcggtgcgctctgtgtcctgggtttcagccacgctagcgggtgtatggaggtgtctctgtgt-g-ttttaatttgcagttccacagacgtgacatgggctgtcctgtgta-tttcagcaccttatttactat----ctgtc--tggtgagggctctgcccagatgtttggctcatttttcgtc
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16054069 437 +  16417988 acccattca-cctactgaaggacatctcagttgcttccagctttttttggtgatgatgaataaagctgctataaacatccatgtgggggattttgtgtggatgtaagatttcaactcctgtgggc------ctgaccgttaggtggtagggtcat------ggca-tgcttacgtttgtaggaaactgccacgtggccttccaggtggctgcattcccactgtgtgcccccaccagagctcaatgt---gcactcctgtgaccccacatcctcgccagcatttggtgctatctgtgtcctgggtttcagccaggctagcgggtgcacggaggtgcctccatgt-g-ttttaatttgcacttccac---catgacatgggctgtcgtgcgta-tttcaggggcttattgactat----ctgtctttggtgaggggtctgcccagatgtttggctcatttttcatt
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25468519 418 -  25620257 acccattca-cctactgaaggacatctcagt-------------------tgatgatgaataaagctgctataaacatccacgtgggggttttagtgtggacgtaagatttcaactcctgtgggc------ttgaccgttaggtggtatggtcat------ggca-tgcttaggtttgtaggaaactgccacgtggccttccagttggctgcattcccactgtgtgcccccaccagagctcagtgt---gcgctcctgtgaccccacatcgtcgccagcatccggtgccatctgtgtcctgggtttcagccacgctggcgggtgcgtggagatgtccccgtgt-g-tttcaattagcagttccac---catgacatgggctggcgtgcaga-ttgcaggggcttatttaccat----ctgtcttcggtgaggggtctgccccgatgtttggctcatttttcact
i aotNan1.NW_018503740v1   C 0 C 0
s otoGar3.GL873745           1916720 446 -   2165740 atttctccattctgctaaaaaacatcttggctgtgtcca---catcttggtaattatggataaagctgctataaagatctatgtgcagg-ttttgtgtgaacaggagacttcaactcatttgggtaaatagcaggcagtaagactgccagatcacataagaggctgtgcttggtttggtgagaagccacca-gttgccctcctcatggctgca---cctctcttt---cctagcaccagtgggtgcttggagctcggggggctaagtgctctcactagcacctggtgcgaccagtgtcctggattctggccaagctaatgggtatgtggtagcatcttaatgtca-cctttgctcaagtttccct---gatgacatatgacggggagcatattttcatgtgcttatttttcatctgc--atctttggtgaggtgtctgtttagatatgttgtccatttc-catt
i otoGar3.GL873745         I 386 C 0
e cebCap1.NW_016108158v1      140724 1051 +    298490 I

a score=5772079.000000
s hg38.chr5_KI270793v1_alt    117105 583 +    126136  
s panTro5.chr5             181383169 582 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183101863 582 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      195985 582 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120613076 584 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179569786 584 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181303594 584 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      309633 584 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      314169 583 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90615305 578 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      211739 583 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      241269 585 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203901090 585 + 204313951  
i calJac3.chr2             C 0 I 48
s saiBol1.JH378155          16054506 572 +  16417988  
i saiBol1.JH378155         C 0 I 113
s cebCap1.NW_016108158v1      141775 576 +    298490  
i cebCap1.NW_016108158v1   I 1051 I 109
s aotNan1.NW_018503740v1    25468937 589 -  25620257  
i aotNan1.NW_018503740v1   C 0 I 166
s otoGar3.GL873745           1917166 550 -   2165740  
i otoGar3.GL873745         C 0 C 0

a score=9895.000000
s hg38.chr5_KI270793v1_alt    117688 3 +    126136 C-AG
s panTro5.chr5             181383751 3 - 181907262 T-GG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183102445 3 - 183735486 T-GG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      196567 3 +    698298 T-GG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120613660 4 - 121039945 TGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179570370 3 - 180051392 T-GG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181304178 3 - 181584905 T-GG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      310217 3 -   1764207 T-GG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      314752 3 -  16742782 T-GG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90615883 3 -  91010382 C-AG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      212322 3 -    438239 T-GG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      241854 3 -    514179 T-GG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203901723 3 + 204313951 t-aa
i calJac3.chr2             I 48 I 36
s otoGar3.GL873745           1917716 3 -   2165740 C-AG
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25469526 166 -  25620257 I
e cebCap1.NW_016108158v1      142351 109 +    298490 I
e saiBol1.JH378155          16055078 113 +  16417988 I

a score=414474.000000
s hg38.chr5_KI270793v1_alt    117691 43 +    126136 GAG-----------------GTCTTGGAGCACAGCAGTGCCTAGAG---AAAGCTGCGTGTGC
s panTro5.chr5             181383754 43 - 181907262 GAG-----------------GTCTCGGAGCACAGCAGTGCCCAGAG---AAAGCTGCGTGTGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183102448 43 - 183735486 GAG-----------------GTCTCGGAGCACAGCAGTGCCCAGAG---AAAGCTGCGTGTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      196570 43 +    698298 GAG-----------------GTCTCGGAGCACAGCAGTGCCCAGAG---AAAGCTGCGTGTGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120613664 46 - 121039945 GGG-----------------GTCTCGGAGCACAGCAGTGCCCAGAGAAAAAAGCTGCGTGTGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179570373 43 - 180051392 GAG-----------------GTCTCAGAGCACAGCAGTGCCCAGAG---AAAGCTGTGTGTGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181304181 43 - 181584905 GAG-----------------GTCTCAGAGCACAGCAGTGCCCAGAG---AAAGCTGCGTGTGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      310220 43 -   1764207 GAG-----------------GTCTCAGAGCACAGCAGTGCCCAGAG---AAAGCTGCGTGTGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      314755 43 -  16742782 GAG-----------------GTCTCGGAGCACAGCAGTGCCCAGAG---AAAGCTGCGTGTGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90615886 43 -  91010382 GAG-----------------GTCTCGGAGCACAGCAGTGCCCAGAG---AAAGCTGCGTGTGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      212325 43 -    438239 GAG-----------------GTCTCGGAGCACAGCAGTGCCCAGAG---AAAGCTGCGTGTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      241857 43 -    514179 GAG-----------------GTCTCGGAGCACAGCAGTGCCCAGAG---AAAGCTGTGTGTGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203901762 60 + 204313951 gagaaacatgtttctcacatgtcttGGAGCATGGTAGAGCCCAGAG---AAAGCCGCTTGTGC
i calJac3.chr2             I 36 I 1
s saiBol1.JH378155          16055191 43 +  16417988 GAG-----------------GTCTTGGAGCGTGGTAGAGCCCAGAG---AAAGCTGCGTGTGC
i saiBol1.JH378155         I 113 I 3
s cebCap1.NW_016108158v1      142460 43 +    298490 GAG-----------------GTCTTGGAGCATGGTAGAGCCCAGAG---AAAGCTGTGTGTGC
i cebCap1.NW_016108158v1   I 109 I 24
s otoGar3.GL873745           1917719 43 -   2165740 GAG-----------------GTCTCGGACCATAGTGGTACCCAGAG---GAAGCTGTGTGTGC
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25469526 166 -  25620257 I

a score=165629.000000
s hg38.chr5_KI270793v1_alt    117734 30 +    126136 TGCTGGTGCATCTTCCCGCCCACCCCTGCA
s panTro5.chr5             181383797 30 - 181907262 TGCTGGTGCATCTTCCCGCCCACCCCTGCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183102491 30 - 183735486 TGCTGGTGCATCTTCCCGCCCACCCCTGCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      196613 30 +    698298 TGCTGGTGCATCTTCCCGCCCACCCCTGCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120613710 30 - 121039945 TGCTGGTGCGTCTTCCCACCCACCCCTGCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179570416 30 - 180051392 TGCTGGCGCGTCTTCCCACGCACCCCTGCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181304224 30 - 181584905 TGCTGGCGCGTCTTCCCACGCACCCCTGCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      310263 30 -   1764207 TGCTGGCGCGTCTTCCCACGCACCCCTGCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      314798 30 -  16742782 TGCTGGCGCATCTTCCCACCCACCCCTGCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90615929 30 -  91010382 TGCTGGCGCGTCTTCCCACCCACCCCTGCA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      212368 30 -    438239 TGCTGGCGCGTCTTCTCACCCACCCCTGCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      241900 30 -    514179 TGCTGGCGCGTCTTCCCACCCACCCCTGCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203901823 11 + 204313951 ----------TCTTCCCGGCC---------
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16055237 21 +  16417988 TCCCGGTGCGTCTTCCCAGCG---------
i saiBol1.JH378155         I 3 C 0
s otoGar3.GL873745           1917762 24 -   2165740 -TCAGATAAGCCCTCCTGTCTGTAC-----
i otoGar3.GL873745         C 0 C 0
e aotNan1.NW_018503740v1    25469526 166 -  25620257 I
e cebCap1.NW_016108158v1      142503 24 +    298490 I

a score=2496412.000000
s hg38.chr5_KI270793v1_alt    117764 277 +    126136 CCCAGCAGCCCTGGCCTTTCCCACAGCTCCTCCACCTCCATTTCCCTCGCCTTCCCC-CCGCAGGATTCC-CCAGGCAGCTGA------CCCCATCGACTCACAGGAGATGGCATCCACGG--CCGCCTGCCTGGGCC-TTT-----CCGGGCTGAGTCTGTTCCAGCCTGTGGGTAGCGGGCCCTCAGCAAATGCCTGAAAATGCACTGGGC--ATG-TTTGCCTG----CCAGG---CAGA-GAGCT---CATGCATCCATGGGCCTCATCT-TTTCCTCTGTTAGCT------TTGTCAGATGAAAAATCA
s panTro5.chr5             181383827 277 - 181907262 CCCTGCAGCCCTGGCCTTTCCCACAGCTCCTCCACCTCCATTTCCCTCGCCTTCCCC-CCGCAGGATTCC-CCAGGCAGCTGA------CCCCATCGACTCACAGGAGATGGCATCCGCGG--CCGCCTGCCTGGGCC-TTT-----CCAGGCTGAGTCTGTTCCAGCCTGTGGGTAGCGGGCCTTCAGCAAATGCCTGAAAATGCACTGGGC--ATG-TTTGCCTG----CCAGG---CAGA-GGGCT---CGTGCATCCATGGGCCTCATCT-TTTCCTCTGTTAGCT------TTGTCAGATGAAAAATCA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183102521 277 - 183735486 CCCAGCAGCCCTGGCCTTTCCCACAGCTCCTCCACCTCCATTTCCCTCGCCTTCCCC-CCGCAGGATTCC-CCAGGCAGCTGA------CCCCATCCACTCACAGGAGATGGCATCCGCGG--CCGCCTGCCTGGGCC-TTT-----CCAGGCTGAGTCTGTTCCAGCCTGTGGGTAGCGGGCCTTCAGCAAATGCCTGAAAATGCACTGGGC--ATG-TTTGCCTG----CCAGG---CAGA-GGGCT---CGTGCATCCATGGGCCTCATCT-TTTCCTCTGTTAGCT------TTGTCAGATGAAAAATCA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      196643 278 +    698298 CCCAGCAGCCCTGGCCTTT-CCACAGCTCCTCCACCTCCATTTCCCTCGCCTT-CCC-CCGCAGGATTCC-CCAGGCAGCTGA------CCCCATCGACTCACAGGAGATGGCATCCACGGGCCCGCCTGCCTGGGCCTTTT-----CCGGGCTGAGTCTGTTCCAGCCTGTGGGTAGCGGGCCCTCAGCAAATGCCTGAAAATGCACTGGGC--ATG-TTTGCCTG----CCAGG---CAGA-GAGCT---CATGCAACCATGGGCCTCATCT-TTTCCTCTGTTAGCT------TTGTCAGATGAAAAATCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120613740 277 - 121039945 CCCAGCAGCCCTGGGCTTTCCCACAGCTCCTCCACCTCCATTTCCCTTGCCTTCCCC-CCACAGGATTCC-CCAGGCAGCTGA------CCCCATCGACTCACAGGAGATGGCATCCACGG--CCGCCTGCCTGGGCC-TTT-----CCAGGCTGAGTCTGTTCCAGCCCGTGGGTAGCAGGCCCTCAGCAAATGCCTGAAAATGCACTGGGC--GTG-TTCGCCTGTGATCCCAG---CACATTGGGA---CATACGGCC----GCCTCAACT-TTTCGTCTG-GAATT------TTGACCAATGAAAAATCA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179570446 276 - 180051392 CCCAGCAGCCCTGGCCTTTCCCACGGCTCCTTCACCTCCGTTTCCCTTGCCTTCCCC-CCGTAGGATTCC-CCAGGCAGCTGA------ACCCATTGACTCACAGAAGATGGCACCCACGG--ACGCCTGCCTGGGCC-TTT-----CCCGGCTGAGTCTGTT-CAGCCCGTGGGTAGCGGGCCCTCAGCAAATACCTGAAAATGCACTGGGC--ATG-TTCCCCTG----CCAGG---CAGA-GAGCT---CATGCATCCATGGGCCTCATCT-TTTCCTCGGTTAGCT------TTGTCAGATGAAAAATCA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181304254 276 - 181584905 CCCAGCAGCCCTGGCCTTTCCCACGGCTCCTTCACCTCCGTTTCCCTTGCCTTCCCC-CCGTAGGATTCC-CCAGGCAGCTGA------ACCCATTGACTCACAGAAGATGGCACCCACGG--ACGCCTGCCTGGGCC-TTT-----CCCGGCTGAGTCTGTT-CAGCCCGTGGGTAGCGGGCCCTCAGCAAATACCTGAAAATGCACTGGGC--ATG-TTCCCCTG----CCAGG---CAGA-GAGCT---CATGCATCCATGGGCCTCATCT-TTTCCTCGGTTAGCT------TTGTCAGATGAAAAATCA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      310293 276 -   1764207 CCCAGCAGCCCTGGCCTTTCCCACAGCTCCTTCACCTCCGTTTCCCTTGCCTTCCCC-CCGTAGGATTCC-CCAGGCAGCTGA------ACCCATTGACTCACAGAAGATGGCACCCACGG--ACGCCTGCCTGGGCC-TTT-----CCCGGCTGAGTCTGTT-CAGCCCGTGGGTAGCGGGCCCTCAGCAAATACCTGAAAATGCACTGGGC--ATG-TTCCCCTG----CCAGG---CAGA-GAGCT---CATGCATCCATGGGCCTCATCT-TTTCCTCGGTTAGCT------TTGTCAGATGAAAAATCA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      314828 276 -  16742782 CCCAGCAGCCCTGGCCTTTCCCACGGATCCTTCACCTCCGTTTCCCTTGCCTTCCCC-CCGTAGGATTCC-CCAGGCAGCTGA------ACCCATTGACTCACAGAAGATGGCACCCACGG--ACGCCTGCCTGGGCC-TTT-----CCCGGCTGAGTCTGTT-CAGCCCATGAGTAGCGGGCCCTCAGCAAATACCTGAAAATGCACTGGGC--ATG-TTCCCCTG----CCAGG---CAGA-GAGCT---CATGCATCCATGGGCCTCATCT-TTTCCTTGGTTAGCT------TTGTCAGATGAAAAATCA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90615959 276 -  91010382 CCCAGCAGCCCTGGCCTTTCCCACGGCTCCTTCACCTCCGTTTCCCTTGCCTTCCCC-CCGTAGGATTCC-CCAGGCAGCTGA------ACCCATTGACTCACAGAAGATAGCACCCACGG--ACGCCTGCCTGGGCC-TTT-----CCGGGCTGCGTCTGTT-CAGCCCGTGGGTAGCGGGCCCTCAGCAAATACCTGAAAATGCACTGGGC--ATG-TTCGCCTG----CCAGG---CAGA-GAGCT---CATGCATCCATGGGCCTCATCT-TTTCCTCGGTTAGCT------TTGTCAGAGGAAAAATCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      212398 276 -    438239 CCCAGCAGCCCTGGCCTTTCCCACGGCTCCTTCACCTCCGTTTCCCTTGCCTTCCCC-CCGTAGGAGTCC-CTAGGCAGCTGA------ACCCATTGACTCACAGAAGATGGCACCCACGG--ACGCCTGCCTGGGCC-TTT-----CCCAGCTGAGTCTGTT-CAGCCCGTGGGTAGCGGGCCCTCAACAAATACCTGAAAATGCACTGGGC--ATG-TTCCCCTG----CCAGG---CAGA-GAGCT---CATGCATCCATGGGCCTCATCT-TTTCCTCGGTTAGCT------TTGTCAGATGAAAAATCA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      241930 276 -    514179 CCCAGCAGCCCTGGCCTTTCCCACGGCTCCTTCACCTCCATTTCCCTTGCCTTCCCC-CCGTAGGATTCC-CCAGGCAGCTGA------ACCCATTGACTCACAGAAGATGGTACCCATGG--ACGCCTGCCTGGGCC-TTT-----CCAGGCTGAGTCTGTT-CAGCCCGTGGGTAGTGGGCCCTCAGCAAATACCTGAAAATGCACTGGGC--ATG-TTCGCCTG----CCAGG---CAGA-GAGCT---CAGGCATCCATGGGCCTCATCT-TTTCCTTGGTCAGCT------TTGTCAGATGAAAAATCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203901834 284 + 204313951 CACAGCCGCCCTGGCCTTTCCCCAGG---CTCCGCTTCCGTCTCCCTTGCCTTCCCTACTGCAGGATCCC-CCAGGCAGGCCACCCCAGACCCATCAACTCACAGAAAATGGCACCCACGG--CTGCCTGCCTGGGCC-CTT-----CTGGGCTGAGTCTGTTCTGGCCAGTGGGTATGGGGCCCTCAGCAAATGCCTGACAATGCAGTGGAC--GTG-TTTGCCTG----CCAGG---CGGA-GAGCTTCTCCTGCCTTCACAGGCCTCATCA-TTTCCTCTGTTAGCT------TTGTCAGATGAAGAACCA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16055258 287 +  16417988 CCCGGCCGCCCTGGCCTTTCCCCAGGCTCCTCCGCCTCCGTCTCCCTTGCTTTCCCCACTGTAGGATCCC-CCAGGCAGCCGACCCCAGACCCATCGACTCACAGAAAATGGCACCCCTGG--CTGCCTGCCTGGGCC-TTT-----ACGGGCTGAGTCTGTTCTGGCCCGTGGGTATCGAGCCTTCAGCAAATGCCTGAAAATGCAGTGGAT--GTG-TTCGCCTG----CCCGG---TGGA-GAGCTTCCCCTGTGTTCATAGCCCTCATCA-TTTCCTCTGTTAGCT------TTGTCGGATGAAGAATCA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      142527 292 +    298490 CCCAGCCGCCCTGGGCTTTCCCTGGGCTCCTCCGCCTCTGTCTCCCTTGCCTTCCCTACTGCAGGATCCC-CCAGGCAGTTGACCCCAGACCCATCGACTCACAGAAAATGGCACCCACGG--CTGCCTGCCTGGGCC-TTTTCGGGTCGGGCTGAGTCTGTTCTGGCCTGTGGGTATCAGGCCCTCAGCAAATGCGTGAAAATGCAGTGAAT--GTG-TTCGCCTG----CCAGG---TGGA-GAGCTTCTCCTGCGTTCACAGGCCTCATCA-TTTCCTCTGTTAGCT------TTGTCAGATGAAGAATCA
i cebCap1.NW_016108158v1   I 24 C 0
s aotNan1.NW_018503740v1    25469692 287 -  25620257 CCCAGCCGCCCTGGCCTTTCCCCGGGCTCCTCCACCTCCGTGTCCCTAGCCTTCCCTACTGCAGGATCCC-CCAGGCAGCCGACCTCAGACCCATCAACTCACAGAAAATGGCACCTACGG--CTGCCTGCCTGGGTC-TTT-----TCGGGCTGAGTCTGTCCCAGCCTGTGGGTATCGTGCCCTCAGCAAATGCCTGAAAATGCAGCGGAC--GTG-TTCGCCTG----CCAGG---CGGA-GAGCTTTTCCTGCGTTCACAGGCCTCATCA-TTTCCTCTGTTAGCT------TTGTCAGATGAAGAATCA
i aotNan1.NW_018503740v1   I 166 C 0
s otoGar3.GL873745           1917786 244 -   2165740 CCCAGCAGCCCCAGCCATCCC--AGTCATCTAGTCTATCATCTCCTAAGCCATTGCT------GGGTCCCGTCAGGGTACTGA------CCC---TGAC-CACAGAAGCCAACACTCACAG--CCTCATGTCT-GACC-AGT-----CCA--------------CAG---------------------GCAAAGACCTGGGAATGCCATGTGCTACTGTTTTGCCTG----CTGGGCATCAGG-CAGTT---CATGCACTAGCTGGTGACCCCTGTCTCCTCTCCCAGCTGTCAGCTTGCCAAATGGAGAATCA
i otoGar3.GL873745         C 0 I 1178

a score=4268847.000000
s hg38.chr5_KI270793v1_alt    118041 550 +    126136  
s panTro5.chr5             181384104 551 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183102798 551 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      196921 550 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120614017 538 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179570722 524 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181304530 524 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      310569 524 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      315104 546 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90616235 539 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      212674 544 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      242206 534 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203902118 551 + 204313951  
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16055545 557 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      142819 561 +    298490  
i cebCap1.NW_016108158v1   C 0 I 61
s aotNan1.NW_018503740v1    25469979 532 -  25620257  
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I

a score=26520.000000
s hg38.chr5_KI270793v1_alt    118591 3 +    126136 CCC
s panTro5.chr5             181384655 3 - 181907262 CCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183103349 3 - 183735486 CCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      197471 3 +    698298 CCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120614555 3 - 121039945 CCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179571246 3 - 180051392 CCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181305054 3 - 181584905 CCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      311093 3 -   1764207 CCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      315650 3 -  16742782 CCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90616774 3 -  91010382 CCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      213218 3 -    438239 CCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      242740 3 -    514179 CCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203902669 2 + 204313951 -CC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16056102 2 +  16417988 -CC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25470511 2 -  25620257 -CC
i aotNan1.NW_018503740v1   C 0 I 34
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      143380 61 +    298490 I

a score=228572.000000
s hg38.chr5_KI270793v1_alt    118594 39 +    126136 TGGGAAGCCAGCTGAGTGTGGGGCAGTGGAGCGCTGACT
s panTro5.chr5             181384658 39 - 181907262 TGGGAAGCCAGCTGAGTGCGGGGCAGTGGAGCGCTGACT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183103352 39 - 183735486 TGGGAAGCCAGCTGAGTGCGGGGCAGTGGAGCGCTGACT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      197474 39 +    698298 TGGGAAGCCAGCTGAGTGCGGGGCAGTGGAGCGCTGACT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120614558 39 - 121039945 TGGGAAGCCAGCTGAGTGTGGGGCAGTGGAGCGCTGACT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179571249 39 - 180051392 TGGGAAGCCAGCTGAGTGCTGTGCGGCTGAGCGCTGACT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181305057 39 - 181584905 TGGGAAGCCAGCTGAGTGCTGTGCGGCTGAGCGCTGACT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      311096 39 -   1764207 TGGGAAGCCAGCTGAGTGCTGTGCGGCTGAGCGCTGACT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      315653 39 -  16742782 TGGGAAGCCAGCTGAGTGCTGTGCGACTGAGCGCTGACT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90616777 39 -  91010382 TGGGAAGCCAGCTGAGAGCTGTGTGGCTGAGCGCTGACT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      213221 39 -    438239 TGGGAAGCCAGCTGAGTGCTGTGCGACTGAGCACTGACT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      242743 39 -    514179 TGGGAAGCCAGCTGAGTGCTGTGTGGCTGAGCGCTGACT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203902671 34 + 204313951 TGGGAAGGCAGCTGAGTACCGTCCATCTG---GTGGA--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16056104 34 +  16417988 TGGGAAGGCAGCTGAGTGCTGTCCGTCTG---GTGGA--
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25470513 34 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      143380 61 +    298490 I

a score=168014.000000
s hg38.chr5_KI270793v1_alt    118633 26 +    126136 GCAGGAGGGACAACGCCGGCTGCCCG
s panTro5.chr5             181384697 26 - 181907262 GCAGGAGGGACAACGCCGGCTGCCCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183103391 26 - 183735486 GCAGGAGGGACAACGCCGGCTGCCCG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      197513 25 +    698298 GCAGGAGGGACAACG-CGGCTGCCCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120614597 26 - 121039945 GCAGGAGGGACAACGCCGGCTGCCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179571288 26 - 180051392 GCAGGGGGGCCAACGCCAGCTGCCTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181305096 26 - 181584905 GCAGGGGGGCCAACGCCAGCTGCCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      311135 26 -   1764207 GCAGGGGGGCCAACGCCAGCTGCCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      315692 26 -  16742782 GCAGGGGGGCCAACGCCGGCTGCCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90616816 26 -  91010382 GCAGGGGGGTCAACGCCGGCTGCCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      213260 26 -    438239 GCAGGGGGGCCAACGCCGGCTGCCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      242782 26 -    514179 GCAGGAGGGGCAACGCCGGCTGCCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203902705 25 + 204313951 GCAGGACACACCACGCCGGCCGCCC-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16056138 25 +  16417988 GCAGGACACACCACCCTGGCCGCCC-
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25470547 25 -  25620257 GCAGGACACAGCACGCCGGCTGCCC-
i aotNan1.NW_018503740v1   I 34 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      143380 61 +    298490 I

a score=3947619.000000
s hg38.chr5_KI270793v1_alt    118659 469 +    126136 CAGGGCCCCTCTGAGATGCCTTTGCCTTGCTTGATTCGCGCCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGTGCCAGCTTCTTCTGGCATCCATG-------CGAGACACGGAGGCCTTCCTCATTCCTGGTTCTTTGCAGGAGGCCTCCTCCCCCTCCCCGCACCCCATTCTCCTCTCACTCCCTGACATGCTTTGGGGTACAGCTAACTTCACCTGCTGTGCCAGGTCCCTGGCAGTTCACTGAGTCTGGAACCGCAAGCTTGGTTTTGGGAATGGCTGTGGTGATGCCTGTC---CGCGGTTCTCCATCTTCTGCCCACGCCTGAGTTCCAGGGTTCCACGTTCGGCCCACATGGGACCAGCCTACTCTGccctcaaacccttccttcctccctccctccctcccttccttccttctttccctccctccctccctccttccctccctccctccttccttccttccAtc--------
s panTro5.chr5             181384723 465 - 181907262 CAGGGCCCCTCTGAGATGCCTTTGCCTTGCTTGATTCGCGCCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGCGCCAGCTTCTTCTGGCATCCATG-------CGAGACACGGAGGCCTTCCTCATTCCTGGTTCTTTGCAGGAGGccccctccccctccccacaccccattctcctctcactccctGACATGCTTTGGGGTACAGCTAACTTCACCTGCTGTGCCAGGTCCCTGGCAGTTCACTGAGTCTGGAACCGCAAGCTTGGTTTTGGGAATGGCTGTGGTGGTGCCTGTC---CGCGGTTCTCCATCTTCTGCCCACGCCTGAGTTCCAGGGTTCCACGTTCGGCCCACATGGGACCAGCCTACTCTGCCCTCAAACccttccttcctccctccctccctcccttccttccttctt----tccctccctccctccttccctccctccctccttccttccttccAtc--------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183103417 465 - 183735486 CAGGGCCCCTCTGAGATGCCTTTGCCTTGCTTGATTCGCACCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGCGCCAGCTTCTTCTGGCATCCATG-------CGAGACACGGAGGCCTTCCTCATTCCTGGTTCTTTGCAGGAGGccccctccccctccccacaccccattctcctctcactccctGACATGCTTTGGGGTACAGCTAACTTCACCTGCTGTGCCAGGTCCCTGGCAGTTCACTGAGTCTGGAACCGCAAGCTTGGTTTTGGGAATGGCTGTGGTGGTGCCTGTC---CGCGGTTCTCCATCTTCTGCCCACGCCTGAGTTCCAGGGTTCCACGTTCGGCCCACATGGGACCAGCCTACTCTGCCCTCAAACccttccttcctccctccctccctcccttccttccttctt----tccctccctccctccttccctccctccctccttccttccttccAtc--------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      197538 456 +    698298 CAGGGCCCCTCTGAGATGCCTTTGCCTTGCTTGATTTGCACCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGCGCCAGC-TCTTCTGGCATCCATG-------CGAGACACGGAGGCCTTCCTCATTCCT-GTTCTTTGCAGGAGGCCTCCTTCCCCTCCCTGCACCCCATTCTCCTCTCACTCCCTGACATGCTTTGGGGTACAGCTAACTTCACCTGCTATGCCAGGTCCCTGGCAGTTCACTGAGTCTGGAACCGCAAGCTTGGTTTTGGGAATGGCTGTGGTGGTGCCTGTC---CGCGGTTCTCCATCTTCTGCCCACGCCTGAGTTCCAGGGTTCCACGTTCGGCCCACATGGGACCAGCCTACTCTGccctcaaacccttccttcttccctccctccgt-ccttccttccttctt----tccttccctccctcctt-----cctccctccctccctccttccAT---------
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120614623 410 - 121039945 CACGGCCCCTGTGAGATGCCTTTGCCTTGATGGATTCGTGCCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGCGCCAGCTTCTTCCGGCATCCATG-------CGAGACTGGGAGGCCTTCCTCATTCCTGGTTCCTTGCAGGAGGcctcctccccctccccgctccccattctcctctcactccctGACATGCTTTGGGGTACAGCTAACTTCACCTGCTGTGCCAGGTCCCTGGCAGTTCACTGAG--TGGAACTGCAAGCTTGGTTCTGGGAATGGCTGTGGCAGCGCCTGTC---CGTGGTTCTCCATCTTCTGCCCACGCCTGAGTTCCAGGGTTCCACGTTCAGCCCACATGCGACCAGCCTACTCTGccctcaagcccttccttcctccctccctccct---------------------------------------------------------ccttccAtc--------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179571314 453 - 180051392 CACAGCCCCTCTGAGATGCCTTTGCCTTGCTTGATTCACGCCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGCGCCAGCTTCTTCTGGCGTCCATG-------CAAGACTCCGAGGCCTTCCTCGTTCCTGCTGCTTTGCAGGGGGCCTCCTCCCCCTCCCTGCGCCCCATTCTCCTCTCACTCCCTGAAGTGCTTTGGGGTGTAGCTAACTTCACCTGCTGTGCCAGGTCCCTGGCGGGCCACTGAGTCTGGAAACGCAAGCTTGGTTCTGGGAACGGCTGTGGCGGTGCCTGTC---CATGGTTCTCCATCTTCTGCCCACGCCTGAGTTCCAGGGTTCCACATTCAGCCCACATGTGTCCAGCCTACTCTGCCCTCAAGCccttccttcctctctccctccctttctcccttcctccct----tcttttcctccc------------tccttccttccttccttccAtc--------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181305122 453 - 181584905 CACAGCCCCTCTGAGATGCCTTTGCCTTGCTTGATTCACGCCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGCGCCAGCTTCTTCTGGCGTCCATG-------CAAGACTCCGAGGCCTTCCTCGTTCCTGCTGCTTTGCAGGGGGcctcctccccctccccgcgccccattctcctctcactcccTGAAGTGCTTTGGGGTGTAGCTAACTTCACCTGCTGTGCCAGGTCCCTGGCGGGCCACTGAGTCTGGAAACGCAAGCTTGGTTCTGGGAACGGCTGTGGCGGTGCCTGTC---CATGGTTCTCCATCTTCTGCCCACGCCTGAGTTCCAGGGTTCCACATTCAGCCCACATGTGTCCAGCCTACTCTGCCCTCAAGCccttccttcctctctccctcccttcctcccttcctccct----tcttttcctccc------------tccttccttccttccttccAtc--------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      311161 457 -   1764207 CACAGCCCCTCTGAGATGCCTTTGCCTTGCTTGATTCACGCCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGCGCCAGCTTCTTCTGGCGTCCATG-------CAAGACTCGGAGGCCTTCCTCGTTCCTGCTGCTTTGCAGGGGGcctcctccccctccccgtgccccattctcctctcactcccTGAAGTGCTTTGGGGTGTAGCTAACTTCACCTGCTGTGCCAGGTCCCTGGCAGGCCACTGAGTCTGGAAACGCAAGCTTGGTTCTGGGAACGGCTGTGGCGGTGCCTGTC---CATGGTTCTCCATCTCCTGCCCACGCCTGAGTTCCAGGGTTCCACATTCAGCCCACATGTGTCCAGCCTACTCTGCCCTCAAGCccttccttcctctctccctcccttcctcccttcctccct----tcttttcctccctc--------cttccttccttccttccttccAtc--------
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      315718 457 -  16742782 CACAGCCCCTCTGAGATGTCTTTGCCTTGCTTGATTCACGCCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGCGCCAGCTTCTTCTGGCGTCCATG-------CAAGACTGGGAGGCCTTCCTCGTTCCTGCTGCTTTGCAGGGGGcctcctccccctccccgcgccccattctcctctcactcccTGAAGTGCTTTGGGGTGTAGCTAACTTCACCTGCTGTGCCAGGTCCCTGGCGGGCCACTGAGTCTGGAAACGCAAGCTTGGTTCTGGGAACGGCTGTGGCGGTGCCTGTC---CATGGTTCTCCATCTTCTGCCCATGCCTGAGTTCCAGGGTTCCACATTCAGCCCACATGTGTCCAGCCTACTCTGCCCTCTAGCccttccttcctctctccctcccttcctcccttcctccct----tcctcccttctttt--------cctccctccttccttccttccAtc--------
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90616842 444 -  91010382 CACAGCCCCTCTGAGACGCCTTTGCTTTGCTTGATTGATGCCGCGGGCACTGGTTTCCCTTCCAAATCATCAGGCCCTGCGCCAGCTTCTTCTGGCCTGTGTG-------CGAGACTCAGAGGCCTTCCTCGTTCCTGCTGCTTTGCAGGGGGcctcctccccctccccgcgccccattctcctctcactcccTGACGTGCTTTGGGGTACAGCTAACCTCACCTGCTGTGCCAGGTCCCTGGCGGGCCACTGAGTCTGGAAACGCAAGCTTGGTGCTGGGAACAGCTGTGGCGGTGCCTGTC---TGTGGTTCTCCATCTTCTGCCCACGCCTGAGTTCCAGGGTTCCACACTCAGCCCACACGTGTCCAGCCTACTCTGCCCTCAAGCccttccttcctctctccctcccttcctccctccttccct----cct---------------------tccctccttccttccttccAtc--------
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      213286 449 -    438239 CACAGCCCCTCTGAGATGCCTTTGCCTTGCTTGATTCACACCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGCGCCAGCTTCTTCTGGCGTCCATG-------CAAGACTGGGAGGCCTTCCTCGTTCCTGCTGCTTTGCAGGGGGcctcctccccctccccgcgccccattctcctctcactcccTGAAGTGCTTTGGGGTGTAGCTAACTTCACCTGCTGTGCCAGGTCCCTGGCAGGCCACTGAGTCTGGAAACGCAAGCTTGGTTCTGGGAACGGCTGTGGCGGTGCCTGTC---CATGGTTCTCCATCTTCTGCCCATGTCTGAGTTCCAGGGTTCCACATTCAGCTCACATGTGTCCAGCCTACTCTGCCCTCAAGCccttccttcctctctccctcccttcctctcttcctccct----tcttttcc----------------tccctccttccttccttccAtc--------
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      242808 451 -    514179 CACGG-CCCTCTGAGATGCCTTTGCCTTGCTTGATTCACGCCGCGGGAACTGGTTTCCCTTCCAAATCATCAGGCCCTGCACCAGCTTCTTCTGGCGTCCGTG-------GGAGACTCGGAGGCCTTCCTGGTTCCTGCTGCTTTGCAGGGGGCCTCCT-CCCCTCCCCGCACCCCATTCTCCTCTCACTCCCTGACGTGCTTTGGGGTACAGCTAACTTCACCTGCTGTGCCAGGTCCCTGGCGGGCCACCGGGTCTGGAAACTCAAGCTTGGTTCTGGGAATGGCTGTGGCGGTGCCTGTC---CATGGTTCTCCATCTTCTGCCCACGCCTGAGTTCCAGGGTTCCACATTCAGCCCACATGTGTCCAGCCTACTCTGCCCTCAAGCccttccttcctctctccctcccttcctcccttccttcct----tctttccctcct------------tccctccttccttccttccAtc--------
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203902730 467 + 204313951 CACGGCCCCTCTGAGATGCCTTTGCCTTGCCTGATTCGCGCCGCTGGAACTGGTTTCCC-TCTAAATCATCAGGCCCTGTGCCAGCTTCGTCTGCTGTCCATG-------CGAGACTCGGAAGCCTTCCTTGTTCCTGGTTCTTTGCAGGGGGCCTTCTCCCCCTCCCCATGCCCCATACTCCTCTCACTCCCTGATGTGCTTTGGGGTAGAGCTAACTTCATCCGCTGTGCCAGGTCCCTGGCGG-CCACTGAGCCTGGAAATGCACACTTGGTTCTGGGAACAGCTGTGGCAGTGCCTGTCAT-CCTGGCTCCCCATCTCCTGCCCATGCCTGGGTTCCAGGGCTCCTCGTCTGGTTCAAGTGCATCCAGGCTACTCTGCTCTCAAGCTc-----tcctccctccctcctt-ccctgcctccttcct----tccttccttccctccctccctccctctttccttccttccttccctccctccctc
i calJac3.chr2             C 0 I 500
s saiBol1.JH378155          16056163 420 +  16417988 CACGGCCCCTCTGAGATGCCTTTGCCTTGCCCGATTCGCGCCGCTGGGACTGGCTTCCC-ACTAAATCATCAGGCCCTGCGCCAGCTTCGTCTGGCGTCCATG-------CGAGACTCAGAAGCCTTCCTTGTTCCTGGTTCTTTGCAGGGGGCCTCCTCCCCCTCCCCGTGCCCCGTTCTCCTCTCACTCCCTGATGTGTTTTGGGGTAGAGCTAACCTCACCCGCTGTGCCAGGTCCCTGGCGG-CCACTGAGCCTGGAAACGCACGCTTGGTTCTGGGAACGGCTGTGGCGGTGCCTGTCATCCCTGGCTCCCCATCTCCTGCCCATGCCTGAGTTCCAGGGCTCCACGTCCAGCCCACGTGCATCCAGCATACTCTGCTCTCAAGCTc-----tcctccctccctcctt-ccctccctccttcct----tccttc------------------------------------------------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      143441 422 +    298490 CACGGCCCCTCTGAGATGCCTTTGCCTTGCCTGATTCGCGCCGCTGGAACTGGTTTCCC-TCTAAATTATCAGGCCCTGCGCCAGCTTCGTCTGGCATCCATGCGAGACTCGAGACTCGGAAGCCTTCCTTGTTCCTGGTTCTTTGCAGGGGGCCTCCTCCCCCTCCCCATGCCCCATTCTCCTCTCACTCCCTGATGTGCTTTGTGGTAGAGCTAACTTCACCCGCTGTGCCAGGTCCCTGACGG-CCGCTGAGCCTGGAAGCGCACGCTTGATTCTGGGAACAGCTGTGGCAGTGCCTGTCATCCCTGGCTCCCCATCTCCTGCCCATGCCTGAGTTCCAGGGTTCCACGTCCGGCCCGCGTGCATCCAGCCTGCTCTGCTCTGAAGctc-----tcctccctccctccct-ccttccttccttcct----t-----------------------------------------------------
i cebCap1.NW_016108158v1   I 61 I 1
s aotNan1.NW_018503740v1    25470572 409 -  25620257 CACGGCCCCTCTGAGATGCCTTTGCCTTGCCTGGTTCGCGCCGCTGGAACTGGTTTCCC-TCTAAATCATCAGGCCCTGCGCCAGCTTCATCTGG-----AAG-------GAAGACTCGGAAGTCTTCCTTGTTCCTGGTTCTTTGCAGGGGGCCTCCTCACCCTCCACGTGCCCCATTCTCCTCTCACTCCCTGATGTGCTTTGGGGTAGAGCTAACTTCACCTGCTGTGCTAGGTCCCTGGCAG-CCACTGAGCCTGGAAACGCACGCTTGGTTCTGGGAACGGCTGTGGCGGTGCCTGTCATCCCTGGCTCCCCATCTCTCGCCCATGCCTGAGTTCCAGGGCTCCACGTCTGGCCCACGTGCATCCAGCCTACTCTGCTCTCAAGctc-----cctgccctccctccct-ccttccttctttcct----------------------------------------------------------
i aotNan1.NW_018503740v1   C 0 I 2
e otoGar3.GL873745           1918030 1178 -   2165740 I

a score=143985.000000
s hg38.chr5_KI270793v1_alt    119128 37 +    126136 tcactctctcgcccaggctgcagtgcagtggcatgag
s panTro5.chr5             181385188 37 - 181907262 tcactctcttgcccaggctgcagtacagtggcatgat
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183103882 37 - 183735486 tcactctctcgcccaggctgcagtacagtggcatgat
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      197994 34 +    698298 ---ctctctcgcccaggctgcagtgcagtggcatgat
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615033 37 - 121039945 tcactctgtcgcccaggctgcattgcagtggcatgat
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179571767 37 - 180051392 tagctctgttgcccaggctgcagtgcagtggcatgca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181305575 37 - 181584905 tagctctgttgcccaggctgcagtgcagtggcatgca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      311618 37 -   1764207 tagctctgttgcccaggctgcagtgcagtggcatgca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      316175 37 -  16742782 tagctctgttgcccaggctgcagtgcagtggcatgca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90617286 37 -  91010382 tagctctgttgcccaggctgcagtgcagtggcacgca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      213735 37 -    438239 tagctctgttgcccaggctgcagtgcagtggcatgca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      243259 37 -    514179 tagctctgttgcccaggctgcagtgcggtggcatgca
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16056583  5 +  16417988 -------------------TCAAT-------------
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      143864  5 +    298490 -------------------TCAAT-------------
i cebCap1.NW_016108158v1   I 1 C 0
s aotNan1.NW_018503740v1    25470983  5 -  25620257 -------------------TCAAT-------------
i aotNan1.NW_018503740v1   I 2 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e calJac3.chr2             203903197 500 + 204313951 I

a score=1784344.000000
s hg38.chr5_KI270793v1_alt    119165 190 +    126136 ctcagctcactgcagcctccacctcttggcttcaagcgattc-ttatgcctcagccttctgagtagctgggattacaggcatgcgccacggtacccagctaatttttgtaatttactttagtagagacagagtttcaccatgctgcccaggctggtctttaactcctggcctcaagtgatccgctcca---------cca
s panTro5.chr5             181385225 190 - 181907262 ctcagctcactgcagcctccacctcttggcttcaagcgattc-ttatgcctcagcctcctgagtagctgggattacaggcatgcgccacggtacccagctaatttttgtaattttctttagtagagacagagtttcaccatgctgcccaggctggtctttaactcctggcctcaagtgatcctcccca---------cca
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183103919 190 - 183735486 ctcagctcactgcagcctccacctcttggcttcaagcgattc-ttatgcctcagcctcctgagtagctgggattacaggcatgcgccacggtacccagctaatttttgtaattttctttagtagagacagagtttcaccatgctgcccaggctggtctttaactcctggcctcaagtgatcctcccca---------cca
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198028 190 +    698298 ctcagctcactgcagcctccacctcttggcttcaagcgattc-ttatgcctcagcctcctgagtagctgggattacaggcatgcgccatggtacccagctaatttttgtaatttactttagtagagacagagtttcaccatgctgcccaggctggtctttaactcctggcctcaagtgatccgcccca---------cca
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615070 190 - 121039945 ctcagctcactttaacctccacctcttggcttcaagcgattc-ttacgcctcagcctcctgagtagctgggattacaggcgtgcgccacggtacccagctaatttttgtaatttactttagtagaggcagagtttcaccatgctgcccaggctggtctttaactcctggcctcaagtgatccgcccca---------cca
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179571804 191 - 180051392 ctcgactcactgcaacctccacctcttggcttcaagtgattctttatgcctcagcctcctgagtagctgggattacaggcgtgggccaccgtacccagctaatttttgtaatttactttattagagacagagtttcaccatgctgcccaggctggtctttaacccctggcctcaagtgatccacccca---------cca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181305612 191 - 181584905 ctcgactcactgcaacctccacctcttggcttcaagtgattctttatgcctcagcctcctgagtagctgggattacaggcgtgggccaccgtacccagctaatttttgtaatttactttattagagacagagtttcaccatgctgcccaggctggtctttaactcctggcctcaagtgatccacccca---------cca
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      311655 188 -   1764207 ctcgactcactgcaacctccacctcttggcttcaagtgattctttatgcctcagcctcctgagtagctgggattacaggcgtgggccacggtacccagctaatttttgtaatttactttagtagagacagagtttcaccatgctgcccaggctggtctttaactcctggcctcaagtgattcacc------------cca
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      316212 190 -  16742782 ctcgactcactgcaacctctacctcttggcttcaagtgattc-ttatgcctcggcctcctgagtagctgggattacaggcatgggccaccgtacccagctaatttttgtaatttactttagtagagacagagtttcaccatgctgcccaggctggtctttaactcctggcctcaagtgatccacccca---------cca
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90617323 199 -  91010382 ctcggctcactgcaacctccacctcttggcttcaagcgattc-ttatgcctcagcctcctgagtagctgggattacaggcgtgcgccaccgtacccagctaatttttgtaatttactttagtagagacagagtttcaccatgctgcccaggctggtctttaactcctggcttcaagtgatccaccccaccatgagcccca
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      213772 190 -    438239 ctcgactcactgcaacctctacctcttggcttcaagtgattc-ttatgccttggcctcctaagtagctgggattacaggcatgggccatcgtacccagctaatttttgtaatttactttagtagagacagagtttcaccatgctgcccaggctggtctttaactcctggcctcaagtgatccacccca---------cca
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      243296 190 -    514179 cttggctcactgcaacctccacctcttggcttcaagcgattc-ttatgcctcagcctcctgagtagctgggattacaggcatgcaccaccgtacccagctaatttttgtaatttactttagtagagacagagtttcaccatgctgcccaggctggtctttaactcctggcctcaagtgatccacccca---------cca
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203903697 185 + 204313951 cTCAGT---ctgcaacctccacctcctggcttcaagcgattc-ttgtgcctcagccttctgagtagctgggattacaggcatgggccagcacacccagctaatttttgtaatgtactttagtagagac--agtttcaccatgctgcccaggctggtgttgagctcctggcctcaagtgctccgccctg---------cca
i calJac3.chr2             I 500 C 0
s saiBol1.JH378155          16056588 166 +  16417988 ---------ctgcaacctccaccttctggcttcgagcgattc-ttgtgcctt-gccttctgagtagccgggattacaggcatgggcccccacacccagc--------------tgtttgagtagagacagagtttcaccatgctgcccaggctggtctcgaactcctggcctcaagtgatccgccctg---------cca
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      143869 177 +    298490 ---------ctgcaaagtccacctcctggcttcaagcaatgc-ttgtgcctcagccttctgagtagctgggattacaggcatgggccaccacacccagctaatttttgtaatttactttagt--agac--agtttcaccatgctgcccaggctggtctcgaactcctggcctcaagtgatccgccctg---------cca
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25470988 181 -  25620257 ---------CGgcaacctctacctcctggcttcaagcgagtc-ttgtgcctcagccttccgagtagctgggattacaagcatgggccgccacacccagctaatttttgtaatttactttagtagagacagagtttcaccatgctgcccaggctggtctcaaactgctggcctcaagtgatccgccctg---------cca
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I

a score=209528.000000
s hg38.chr5_KI270793v1_alt    119355 34 +    126136 ttagcctcccaa------agtggtgggatcacaggtgtg-g
s panTro5.chr5             181385415 34 - 181907262 ttagcctcccaa------agtggtgggatcacaggtgtg-g
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104109 34 - 183735486 ttagcctcccaa------agtggtgggatcacaggtgtg-g
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198218 34 +    698298 ttagcctcccaa------agtggtgggatcacaggtgtg-g
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179571995 41 - 180051392 ttagtcccccaaagtgctagtgctgggattacaggcgtgag
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181305803 41 - 181584905 ttagtcccccaaagtgctagtgctgggattacaggcgtgag
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      311843 41 -   1764207 ttagtcccccaaagtgctagtgctgggattacaggcgtgag
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      316402 41 -  16742782 ttagtcccccaaagtgctagtgctgggattacaggcgtgag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90617522 35 -  91010382 ttagccccccaa------agtgttgggatgacaggcgtgag
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      213962 41 -    438239 ttagtcccccaaagtgctagtgctgggattacaggcgtgag
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      243486 36 -    514179 ttagcccccacaa-----agtgctaggattacaggcgtgag
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203903882 34 + 204313951 gcagcttcccaa------agtgctgggattccaggtgtga-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16056754 34 +  16417988 tcagcttcccaa------agggctgggattacaggtgtga-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      144046 34 +    298490 tcagcttcccaa------agtgctgggattacaggtgtga-
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25471169 34 -  25620257 tcagcttcccaa------agtgctggggttacaggtgtga-
i aotNan1.NW_018503740v1   C 0 I 20
e otoGar3.GL873745           1918030 1178 -   2165740 I
e nomLeu3.chr6             120615260  0 - 121039945 C

a score=151822.000000
s hg38.chr5_KI270793v1_alt    119389 29 +    126136 ccactgtgcctggccCTACATTTTCTTTA
s panTro5.chr5             181385449 29 - 181907262 ccactctgcctggccCTATATTTTCTTTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104143 29 - 183735486 ccactgtgcctggccCTATATTTTCTTTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198252 28 +    698298 ccactgtgcctggccCTATA-TTTCTTTA
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179572036 29 - 180051392 ccaccatgcctggccCTACATTGTCTTTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181305844 29 - 181584905 ccaccatgcctggccCTacattttcttta
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      311884 29 -   1764207 ccaccatgcctggccCTACATTTTCTTTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      316443 29 -  16742782 ccaccatgcctggccCTACATTTTCTTTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90617557 29 -  91010382 ccaccatgcctggACCCACATTTTCTTTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214003 29 -    438239 ccaccgtgcctggccCTACATTTTCTTTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      243522 29 -    514179 ccaccatgcctggACCTACATTTTCTTTA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203903916 22 + 204313951 -------gccTGCACATTTATTTTCCTTT
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16056788 22 +  16417988 -------gccTGCACATTTATTTTCCTTT
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      144080 22 +    298490 -------gccTGTACATTTATTTTCCTTT
i cebCap1.NW_016108158v1   C 0 C 0
e aotNan1.NW_018503740v1    25471203 20 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e nomLeu3.chr6             120615260  0 - 121039945 C

a score=223610.000000
s hg38.chr5_KI270793v1_alt    119418 39 +    126136 TGTGTCTTTTTTTCTCTATCTTCTGAGATAA--tttttt-------tt-
s panTro5.chr5             181385478 41 - 181907262 TGTGTCTTTTTTTCTCTATCTTCTGAGATAAtttttttt-------tt-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104172 39 - 183735486 TGTGTCTTTTTTTCTCTATCTTCTGAGATAA--tttttt-------tt-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198280 37 +    698298 TGTGTCTTTTTTTCTCTATCTTCTGAGAt----tttttt-------tt-
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179572065 35 - 180051392 TGTGTC-ttttttctctatctttggagataa--ttttt-----------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181305873 35 - 181584905 tgtgtc-ttttttctctatctttggagataa--ttttt-----------
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      311913 38 -   1764207 TGTGTC-TTTTTTCTCTATCTTTGGAGATAT--TTTTTT-------TT-
i macNem1.NW_012012389v1   C 0 I 4171
s cerAty1.NW_012009470v1      316472 38 -  16742782 TGTGTC-TTTTTTCTCTATCTTTGGAGATAA--tttttt-------tt-
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90617586 38 -  91010382 TGTGTC-TTTTTTCTCTATCTTTGGAGATAA--tttttt-------tt-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214032 38 -    438239 TGTGTC-TTTTTTCTCTGTCTTTGGAGATAA--tttttt-------tt-
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      243551 38 -    514179 TGTGTC-TTTTTTCTCTATCTTTGGAGATAA--tttttt-------tt-
i colAng1.NW_012118799v1   C 0 I 5
s calJac3.chr2             203903938 39 + 204313951 TGTGCCTTTTTATCTCTGTCTTCTGAGGT-A--tttttt-------ttt
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16056810 40 +  16417988 TGTGTCTTTTTATCTCTATCTTCTGAGGTAA--TGtttt-------ttt
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      144102 47 +    298490 TGTGTCTTTTTATCTCTATCTTCTGAGGTAA--ttttttttttttcttt
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25471223 39 -  25620257 TTTGTCTTTTTATCTCTATCTTCTGAGGTAA--ttttt--------ttt
i aotNan1.NW_018503740v1   I 20 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e nomLeu3.chr6             120615260  0 - 121039945 C

a score=47021.000000
s hg38.chr5_KI270793v1_alt    119457 6 +    126136 tttttt
s panTro5.chr5             181385519 6 - 181907262 tttttt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104211 6 - 183735486 tttttg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198317 6 +    698298 tttttt
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179572100 6 - 180051392 tttttt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181305908 6 - 181584905 tttttt
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      316511 6 -  16742782 tttttt
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90617624 6 -  91010382 tttttt
i chlSab2.chr4             C 0 I 178
s manLeu1.NW_012110441v1      214070 6 -    438239 tttttt
i manLeu1.NW_012110441v1   C 0 I 5
s colAng1.NW_012118799v1      243594 6 -    514179 tttttt
i colAng1.NW_012118799v1   I 5 C 0
s calJac3.chr2             203903977 6 + 204313951 tttttt
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16056850 6 +  16417988 tttttt
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      144149 6 +    298490 tttttt
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25471262 6 -  25620257 tttttt
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e nomLeu3.chr6             120615260 0 - 121039945 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=1304396.000000
s hg38.chr5_KI270793v1_alt    119463 231 +    126136 gagacaggatctggctctatcacccaggctggaatgca--gtggtgc--------------------------------------------gatctcagctcacagcagcctccacctcccaggctcaagtgatcctactgcctcagcctcccaagtagctgggaccacaggcaaagcaccaccatgcctggctagtttttgtattttgtagagacgg---ggtctcactatgatgcccaggctggtctggaactcctgggctcaagcgattctcctgcg
s panTro5.chr5             181385525 230 - 181907262 gagacaggatctggctctatcacccaggctggaatgca--gtggtgc--------------------------------------------gatctcagctcacagcagcctccacctcccaggctcaagtgatcctactgcctcagcctcccaagtagctgggaccacaggc-aagcaccaccatgcctggctagtttttgtattttgtagagacgg---ggtctcactatgatgcccaggctgctctggaactcctgggctcaagcgattctcctgcg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104217 230 - 183735486 tagacaggatctggctctatcacccaggctggaatgca--gtggtgc--------------------------------------------gatctcagctcacagcaacctccacctcccaggctcaagtgatcctactgcctcagccttccaagtagctgggaccacaggc-aagcaccaccatgcctggctagtttttgtattttgtagagacgg---ggtctcactatgatgcccaggctgctctggaactcctgggctcaagcgattctcctgcg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198323 230 +    698298 gagacaggatctggctctatcacccaggctggaatgca--gtggtgc--------------------------------------------gatctcagctcacagcagcctccacctcccaggctcaagtgatcctactgcctcagcctcccaagtagctgggaccacaggcaaagcaccaccatgcctggctggtttttgtattttgtagagac-g---ggtctcactgtgatgcccaggctggtctggaactcctgggctcaagcgattctcctgcg
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179572106 269 - 180051392 gagacgggatctggttctgtcacccaggttggaatgca--gtggtgcaatctcagctcaTAGctgtcacccaggttggaatgcagtggtgtgatctcagctcatagcagcctccacgtcccaggctcaagtgatcctcctgcctcagcctcccaagtagctgggaccacaggc-aag-----ccatgcctggctagttttggtattttgtagagatgg---ggtctcactacgttgcccaggttggtctcgaactcctgggctcaaatgattctcccgcc
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181305914 225 - 181584905 gagacgggatctggttctgtcacccaggttggaatgca--gtggtgc--------------------------------------------gatctcagctcatagcagcctccacgtcccaggctcaagtgatcctcctgcctcagcctcccaagtagctgggaccacaggc-aag-----ccatgcctggctagttttggtattttgtagagatgg---ggtctcactacgttgcccaggttggtctcgaactcctgggctcaaatgattctcccgcc
i macFas5.chr6             C 0 I 1
s cerAty1.NW_012009470v1      316517 225 -  16742782 gagaggggatctggttctgtcacccaggttggaatgca--gtggtgc--------------------------------------------gatctcagctcatagcagcctccacgtcccaggctcaagtgatcctcctgcctcagcctcccaagtagctgggaccacaggc-aag-----ccatgcctggctagttttggtattttttagagatgg---ggtctcactacgttgcccaggttggtctcgaactcctgggctcaaatgattctcctgcc
i cerAty1.NW_012009470v1   C 0 I 1
s manLeu1.NW_012110441v1      214081 225 -    438239 gagacgggatctggttctgtcacccaggttggaatgca--gtggtgc--------------------------------------------aatctcagctcatagcagcctccacgtcccaggctcaagtgatcctcctgcctcagcctcccaagtagctgggaccacaggc-aag-----ccatgcctggctagttttggcattttgtagagatgg---ggtctcactacgttgcccaggctggtctcgaactcctgggctcaaatgattctcctgcc
i manLeu1.NW_012110441v1   I 5 I 1
s colAng1.NW_012118799v1      243600 230 -    514179 gagacaggatctagctctgtcacccaggttggaatgca--gtggtgt--------------------------------------------gatctcagctcatagcagcctccacgtcccaggctcaagtgatcctcctgcctcagcctcccaagtagctgggaccacaggc-aggcaccaccatgactggctagtttttgtattttgtagagatgg---ggtctcacgacgttgcctaggttggtctcgaactactggggtcaaatgattctcccgcc
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203903983 225 + 204313951 gagacagggtctggctctgtctcccaggctggagtgca--gtggtgt--------------------------------------------gatctcagctcacagcagcctccaccgtccaggctcacgcgatcctcctgcctcagcctcccaagtagctgggacctgagac-aagcaccaccatgcccggctagcttttgtgttttgtagagacgg---ggcctggccatgctgcccaggctgatctgaaactccca-----gggcgactggcccacc
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16056856 218 +  16417988 gagaaaaggtct--------------ggctggagtgcagtgtggtgt--------------------------------------------gatctcagctcacagcagcctccaccttccaggctcaagtgatcctcctgccttagcctcccaagtagctgggacctcagac-aagcaccaccatgcctggctagcttttgtgttttgtagagacggtgaggcc---ccgtgctgcccaggctgatctgaaactcccaagctcgagcgattgccccacc
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      144155 230 +    298490 gagacagggtctggctctgtctgccaggctggagtgca--atggtgt--------------------------------------------gatctcagctcacagcagccttcaccttccaggctcaagtgatcctcctgcctcagcctcccaagtagctgggacctcagac-aagcaccaccatgcctggctagcgtctgtattttgtagagaccg---ggcctcactatgcagcccaggctgatgtgaaactcctgggctcaagcgatggccccacc
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25471268 229 -  25620257 gagacagggtctggctctgtctcccagactggagtgca--gtggtgt--------------------------------------------gatttcagctcacagcagcctccaccttccaggctcaagtgatcctcctgcctcagcctcccaagtagctgggacctcagac-cagcaccaccatgcctggctagcttttgtattttgtagagacgg---ggcctcactatgctgcccaggctgat-tgaaactcctgggctcaagcgatcgccccacc
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e nomLeu3.chr6             120615260   0 - 121039945 C
e chlSab2.chr4              90617630 178 -  91010382 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=-16549.000000
s hg38.chr5_KI270793v1_alt    119694 3 +    126136 -tta
s panTro5.chr5             181385755 3 - 181907262 -ttg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104447 3 - 183735486 -ttg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198553 3 +    698298 -ttg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615260 3 - 121039945 -tta
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572376 2 - 180051392 -ct-
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181306140 2 - 181584905 -ct-
i macFas5.chr6             I 1 C 0
s cerAty1.NW_012009470v1      316743 2 -  16742782 -ct-
i cerAty1.NW_012009470v1   I 1 C 0
s manLeu1.NW_012110441v1      214307 2 -    438239 -ct-
i manLeu1.NW_012110441v1   I 1 C 0
s colAng1.NW_012118799v1      243831 2 -    514179 -ct-
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203904208 3 + 204313951 tcg-
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16057074 3 +  16417988 tcg-
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      144385 3 +    298490 tcg-
i cebCap1.NW_016108158v1   C 0 C 0
s aotNan1.NW_018503740v1    25471497 3 -  25620257 tcg-
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e chlSab2.chr4              90617630 178 -  91010382 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=633917.000000
s hg38.chr5_KI270793v1_alt    119697 76 +    126136 gcctcccaaagtgctgggatcacaggtgtgagccaccacCTGTGGCCTGAGAGAAATTCTTAACCTCCTCTTTCAA
s panTro5.chr5             181385758 76 - 181907262 gccttccaaagtgctgggatcacaggtgtgagccaccacctctggccTGAGAGAAATTCTTAACCTCCTCTTTCAA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104450 76 - 183735486 gccttccaaagtgctgggatcacaggtgtgagccaccacctctggccTGAGAGAAATTCTTAACCTCCTCTTTCAA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198556 76 +    698298 gcctcccaaagtgctgggatcacaggtgtgagccaccacctctggccTGAGAAAAATTCTTAACCTCCTCTTTCAA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615263 76 - 121039945 gcctcccaaagtgctgggatcacaggtgtgagccaccacgtccggccTGAGAGAAATTCTTAACCTCCTCTTTCAA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572378 76 - 180051392 gcctctcaaagtgctgagttcacaggtgtgagccgccacgtccggcctgagagaaattcttaacctcctctttcaa
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181306142 76 - 181584905 gcctctcaaagtgctgagttcacaggtgtgagccgccacgtccggcctgagagaaattcttaacctcctctttcaa
i macFas5.chr6             C 0 I 1
s cerAty1.NW_012009470v1      316745 76 -  16742782 gcctctcaaagtgctgagttcacaggtgtgagccaccacatccggccTGAGAGAAATTCTTAACCTCCTCTTTCAA
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90617808 75 -  91010382 gcctcccaaagtgctgggattacaggcttgagccaccgcgcccggcc-GAGAGAAATTCTTAACCTCCTCTTTCAA
i chlSab2.chr4             I 178 I 1
s manLeu1.NW_012110441v1      214309 76 -    438239 gcctctcaaagtgctgagttcacaggtgtgagccaccacgtccggccTGAGAGAAATTCTTAACCTCCTCTTTCAA
i manLeu1.NW_012110441v1   C 0 I 1
s colAng1.NW_012118799v1      243833 76 -    514179 gcctctcaaagtgctgggatcacaggtgtgagccaccacgtccggccTGAGAGAAATTCTTAACCTCCTCTTTCAA
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203904211 76 + 204313951 gcctcccgaagtgctgggatcacaggtgtgacccgccAGGTGGGGCCTGAGAGAAATTCCTAACGTCCTCTTTCAA
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16057077 76 +  16417988 gcctcccaaagcgttgggatcacaggtgcgagccgccAGGTGGGGCCTGAGAGAAATTCCGGACCTCCTCTTTCAA
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      144388 76 +    298490 gcctcccaaagtgctgggatcacaggtgtgatccgccAGGTAGGGCCTGAGAGACATTCCTAACCTCCTCTTTCAA
i cebCap1.NW_016108158v1   C 0 I 4741
s aotNan1.NW_018503740v1    25471500 76 -  25620257 gcctcccaaagtgctgggagcacaggtgtgatccgccAGGTAGGGCCTGAGAGAAATTCCTAACCTCCTCTTTCAA
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=569518.000000
s hg38.chr5_KI270793v1_alt    119773  98 +    126136 TCCTCTGTTGAGTTTTAAA----CTTTAGTTCTCATGTGTGACTCCCGGGAGGTCTTCCTCTCTAATGT--------CCTTGTCCTTTACGGCGT--GGGGGCGATGGTGAT
s panTro5.chr5             181385834  98 - 181907262 TCCTCTGTTGAGTTTTAAA----CTTTAGTTCTCATGTGTGACTCCCGGGAGGTCTTCCTCTCTAATGT--------CCTTGTCCTTTACGGCGT--GGGGGCGATGGTGAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104526  98 - 183735486 TCCTCTGTTGAGTTTTAAA----CTTTAGTTCTCATGTGTGACTCCCGGGAGGTCTTCCTCTCTAATGT--------CCTTGTCCTTTACGGCGT--GGGGGCGATGGTGAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198632  97 +    698298 TCCTCTGTTGAGTTTTAAA----CTTTAGTTCTCATGTGTGACTCCCGGGAGGTCTTCCTCTCTAATGT--------CCTTGTCCTTTACGGCGT---GGGGCGATGGTGAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615339  98 - 121039945 TCCTCTTTTGAGTTTTAAA----CTTTAGTTCTCATGTGTGACTCCCGGGAGGTCTTCCTCTCTAATGT--------CCTTGTCCTTTACGGCGT--GGGGGCGATGGTGAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572455  97 - 180051392 tcctctgttgagttttaaa----ctttagctgtcacgtttgactcccgggaggtcttcctctctaatgg--------cctTGCCC-TTACCGCGT--GGGGGCGATGGTGAT
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181306219  97 - 181584905 tcctctgttgagttttaaa----ctttagctgtcacgtttgactcccgggaggtcttcctctctgatgg--------cctTGCCC-TTACGGCGT--GGGGGCGATGGTGAT
i macFas5.chr6             I 1 C 0
s cerAty1.NW_012009470v1      316822  97 -  16742782 TCCTCTGTTGAGTTTTAAA----CTTGAGCTGTCACGTTTGACTCTCGGGAGGTCTTCCTCGCTAATGG--------CCTTGCCC-TTACGGCGT--GGGGGCGATGGTGAT
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90617884  97 -  91010382 TCCTCTGTTGAGTTTTAAA----CTGTAGCTGTCACATTTGCCTCCCGGGAGGTCTTCCTCTCGAATGG--------CCTTGCCC-TTACGGCGT--GGGGGCGATGGTGAT
i chlSab2.chr4             I 1 C 0
s manLeu1.NW_012110441v1      214386 105 -    438239 TCCTCTGTTGAGTTTTAAA----CTTTAGCTGTCACGTTGGACTCCCGGGAGGTCTTCCTCTCTAATGGCGTGGGGCCCTTGCCC-TTACGGCGT--GGGGGCGATGGTGAT
i manLeu1.NW_012110441v1   I 1 C 0
s colAng1.NW_012118799v1      243910  97 -    514179 TCCTCTGTTGAGTTTTAAA----CTTTAGCTGTCATGTTTGACTCCT-GGAGGTCTTCCTCTCTAATGG--------CCTTGCCCGTTACGGCGT--CGGGGCGACGGTGAC
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203904287  96 + 204313951 ----GGCCTGAGTTTTCAACT--CCTCAGTTCTCAAGTGTGACTCCTGGGACGTCTTGTCTCTGAACGT--------CCTTGCCCTTTACCGGGT--GGGGGCGATGCTGAT
i calJac3.chr2             C 0 I 6
s saiBol1.JH378155          16057153  81 +  16417988 -----------------------CTTCAGTTCTCAAGTTCGACTCCCGGGAGGTCTTGTCTCTGAACGT--------CCTCGCCCTTTACGGGGTGGGGGGGCGATGGTGAC
i saiBol1.JH378155         C 0 I 6
s aotNan1.NW_018503740v1    25471576 101 -  25620257 --CGCCTCTGAGTTTTAAACCCACTTCAGTTCTCAAGTTTGACTCCTGGGAGGTCTTGTCTCTGAACGT--------CCTTGCCCTTTACGGGGT-GGGGGGCGATGGTGAC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=9100.000000
s hg38.chr5_KI270793v1_alt    119871 1 +    126136 G
s panTro5.chr5             181385932 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104624 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198729 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615437 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572552 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306316 1 - 181584905 G
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      316919 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90617981 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214491 1 -    438239 G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      244007 1 -    514179 G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203904389 1 + 204313951 G
i calJac3.chr2             I 6 C 0
s saiBol1.JH378155          16057240 1 +  16417988 G
i saiBol1.JH378155         I 6 C 0
s aotNan1.NW_018503740v1    25471677 1 -  25620257 G
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=7604.000000
s hg38.chr5_KI270793v1_alt    119872 2 +    126136 CT
s panTro5.chr5             181385933 2 - 181907262 CT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104625 2 - 183735486 CT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198730 2 +    698298 CT
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179572553 2 - 180051392 CT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306317 2 - 181584905 CT
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      316920 2 -  16742782 CT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90617982 2 -  91010382 CC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203904390 2 + 204313951 CC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16057241 2 +  16417988 CC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25471678 2 -  25620257 CT
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e nomLeu3.chr6             120615438 0 - 121039945 C
e manLeu1.NW_012110441v1      214492 0 -    438239 C
e colAng1.NW_012118799v1      244008 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=25416.000000
s hg38.chr5_KI270793v1_alt    119874 6 +    126136 GAGGCC
s panTro5.chr5             181385935 6 - 181907262 GAGGCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104627 6 - 183735486 GAGGCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198732 6 +    698298 GAGGCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179572555 6 - 180051392 GAGGCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306319 6 - 181584905 GAGGCC
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      316922 6 -  16742782 GAGGCC
i cerAty1.NW_012009470v1   C 0 C 0
s calJac3.chr2             203904392 6 + 204313951 GAGGCC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16057243 6 +  16417988 AAGGCC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25471680 6 -  25620257 GAGGCC
i aotNan1.NW_018503740v1   C 0 I 9
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e nomLeu3.chr6             120615438 0 - 121039945 C
e manLeu1.NW_012110441v1      214492 0 -    438239 C
e chlSab2.chr4              90617984 0 -  91010382 C
e colAng1.NW_012118799v1      244008 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=75032.000000
s hg38.chr5_KI270793v1_alt    119880 27 +    126136 TGCGTCTCCCTGCGGCATCTCCATCCC
s panTro5.chr5             181385941 27 - 181907262 TGCGTCTCCCTGCGGCATCTCCATCCT
i panTro5.chr5             C 0 T 28
s panPan2.chr5             183104633 27 - 183735486 TGCGTCTCCCTGCGGCATCTCCATCCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198738 27 +    698298 TGCGTCTCCCTGCGGCATCTCTATCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179572561 27 - 180051392 TGCGTCTCCCTGCGGTGTCTCCATCCC
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181306325 27 - 181584905 TGCGTCTCCCTGCGGTGTCTCCATCCC
i macFas5.chr6             C 0 T 36
s cerAty1.NW_012009470v1      316928 27 -  16742782 TGCGTCTCCCTGCGGCGTCTCCATCCC
i cerAty1.NW_012009470v1   C 0 I 1
s calJac3.chr2             203904398 27 + 204313951 GGAGTCTCCCTATGGCATCTCCAGCCC
i calJac3.chr2             C 0 I 1
s saiBol1.JH378155          16057249 27 +  16417988 GGAGCCTCCCTACGGCATCCCCATCCC
i saiBol1.JH378155         C 0 I 1
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=1000.000000
s hg38.chr5_KI270793v1_alt    119907 1 +    126136 G
s panPan2.chr5             183104660 1 - 183735486 G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198765 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203904426 1 + 204313951 G
i calJac3.chr2             I 1 C 0
s saiBol1.JH378155          16057277 1 +  16417988 G
i saiBol1.JH378155         I 1 C 0
e panTro5.chr5             181385968 28 - 181907262 T
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e nomLeu3.chr6             120615438 0 - 121039945 C
e manLeu1.NW_012110441v1      214492 0 -    438239 C
e chlSab2.chr4              90617984 0 -  91010382 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e colAng1.NW_012118799v1      244008 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306352 36 - 181584905 T
e rheMac8.chr6             179572588 1 - 180051392 I

a score=1936.000000
s hg38.chr5_KI270793v1_alt    119908 13 +    126136 GGCGCGCTATGGG
s gorGor5.CYUI01015805v1      198766  4 +    698298 GGCG---------
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203904427 13 + 204313951 GGCGCGCTCTGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16057278 13 +  16417988 GGCGAGCTCCGGG
i saiBol1.JH378155         C 0 C 0
e panTro5.chr5             181385968 28 - 181907262 T
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306352 36 - 181584905 T
e rheMac8.chr6             179572588  1 - 180051392 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=1146.000000
s hg38.chr5_KI270793v1_alt    119921 2 +    126136 CT
s panTro5.chr5             181385940 2 - 181907262 CT
i panTro5.chr5             T 28 C 0
s calJac3.chr2             203904440 2 + 204313951 CT
i calJac3.chr2             C 0 T 52
s saiBol1.JH378155          16057291 2 +  16417988 CT
i saiBol1.JH378155         C 0 C 0
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e nomLeu3.chr6             120615438 0 - 121039945 C
e manLeu1.NW_012110441v1      214492 0 -    438239 C
e chlSab2.chr4              90617984 0 -  91010382 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e colAng1.NW_012118799v1      244008 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306352 36 - 181584905 T
e rheMac8.chr6             179572588 1 - 180051392 I
e gorGor5.CYUI01015805v1      198770 0 +    698298 C
e panPan2.chr5             183104661 0 - 183735486 C

a score=6301.000000
s hg38.chr5_KI270793v1_alt    119923 26 +    126136 GTGTCTCCCCGCGGCATCTCCATCCC
s panTro5.chr5             181385942 26 - 181907262 GCGTCTCCCTGCGGCATCTCCATCCT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198770 26 +    698298 GTGTCTCCCTGCAGCATCTCCACCCC
i gorGor5.CYUI01015805v1   C 0 I 41
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306352 36 - 181584905 T
e rheMac8.chr6             179572588  1 - 180051392 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=7807.000000
s hg38.chr5_KI270793v1_alt    119949 44 +    126136 AGGCGCGCTATGGGCTGCGTCTCCCTGCGGCATCTCCATCCCCG
s panTro5.chr5             181385968 41 - 181907262 GGGCGCGCTGAGGCCTGCGTCTCCCTGCGGCTACTCCATCC---
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198837 43 +    698298 GGGCACACTATGGGCTGCGTCTCCCTGCGGCATCTCCATCCCG-
i gorGor5.CYUI01015805v1   I 41 T 84
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306352 36 - 181584905 T
e rheMac8.chr6             179572588  1 - 180051392 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=9684.000000
s hg38.chr5_KI270793v1_alt    119993 83 +    126136 GGCGCGCTGAGGCCTGAGTTTCCCTGCGGCATCTCCATCCCGGGCACACTATGGGCTGTGTCTCCCTGCGGCATCTCCATCCC
s panTro5.chr5             181386009 34 - 181907262 -------TGAGGC------------------------------------------TTGCGTCTCCCTGCAGCATCTCCATCCC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198796 83 +    698298 GGCGCGCTGAGGCCTGCGTCTCCCTGCGGCATCTCCGTCCCGGGCACACTATGGGCTGCGTCTCCCTGCGGCATCTCCATCCC
i gorGor5.CYUI01015805v1   T 84 I 18
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306352 36 - 181584905 T
e rheMac8.chr6             179572588  1 - 180051392 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=5249.000000
s hg38.chr5_KI270793v1_alt    120076 60 +    126136 GGGCACACTATGGGCTGTGTCTCCCTGCGGCATCTCCATCCCAGGCGCGCTATGGGCTGC
s panTro5.chr5             181386043 60 - 181907262 GGGCACACTGTGGGCTGCGTCTCCCTGCGGCATCTCCATCCCGGGCGCGCTCTGGGCTGC
i panTro5.chr5             C 0 T 135
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306352 36 - 181584905 T
e rheMac8.chr6             179572588  1 - 180051392 I
e gorGor5.CYUI01015805v1      198879 18 +    698298 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=1898.000000
s hg38.chr5_KI270793v1_alt    120136 25 +    126136 GTCTCCCTGCGGCATCTCCATCCCC
s gorGor5.CYUI01015805v1      198897 24 +    698298 GTCTCCCTGCGGCATCTCCAT-CCC
i gorGor5.CYUI01015805v1   I 18 C 0
e panTro5.chr5             181386103 135 - 181907262 T
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306352 36 - 181584905 T
e rheMac8.chr6             179572588  1 - 180051392 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=1088.000000
s hg38.chr5_KI270793v1_alt    120161 6 +    126136 GGGCGC
s panTro5.chr5             181385968 6 - 181907262 GGGCGC
i panTro5.chr5             T 135 C 0
s gorGor5.CYUI01015805v1      198921 6 +    698298 GGGCAG
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293 0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438 0 - 121039945 C
e manLeu1.NW_012110441v1      214492 0 -    438239 C
e chlSab2.chr4              90617984 0 -  91010382 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e colAng1.NW_012118799v1      244008 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306352 36 - 181584905 T
e rheMac8.chr6             179572588 1 - 180051392 I
e panPan2.chr5             183104661 0 - 183735486 C

a score=14156.000000
s hg38.chr5_KI270793v1_alt    120167 33 +    126136 GCTGAGGCCTGAGTTTCCCTGCGGCATCTCCAT
s panTro5.chr5             181385974 33 - 181907262 GCTGAGGCCTGCGTCTCCCTGCGGCTACTCCAT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198927 33 +    698298 ACTGTGGGCTGCATCTCCCTGCGGCATCTCCAT
i gorGor5.CYUI01015805v1   C 0 T 81
s macFas5.chr6             181306316 33 - 181584905 GCTGAGGCCTGCGTCTCCCTGCGGTGTCTCCAT
i macFas5.chr6             T 36 C 0
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572588  1 - 180051392 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=600.000000
s hg38.chr5_KI270793v1_alt    120200 2 +    126136 CC
s panTro5.chr5             181386007 2 - 181907262 CC
i panTro5.chr5             C 0 T 41
s macFas5.chr6             181306349 2 - 181584905 CC
i macFas5.chr6             C 0 C 0
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293 0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438 0 - 121039945 C
e manLeu1.NW_012110441v1      214492 0 -    438239 C
e chlSab2.chr4              90617984 0 -  91010382 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e colAng1.NW_012118799v1      244008 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572588 1 - 180051392 I
e gorGor5.CYUI01015805v1      198960 81 +    698298 T
e panPan2.chr5             183104661 0 - 183735486 C

a score=200.000000
s hg38.chr5_KI270793v1_alt    120202 2 +    126136 CC
s macFas5.chr6             181306351 2 - 181584905 CC
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181386009 41 - 181907262 T
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293 0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438 0 - 121039945 C
e manLeu1.NW_012110441v1      214492 0 -    438239 C
e chlSab2.chr4              90617984 0 -  91010382 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e colAng1.NW_012118799v1      244008 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572588 1 - 180051392 I
e gorGor5.CYUI01015805v1      198960 81 +    698298 T
e panPan2.chr5             183104661 0 - 183735486 C

a score=8646.000000
s hg38.chr5_KI270793v1_alt    120204 18 +    126136 GGGCGCGCTGAGGCCTGC
s panTro5.chr5             181385968 18 - 181907262 GGGCGCGCTGAGGCCTGC
i panTro5.chr5             T 41 C 0
s gorGor5.CYUI01015805v1      198879 18 +    698298 GGGCGCGCTGAGGCCTGC
i gorGor5.CYUI01015805v1   T 81 C 0
s macFas5.chr6             181306353 18 - 181584905 GGGCGCGCTCTGGGCTGC
i macFas5.chr6             C 0 T 57
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572588  1 - 180051392 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=5751.000000
s hg38.chr5_KI270793v1_alt    120222 38 +    126136 GTCTCCCTGCGGCATCTCTATCCCCGGCAGACTGTGGG
s panTro5.chr5             181385986 29 - 181907262 GTCTCCCTGCGGCTACTCCATCC---------TGAGGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198897 38 +    698298 GTCTCCCTGCGGCATCTCCATCCCGGGCAGACTGTGGG
i gorGor5.CYUI01015805v1   C 0 T 84
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306371 57 - 181584905 T
e rheMac8.chr6             179572588  1 - 180051392 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=10097.000000
s hg38.chr5_KI270793v1_alt    120260 42 +    126136 CTGCGTCTCCCTGCGGCATCTCCATCCCGGGCACACTATGGG
s panTro5.chr5             181386015 42 - 181907262 TTGCGTCTCCCTGCAGCATCTCCATCCCGGGCACACTGTGGG
i panTro5.chr5             C 0 T 113
s gorGor5.CYUI01015805v1      198851 42 +    698298 CTGCGTCTCCCTGCGGCATCTCCATCCCGGGCGCGCTGAGGC
i gorGor5.CYUI01015805v1   T 84 C 0
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306371 57 - 181584905 T
e rheMac8.chr6             179572588  1 - 180051392 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=391.000000
s hg38.chr5_KI270793v1_alt    120302 4 +    126136 CTGC
s gorGor5.CYUI01015805v1      198893 4 +    698298 CTGC
i gorGor5.CYUI01015805v1   C 0 C 0
e panTro5.chr5             181386057 113 - 181907262 T
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293 0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438 0 - 121039945 C
e manLeu1.NW_012110441v1      214492 0 -    438239 C
e chlSab2.chr4              90617984 0 -  91010382 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e colAng1.NW_012118799v1      244008 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306371 57 - 181584905 T
e rheMac8.chr6             179572588 1 - 180051392 I
e panPan2.chr5             183104661 0 - 183735486 C

a score=6332.000000
s hg38.chr5_KI270793v1_alt    120306 25 +    126136 GTCTCTCTGCGGCATCTCCATCCCT
s panTro5.chr5             181385944 25 - 181907262 GTCTCCCTGCGGCATCTCCATCCTG
i panTro5.chr5             T 113 C 0
s gorGor5.CYUI01015805v1      198897 25 +    698298 GTCTCCCTGCGGCATCTCCATCCCG
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306371 57 - 181584905 T
e rheMac8.chr6             179572588  1 - 180051392 I
e panPan2.chr5             183104661  0 - 183735486 C

a score=15510.000000
s hg38.chr5_KI270793v1_alt    120331 36 +    126136 GGCGCGCTGAGGACTGCGTCTGCCTGCGGCTACTCC
s panTro5.chr5             181385969 36 - 181907262 GGCGCGCTGAGGCCTGCGTCTCCCTGCGGCTACTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104661 36 - 183735486 GGCACGCTGAGGCCTGCGTCTCCCTGCGGCTACTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198922 36 +    698298 GGCAGACTGTGGGCTGCATCTCCCTGCGGCATCTCC
i gorGor5.CYUI01015805v1   C 0 C 0
e aotNan1.NW_018503740v1    25471686  9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438  0 - 121039945 C
e manLeu1.NW_012110441v1      214492  0 -    438239 C
e chlSab2.chr4              90617984  0 -  91010382 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e colAng1.NW_012118799v1      244008  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306371 57 - 181584905 T
e rheMac8.chr6             179572588  1 - 180051392 I

a score=1920.000000
s hg38.chr5_KI270793v1_alt    120367 3 +    126136 ATC
s panTro5.chr5             181386005 3 - 181907262 ATC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104697 3 - 183735486 ATC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198958 3 +    698298 ATC
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181306314 3 - 181584905 ATG
i macFas5.chr6             T 57 C 0
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293 0 +  16417988 C
e calJac3.chr2             203904442 52 + 204313951 T
e nomLeu3.chr6             120615438 0 - 121039945 C
e manLeu1.NW_012110441v1      214492 0 -    438239 C
e chlSab2.chr4              90617984 0 -  91010382 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e colAng1.NW_012118799v1      244008 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572588 1 - 180051392 I

a score=3600.000000
s hg38.chr5_KI270793v1_alt    120370 1 +    126136 C
s panTro5.chr5             181386008 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104700 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198961 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 T 27
s nomLeu3.chr6             120615438 1 - 121039945 C
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181306317 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s manLeu1.NW_012110441v1      214492 1 -    438239 C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      244008 1 -    514179 C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203904390 1 + 204313951 C
i calJac3.chr2             T 52 C 0
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293 0 +  16417988 C
e chlSab2.chr4              90617984 0 -  91010382 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572588 1 - 180051392 I

a score=1694.000000
s hg38.chr5_KI270793v1_alt    120371 1 +    126136 T
s panTro5.chr5             181386009 1 - 181907262 T
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104701 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120615439 1 - 121039945 T
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181306318 1 - 181584905 T
i macFas5.chr6             C 0 C 0
s manLeu1.NW_012110441v1      214493 1 -    438239 T
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      244009 1 -    514179 T
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203904391 1 + 204313951 C
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293 0 +  16417988 C
e chlSab2.chr4              90617984 0 -  91010382 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572588 1 - 180051392 I
e gorGor5.CYUI01015805v1      198962 27 +    698298 T

a score=15833.000000
s hg38.chr5_KI270793v1_alt    120372 5 +    126136 GAGGC
s panTro5.chr5             181386010 5 - 181907262 GAGGC
i panTro5.chr5             C 0 I 42
s panPan2.chr5             183104702 5 - 183735486 GAGGC
i panPan2.chr5             C 0 C 0
s nomLeu3.chr6             120615440 5 - 121039945 GAAGC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181306319 5 - 181584905 GAGGC
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90617984 5 -  91010382 GAGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214494 5 -    438239 GAGGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      244010 5 -    514179 GAAGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203904392 5 + 204313951 GAGGC
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293 0 +  16417988 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572588 1 - 180051392 I
e gorGor5.CYUI01015805v1      198962 27 +    698298 T

a score=12767.000000
s hg38.chr5_KI270793v1_alt    120377 4 +    126136 CTGC
s panTro5.chr5             181386057 4 - 181907262 CTGC
i panTro5.chr5             I 42 C 0
s panPan2.chr5             183104707 4 - 183735486 CTGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198935 4 +    698298 CTGC
i gorGor5.CYUI01015805v1   T 27 C 0
s nomLeu3.chr6             120615445 4 - 121039945 CTGC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181306324 4 - 181584905 CTGC
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90617989 4 -  91010382 CTGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214499 4 -    438239 CTGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      244015 4 -    514179 CTGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203904397 4 + 204313951 CGGA
i calJac3.chr2             C 0 C 0
e aotNan1.NW_018503740v1    25471686 9 -  25620257 I
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293 0 +  16417988 C
e cerAty1.NW_012009470v1      316955 1 -  16742782 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572588 1 - 180051392 I

a score=105365.000000
s hg38.chr5_KI270793v1_alt    120381 24 +    126136 GTCTCCCTGCGGCATCTCCAT-CCC
s panTro5.chr5             181386061 24 - 181907262 GTCTCCCTGCGGCATCTCCAT-CCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104711 24 - 183735486 GTCTCCCTGCGGCATCTCCAT-CCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198939 24 +    698298 ATCTCCCTGCGGCATCTCCAT-CCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615449 25 - 121039945 ATCTCCCTGCGCCATCTCCATCCCC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181306328 24 - 181584905 GTCTCCCTGCGGTGTCTCCAT-CCC
i macFas5.chr6             C 0 I 1
s chlSab2.chr4              90617993 24 -  91010382 GTCTCCCTGCGGCGTCTCCAT-CCC
i chlSab2.chr4             C 0 I 1
s manLeu1.NW_012110441v1      214503 24 -    438239 GTCTCCCTGCGGCGTCTCCAT-CCC
i manLeu1.NW_012110441v1   C 0 I 1
s colAng1.NW_012118799v1      244019 24 -    514179 GTCTGCCTGCGGCGTCTCCAT-CCC
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203904401 24 + 204313951 GTCTCCCTATGGCATCTCCAG-CCC
i calJac3.chr2             C 0 I 1
s aotNan1.NW_018503740v1    25471695 24 -  25620257 GTCTCCCTACGGCATCTCCAC-CCC
i aotNan1.NW_018503740v1   I 9 I 1
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e cerAty1.NW_012009470v1      316955  1 -  16742782 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572588  1 - 180051392 I

a score=109878.000000
s hg38.chr5_KI270793v1_alt    120405 16 +    126136 GGGCGCGCTCTGGGCT
s panTro5.chr5             181386085 16 - 181907262 GGGCGCGCTCTGGGCT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104735 16 - 183735486 GGGCACACTGTGGGCT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198963 16 +    698298 GGGCGCGCTCTGGGCT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615474 16 - 121039945 CAGCGCGCTCTGGGCT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572589 16 - 180051392 GGGCGCGCTCTGGGCT
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181306353 16 - 181584905 GGGCGCGCTCTGGGCT
i macFas5.chr6             I 1 C 0
s cerAty1.NW_012009470v1      316956 16 -  16742782 GGGCGCGCTCTGGGCT
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90618018 16 -  91010382 GGGCGCGCTCTGGGCT
i chlSab2.chr4             I 1 C 0
s manLeu1.NW_012110441v1      214528 16 -    438239 GGGCGCGCTCTGGGCT
i manLeu1.NW_012110441v1   I 1 C 0
s colAng1.NW_012118799v1      244044 16 -    514179 GGGCGCGCTCTCGGCT
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203904426 16 + 204313951 GGGCGCGCTCTGGGCT
i calJac3.chr2             I 1 C 0
s aotNan1.NW_018503740v1    25471720 16 -  25620257 GGGCGCGCTCTGGGCT
i aotNan1.NW_018503740v1   I 1 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057293  0 +  16417988 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=15047.000000
s hg38.chr5_KI270793v1_alt    120421 2 +    126136 GC
s panTro5.chr5             181386101 2 - 181907262 GC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183104751 2 - 183735486 GC
i panPan2.chr5             C 0 M 1396
s gorGor5.CYUI01015805v1      198979 2 +    698298 GC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615490 2 - 121039945 GC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572605 2 - 180051392 GC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306369 2 - 181584905 GC
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      316972 2 -  16742782 GC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618034 2 -  91010382 GC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214544 2 -    438239 GC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      244060 2 -    514179 GC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203904442 2 + 204313951 AC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16057293 2 +  16417988 GC
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25471736 2 -  25620257 AC
i aotNan1.NW_018503740v1   C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I

a score=431683.000000
s hg38.chr5_KI270793v1_alt    120423 76 +    126136 TTGTGATTCCATAGCTGGGCTCCGCGCCTGAGCACTGGTCACCCCTTCCCCTGGCTCCACTGGTGTGAGGGGCGGG
s panTro5.chr5             181386103 76 - 181907262 TTGTGATTCCATAGCTGGGCTCCGCGCCTGAGCACCGGTCACCCCTTCCCCTGGCTCCACTGGTGTGAGGGGCGGG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      198981 76 +    698298 TTGTGATTCCATAGCTGGGCTCCGCACCTGAGCACCCGTCACCCCTTCCCCTGGCTCCACTGGTGTGAGGGGCGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615492 76 - 121039945 TTGGGATTCCATAGCTGGGCTCCGCGCCTGAGCACCCATCACCCCTTCCCCTGGCTCCACTGGTGTGAGGGGCGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572607 76 - 180051392 CTGTGATTCCGCAGCTGGGCTCCGAGGCTGAGCACCCCTCACCCCTTCTCCTGGCTCCATTGGTGTGAGGGGCGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306371 76 - 181584905 CTGTGATTCCGCAGCTGGGCTCCGAGGCTGAGCACCCCTCACCCCTTCTCCTGGCTCCATTGGTGTGAGGGGCGGG
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      316974 76 -  16742782 TTGTGATTCCGTAGCTGGGCTCCGAGGCTGAGCACTCCTCACCCCTTCCCCTGGCTCCATCGGTGTGAGGGGTGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618036 76 -  91010382 TTGTGATTCCGTAGCTGGGCTCCGAGGCTGAGTACCCCTCACCCCTTCCCCTGGCTCCATCGCTGTGAGGGGCGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214546 76 -    438239 TTGTGATTCCGTAGCTGGGCTCCGAGGCTGTGCACCCCTCACCCCTTCCCCTGGCTCCATCGGTGTGAGGGGCGGG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      244062 76 -    514179 TTGTGATTCCATAGCTGGGCTCCGAGGCTGAGCACCCCTCACCCCTTCCCCTGGCTCCATCGGTGTGAGGGGCGGG
i colAng1.NW_012118799v1   C 0 M 374
s calJac3.chr2             203904444 74 + 204313951 TTGTGATTCCATAGCTGGGTTCGGAGCCCCAGCACCCCTCAGCC--TTCCCCGGCTCCCCTGGTGTGAGGGGCGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16057295 74 +  16417988 CTGTGATGCCACAGCCGGGTTCGGAGCCCGAGCACCCCTCAGCC--TTCCCCGGCTCCCCTAGTGTGAGGGGCGGG
i saiBol1.JH378155         C 0 C 0
s aotNan1.NW_018503740v1    25471738 73 -  25620257 CTGTGATTCCGTAGCTGGGTTCGGAGCCGGA-CACCGCTCAGCC--TTCCCTGGCTCCCCTGGTGTGAggggcggg
i aotNan1.NW_018503740v1   C 0 N 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=100375.000000
s hg38.chr5_KI270793v1_alt    120499 28 +    126136 CGCCAAGAAGCCGAATGGGAACTGG-----AGC
s panTro5.chr5             181386179 28 - 181907262 CGCCAAGAAGCCGAATGGGAACTGG-----AGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199057 28 +    698298 CGCCAAGAAGCCGAATGGGAACTGG-----AGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615568 28 - 121039945 CGCCAATAAGCCGAATGGGAACTGG-----AGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572683 28 - 180051392 CGCCAGGAAGCTGAAGGAGAACTGC-----AGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306447 28 - 181584905 CGCCAGGAAGCTGAAGGAGAACTGC-----AGC
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317050 28 -  16742782 CGCCAAGAAGCTGAAGGAGAACTGC-----AGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618112 28 -  91010382 CGCCAAGAAGCTGAACGGGAACTGC-----AGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214622 28 -    438239 CGCCAGGAAGCTGAAGGAGAACTGC-----AGC
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203904518 32 + 204313951 -GCCAAGAAGCTGAGTGGGAACGGAACGGCAGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16057369 27 +  16417988 -GCCCAGGAGCTGCGTGGGAATGAG-----AGC
i saiBol1.JH378155         C 0 M 4692
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=36757.000000
s hg38.chr5_KI270793v1_alt    120527 11 +    126136 CACATGGGTGT
s panTro5.chr5             181386207 11 - 181907262 CACATGGGTGT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199085 11 +    698298 CACATGGGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615596 11 - 121039945 CACACGGGTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572711 11 - 180051392 CACACGGGTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306475 11 - 181584905 CACACGGGTGT
i macFas5.chr6             C 0 I 7
s cerAty1.NW_012009470v1      317078 11 -  16742782 CACACGGGTGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618140 11 -  91010382 CGCACGGGTGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214650 11 -    438239 CACACGGGTGT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203904550 10 + 204313951 CGCA-GGCTGT
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=11050.000000
s hg38.chr5_KI270793v1_alt    120538 5 +    126136 GGGTG
s panTro5.chr5             181386218 5 - 181907262 GGGTG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199096 4 +    698298 GGGT-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615607 5 - 121039945 GGGTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572722 5 - 180051392 GGGCG
i rheMac8.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317089 5 -  16742782 GGGCG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618151 5 -  91010382 GGGCG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214661 5 -    438239 GGGTG
i manLeu1.NW_012110441v1   C 0 I 8
s calJac3.chr2             203904560 5 + 204313951 GGGCG
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306486 7 - 181584905 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=2800.000000
s hg38.chr5_KI270793v1_alt    120543 1 +    126136 G
s panTro5.chr5             181386223 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199100 1 +    698298 G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615612 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572727 1 - 180051392 G
i rheMac8.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317094 1 -  16742782 G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618156 1 -  91010382 G
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203904565 1 + 204313951 G
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214666 8 -    438239 I
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306486 7 - 181584905 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=13203.000000
s hg38.chr5_KI270793v1_alt    120544 12 +    126136 GCATTTGGGTGT
s panTro5.chr5             181386224 12 - 181907262 GCATTTGGGTGT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199101 12 +    698298 GCATTTGGGTGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615613 12 - 121039945 GCATTTGGGTGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572728 12 - 180051392 GGACTCGGGTGT
i rheMac8.chr6             C 0 I 29
s calJac3.chr2             203904566 12 + 204313951 GGACTTGGGCGT
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214666  8 -    438239 I
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306486  7 - 181584905 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=422.000000
s hg38.chr5_KI270793v1_alt    120556 1 +    126136 A
s panTro5.chr5             181386236 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199113 1 +    698298 A
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615625 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203904578 1 + 204313951 G
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214666 8 -    438239 I
e chlSab2.chr4              90618157 0 -  91010382 C
e cerAty1.NW_012009470v1      317095 0 -  16742782 C
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306486 7 - 181584905 I
e rheMac8.chr6             179572740 29 - 180051392 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=16916.000000
s hg38.chr5_KI270793v1_alt    120557 30 +    126136 GCGGGGAGATTCAGG-----------------------------CGTCTGTGGGGTGGA-
s panTro5.chr5             181386237 30 - 181907262 GCGGGGAGATTCGGG-----------------------------CGTCTGTGGGGTGGG-
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199114 29 +    698298 GCGGGGAGATTCAGG-----------------------------CGTCtgtggggtgg--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615626 59 - 121039945 GCGGGGAGATTTGGGTGTCTGTGGGTGTAGCGGGGAGATTTGGATGTCTGTGGGGTGAG-
i nomLeu3.chr6             C 0 C 0
s manLeu1.NW_012110441v1      214674 28 -    438239 --GCGGGGACTCGGG-----------------------------TGTCTGCGGGGCGGG-
i manLeu1.NW_012110441v1   I 8 C 0
s calJac3.chr2             203904579 30 + 204313951 GCCAGG-GATTCAGC-----------------------------TGTCTGTGGGGGGCGG
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306486  7 - 181584905 I
e rheMac8.chr6             179572740 29 - 180051392 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=36354.000000
s hg38.chr5_KI270793v1_alt    120587 26 +    126136 GATTCGGGCGTCTGTGGGGTGGGGAT
s panTro5.chr5             181386267 26 - 181907262 GATTCGGGCGTCTGTGGGGTGGCGAT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199143 26 +    698298 gattcgggcgtctgtggggcagggat
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120615685 26 - 121039945 GATTCGGGTATCTGTGGGGTGGGGAT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181306493 26 - 181584905 gactcgggtgtgggcggggcggggac
i macFas5.chr6             I 7 C 0
s manLeu1.NW_012110441v1      214702 26 -    438239 GACTCGGGTGTCTGCGGGGCGGGGAT
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203904609 26 + 204313951 GGTTAGGGCGTCTGTGGGGGCGGGGT
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572740 29 - 180051392 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=32990.000000
s hg38.chr5_KI270793v1_alt    120613 36 +    126136 TCGGGCGTCTGTGGGGTGGAGATTCGGGCGTCTGTG--
s panTro5.chr5             181386293 36 - 181907262 TCGGGCGTCTGTGGGGTGGCGATTCGGGCGTCTGTG--
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120615711 36 - 121039945 TCGGGCGTCTGTGGGGTGGAGATTCGGGCGTCTGTG--
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181306519 31 - 181584905 tcgggtgt-----gggcggggATTCGGGTGTCTGCG--
i macFas5.chr6             C 0 T 64
s manLeu1.NW_012110441v1      214728 36 -    438239 TCAGGTGTCTGCGGGGCGGGGATTCGGGTGTCTGtg--
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203904635 38 + 204313951 TAGGGCGTCTGTGGAGGCGGGGTTAGGGCGTCTGTGGG
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572740 29 - 180051392 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=10767.000000
s hg38.chr5_KI270793v1_alt    120649 15 +    126136 GGGTGGGGATTCGGG
s panTro5.chr5             181386329 15 - 181907262 GGGTGGGGATTCGGG
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120615747 15 - 121039945 GGGTGGGAATTCGGG
i nomLeu3.chr6             C 0 C 0
s manLeu1.NW_012110441v1      214764 15 -    438239 gggcagggactcggg
i manLeu1.NW_012110441v1   C 0 I 4
s calJac3.chr2             203904673 15 + 204313951 GGGCGGGCATTAGGG
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306550 64 - 181584905 T
e rheMac8.chr6             179572740 29 - 180051392 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=14127.000000
s hg38.chr5_KI270793v1_alt    120664 31 +    126136 CGTCTGT--GGGGTGAGGATTCGGGCGTCTGTG
s panTro5.chr5             181386344 31 - 181907262 CGTCTGT--GGGGTGGGGATTCGGGCGTCTGTG
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120615762 31 - 121039945 CGTCTGT--GGGGTGGGGATTCGGGCGTCTGTG
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203904688 33 + 204313951 CGTCTGTGAGGGACAGGGAGTCGGGTGTCTGTG
i calJac3.chr2             C 0 I 1
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779  4 -    438239 I
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306550 64 - 181584905 T
e rheMac8.chr6             179572740 29 - 180051392 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=2890.000000
s hg38.chr5_KI270793v1_alt    120695 7 +    126136 -GGGTGGA
s panTro5.chr5             181386375 7 - 181907262 -GGGTGGA
i panTro5.chr5             C 0 T 23
s nomLeu3.chr6             120615793 7 - 121039945 -GGGTGGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181306486 7 - 181584905 -gggcggg
i macFas5.chr6             T 64 C 0
s calJac3.chr2             203904722 7 + 204313951 GGGACGG-
i calJac3.chr2             I 1 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779 4 -    438239 I
e chlSab2.chr4              90618157 0 -  91010382 C
e cerAty1.NW_012009470v1      317095 0 -  16742782 C
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572740 29 - 180051392 I
e gorGor5.CYUI01015805v1      199169 0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=21452.000000
s hg38.chr5_KI270793v1_alt    120702 34 +    126136 GATTCGGGCGTCTGTGGGGTG-GGGATTTGGGCGT
s panTro5.chr5             181386359 34 - 181907262 GATTCGGGCGTCTGTGGGGTG-GAGATTCGGGTGT
i panTro5.chr5             T 23 T 46
s nomLeu3.chr6             120615800 34 - 121039945 GATTCGGGCGTCTGTGGGGTG-GGGATTCGGGCGT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181306493 34 - 181584905 gactcgggtgtgggcggggcg-gggactcgggtgt
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203904729 35 + 204313951 GGTTAGGGCGTCTGTGGGAGGCGGGGTTAGGGCGT
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779  4 -    438239 I
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572740 29 - 180051392 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=5111.000000
s hg38.chr5_KI270793v1_alt    120736 11 +    126136 CTGTG-GGGTGA
s panTro5.chr5             181386347 11 - 181907262 CTGTG-GGGTGG
i panTro5.chr5             T 46 C 0
s nomLeu3.chr6             120615834 11 - 121039945 CTGTG-GGGTGG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181306527  6 - 181584905 ------gggcgg
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203904764 12 + 204313951 CTGTGAGGACGG
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779  4 -    438239 I
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244138 374 -    514179 M
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e rheMac8.chr6             179572740 29 - 180051392 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=25137.000000
s hg38.chr5_KI270793v1_alt    120747 35 +    126136 GGATTCGGGCGTCTGTGGGG-TGGGGATTCGGGCGT
s panTro5.chr5             181386358 35 - 181907262 GGATTCGGGCGTCTGTGGGG-TGGAGATTCGGGTGT
i panTro5.chr5             C 0 T 46
s nomLeu3.chr6             120615845 35 - 121039945 GGATTCGGGCGTCTGTGGTG-TGGAGATTCGGGCGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572769 12 - 180051392 ------------------------GGACTCGGGTGT
i rheMac8.chr6             I 29 C 0
s macFas5.chr6             181306533 12 - 181584905 ------------------------ggATTCGGGTGT
i macFas5.chr6             C 0 C 0
s colAng1.NW_012118799v1      244512 35 -    514179 GGACTCGGGTGTCTGTGAGG-CGGGGACTCGGGTGT
i colAng1.NW_012118799v1   M 374 C 0
s calJac3.chr2             203904776 36 + 204313951 GAACTCGGGCGTCTGcgaggacggggagtcgggcgt
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779  4 -    438239 I
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=59884.000000
s hg38.chr5_KI270793v1_alt    120782 40 +    126136 --CTGTGGGGTGGGGATTCGGGCGTCTGT--GGGGTGGGGATTC
s panTro5.chr5             181386347 40 - 181907262 --CTGTGGGGTGGGGATTCGGGCGTCTGT--GGGGTGGAGATTC
i panTro5.chr5             T 46 C 0
s nomLeu3.chr6             120615880 40 - 121039945 --CTGTGGGGTGGGGATTCGGGTGTCTGT--GGTGTGGAGATTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572781 40 - 180051392 --CTGCGGGGCGGGGACTCGGGTGTCTGC--GGGGCGGGGACTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306545 40 - 181584905 --CTGCGGGGCGGGGACTCGGGTGTCTGC--GGGGCGGGGACTC
i macFas5.chr6             C 0 C 0
s colAng1.NW_012118799v1      244547 40 -    514179 --CTGTGAGGCGGGGACTCGGGTGTCTGT--GAGGCGGGGACTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203904812 44 + 204313951 atgcgaggggcgggaactcgggcgtctgtgaggggcgggaactc
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779  4 -    438239 I
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=7659.000000
s hg38.chr5_KI270793v1_alt    120822 6 +    126136 GGGCGT
s panTro5.chr5             181386387 6 - 181907262 GGGTGT
i panTro5.chr5             C 0 T 69
s nomLeu3.chr6             120615920 6 - 121039945 GGGCGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572821 6 - 180051392 GGGTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306585 6 - 181584905 GGGTGT
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203904856 6 + 204313951 gggcgt
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779 4 -    438239 I
e chlSab2.chr4              90618157 0 -  91010382 C
e cerAty1.NW_012009470v1      317095 0 -  16742782 C
e colAng1.NW_012118799v1      244587 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e gorGor5.CYUI01015805v1      199169 0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=15726.000000
s hg38.chr5_KI270793v1_alt    120828 23 +    126136 CTGTG-GGGTGGGGATTCGGGCGT
s nomLeu3.chr6             120615926 23 - 121039945 CTGTG-GGGTGGGGATTCGGTCGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572827 23 - 180051392 CTGCG-GGGCGGGGACTCGGGTGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306591 23 - 181584905 CTGCG-GGGCGGGGACTCGGGTGT
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203904862 24 + 204313951 ctgtgaggacggggagtcgggcgt
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181386393 69 - 181907262 T
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779  4 -    438239 I
e chlSab2.chr4              90618157  0 -  91010382 C
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244587  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=51698.000000
s hg38.chr5_KI270793v1_alt    120851 53 +    126136 CTGCG-GGGTGGAGATTCGGGCGTCTGCG-GGGTGGGGATTCGGGCGTCTGTGGG-------
s panTro5.chr5             181386324 53 - 181907262 CTGTG-GGGTGGGGATTCGGGCGTCTGTG-GGGTGGGGATTCGGGCGTCTGTGGG-------
i panTro5.chr5             T 69 I 5
s nomLeu3.chr6             120615949 53 - 121039945 CTGTG-GGGTGGGGATTTGGGCATCTGTG-GGGGGAGGATTCAGGCATCTGTGGG-------
i nomLeu3.chr6             C 0 I 6
s rheMac8.chr6             179572850 53 - 180051392 CTGCG-GGGCGGGGATTCGGGTGTCTGCG-GGGCGGGGACTCGGGTGTCTGCGGG-------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306614 53 - 181584905 CTGCG-GGGCGGGGATTCGGGTGTCTGCG-GGGCGGGGACTCGGGTGTCTGCGGG-------
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90618157 19 -  91010382 ------------------------------------GGACTCGGGTGTCTGTGGG-------
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203904886 62 + 204313951 ctgtgaggacggggagtcgggcgtctgtgaggacgggaactcgggcgtctgcgaggggcggg
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779  4 -    438239 I
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244587  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=-6157.000000
s hg38.chr5_KI270793v1_alt    120904 25 +    126136 GATTCGGGTGTC---GACTGTGGGGTGG
s panTro5.chr5             181386382 25 - 181907262 GATTCGGGTGTC---GACTGTGGGGTGG
i panTro5.chr5             I 5 C 0
s nomLeu3.chr6             120616008 22 - 121039945 GATTCGGGTAT------CTGTGGGGGGA
i nomLeu3.chr6             I 6 C 0
s rheMac8.chr6             179572903  4 - 180051392 -------------------GCGG-----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306667  4 - 181584905 -------------------GCGG-----
i macFas5.chr6             C 0 C 0
s chlSab2.chr4              90618176  4 -  91010382 -------------------GCGG-----
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203904948 23 + 204313951 aactcgggcgtctgtgagggcgg-----
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779  4 -    438239 I
e cerAty1.NW_012009470v1      317095  0 -  16742782 C
e colAng1.NW_012118799v1      244587  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=44058.000000
s hg38.chr5_KI270793v1_alt    120929 20 +    126136 GGATTCGGGCGTCTGTGGGG
s panTro5.chr5             181386407 20 - 181907262 GGATTCAGGCGTCTGTGGGG
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120616030 20 - 121039945 GGATTCAGGCATCTGTGGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572907 20 - 180051392 GGATTCGGGTGTCTGtgggg
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306671 20 - 181584905 GGATTCGGGTGTCTGtgggg
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317095 20 -  16742782 GGACTCGGGTGTCTGCGGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618180 20 -  91010382 GGACTCGGGTGTCTGtgggg
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203904971 20 + 204313951 gAACTCCGGCGTCTGTGAGG
i calJac3.chr2             C 0 I 742
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779  4 -    438239 I
e colAng1.NW_012118799v1      244587  0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e gorGor5.CYUI01015805v1      199169  0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=3279.000000
s hg38.chr5_KI270793v1_alt    120949 2 +    126136 CA
s panTro5.chr5             181386427 2 - 181907262 CA
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120616050 2 - 121039945 CA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572927 2 - 180051392 ca
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306691 2 - 181584905 ca
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317115 2 -  16742782 CG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618200 2 -  91010382 ca
i chlSab2.chr4             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203904991 742 + 204313951 I
e manLeu1.NW_012110441v1      214779 4 -    438239 I
e colAng1.NW_012118799v1      244587 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e gorGor5.CYUI01015805v1      199169 0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=11598.000000
s hg38.chr5_KI270793v1_alt    120951 5 +    126136 GGGAT
s panTro5.chr5             181386429 5 - 181907262 GGGAT
i panTro5.chr5             C 0 C 0
s nomLeu3.chr6             120616052 5 - 121039945 GGGAT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572929 5 - 180051392 gggac
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306693 5 - 181584905 gggac
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317117 5 -  16742782 GGGAC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618202 5 -  91010382 gggac
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203905733 5 + 204313951 GGGAT
i calJac3.chr2             I 742 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779 4 -    438239 I
e colAng1.NW_012118799v1      244587 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e gorGor5.CYUI01015805v1      199169 0 +    698298 C
e panPan2.chr5             183104753 1396 - 183735486 M

a score=1973.000000
s hg38.chr5_KI270793v1_alt    120956 2 +    126136 TG
s panTro5.chr5             181386434 2 - 181907262 TG
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199169 2 +    698298 tg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616057 2 - 121039945 TC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572934 2 - 180051392 tc
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306698 2 - 181584905 tc
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317122 2 -  16742782 TC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618207 2 -  91010382 tc
i chlSab2.chr4             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905738 0 + 204313951 C
e manLeu1.NW_012110441v1      214779 4 -    438239 I
e colAng1.NW_012118799v1      244587 0 -    514179 C
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=30285.000000
s hg38.chr5_KI270793v1_alt    120958 7 +    126136 GGGTGTT
s panTro5.chr5             181386436 7 - 181907262 GGGTGTT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199171 7 +    698298 gggtgtt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616059 7 - 121039945 GGGTGTT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572936 7 - 180051392 gggtgtt
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306700 7 - 181584905 gggtgtt
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317124 7 -  16742782 GGGTGTT
i cerAty1.NW_012009470v1   C 0 I 1
s chlSab2.chr4              90618209 7 -  91010382 gggtgtt
i chlSab2.chr4             C 0 I 1
s colAng1.NW_012118799v1      244587 7 -    514179 GGGTGTT
i colAng1.NW_012118799v1   C 0 I 1
s calJac3.chr2             203905738 7 + 204313951 GGGTGTT
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779 4 -    438239 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e panPan2.chr5             183104753 1396 - 183735486 M

a score=1500.000000
s hg38.chr5_KI270793v1_alt    120965 1 +    126136 G
s panTro5.chr5             181386443 1 - 181907262 G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106155 1 - 183735486 G
i panPan2.chr5             M 1396 C 0
s gorGor5.CYUI01015805v1      199178 1 +    698298 g
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616066 1 - 121039945 G
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203905745 1 + 204313951 G
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      214779 4 -    438239 I
e chlSab2.chr4              90618216 1 -  91010382 I
e cerAty1.NW_012009470v1      317131 1 -  16742782 I
e colAng1.NW_012118799v1      244594 1 -    514179 I
e macNem1.NW_012012389v1      311951 4171 -   1764207 I
e macFas5.chr6             181306707 0 - 181584905 C
e rheMac8.chr6             179572943 0 - 180051392 C

a score=61276.000000
s hg38.chr5_KI270793v1_alt    120966 11 +    126136 GGGGTTGAGGA
s panTro5.chr5             181386444 11 - 181907262 GGGGTTGAGGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106156 11 - 183735486 GGGGTTGAGGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199179 11 +    698298 ggggttgagga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616067 11 - 121039945 GGGGTTGAGGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572943 11 - 180051392 ggggttgggga
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306707 11 - 181584905 ggggttgggga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      316122 11 -   1764207 gggGTTGGGGA
i macNem1.NW_012012389v1   I 4171 C 0
s cerAty1.NW_012009470v1      317132 10 -  16742782 -GGGTTGGGGA
i cerAty1.NW_012009470v1   I 1 C 0
s chlSab2.chr4              90618217 10 -  91010382 -gggttgggga
i chlSab2.chr4             I 1 C 0
s manLeu1.NW_012110441v1      214783 11 -    438239 ggggttgggga
i manLeu1.NW_012110441v1   I 4 C 0
s colAng1.NW_012118799v1      244595 10 -    514179 -GGGTTGGGGA
i colAng1.NW_012118799v1   I 1 C 0
s calJac3.chr2             203905746  4 + 204313951 -------GGGG
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1918030 1178 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M

a score=211802.000000
s hg38.chr5_KI270793v1_alt    120977 28 +    126136 TGGGGTGCCAGTGTCTTTGGATCCCCCC
s panTro5.chr5             181386455 28 - 181907262 TGGGGTGCCAGTGTCTTTGGATCCCCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106167 28 - 183735486 TGGGGTGCCAGTGTCTTTGGATCCCCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199190 27 +    698298 tggggTGCCAGTGTCTTTGGAT-CCCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616078 28 - 121039945 TGGGGTGCCAGTGTCTTTGGGTCCCCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572954 28 - 180051392 tgggATGCCAGTGTCTTTGGATCCCCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306718 28 - 181584905 tgggATGCCAGTGTCTTTGGATCCCCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      316133 28 -   1764207 TGGGATGCCAGTGTCTTTGGATCCCCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      317142 28 -  16742782 TGGGATGCCAGTGTCTTTGGATCCCCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618227 28 -  91010382 tgggATGCCAGTGTCTTTGGATCCCCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214794 28 -    438239 tgggATGCCAGTGTCTTTGGATCCCCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      244605 28 -    514179 TGGGATGCCAGTGTCTTTGGATCCCCCT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203905750 28 + 204313951 TCAGATGCCAGTGTTTCTGGATCACCCC
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1919208 28 -   2165740 TGGGGTGCCAGAGTCTTTGGGTTCCTCC
i otoGar3.GL873745         I 1178 I 15
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M

a score=550347.000000
s hg38.chr5_KI270793v1_alt    121005 85 +    126136 AGAATgggcgcggtggctcacacctgtaatcccagcactttgggaagccgcggctggaggatcacatgagcccaagagttttaga
s panTro5.chr5             181386483 85 - 181907262 AGAATgggtgcagtggctcacacctataatcccagcactttgggaagccaaggctggaggatcacatgagcccaagagttttaga
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106195 85 - 183735486 AGAATgggtgcagtggctcacatctataatcccagcactttgggaagccaaggctggaggatcacatgagcccaagagttttaga
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199217 85 +    698298 AGAATgggggcagtggctcacacctataatcccagcactttgggaagccaaggctggaggatcacatgagcccaagagttttaga
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616106 85 - 121039945 AGGATgggtgcagtggctcacacctataatcccagcactttgggaagccaaggctggaggatcacatgagcccaagagttttaga
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179572982 84 - 180051392 AGGATgagtgcagtggctca-acctgtaatcccagcactttgggaagccaaggctggaggatcacatgagcccaggagtttgaga
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181306746 84 - 181584905 AGGATgagtgcagtggctca-acctgtaatcccagcactttgggaagccaaggctggaggatcacatgagcccaggagtttgaga
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      316161 84 -   1764207 AGGATgagtgcagtggctca-acctgtaatcccagcactttgggaagccaaggctggaggatcacatgagcccaggagtttgaga
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      317170 84 -  16742782 AGGATgagtgcagtggctca-acctgtaatcccagcactttgggaagccaaggctggaggatcacatgagcccaggagtttgaga
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618255 84 -  91010382 AGGATgagtgcagtggctca-acctgtaatcccagcactttgggaagccaaggctggaggatcacatgagcccaggagtttgaga
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      214822 84 -    438239 AGGATgagtgcagtggctca-acctgtaatcccagcactttgggaagccaaggctggaggatcacatgagcccaggagtttgaga
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      244633 84 -    514179 GGGATgagtgcagtggctca-acctgtcatcccagcactttgggaagccaaggctggaggatcacatgagcccaggagtttgaga
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203905778 84 + 204313951 Aggacgggcgtggtggctga-gcctgtaatcccagcactttgggaagcccaggctggaggatggcatgagcccaggagttttaaa
i calJac3.chr2             C 0 I 1007
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M

a score=316539.000000
s hg38.chr5_KI270793v1_alt    121090 75 +    126136 ccagcatgggcaacatggtgaaa-aaaatctctacaaaaaatagtaaaattagccaggcctggtggtgctcgcctg
s panTro5.chr5             181386568 75 - 181907262 ccagcctgggcaacatggtgaaa-aaaatctctacaaaaaatagtaaaattagccaggcgtggtggtgcttgcctg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106280 75 - 183735486 ccagcctgggcaacatggtgaaa-aaaatctctacaaaaaatagtaaaattagccaggcgtggtggtgcttgcctg
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199302 74 +    698298 ctagcctgggcaacatggtgaaa-aaaatctctacaaaaaatagaaaaattagccaggcct-gtggtgcttgcctg
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616191 16 - 121039945 ccagcctgggcaacat------------------------------------------------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179573066 76 - 180051392 ccaggctgggcaacatggtgaaaccccatctctacaaaaaatacaaaaattagccaggcctggtggtgcttgcctg
i rheMac8.chr6             C 0 I 172
s macFas5.chr6             181306830 76 - 181584905 ccaggctgggcaacatggtgaaaccccatctctacgaaaaatacaaaaattagccaggcctggtggtgcttgcctg
i macFas5.chr6             C 0 I 82
s macNem1.NW_012012389v1      316245 76 -   1764207 ccaggctgggcaacatggtgaaaccccatctctacaaaaaatacaaaaattagccaggcctggtggtgcttgcctg
i macNem1.NW_012012389v1   C 0 I 171
s cerAty1.NW_012009470v1      317254 76 -  16742782 ccaggctgggcaacatggtgaaaccccatctctacgaaaaatacaaaaattagccaggcctggtggtgcttgcctg
i cerAty1.NW_012009470v1   C 0 I 69
s chlSab2.chr4              90618339 76 -  91010382 ccagcctgggcaacatggtgaaaccccatctctacgaaaaatacaaaaattagccaggcctggtggtgcttgcctg
i chlSab2.chr4             C 0 I 120
s manLeu1.NW_012110441v1      214906 76 -    438239 ccaggccaggcaacatggtgaaaccccatctctacgaaaaatacaaaaattagccaggcctggtggtgcttgcctg
i manLeu1.NW_012110441v1   C 0 I 173
s colAng1.NW_012118799v1      244717 76 -    514179 ccagcctgggcaacatggtgaaaccccatctctacgaaaaatacaaaaattagccaggcctggtggtgcttgcctg
i colAng1.NW_012118799v1   C 0 I 106
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I

a score=22590.000000
s hg38.chr5_KI270793v1_alt    121165 26 +    126136 GGCAACAGAGCTAGACACTATTTAAG
s panTro5.chr5             181386643 26 - 181907262 GGCAACAGAGCTAGACACTATTTaag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106355 26 - 183735486 GGCAACAGAGCTAGACACTATTTAAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199376 26 +    698298 GGCAACAGAGCTAGACACTATTTAAG
i gorGor5.CYUI01015805v1   C 0 I 2
s macFas5.chr6             181306988 26 - 181584905 ggcaatagagccagacattatttaaa
i macFas5.chr6             I 82 C 0
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e nomLeu3.chr6             120616207  0 - 121039945 C
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618415 120 -  91010382 I
e cerAty1.NW_012009470v1      317330 69 -  16742782 I
e colAng1.NW_012118799v1      244793 106 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e rheMac8.chr6             179573142 172 - 180051392 I

a score=3822.000000
s hg38.chr5_KI270793v1_alt    121191 7 +    126136 AAAAAAa
s panTro5.chr5             181386669 7 - 181907262 aaaaaaa
i panTro5.chr5             C 0 I 4
s panPan2.chr5             183106381 7 - 183735486 AAAAAAA
i panPan2.chr5             C 0 C 0
s macFas5.chr6             181307014 7 - 181584905 aaaaaaa
i macFas5.chr6             C 0 C 0
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e nomLeu3.chr6             120616207 0 - 121039945 C
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618415 120 -  91010382 I
e cerAty1.NW_012009470v1      317330 69 -  16742782 I
e colAng1.NW_012118799v1      244793 106 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e rheMac8.chr6             179573142 172 - 180051392 I
e gorGor5.CYUI01015805v1      199402 2 +    698298 I

a score=546.000000
s hg38.chr5_KI270793v1_alt    121198 2 +    126136 aa
s panPan2.chr5             183106388 2 - 183735486 AA
i panPan2.chr5             C 0 I 17
s macFas5.chr6             181307021 2 - 181584905 aa
i macFas5.chr6             C 0 C 0
e panTro5.chr5             181386676 4 - 181907262 I
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e nomLeu3.chr6             120616207 0 - 121039945 C
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618415 120 -  91010382 I
e cerAty1.NW_012009470v1      317330 69 -  16742782 I
e colAng1.NW_012118799v1      244793 106 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e rheMac8.chr6             179573142 172 - 180051392 I
e gorGor5.CYUI01015805v1      199402 2 +    698298 I

a score=5932.000000
s hg38.chr5_KI270793v1_alt    121200 147 +    126136 acggtgaaaccccgtctctactaaaaatacaaaaaattagctgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccggga-gcggagcttgcagtgagcccagatcgcgccacc-
s nomLeu3.chr6             120616207 129 - 121039945 --ggtgaaaccccgtctttacaaaaaaca-gaaaaattagccaggcctggtggcgtttgcctgtggtcccagccactagggaggttgaggcaagaggatcacttgagcctgggacatggaggctgca-----------------tacct
i nomLeu3.chr6             C 0 C 0
e panTro5.chr5             181386676   4 - 181907262 I
e otoGar3.GL873745           1919236  15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618415 120 -  91010382 I
e cerAty1.NW_012009470v1      317330  69 -  16742782 I
e colAng1.NW_012118799v1      244793 106 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e macFas5.chr6             181307023   0 - 181584905 C
e rheMac8.chr6             179573142 172 - 180051392 I
e gorGor5.CYUI01015805v1      199402   2 +    698298 I
e panPan2.chr5             183106390  17 - 183735486 I

a score=6416.000000
s hg38.chr5_KI270793v1_alt    121347 39 +    126136 gcactccagcctgggcaacagagccagactccgtctcaa-
s nomLeu3.chr6             120616336 36 - 121039945 gcactccagcctgggcaacagagccagacactattt----
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317399 37 -  16742782 gcactccagcctgggcaatagagccagacattatta---a
i cerAty1.NW_012009470v1   I 69 C 0
e panTro5.chr5             181386676  4 - 181907262 I
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618415 120 -  91010382 I
e colAng1.NW_012118799v1      244793 106 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e macFas5.chr6             181307023  0 - 181584905 C
e rheMac8.chr6             179573142 172 - 180051392 I
e gorGor5.CYUI01015805v1      199402  2 +    698298 I
e panPan2.chr5             183106390 17 - 183735486 I

a score=546.000000
s hg38.chr5_KI270793v1_alt    121386 2 +    126136 aa
s gorGor5.CYUI01015805v1      199404 2 +    698298 aa
i gorGor5.CYUI01015805v1   I 2 C 0
s cerAty1.NW_012009470v1      317436 2 -  16742782 aa
i cerAty1.NW_012009470v1   C 0 I 7
e panTro5.chr5             181386676 4 - 181907262 I
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e nomLeu3.chr6             120616372 0 - 121039945 C
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618415 120 -  91010382 I
e colAng1.NW_012118799v1      244793 106 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e macFas5.chr6             181307023 0 - 181584905 C
e rheMac8.chr6             179573142 172 - 180051392 I
e panPan2.chr5             183106390 17 - 183735486 I

a score=1092.000000
s hg38.chr5_KI270793v1_alt    121388 2 +    126136 aa
s gorGor5.CYUI01015805v1      199406 2 +    698298 aa
i gorGor5.CYUI01015805v1   C 0 C 0
s macFas5.chr6             181307023 2 - 181584905 aa
i macFas5.chr6             C 0 I 1
s cerAty1.NW_012009470v1      317445 2 -  16742782 aa
i cerAty1.NW_012009470v1   I 7 I 1
e panTro5.chr5             181386676 4 - 181907262 I
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e nomLeu3.chr6             120616372 0 - 121039945 C
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618415 120 -  91010382 I
e colAng1.NW_012118799v1      244793 106 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e rheMac8.chr6             179573142 172 - 180051392 I
e panPan2.chr5             183106390 17 - 183735486 I

a score=11907.000000
s hg38.chr5_KI270793v1_alt    121390 12 +    126136 aaaaaaaaaaaa
s gorGor5.CYUI01015805v1      199408 12 +    698298 aaaaaaaaaaaa
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616372 11 - 121039945 -aaaaaaaaaaa
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181307026 12 - 181584905 aaaagagagaga
i macFas5.chr6             I 1 C 0
s cerAty1.NW_012009470v1      317448 12 -  16742782 aaaagagagaga
i cerAty1.NW_012009470v1   I 1 C 0
s colAng1.NW_012118799v1      244899 12 -    514179 aaaaaaaaaaaa
i colAng1.NW_012118799v1   I 106 C 0
e panTro5.chr5             181386676  4 - 181907262 I
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618415 120 -  91010382 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e rheMac8.chr6             179573142 172 - 180051392 I
e panPan2.chr5             183106390 17 - 183735486 I

a score=-14.000000
s hg38.chr5_KI270793v1_alt    121402 7 +    126136 aagaaGC
s panTro5.chr5             181386680 7 - 181907262 aagaaga
i panTro5.chr5             I 4 C 0
s panPan2.chr5             183106407 7 - 183735486 aagaaga
i panPan2.chr5             I 17 C 0
s gorGor5.CYUI01015805v1      199420 7 +    698298 aaGCAGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616383 4 - 121039945 ---aaga
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181307038 6 - 181584905 gagaGA-
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317460 6 -  16742782 gagaGA-
i cerAty1.NW_012009470v1   C 0 C 0
s colAng1.NW_012118799v1      244911 6 -    514179 aagaga-
i colAng1.NW_012118799v1   C 0 C 0
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618415 120 -  91010382 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e rheMac8.chr6             179573142 172 - 180051392 I

a score=84029.000000
s hg38.chr5_KI270793v1_alt    121409 28 +    126136 AGCAGCCGGATCCCTCCTTCTTACCTGA
s panTro5.chr5             181386687 28 - 181907262 agaagCCGGATCCCTCCTTCTTACCTGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106414 28 - 183735486 agaagCTGGATCCCTCCTTCTTACCTGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199427 28 +    698298 AGCAGCCGGATCCCGCCTTCTTACCTGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616387 28 - 121039945 aGCAGCTGGATCCCTCCTTCTTACCTGA
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181307044 28 - 181584905 AGCAGCTGGACCCCTCCTTCTGACCTGA
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317466 28 -  16742782 AGCAGCTGGACCCCTCCTTCTGACCTGA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618535 28 -  91010382 aGCAGCTGGATCCCTCCTTCTGACCTGA
i chlSab2.chr4             I 120 C 0
s colAng1.NW_012118799v1      244917 28 -    514179 aGCAGCTGGATCCCTCCTTCTGACCTGA
i colAng1.NW_012118799v1   C 0 C 0
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e rheMac8.chr6             179573142 172 - 180051392 I

a score=5600.000000
s hg38.chr5_KI270793v1_alt    121437 2 +    126136 CC
s panTro5.chr5             181386715 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106442 2 - 183735486 CC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199455 2 +    698298 CC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616415 2 - 121039945 CC
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317494 2 -  16742782 CC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90618563 2 -  91010382 CC
i chlSab2.chr4             C 0 I 9
s colAng1.NW_012118799v1      244945 2 -    514179 CC
i colAng1.NW_012118799v1   C 0 C 0
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e macFas5.chr6             181307072 0 - 181584905 C
e rheMac8.chr6             179573142 172 - 180051392 I

a score=2100.000000
s hg38.chr5_KI270793v1_alt    121439 1 +    126136 C
s panTro5.chr5             181386717 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106444 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199457 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616417 1 - 121039945 C
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317496 1 -  16742782 C
i cerAty1.NW_012009470v1   C 0 C 0
s colAng1.NW_012118799v1      244947 1 -    514179 C
i colAng1.NW_012118799v1   C 0 I 3
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618565 9 -  91010382 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e macFas5.chr6             181307072 0 - 181584905 C
e rheMac8.chr6             179573142 172 - 180051392 I

a score=2730.000000
s hg38.chr5_KI270793v1_alt    121440 2 +    126136 AA
s panTro5.chr5             181386718 2 - 181907262 AA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106445 2 - 183735486 AA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199458 2 +    698298 AA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616418 2 - 121039945 AA
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      317497 2 -  16742782 AA
i cerAty1.NW_012009470v1   C 0 C 0
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618565 9 -  91010382 I
e colAng1.NW_012118799v1      244948 3 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e macFas5.chr6             181307072 0 - 181584905 C
e rheMac8.chr6             179573142 172 - 180051392 I

a score=155001.000000
s hg38.chr5_KI270793v1_alt    121442 219 +    126136 TAACtttatttatttatttatttatttatttatttattta--tttatttat---tttt--tgagac--agtatcactctgtctcccaggctggagtgcagtggcccaatctcgatctcggctcaccacaatctccacctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggtgtctgccaccactcctggctaatttttgtatttt
s panTro5.chr5             181386720 191 - 181907262 TAAC----------------------------tttattta--tttatttat---tttt--tgagac--agtatcactctgtctcccaggctggagtgcagtggcccaatctcgatctcggctcaccacaatctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggactacaggtgtctgccaccactcctggctaatttttgcatttt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106447 191 - 183735486 TAAC----------------------------tttattta--tttatttat---tttt--tgagac--agtatcactctgtctcccaggctggagtgcagtggcccaatctcgatctcggctcaccacaatctccgcctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggactacaggtgtctgccaccactcctggctaatttttgcatttt
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199460 212 +    698298 TAACGttatttatttattattta---------tttatcta--tttatttatatatttt--tgagac--agtatcgctctgtctcccaggctggagtgcagtgg-ccagtctcgatctcggctcaccacaatctccgcttcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggactacaggtgtctgccaccactcctggctaatttttgtatttt
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616420 209 - 121039945 TAACtttatttattta----------------tttatttatttttatttat---ttTTCAtgagacagagtatcgctctgtctcccaggctagagtgcagtggtccaatatcgatctcggctcaccacagcctccacctcccggattcaagcaattctcctgcctcagcctcccaagtagctgggactacaggagtctgccaccatgcccagctaatttttgtatttt
i nomLeu3.chr6             C 0 I 13
e otoGar3.GL873745           1919236  15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618565   9 -  91010382 I
e cerAty1.NW_012009470v1      317499   0 -  16742782 C
e colAng1.NW_012118799v1      244948   3 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e macFas5.chr6             181307072   0 - 181584905 C
e rheMac8.chr6             179573142 172 - 180051392 I

a score=4763.000000
s hg38.chr5_KI270793v1_alt    121661 18 +    126136 gtattttttttttgtttt
s panTro5.chr5             181386911 14 - 181907262 gtatttttttttt----t
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106638 13 - 183735486 gtattttttttt-----t
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199672 13 +    698298 gtattttttttt-----t
i gorGor5.CYUI01015805v1   C 0 C 0
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e nomLeu3.chr6             120616629 13 - 121039945 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618565  9 -  91010382 I
e cerAty1.NW_012009470v1      317499  0 -  16742782 C
e colAng1.NW_012118799v1      244948  3 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e macFas5.chr6             181307072  0 - 181584905 C
e rheMac8.chr6             179573142 172 - 180051392 I

a score=91397.000000
s hg38.chr5_KI270793v1_alt    121679 106 +    126136 gtttctccatattggccaggctggtctcgatctcatgaccttgtgatccacccaccttggcctcccaaagtgctgagattacaggcgtgagccaccgcgcccggcc
s panTro5.chr5             181386925 106 - 181907262 gtttcaccatattggccaggctggtctcgatctcctgaccttgtgatccacccaccttggcctcccaaagtgctgagattacaggcgtgagccaccgcgcccggcc
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106651 106 - 183735486 gtttcactatattggccaggctggtctcgatctcctgaccttgtgatccacccaccttggcctcccaaagtgctgagattacaggcgtgagccaccgcgcccggcc
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199685 105 +    698298 ttctctccatattggccaggctggtctcgatctcctgaccttgtgatccacccaccttggcctcccaaagtgctgggattacaggcgtgagccgccgcgcccgg-c
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616642 106 - 121039945 gtttcaccatattagccaggttggtcttgatctcctgaccttgtgatccaccggccttggcctcccaaagtgctgggattacaggcatgagccaccgcgcccggcc
i nomLeu3.chr6             I 13 C 0
e otoGar3.GL873745           1919236  15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618565   9 -  91010382 I
e cerAty1.NW_012009470v1      317499   0 -  16742782 C
e colAng1.NW_012118799v1      244948   3 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e macFas5.chr6             181307072   0 - 181584905 C
e rheMac8.chr6             179573142 172 - 180051392 I

a score=430.000000
s hg38.chr5_KI270793v1_alt    121785 1 +    126136 C
s panTro5.chr5             181387031 1 - 181907262 C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106757 1 - 183735486 C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199790 1 +    698298 c
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616748 1 - 121039945 A
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181307072 1 - 181584905 C
i macFas5.chr6             C 0 C 0
e otoGar3.GL873745           1919236 15 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618565 9 -  91010382 I
e cerAty1.NW_012009470v1      317499 0 -  16742782 C
e colAng1.NW_012118799v1      244948 3 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e rheMac8.chr6             179573142 172 - 180051392 I

a score=6275.000000
s hg38.chr5_KI270793v1_alt    121786 5 +    126136 CCAAT
s panTro5.chr5             181387032 5 - 181907262 CCAAT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106758 5 - 183735486 CCAAT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199791 5 +    698298 CCAAT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616749 5 - 121039945 CCAAT
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181307073 5 - 181584905 CCGAA
i macFas5.chr6             C 0 C 0
s otoGar3.GL873745           1919251 5 -   2165740 CTAAA
i otoGar3.GL873745         I 15 C 0
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      214982 173 -    438239 I
e chlSab2.chr4              90618565 9 -  91010382 I
e cerAty1.NW_012009470v1      317499 0 -  16742782 C
e colAng1.NW_012118799v1      244948 3 -    514179 I
e macNem1.NW_012012389v1      316321 171 -   1764207 I
e rheMac8.chr6             179573142 172 - 180051392 I

a score=3356072.000000
s hg38.chr5_KI270793v1_alt    121791 611 +    126136  
s panTro5.chr5             181387037 611 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183106763 611 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      199796 606 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120616754 611 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179573314 636 - 180051392  
i rheMac8.chr6             I 172 C 0
s macFas5.chr6             181307078 636 - 181584905  
i macFas5.chr6             C 0 I 29
s macNem1.NW_012012389v1      316492 636 -   1764207  
i macNem1.NW_012012389v1   I 171 I 29
s cerAty1.NW_012009470v1      317499 632 -  16742782  
i cerAty1.NW_012009470v1   C 0 I 29
s chlSab2.chr4              90618574 582 -  91010382  
i chlSab2.chr4             I 9 I 29
s manLeu1.NW_012110441v1      215155 631 -    438239  
i manLeu1.NW_012110441v1   I 173 I 29
s colAng1.NW_012118799v1      244951 631 -    514179  
i colAng1.NW_012118799v1   I 3 I 21
s otoGar3.GL873745           1919256 465 -   2165740  
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I

a score=4877.000000
s hg38.chr5_KI270793v1_alt    122402 5 +    126136 CCAGA
s panTro5.chr5             181387648 5 - 181907262 GCAGA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107374 5 - 183735486 GCAGA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      200402 5 +    698298 CCAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120617365 5 - 121039945 CCAGA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179573950 3 - 180051392 --AGT
i rheMac8.chr6             C 0 I 26
s otoGar3.GL873745           1919721 5 -   2165740 CCAGG
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I
e manLeu1.NW_012110441v1      215786 29 -    438239 I
e chlSab2.chr4              90619156 29 -  91010382 I
e cerAty1.NW_012009470v1      318131 29 -  16742782 I
e colAng1.NW_012118799v1      245582 21 -    514179 I
e macNem1.NW_012012389v1      317128 29 -   1764207 I
e macFas5.chr6             181307714 29 - 181584905 I

a score=1418387.000000
s hg38.chr5_KI270793v1_alt    122407 273 +    126136 GCTCCTTGATAGTG---GCGGCTGTGGCCACGTGAGCAGGCACAGGTGCAGTTAACA---GGCTTGGGAAGCTGCC--CTCACCGTCTACCTGCAC-AAAAGAATT-CCCGGAGAGCACAGCCTCACTGGAGATCCTCTCCTGAG---GGATAAAGGTCAGCGAGACCTGAAGTTGCTCCCCTGCAGGGCATTTGCAAACTCCTCAAAGCCTTTCAGAGGCTCCACCTGCACCCCAACCCTAACCCCACCCCAAAGTGAGGGGGCCT---CATGCCTTTGCCTCAGTGG
s panTro5.chr5             181387653 273 - 181907262 GCTCCTTGATAGTG---GTGGCCGTGGCCACGTGAGCAGGCACAGGTGCAGTTAACA---GGCTTGGGAAGCTGCC--CTCACCGTCTACCTGCAC-AAAAGAATT-CCCGGAGAGCACAGCCTCACTGGAGATCCTCTCCTGAG---GGATAAAGGTCAGCGAGACCCGAAGTTGCTCCCCTGCAGGACATTTGCAAACTCCTCAAAGCCTTTCAGAGGCTCCACCTGCACCCCAACCCCAACCCCACCCCAAAGTGAGGGGGCCT---CATGCCTTTGCCTCAGTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107379 273 - 183735486 GCTCCTTGATAGTG---GCGGCCGTGGCCACGTGAGCAGGCACAGGTGCAGTTAACA---GGCTTGGGAAGCTGCC--CTCACCGTCTACCTGCAC-AAAAGAATT-CCCGGAGAGCACAGCCTCACTGGAGATCCTCTCCTGAG---GGATAAAGGTCAGCAAGACCTGAAGTTGCTCCCCTGCAGGGCATTTGCAAACTCCTCAAAGCCTTTCAGAGGCTCCACCTGCACCCCAACCCCAACCCCACCCCAAAGTGAGGGGGCCT---CATGCCTTTGCCTCAGTGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      200407 272 +    698298 GCTCCTTGATGGTG---GCGGCCGTGGCCACGTGAGCAGGCACAGGTGCAGTTAACA---GGCTTGGGAAGCTGCC--CTCACCGTCTACCTGCAC-CAAAGAATT-CCTGGAGAGCACAGCCTCACTGGAGATCCTCTCCTGAG---GGATAAAGGTCAGCGAGACCCGAAGTTGCTCCCCTGCAGGGCATTTGCAAACTCCTCAAAGCCTTTCAGAGGCTCCACCTGCACCCCAACCCCAACCCCACCCCAAAGTGAGGGGGCCT---TAT-CCTTTGCCTCAGTGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120617370 275 - 121039945 GCTCCTTGATGGTGGTAGTGGCTGTGGCCACGTGAGCAGGCGCAGGTGCAGTTAACA---GGCTTGGGAAGCTGCC--CACGCTGTCCGCCTGCAC-AAAAGAATT-CCCGGAGAGCACAGCCTCACTGGAGATCCTCTCCTGA----GGATAAAGGTCAGCAAGACCCGAACTTGCTCCCCTGCAGGGCATTTGCAAACTCCTCAAAGCCTTTCAGAGGCTCCACCTGTACCCCAACCCCAACCCCACCCCAGAGTGAGGGGGCCT---CATGCCTTTGCCTCAGTGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179573979 258 - 180051392 GCTCCCTGATAGTGGTGGTGTCCGTGGCCACGTGA------------GCAGTTAGCA---GGCTT-GGAACCTGCC--CACACAGTCGACCTGCAC-AAAAGAATTTCCCGGAGAGCACAGCCCCGCTGGAGTTCCTCTCCTAAG---GGAGAAAGGTCAGCAAGACCCGAACTTGCCCCCCTGCAGGGCATTTGCAAACTCTTCGAAGCCTTTCAGAGGCTCCACCTGCACCCC------AACCCCACCCCAAAGTGAGGAGGCCT---CATGCCTTTGCCTCAGTGG
i rheMac8.chr6             I 26 C 0
s macFas5.chr6             181307743 258 - 181584905 GCTCCCTGATAGTGGTGGTGTCCGTGGCCACGTGA------------GCAGTTAGCA---GGCTT-GGAACCTGCC--CACACAGTCAACCTGCAC-AAAAGAATTTCCCGGAGAGCACAGCCCCGCTGGAGTTCCTCTCCTAAG---GGAGAAAGGTCAGCAAGACCCGAACTTGCCCCCCTGCAGGGCATTTGCAAACTCTTCGAAGCCTTTCAGAGGCTCCACCTGCACCCC------AACCCCACCCCAAAGTGAGGAGGCCT---CATGCCTTTGCCTCAGTGG
i macFas5.chr6             I 29 C 0
s macNem1.NW_012012389v1      317157 258 -   1764207 GCTCCCTGATAGTGGTGGTGTCCGTGGCCACGTGA------------GCAGTTAGCA---GGCTT-GGAACCTGCC--CACACAGTCGACCTGCAC-AAAAGAATTTCCCGGAGAGCACAGCCCCGCTGGAGTTCCTCTCCTAAG---GGAGAAAGGTCAGCAAGACCCGAACTTGCCCCCCTGCAGGGCATTTGCAAACTCTTCGAAGCCTTTCAGAGGCTCCACCTGCACCCC------AGCCCCACCCCAAAGTGAGGAGGCCT---CATGCCTTTGCCTCAGTGG
i macNem1.NW_012012389v1   I 29 C 0
s cerAty1.NW_012009470v1      318160 259 -  16742782 GCTCCCTGATAGTGGTGGTGTCCGTGGCCACGTGA------------GCAGTTAGCA---GGCTT-GGAACCTGCC--CACACAGTCGACTTGCACAAAAAAAATTCCCCGGAGAGCACAGCCCCGCTGGAGTTCCTCTCCTGAG---GGAGAAAGGTCAGCAAGACCCGAACTTGCCCCCCTGCAGGGCATTTGCAAACTCTTCGAAGCCTTTCAGAGGCTCCACCTGCACCCC------AACCCCACCCCAAAGTGAGGAGGCCT---CATGCCTTTGCCTCAGTGG
i cerAty1.NW_012009470v1   I 29 C 0
s chlSab2.chr4              90619185 260 -  91010382 GCTCCCTCATAGTGGTGGTGTCCGTGGCCACATGA------------GCAGTTAGCA---GGCTT-GGAACCTGCTCACACACAGCCGACCTGTAC-AAAATAATTCCCCGGAGAGCACAGCCTCGCTGGAGTTCCTCTCCTGAG---GGATAAAGGTCAGCAAGACCCGAACTTGCTCCCCTGCAGGGCATTTGCAAACTCTTTGAAGCCTTTCAGAGGCTCCACCTGCACCCC------AACCCCACCCCAAAGTGAGGAGGCCT---CATGCCTTTGCCTCAGTGG
i chlSab2.chr4             I 29 C 0
s manLeu1.NW_012110441v1      215815 259 -    438239 GCTCCCTGATAGTGGTGGTGTCCGTGGCCACGTGA------------GCAGTTAGCA---GGCTT-GGAACCTGCC--CACACAGTCGACCTGCACAAAAAAAATTCCCCGGAGAGCACAGCCCCGCTGGAGTTCCTCTCCTGAG---GGAGAAAGGTCAGCAAGACCCGAACTTGCCCCCCTGCAGGGCATTTGCAAACTCTTCGAAGCCTTTCAGAGGCTCCACCTGCACCCC------AACCCCACCCCAAAGTGAGGAGGCCT---CATGCCTTTGCCTCAGTGG
i manLeu1.NW_012110441v1   I 29 C 0
s colAng1.NW_012118799v1      245603 258 -    514179 GCTCCCTGATAGTGGTGGCGTCTGTGGCCACGTGA------------GCAGTGAGCA---GGCTT-GGAACCTGCC--CACACAGTCGACCTGCAC-AAAAGAATTCCCCAGAGAGCACAGCCTCGCTGGAGTTCCTCTCCCGAG---GGATAAAGGTCAGCAAGACCCGAACTTGCTCCCCTGCAGGGCATTTGCAAACTCCTCGCAGCCTTTCAGAGGCTCCACCTGCACCCC------AACCCCGCCCCAAAGTGAGGAGGCCT---CATGCCTTTGCCTCAGTGG
i colAng1.NW_012118799v1   I 21 C 0
s otoGar3.GL873745           1919726 244 -   2165740 AACTTCTGATAGTGGTGGCTTATGT-GCCACGTGGATAGGCACAGGCTGGGTTAACAATGGCCTTGGGACATTGCC--TACACACTTTATCTGCAC-AAAAGAA---CTCAGAGAAAACAGCCCTGCTGGA---CTTTTCACAGGACAGGATGAAGGTCGATGGCATCC-AAGCCGCTGCCCTGTCATCTATCT--------------GCCCTTTAGAGGCCCAACA--------------AGCCCCACCC------AAGGAGGCATATCCATGTCAATCTCTCAGTGG
i otoGar3.GL873745         C 0 I 29
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I

a score=148301.000000
s hg38.chr5_KI270793v1_alt    122680 26 +    126136 TTCACATTAATTTCATCTCCGTGGTA
s panTro5.chr5             181387926 26 - 181907262 TTCACATTAATTTCATCTCCGTGGTA
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107652 26 - 183735486 TTCACATTAATTTCATCTCCGTGGTA
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      200679 26 +    698298 TTCACATTAATTTCATCTCCGTGGTA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120617645 26 - 121039945 TTCACATTAATTTCATCTCCGTGGTA
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574237 26 - 180051392 TTCACATTCATTTCATCTCCATGGTA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308001 26 - 181584905 TTCACATTCATTTCATCTCCATGGTA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      317415 26 -   1764207 TTCACATTCATTTCATCTCCATGGTA
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      318419 26 -  16742782 TTCACATTCATTTCATCTCCATGGTA
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619445 26 -  91010382 TTCATATTCATTTCATCTCCATGGTA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      216074 26 -    438239 TTCACATTCATTTCATCTCCATGGTA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      245861 26 -    514179 TTCACATTCATTTCATCTCCATGGTA
i colAng1.NW_012118799v1   C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203905862 1007 + 204313951 I

a score=46649.000000
s hg38.chr5_KI270793v1_alt    122706 8 +    126136 GTCACTCC
s panTro5.chr5             181387952 8 - 181907262 GTAACTCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107678 8 - 183735486 GTAACTCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      200705 7 +    698298 GTCACT-C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120617671 8 - 121039945 GTCACACC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574263 8 - 180051392 GTCACTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308027 8 - 181584905 GTCACTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      317441 8 -   1764207 GTCACTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      318445 8 -  16742782 GTCACTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619471 8 -  91010382 GTCACTCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      216100 8 -    438239 GTCACTCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      245887 8 -    514179 GTCACTCC
i colAng1.NW_012118799v1   C 0 I 31
s calJac3.chr2             203906869 8 + 204313951 gtcactcc
i calJac3.chr2             I 1007 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M

a score=302212.000000
s hg38.chr5_KI270793v1_alt    122714 68 +    126136 ----CCTCCCAACATGGCCACTTTCCCCA-CCCCCACAATGGTCACTCTCCCCCC-----ACATGGTCACTCCCCACC-
s panTro5.chr5             181387960 68 - 181907262 ----CCTCCCAACATGGCCACTCTCCCCA-CCCCCACAATGGTCACTCTCCCCCC-----ACATGGTCACTCCCCACC-
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107686 68 - 183735486 ----CCTCCCAACATGGCCACTCTCCCCA-CCCCCACAATGGTCACTCTCCCCCC-----ACATGGTcactccccacc-
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      200712 69 +    698298 ----CCTCCCAACATGGCCACTCTCCCCACCCCCCACAATGGTCACTCTCTCCCC-----ACATGGTCACTCCCCACC-
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120617679 65 - 121039945 ----CCTCGCAACACGGCCACTCT--CCA-CCCCCACAACGGTCACTCTCCCCGC------CATGGTCACTCCCCACC-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574271 73 - 180051392 ----CCTCCCAACACGGCCACTCTCCCCACCCCCCATAATGGTCACTCTCTTCCCC-CCACCATGGTCGCTCCCCACC-
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308035 73 - 181584905 ----CCTCCCAACACGGCCACTCTCCCCACCCCCCATAATGGTCACTCTCTTCCCC-CCACCATGGTCGCTCCCCACC-
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      317449 73 -   1764207 ----CCTCCCAACACGGCCACTCTCCCCACCCCCCATAATGGTCACTCTCTTCCTC-CCACCATGGTCGCTCCCCACC-
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      318453 73 -  16742782 ----CCTCCCAACACGGCCACTCTCCCCACCCCCCATAATGGTCACTCTCTTCCCC-CCCCCATGGTCTCTCCCCCCC-
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619479 73 -  91010382 ----CCTCCCAACACGGCCACTCTCCCCACCGCCCATAATGGTCACTCTCTTCCCC-CCACCATGGTCACTCCCCACC-
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      216108 73 -    438239 ----CCTCCCAACACGTCCACTCTCCCCACCCCCCATAATGGTCACTCTCTTCCCC-CCACCATGGTCGCTCCCCACC-
i manLeu1.NW_012110441v1   C 0 I 187
s calJac3.chr2             203906877 79 + 204313951 cccaccagcccccacggtcactccccccaccagcccccacggtcactcccccaccagcccccacggtcactccccccac
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e colAng1.NW_012118799v1      245895 31 -    514179 I

a score=8580.000000
s hg38.chr5_KI270793v1_alt    122782 6 +    126136 CACCCC
s panTro5.chr5             181388028 6 - 181907262 CACCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107754 6 - 183735486 cacccc
i panPan2.chr5             C 0 I 15
s gorGor5.CYUI01015805v1      200781 6 +    698298 CACCCC
i gorGor5.CYUI01015805v1   C 0 I 58
s nomLeu3.chr6             120617744 3 - 121039945 CCC---
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574344 4 - 180051392 --TCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308108 4 - 181584905 --TCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      317522 4 -   1764207 --TCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      318526 4 -  16742782 --TCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619552 4 -  91010382 --TCCC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203906956 6 + 204313951 cagccc
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e colAng1.NW_012118799v1      245895 31 -    514179 I

a score=96415.000000
s hg38.chr5_KI270793v1_alt    122788 54 +    126136 CCACAGCCACTCTCCCC-A-------CCTTGGTCACTCCC---------CAC-----CCCCC--CACAGTCACTCTCC
s panTro5.chr5             181388034 49 - 181907262 CCACA-TCACT-TCCCC---------CCGTGGTCACTCCC---------GAC-----CACCC----CAGTCACTCTGC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      200845 55 +    698298 -CCCAGTCACTCTCCCC-T-------CCGTGGTCACTCCC---------CCA-----CCCCCGCCACAGTCACTCTCC
i gorGor5.CYUI01015805v1   I 58 I 174
s nomLeu3.chr6             120617747 34 - 121039945 CCACAGTCACTTTCCCCCA-------CAATGGTCACTCTC---------C----------------------------
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574348 51 - 180051392 CCAAAGTGACTCTCCCC-G-------CCATGGTCGCTCCC---------CAC-----CCCCC-----AGTCGCTCTCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308112 51 - 181584905 CCAAAGTGACTCTCCCC-G-------CCATGGTCGCTCCC---------CAC-----CCCCC-----AGTCGCTCTCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      317526 51 -   1764207 CCAAAGTGACTCTCCCC-G-------CCATGGTCGCTCCC---------CAC-----CCCCC-----AGTCACTCTCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      318530 51 -  16742782 CCAAAGTGACTCTCCCC-G-------CCATGGTTGCTCCC---------CAC-----CCCCC-----AGTCACTCTCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619556 60 -  91010382 CCAAAGTGACTCTCCCC-G-------CCATGGTCACTCCCTCCTCCCCACCC-----CCCCC-----AGTCAGTCTCC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203906962 65 + 204313951 ccacggtcactcccccc-accagcccccacggtcactccc---------cccgccagccccc---acggtcactcccc
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e colAng1.NW_012118799v1      245895 31 -    514179 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=1888.000000
s hg38.chr5_KI270793v1_alt    122842 1 +    126136 C
s panTro5.chr5             181388083 1 - 181907262 A
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201074 1 +    698298 C
i gorGor5.CYUI01015805v1   I 174 C 0
s rheMac8.chr6             179574399 1 - 180051392 C
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308163 1 - 181584905 C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      317577 1 -   1764207 C
i macNem1.NW_012012389v1   C 0 I 39
s cerAty1.NW_012009470v1      318581 1 -  16742782 C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619616 1 -  91010382 C
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203907027 1 + 204313951 c
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e nomLeu3.chr6             120617781 0 - 121039945 C
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e colAng1.NW_012118799v1      245895 31 -    514179 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=84682.000000
s hg38.chr5_KI270793v1_alt    122843 58 +    126136 -----CTCTCCGTGGTCACTCTCCACCCCA--CCCCCCAGTCA--CTCTCCC------CCCGTGGTCACTCCC
s panTro5.chr5             181388084 54 - 181907262 -----C-CCCCGTGGT-ACTCCCCACCTCA--CTCACGAGT----CTCTCCC------TCCGTGGTCACTCCC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201075 59 +    698298 -----CCCTCCGTGGTCACTCCCCACCCCA-CCCCCCCAGTCA--CTCTCCC------CCCGTGGTCACTCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120617781 58 - 121039945 ------CCCCCATGGTCACTCCCCACCCC---CCTCACAGTCACTCTCCCCC------CCCATGGTCACTCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574400 53 - 180051392 -------TGCCATGGTCACTCCCCACTCC---CC---CAGTCA--TTCTCCC-----GCCCATGGCCACTCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308164 53 - 181584905 -------TGCCATGGTCACTCCCCACCCC---CC---CAGTCA--TTCTCCC-----GCCCATGGCCACTCCC
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      318582 53 -  16742782 -------TGCCATGGTCACTCCCCACCCC---CC---CAGTCA--TTCTCCC-----GCCCATGGCCACTCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619617 54 -  91010382 -------CACCATGGTCACTCCCCACACC---CCCCACAGTCA--CTATCCC-----CCCCA--GTCACTCTC
i chlSab2.chr4             C 0 C 0
s calJac3.chr2             203907028 71 + 204313951 ggccagcccccacggtcactccccccaccagcccccacggtca--ctcccccccatcccccacggtcactccc
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e colAng1.NW_012118799v1      245895 31 -    514179 I
e macNem1.NW_012012389v1      317578 39 -   1764207 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=10868.000000
s hg38.chr5_KI270793v1_alt    122901  9 +    126136 -----CACCC-CCCC
s panTro5.chr5             181388138 10 - 181907262 -----CACCCAACCC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201134  9 +    698298 -----CACCC-CCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120617839  9 - 121039945 -----CACCC-CCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574453  9 - 180051392 -----CACAC-CCCC
i rheMac8.chr6             C 0 I 1
s macFas5.chr6             181308217  9 - 181584905 -----CACAC-CCCC
i macFas5.chr6             C 0 I 1
s cerAty1.NW_012009470v1      318635  9 -  16742782 -----CACAC-CCCC
i cerAty1.NW_012009470v1   C 0 I 28
s calJac3.chr2             203907099 13 + 204313951 cccaccagcc-ccc-
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e colAng1.NW_012118799v1      245895 31 -    514179 I
e macNem1.NW_012012389v1      317578 39 -   1764207 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=19980.000000
s hg38.chr5_KI270793v1_alt    122910 29 +    126136 ACAGTCACTCTCC-------CCT-CTGTGGTCACT-CT
s panTro5.chr5             181388148 28 - 181907262 ACAGTC-CTCTCC-------CA--CGGTGGTCACTCCT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201143 29 +    698298 ACAGTCACTCTCC-------CCT-CCGTGGTCACT-CC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120617848 30 - 121039945 ACAGTCACTTTCC-------CCCACAATGGTCACT-CT
i nomLeu3.chr6             C 0 I 172
s rheMac8.chr6             179574463 27 - 180051392 ACTGGCACTATCC-------CCC-CCA--GTCACT-CT
i rheMac8.chr6             I 1 C 0
s macFas5.chr6             181308227 27 - 181584905 ACTGGCACTATCC-------CCC-CCA--GTCACT-CT
i macFas5.chr6             I 1 C 0
s calJac3.chr2             203907112 36 + 204313951 acggtcactcccCCGATCAGCCA-CCACGGTcact-cc
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e colAng1.NW_012118799v1      245895 31 -    514179 I
e macNem1.NW_012012389v1      317578 39 -   1764207 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=-5527.000000
s hg38.chr5_KI270793v1_alt    122939 4 +    126136 --CCAC
s panTro5.chr5             181388176 4 - 181907262 --CCAT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201172 4 +    698298 --CCAC
i gorGor5.CYUI01015805v1   C 0 I 221
s nomLeu3.chr6             120618050 4 - 121039945 --CCAC
i nomLeu3.chr6             I 172 I 58
s rheMac8.chr6             179574490 1 - 180051392 ---C--
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308254 1 - 181584905 ---C--
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203907148 4 + 204313951 cccc--
i calJac3.chr2             C 0 I 5
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671 0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e colAng1.NW_012118799v1      245895 31 -    514179 I
e macNem1.NW_012012389v1      317578 39 -   1764207 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=25998.000000
s hg38.chr5_KI270793v1_alt    122943 23 +    126136 CCCCCACAGTCACTCT----CCCCCTT----
s panTro5.chr5             181388180 21 - 181907262 CCCCCACAGTCACTTC----CCCCC------
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201397 27 +    698298 CCCCCACAGTCACTCTCCTACCCCCTC----
i gorGor5.CYUI01015805v1   I 221 C 0
s nomLeu3.chr6             120618112 23 - 121039945 CCCCCACAGTCACTCT----CCCCCCC----
i nomLeu3.chr6             I 58 C 0
s rheMac8.chr6             179574491 21 - 180051392 CCCCCACAGTCACTCT----CCCCA------
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308255 21 - 181584905 CCCCAACAGTCACTCT----CCCCA------
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203907157 27 + 204313951 cccccacggtcactcc----ccccccagccc
i calJac3.chr2             I 5 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e colAng1.NW_012118799v1      245895 31 -    514179 I
e macNem1.NW_012012389v1      317578 39 -   1764207 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=29134.000000
s hg38.chr5_KI270793v1_alt    122966 12 +    126136 CCATGGTCACTC
s panTro5.chr5             181388201 12 - 181907262 CAATGGTCACTC
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201424 12 +    698298 CCGTGGTCACTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618135 12 - 121039945 CCATGGTCACTC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574512 12 - 180051392 CCATGGTCACTC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308276 12 - 181584905 CCATGGTCACTC
i macFas5.chr6             C 0 T 124
s colAng1.NW_012118799v1      245926 12 -    514179 CCATGGTCACTC
i colAng1.NW_012118799v1   I 31 C 0
s calJac3.chr2             203907184 12 + 204313951 ccacggtcactc
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e macNem1.NW_012012389v1      317578 39 -   1764207 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=8218.000000
s hg38.chr5_KI270793v1_alt    122978  8 +    126136 CCCACCCC----
s panTro5.chr5             181388213  8 - 181907262 CCCATTCC----
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201436  8 +    698298 CCCACCCC----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618147  8 - 121039945 CCCACCCC----
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574524  8 - 180051392 CCCGCCCC----
i rheMac8.chr6             C 0 I 12
s colAng1.NW_012118799v1      245938  8 -    514179 ACCACCCC----
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203907196 11 + 204313951 -cccccccagcc
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e macNem1.NW_012012389v1      317578 39 -   1764207 I
e macFas5.chr6             181308288 124 - 181584905 T
e panPan2.chr5             183107760 15 - 183735486 I

a score=16662.000000
s hg38.chr5_KI270793v1_alt    122986 35 +    126136 CCC-ACAGTCACTCTCA-------CCTCCGTGGTCAC---TCCCCA
s panTro5.chr5             181388221 14 - 181907262 CCCGACAGTCACTC--------------------------------
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201444 36 +    698298 CCC-ACAGTCACTCTCC-------CCTCCGTGGTCAC--GTCCCCA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618155 38 - 121039945 CCC-ACAGTCACTTTCC-------CCCACATGGTCACTCTCCCCCA
i nomLeu3.chr6             C 0 C 0
s colAng1.NW_012118799v1      245946 35 -    514179 CCC-ACAGTCACTCTCC-------CCCCCATGGTCAC---TCCCCA
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203907207 42 + 204313951 ccc-acggtcactccccccaccagcccccacggtcac---tccccc
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e macNem1.NW_012012389v1      317578 39 -   1764207 I
e macFas5.chr6             181308288 124 - 181584905 T
e rheMac8.chr6             179574532 12 - 180051392 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=1500.000000
s hg38.chr5_KI270793v1_alt    123021 1 +    126136 C
s gorGor5.CYUI01015805v1      201480 1 +    698298 C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618193 1 - 121039945 C
i nomLeu3.chr6             C 0 I 7
s macNem1.NW_012012389v1      317617 1 -   1764207 C
i macNem1.NW_012012389v1   I 39 C 0
s colAng1.NW_012118799v1      245981 1 -    514179 C
i colAng1.NW_012118799v1   C 0 M 3143
s calJac3.chr2             203907249 1 + 204313951 c
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181388235 0 - 181907262 C
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671 0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e macFas5.chr6             181308288 124 - 181584905 T
e rheMac8.chr6             179574532 12 - 180051392 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=37117.000000
s hg38.chr5_KI270793v1_alt    123022  73 +    126136 -CCCACCCCCCCA----------------GTCACTCTCCCC--------CCGTGGTCACTCCCCACCCCC------------------------------------CCACAGTCACTCTC-C-------CCTCTGTGGTCAC
s panTro5.chr5             181388235  56 - 181907262 ---------------------------------CTCCCCTT--------CCGTGGTCACTGTCCA--CCC------------------------------------CCACAGTCACTCTCTC-------CCCCCGTGGTCAC
i panTro5.chr5             C 0 I 53
s gorGor5.CYUI01015805v1      201481 104 +    698298 -CTCACCCCCCCACAGTCACTACCCTTCCGTCACTCCCCCC--------CCGTGGTCACTCCCCACCCCCCCC---------TCATTCCCCCCA------------CCACAGTCACTCTC-C-------CCCCCGTGGTCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618201  76 - 121039945 -CTCCCCCCCCTACA--------------GTCACTCTCCCT-------GCCATGGTCACTCCCCACCCCC------------------------------------CCACAGTCACTTTC-C-------CCCACATGGTCAC
i nomLeu3.chr6             I 7 I 18
s macNem1.NW_012012389v1      317618 110 -   1764207 -CCCACCCCCCCA----------------GTCATTCTCCCG-------CCCATGGCCACTCCCCACACCCCCCCACCTGGCACTATCCCCCCCAGTCACTCTCCCCCCACAGTCACTCTC-C-------CCACCATGGTCAC
i macNem1.NW_012012389v1   C 0 C 0
s calJac3.chr2             203907250  93 + 204313951 gccagcccccacg----------------gtcactcccccggccagcccccacggtcactccccccgccagccc--------------------------------ccacggtcactccc-ccgatcagcccccacggtcac
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970  29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671   0 -  91010382 C
e cerAty1.NW_012009470v1      318644  28 -  16742782 I
e colAng1.NW_012118799v1      245982 3143 -    514179 M
e macFas5.chr6             181308288 124 - 181584905 T
e rheMac8.chr6             179574532  12 - 180051392 I
e panPan2.chr5             183107760  15 - 183735486 I

a score=2039.000000
s hg38.chr5_KI270793v1_alt    123095 10 +    126136 TCTCCACCC--C----
s gorGor5.CYUI01015805v1      201585 10 +    698298 TCCCCACCC--C----
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618295 12 - 121039945 TCCCCTCCCCGC----
i nomLeu3.chr6             I 18 C 0
s macNem1.NW_012012389v1      317728 10 -   1764207 TCCCCGCCC--C----
i macNem1.NW_012012389v1   C 0 I 12
s calJac3.chr2             203907343 14 + 204313951 tccacccac--cagcc
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181388291 53 - 181907262 I
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e colAng1.NW_012118799v1      245982 3143 -    514179 M
e macFas5.chr6             181308288 124 - 181584905 T
e rheMac8.chr6             179574532 12 - 180051392 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=17985.000000
s hg38.chr5_KI270793v1_alt    123105  81 +    126136 -CCAACAGTCACTC--TCCC-----CCTTCCATGGTCACT--CCCCACC--CTCCTACAGTC-ACTCTTC------ACC-CCGCGGTCACTCCCC-------------------------ACCCCC
s gorGor5.CYUI01015805v1      201595 108 +    698298 -CCA-CAGTCACTCACTCCC-----CCCTC-GTGGTCACT--CCCCACC--CCCCCACAGTCCACTCCTC------CCCTCCGTGGTCACTCCCCCCCCCCAGCCCCCACTCCGTGGTCCACCCCC
i gorGor5.CYUI01015805v1   C 0 I 11
s nomLeu3.chr6             120618307  97 - 121039945 -CCA-CAGTCACTC--TCCC-----CCCCC-ATGGTCACT--CCCCACC--CCCCCACAGTC-ACTTTCC------CCC-ACATGGTCACTCTCCCCCACATGGTCACTCCCC-------TCCCCC
i nomLeu3.chr6             C 0 I 1
s calJac3.chr2             203907357  99 + 204313951 ccca-cggtcactc--ccccaccagccccc-acggtcactccccccaccagcccccacggtc-actcccccaccagccc-ccacggtcactcccccgacca-------------------gccc--
i calJac3.chr2             C 0 C 0
e panTro5.chr5             181388291  53 - 181907262 I
e otoGar3.GL873745           1919970  29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671   0 -  91010382 C
e cerAty1.NW_012009470v1      318644  28 -  16742782 I
e colAng1.NW_012118799v1      245982 3143 -    514179 M
e macNem1.NW_012012389v1      317738  12 -   1764207 I
e macFas5.chr6             181308288 124 - 181584905 T
e rheMac8.chr6             179574532  12 - 180051392 I
e panPan2.chr5             183107760  15 - 183735486 I

a score=6999.000000
s hg38.chr5_KI270793v1_alt    123186 18 +    126136 CAACAGTCACTCTCCCC-C----
s panTro5.chr5             181388344 19 - 181907262 CAATTGTCACTCTCCCCGC----
i panTro5.chr5             I 53 C 0
s gorGor5.CYUI01015805v1      201714 17 +    698298 CCACAGTCACTCCTCCC------
i gorGor5.CYUI01015805v1   I 11 C 0
s nomLeu3.chr6             120618405 18 - 121039945 CCACAGTCACTCTCCCC-C----
i nomLeu3.chr6             I 1 C 0
s calJac3.chr2             203907456 23 + 204313951 tgacggtcactctccccaccagc
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e colAng1.NW_012118799v1      245982 3143 -    514179 M
e macNem1.NW_012012389v1      317738 12 -   1764207 I
e macFas5.chr6             181308288 124 - 181584905 T
e rheMac8.chr6             179574532 12 - 180051392 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=28245.000000
s hg38.chr5_KI270793v1_alt    123204 34 +    126136 TTCCATGGT-CACTC---CCCACC--CCCCTACAGTCACT
s panTro5.chr5             181388363 37 - 181907262 CTCCGTGGTCCACTC-AGCGCACC--CCCCCACAGTCACT
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201731 36 +    698298 -TCCGTGGT-CACTCCCCCCCACC--CCCCCACAGTCACT
i gorGor5.CYUI01015805v1   C 0 I 1
s nomLeu3.chr6             120618423 34 - 121039945 CCCCATGGT-CACTC---CCCACC--CCCCCACAGTCACT
i nomLeu3.chr6             C 0 I 16
s macFas5.chr6             181308164 32 - 181584905 TGCCATGGT-CACTC---CCCACC--CCCC--CAGTCATT
i macFas5.chr6             T 124 C 0
s calJac3.chr2             203907479 37 + 204313951 ccccacggt-cactc--ccccaccagcccccacggtcact
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e colAng1.NW_012118799v1      245982 3143 -    514179 M
e macNem1.NW_012012389v1      317738 12 -   1764207 I
e rheMac8.chr6             179574532 12 - 180051392 I
e panPan2.chr5             183107760 15 - 183735486 I

a score=39170.000000
s hg38.chr5_KI270793v1_alt    123238 48 +    126136 CTCCCC-----TC-TCCGTGGTCACTCCCCACC----CTCC-TACAGTCACTCTTC------ACC
s panTro5.chr5             181388400 49 - 181907262 CTACCC-----TCATCCATGGTCACTCCCCACC----CCCCGTACAGTCACTCTCC-------CT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107775 48 - 183735486 ctcccc-----cc-tccgtggtcactccccacc----cccC-TATAGTCACTCTCC------CCT
i panPan2.chr5             I 15 C 0
s gorGor5.CYUI01015805v1      201768 51 +    698298 ACCCCC-----CC-TCCGTGGTCACTCCCCACC----CCCC--ACAGTCACTCTCC--TCCACCC
i gorGor5.CYUI01015805v1   I 1 C 0
s nomLeu3.chr6             120618473 44 - 121039945 CTCTCC-----CC-CACATGGTCACTCC---CC----CCCC-TACAGTCACTCTCC-------CT
i nomLeu3.chr6             I 16 I 110
s macFas5.chr6             181308196 47 - 181584905 --CTCC-----CG-CCCATGGCCACTCCCCACA----CCCCCCACTGGCACTATCC------CCC
i macFas5.chr6             C 0 C 0
s calJac3.chr2             203907516 63 + 204313951 ccccccaccagcc-cccacggtcactccccccaccagcccc-cacGGTCACTCCCCCACCAGCCC
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e colAng1.NW_012118799v1      245982 3143 -    514179 M
e macNem1.NW_012012389v1      317738 12 -   1764207 I
e rheMac8.chr6             179574532 12 - 180051392 I

a score=3382.000000
s hg38.chr5_KI270793v1_alt    123286 3 +    126136 CCG
s panTro5.chr5             181388449 3 - 181907262 CTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107823 3 - 183735486 CTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201819 3 +    698298 CCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618627 3 - 121039945 CCA
i nomLeu3.chr6             I 110 C 0
s macFas5.chr6             181308243 3 - 181584905 CCA
i macFas5.chr6             C 0 I 42
s calJac3.chr2             203907579 3 + 204313951 CCA
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671 0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e colAng1.NW_012118799v1      245982 3143 -    514179 M
e macNem1.NW_012012389v1      317738 12 -   1764207 I
e rheMac8.chr6             179574532 12 - 180051392 I

a score=8585.000000
s hg38.chr5_KI270793v1_alt    123289 13 +    126136 T-GGTCACTCC-CCA--
s panTro5.chr5             181388452 13 - 181907262 T-GGTCACTCC-CCA--
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107826 13 - 183735486 T-GGTCACTCC-CCA--
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201822 15 +    698298 TAGGTCACTCCACCA--
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618630 13 - 121039945 T-GGTCACTCC-CCC--
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203907582 15 + 204313951 -CGGTCACTCC-CCCGA
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e manLeu1.NW_012110441v1      216181 187 -    438239 I
e chlSab2.chr4              90619671  0 -  91010382 C
e cerAty1.NW_012009470v1      318644 28 -  16742782 I
e colAng1.NW_012118799v1      245982 3143 -    514179 M
e macNem1.NW_012012389v1      317738 12 -   1764207 I
e macFas5.chr6             181308246 42 - 181584905 I
e rheMac8.chr6             179574532 12 - 180051392 I

a score=49297.000000
s hg38.chr5_KI270793v1_alt    123302 40 +    126136 CC--CCCCCACAGTCACTCTCCCC------CCCCCAT--GGTCACTCTC-C
s panTro5.chr5             181388465 40 - 181907262 CC--TCTCTACAGTCCTTCT-CCC------CCTCCAT--GGTCACTCTCAC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107839 39 - 183735486 CC--CTCCTACAGTCACTCT-CCC------CCTCCAT--GGTCACTCTC-C
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201837 35 +    698298 CC--CACCTG------TCCT-CCC------CCCCCATCCAGTCACTCTC-C
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618643 38 - 121039945 CC--CCCCCACAGTCACTCT--CC------CTGCCAT--GGTCACTCTC-C
i nomLeu3.chr6             C 0 C 0
s cerAty1.NW_012009470v1      318672 35 -  16742782 CC--CCCCCACAGTCACTCT--CC------CCACCAT--GGTCACTC----
i cerAty1.NW_012009470v1   I 28 C 0
s chlSab2.chr4              90619671 35 -  91010382 CC--CCCCCACAGTCACTCT--CC------CCACCAT--GGTCACTC----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      216368 35 -    438239 CC--CCCCCACAGTCACTCT--CC------CCACCAT--AGTCACTC----
i manLeu1.NW_012110441v1   I 187 C 0
s calJac3.chr2             203907597 45 + 204313951 CCAGCCCTGACGGTCACTCC-CCCCACCAGCCCCCAC--GGTCACTCC---
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e colAng1.NW_012118799v1      245982 3143 -    514179 M
e macNem1.NW_012012389v1      317738 12 -   1764207 I
e macFas5.chr6             181308246 42 - 181584905 I
e rheMac8.chr6             179574532 12 - 180051392 I

a score=35774.000000
s hg38.chr5_KI270793v1_alt    123342 16 +    126136 CC---CAC-CCCCCTCGATG
s panTro5.chr5             181388505 16 - 181907262 CC---CAC-CCCCCTCGACG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107878 16 - 183735486 CC---CAC-CCCCCTCGACG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201872 19 +    698298 CCTCACCC-CCCCCTCGACG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618681 17 - 121039945 CC---CACACCCCCCCAATG
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181308288 16 - 181584905 CC---CGC-CCCTTCCAAAG
i macFas5.chr6             I 42 C 0
s cerAty1.NW_012009470v1      318707 16 -  16742782 CC---CGC-CCCTTCCAACG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619706 16 -  91010382 CC---CGC-CCCTTCCAACG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      216403 16 -    438239 CC---CGC-CCCTTCCAATG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203907642 16 + 204313951 CC---CAC-CAGCCCCCATG
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e colAng1.NW_012118799v1      245982 3143 -    514179 M
e macNem1.NW_012012389v1      317738 12 -   1764207 I
e rheMac8.chr6             179574532 12 - 180051392 I

a score=16005.000000
s hg38.chr5_KI270793v1_alt    123358 3 +    126136 GTC
s panTro5.chr5             181388521 3 - 181907262 GTC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107894 3 - 183735486 GTC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201891 3 +    698298 GTC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618698 3 - 121039945 GTC
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181308304 3 - 181584905 GTC
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      318723 3 -  16742782 GTC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619722 3 -  91010382 GTC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      216419 3 -    438239 GTC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249162 3 -    514179 GTC
i colAng1.NW_012118799v1   M 3143 C 0
s calJac3.chr2             203907658 3 + 204313951 GTC
i calJac3.chr2             C 0 C 0
e otoGar3.GL873745           1919970 29 -   2165740 I
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e macNem1.NW_012012389v1      317738 12 -   1764207 I
e rheMac8.chr6             179574532 12 - 180051392 I

a score=-2109.000000
s hg38.chr5_KI270793v1_alt    123361 2 +    126136 A----C
s panTro5.chr5             181388524 2 - 181907262 A----C
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107897 1 - 183735486 A-----
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201894 6 +    698298 CCACCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618701 2 - 121039945 A----C
i nomLeu3.chr6             C 0 C 0
s macFas5.chr6             181308307 2 - 181584905 A----C
i macFas5.chr6             C 0 C 0
s cerAty1.NW_012009470v1      318726 2 -  16742782 A----C
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619725 2 -  91010382 A----C
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      216422 2 -    438239 A----C
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249165 2 -    514179 A----C
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203907661 2 + 204313951 A----C
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1919999 2 -   2165740 A----T
i otoGar3.GL873745         I 29 C 0
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e macNem1.NW_012012389v1      317738 12 -   1764207 I
e rheMac8.chr6             179574532 12 - 180051392 I

a score=13235.000000
s hg38.chr5_KI270793v1_alt    123363 2 +    126136 CC
s panTro5.chr5             181388526 2 - 181907262 CC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107898 2 - 183735486 CC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201900 2 +    698298 CT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618703 2 - 121039945 CC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574544 2 - 180051392 CC
i rheMac8.chr6             I 12 C 0
s macFas5.chr6             181308309 1 - 181584905 -C
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      317750 2 -   1764207 CC
i macNem1.NW_012012389v1   I 12 C 0
s cerAty1.NW_012009470v1      318728 2 -  16742782 CC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619727 2 -  91010382 CC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      216424 2 -    438239 CC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249167 2 -    514179 CC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203907663 2 + 204313951 TC
i calJac3.chr2             C 0 I 33
s otoGar3.GL873745           1920001 2 -   2165740 CC
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      144464 4741 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M

a score=2891552.000000
s hg38.chr5_KI270793v1_alt    123365 409 +    126136 CCCA-GCACACATCCAG-ATGC--TCCTCCCACAGCAGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTAAAAATGGAGGAGG-ATGCTGTTTCTCATTTGTCCAG-GTCTCCAGCCACCCGGGATTCCATCCCCTCATTCTGTTAAAGGGGTCACT-GCGTCCACGCTGTTCTGAGGCCTTTTCCCATTTGCACAGGGAAAGCAGGGGAGGGGTGGCAGCTGCTGGCCCCTGCTTCTCAGCACTGGGCTCTG----TGTGGCGCCCACGTGGCCACTGTGCCCTGCAGG-CGTCTGCTGCTCTTCCAGGCACAGGCGTCCGGGTCTGGGAGCCACT-------TTGCTAGCCGAGGTGTGAGCCCCCGCTGTATGCCACTCAACCAGCCG-----CACCCCTGCCCTCCCCTTCTGAGCCTCTGGCCCGGCCCCC
s panTro5.chr5             181388528 409 - 181907262 CCCA-GCACACGTCCAG-ATGC--TCCTCCCACAGCAGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTGAAAATGGAGGAGG-ATGCTGTTTCTCATTTGTCCAG-GTCTCCAGCCACCCGGGCCTCCATCCCCTCATTCTGTTAAAGGGGTCACT-GTGTCCACGCTGTTCTGAGGCCTTTTCCCATTTGCGCAGGGAAAGCAGGGGAGGGGTGGCTGCTGCTGGCCCCTGCTTCTCAGCACTGGGCTCTG----TGTGGCGCCCATGTGGCCACTGTGCCCTGCAGG-CGTCTGCTGCTCTTCCAGGCACAGGCATCCGGGTCTGGGAGCCACT-------TTGCTAGCCGAGGTGTGAGCCCCCGCTGTATGCCACTCAACCAGCCG-----CACCCCTGCCCTCCCCTTCTGAGCCTCTGGCCCGGGCCCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183107900 409 - 183735486 CCCA-GCACACGTCCAG-ATGC--TCCTCCCACAGCAGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTGAAAATGGAGGAGT-ATGCTGTTTCTCATTTGTCCAG-GTCTCCAGCCACCCGGGCCTCCATCCCCTCATTCTGTTAAAGGGGTCACT-GTGTCCACGCTGTTCTGAGGCCTTTTCCCATTTGCGCAGGGAAAGCAGGGGAGGGGTGGCTGCTGCTGGCCCCTGCTTCTCAGCACTGGGCTCTG----TGTGGCGCCCATGTGGCCACTGTGCCCTGCAGG-CGTCTGCTGCTCTTCCAGGCACAGGCGTCCGGGTCTGGGAGCCACT-------TTGCTAGCCGAGGTATGAGCCCCCACTGTATGCCACTCAACCAGCCG-----CACCCCTGCCCTCCCCTTCTGAGCCTCTGGCCCGGCCCCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      201902 413 +    698298 CCCACACACACGTCCAGAATGCCTCCTCCCCACAGCAGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTAAAAATGGAGGAGG-ATGCTGTTTCTCACTTGTCCAG-GTCTCCAGCCACCTGGGCCTCCATCCCCTCTTTCTGTTAAAGGGGTCACTGGCGTCCACGCTGTTCTGAGG-CTTTTCCCATTTGCGCAGGGAAAGCAGGGGAGGGGTGGCTGCTGCTGGCCCCTGCTTCTCAGCACTGGGCTCTG----TGTGGCGCCCATGTGGCCACTGTGCCCTGCGGGCCGTCTGCTGCTCTTCCAGGCACAGGCGTCCGGGTCTGGGAGCCACT-------TTGCTAGCCGAGGTGTGAGCCCCCGCTGTATGCCACTCAACCATCCG-----CACCCCGG-CCTCCCCTTCTGAGCCTCTGGCCCGGCCCCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120618705 387 - 121039945 TCCA-GCACACATCCAG-ATGC--TCCTCCCACAGCAGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTGAAAATTGAGGAGG-ATGCTGTTTCTCATTTGTGCAG-GTCTCCAGCCACCCGGGCCTCCATCCCTTCATTCTGTTAAAGGGGTCACT-GCGTCCATGCTGTTCTGAGGCCTTTTCCCATTTGTGCAGGGAAAGCAGGGGAGGGGTGGCTGCTGTTGGCCCCTGCTTCTCAGCAC--------------------------CGGCCACTGTGCCCTGCGGG-CGTCTGCTGCTTTTCCAGACACGGGCGTCCAGGTCTGGAAGCCACT-------TTGCCAGCTGAGGTGTGAGCCCCTGCTGTGTGCCACTCAGCCATCCG-----CACCCCTCCCTTCCCCTTCTGAGCCTCTGGCCCGGCCCCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574546 401 - 180051392 CCCA-GCACATGTCCAG-ATGC--TCCTCCCACAGCAGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTGAAAACTGAGGAGG-CTGCTGTTTCTCATTT-TCCAG-GTCTCCAGCCACCGGGGCCGCCATCCCCTCATTCTATTAAAGGGGTCACT-GCATCCATGCCATTCTGAGGCCTTTTCCCTTTTGTGCAGGGAAAGCAGGGGAGGGGTGGCTGCTGCTGGCCCCTGCTTCTCAGCGCTGCGCTCCG----TGTGGCGCCCACATGGCCGCTGTGCCCCGCAGG-CGTCTGCTGCTCTGCCAGGCACAGGCAT-CGGGTCTGGGAGCCACT-------TTGCTAGCTGAGGTGTGAGCCCCCGCTGTGTGCCACCCAACCATCCG-----CACCCCT------GCCCTCTGAGACTCTGGCCTGGCCCCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308310 401 - 181584905 CCCA-GCACATGTCCAG-ATGC--TCCTCCCACAGCAGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTGAAAACTGAGGAGG-CTGCTGTTTCTCATTT-TCCAG-GTCTCCAGCCACCGGGGCCGCCATCCCCTCATTCTATTAAAGGGGTCACT-GCATCCATGCCATTCTGAGGCCTTTTCCCTTTTGTGCAGGGAAAGCAGGGGAGGGGTGGCTGCTGCTGGCCCCTGCTTCTCAGCGCTGCGCTCCA----TGTGGCGCCCACATGGCCGCTGTGCCCCGCAGG-CGTCTGCTGCTCTGCCAGGCACAGGCAT-CGGGTCTGGGAGCCACT-------TTGCTAGCTGAGGTGTGAGCCCCCGCTGTGTGCCACCCAACCATCCG-----CACCCCT------GCCCTCTGAGACTCTGGCCTGGCCCCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      317752 401 -   1764207 CCCA-GCACATGTCCAG-ATGC--TCCTCCCACAGCAGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTGAAAACTGAGGAGG-CTGCTGTTTCTCATTT-TCCAG-GTCTCCAGCCACCGGGGCCGCCATCCCCTCATTCTATTAAAGGGGTCACT-GCATCCATGCCATTCTGAGGCCTTTTCCCTTTTGTGCAGGGAAAGCAGGGGAGGGGTGGCTGCTGCTGGCCCCTGCTTCTCAGCGCTGCGCTCCG----TGTGGTGCCCACATGGCCGCTGTGTCCCGCAGG-CGTCTGCTGCTCTGCCAGGCACAGGCAT-CGGGTCTGGGAGCCACT-------TTGCTAGCTGAGGTGTGAGCCCCCGCTGTGTGCCACCCAACCATCTG-----CACCCCT------GCCCTCTGAGACTCTGGCCTGGCCCCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      318730 401 -  16742782 CCCA-GCACATGTCCAG-ATGC--TCCTCCCACAGCGGCTT------------CCCTCCCTTAAGAGCCTCTGAAGCTGAAAACTGAGGAGG-CTGCTGTTTCTCATTT-TCCAG-GTCTCCAGCCACCAGGGCCGCCATCCCCTCATTCTATTAAAGGGGTCACT-GCATCCATGCCATTCTGAGGCCTTTTCCCTTTTGTGCAGGGAAAGCAGGGGAGGGGTGGCTGCTGCTGGCCCCTGCTTCTCAGCGCTGCGCTCCG----TGTGGCACCCACGTGGCCGCTGTGCCCCGCAGG-TGTCTGCTGCTCTGCCAGGCACAGGCAT-CGGGTCTGGGAGCCACT-------TTGCTAGCTGAGGTGTGAGCCCCCGCTCTGTGCCACCCAACCATCCG-----CACCCCT------GCCCTCTGAGACTCTGGCCTGGCCCCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90619729 401 -  91010382 CCCG-GCACATGTCCAG-ATGC--TCCTCCCACAGCGGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTGAAAACTGAGGAGG-CTGCTGTTTCTCATTT-TCCAG-GTCTCCAGCCACCAGGGCCGCCATCCCCTCTTTCTATTAAAGGGGTCACT-GCATCCATGCCATTCTGAGGCCTTTTCTCATTTGTGCAGGGAAAGCAGGGGAGGGGTGGCTGCTGCTGGCCCCTGCTTCTCAGCGCTGTGCTCCG----TGTGGCACCCACGTGGCCGCTGTGCCCCACAGG-CATCTGCTGCTCTGCCAGGCACAGGCAT-CGGGTCTGGGAGCCACT-------TTGCTAGCTGAGGTGTGAGCCCCTGCTGTGTGCCACCCAACCATTCG-----CACCCCT------GCCCTCTGAGACTCTGGCCTGGCCCCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      216426 401 -    438239 CCCA-GCACATGTCCAG-ATGC--TCCTCCCACAGCGGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTGAAAACTGAGGAGG-CTGCTGTTTCTCATTT-TCCAG-GTCTCCAGCCACTGGGGCCGCCATCCCCTCATTCTATTAAAGGGGTCACT-GCATCCATGCCATTCTGAGGCCTTTTCCCTTTTGTGCAGGGAAAGCAGGGGAGGGGTGGCTGCTGCTGGCCCCTGCTTCTCAGCGCTGGGCTCCG----TGTGGCGCCCACATGGCTGCTGTGCCCCGCAGG-CGTCTACTGCTCTGCCAGGCACAGGCAT-CGGGTCTGGGAGCCACT-------TTGCTAGCTGAGGTGTGAGCCCCCGCTCTGTGCCACCCAACCATCCG-----CACCCCT------GCCCTCTGAGACTCTGGCCTGGCCCCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249169 408 -    514179 CCCA-GCACATGTCCAG-ATGC--TCCTCCCACAGCGGCCT------------CCCTCCCTTAAGAGCCTCTGAAGCTGCAAACTGAGGAGG-TTGCTGTTTCTCCTTTGTCCAG-GTCTCCAGCCACCGGGGCCGCCGTCCCCTCATTCTATTAAAGGGGTCACT-GCATCCATGCCATGCTGAGGCCTTTTCCCATTTGTGCAGGGAAAGCAGGGGACGGGTGGCTGCTGCTGGCCCCTGCTTCTCAGCGCTGTGCTCCG----TGTGGCGCCCACATGGCCGCTGTGCCCTGCAGG-CATCTGCTGCTCTGCCAGGCACAGGCAT-CGGGTCTGGGAGCCACT-------TTGCTAGCTGAGGTGTGAGCCCCCGCTGTGTGCCACCCAACCATCCG-----CACCCCTCCCCTCCCCCTCTGAGACTCTGGCCTGGCCCCC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203907698 400 + 204313951 CCCA-GTACACATCCAG-ATGC--TCCTCCCACCGCGGCCT------------ACTTCCCTTAAAAGCCTCTGAAGCTGGAAATGGAGGAGG-ACGCTGTTTCTCATTTGTCCAG-CTCTCTGGCCACCCTGGCCACCATCCCCTCATTCTGTTAAAGGGGCCACT-GAGTCCACGCTGTTCTGAGGCCTTTTCCCACTTGTGCAGGGAAAGGAGGGGAGGGGTGGCTGCTGCTGGAACCTGCTTCCTGGCGGAGGGCCCTG----TG--------ACATGGCCGCTGTGCCCCACAGG-TGTCTGCTGCTCTGCCAGGCGCAGGCATTTAGGTCCGGGAGCCACT-------TTGCTAGCTGGGGTGTGAGCTCCTGCTGTGTGCCACTCAGCCATCCG-----CACCCGT-CCCTCCCCTGCTGAGGCTCTGGCCTGGCCCCT
i calJac3.chr2             I 33 C 0
s cebCap1.NW_016108158v1      149205 385 +    298490 CCCA-GCGCACCTCCAG-ATGC--TCCTCCCACAGCACCCT------------CCTTCCCTTAAAAGCCTCTGAAACTAGAAATGGAGGAGG-ATGC-------------TCCAG-CTCT---------CCAGCCACCATCCCCTCATTATGTTAAAGGGACCACT-GCGTCCACGCCATTCTGAGGCCTTTTCCCACTTGTGCAGGGAAAGGAGGGGAGAGCGGGCTGCAGCTGGAACCTGCTTCCCAGTGGAGGGCCCTG----TGAGACGGCCACCTGGCCACTGTGCCCCACAGG-CGTCTGCTG-TCTGCCAGCCGCAGGCGTCCGGGTCCAGGAGCCACT-------TTGCCAGCTGAGATGTGAGCTCCTGCTGTGTGCCACTCGGCCATCCA-----CACCCGC-CCCTCCCCTGCTGAGGCTCTGGCCTGGCCCCC
i cebCap1.NW_016108158v1   I 4741 C 0
s otoGar3.GL873745           1920003 424 -   2165740 GCCA-GTATGTATCCAG-TTCC--T-----CATAGCAGCATTTGGTGATGTGACTAATGTTTTGTAGTCTTAAAACTTAATACCTAAAGAGGAATGCCATTTTTGACCTGTCCAGCCTTTCTAGCCATGGGGGCCACCATCACCTTGTTTCA-TAGAAAGATCATC-ATGCACATGCCACTCTGGGGCCTCCCCCAATTCATACAGGGAAAGGAGGGAGTTGGCGG-GGCTGCTGGCTGTATGCCCTGGGAGCCGGGTCCTGAAGCTCCGGCTGGCATGT---CTTTGCTCCTCTAGGG-TGTTAGCTGTTTTGCCAGGTGCAGGTGT-TAGAGATGGGTGCCACCAATCCCATGGCTGGATGGGGCCTGAGCGAGTG-TCTACCCTACCCTGCCTGTCAGGAGTGGCCTCTGCC---CTCTTCTGAGGTTCTGCCCTGGCTGCC
i otoGar3.GL873745         C 0 I 52
e saiBol1.JH378155          16057396 4692 +  16417988 M

a score=1367646.000000
s hg38.chr5_KI270793v1_alt    123774 194 +    126136 ATGAAGGG----GCCATGTCGGTGGCCGGCCAGGAGCTGGGCACGAACACCCCTTCCCCTTCAGCCCCCACGTTTAGAGACAGTGGCCTCACAGCGCTGAGGGGTGCAGGTCCCGGTGCCCATGGCCCCAGAGGGAGGCACTGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCCGAGCCCTCTGGGCTCACCC
s panTro5.chr5             181388937 194 - 181907262 ATGAAGGG----GCCATGTTGGTGGCCGGCCAGGAGCTGGGCACGAACACCCCTTCTCCTTCGGCCCCCACGTTTAGAGACAGTGGCCTCACAGCGCTGAGGGGTGCAGGTCCCGGTGCCCATGGCCCCCGAGGGAGGCACTGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCTGAGCCCTCTGGGCTCACCC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183108309 194 - 183735486 ATGAAGGG----GCCATGTTGGTGGCCGGCCAGGAGCTGGGCACGAACACCCCTTCTCCTTCAGCCCTCACGTTTAGAGACAGTGGCCTCACAGCACTGAGGGGTGCAGGTCCCGGTGCCCATGGCCCCCGAGGGAGGCACTGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCTGAGCCCTCTGGGCTCACCC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      202315 194 +    698298 ATGAAGGG----GCCGTGTCGGTGGCCGGCCAGGAGCTGGGCACGAACACCCCTTCTCCTTCAGCCCCCACATTTAGAGACAGTGGCCTCACAGCACTGAGGGGTGCAGGTCCCGGTGCCCATGGCCCCCAAGGGAGGCACTGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCCGAGCCCTCTGGGCTCACCC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120619092 191 - 121039945 ATGCAGGG----GCCACGTCGGTGGCTGGCCAGGAGCTGGGCACGAACACCCGTTCTC---CAGCCCCCACGTTTAGAGACAGTGGCCTCACAGCTCTGAGGGGTGCAGGTCCCGGTGCCCACGGCCCCCGAGGGAGGCACTGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCCGAGCCCTCTGGGCTCACCC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179574947 187 - 180051392 ATGCAGGG----GCCACGTCGGTGGCTGGCCAGGAGCTGGGCACGAACACCCCTTCTCCTTCAGCCCCCGCATTTAGAGACAGTAGCCTCACAGCTCTGAGGGGTACAGGTCCCGGTGCCCACAGCCCCCGAGGGAGACACTGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCCGAGCC-------CTCACCC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308711 187 - 181584905 ATGCAGGG----GCCACGTCGGTGGCTGGCCAGGAGCTGGGCACGAACACCCCTTCTCCTTCAGCCCCCGCATTTAGAGACAGTAGCCTCACAGCTCTGAGGGGTACAGGTCCCGGTGCCCACAGCCCCCGAGGGAGACACAGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCCGAGCC-------CTCACCC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      318153 187 -   1764207 ATGCAGGG----GCCACGTCGGTGGCTGGCCAGGAGCTGGGCACGAACACCCCTTCTCCTTCAGCCCCCGCATTTAGAGACAGTAGCCTCACAGCTCTGAGGGGTACAGGTCCCGGTGCCCACAGCCCCCGAGGGAGACACTGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCCGAGCC-------CTCACCC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      319131 187 -  16742782 ATGCAGGG----GCCATGTCGGTGGCTGGCCAGGAGCTGGGCACGAACACCCCTTCTCCTTCAGCCCCCGCATTTAGAGACAGTAGCCTCACAGCTCTGAGGGGTACAGGTCCCGGTGCCCATAGCCCCCGAGGGAGACACTGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCCGAGCC-------CTCACCC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90620130 193 -  91010382 ATGCAGGG----GCCACGTCGGTGGCCGGCCAGGAGCTGGGCACAAACACCCCTTCTCCTTCAGCCCCCGCATTTAGAGACAGTAGCCTCAGAGCTCTGAGGGGTACAGGTCCTGGTGCCCACAGCCCCCGAGGGAGACACTGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACTCTGAGCCC-CTGGGCTCACCC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      216827 187 -    438239 ATGCAGGG----ACCACGTCGGTGGCTGGCCAGGAGCTGGGCACGAACACCCCTTCTCCTTCAGCCCCCGCATTTAGAGACAGTAGCCTCACAGCTCTGAGGGGTACAGGTCCCGGTGCCCACAGTCCCCGAGGGAGACACTGCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCCGAGCC-------CTCACCC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249577 191 -    514179 ATGCAGGG----GCCACGTCGGTGGCCGGCCAGGAGCTGGGCACGAACACCCCTTCTCCTTCAGCCACTGCATTTAGAGACAGTAGCCTCACAGCTCTGAGGGGTGCAGGTCCCGGTGCCCACAGCCCCCGAGGGAGACA--GCCCAGCAGCTGAGG-GTTTGTCTGCTGTCCCCACCCCGAGCCC-CCGGGCTCACTC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203908098 196 + 204313951 ATGCAGGGGTCAGTCACGTTGGTGGCCAGCCGGGAGCTGAGCACAAACACCTCTTCTCCTTCAGACCTTGCATTTACAGACAGCAGCCTCACAGCCCCGAGGGGTGCATG-CCCAGTG-CCATTGCCCCCAAGGGAGGCACTGCCTGGCGGCCAAAGTTTTTGTCTGCTGT-CCCTCCCTGAGCCCTCTGGGCTCACCC
i calJac3.chr2             C 0 C 0
s cebCap1.NW_016108158v1      149590 193 +    298490 ATGCAAGG----GTCACATCGGTGGCCAGCCAGGAACTGGGCGCAAACACCTCTTCTCCTTCAGACCTTGAATTTAGAGACAGCAGCCTCACAGCCCCAAGGGGTGCAGG-CCTGGTGCCCATGGCCCCCAAGGGAAGCACTGCCTGGTGGCCAAAA-GTTTGTCTCCTGTGCCCTCCCTGAGTCCTCTGGGCTCACCC
i cebCap1.NW_016108158v1   C 0 I 266
e otoGar3.GL873745           1920427  52 -   2165740 I
e saiBol1.JH378155          16057396 4692 +  16417988 M

a score=261677.000000
s hg38.chr5_KI270793v1_alt    123968 46 +    126136 GGGGGTGACAGGAGGAGGC-AGCGGGGCCGTGAGCCCGGGGAGCCTG
s panTro5.chr5             181389131 46 - 181907262 GGGGGTGACAGGAGGAGGT-AGCGGGGCCGTGAGCCCAGGGAGCCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183108503 46 - 183735486 GGGGGTGACAGGAGGAGGT-AGCGGGGCCGTGAGCCCAGGGAGCCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      202509 46 +    698298 GGGGGTGACAGGAGGAGGC-AGCGGGGCCGTGAGCCCGGGGAGCCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120619283 43 - 121039945 GGGGGTGAC--GAGTAGGC-AGT-GGGCCGTGAGCCCGGGGAGCCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179575134 46 - 180051392 AAGGGCAATAGGAGGAGCC-AGTGGGGCCGTGAGCCTGGGGAGCCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308898 46 - 181584905 AAGGGCAATAGGAGGAGCC-AGTGGGGCCGTGAGCCTGGGGAGCCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      318340 46 -   1764207 AAGGGCAATAGGAGGAGCC-AGTGGGGCTGTGAGCCTGGGGAGCCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      319318 46 -  16742782 AGGGGCAATAGGAGGAGCC-AGTGGGGCCGTGAGCCTGGGGAGCCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90620323 46 -  91010382 AGGGGCAACAGGAGGAACC-AGTAGGGCTGTGAGCCTGGGGAGCCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      217014 46 -    438239 AGGGGCAATAGGAGGAGCC-AGTGGGGCTGTGAGCCTGGGGAGCCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249768 46 -    514179 AGGGGTGATAGGAGGAGCC-AGTGGGGCCGTGAGCCTGGGGAGCCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203908294 47 + 204313951 AGGGGCTATAGGGTGAGCCAAGTGGGGCTGGGAGCCTAGGGAGCCTG
i calJac3.chr2             C 0 M 1277
e otoGar3.GL873745           1920427 52 -   2165740 I
e cebCap1.NW_016108158v1      149783 266 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M

a score=128818.000000
s hg38.chr5_KI270793v1_alt    124014 69 +    126136 AGATCTGGCCGCTTGCTGTGTGGTCTGAAGGTCCCGGCACCCTCCCTGGCTGCCGCCGCC-GGACACACT
s panTro5.chr5             181389177 69 - 181907262 AGATCTGGCCGCTTGCTGTGTGGTCTGAAGGTCCCGGCACCCTCCCTGGCTGCCGCCGCC-AGACACACC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183108549 69 - 183735486 AGATCTGGCCACTTGCTGTGTGGTCTGAAGGTCCCGGCACCCTCCCTGGCTGCCGCCGCC-GGACACACC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      202555 70 +    698298 AGATCTGGCCGCTTGCTGTGTGGTCTGAAGGTCCCGGCACCCTCCCTGGCTGCCGCTGCCGGGACACACC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120619326 69 - 121039945 AGATCTGGCCGCTTGCTGCGTAGCCTGAAGGTTCTGGCACCCTCCCTGGCTGCCGCCACC-AGACACACC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179575180 28 - 180051392 AGATCTGGCCGCT-----------------------------------------GCCACC-GGACACACC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308944 28 - 181584905 AGATCTGGCCGCT-----------------------------------------GCCACC-GGACACACC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      318386 28 -   1764207 AGATCTGGCCGCT-----------------------------------------GCCACC-GGACACACC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      319364 28 -  16742782 AGATCTGGCCTCT-----------------------------------------GTCACC-GGACACACC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90620369 28 -  91010382 AGATCTGGCCACT-----------------------------------------GCCACC-GGACACACC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      217060 28 -    438239 AGATCTGGCCTCT-----------------------------------------GTCACT-GGACACACC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249814 28 -    514179 AGACCTGCCCTCT-----------------------------------------GCCACC-GGACACACT
i colAng1.NW_012118799v1   C 0 C 0
e otoGar3.GL873745           1920427 52 -   2165740 I
e cebCap1.NW_016108158v1      149783 266 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M
e calJac3.chr2             203908341 1277 + 204313951 M

a score=76018.000000
s hg38.chr5_KI270793v1_alt    124083 17 +    126136 GGAGGAGG--------CTGTGGAGT
s panTro5.chr5             181389246 17 - 181907262 GGAGGAGG--------CTGTGGAGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183108618 17 - 183735486 GGAGGAGG--------CTGTGGAGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      202625 17 +    698298 GGAGGAGG--------CTGTGGAGT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120619395 17 - 121039945 GGAGGTGG--------CCATGGAGT
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179575208 18 - 180051392 AGAGGAGGC-------CCACGGAGT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308972 18 - 181584905 AGAGGAGGC-------CCACGGAGT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      318414 18 -   1764207 AGAGGAGGC-------CCACGGAGT
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      319392 18 -  16742782 AGAGGAGGC-------CCACGGAGT
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90620397 18 -  91010382 AGAGGAGGC-------CCTCGGAGT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      217088 18 -    438239 AGAGGAGGC-------CCACGGAGT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249842 18 -    514179 ACAGGAGGC-------CCACGACGT
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203909664 25 + 204313951 GGAGGAGGCGTTCACGTCATGGAGT
i calJac3.chr2             M 1277 C 0
e otoGar3.GL873745           1920427 52 -   2165740 I
e cebCap1.NW_016108158v1      149783 266 +    298490 I
e saiBol1.JH378155          16057396 4692 +  16417988 M

a score=483720.000000
s hg38.chr5_KI270793v1_alt    124100 66 +    126136 TCTCTCCCGAGGGCCAAATCCAACGG-CCCCTGCAGCGGCTCAAGGTTCAGCCAGTCCTGGACCCTG
s panTro5.chr5             181389263 66 - 181907262 TCTCTCCTGAGGGCCAAATCCAACGG-CCCCTGCAGCGGCTCAAGGTTCAGCCAGTCCTGGACCCTG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183108635 66 - 183735486 TCTCTCCTGAGGGCCAAATCCAACGG-CCCCTGCAGCGGCTCAAGGTTCAGCCGGTCCTGGACCCTG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      202642 67 +    698298 TCTCTCCTGAGGGCTAAATCCCACGGCCCCCTGCAGCGGCTCAAGGTTCAGCCAGTCCTGGACCCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120619412 66 - 121039945 TCTCTCCTGAGGGCCAAATCCCACGG-CCCCTGCAGCGGCTCAAGGTTTAGCCAGTCCTGCACCCTG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179575226 66 - 180051392 TCTCTCCTGAGGGCCAAATCCCATGG-CCCCTGCAGCGGCTCAAGGTTCAGCCAGTCCTGGACCCTG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181308990 66 - 181584905 TCTCTCCTGAGGGCCAAATCCCATGG-CCCCTGCAGCGGCTCAAGGTTCAGCCAGTCCTGGACCCTG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      318432 66 -   1764207 TCTCTCCTGAGGGCCAAATCCCATGG-CCCCTGCAGCGGCTCAAGGTTCAGCCAGTCCTGGACCCTG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      319410 66 -  16742782 TCTCTCCTGAGGGCCAAATCCCATGG-CCCCTGCAGTGGCTCAAGGTTCAGCCAGTCCTGGACCCTG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90620415 66 -  91010382 TCTCTCCTGAGGGCCAAATCCCACAG-CCCCTGCAGCGGCTCAAGGTTCAGCCAGTCCTGGACCCTG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      217106 66 -    438239 TCTCTCCTGAGGGCCAAATCCCATGG-CCCCTGCAGTGGCTCAAGGTTCAGCCAGTCCTGGACCCTG
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249860 66 -    514179 TCTCTCCTGAGGGCCAAATCCCACGG-CCCCTGCAGTGGCTCAAGGTTCAGCCAGTCCTGGACCCTG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203909689 60 + 204313951 TCTCTCTTGAGAAACAAATCCCATGG-ACCC-GCAGCAGCTCAAGGTTCAGCCTGTCCTGGA-----
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16062090 60 +  16417988 TCTCTCCTGAGAAACAAATCCCATGG-GCCC-GCAGCGGCTCAAGGTTCAGCCTGTCCTGGA-----
i saiBol1.JH378155         M 4692 C 0
e otoGar3.GL873745           1920427 52 -   2165740 I
e cebCap1.NW_016108158v1      149783 266 +    298490 I

a score=62880.000000
s hg38.chr5_KI270793v1_alt    124166 12 +    126136 CATGTCCACCGC
s panTro5.chr5             181389329 12 - 181907262 CATGTCCACCGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183108701 12 - 183735486 CATGTCCACCGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      202709 12 +    698298 CATGTCCACCGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120619478 11 - 121039945 AGTGTCCACCG-
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179575292 12 - 180051392 CACGTCTACCGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181309056 12 - 181584905 CACGTCTACCGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      318498 12 -   1764207 CACGTCTACCGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      319476 12 -  16742782 CACGTCTACCGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90620481 12 -  91010382 CACGTCTACTGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      217172 12 -    438239 CACGTCTACCGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249926 12 -    514179 CATGTCTACCGC
i colAng1.NW_012118799v1   C 0 C 0
s otoGar3.GL873745           1920479 12 -   2165740 CATGTGCACCTC
i otoGar3.GL873745         I 52 C 0
e cebCap1.NW_016108158v1      149783 266 +    298490 I
e saiBol1.JH378155          16062150  0 +  16417988 C
e calJac3.chr2             203909749  0 + 204313951 C

a score=6327481.000000
s hg38.chr5_KI270793v1_alt    124178 802 +    126136  
s panTro5.chr5             181389341 801 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183108713 800 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      202721 799 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120619489 778 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179575304 807 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181309068 807 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      318510 807 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      319488 806 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90620493 801 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      217184 806 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      249938 799 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203909749 784 + 204313951  
i calJac3.chr2             C 0 I 2967
s saiBol1.JH378155          16062150 794 +  16417988  
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      150049 774 +    298490  
i cebCap1.NW_016108158v1   I 266 C 0
s otoGar3.GL873745           1920491 919 -   2165740  
i otoGar3.GL873745         C 0 C 0

a score=4127302.000000
s hg38.chr5_KI270793v1_alt    124980 589 +    126136  
s panTro5.chr5             181390142 589 - 181907262  
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183109513 589 - 183735486  
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      203520 589 +    698298  
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120620267 588 - 121039945  
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179576111 583 - 180051392  
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181309875 584 - 181584905  
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      319317 585 -   1764207  
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      320294 585 -  16742782  
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90621294 629 -  91010382  
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      217990 584 -    438239  
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      250737 584 -    514179  
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16062944 584 +  16417988  
i saiBol1.JH378155         C 0 I 7
s cebCap1.NW_016108158v1      150823 592 +    298490  
i cebCap1.NW_016108158v1   C 0 I 76
s otoGar3.GL873745           1921410 675 -   2165740  
i otoGar3.GL873745         C 0 C 0
e calJac3.chr2             203910533 2967 + 204313951 I

a score=12896.000000
s hg38.chr5_KI270793v1_alt    125569 2 +    126136 ac
s panTro5.chr5             181390731 2 - 181907262 ac
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110102 2 - 183735486 ac
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204109 2 +    698298 ac
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120620855 2 - 121039945 at
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179576694 2 - 180051392 ac
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181310459 2 - 181584905 AC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      319902 2 -   1764207 ac
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      320879 2 -  16742782 ac
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90621923 2 -  91010382 AC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      218574 2 -    438239 AC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      251321 2 -    514179 ac
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16063535 2 +  16417988 ac
i saiBol1.JH378155         I 7 C 0
s otoGar3.GL873745           1922085 2 -   2165740 tc
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e calJac3.chr2             203910533 2967 + 204313951 I

a score=70831.000000
s hg38.chr5_KI270793v1_alt    125571 14 +    126136 gcccatctgtgtcg----
s panTro5.chr5             181390733 14 - 181907262 gcccatctgtgtcg----
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110104 14 - 183735486 gcCCATCTGTGTCG----
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204111 14 +    698298 gcccatctgtgtcg----
i gorGor5.CYUI01015805v1   C 0 C 0
s rheMac8.chr6             179576696 14 - 180051392 acCCGTCTGTGTCG----
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181310461 14 - 181584905 ACCCGTCTGTGTCG----
i macFas5.chr6             C 0 I 15
s macNem1.NW_012012389v1      319904 14 -   1764207 acctgtctgtgttg----
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      320881 14 -  16742782 gcccatctgtgtcg----
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90621925 14 -  91010382 GCCCGTCTGTGTCG----
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      218576 14 -    438239 GCCCGTCTGTGTCG----
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      251323 14 -    514179 acccgtctgtgtca----
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16063537 14 +  16417988 gcccctctgtgtcg----
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1922087 17 -   2165740 tcccatcc-tgtctgcta
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e calJac3.chr2             203910533 2967 + 204313951 I
e nomLeu3.chr6             120620857  0 - 121039945 C

a score=28976.000000
s hg38.chr5_KI270793v1_alt    125585 22 +    126136 ttacagcggctttcggcctcag
s panTro5.chr5             181390747 22 - 181907262 ttacagcggctttcggcctcag
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110118 22 - 183735486 TTACAGCGGCTTTCGGCCTCAG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204125 22 +    698298 ttacagcggctttcggcctcag
i gorGor5.CYUI01015805v1   C 0 C 0
s colAng1.NW_012118799v1      251337 22 -    514179 ttacagtggctttcggccacag
i colAng1.NW_012118799v1   C 0 C 0
s saiBol1.JH378155          16063551 22 +  16417988 ttacagctgctttcggcttcat
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1922104 22 -   2165740 ttaagccatcctttgacttcta
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e calJac3.chr2             203910533 2967 + 204313951 I
e nomLeu3.chr6             120620857  0 - 121039945 C
e manLeu1.NW_012110441v1      218590  0 -    438239 C
e chlSab2.chr4              90621939  0 -  91010382 C
e cerAty1.NW_012009470v1      320895  0 -  16742782 C
e macNem1.NW_012012389v1      319918  0 -   1764207 C
e macFas5.chr6             181310475 15 - 181584905 I
e rheMac8.chr6             179576710  0 - 180051392 C

a score=9627.000000
s hg38.chr5_KI270793v1_alt    125607 14 +    126136 --------------tggtagtgagtggt
s panTro5.chr5             181390769 14 - 181907262 --------------tggtagTGGGTGGT
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110140 14 - 183735486 --------------TGGTAGTGAGTGGT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204147 14 +    698298 --------------tggtagtgagtggt
i gorGor5.CYUI01015805v1   C 0 C 0
s saiBol1.JH378155          16063573 14 +  16417988 --------------tggcagtgagtagt
i saiBol1.JH378155         C 0 I 14
s otoGar3.GL873745           1922126 26 -   2165740 tttccaatatttcatgct--tcagttgt
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e calJac3.chr2             203910533 2967 + 204313951 I
e nomLeu3.chr6             120620857  0 - 121039945 C
e manLeu1.NW_012110441v1      218590  0 -    438239 C
e chlSab2.chr4              90621939  0 -  91010382 C
e cerAty1.NW_012009470v1      320895  0 -  16742782 C
e colAng1.NW_012118799v1      251359  0 -    514179 C
e macNem1.NW_012012389v1      319918  0 -   1764207 C
e macFas5.chr6             181310475 15 - 181584905 I
e rheMac8.chr6             179576710  0 - 180051392 C

a score=3194.000000
s hg38.chr5_KI270793v1_alt    125621 19 +    126136 AAAGTTTCACTGGAACACA-------
s panTro5.chr5             181390783 19 - 181907262 AAAGTTTCACTGGAACACA-------
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110154 19 - 183735486 AAAGTTTCACTGGAACACA-------
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204161  7 +    698298 AAGGTTT-------------------
i gorGor5.CYUI01015805v1   C 0 C 0
s otoGar3.GL873745           1922152 26 -   2165740 agagtttcatttggttctttttggta
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e saiBol1.JH378155          16063587 14 +  16417988 I
e calJac3.chr2             203910533 2967 + 204313951 I
e nomLeu3.chr6             120620857  0 - 121039945 C
e manLeu1.NW_012110441v1      218590  0 -    438239 C
e chlSab2.chr4              90621939  0 -  91010382 C
e cerAty1.NW_012009470v1      320895  0 -  16742782 C
e colAng1.NW_012118799v1      251359  0 -    514179 C
e macNem1.NW_012012389v1      319918  0 -   1764207 C
e macFas5.chr6             181310475 15 - 181584905 I
e rheMac8.chr6             179576710  0 - 180051392 C

a score=1013.000000
s hg38.chr5_KI270793v1_alt    125640 9 +    126136 GCGCCCATC
s panTro5.chr5             181390802 9 - 181907262 GCACACCCG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110173 9 - 183735486 GCACCAGTC
i panPan2.chr5             C 0 T 71
s macFas5.chr6             181310490 9 - 181584905 ACGCCCATC
i macFas5.chr6             I 15 C 0
s otoGar3.GL873745           1922178 9 -   2165740 acttctatt
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e saiBol1.JH378155          16063587 14 +  16417988 I
e calJac3.chr2             203910533 2967 + 204313951 I
e nomLeu3.chr6             120620857 0 - 121039945 C
e manLeu1.NW_012110441v1      218590 0 -    438239 C
e chlSab2.chr4              90621939 0 -  91010382 C
e cerAty1.NW_012009470v1      320895 0 -  16742782 C
e colAng1.NW_012118799v1      251359 0 -    514179 C
e macNem1.NW_012012389v1      319918 0 -   1764207 C
e rheMac8.chr6             179576710 0 - 180051392 C
e gorGor5.CYUI01015805v1      204168 0 +    698298 C

a score=17645.000000
s hg38.chr5_KI270793v1_alt    125649 42 +    126136 ---TGTGTCGTT--ACGGCGGCTTTCGGCCTCACTGGTAG------TGAGTGG
s panTro5.chr5             181390811 42 - 181907262 ---TCTGTCGTT--ACGGCCGCTTTCGGCCTCAGTGGTAG------TGAGTGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110111 42 - 183735486 ---TGTGTCGTT--ACAGCGGCTTTCGGCCTCAGTGGTAG------TGAGTGG
i panPan2.chr5             T 71 C 0
s macFas5.chr6             181310499 42 - 181584905 ---TGTGTCATT--ACAGTGGCTTTCAGCCACAGTGGTAG------TGAGTGG
i macFas5.chr6             C 0 C 0
s otoGar3.GL873745           1922187 53 -   2165740 tcaggggtcagcaaactctagcccatgggctgaccagttgctttcataagtgg
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e saiBol1.JH378155          16063587 14 +  16417988 I
e calJac3.chr2             203910533 2967 + 204313951 I
e nomLeu3.chr6             120620857  0 - 121039945 C
e manLeu1.NW_012110441v1      218590  0 -    438239 C
e chlSab2.chr4              90621939  0 -  91010382 C
e cerAty1.NW_012009470v1      320895  0 -  16742782 C
e colAng1.NW_012118799v1      251359  0 -    514179 C
e macNem1.NW_012012389v1      319918  0 -   1764207 C
e rheMac8.chr6             179576710  0 - 180051392 C
e gorGor5.CYUI01015805v1      204168  0 +    698298 C

a score=910.000000
s hg38.chr5_KI270793v1_alt    125691 1 +    126136 T
s panTro5.chr5             181390853 1 - 181907262 t
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110153 1 - 183735486 T
i panPan2.chr5             C 0 C 0
s macFas5.chr6             181310541 1 - 181584905 T
i macFas5.chr6             C 0 T 67
s calJac3.chr2             203913500 1 + 204313951 t
i calJac3.chr2             I 2967 C 0
e otoGar3.GL873745           1922240 0 -   2165740 C
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e saiBol1.JH378155          16063587 14 +  16417988 I
e nomLeu3.chr6             120620857 0 - 121039945 C
e manLeu1.NW_012110441v1      218590 0 -    438239 C
e chlSab2.chr4              90621939 0 -  91010382 C
e cerAty1.NW_012009470v1      320895 0 -  16742782 C
e colAng1.NW_012118799v1      251359 0 -    514179 C
e macNem1.NW_012012389v1      319918 0 -   1764207 C
e rheMac8.chr6             179576710 0 - 180051392 C
e gorGor5.CYUI01015805v1      204168 0 +    698298 C

a score=17596.000000
s hg38.chr5_KI270793v1_alt    125692 21 +    126136 AAAGTTTCACTGGAACACAGC---
s panTro5.chr5             181390854 21 - 181907262 aaagtttcactggaacacagc---
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110154 21 - 183735486 AAAGTTTCACTGGAACACAGC---
i panPan2.chr5             C 0 I 7
s gorGor5.CYUI01015805v1      204168 15 +    698298 ------TCACTGGAACACAGC---
i gorGor5.CYUI01015805v1   C 0 C 0
s calJac3.chr2             203913501 21 + 204313951 aaagttttactggaacatagc---
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1922240 22 -   2165740 --aatcttactagaacatagacat
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e saiBol1.JH378155          16063587 14 +  16417988 I
e nomLeu3.chr6             120620857  0 - 121039945 C
e manLeu1.NW_012110441v1      218590  0 -    438239 C
e chlSab2.chr4              90621939  0 -  91010382 C
e cerAty1.NW_012009470v1      320895  0 -  16742782 C
e colAng1.NW_012118799v1      251359  0 -    514179 C
e macNem1.NW_012012389v1      319918  0 -   1764207 C
e macFas5.chr6             181310542 67 - 181584905 T
e rheMac8.chr6             179576710  0 - 180051392 C

a score=252.000000
s hg38.chr5_KI270793v1_alt    125713 9 +    126136 GCCCATCTG
s panTro5.chr5             181390875 9 - 181907262 acacccgtc
i panTro5.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204183 9 +    698298 GCCTGTCTG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120620857 9 - 121039945 gcccgtctg
i nomLeu3.chr6             C 0 C 0
s calJac3.chr2             203913522 2 + 204313951 ac-------
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1922262 9 -   2165740 gcccatttg
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e saiBol1.JH378155          16063587 14 +  16417988 I
e manLeu1.NW_012110441v1      218590 0 -    438239 C
e chlSab2.chr4              90621939 0 -  91010382 C
e cerAty1.NW_012009470v1      320895 0 -  16742782 C
e colAng1.NW_012118799v1      251359 0 -    514179 C
e macNem1.NW_012012389v1      319918 0 -   1764207 C
e macFas5.chr6             181310542 67 - 181584905 T
e rheMac8.chr6             179576710 0 - 180051392 C
e panPan2.chr5             183110175 7 - 183735486 I

a score=2360.000000
s hg38.chr5_KI270793v1_alt    125722 5 +    126136 --TGTCA
s panTro5.chr5             181390884 5 - 181907262 --tgtcg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110182 5 - 183735486 --TGTCG
i panPan2.chr5             I 7 C 0
s gorGor5.CYUI01015805v1      204192 5 +    698298 --TGTCG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120620866 5 - 121039945 --tgtca
i nomLeu3.chr6             C 0 C 0
s otoGar3.GL873745           1922271 6 -   2165740 tctgtg-
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e saiBol1.JH378155          16063587 14 +  16417988 I
e calJac3.chr2             203913524 0 + 204313951 C
e manLeu1.NW_012110441v1      218590 0 -    438239 C
e chlSab2.chr4              90621939 0 -  91010382 C
e cerAty1.NW_012009470v1      320895 0 -  16742782 C
e colAng1.NW_012118799v1      251359 0 -    514179 C
e macNem1.NW_012012389v1      319918 0 -   1764207 C
e macFas5.chr6             181310542 67 - 181584905 T
e rheMac8.chr6             179576710 0 - 180051392 C

a score=217490.000000
s hg38.chr5_KI270793v1_alt    125727 53 +    126136 TTACGGCGGCTTTCGGCGCCCGTCTGTGTCGTTACAGCGGCTTTCGGCCTCAC
s panTro5.chr5             181390889 53 - 181907262 ttacggccgcttttggcgcccatctgtgttgttacggcggctttcggcctcac
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110187 51 - 183735486 TTACGGCGGCTTTGAGCACCCGTC--TGTCGTTACGGCGGCTTTCGGCCTCAC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204197 53 +    698298 TTACGGCGGCTTTCGGCGCCCGTCTGTGTCGTTACGGCGGCTTTCGGCCTCAC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120620871 47 - 121039945 ttacggcggcttt------ccgtctgtgtcattacggcggctttcggccacag
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179576710 53 - 180051392 TTACGGCAGCTTTCGACGCCCATCTGTGTCATTACAGTGGCTTTCAGCCACAG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181310475 53 - 181584905 TTACGGCAGCTTTCGACGCCCATCTGTGTCATTACAGTGGCTTTCAGCCACAG
i macFas5.chr6             T 67 C 0
s macNem1.NW_012012389v1      319918 53 -   1764207 ttacggcagctttcgacgcccatctgtgtcattacagtggctttcagccacag
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      320895 53 -  16742782 ttacggcagctttcgacgcccgtctgtgtcattacagtggctttcggccacag
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90621939 53 -  91010382 TTACGGCAGCTTTCGACGCTCGTCTGTGTCATAACAGTGGCTTTCGGCCACAG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      218590 53 -    438239 TTGCGGCAGCTTTCGATGCCCGTCTGTGTCATTACAGTGGCTTTTGGCCACAG
i manLeu1.NW_012110441v1   C 0 C 0
s calJac3.chr2             203913524 36 + 204313951 -----------------gcccctctgtgttgttatagctgcttttggctacat
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1922277 32 -   2165740 tggtggctgcctttgt------tctgtggtggcagagc---------------
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e saiBol1.JH378155          16063587 14 +  16417988 I
e colAng1.NW_012118799v1      251359  0 -    514179 C

a score=205907.000000
s hg38.chr5_KI270793v1_alt    125780 34 +    126136 TGGTAGTGAGTGGTTATGAAGTGATCCTCCTGTT
s panTro5.chr5             181390942 34 - 181907262 tggtagtgagtggttatgaagtgatcctcctgtt
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110238 34 - 183735486 TGGTAGTAAGTGGTTATGAAGTGATCCTCCTGTT
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204250 34 +    698298 TGGTAGTGAGTGGTTATGAAGCGATCTTCCTGTT
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120620918 34 - 121039945 tggtagtgagtggttgtgaagtgatccttctgtt
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179576763 34 - 180051392 TGGTAGTGAGTGGTTGTGAAGCGATCCTCCTGTT
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181310528 34 - 181584905 TGGTAGTGAGTGGTTGTGAAGCGATCCTCCTGTT
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      319971 34 -   1764207 tggtagtgagtggttgtgaagcgatcctcctgtt
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      320948 34 -  16742782 tggtagtgagtggttgtgaagcgatcctcctgtt
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90621992 34 -  91010382 TGGTAGTGAGTGGTTGTGAAGCGATCCTCCTGTT
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      218643 34 -    438239 TGGTAGTGAGTGGTTGTGAAGCGATCCGCCTGTT
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      251359 34 -    514179 tggtagcgagtggctgtgaagtgatcctcctgtt
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203913560 28 + 204313951 tggcagtgagtagttgtaacataggctg------
i calJac3.chr2             C 0 C 0
s otoGar3.GL873745           1922309 23 -   2165740 ------tgagtagttgtgaagtagactgt-----
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I
e saiBol1.JH378155          16063587 14 +  16417988 I

a score=67201.000000
s hg38.chr5_KI270793v1_alt    125814 13 +    126136 GGCAG-CTTGCAGG
s panTro5.chr5             181390976 13 - 181907262 ggcag-cttgcagg
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110272 13 - 183735486 GGCAG-CTTGCAGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204284 13 +    698298 GGCAG-CTCGCAGA
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120620952 13 - 121039945 ggcag-ctcgcaga
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179576797 13 - 180051392 GGCAG-CTCGAAGA
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181310562 13 - 181584905 GGCAG-CTCGAAGA
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      320005 13 -   1764207 ggcag-ctcgaaga
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      320982 13 -  16742782 ggcag-ctcgaaga
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90622026 13 -  91010382 GGCAG-CTGGAAGA
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      218677 13 -    438239 GGCAG-CTTGAAGA
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      251393 13 -    514179 ggcag-ctcgaaga
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203913588 12 + 204313951 agcagccttgga--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16063601 12 +  16417988 ggcagccttgga--
i saiBol1.JH378155         I 14 C 0
s otoGar3.GL873745           1922332 12 -   2165740 -gtag-cccacaaa
i otoGar3.GL873745         C 0 C 0
e cebCap1.NW_016108158v1      151415 76 +    298490 I

a score=1853845.000000
s hg38.chr5_KI270793v1_alt    125827 231 +    126136 ACCTAAAAT----ACTCACAATCTG-CCTTTAAG-AAAAAATGTGCCAAGCCCTGTTCCACTCCACCGCTGCGGCTTGTCCTTTTTAAGTGGTTATGAGAACG-TTTCTTTTCTATCCTTGAGC--------TGCTGTTT---TAGGCCCTTGTCTGCTGATTCCAG-GGTCTGACCATCTTGCGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCC----ACTTCACGTGTCTCGTGACTTCC---GTTGCCCCA-G
s panTro5.chr5             181390989 231 - 181907262 acctaaaat----actgacaatctg-cctttaag-aaaacatgtgccaagccctgTTCCACTCCACCGCTGCGGCTTGTCCTTTTTAAGTGGTTATGAGAACG-TTTCTTTTCTATCCTTGAGC--------TGCTGTTT---TAGGCCCTTGTCTGCTGATTCCAG-GGTCTGACCATCTTGAGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCC----ACTTCACGTGTCTCGTGACTTCC---GTTGCCCCA-G
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110285 231 - 183735486 ACCTAAAAT----ACTGACAATCTG-CCTTTAAG-AAAACATGTGCCAAGCCCTGTTCCACTCCACCGCTGCGGCTTGTCCTTTTTAAGTGGTTATGAGAACG-TTTCTTTTCTATCCTTGAGC--------TGCTGTGT---TAGGCCCTTGTCTGCTGATTCCAG-GGTCTGACCATCTTGAGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCC----ACTTCACGTGTCTCGTGACTTCC---GTTGCCCCA-G
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204297 231 +    698298 ACCTAAAAT----ACTGACAATCTG-CCTTTAAG-AAAAAATGTGCCAAGCCCTGTTCCACTCCACCGCTGCGGCTTGTCCTTTTTAAGTGGTTATGAGAACG-TTTCTTTTCTATCCTTGAGC--------TGCTGTTT---TAGGCCCTTGTCTGCTGATTCCAG-GGTCTGACCATCTTGAGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCC----ACTTCACGTGTCTTGTGACTTCC---GTTGCCCCA-G
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120620965 203 - 121039945 acctaaaat----actgacaatctg-cctttaag-aaaaaatgtgccaagccctgTCCCACTCCACAGCTGCGACCTGTCCTCTTTAAGTGGTTATGAGGACG-TTTCTTTTCTAACCT---------------------------------------TGATTCCAG-GGTCTGACCATCTTGAGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCC----TCTTCATGTGTCTCGTGACTTCC---GTTGCCCCA-G
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179576810 234 - 180051392 ACCTGAAAT----ACTGACAATCTG-CCTTTAAG-AAAAAACGTGCCAAGCCCTGTTCCACTGCACCGCTGAGGTTTGTCCTTTTTAAGTGATTATGAGGACG-TTTCTTTTCTATCCTTGAGC--------AGCTGTTT---TAGGCCCTTGTCTGCTGATTCCAG-GGTCTGACCATCTTGAGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCCT-CTTCTTCACGTGTCTCGTGACTCGG---GTTGCCCCA-G
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181310575 234 - 181584905 ACCTGAAAT----ACTGACAATCTG-CCTTTAAG-AAAAAACGTGCCAAGCCCTGTTCCACTGCACCGCTGCGGTTTGTCCTTTTTAAGTGATTATGAGGACG-TTTCTTTTCTATCCTTGAGC--------AGCTGTTT---TAGGCCCTTGTCTGCTGATTCCAG-GGTCTGACCATCTTGAGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCCT-CTTCTTCACGTGTCTCGTGACTCGG---GTTGCCCCA-G
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      320018 235 -   1764207 acctgaaat----actgacaatctg-cctttaagaaaaaaacgtgccaagccctgTTCCACTGCACCGCTGCGGTTTGTCCTTTTTAAGTGATTATGAGGACG-TTTCTTTTCTATCCTTGAGC--------AGCTGTTT---TAGGCCCTTGTCTGCTGATTCCAG-GGTCTGACCATCTTGAGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCCT-CTTCTTCACGTGTCTCGTGACTCGG---GTTGCCCCA-G
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      320995 234 -  16742782 acctgaaat----actgacaatctg-cctttaag-aaaaaatgtgccacaccctgTTCCACTGCACCACTGCGGTTTGTCCTTTTTAAGTGATTATGAGGACG-TTTCTTTTCTATCCTTGAGT--------AGCTGTTT---TAGGCCCTTGTCTGCTGATTCCAG-GGCCTGACCATCTTGAGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCCT-CTTCTTCACGTGTCTCGTGACTCGG---GTTGCCCCA-G
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90622039 234 -  91010382 ACCTGAAAT----ACTGACAATCTG-CCTTTAAG-AAAAAACGTGCCAAGCCCTGTTCCACTGCACCGCTGCGGTTTGTCCTTTTTAAGTGATTATGAGGACG-TTTCTTTTCTATCCTTGAGC--------AGCTGTTT---TAGGCCCTTGTCTGCTGATTCCAG-GGTCTGACCATCTTGAGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCCT-CTTCTTCACGTGTCTCCTGACTCCG---GTTGCCCCA-G
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      218690 234 -    438239 ACCTGAAAT----ACTGACAATCTG-CCTTTAAG-AAAAAACGTGCCAAACCCTGTTCCACTGCACCACTGCGGTTTGTCCTTTTTAAGTGATTATGAGGACG-TTTCTTTTCTATCCTTGAGC--------AGCTGTTT---TAGGCCCTTGTCTGCTGATTCCAG-GGTCTGACCATCTCGAGTTCTCCTCTGATT------TGAGCTGGGCCACATTCCCT-CTTCTTCACGTGTCTCGTGACTCGG---GTTGCCCCA-G
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      251406 238 -    514179 acctgaaatactgactgacaatctg-cctttaag-aaaaaacgtgccaagccctgttccaccgcaccgctgcggtttgtcctttttaagtgatattgaggacg-tttcttttctatccttgagc--------agctgttt---taggcctttgtctgctgattccag-ggtctgaccatcttgagTTCTGCTCTGATT------TGAGCTGGGCCACATTCCCT-CTTCTTCACGTGTCTCGTGACTTGG---GTTGCCCCA-G
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203913600 233 + 204313951 acctaaaat----actgacgatcca-cctttaag-aaaaaatatcccacaccctattccactcccctgctgcggcgtgtcattcgtgagtggttctgaggacg-tctcttttatcccctccaga--------agctgctt---taggggcttgtctgctgattccag-catctgACCCTCTTGAGTTCTGCTCTGACT------TGGGCTGGGCCCCACTCCCT-CTTCTTCACATGTCTTGTGATTTTG---GTCACTCCA--
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16063613 233 +  16417988 atctaaaat----actgacgatcca-cctttaag-aaaaaACATCCCACACCCCATTCCGCTCCCCCGCTGCAGCGCGTCATTCGTAAGTGGTTATGAGGCTg-tttcttttgtctccttgagc--------agctgctt---gaggtgcttgtctgctgattccag-cgtctgaccctcttgagttctgctgtgatt------tgggctgggccacatttcct-cttcttcacgtgtctcttgattttg---gttgctgCA--
i saiBol1.JH378155         C 0 C 0
s cebCap1.NW_016108158v1      151491 234 +    298490 acctaaaat----actgacgatccc-cctttaag-aaaaaatatcccgtaccccATTCCACTCCCCAGCTGCGGCGCGTCATTTGTAAGTGGTTATGAGGGCG-TTTCTTTCGTCTCCTTGAGC--------AGCTGCTT---TAGGTGCTTGTCTGCTGACTCCAG-CGTCTGACCCTCTCGAGTTCTGCTCTGATT------TGGGCTGGGCCCCATTCCCT-CTTCTTCACGTGTCTCGTGATTTTG---GTTGCTCCAG-
i cebCap1.NW_016108158v1   I 76 N 0
s otoGar3.GL873745           1922344 245 -   2165740 acctaaaat----atttactgtctgaactttagg-aaaaaa------------tgttccattccactgctcagatttatcctatttaattgactacaagtgtattttcctttaaattcttgaacatagtcatagctgtttaaaaaaatccttatctggtaatttcaatgggtggatcatcttgagggctccactgtttgatttatggattggccctattttcctgtttcttcatccatctagtgatgtggaatggtatcctg--
i otoGar3.GL873745         C 0 C 0

a score=363028.000000
s hg38.chr5_KI270793v1_alt    126058 56 +    126136 GACGTTGCGACCGGTGTCTTG-CCGGGGACTGTGCTCCGCTGCGGCCCCTGGTAGGC
s panTro5.chr5             181391220 56 - 181907262 GACGTTGCGCCCGGTGTCTTG-CCGGGGCCTGTGTTCCGCTGTGGCCCCTGGTGGGC
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110516 56 - 183735486 GACGTTGCGCCCGGTGTCTTG-CCGGGGCCTGTGTACCGCTGTGGCCCCTGGTAGGC
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204528 56 +    698298 GACGTTGCGACCGGTGTCTTG-CCGGGGCCTGTGTTCCGCTGTGGCCCCTGGTAGGC
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120621168 55 - 121039945 GACGTTG-GACTGGTGTCTTG-CTGGGGCCTGTGTTCCGCTGTGGCCCCTGGAAGGC
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179577044 56 - 180051392 GACGTTGGGACCGGTGTCTTG-CTGGGGCCTGTGTTCCGCTGTGGTCCCTGGAAGGC
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181310809 56 - 181584905 GACGTTGGGACCGGTGTCTTG-CTGGGGCCTGTGTTCCGCTGTGGTCCCTGGAAGGC
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      320253 56 -   1764207 GACGTTGGGACCGGTGTCTTG-CTGGGGCCTGTGTTCCGCTGTGGTCCCTGGATGGC
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      321229 56 -  16742782 GACGTTGGGACCGGTGTCTTG-CTGGGGCCTGTGTTCCGCTGTGGTCCCAGGAAGGC
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90622273 56 -  91010382 GACGTTGGGACTGGTGTCTTG-CTGGGGCCTGTGTTCCGCTGTGGTCCCTGGAAGGC
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      218924 56 -    438239 GACGTTGGGACCGGTGTCTTG-CTGGGGCCTGTGTTCCGCTGTGGTCCCTGGAAGGC
i manLeu1.NW_012110441v1   C 0 C 0
s colAng1.NW_012118799v1      251644 56 -    514179 GACGTTGGGACCGGTGTCTTG-CTGGGGCCTGTGTTCCGATGTGGCCCCTGGAAGGC
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203913833 43 + 204313951 -------------GTGCCTTGCCCCAGGCCTGTATCCCGCCGTGG-CCCGGGAAGGC
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16063846 42 +  16417988 -------------GTGTCTTG-CCCAGGCCTGTGTCCCGCCGTGG-CCCAGGAAGGC
i saiBol1.JH378155         C 0 C 0
s otoGar3.GL873745           1922589 55 -   2165740 gaccttgtgac-aacacactg-tagagccctgagctctgCAGGCTCCTTAGGGAGGC
i otoGar3.GL873745         C 0 N 0

a score=69969.000000
s hg38.chr5_KI270793v1_alt    126114 9 +    126136 GCCGCTGGG
s panTro5.chr5             181391276 9 - 181907262 GCCGCTGGG
i panTro5.chr5             C 0 C 0
s panPan2.chr5             183110572 9 - 183735486 GCCGCTGGG
i panPan2.chr5             C 0 C 0
s gorGor5.CYUI01015805v1      204584 9 +    698298 GCCGCTGGG
i gorGor5.CYUI01015805v1   C 0 C 0
s nomLeu3.chr6             120621223 9 - 121039945 GCCGCGGGG
i nomLeu3.chr6             C 0 C 0
s rheMac8.chr6             179577100 9 - 180051392 GCCACTGGG
i rheMac8.chr6             C 0 C 0
s macFas5.chr6             181310865 9 - 181584905 GCCACTGGG
i macFas5.chr6             C 0 C 0
s macNem1.NW_012012389v1      320309 9 -   1764207 GCCACTGGG
i macNem1.NW_012012389v1   C 0 C 0
s cerAty1.NW_012009470v1      321285 9 -  16742782 GCCGCTGGG
i cerAty1.NW_012009470v1   C 0 C 0
s chlSab2.chr4              90622329 9 -  91010382 GCCGCTGGG
i chlSab2.chr4             C 0 C 0
s manLeu1.NW_012110441v1      218980 9 -    438239 GCCGCTGGG
i manLeu1.NW_012110441v1   C 0 N 0
s colAng1.NW_012118799v1      251700 9 -    514179 GCCGCTGGG
i colAng1.NW_012118799v1   C 0 C 0
s calJac3.chr2             203913876 9 + 204313951 GTCGCTGGG
i calJac3.chr2             C 0 C 0
s saiBol1.JH378155          16063888 9 +  16417988 GTCACTGGG
i saiBol1.JH378155         C 0 C 0

a score=66642.000000
s hg38.chr5_KI270793v1_alt    126123 13 +    126136 TCTGCGGTAGCTG
s panTro5.chr5             181391285 13 - 181907262 TCTGCGGCAGCTG
i panTro5.chr5             C 0 N 0
s panPan2.chr5             183110581 13 - 183735486 TCTGCGGCAGCTG
i panPan2.chr5             C 0 N 0
s gorGor5.CYUI01015805v1      204593 13 +    698298 TCTGCGGTAGCTG
i gorGor5.CYUI01015805v1   C 0 N 0
s nomLeu3.chr6             120621232 13 - 121039945 TCTGCGGTGGCTG
i nomLeu3.chr6             C 0 N 0
s rheMac8.chr6             179577109 13 - 180051392 CCTCCGGTGGCTG
i rheMac8.chr6             C 0 N 0
s macFas5.chr6             181310874 13 - 181584905 CCTCCGGTGGCTG
i macFas5.chr6             C 0 N 0
s macNem1.NW_012012389v1      320318 13 -   1764207 CCTCCGGTGGCTG
i macNem1.NW_012012389v1   C 0 N 0
s cerAty1.NW_012009470v1      321294 13 -  16742782 CCTCCGGTGGCTG
i cerAty1.NW_012009470v1   C 0 N 0
s chlSab2.chr4              90622338 13 -  91010382 CCTCCGGTGGCTG
i chlSab2.chr4             C 0 N 0
s colAng1.NW_012118799v1      251709 13 -    514179 TCTCCGGTGGCTG
i colAng1.NW_012118799v1   C 0 N 0
s calJac3.chr2             203913885 13 + 204313951 TCTGCCGCTGCTG
i calJac3.chr2             C 0 N 0
s saiBol1.JH378155          16063897 13 +  16417988 TCTGCCACGGCTG
i saiBol1.JH378155         C 0 N 0

