##maf version=1 scoring=roast.v3.3
a score=3006235.000000
s hg38.chr6_KI270758v1_alt         0 5799 +     76752 [encoded data, 5876 characters]
s panTro5.chr6             142699807 5755 - 175400573 [encoded data, 5876 characters]
i panTro5.chr6             N 0 C 0
s gorGor5.CYUI01000036v1     2369104 5795 +   2807050 [encoded data, 5876 characters]
i gorGor5.CYUI01000036v1   N 0 C 0
s nomLeu3.chr1a             45662019 5809 - 122973662 [encoded data, 5876 characters]
i nomLeu3.chr1a            N 0 C 0

a score=35204.000000
s hg38.chr6_KI270758v1_alt      5799 39 +     76752 ttggccgggcacggtggctcatgcctgtaatctcagcac
s panTro5.chr6             142705562 39 - 175400573 ttggccaggcacggtggctcatgcctgtaatctcagcac
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2374899 39 +   2807050 ttggccaggcacggtggctcatgcctgtaatctcagcac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45667828 39 - 122973662 ttggctgggcacggtggctcatgcatgtaatctcagcac
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      670019 39 -   1936607 tTggctgggcacggtggctcatgcctgtaatctcagcac
i colAng1.NW_012115555v1   N 0 C 0

a score=444239.000000
s hg38.chr6_KI270758v1_alt      5838 353 +     76752 tttgggaggccaaggcaagcgga-tcac-gaggtcatgaggtcaagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattaattgggcgtggtggtgtgcacctgtagtctcagctactcgagaggctgaggcagaagaattgcttgaacctgggaggcggaggttgcagtgagccgagatcgcatcacggcactccagtctggcaacagagcgagactctgtctcaaaaaaaaaaaaaa----gtgtagacgctgg------------------ggctggcctcaaattcctggcctcaatttatccttcttccttggcctcccaaagtgctgggattacaggtataagccatcatac
s panTro5.chr6             142705601 354 - 175400573 tttgggaggccaaggcaagcgga-tcac-gaggtcatgaggtcaagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattaattgggcgtggtggtgtgcacctgtagtctcagctactcgagaggctgaggcagaagaattgcttgaacctgggaggcggaggttgcagtgagccgagatcgcatcactgcactccagtctggcaacagagcgagactctgtctcaaaaaaaaaaaaaa---agtgtagacgctgg------------------ggctggcctcaaattcctggcctcaatttatccttcctccttggcctcccaaagtgctgggattacaggtataagccatcatac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140857413 352 - 173848474 tttgggaggccaaggcaagcggagtcacggaggtcatgaggtcaagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgtgcacctgtagtctcagctactcgagaggctgaggcagaaggattgcttgaacctgggaggcggaggttgcagtgagccgagatcgcatcactgcactccagtctggcaacagagcgagactctgact---acaaaaaaaaaa----GTGTAGACGCTGG------------------ggctggcctcaaattcctggcctcaatttatccttcctccttggcctcccaaagtgctgagattacaggtataagccatcatac
i panPan2.chr6             N 0 C 0
s gorGor5.CYUI01000036v1     2374938 372 +   2807050 tttggaaggccaaggcaagcaga-tcaa-gaggtcatgagatcaagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcatggtggtatgcacctgtagtctcagctactcgggaggctgaggcagaagaattgcttgaacctgggaggcggaggttgcagtgagccaagatcgcatcactgcactccagtctggcaacagagtgagactctgtctcaaaaaaaaaaaaaa---aatgtagacgctggggtcttgctatgctgtcaggctggcctcaaattcctggcctcaacttatccttcctccttggcctcccaaagtgctgggattacaggtataagccatcatat
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45667867 375 - 122973662 tttgggaggtcaaagcaagtgga-tcac-taggtcatgagatcaagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagctgggcgtggtggtgtgcacctgtagtttcagctactcaggaggctgaggcagaagaattgcttgaacctgggaggcggaggttgcagtgagccgagatcgcatcactgcactccagtctggcaacagagcgagactctgtctcaaaaaaaaaaaaaaaaaaaagtagactctggggtcttgctatgctgtcaggctggcctcaaattcctggcctcaatttatccttcctccttggcctcccaaagtgctgggattacaggtataagccatcatac
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      670058 373 -   1936607 tttgggaggccgagacaaggaga-tcac-aaggtcatgaaatcaagaccatcctggtcaacatggtgaaaccctgtctctactaaaactacaaaaattagctgggcatggtggtgtgcacctgtagtcccagctactcgggaggctgaggcaggagaattgcttgaacctaggaggcagaggttgcagtgagccaagatcatgccactgcacttcagcctggtgacagagtgagtctctgtctcaaaaaaaaaaaaaa--aaaaGtagacactggggtcttgctgtgttgtcaagctggtctcaaattcctggcctcaatttatccttcatccttgacctcccgaagtgctgggattacaggtataagccatgatac
i colAng1.NW_012115555v1   C 0 C 0

a score=30690.000000
s hg38.chr6_KI270758v1_alt      6191 20 +     76752 ttggcTAagtt---tggcagttt
s panTro5.chr6             142705955 20 - 175400573 ttggcTAagtt---tggcagttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140857765 20 - 173848474 ttggcTAagtt---tggcagttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2375310 20 +   2807050 ttggcTAagtt---tggcagttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45668242 20 - 122973662 ttggcTAagtt---tggcagttt
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      670431 20 -   1936607 ttggctaagtt---tggcagttt
i colAng1.NW_012115555v1   C 0 C 0
s dasNov3.JH569424            435369 23 +    935526 ttggataggtcctatggaaaatt
i dasNov3.JH569424         N 0 C 0

a score=202278.000000
s hg38.chr6_KI270758v1_alt      6211 124 +     76752 cttgaaaaactaaa------catatattt-ccatatg-cccatgaattatatccca-gacatttataccagagaaatgaaaactcatgaactcatgctcatagaaaaaccttaaacacatgttcaaaacagcc
s panTro5.chr6             142705975 124 - 175400573 cttgaaaaactaaa------catatattt-ccatatg-cccatgaattatatccca-gacatttataccagagaaatgaaaactcatgaactcatgctcatagaaaaaccttaaacacatgttcaaaacagcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140857785 124 - 173848474 cttgaaaaactaaa------catatattt-ccatatg-cccatgaattatatccca-gacatttataccagagaaatgaaaactcatgaactcatgctcatagaaaaaccttaaacacatgttcaaaacagcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2375330 124 +   2807050 cttgaaaaactaaa------catatattt-ccatgtg-cgcatgaattatatccca-gacatttataccagagaaatgaaaactcatgaactcatgctcatggaaaaaccttaaacacatgttcaaaacagct
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45668262 124 - 122973662 cttgaaaaactaaa------catatattt-ccatatg-cccatgaattatatccca-gacatttataccagagaaatgaaaactcatgaactcatgctcatagaaaaaccttaaacacatgttcaaaacagct
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      670451 125 -   1936607 cttgaaaaactaaa------catttattt-ccatatgacccatgaattatatccca-gacatttataccagagaaatgaaaactcatgaactcatgctcgtagaaaaaccttacacacatgttcagaacagct
i colAng1.NW_012115555v1   C 0 C 0
s otoGar3.GL873550          15306902 125 -  18854210 cttaaaaaactaaacaaatgcatatattcaacacttgacccagtaattatattgcacaacatttatatcagagaaatgaa--------aactcacctttatacaaaaaccttacacgaatgttcataacagct
i otoGar3.GL873550         N 0 C 0
s dasNov3.JH569424            435392  87 +    935526 ctttaaaaactaaa------cacactcttaccacaggacccagaaatatgattgca-a---------------------------------------ttacacataaacctgacacaaatgttcctagcaact
i dasNov3.JH569424         C 0 C 0

a score=3163733.000000
s hg38.chr6_KI270758v1_alt      6335 1354 +     76752 ttatttatagtgaccccaaactagaaacagccaaaatgtccttcaataggcaaatagttaagcaaactg-----tgctgcatttagaccatggaatactacttagcaataaaaaaaaaaaagattgttgatatatgcagcagcttggatggatctcatgggtattatgctaagtgaaaa---------acaccag----------tcacatactgcatgattccatttaactagtattttcaaaatgacactattctagagattaatagcaaagaaattagtggttttaagttgttaaggtgattgtgt-----ggggggaatttggctataaaggga-agcatgatgaagatctctgtgat-atggaatagctctgtgcttgattgtggtggtggttacatgaatctacaaatgtgataagacatatgcataaaactatacatacacattgtatcaaggt-attttcttggttttgctactgtgctataattacttaaaatataaacatttggagaaactgggtgaaggcgtatgcagaatgtctctatactgtctttgcaatttcccctgaatctataattattttaaaataaaaaAAtattaa--aatggctttcttgctgaaatcccaaac-cccagaataccaaatgctggcaaggatatagaacaacagggactctcattcgttgctggtaggaatgcaaaatgatacagccattttggaagatattctagttgtttcttacaaagctaaacatactcttaccatatgatccagcaattgcccttctatgtatttatccaa---agtggaaaacttgtgtctgcacaaacatctgttcatggatgtttatagcagctttattcataattgccaaaaattagaagcaaccaagatgtccttcaatagattaatgggtaaataaaccatagtacatttatacaatggagtattatttaacattaaagaaaaataagctatcaagctatgacaatatacgcaggaaacctgtatgcatatggctaagcaaaagaatctcatctgaaaaagctctatgctgtatgattacaagtatgtgacattctgaaaaaggcaa---aacaat----agtaaatagctcagagaatgccaatggctcagagggaggaaggaag-gatgagtagatggagcct-gggtcatttttagatcagtgaagctattttgtttaatcctgtaatggtggatatatgatattatgtatttgtcagaa---cccatataactgtgtaatacag--agtgaaccctcgtat-aactatgaattttagttaataataattattagtattggttcatcaattgta-acaagtgtaccacattaatacaggatgttaagcattgtagaaactgg----gggtgggggag
s panTro5.chr6             142706099 1352 - 175400573 ttatttatagtgaccccaaactagaaacagccaaaatgtccttcaataggcaaatagttaagcaaactg-----tgctgcatttagaccatggaatactacttagcaataaaaaaaaaaa-gattgtcgatatatgcagcagcttggatggatctcatgggtattatgctaagtgaaaa---------acaccag----------tcacatactgcgtgattctatttaactagtattttcaaaatgacactattctagagattaatagcaaagaaattagtggttttaagttgttaaggtgattgtgt-----ggggggaatttggctataaaggga-agcatgacgaagatctctgtgat-atggaatagctctgtgcttcattgtggtggtggttacatgaatctacaaatgtgataagacatatgcataaaactatacatacacattgtatcaaggt-attttcttggttttgctactatgctataattacttaaaatataaacatttggagaaactgggtgaaggcgtatgcagaatgtctctatactgtctttgcaatttcccatgaatctataattattttaaaataaaaaA-tattaa--aatggctttcttgttgatatcccaaac-cccagaataccaaatgctggcaaggatatagaacaacagggactctcattcattgctggtaggaatgcaaaatgatacagccattttggaagatattctagttgtttcttacaaagctaaacatactcttaccatatgatccagcaattgcacttctatgtatttatccaa---aatggaaaacttatgtctgcacaaacatctgttcatggatgtttatagcagctttattcataattgccaaaaattagaagcaaccaagatgtccttcagtagactaatgggtaaataaaccatagtacatttatgcaatggagtattatttaacattaaagaaaaataagctatcaagctatgataatatatgcaggaaacctgtatgcatatggctaaacaaaaaaatctcatctgaaaaagctctatactgtatgattacaagcatgtgacattctggaaaaggcaa---aataat----agtaaatagctcagagaatgccagtggttcagagggaggagggaag-gatgagtagatggagcct-ggggcatttttagatcagtgaagctattttgtatgatcctgtaatggtggatatatgatattatgtatttgtcagaa---cccatataactgtgtaatacag--agtgaacccttgtat-aactatgaactttagttaataataattaacagtattggttcatcagttgta-acaagtgttccacattaatacaggatgttaagcattgtagaaactgg----ggatgggggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140857909 1350 - 173848474 ttatttatagtgaccccaaactagaaacagccaaaatgtccttcaacaggcaaatagttcagcaaactg-----tgctgcatttagaccatggaatactacttagcaataaaaaaaaa---gattgttgatatatgcagcagcttggatggatctcatgggtattatgctaagtgaaaa---------acaccag----------tcacatactgcgtgattctatttaactagtattttcaaaatgacactattctagagattaatagcaaagaaattagtggttttaagttgttaaggtgattgtgt-----ggggggaatttggctataaaggga-agcatgacgaagatctctgtgat-atggaatagctctgtgcttcattgtggtggtggttacatgaatctacaaatgtgataagacatatgcataaaactatacatacacattgtatcaaggt-attttcttggttttgctactatgctataattacttaaaatataaacatttggagaaactgggtgaaggcgtatgcagaatgtctctatactgtctttgcaatttcccatgaatctataattattttaaaataaaaaA-tattaa--aatggctttcttgttgatatcccaaac-cccagaataccaaatgctggcaaggatatagaacaacagggactctcattcattgctggtaggaatgcaaaatgatacagccattttggaagatattctagttgtttcttacaaagctaaacatactcttaccatatgatccagcaattgcacttctatgtatttatccaa---aatggaaaacttatgtctgcacaaacatctgttcatggatgtttatagcagctttattcataattgccaaaaattagaagcaaccaagatgtccttcagtagactaatgggtaaataaaccatagtacatttatgcaatggagtattatttaacattaaagaaaaataagctatcaagctatgataatatatgcaggaaacctgtatgcatatggctaaacaaaaaaatctcatctgaaaaagctctatactgtatgattacaagcatgtgacattctggaaaaggcaa---aataat----agtaaatagctcagagaatgccagtggttcagagggaggagggaag-gatgagtagatggagcct-ggggcatttttagatcagtgaagctattttgtatgatcctgtaatggtggatatatgatattatgtatttgtcagaa---cccatataactgtgtaatacag--agtgaacccttgtat-aactatgaactttagttaataataattaacagtattggttcatcagttgta-acaagtgttccacattaatacaggatgttaagcattgtagaaactgg----ggatgggggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2375454 1353 +   2807050 ttatttatagtgaccccaaactagaaacagccaaaatgtccttcaataggcaaatagttaagcaaactg-----tgctgcattttgaccatggaatactacctagcaataaagaaaaaaaagattgtcgatatatgcagcagcttggatggatctcatgggtattatgctaagtgaaaa---------acaccag----------tcacatactgcatgattccatttaactagtattttccaaatgacactattctagagattaatagcaaagaaattagtggttttaagttgttaaggtgattgtgt------gggggaatttggctataaaggga-agcatgatgaagatctctgtgat-atggaatagctctgtgcttgattgtggtggtggttacatgaatctacaaatgtgataagacatatgcataaaactatacatacacattgtatcaaggt-attttcttggttttgctactgtgctataattacttaaaatataaacatttggagaaactgggtgaaggcgtatgcagaatgtctctatactgtctttgcaatttcccatgaatctataattattttaaaataaaaaAAtattaa--aatggctttcttgctgaaatcccaaac-cccagaataccaaatgctagcaaggatatagaacaacagggactctcattcattgctggtaggaatgcaaaatgatacagccattttggaaaatattctagttgtttcttacaaagctaaacatactcttaccatatgatccagcaattgcacttctatgtatttatccaa---agtggaaaacttgtgtttgcacaaacatctgttcatggatgtttatagcagctttattcataattgccaaaaattagaagcaaccaagatgtccttcaatagattaatgggtaaataaaccatagtacatttatacaatggagtattatttaacattaaagaaaaataagctatcaagctatgacaatatacgcaggaaacctgtatgcatatggctaagcaaaagaatctcatctgaaaaagctctatactgtatgattacaagtatgtgacattctgaaaaaggcaa---aacagt----agtaaatagctcagagaataccaatggttcagagggaggaaggaag-gatgagtagatggagcct-gggtcatttttagatcagtgaagctattttgtttaatcctgtaatggtggatatatgatattacgtatttgtcagaa---cccatataactgtgtaatacag--agtgaaccttcgtat-aactatgaattttagttaataatatttattagtattggttcatcaattgta-acaagtgtaccacattaatacaggatgttaagcattgtagaaactgg----gggtgggggag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45668386 1349 - 122973662 ttatttatagtga-cccaaactagaaacagcaaaaatg---ttcaataggcaaatagttaaacaaactg-----tgctgcatttagaccatggaatactacttagcaataaaaaataaaa-gattgtcgatatatgcagcagcttggatggatctcatgggtattatgctaagtgaaaa---------acaccag----------tcacatactgcatgattccatttaactagtattttcaaaatgacactattctagcgattaatagcaaagaaattagtggttttaggttgttaaggtgattgtgt-----ggggggaatttggctataaaggga-agcatgacgaagatctctgtgat-atggaatagctctgtgcttgattgtggtggtgtttacatgaatctacaaatgtgataagacatatgcataaaactatacacacacattgtatcaaggt-attttcttggttttgctactgtgctataattacttaaaatataaacatttggagaaactgggtgaaggcatacgcagaatgtctctgcactgtctttgcaatttcccatgaatctataattattttaaaataagaaAGtattaa--aatggctttcttgctgaaatcccaaac-cccagaataccaaatgctggcaaggatatagaacaacagggactctcattcattgctggtaggaatgcaaaatgatacagccattttggaatatattctagtcatttcttacaaagctaaacatactcttaccatatgatccagcaattgcacttctatgtatttatccaa---aatggaaaacttatgtctgcacaaacatctgttcatggatgtttatagcagctttattcataattgccaaaaattagaagcaaccaagatgtccttcaataaactaatgggtaaataaaccatagtacatttatacaatggagtattatttaacattaaagaaaaataagctatgaagctatgacaatatatgcaggaaacctgtatgcatatggctgagcaaaaaaatctcatctgaaaaagctctatactgtatgattacaagcatgtgacattctggaaaaggcaa---aataat----agtaaatagctcagagaatgccaatggttcagagggaggagggaag-gatgagtagatggagcct-ggggcatttttagatcagtgaagctattttgtatgatcctgtaatggtggatatataatattatgtatttgtcagaa---cccatataactgtgtaatacag--agtgaaccctcgtat-aactatgaactttagttaataataattatcagtattggttcatcaattgta-acaagtgtaccacattaatacaggatgttaagcattgtagaaactgg----ggatggtggag
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012003702v1       41802 1334 +    463628 ttatttgtagtggccccagactagaaacagcaaaaatgtccttcaataggcaaatagttaagcaaactg-----tgctgcatttagaccatggaatactgcttagcaattaaaaaacca--gattgtcaatatatgcagcagcttggatggatctcaagggtattatgctaagtgaaaa---------atacccg----------tcacatactgcatgattccatttaactagtattttcaaaatgacagtattctggagattaatagagaactaattagtggttttaagttgttaaagtgattgtgt-----tgggggaatttggctagaaaggga-agcacgac-------------------aaatagctctgtgcttgattgtggtggtggtgacatgaatctacaaatgtgataatacatatgcataaaactatac--atacattgtattaaggt-attttcttggttttgctactgtgctatagttacttaaaatataaacatttggagaaactgggtgaaggcgcatgcagaatgtctctgtactgtctttgcaatttcctat-aatctacaattatttttaaataaaaaAATACTAA--AATGGCTTTCTTgctgaaatcccaaac-cccagaataccaaatgctggcaaggatgtagaac-acagggactcttgttcattgcttgtaggaatgcaaaatgatacagccattttggaagatattctagtcgtttcttacaaagctaaacatactcttaccatatgatccagcaattacacttctatgtatttatgcaa---aatggaaaacttatgtctgcacaaacatctgttcatggatgtttatagcagctttattcataattgccaaaaattagaagcaaccaagatgtccttcaatagattaatgggtaaataaaccatagtacatttatacaatggagtattatttaacattaaagaaaaataagctatcaagctatgataatatatgcaggaaatctgtatgcatatggctaatcaaaagaatcttatctgaaaaaactctatactgtatgattacaagtatgtgacattccagaaaaggcaa---aataat----agtaaatagctcagtgaatgccagtggttcagagggaggagggaag-gatgagtagatgcagcct-agggcatttttagatcagtgaagctattttgtatgatcctgtaatggtggatagatgatattatgtatttgtcagagggccgcatataactgtgtaatacag--agtgaaccctcgtat-aactatgaactttagttaataataattatcagtattggttcatcaatggtaaccaagtgtaccacattaatacaggatgttaagcattgtagaaactgg----ggatgggggag
i cerAty1.NW_012003702v1   N 0 C 0
s colAng1.NW_012115555v1      670576 1339 -   1936607 ttatttgtaatggccccagactagaaacagcaaaaatgtccttcaataggcaaatagttaagcaaactg-----tgctgcatttagaccatggaatactacttagcaattaaaaaacca--gattgtcgatatatgcagcagcttgcatggacctcaagggtgttatgctaagtgaaaa---------acaccag----------tcacatactgcatgattccatttaacgagtattttcaaaatgacagtattctggagattaatagagaagaaattagtggttttaagttgttaaggtgattgtg------tgggggaatttggctagaaaggga-agcacgatgaagatctctgtgat-atggaatagatctgtgcttgattgtggtggtggtgacatgaatctacaaatgtgataacacgtatgcataaaactatac--acacattgtattaaggt-attttcttggttttgctactgtgctatagttacttaaaatataaacatttggagaaactgggtgaaggcgcatgcagaatgtctctgtactgtctttgcaatttcccat-aatctacaattatttttaaataaacaaatattaa--aatggctttcttgctgaaatcccaaac-cccagaataccaaatattggcaaggatatagaacaacagggactctcgttcattgctcgtaggaatgcaaaatgatacaaccattttggaagatattctagtcgtttcttacaaagctaaacatactcttaccatatgatccagcaattgcacttctatgtatttatccaa---aatggaaaccttatgcctgcacaaacatctgttcatggatgtttatagcagttttattcataactaccaaaaattagaagcaaccaagatgtccttcaatagattaatgggtaaataaaccatagtacatttatacaatggaatattatttaacattaaagaaaaataagctatcaagctatgataatatatgcaggaaacctgtatgcatatggctaagc-aaagaatcttatctgaaaaagctctgtactgtatgattacaagtatgtgacattctggaaaaggcaa---aataat----agtaaatagctcagtgaatgccaatggttcagagagaggagggaag-gatgagtagatggagcct-ggggcatttttagatcagtgaagctgttttgtatgatcctgtaatggtggatagatgatattatgtatttgtcagaa---cccatataactgtgtaatacag--agtgaaccctcatat-aactatgaactttagttaataacaattatcagtgttggttcatcaatggta---------gcaacattaatacaggatgttaagcattgtagaaactgg----ggatgggggag
i colAng1.NW_012115555v1   C 0 C 0
s otoGar3.GL873550          15307027 1343 -  18854210 ttatgtatagtagcttcaaattagaaatagtcaaaatgtccttcaatgggcaaatagttaaacaaattgctgtatcacacatgcataccatggaatacta---agcaagaaaaaagagcg-cattgttgatacatgcaacagctcgcatggatctcaagggtatcttgctgagtgaacatgccagtctcaacaag----------tcacctactgcatgggtccatttatctaacattttcaaaatgacagtgtcacagagatgta----gaagaggttagtggctgtcagatgttagggtgatggtgtgaggaggtgagattgtgact--aaaggct-ggcccaggggagatctctgtggcaatggaatcactttgcacttgacaacagtggtggttactcaagtctacaaatgtgataaaacaggcacagaatgacacacacacatattgcaccaatatcagtttcctgattttgatattgtactacagttacttaaaatacaaacatttggagaagctgggtgatggggtgtgcagaatctctctgtactgtctttacaatttcctgtgaatctataattatttcaaaGTAAAAAC-----------TGAGTTTCtggctgaaatctaaaactctcacaacaccaaatgctgacaaggatgtagaacaacagggactcccatttgttgctggtgggaatgcaaaatggtactgacactttggaagacattctggcagtttctgacaaagctaaacatattcttactgtgtgatccagagattgcactcccaagtatttactcaaatgagtagaaaacttatgtctgcacaaaaacctgtacatgaatgtttatagcagttttattcataattgccaaaaattggaagccaccaagatattcttc--------aatgagtggat-acctgtggtacatcca--acacagagtattattcatcattaaagagaaataaagtatcacgctatgaaaagacatggaggaagcttaaatgcatattgc-aagtgaaagaaatgattccaaaaaagctgtatattatataatcacaattacatgacattctggaacaggcaa---aattatagacagtgagtagatcagtggtcaccaggagttcag-gggaggagagaag-ggtgattaggtggagcgtgggggcgtttttaggtcagtgaaactatttta-------ctgcaatggtggatacataacattaggcatttgtcaaaa---tgcagagacctgtataattcag--ggtgaaccctaatgt-aactattgtcttgagttaatactag-tatcagtactggttcatcaattgta-acaagtgtacccttctaatgca-gatgttaacaataggagaactagg----tggtgggtggt
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            435479 1229 +    935526 ttatttgtaataactcaaaattagacacattaaatatt---ttcaatg----------------aactg-----tggtacatctatagcaaggaaacctg---------------------gg---------------------------------gaggttattatgctgagtcaaaa---------gagccaatctcaaaagctcatatactgtgtaatttcatttatatatcattcttgaaatggcaaaattatagagatgga----gaacaggttcagaggcatgagaag--------------------atggagattctgaatataaaggggtatcatgagggagacttctgaagcaatggaagagttctggactt-attgtgctggtggctgtatagatctacaaatatgacaagatg---gcataggactatacacatatattgtagccatgtcagttcccaggtttccatattgtactaaagttacttaagatataaccatttggagaaactggttgaaag-gtacacagaacttctctgtactgtctctgcaataatctgagaatctgtcattacttcaaaatgaaGTTTTTTTAAAGAGTGACTTTCTGGTTAGGCTCACaaacattgacaacatcaaatactggcaagaatttgtagcaagagagattgtcattcattgttggtgggaaggcaaaatgataccaccatttcagaaga-agtcaggtcacttcttacaaagctaaatataggcatattacatgatccagcaat--cactctcaggtatttacccaaattaactgaaaaagtatatccttgcaaaaacctacaca-aaatgtttagagtagcattatttataagtgccagaaagtggaagcagccaaggtgtccttcaataggtgaatgaataaataaactgggttacatccacacaatggaatattattcagcaatcgaagaa----------------atgaaaatacatggatgaatcttacatgcacttttctaaatgtaagaaatcaatctgaaaaagttatatactgtctggttccaactttataacattctgaaaaaggcactttagaggc----aataaaaagatcagaggttgccagaggttcagaagaaggtgaggagagatgaataggtgaagcac-agagtaattttagggcagaaaaaccat---------------agtgccggatatatggcattatgcatttgtcaaaa---ccc-cagaactgtgaaacacaaacagtgaaactgaaagtaaaccattgatgtcagttaagaataa----------tggttta-caattata-acaa----acc-------tgcaaagtgttaatgataggaaaaactaggcgcgagtaggggag
i dasNov3.JH569424         C 0 I 83

a score=100236.000000
s hg38.chr6_KI270758v1_alt      7689 66 +     76752 ctc-----------tgtatacaatttctgcaatttttctgttagcttaaaacagctctaaaaataaaagtctattaa
s panTro5.chr6             142707451 66 - 175400573 ctc-----------tctatacattttctgcaatttttctgttaacttaaaacagctctaaaaataaaagtctattaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859259 66 - 173848474 ctc-----------tgtatacattttctgcaatttttctgttaacttaaaacagctctaaaaataaaagtctattaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2376807 66 +   2807050 ctc-----------tgtatacaatttctgcgatttttctgttagcttaaaacagctctaaaaataaaagtctattaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45669735 66 - 122973662 ctc-----------tctatacactttctgcaatttttctgttgacttaaaacagctctaaaaataaaagtctattaa
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012003702v1       43136 60 +    463628 --c-----------tctgtataatttctgcaa-ttttctgttaattt-aaacagctctaaaa--taaagtctattaa
i cerAty1.NW_012003702v1   C 0 C 0
s colAng1.NW_012115555v1      671915 66 -   1936607 ctc-----------tctatatactttctgcaatttttctgttaatttaaaacagctctaaaaataaaagtgtattaa
i colAng1.NW_012115555v1   C 0 C 0
s otoGar3.GL873550          15308370 55 -  18854210 tttagggaagggggtgtatgaaaactctgcactttctctg-aagttt---------------------gtctataaa
i otoGar3.GL873550         C 0 I 274
e dasNov3.JH569424            436708 83 +    935526 I

a score=12819.000000
s hg38.chr6_KI270758v1_alt      7755 16 +     76752 AATGGT--TTTCCttttt
s panTro5.chr6             142707517 16 - 175400573 AATGGT--TTTCCttttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859325 12 - 173848474 AATGGt--tttcct----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2376873 16 +   2807050 AATGGT--TTTCCttttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45669801 16 - 122973662 AATGGt--tttccttttt
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012003702v1       43196 17 +    463628 ATTAGttctttctttct-
i cerAty1.NW_012003702v1   C 0 I 4
s colAng1.NW_012115555v1      671981 15 -   1936607 AATTGT--TTCCtttct-
i colAng1.NW_012115555v1   C 0 C 0
e otoGar3.GL873550          15308425 274 -  18854210 I
e dasNov3.JH569424            436708 83 +    935526 I

a score=8091.000000
s hg38.chr6_KI270758v1_alt      7771 5 +     76752 ttttt
s panTro5.chr6             142707533 5 - 175400573 ttttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2376889 5 +   2807050 ttttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45669817 5 - 122973662 ttttt
i nomLeu3.chr1a            C 0 C 0
s cerAty1.NW_012003702v1       43217 5 +    463628 ctttt
i cerAty1.NW_012003702v1   I 4 C 0
s chlSab2.chr17             39621395 5 +  71996105 tttct
i chlSab2.chr17            N 0 C 0
s colAng1.NW_012115555v1      671996 5 -   1936607 ttttt
i colAng1.NW_012115555v1   C 0 C 0
e otoGar3.GL873550          15308425 274 -  18854210 I
e dasNov3.JH569424            436708 83 +    935526 I
e panPan2.chr6             140859337 0 - 173848474 C

a score=9338.000000
s hg38.chr6_KI270758v1_alt      7776 4 +     76752 tttt
s panTro5.chr6             142707538 4 - 175400573 tttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2376894 4 +   2807050 tttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45669822 4 - 122973662 tttt
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012013344v1      170777 4 +    407600 tttt
i macNem1.NW_012013344v1   N 0 C 0
s cerAty1.NW_012003702v1       43222 4 +    463628 tttt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39621400 4 +  71996105 tttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672001 4 -   1936607 tctt
i colAng1.NW_012115555v1   C 0 C 0
e otoGar3.GL873550          15308425 274 -  18854210 I
e dasNov3.JH569424            436708 83 +    935526 I
e panPan2.chr6             140859337 0 - 173848474 C

a score=7114.000000
s hg38.chr6_KI270758v1_alt      7780 4 +     76752 tttt
s panTro5.chr6             142707542 4 - 175400573 tttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2376898 4 +   2807050 tttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45669826 2 - 122973662 tt--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294256 4 - 172585720 tttc
i rheMac8.chr4             N 0 C 0
s macNem1.NW_012013344v1      170781 4 +    407600 tttt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       43226 4 +    463628 tttt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39621404 4 +  71996105 tttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672005 4 -   1936607 tttt
i colAng1.NW_012115555v1   C 0 C 0
e otoGar3.GL873550          15308425 274 -  18854210 I
e dasNov3.JH569424            436708 83 +    935526 I
e panPan2.chr6             140859337 0 - 173848474 C

a score=406057.000000
s hg38.chr6_KI270758v1_alt      7784 103 +     76752 -tttt-cttttttttgagatggagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctc-ggcttactgcaagctct--gcctcctgggttcacgccattt
s panTro5.chr6             142707546 102 - 175400573 -tttt--ttttttttgagacggagtcccgctctgtctcccaggctggagtgcagtggtgcgatctc-ggctcactgcaagctct--gcctctcgggttcactccattc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859337  98 - 173848474 -------ttttttttgagacggagtcccactctgtctcccaggctggagtgcagtggtgcgatctc-ggctcactgcaagctct--gcctctcgggttcactccattc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2376902 104 +   2807050 -tttttctttttttcgagatggagtctcgctctgtcacccaggctggagtgcagtggtgcgatctc-ggcttactgcaagctct--gcctcttgggttcacgccattt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45669828  98 - 122973662 -------ttttttttgaggcagagtcccactctgtctcccaggctggagtgcagtggtgtgatctc-ggctcactgcaagctct--gcctctcgggttcacgccattc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294260 103 - 172585720 ttttt--ttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggccggatctc-agctcactgcaagctcc--gcctcccaggtgcccgtcattc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454580 103 + 170955103 ttttt--ttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggccggatctc-agctcactgcaagctcc--gcctcccaggtgcccgccattc
i macFas5.chr4             N 0 C 0
s macNem1.NW_012013344v1      170785 103 +    407600 ttttt--ttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggccggatctc-agctcactgcaagctcc--gcctcccaggtgcccgccattc
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       43230 104 +    463628 ttttt--ttttttttgaaacagagtcttgctctgtcgccccggctggagtgcagtggtgagatctcgggctaactgcaaggctctggcctccc--gttcatgccattc
i cerAty1.NW_012003702v1   C 0 I 103
s chlSab2.chr17             39621408 103 +  71996105 ttttt--ttttttttgacacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctc-ggctcactgcaagctgc--gcctcccaggtgcccgccattc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672009  99 -   1936607 ----t--ttttttttgagacagagtcttgctctgttgcccaggctggagtgcagtggtgcgatctc-ggctcactgcaagctct--gcctccagggttcacgccattc
i colAng1.NW_012115555v1   C 0 C 0
e otoGar3.GL873550          15308425 274 -  18854210 I
e dasNov3.JH569424            436708  83 +    935526 I

a score=343474.000000
s hg38.chr6_KI270758v1_alt      7887 103 +     76752 tcctgcctcaacttctcgagtagctgggactacaggcacccgccaccacacccggctaattttttgttttttt--ttttttaatagagacggggtttcaccatgt
s panTro5.chr6             142707648  97 - 175400573 tcctgcctcagcctctcgagtagctgggactacaggcgcccttcaccacatccggctaattttttgtattttt--------agtagagacggggtttcaccgtgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859435  98 - 173848474 tcctgcctcagcctctcgagtagctgggactacaggcgcccgccaccacatccagctaattttttgttatttt-------tagtagagacggggtttcaccgtgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377006 105 +   2807050 tcctgcctcaacttctcgagtagctgggactacaggcacccgccaccacacccggctaattttttgtttgtttttttttttagtagagacggggtttcaccatgt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45669926  97 - 122973662 tcccgcctcagcctctcgagtagctgggactacaggtgcccgccaccacacccggctaattttttgtattttt--------agtagaaacggggtttcaccgtgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294363  97 - 172585720 tcctgcctcagcctctcgagtagctgggactacaggcgcccgccacctcacctggctaagtttctgtattttt--------agtagagacagagtttcaccgtgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454683  97 + 170955103 tcctgcctcagcctctcgagtagctgggactacaggcgcccgccacctcacctggctaagtttttgtattttt--------agtagagacagagtttcaccgtgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      170888  97 +    407600 tcctgcctcagcctcgcgagtagctgggactacaggcgcccgccacctaacctggctaagtttttgtattttt--------agtagagacagagtttcactgtgt
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621511  97 +  71996105 tcctgcctcagcctcccgagtagctgggactgcaggcgcccgccacctcacctggctaagtttttgtattttt--------agtagagacagggtttcaccgtgt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672108  97 -   1936607 tcctgcctcagcctcccaagtagcttggactacaggtgcccgccaccacgcccggctaattttttgtattttt--------agtagagacggggtttcacggtgt
i colAng1.NW_012115555v1   C 0 C 0
e cerAty1.NW_012003702v1       43334 103 +    463628 I
e otoGar3.GL873550          15308425 274 -  18854210 I
e dasNov3.JH569424            436708  83 +    935526 I

a score=312257.000000
s hg38.chr6_KI270758v1_alt      7990 73 +     76752 tagccaggatggtct---cgatctcctgacctcgt-gatccgcccgcctcggcctcccaaagtgctgggattacagg
s panTro5.chr6             142707745 73 - 175400573 tagccaggatggtct---caatctcctgacctcgt-gatctgcccgcctcaacctcccaaagtgctgggattacagg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859533 73 - 173848474 tagccaggatggtct---caatctcctgacctcgt-gatctgcccgcctcaacctcccaaagtgctgggattacagg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377111 73 +   2807050 tagccaggatggtct---cgatctcctgacctcgt-gatccgcccgcctcggcctcccaaagtgctgggattacagg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670023 73 - 122973662 tagccaggatggtct---caatctcctgacctcgt-gatccacccactttgacctcccaaagtgctaggattacagg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294460 73 - 172585720 tagccaggatggtct---caatctcctgatctcgt-gatcctcccacctcggcctcccaaagtgctgggattacagg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454780 73 + 170955103 tagccaggatggtct---cgatctcctgatctcgt-gatcctcccacctcggcctcccagagtgctgggattgcagg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      170985 73 +    407600 tagccaggatggtct---ccatctcctgatcttgt-gatcctcccacctcggcctcccagagtgctgggattgcagg
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       43437 76 +    463628 ttgccaggatggtctcgccaattcctggatctcgtggatcctcccaccttgg-ctcccaaagtgctgggattacggg
i cerAty1.NW_012003702v1   I 103 I 31
s chlSab2.chr17             39621608 73 +  71996105 tagccaggatggtct---cgatctcctgatctcgt-gatcctcccgcctcggcctcccaaagtgctgagattacagg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672205 70 -   1936607 tagccaggatgatct---cgatct---gatctcgt-gatcctcccacctcggcctcacaaagtgctgggattacagg
i colAng1.NW_012115555v1   C 0 C 0
e otoGar3.GL873550          15308425 274 -  18854210 I
e dasNov3.JH569424            436708 83 +    935526 I

a score=50161.000000
s hg38.chr6_KI270758v1_alt      8063 20 +     76752 cgtgagc-caccgcgcctggc
s panTro5.chr6             142707818 20 - 175400573 cgtgagc-caccgtgcccATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859606 20 - 173848474 cgtgagc-caccgtgcccATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377184 20 +   2807050 cgtgagc-caccgcgcctggc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670096 20 - 122973662 tgtgagc-caccgtgcccagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294533 21 - 172585720 cgtgattacaccatgcctggt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454853 21 + 170955103 cgtgattacaccgtgcccggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171058 21 +    407600 cgtgattacaccctgcccggc
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621681 21 +  71996105 catgattacaccgtgcccggc
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672275 21 -   1936607 cgtgattacaccgggcccagc
i colAng1.NW_012115555v1   C 0 C 0
e cerAty1.NW_012003702v1       43513 31 +    463628 I
e otoGar3.GL873550          15308425 274 -  18854210 I
e dasNov3.JH569424            436708 83 +    935526 I

a score=6228.000000
s hg38.chr6_KI270758v1_alt      8083 1 +     76752 c
s panTro5.chr6             142707838 1 - 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859626 1 - 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377204 1 +   2807050 c
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670116 1 - 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294554 1 - 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454874 1 + 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171079 1 +    407600 c
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621702 1 +  71996105 c
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672296 1 -   1936607 c
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            170694 1 +   1154217 C
i saiBol1.JH378315         N 0 C 0
s otoGar3.GL873550          15308699 1 -  18854210 T
i otoGar3.GL873550         I 274 C 0
s canFam3.chr12             70357679 1 -  72498081 C
i canFam3.chr12            N 0 C 0
e cerAty1.NW_012003702v1       43513 31 +    463628 I
e dasNov3.JH569424            436708 83 +    935526 I

a score=10470.000000
s hg38.chr6_KI270758v1_alt      8084 1 +     76752 -A
s panTro5.chr6             142707839 1 - 175400573 -A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859627 1 - 173848474 -A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377205 1 +   2807050 -A
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670117 1 - 122973662 -A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294555 1 - 172585720 -A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454875 1 + 170955103 -A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171080 1 +    407600 -A
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621703 1 +  71996105 -A
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672297 1 -   1936607 -A
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138612964 1 - 171630274 -a
i calJac3.chr4             N 0 C 0
s saiBol1.JH378315            170695 1 +   1154217 -A
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      239922 1 +    446445 -A
i aotNan1.NW_018508875v1   N 0 C 0
s proCoq1.NW_012150019v1       74815 1 +   1371726 -A
i proCoq1.NW_012150019v1   N 0 C 0
s otoGar3.GL873550          15308700 1 -  18854210 -A
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70357680 2 -  72498081 AA
i canFam3.chr12            C 0 C 0
e cerAty1.NW_012003702v1       43513 31 +    463628 I
e dasNov3.JH569424            436708 83 +    935526 I

a score=39260.000000
s hg38.chr6_KI270758v1_alt      8085 5 +     76752 -AAAAC
s panTro5.chr6             142707840 5 - 175400573 -AAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859628 5 - 173848474 -AAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377206 5 +   2807050 -AAAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670118 5 - 122973662 -AAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294556 5 - 172585720 -AAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454876 5 + 170955103 -AAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171081 5 +    407600 -AAAAT
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621704 5 +  71996105 -AAAAT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672298 5 -   1936607 -AAAAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138612965 5 - 171630274 -aAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170696 5 +   1154217 -AAAAT
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      239923 5 +    446445 -AAAAT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       74816 5 +   1371726 -AAAAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15308701 5 -  18854210 -AAAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70357682 4 -  72498081 -AAAA-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            436791 5 +    935526 AAAAA-
i dasNov3.JH569424         I 83 C 0
e cerAty1.NW_012003702v1       43513 31 +    463628 I

a score=17216.000000
s hg38.chr6_KI270758v1_alt      8090 3 +     76752 -GGT
s panTro5.chr6             142707845 3 - 175400573 -GAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859633 3 - 173848474 -GAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377211 3 +   2807050 -GGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670123 3 - 122973662 -GGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294561 3 - 172585720 -GGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454881 3 + 170955103 -TGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171086 3 +    407600 -GGT
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621709 3 +  71996105 -GGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672303 3 -   1936607 -GGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138612970 3 - 171630274 -GGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170701 3 +   1154217 -GGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997642 3 +  15232693 -GGT
i cebCap1.NW_016107339v1   N 0 C 0
s aotNan1.NW_018508875v1      239928 3 +    446445 -GGT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       74821 3 +   1371726 -GGT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15308706 3 -  18854210 -CAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70357686 3 -  72498081 -TGT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            436796 3 +    935526 AGG-
i dasNov3.JH569424         C 0 C 0
e cerAty1.NW_012003702v1       43513 31 +    463628 I

a score=775366.000000
s hg38.chr6_KI270758v1_alt      8093 71 +     76752 TTTCTTACA-TGGTAGTATATGGGTTTA---CTTTTTGCTTTCTTAATCC-ATGCTTGTCT--AAGTTTTAGTGTATT
s panTro5.chr6             142707848 71 - 175400573 TTTCTTACA-TGGTAGCATACGGGTTTA---CTTTTTGCTTTCTTAATCC-ATACTTATCT--AAGTTGTAGTGTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859636 71 - 173848474 TTTCTTACA-TGGTAGCATACGGGTTTA---CTTTTTGCTTTCTTAATCC-ATACTTATCT--AAGTTGTAGTGTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377214 71 +   2807050 TTTCTTACA-TGGTAGTATATGGGTTTA---CTTTTTGCTTTCTTAATCC-ATGCTTGTCT--AAGTTTTAGTGTATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670126 71 - 122973662 TTTCTTACA-TGGTAATATATGGGTTTA---CTTTTTGCTTTCTTAATCC-ATACTTGTCT--AAGTTTTAGTGTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294564 71 - 172585720 TTTCTTACT-TGGTAGTATATGGGTTTA---CTTTTTGCTTTCTTAATCC-ATGCTTGTCT--AAGTTTTAGTGTATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454884 71 + 170955103 TTTCTTACA-TGGTAGTATATGGGTTTA---CTTTTTGCTTTCTTAATCC-GTGCTTGTCT--AAGTTTTGGTGTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171089 71 +    407600 TTTCTTACA-TGGTAGTATATGGGTTTA---CTTTTTGCTTTCTTAATCC-GTGCTTGTCT--AAGTTTTAGTGTATT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       43544 77 +    463628 TTCCTTACATTGGTAGTATATGGTTTGGGGCTTTTTTGCTTTCTTAATCC-ATGGTTGTCTTAAGGTTTTAGTGTATT
i cerAty1.NW_012003702v1   I 31 I 566
s chlSab2.chr17             39621712 71 +  71996105 TTTCTTACA-TGGTAGTATATGGGTTTA---CTTTTTGCTTTCTTAATCC-GTGCTTGTCT--AAGTTTTAGTGTATT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672306 71 -   1936607 TTTCTTACA-TGGTAGTATTTGGGTTTA---CTTTTTGCTTTCTTAATCC-ATGCTTGTCT--AAGTTGTAGTGTATT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138612973 71 - 171630274 TTTCTGACA-TGGTAGTATATGGGTTTG---CTTTTTGCTTTTGTATTCC-GTACTTGTCT--GAGTTTTAGTGTGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170704 71 +   1154217 TTTCTTACT-TGGTAGTATATGGGTTTG---CTTTTTGCTTTTGTATTCC-ACACTTGTCT--GAGTTTTAGTGTATT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997645 71 +  15232693 TTTCTTACT-TTGTAGTATATGGGTTTG---CTTTTTGCTTTTGTATTCC-ACACTTGTCT--GAGTTTTAGTGTATT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      239931 71 +    446445 TTTCTTACA-TGGTAGTATATGCATTTG---CTTTTTACTTTTGTATTCC-AGACTTGTCT--GAGTTTTAGTGTATT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       74824 72 +   1371726 TTTCTTATA-TGGGAGAATATGGGTTTA---ATTTTTGCTTTTTTTATCCCATGCTTGTCT--GAGTTTTAGTGTATT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15308709 61 -  18854210 TTTCTCATA-TTGGAGAATATGAGCTTA---CTTTTTGCTTTCTT------AT-----TCT--GAGTTTTACTGTATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70357689 66 -  72498081 CTTTTTATA-TGGGAGGTTGTAG--------ATGTTTTCTTTTTTATGCC-ACATATGTCT--GAGTTTTAGTGTATT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            436799 71 +    935526 TTTCTTACA-AGGCAAGACAGGAATTTA---GCTTTTGCTTTTTTATTCC-ATACTTGTCT--GCATTTTAGTATATT
i dasNov3.JH569424         C 0 C 0

a score=31720.000000
s hg38.chr6_KI270758v1_alt      8164 12 +     76752 CTCTG------TGTTAAG
s panTro5.chr6             142707919 12 - 175400573 CTCTG------TGTTAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859707 12 - 173848474 CTCTG------TGTTAAG
i panPan2.chr6             C 0 I 20
s gorGor5.CYUI01000036v1     2377285 12 +   2807050 CTCTG------TGTTAAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670197 12 - 122973662 CTCTG------TGTTAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294635 12 - 172585720 CTCTG------TGTTAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454955 12 + 170955103 CTCTG------TGCTAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171160 12 +    407600 CTCTG------TGTTAAG
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621783 12 +  71996105 CTCTG------TGTTAAG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672377 12 -   1936607 CTCTG------TGTTAAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613044 13 - 171630274 CTCTGTTGTGTTG-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170775  7 +   1154217 CTCTG------TG-----
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997716  7 +  15232693 CTCTG------TG-----
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240002 10 +    446445 CTCTG---TGTTG-----
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       74896  8 +   1371726 CTCTA-----TTG-----
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15308770 13 -  18854210 CTCTA-----TTGTTCAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70357755 12 -  72498081 CTCTA-----TTGCCAC-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            436870 12 +    935526 ATCAC------TGTAAAT
i dasNov3.JH569424         C 0 C 0
e cerAty1.NW_012003702v1       43621 566 +    463628 I

a score=445761.000000
s hg38.chr6_KI270758v1_alt      8176 61 +     76752 CTATTTATTTTAT----AATAAAGTTTGTAGTCATGTAAG--------AAAGACATTCATACCTATTCTACCA
s panTro5.chr6             142707931 61 - 175400573 CTATTTATTTTAT----AATAAAGTTTGTAGTCATGTAAG--------AAAGACTCTCGTACCTATTCTACCT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377297 61 +   2807050 CTATTTATTTTAT----AATAAAGTTTGTAGTCATGTAAG--------AAAGACATTCGTACCTATTCTACCG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670209 61 - 122973662 CTATTTATTTTAT----AATAAATTTTGTAGTCATGTAAG--------AAAGACACTTGTACCTATTCTACCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294647 61 - 172585720 CTATTTATTTTAT----AATAAAGTTTGTAGTCATGTAAG--------AAAGACACTCGTACCTATTCTACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138454967 61 + 170955103 CTGTTTATTTTAT----AATAAAGTTTGTAGTCATGTAAG--------AAAGACACTCGTACCTATTCTACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171172 61 +    407600 CTGTTTATTTTAT----AATAAAGTTTGTAGTCATGTAAG--------AAAGACACTCGTACCTATTCTAGCT
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621795 61 +  71996105 CTGTTTATTTTAT----AATAAAGTTTGTAGTCATGTAAG--------AAAGACACTCGTACCTATTCTACCT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672389 61 -   1936607 CTATTTATTTTAT----AATAAAGTTTGTAGTCATGTAAG--------AAAGACACTTGTACCTATTCTAGCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613057 65 - 171630274 ----TTATTTCAT----AATAAAATTTGTAGTCATGTAAGAAAGACACAAAGACACTCAAACCTATTCGACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170782 65 +   1154217 ----TTATTTTAT----AATAAAATTTGTAGTCATGTAAGAAAGACACAAAGACACTCAAACCTATTCTGCCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997723 65 +  15232693 ----TTATTTTAT----AATAAAATTTGTAGTCATGTAAGAAAGACACAAAGACACTCAAACCTATTCTACCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240012 65 +    446445 ----TTATTTTAT----AATAAAATTTGTAGTCATGTAACAAAGACACAAAGACACTCAAACCTATTAGACCT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       74904 58 +   1371726 ---TTTGCTTTAT----AATAAGAATTGTAGACATCTAAA--------AAGAACACTTGTGCCTATCCTACAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15308783 59 -  18854210 CTATTTATTTTAT----AATGAAAATAGCAGACA--TGAA--------AAAAACACTTTTGCCTATTCTACAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70357767 57 -  72498081 CTATTTATGGTA--------AAAAATGGGAGTTACATAAA--------AGAAACACCTATGACTATTTTCAAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            436882 68 +    935526 CTATCTATTTTATAAACAAAAAACACTGGAACCATGTTAAAAAA----AAAAACACT-ATGCTGATTCTGTCT
i dasNov3.JH569424         C 0 C 0
e cerAty1.NW_012003702v1       43621 566 +    463628 I
e panPan2.chr6             140859719 20 - 173848474 I

a score=291475.000000
s hg38.chr6_KI270758v1_alt      8237 28 +     76752 TCAGTAGTCTCAAGATTCTGCTTTGATT
s panTro5.chr6             142707992 28 - 175400573 TCAGTAGTCTCAAAATTCTTCTTTGATT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377358 28 +   2807050 TCAGTAGTCTCAAGATTCTGCTTTGATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670270 28 - 122973662 TCAGTAGTCTCAAGATTCTGCTTTGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294708 28 - 172585720 TCAATAGTCTCAAGATTCTGCTTTCATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455028 28 + 170955103 TCAATAGTCTCAAGATTCTGCTTTCATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171233 28 +    407600 TCAATAGTCTCAAGATTCTGCTTTCATT
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621856 28 +  71996105 TCAGTAGTCTCAAGATTCTGCTTTCATT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672450 28 -   1936607 TCAACAGTCTCAAGATTCTGCTTTCATT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613122 28 - 171630274 TCAGTAGTCTCAAGATCCTGCTTTGATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170847 28 +   1154217 TCAATAGTCTCAAGATTCTGCTATGATT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997788 28 +  15232693 TCAATATTCTCAAGATTCTGCTTTGATT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240077 28 +    446445 TCAATAGTCTCAAGATTCTGCTTTGATT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4428835 28 + 123392446 TCAATAGTCTCAAGATTCTGCTTTGATT
i micMur3.chr6             N 0 C 0
s proCoq1.NW_012150019v1       74962 28 +   1371726 TCAATAGTCTCAAGATTCTGCTTTGATC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15308842 28 -  18854210 TCAACATTCTCAAGATTCTGCTTTGGgg
i otoGar3.GL873550         C 0 I 267
s canFam3.chr12             70357824 22 -  72498081 -----TTTCTAAAGATG-TGCCTTGATT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            436950 28 +    935526 TAAATTCTCTCACAATTCTTCTCTGATT
i dasNov3.JH569424         C 0 C 0
e cerAty1.NW_012003702v1       43621 566 +    463628 I
e panPan2.chr6             140859719 20 - 173848474 I

a score=111392.000000
s hg38.chr6_KI270758v1_alt      8265 10 +     76752 CTCTGAACCA
s panTro5.chr6             142708020 10 - 175400573 CTCTGAACCA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377386 10 +   2807050 CTCTGAACCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670298 10 - 122973662 CTCTGAACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294736 10 - 172585720 CTCTGAACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455056 10 + 170955103 CTCTGAACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171261 10 +    407600 CTCTGAACCA
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621884 10 +  71996105 CTCTGAACCA
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672478 10 -   1936607 CTCTGAACCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613150 10 - 171630274 CTCTGAACCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170875 10 +   1154217 CTCTGAACCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997816 10 +  15232693 CCCTGAACCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240105 10 +    446445 CTCTGAACCA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4428863 10 + 123392446 CTCTAAACCA
i micMur3.chr6             C 0 I 254
s proCoq1.NW_012150019v1       74990 10 +   1371726 CTCTAAACCA
i proCoq1.NW_012150019v1   C 0 C 0
s canFam3.chr12             70357846 10 -  72498081 CTTTAAGCCA
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            436978  9 +    935526 -CTTAAACCA
i dasNov3.JH569424         C 0 C 0
e cerAty1.NW_012003702v1       43621 566 +    463628 I
e otoGar3.GL873550          15308870 267 -  18854210 I
e panPan2.chr6             140859719 20 - 173848474 I

a score=25846.000000
s hg38.chr6_KI270758v1_alt      8275 5 +     76752 ACAGT----
s panTro5.chr6             142708030 5 - 175400573 ACAGT----
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377396 5 +   2807050 ACAGT----
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670308 5 - 122973662 ACAGT----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294746 5 - 172585720 ACAGT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455066 5 + 170955103 ACAGT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171271 5 +    407600 ACAGT----
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621894 5 +  71996105 ACAGT----
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672488 5 -   1936607 ACAGT----
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613160 5 - 171630274 TCAGT----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170885 5 +   1154217 TCAGT----
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997826 5 +  15232693 TCAGT----
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240115 5 +    446445 TCAGT----
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       75000 5 +   1371726 GCAGT----
i proCoq1.NW_012150019v1   C 0 I 316
s canFam3.chr12             70357857 5 -  72498081 AGAAT----
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            436987 5 +    935526 ----TATCT
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4428873 254 + 123392446 I
e cerAty1.NW_012003702v1       43621 566 +    463628 I
e otoGar3.GL873550          15308870 267 -  18854210 I
e panPan2.chr6             140859719 20 - 173848474 I

a score=31741.000000
s hg38.chr6_KI270758v1_alt      8280 19 +     76752 AGAGAAACttt--------------------tttttttt
s panTro5.chr6             142708035 19 - 175400573 AGAGAAACttt--------------------tttttttt
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377401 19 +   2807050 AGAGAAACttt--------------------tttttttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670313 19 - 122973662 AGAGAAACttt--------------------tttttttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294751 19 - 172585720 AGAGAAACttc--------------------tttttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455071 19 + 170955103 AGAGAAACttc--------------------ttttcttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171276 23 +    407600 AGAGAAACTTC----------------ttttttttctct
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621899 39 +  71996105 AGAGAAACTTCtttttatttttcttttttttcttttttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672493 21 -   1936607 AGAGAAACttc------------------ttttttttct
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613165  9 - 171630274 AAAGACAC--t----------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170890 11 +   1154217 AAAGACACCtt----------------------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997831 11 +  15232693 AAAGACACCtt----------------------------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240120  9 +    446445 AAAGACAC--t----------------------------
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70357862 19 -  72498081 ACAGAAACTTG--------------------CTAGTTTT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            436992 19 +    935526 ATAGACATTTA--------------------CTATTTAT
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4428873 254 + 123392446 I
e proCoq1.NW_012150019v1       75005 316 +   1371726 I
e cerAty1.NW_012003702v1       43621 566 +    463628 I
e otoGar3.GL873550          15308870 267 -  18854210 I
e panPan2.chr6             140859719 20 - 173848474 I

a score=2152.000000
s hg38.chr6_KI270758v1_alt      8299 1 +     76752 t
s panTro5.chr6             142708054 1 - 175400573 t
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377420 1 +   2807050 t
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670332 1 - 122973662 t
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294770 1 - 172585720 t
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455090 1 + 170955103 t
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171299 1 +    407600 c
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621938 1 +  71996105 t
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672514 1 -   1936607 c
i colAng1.NW_012115555v1   C 0 C 0
s canFam3.chr12             70357881 1 -  72498081 T
i canFam3.chr12            C 0 I 941
e micMur3.chr6               4428873 254 + 123392446 I
e cebCap1.NW_016107339v1    13997842 0 +  15232693 C
e proCoq1.NW_012150019v1       75005 316 +   1371726 I
e aotNan1.NW_018508875v1      240129 0 +    446445 C
e calJac3.chr4             138613174 0 - 171630274 C
e saiBol1.JH378315            170901 0 +   1154217 C
e cerAty1.NW_012003702v1       43621 566 +    463628 I
e otoGar3.GL873550          15308870 267 -  18854210 I
e dasNov3.JH569424            437011 0 +    935526 C
e panPan2.chr6             140859719 20 - 173848474 I

a score=228914.000000
s hg38.chr6_KI270758v1_alt      8300 47 +     76752 ttttttttt----------gagacggagtctcagtctgttgccaggcaggagcgcag
s panTro5.chr6             142708055 57 - 175400573 tttttttttttttttttttgtgacagagtctcagtctgttgccaggcaggagcacag
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377421 51 +   2807050 ttttttttt------ttttgagacggagtctcagtctgttgccaggcaggagcgcag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670333 44 - 122973662 tttttt-------------gagactgagtctcagtctgttgccaggcaggagcgcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294771 54 - 172585720 tcttttttt---tttttttgagacggagtctcagtctgttgccgggcaggagcgcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455091 54 + 170955103 ttttttttt---tttttttgagacggagtctcagtctgttgccgggcagaagctcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171300 54 +    407600 ttttttttt---cttttttgagacggagtctcagtctgttgccgggcagaagcgcag
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621939 54 +  71996105 tcttttttt---tttttttgagacggagtctcagtctgttgctgggcaggagcgcag
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      672515 54 -   1936607 tctcttttt---tttttttgagacagagtctcagtctgttgccaggcaggagcgcag
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613174 47 - 171630274 ttttttttt----------gagttggagtcttgctgtgtcaccaggctggagtgcag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170901 47 +   1154217 ttttttttc----------gagatggagtcttgctgtgtcaccaggctggagtgcag
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997842 47 +  15232693 ttttttttt----------aagattaagccttgctgtgtcgtcaggctggagtgcag
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240129 47 +    446445 ttttttttt----------gacatggagtcttgctgtgtcaccaggctggagtgcag
i aotNan1.NW_018508875v1   C 0 C 0
e micMur3.chr6               4428873 254 + 123392446 I
e proCoq1.NW_012150019v1       75005 316 +   1371726 I
e canFam3.chr12             70357882 941 -  72498081 I
e cerAty1.NW_012003702v1       43621 566 +    463628 I
e otoGar3.GL873550          15308870 267 -  18854210 I
e dasNov3.JH569424            437011  0 +    935526 C
e panPan2.chr6             140859719 20 - 173848474 I

a score=155146.000000
s hg38.chr6_KI270758v1_alt      8347 24 +     76752 tggtgcgatctcggctcactgcaa
s panTro5.chr6             142708112 24 - 175400573 tggtgcgatctcggctcactgcaa
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377472 24 +   2807050 tggtgagatcttggctcactgcaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670377 24 - 122973662 tggtgcgatctcggctcactgcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294825 24 - 172585720 tggtgcgatctcagcttactgcaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455145 24 + 170955103 tggtgcaatctcagcttactgcaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171354 24 +    407600 tggtgcaatctcagcttactgcaa
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39621993 24 +  71996105 tggtgcgatctcagctcactgcaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42154 24 -    115496 tggtgcgatcttggcttactgcaa
i manLeu1.NW_012101600v1   N 0 C 0
s colAng1.NW_012115555v1      672569 24 -   1936607 tggtgcgatctcggcttactgcaa
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613221 24 - 171630274 tgacggaatctccactcactgcaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170948 24 +   1154217 tgatgcaatctctatgtactgcaa
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997889 24 +  15232693 taatgcaatctccactcactgcaa
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240176 24 +    446445 tgacacaatctccactcactgcaa
i aotNan1.NW_018508875v1   C 0 C 0
e micMur3.chr6               4428873 254 + 123392446 I
e proCoq1.NW_012150019v1       75005 316 +   1371726 I
e canFam3.chr12             70357882 941 -  72498081 I
e cerAty1.NW_012003702v1       43621 566 +    463628 I
e otoGar3.GL873550          15308870 267 -  18854210 I
e dasNov3.JH569424            437011  0 +    935526 C
e panPan2.chr6             140859719 20 - 173848474 I

a score=1796581.000000
s hg38.chr6_KI270758v1_alt      8371 216 +     76752 cctctgcctcccggattcaagagattctcctgcctcaacctccagagtagctgggattacaggcgcctatcaccacgcctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtcttgatttcctgaccttgtgatccgcccacctcggcctcccaaagtgctgg-attacaggcgtgagccaccgtgcccagcc
s panTro5.chr6             142708136 217 - 175400573 cctctgcctcccggattcaagctattctcctgcctcaacctcctgagtagctgggattacaggcgcctatcaccacacccggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtcttgatctcctgaccttgtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859739 216 - 173848474 Cctctgcctcccggattcaagctattctcctgcctcaacctcctgagtagctgggattacaggcgcctatcaccacacccggctaa-ttttgtatttttagtagagatggggtttcaccatgttggccaggatggtcttgatctcctgaccttgtgatccacccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcctggcc
i panPan2.chr6             I 20 C 0
s gorGor5.CYUI01000036v1     2377496 215 +   2807050 cctctgcctcccgga-tcaagagattctcctgcctcaacctccagagtagctgggattacaggcgcctatcaccacgcctggctaatttttgtatttttagtagagatggagtttcaccattttggccaggatggtcttgatttcctgaccttgtgatccgcccacctcggcctcccaaagtgctgg-attacaggcgtgagccaccgtgcccagcc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670401 217 - 122973662 cctctgcctcccggattcaagcaatactcctgcctcaacctcctgagtagctgggattacaggtgcctatcaccacacctggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatgatcttgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccactgggcccagcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139294849 217 - 172585720 cctctgcctcctggattcaagagattctcctgcctcaacctcctgagtagctgggattacaggcgcctatcaccacgcccggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtcttgatctcctgacttcgtgatccacctgcctcagccttccaaagtgctggaattacaggcgtgagccactgggcccagcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455169 217 + 170955103 cctctgcctcccggattcaagagattctcctgcctcaacctcctgagtagctgggattacaggcgcctatcaccacgcccggctaatttttgtagttttagtagagatggggtttcaccatgttgaccaggatggtcttgatctcctgacctcgtgatccacctgcctcagccttccaaagtgctggaattacaggcgtgagccactgggcccagcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171378 217 +    407600 cctctgcctcccggattcaagagattctcctgcctcaacctcctgagtagctgggattacaggcgcctatcaccacgcccggctaatttttgtagttttagtacagatggggtttcaccatgttgaccaggatgctcttgatctcctgacctcgtgatccacctgcctcagccttccaaagtgctggaattacaggcgtgagccactgggcccagcc
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39622017 217 +  71996105 cctctgcctcccggattcaagagattctcctgcctcaacctcctgagtagctgggattacaggcgcctatcaccacgcccggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtcttgatctcctgacctcgtgatccacctgcctcagcctcccaaagtgctggaattacaggcgtgagccactgggcccagcT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42178 211 -    115496 catctgcctcctagattcaagagattctcctgccccagcctcctgagtagctgggattacaagtgcctat------gcccagctaatttttgtatttttagtacagatggggtttcaccacgtaggccaggatggtcttgatctcctgacctcgtgatccacctgccccagcctcccaaagtgctgggattacaggcgtgagccactgggcccagcc
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      672593 211 -   1936607 cctctgcctcccagattcaagagattctcctgccccaacctcctgagcagctgggattacaagtgcctat------gcccagctaatttttgtatttttagtagagatggggtttcaccatgttgaccaggatggtcttgatctcctgacctcatgatccacctgcctcagcctaccaaagtgctgggattacaggcatgagccactgggcccagcc
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613245 216 - 171630274 actccccctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgagaatataggcacccaccaccacaccaggttaatttttatatttttagtagagatggcatttcaccatgttggccaggatggtctcgatctcctgacctcatgatccacccatctctgcctcccaaagtgctgggattacaggcgtgagccactgcg-ctcggc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            170972 217 +   1154217 cctccccctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgagattgcaggcacccaccaccacaccaggctaatttttgtatttttagtagagatggggtttcataatgttggccaggatggtctcgatctcctgacatcatgatccgcccatctcagcctctcaaagtgctgggattacaggcatgagccaccacgccccgcc
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13997913 217 +  15232693 cctccccctcctgggttcaagtgattctcctgcctcagcctcctgagtagctgagattgcaggcacccaccaccataccaggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctcctgaagtcatgatccgcccatctcagcctcccaaagtgctggaattacaggcgtgagccaccgcgccctgcc
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240200 217 +    446445 cctccccctcctgggttcaagtgattctcctgcctcagcctcctgagtacctgagattacaggcacccaccaccacaccaggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggatggtctcgatctcctgacctcatgatccgcccatctcagcctcccaaagtgctgggattacaggtatgggccaccgcgcccCACC
i aotNan1.NW_018508875v1   C 0 C 0
e micMur3.chr6               4428873 254 + 123392446 I
e proCoq1.NW_012150019v1       75005 316 +   1371726 I
e canFam3.chr12             70357882 941 -  72498081 I
e cerAty1.NW_012003702v1       43621 566 +    463628 I
e otoGar3.GL873550          15308870 267 -  18854210 I
e dasNov3.JH569424            437011   0 +    935526 C

a score=186213.000000
s hg38.chr6_KI270758v1_alt      8587 18 +     76752 GAGAAACTTCTTATTTAT
s panTro5.chr6             142708353 18 - 175400573 GAGAAACTTCTTATTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859955 18 - 173848474 GAGAAACTTCTTATTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377711 18 +   2807050 GAGAAACTTCTTATTTAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670618 18 - 122973662 GAGAAACTTCTTATTTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295066 18 - 172585720 GAGAAACTTCTTATTTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455386 18 + 170955103 GAGAAACTTCTTATTTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171595 18 +    407600 GAGAAACTTCTTATTTAT
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39622234 18 +  71996105 GAGAAACTTCTTATTTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42389 18 -    115496 GACAAACTTCTTATTTAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      672804 15 -   1936607 GAGAAA---TTTATTTAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613461 18 - 171630274 AAGAAACTTCTTATTTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171189 18 +   1154217 AAGAAACTTCTTATTTAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998130 18 +  15232693 AAGAAACTTCTTATTTAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240417 18 +    446445 AAGAAACTTCTTATTTAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4429127 18 + 123392446 GAGAATCTTGTTATTTAC
i micMur3.chr6             I 254 C 0
s otoGar3.GL873550          15309137 18 -  18854210 GAGAATCTTGTTATTTAC
i otoGar3.GL873550         I 267 C 0
e proCoq1.NW_012150019v1       75005 316 +   1371726 I
e canFam3.chr12             70357882 941 -  72498081 I
e cerAty1.NW_012003702v1       43621 566 +    463628 I
e dasNov3.JH569424            437011  0 +    935526 C

a score=334550.000000
s hg38.chr6_KI270758v1_alt      8605 38 +     76752 TAGTAAGGCTTAGAAGGTCATGATGCTTTGGTTTAT--CC
s panTro5.chr6             142708371 38 - 175400573 TAGTAAGGCTTAGAAGGTCATGATGCTTTGGTTTAT--CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140859973 38 - 173848474 TAGTAAGGCTTAGAAGGTCATGATGCTTTGGTTTAT--CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377729 38 +   2807050 TAGTAAGGCTTAGAAGGTCATGATGCTTTGGTTTAT--CC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670636 38 - 122973662 TAGTAAGGCTTAGAAGGTCATGATGCTTTGGTTTAT--CC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295084 38 - 172585720 TAGTAAATCTTAGAAGGTCATGATGCTTTGGTTTAC--CC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455404 38 + 170955103 TAGTAAATCTTAGAAGGTCATGATGCTTTGGTTTAT--CC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171613 38 +    407600 TAGTAAATCTTAGAAGGTCATGATGCTTTGGTTTAT--CC
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39622252 38 +  71996105 TAGTAAATCTTAGAAGGTCATGATGCTTTGGTTTAC--CC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42407 38 -    115496 TAGTAAATCTTAGAAGGTCATGATGTtttggtttat--ct
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      672819 38 -   1936607 TAGTAAATCTTAGAAGGTCATGATGCTTTGGTTTAT--CC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613479 38 - 171630274 TAGTAAGTCTTAGCAGGTCATGATGATTTGATTTAC--CC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171207 38 +   1154217 TAGTAAGTCTTAGCAGGTCATGATGCTTTGATTTAT--CC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998148 19 +  15232693 TAGTAAGTCTT-------------------ATTTAT--CC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240435 38 +    446445 TAGTAAGTCTTAGCAGGTCATGATGCTTTGATTTAT--CC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4429145 38 + 123392446 TAGTAAGTCTTATAACATCATGCTGCCTTGGTGTGTGT--
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550          15309155 36 -  18854210 TCATGAATCTTATAACGCCATGATGCTTTAGTTTGT----
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            437011 34 +    935526 TAGTAAGCTTTATAAAATCTTTCTGCCTTTGTTC------
i dasNov3.JH569424         C 0 C 0
e proCoq1.NW_012150019v1       75005 316 +   1371726 I
e canFam3.chr12             70357882 941 -  72498081 I
e cerAty1.NW_012003702v1       43621 566 +    463628 I

a score=687412.000000
s hg38.chr6_KI270758v1_alt      8643 54 +     76752 TTGTTTTGTTTAGCTTCTCTTAGATTTTT----ATCATCACTCTATAGAAATTTTGAG
s panTro5.chr6             142708409 55 - 175400573 TTGTTTTGTTTAGCTTCTCTTAGATTTTTT---ATCATCAGGCTATAGAAATTTTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860011 54 - 173848474 TTGTTTTGTTTAGCTTCTCTTAGATTTTT----ATCATCAGGCTATAGAAATTTTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377767 54 +   2807050 TTGTTTTGTTTAGCTTCTCTTAGATTTTT----ATCATCAGTCTACAGAAATTTTGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670674 54 - 122973662 TTGTTTTGTTTAGCTTCTCTTAGATTTTT----ATCATCAGGTTATAGAAATTTTGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295122 54 - 172585720 TTGTTTTGTTTAGTTTATCTTAGATTTTT----ATCACCAGGCTGTAGACATTTTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455442 54 + 170955103 TTGTTTTGTTTAGTTTATCTTAGATTTTT----ATCACCAGGCTGTAGACATTTTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171651 54 +    407600 TTGTTTTGTTTAGTTTATCTTAGATTTTT----ATCACCAGGCTGTAGACATTTTGAG
i macNem1.NW_012013344v1   C 0 C 0
s chlSab2.chr17             39622290 54 +  71996105 TTGTTTTGTTTAGTTTATCTTAGATTTTT----ATCACCAGGCTGTAGACATTTTGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42445 54 -    115496 ttgttttgtttagtttatcttagattTTT----ATCACCAGGCTGTAGACACTTTGAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      672857 54 -   1936607 TTGTTTTGTTTAGTTTATCTTAGATTTTT----ATCACCAGGCTGTAGACATTTTGAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613517 54 - 171630274 TTGTTTTGTTTAGCTTCTCCTAGATTTTT----ATCATCAGGCTGTAGAAATTTTGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171245 54 +   1154217 TTGTTTTGTTTAGCTTCTCCTAGATTTTT----ATCATCAGGCTGTAGAAATTTTGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998167 54 +  15232693 TTGTTTTGTTTAGCTTCTCCTAGATTTTT----ATCATCAAGCTGTAGAAATTTTGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240473 52 +    446445 TTG-TTTGTTTAGCTTC-CCTAGATTTTT----ATCATCAGACTGTAGAAATTTTTAG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4429183 54 + 123392446 TTGTTTTGTTTTGCTTCTCTTAGATTTTT----ATCATAAGGCTGTAGAAATTTTGAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       75321 54 +   1371726 TTGTTTTGTTTTGCTTCTCTTAGATTTTT----ATCATCAAGCTGTAGAAATTTTGAA
i proCoq1.NW_012150019v1   I 316 C 0
s otoGar3.GL873550          15309191 45 -  18854210 ---GTTTATGTCACTTCTA------TTTT----ATCATCAGGCTGTAGAAATTTTGAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70358823 51 -  72498081 ttgatttgt---gcatttctgGGATTTTT----ATCATCAGGTTATAAACATTTTGAG
i canFam3.chr12            I 941 I 1
s dasNov3.JH569424            437045 56 +    935526 -TGGCTTGTTTA-CTTCTCTTAGCTTTTATTTAATCACCAGTTTGTAGAAATTCTGAG
i dasNov3.JH569424         C 0 C 0
e cerAty1.NW_012003702v1       43621 566 +    463628 I

a score=903588.000000
s hg38.chr6_KI270758v1_alt      8697 69 +     76752 AAAaacaacagaatgtataattttttgcaatattttattatcactaagcat-gtatc-taattactttgct
s panTro5.chr6             142708464 69 - 175400573 AAAaacaacagaacgtataattttttgcaatattttattatcactaagcat-gtatc-taattcctttgct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860065 69 - 173848474 AAAaacaacagaacgtataattttttgcaatattttattatcactaagcat-gtatc-taattcctttgct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377821 69 +   2807050 AAAaacaacagaatgtataattttttgcaatattttattatcactaagcat-gtatc-taattactttgct
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670728 69 - 122973662 AAAAACAACAGAACTTATAATTTTTTGCGATATTTTATTATCACTAAGTGT-GTATc-taattactttgct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295176 69 - 172585720 AAAaacaacagaacgtataattttttgcaatattttattatcactaagcat-gtatc-taattactttact
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455496 65 + 170955103 AAAAACAACAGAACGTATAATTTTTTGCAATATTTTATTATCACTAAGCAT-GTATC-----TACTTTACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171705 69 +    407600 AAAaacaacagaacgtataattttttgcaatattttattatcactaagcat-gtatc-taattactttact
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       44187 69 +    463628 AAAaacaacagaacgtataattttttgcaatattttattatcactaagcat-gtatc-taattactttact
i cerAty1.NW_012003702v1   I 566 C 0
s chlSab2.chr17             39622344 69 +  71996105 AAAaacaacagagcgtataattttttgcaatattttattatcactaagcat-gtatc-taattactttact
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42499 66 -    115496 AAAaacaacagaacgtataattttttgcaatatt---ttatcactaagcat-gtatc-taattactttgct
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      672911 64 -   1936607 AAAAACAACAGAATGTATAATTTTTGGCAATATTttattatcactaggcat-gtatc-taa-----ttact
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613571 69 - 171630274 AATaacaacagaatgtataattttttgcaatattttattatcactaagcac-atatc-taattactttgct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171299 66 +   1154217 ---AACAACAGAATGTATAATTTTTTGCGATATTttattatcactaagcac-gtatc-taatcactttggt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998221 66 +  15232693 ---AACAACAGAATGTATAACTTTTTGCAATATTttattatcactaagcat-gtatc-taattactttgct
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240525 66 +    446445 AATAACAACAGAATGTATAATTTTTTGCAATATT---TTATCActaagcac-gtttc-taattactttgct
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4429237 69 + 123392446 GAAAACAATGGAATGTATACTTTTT-ACAGTATTTTATTATCACTGAgcatagtgcc-taattactttgct
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       75375 69 +   1371726 GAAAACAATGGAATGTATAATTTTT-GCAATATTttattatcactaagcatattgcc-taattactttgct
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15309236 69 -  18854210 AAAAACAATGGAATATATACTTTGT-GAAATATTTTATTACtactaagcatagtacc-taattactttgct
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70358875 60 -  72498081 AAAAATAATGGAATTTATAATTTTTTGCA----------ATCACTAAGCAT-GAGACATAATTACTTTTCT
i canFam3.chr12            I 1 I 192
s dasNov3.JH569424            437101 65 +    935526 AAAAAGTAATGAATTCAAAATTTT--GCTGTATT--ATTATTGCTAAGTTTAGTTTC-TCTGTA-TCTGCT
i dasNov3.JH569424         C 0 C 0

a score=1366582.000000
s hg38.chr6_KI270758v1_alt      8766 102 +     76752 tgcgttttcct-tttaattctgatattaattcaatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agttaagtaagataccagtgaaa
s panTro5.chr6             142708533 102 - 175400573 tgcgttttcct-tttaattctgatattaattcaatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agttaagtaagataccagtgaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860134 102 - 173848474 tgcattttcct-tttaattctgatattaattcaatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agttaagtaagataccagtgaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377890 102 +   2807050 tgcgttttcct-tttaattctgatattaattcaatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agttaagtaagataccagtgaaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670797 102 - 122973662 tgcattttcct-tttaattctgatattaattcagtgtagtaaaaattaacgccagtattttcatgagtaatgtgaggc----ta---agttaagtaagttaccagtgaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295245  96 - 172585720 tgcgttttcat-tttaattctgatattaatt-aatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agt-----aagataccagtgaaa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455561  96 + 170955103 TGTGTTTTCAT-TTTAATTCTGATATTAATT-AATGTAGTAAAAATTAACACCAGTATTTTCATGAGTAATGTgaggc----ta---agt-----aagataccagtgaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171774  96 +    407600 tgcgttttcat-tttaattctgatattaatt-aatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agt-----aagataccagtgaaa
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       44256  99 +    463628 tgcgttttcat-tttaattctgatattaatt-aatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agttaa--aagataccagtgaaa
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39622413  92 +  71996105 tgcgttttcat-tttaattctgatattaatt-aatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc-----------t-----aagataccagtgaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42565  96 -    115496 tgcgttttcat-tttaattctgatattaatt-aatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agt-----aagataccagtgaaa
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      672975  96 -   1936607 tgtgttttcat-tttaattctgatattaatt-aatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agt-----aagataccagtgaaa
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613640 101 - 171630274 tgaattttcct-tttaattctgataataactcaatgtaataaaaattaacaccagtgttttcatgagtaatgtgaggc----ta---agttaagtaggataccagtg-aa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171365 102 +   1154217 tgaattttctt-tttaattctgataataactcaatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agttaagtaggataccagtgaaa
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998287 102 +  15232693 tgaattttctt-tttaattctgataataactcaatgtagtaaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agttaagtaagataacagtgaaa
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240591 102 +    446445 tgaattttcct-tttaattctgataataactcaatgtaataaaaattaacaccagtattttcatgagtaatgtgaggc----ta---agttaagtaggataccagtgaaa
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4429306 102 + 123392446 tacatttttcc-tttaaatctgataataactcaatgttgtaaaaattaacatcagtattttcatgaggaatctgaggc----ta---aattaagtaagacaccaatgaat
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       75444 102 +   1371726 tacatttttcc-tttaattctgataataactcaatgctgtaaaaattaacgtcagtattttcatgaggaatctgaggc----ta---aattaagtaagacaccaatgaat
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15309305  98 -  18854210 tacattttccc-tttaagtctgaaaacaactcaatgcaataaaaattaacatcaatattttcatgaggaatctgaggc----ta---aat----taagatacccatgaat
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70359127 104 -  72498081 tgcatttgtcc-tttaatatt-ataataactcagtgt-gtaaaaattgccatcagtattttcatgaaacaaatcaagtaagttg---agttaagcaaggtatcagtgaat
i canFam3.chr12            I 192 C 0
s dasNov3.JH569424            437166 102 +    935526 TGCATTTTCTTATGTAATTATCAATATAACTCAATGAAGTAAATATTAACATCAATATTTTCATGAG----ATGAATC----AATGGAATTAAGTAATATTCCAATAAAA
i dasNov3.JH569424         C 0 N 0

a score=947435.000000
s hg38.chr6_KI270758v1_alt      8868 67 +     76752 acatagctagtaaatgatacagccaagatgaaacccaagcctaactcatttcaacagcatttatttg-
s panTro5.chr6             142708635 67 - 175400573 acatgcctagtaaatgatacagccaagatgaaacccaagcctaactcatttcaacagcatttatttg-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860236 67 - 173848474 acatacctagtaaatgatacagccaagatgaaacccaagcctaactcatttcaacagcatttatttg-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2377992 67 +   2807050 acatagctagtaaatgatacagccaagatgaaacccaagcctaactcatttcaacagcatttatttg-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670899 67 - 122973662 acatacctagtaaatgatacagccaagctgaaacccaagcctaactcatttcaacagcatttatttg-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295341 67 - 172585720 acacagctagtaaatgacacagccaagatgaaacccaggcctagctcatttcaacagcgtttatttg-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455657 67 + 170955103 acatagctagtaaatgatacagccaagatgaaacccaggcctagctcatttcaacagcgtttatttg-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171870 67 +    407600 acacagctagtaaatgatacagccaagatgaaacccaggcctagctcatttcaacagcgtttatttg-
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       44355 67 +    463628 acacagctagtaaatgatacagccaagatgaaacccaggcctagctcatttcaacagcgtttatttg-
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39622505 67 +  71996105 acatagctagtaaatgatacagccaagatgaaacccaggcctagctcatttcaacagcgtttatttg-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42661 67 -    115496 acatagctagtaaatgatacagccaagatgaaacccaggcctagctcatttcaacagcgtttatttg-
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673071 67 -   1936607 acatagctagtaaatgatacagccaagatgaaacccaggcctagctcatttcaacagcgtttatttg-
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613741 67 - 171630274 acatagatagtaaatgatacagccacgatgaaacccaagcctaactcatttcaacagcaattatttg-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171467 67 +   1154217 acatagctagtaaatgatacagccaagatgaaacccaagcctaactcatttcaacagcaattatttg-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998389 67 +  15232693 acatagctagtaaatgatacagccaagatgaaatccaagcctaactcatttcaacagcaattatttg-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240693 67 +    446445 acatagctagtaaatgatacagccaagatgaaacccaagcctaactcatttcaacagcaattatttg-
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4429408 67 + 123392446 acatagctagtcaatgatagagccaagatgaaacccaagtctaactcatttcaacagcacttatttg-
i micMur3.chr6             C 0 I 163
s proCoq1.NW_012150019v1       75546 67 +   1371726 acatagctagtcaatgatagagccaagatgaaacccaagtctaactcatttcaacagcacttatttg-
i proCoq1.NW_012150019v1   C 0 I 2
s otoGar3.GL873550          15309403 25 -  18854210 aca----tagtaaatggtagagcc--------aCCTG-------------------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70359231 65 -  72498081 acacagctagtaaat-atagag-taagatgaagcccaagttgacgtcaattcaacatctggtatttg-
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            271633 68 +    935526 ggaaagctaattaataggagggcctagatgaagcccaagtctcacttctttcaacagcatgcattttg
i dasNov3.JH569424         N 0 C 0

a score=1066574.000000
s hg38.chr6_KI270758v1_alt      8935 83 +     76752 cagtctaccacactatcATGAAT-AGTTTACCTTAGTGGTTTATGGCAGGTTCTAGAAACTATTTTAGAGATAAATATCAAGTC
s panTro5.chr6             142708702 83 - 175400573 cagtctaccacactatcATGAAT-AGTTTATCTTTGTGGTTTATGGCGGGTTCTGGAAACTATTTTAGAAATAAATATCAAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860303 83 - 173848474 cagtctaccacactatcATGAAT-AGTTTATCTTTGTGGTTTATGGCGGGTTCTGGAAACTATTTTAGAAATAAATATCAAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378059 83 +   2807050 cagtctaccacactatcATGAAT-AGTTTATCTTAGTGGTTTATGGCAGGTTCTAGAAACTATTTTAGAGATAAATATTAAGTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45670966 83 - 122973662 cagtctaccacactatcATGAAT-AGTTTATCTTTGTGGTTTATGGCAGGTTCTGGAAACTATTTTAGAAATAAATATCAAGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295408 83 - 172585720 cagtctaccacactgtcATAAAT-AGTTTATCTTTATGGTTTATGGCAGGTTCTGGAAACCATTTTGGAAATAAGTATCAAGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455724 83 + 170955103 caatctaccacactTTCATAAAT-AGTTTATCTTTATGATTTATGGCAGGTTCTGGAAACCATTTTGGAAATAAGTATCAAGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      171937 83 +    407600 cagtctaccacactgtcATGAAT-AGTTTATCTTTATGGTTTATGGCAGGTTCTGGAAACCATTTTAGAAATAAGTATCAAGTC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       44422 83 +    463628 cagtctaccacactgtcATAAAT-AGTTTATCTTTATGGTTTATGGCAGGTTCTGGAAACCATTTTGGAAATAAGTATCAAGTC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39622572 83 +  71996105 cagtctaccacactgtcATAAAT-AGTTTATCTTTATGGTTTATGGCAGGTTCTGGAAGCCATTTTAGAAATAAGTATCAAGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42728 83 -    115496 cagtctaccacactgtcATAAAT-AGCTTATCTTTATGGTTTATGGCAGGTTCTGGAAACCATTTTAGAAATAAGTATCAAGTC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673138 83 -   1936607 cagtctaccacactgtcATGAAT-AGTTTATCTTTACGGTTTACGGTAGGTTCTGGAAACCATTTTAGAAATAAGTATCAAGTC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613808 83 - 171630274 cagtctatcacactgtcATGAAT-AGTTAATCTTTATGGTTTATGGCAGGCTCTGGAAACTATTTTAGAAATAAATATCAAGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171534 84 +   1154217 cagtctatcacactgtcATGAATAAGCTAATCCTTATGGTGTATGGCAGGCTCTGGAAACTATTTTAGAAATAAATATCAAGTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998456 83 +  15232693 cagtctatcacactgtcATGAAT-AACTAATCTTTATGGTGTATGGCAGGCTCTGGAAACTAGTTTAGAAATAAATATTAAGTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240760 83 +    446445 cagtctatcacactgtcATGAAT-AGCTAATCTTTATGGTTTATGGCAGGCTCTGGAAACTGTTTTAGAAATAAATATCAAGTC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       75615 70 +   1371726 gtgtctactgcacTGTCATGGAT-AGTTAATCTTTATGATTTGTGGTAGGTTCTGGTAACCATTTTAGAAA-------------
i proCoq1.NW_012150019v1   I 2 C 0
s otoGar3.GL873550          15309428 72 -  18854210 AAGTCTACAATACTGTGATGAAT-AGTTATTCTTTATGATTTTTGGTAGGTTCTCACAACCATTTCAGAAAAA-----------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70359297 81 -  72498081 tactctatcaaactatcA-GGAT-AATTGATCTTTATGGTTTGGGGTAGGCTCTGGTAACTAGTT-AGAAATAAATTTCAAGTA
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            271701 82 +    935526 cagtctaccacactgtcATGGAT-GATTTAATTTTATGGTTTAGGGTAGATTCTAGTAGCCATTCTAGA-ATAAATATCCAATC
i dasNov3.JH569424         C 0 I 1209
e micMur3.chr6               4429475 163 + 123392446 I

a score=26273.000000
s hg38.chr6_KI270758v1_alt      9018 2 +     76752 AT
s panTro5.chr6             142708785 2 - 175400573 AT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860386 2 - 173848474 AT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378142 2 +   2807050 AT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671049 2 - 122973662 AT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295491 2 - 172585720 AT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455807 2 + 170955103 AT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172020 2 +    407600 AT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       44505 2 +    463628 AT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39622655 2 +  71996105 AT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42811 2 -    115496 AT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673221 2 -   1936607 AT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613891 2 - 171630274 AC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171618 2 +   1154217 AT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998539 2 +  15232693 AT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240843 2 +    446445 AT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       75685 1 +   1371726 -T
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15309500 2 -  18854210 CT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70359378 2 -  72498081 AT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            272992 2 +    935526 AT
i dasNov3.JH569424         I 1209 N 0
e micMur3.chr6               4429475 163 + 123392446 I

a score=1207386.000000
s hg38.chr6_KI270758v1_alt      9020 100 +     76752 AGTTTTATAGACAAATGAGCAACA---GTTCATCGTGTTTCAAATATTCCTTCCTCTCATCTTAATGTCATATCTTTCTCCCCAACCCCAAATT--TCACTCAGC
s panTro5.chr6             142708787 103 - 175400573 AGTTTTATAGACAAATGAGCAACAACAGTTCATTGTGTTTCAAATATTCTTTCCTCTCATCTTAATGTCATATCTTTCTCCTCAACCCCAAATT--TCACTCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860388 103 - 173848474 AGTTTTATAGACAAATGAGCAACAACAGTTCATTGTGTTTCAAATATTCTTTCCTCTCATCTTAATGTCATATCTTTCTCCTCAACCCCAAATT--TCACTCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378144 100 +   2807050 AGTTTTATAGACAAATGAGCAACA---GTTCATTATGTTTCAAATATTCCTTCCTCTCATCTTAATGTCATATCCTTCTCCCCAACCCCAAATT--TCACTCAGC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671051  96 - 122973662 AGTTTTATAGACAAATGAGCAACA-------GTTGTGTTTCAAGTATTCTTTCCTCTCATCTTAATGTCATATCTTTCTCCCCAACCCCAAATT--TCACTCAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295493 100 - 172585720 GGCTTTATAGACAAATGAGCAATA---GTTCATTGTGTTTCAAATATTCTTTCCTCTCATCTTAATGTCATATTTTTCTCCCCAACCCCAAATT--TCACTCAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455809 100 + 170955103 AGCTTTATAGACAAATGAGCAATA---GTTCATTGTGTTTCAAATATTCTTTCCTCTCATCTTAATGTCATATTTTTCTCCCCAACCCCAAATT--TCACTCAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172022 100 +    407600 AGCTTTATAGACAAATGAGCAATA---GTTCATTGTGTTTCAAATATTCCTTCCTCTCATCTTAATGTCATATTTTTCTCCCCAACCCCAAATT--TCACTCAGC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       44507 100 +    463628 AGCTTTATAGACAAATGAGCAATA---GTTCATTGTGTTTCAAATATTCTTTCCTCTCATCTTAATGTCATATTTTTCTCCCCAACCCCAAATT--TCACTCAGC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39622657 100 +  71996105 AGCTTTATAGACAAATGAGCAATA---GTTCATTGTGTTTCAAATATTCTTTCCTCTCATCTTAATGTCATATTTTTCTCCCCAACCCCAAATT--TCACTCAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42813 100 -    115496 AGCTTTATAGACAAATGAGCAATA---GTTCATTGTGTTTCAAATATTCTTTCCTCTCATCTTAATGTCATATTTTTCTCCCCAACCCCAAATT--TCACTCAGC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673223 100 -   1936607 AGCTTTATGGACAAATGAGCAATA---GTTCATTGTGTTTCAAATATTCTCTCCTCTCATCTTAATGTCATATTTTTCTCCCCAACCCCAAATT--TCACTCAGC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613893  99 - 171630274 AGTTTTATAGACAAATGGGCAATA---GTTCACTGTGTTTCAAATATTCTTTCCTCTCATCTTAATG-CATATCTTTCTCCCCAACCCCAGATT--TCACTCAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171620 100 +   1154217 AGTTTTATAGACAAATGAACAATA---GTTCACTGTGTTTCAAATATTCTTTCCTCTCATCTTAATGTCATATCTTTCTCCCCAACCCCAAATT--TCACTCGGC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998541 100 +  15232693 AGTTTTATAGACAAATGAGCAATA---GTTCATTGTGTTTCAAATATTCTTTCCACTCATCTTAATGTCATATCTTTCTCCCCAACCCCAAATT--TCACTCAGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240845  94 +    446445 AGTTTTATAGACAAATGAGCAA---------ATTGTGTTTCAAATATTCTTGCCTTTCATCTTAATATCGTATCTTTCTCCCTAATCCCAAATT--TCACTCAGC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       75686  90 +   1371726 AGTTTT----ACAAATGAGCAATA---GCTCACTGTGTTTCACTTATT--TTCCTCTCATTTTAATGCCATATCCTGCCTCCC--TTTCCACTTACTCACT----
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15309502  88 -  18854210 AAACTT----ATAAATGAGCAATA---ATTCACTGTGTTTCACATACT--TGCCTCTCATTTTAGTGCCATATCCTGTCCCCA--TCTCCCCTT--CTACT----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70359380 100 -  72498081 AGTTTCACAGAGAAGTAAGCAAGA---GCTCACTGTATCTCAAACATTTTTTCACTCTATTTTAATGTCATGTTTTCCCCCAACTTTCCACTTT--TTACTTGAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            463560  88 +    935526 AGTTTCACAAACATTTGAGCAACA---GCTCACTGTGACTCAACCATTCTTTCCTACCATTTTTCTGTTACAT----CTCCCC--------ACT--TTAGTGAGT
i dasNov3.JH569424         N 0 C 0
e micMur3.chr6               4429475 163 + 123392446 I

a score=581950.000000
s hg38.chr6_KI270758v1_alt      9120 38 +     76752 TTTTCCACTCA--AAGACACATCTTCAAATATAAGGTGGT
s panTro5.chr6             142708890 38 - 175400573 TTTTCCACTCA--AAGACACATCTTCAAATATAAGGTGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860491 38 - 173848474 TTTTCCACTCA--AAGACACATCTTCAAATATAAGGTGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378244 38 +   2807050 TTTTCCACTCA--AAGACACATCTTCAAATATAAGGTGGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671147 38 - 122973662 TTTTCCACTCA--AAGACACATCTTCAAATATAAGATGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295593 38 - 172585720 TTTTTCACTCA--AAGACACATCTTCAAATATAAGACGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455909 38 + 170955103 TTTTTCACTCA--AAGACACATCTTCAAATATAAGACGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172122 38 +    407600 TTTTTCACTCA--AAGACACATCTTCAAATATAAGACGGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       44607 38 +    463628 TTTTCCACTCA--AAGACACGTCTTCAAATATAAGACGGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39622757 38 +  71996105 TTTTTCACTCA--AAGACACATCTTCAAATATAAGACAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42913 38 -    115496 TTTTTCACTCA--AAGACACATCTTCAAATATAAGACGGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673323 38 -   1936607 TTTTTCACTCA--AAGACACATCTTCAAATATAAGACGGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138613992 38 - 171630274 TTTTCGACTCA--AAGGCAAATCTTCAAATATAAGATGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171720 38 +   1154217 TTTTCCACTTA--AAGACACATCTTCAAATAGAAGATGGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998641 38 +  15232693 TTTTCCACTCA--AAGACACATCTTCAAATATAAGATGGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240939 38 +    446445 TTTTCCATTCA--AAGGCACATCTTCAAATATAAGATGAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4429638 38 + 123392446 TTTTCCACTCA--AAAACACATCTCCTAATATAAGATGGT
i micMur3.chr6             I 163 I 322
s proCoq1.NW_012150019v1       75776 38 +   1371726 TTTTCCCCTCA--AAAACACATCTCCAAATATAAGATGGT
i proCoq1.NW_012150019v1   C 0 I 11
s otoGar3.GL873550          15309590 38 -  18854210 --TTCCACTCAAGAAAACACATCTCCAAATATAATATGGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70359480 37 -  72498081 TTTTCTGCACG--GGGATACATATCC-AATACAAGATTGT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            463648 37 +    935526 TTTTCCACTTA--GGGA-ACATCTCCAAATGTAAGGTGGT
i dasNov3.JH569424         C 0 C 0

a score=3269406.000000
s hg38.chr6_KI270758v1_alt      9158 268 +     76752 TTCAAGAATC-AGTCAGACTACTCTCTCGGTAATACAATAGGCATCTGAGACTATGTCTAACAGAATGGGTAAGGCCAGTCTTCAGTGTCCAATCTCTTTGCTCATTAAATCTGGAATGAACGATGTTGATATGT-AAATCCTGCAATGTTTATGGATTCTTCTGTCTTCCTTCTCCCCACTCTAACCCCATC---TGCTCCCCTCCATCC----CATGCATT--CTGAGA-TCCATACCTTGGGGTTTCAGATTCACTCTACTGAAGATAGAGTTATAT
s panTro5.chr6             142708928 268 - 175400573 TTCAAGAATC-AGTCAGACTACTCTCTCGGTAATAAAATAGGCATCTGAGACTATGTCTAACAGAATGGGCAAGGCCAGTCTTCACTGTCCAATCTCTTTGCTCATTAAATCTGGAATGAACGATGTTGATATGT-AAATCCTGCAATATTTATGGATTCTTCTGTCTTCCTTCTCCCCACTCTAACCCCATC---TGCTCCCCTCCATCC----CATGCATT--CTGAGA-TCCATACCTTGGGGTTTCAGATTCACTGTACTAAAGATACAGTTTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860529 268 - 173848474 TTCAAGAATC-AGTCAGACTACTCTCTCGGTAATAAAATAGGCATCTGAGACTATGTCTAACAGAATGGGCAAGGCCAGTCTTCACTGTCCAATCTCTTTGCTCATTAAATCTGGAATGAACGATGTTGATATGT-AAATCCTGCAATGTTTATGGATTCTTCTGTCTTCCTTCTCCCCACTCTAACCCCATC---TGCTCCCCTCCATCC----CATGCATT--CTGAGA-TCCATACCTTGGGGTTTCAGATTCACTGTACTAAAGATACAGTTTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378282 268 +   2807050 TTCAAGAATC-AGTCAGACTACTCTCTCGGTAATAAAATAGGCATCTGAGACTACGTCTAACAGAATGGGTAAGGCCAGTCTTCAGTGTCCAATCTCTTTGCTCATTAAATCTGGAATGAACGATGTTGATATGT-AAATCCTGCAATGTTTATGGATTCTTCTGTCTTCCTTCTCCCCACTCTAACCCCATC---TGCTCCCCTCCATCC----CATGCATT--CTGAGA-TCCATACCTTGGGGTTTCAGATTCACTCTACTGAAGATAGAGTTATAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671185 268 - 122973662 TTCAAGAATC-AGTCTGACTACTCTCTCGGTAATAAAATAGGCATCTGAGACTATGTCTAACAGAATGGGTAAGGCCAGTCTTCAGTGTCCAATCTCTTTGCTCATTAAATCTGGAATGAACGATGTTGATATGT-AAGTCCTGCAATGTTTATCGATTCTTGTCTCTTCCTTCTCCCCACTCTAACCCCATC---TGCTCCCCTCCATCC----CATGCATT--CTGAGA-TCCATACCTTGGGGTTTCAGATTCACTCTACTGAAGATACAGTTATAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295631 263 - 172585720 TTCAAGAATC-AGTCAGACTACTCTCCCAGTAATAAAATAGGCATCTGAAACTGTGTCTAACAGAATGGGTAAGGTCAATCTTCAGTGTACAATCTCTTTGCTCATTAAGTCTGGAATGAACAACATTGATGTGTAAAATCCTGTAATGTTTGTGGATCCTCCTCTCTTCCTTCTCCCCACTCTAACCCCATC---TGCTTCCCTCCATCC----CATGCATT--CTGAA-------ACCTTGGAGTTTCAGATTCACTCTACTGAAGATACTGTTAGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138455947 263 + 170955103 TTCAAGAATC-AGTCAGACTACTCTCCCAGTAATAAAATAGGCATCTGAAACTATGTCTAACAGAATGGGTAAAGCCAATCTTCAGTGTACAATCTCTTTGCTCATTAAGTCTGGAATGAACAACATTGATGTGTAAAATCCTGTAATGTTTGTGGATCCTCCTCTCTTCCTTCTCCCCACTCTAACCCCATC---TGCTTCCCTCCATCC----CATGCATT--CTGAA-------ACCTTGGAGTTTCAGATTCACTCTACTGAAGATACTGTTAGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172160 263 +    407600 TTCAAGAATC-AGTCAGACTACTCTCCCAGTAATAAAATAGGCATCTGAAACTGTGTCTAACAGAATGGGTAAGGCCAATCTTCAGTGTACAATCTCTTTGCTCATTAAGTCTGGAATGAACAACATTGATGTGTAAAATCCTGTAATGTTTGTGGATCCTCCTCTCTTCCTTCTCCCCACTCTAACCCCATC---TGCTTCCCTCCATCC----CATGCATT--CTGAA-------ACCTTGGAGTTTCAGATTCACTCTACTGAAGATACTGTTAGGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       44645 268 +    463628 TTCAAGAATC-ACTCAGACTACTCTCCCAGTAATAAAACAGGCATCTGAGACTATGTCTAACAGAATGGGTAAGGTTAATCTTCATTGTACAATCTCTTTGCTCATTAAGTCTGGAATGAACAATATTGATGTGTAAAATCCTGTAATGTTTGTGGATCCTCCTCTCTTCCTTCTCCCCACTCTAACCCCATC---TGCTTCCCTCCATCC----CACGCATT--CTGAG--TCCATACCTTGGAGTTTCAGATTCACTCTACTGAAGGTACAGTTACGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39622795 268 +  71996105 TTCAAGAATC-AGTCACACTACTCTCCCAGTAATAAAATAGGCATCTGAAACTATGTCTAACAGAATGGGTAAGGCCAATCTTCAGTGTACAATCTCTTTGCTCATTAAGTCTGGAATGAACAACATTGATGTGTAAAATCCTGTAAAGTTTGTGGATCCTCCTCTCTTCCTTCTCCCCACTCTGACCCCATC---TGCTTCCCTCCATCC----CATGCATT--CTGAG--TCCATACCTTGGAGTTTCAGATTCACTCTACTGAAGATACAGTTACAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       42951 268 -    115496 TTCAAGAATC-AGTCAGACTACTCTCCCAGTAATAAAATAGGCATCTGAAACTATGTCTAACAGAATGGGTAAGGCCAATCTTCAGTGTACAATCTCTTTGCTCATTAAGTCTGGAATGAACAACATTGATGTGTAAAATCTTGTAATGTTTGTGGATCCTCCTCTCTTCCTTCTCCCCACTCTAACCCTATC---TGCTTCCATCCATCC----CATGCATT--CTGAG--TCCATACCTTGGAGTTTCAGATTCACTCTACTGAAGGTACAGTTACGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673361 268 -   1936607 TTCAAGAATC-AGTCAGACTACTCTCCCAGTAATAAAATAGGCATCTGAAACTATGTCTAACAGAATGGGTAAGGCCAATCTTCAGTGTACAATCTCTTTGCTCATTAAGTCTGGAATGAACAGCATTGATGTGTAAAATCCTGTAATGCTTATGGATCCTTCTCTCTTCCTTCTCCCCATTGTAACCGCATC---TGCTCCCCTCCATCC----CATGCATT--CTGAG--TCCATACCTTGGAGTTTCAGATTCACTCTACTGAAGATACAGTTATGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614030 269 - 171630274 TTCAAGAATC-AGTCAGATTACTCTCCCCATAATAAAACAGGCATCTGAGACTATGTCTAACAGAATGGGTAAGGCCAATCTTCAGTGTCCAATCTCTTTGCTCATTAAGTCTGGAATGAACAATGTTGACATGT-AAATCCTGTAATGTTTATGGATCCTCCTCTCTTCCTTCTCCCCATTCTAACCTCATC---TGCTCCCCTCCATCC----CATGCATT--CTCAGAGTCCATACCTTGGGGTTTCAGATTCACTCTACTGAAGATGCAGTCACGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            171758 265 +   1154217 TTCAAGAA-----TCAGACTGCTCTCCCCAAAATAAAATAGGCATCTGAAACTATGTCTAATAGACTGGGTAAGGTCAATCTTCAGTGTCCAGTTTCTTTGCTCATTAAGTCTGGAATGAACAAAGTTGACATGT-AAATCCTGTAATGTTTATGGATCCTCCTATCTTCTTTCTCCCCACTCTAGCCCTATC---TGCTCCCCTCCATCC----CACGCATT--CTCAGAGGCCATACCTTGGGGTTTCAGATTCACTCTACTGAAGATGCAGTTATGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998679 265 +  15232693 TTCAAGAA-----TCAGACTACTCTCCCCATAATAAAATAGGCATCTGAGATTATGTCTAATAGAATGGGTAAGGCCAATCCTCAGCGTCCAATCTCTTTGCTCATTAAGTCTGGAATGAACAATGTTGACGTGT-AAATCCTGTAATGTTTATGGATCCTCCTCTTTTCCTTCTCCCCACTCTAACCCTATC---TGCTCCCCTCCATCC----CACACATT--CTCAGAGTCCATACCTTGGGGTTTCAGATTCACTCTACTGAAGATGCAGTTATGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      240977 269 +    446445 TTCAAGAATC-AGTCAGACTACTCTCCCCATAATAAAATAGGCATCTGAGACTATGTCTAACAGAATGGGTAAGGCCAATCTTCAGTGTCCAATCTCTTTGCTCATTAAGTCTGGAATGAACAATGTTGACATGT-AAATCCTGTAATGTTTATGGATCCTCCTCTCTTCCTTCTCCCCACTCTAACCCCATC---TGCTCCTCTCCATCC----CGTGCATT--CTTAGAGTCCATACCTTGGGGTTTCAGATTCATTCTACTGAAGATGCAGTTATGT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       75825 270 +   1371726 TCCAAGAATG-AGTCAGACTATTCCCCTGGGAATGAAACAGGCATCTGTAACCACGTCTTTTAGAATGGGCAATGCCAACCTTCAGTGTCCAGTGTCATTCCTCACTAAGTCTGGGGTGGGTGATGTTGATATGC-AAATCCTAAAATGTATGTGGAGGC---TCTTGTTCTGCTCCCCACTCTGCCCCCATC---CGCTCCCCTCCATCTGTCTCACCCATT--CTCAGAGGCCAAAACCTGGGGTTTGAGACTCACTTGGCTGAAGATACAGATATGT
i proCoq1.NW_012150019v1   I 11 I 42
s otoGar3.GL873550          15309628 273 -  18854210 TCCAAGCATG-AATCAATCTATTCTCCCAGAAGTGAAATGGGCATCTGAGGCCATGTCTAATCAAATGGGTAATACCAGTCTTCAGTGTCCAGTCTCATTCCTCATTAAGTCTGGAATGGGTGGTTTTGACATGC-AAATCCCGTAATGTATGTGGACCCTCTTCTTCTTCTGCTCCCCACTCCACCCTCATC---TGCTCCTCTCCATCTGGTACACCCATC--TGCAAAGGCTAAAACCTGGGGTTTGAAGTTCACTCTACTGAGGATACAGATATGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70359517 260 -  72498081 TTCAGGAATA-AGTCAGACCATTTATCTAGTAATGACACAGGCATCAAAGACCATGT-TAATAAAATGGGTAATGCTGATCCACAGTGTCCTATCCTATTTTCCGTTAAATCTGGAGTG----TCATTGATATGT-AAATCCTGTAACA--TGTAAATCCTCCTCTGTTTT------CCACTCCACTCTCATC---TGCTCCCCATCATCAGTCTTGCCTATTAGCTGCG--GCTAAACCCTATGCTTTAACATTCATTCTACTAAAGATCCACATGTAT
i canFam3.chr12            C 0 I 41
s dasNov3.JH569424            463685 260 +    935526 -ACAAAAATTAAGTCAG---AATCTTCTGGTAAAGGCACTGATATCTACGACTATGGTTAAC-----TGGTAATGCCAATCCCCAGTGTCCAATCCCATTCCTCATTCAGTCTGAAATG-----CGTTGATATGT-AAAGCCTATAATGTGTGTGGATGCCCCTCTCATTCTGCTCCCTGCAC--ACCCCCTCCCATACACCCCACCATCTGTC-CACCCATT--ATCAGAGGTCAAATCCTAGGCTTTGTAGTTCCCTCTACTGAAGATCTGGATATCT
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4429676 322 + 123392446 I

a score=387384.000000
s hg38.chr6_KI270758v1_alt      9426 28 +     76752 CATTG-----------------------------------------CTCAGTAGAGATCTC------------------------------CCAACAAA
s panTro5.chr6             142709196 28 - 175400573 CATTG-----------------------------------------CTCAGTAGAGATCTC------------------------------CCAACAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860797 28 - 173848474 CATTG-----------------------------------------CTCAGTAGAGATCTC------------------------------CCAACAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378550 28 +   2807050 CATTG-----------------------------------------CTCAGTAGAGATCTC------------------------------CCAACAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671453 28 - 122973662 CATTG-----------------------------------------CTCAGTAGAGATCTC------------------------------CCAACAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295894 28 - 172585720 CATTG-----------------------------------------CTCAGTAGAGCTCTC------------------------------CCAACAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456210 28 + 170955103 CATTG-----------------------------------------CTCAGTAGAGCTCTC------------------------------CCAACAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172423 28 +    407600 CATTG-----------------------------------------CTCAGTAGAGCTCTC------------------------------CCAACAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       44913 28 +    463628 CACTG-----------------------------------------CTCAGTAGAGCTCTC------------------------------CCAACAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623063 28 +  71996105 CATTG-----------------------------------------CTCAGTAGAGCTCTC------------------------------CCAACAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43219 28 -    115496 CACTG-----------------------------------------CTCAGTAGAGCTCTC------------------------------CCAACAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673629 28 -   1936607 CATTG-----------------------------------------CTCAGTAGAGCTCTC------------------------------CCAACAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614299 28 - 171630274 CATTG-----------------------------------------CTCAGTAGAGATCTC------------------------------ACAACAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172023 28 +   1154217 CATTG-----------------------------------------CTCTGTAGAGATCTC------------------------------CCAACAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998944 28 +  15232693 CATTG-----------------------------------------CTCAGTAGAGATCTC------------------------------CCAACAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241246 28 +    446445 CATCA-----------------------------------------CTCAGTAGAGATCTC------------------------------CCAACAAA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4429998 28 + 123392446 CATTG-----------------------------------------CTCAGTAGGGGTCTC------------------------------GCAACAAA
i micMur3.chr6             I 322 C 0
s proCoq1.NW_012150019v1       76137 28 +   1371726 CATTG-----------------------------------------CTCAGCAGGGATCTC------------------------------CCAACAAA
i proCoq1.NW_012150019v1   I 42 C 0
s otoGar3.GL873550          15309901 55 -  18854210 CATTG--------------------------------------------ACTTGCGGTCTCAAGAACCAAAACCAGATTCTGAACCCACGGCTCACAGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70359818 28 -  72498081 CATTC-----------------------------------------CTAAGCAGAGATCTC------------------------------TCAACAAA
i canFam3.chr12            I 41 C 0
s dasNov3.JH569424            463945 69 +    935526 CATTGAACTGAGGTTTAAGAACCAAAAACAGATTCTGAACCTACTCATCAGTAGAGCACTC------------------------------CCAACAAA
i dasNov3.JH569424         C 0 C 0

a score=1187290.000000
s hg38.chr6_KI270758v1_alt      9454 100 +     76752 CCAATCCCACTTTA-GG-TTTT-CCTGATGAGGAC-------TAGACCACAACAAGAGGGTTGCCTGCAGATGCACAAAATGAGACCAAGCCCAAATGAACC-G--GGATATG
s panTro5.chr6             142709224 101 - 175400573 CCAACCCCACTTTA-GG-TTTTTCCTGATGAGGAC-------TAGACCACAACAAGAGGGTTGCCTGCAGATGCACAAAATGAGACCAAGCCCAAATGAACT-G--GGATATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860825 100 - 173848474 CCAACCCCACTTTA-GG-TTTT-CCTGATGAGGAC-------TAGACCACAACAAGAGGGTTGCCTGCAGATGCACAAAATGAGACCAAGCCCAAATGAACT-G--GGATATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378578 101 +   2807050 CCAACCCCACTTTA-GG-TTTTTCCTGATGAGGAC-------TAGACCACAACAAGAGGGTTGCCTGCAGATGCACAAAATGAGACCAAGCCCAAATGAACC-G--GGATATG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671481 100 - 122973662 CCAACCCCACTTTA-GG-TTTT-CCTGATGAGGAC-------CAGACCACAACAAGAGGGTTGCCTGCAGATGCACAAAATGAGACCAAGCCCAAATGAACC-G--GGATATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139295922 100 - 172585720 CCAATCCTACTTCA-GG-TTTT-CCTG--AAGGAC-------TAGGCCACAACAAGAGGGTTGCCTGCAGATGCACAAAATGAGACTAAGCCCAAATGAACT-GATGAATATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456238 100 + 170955103 CCAATCCTACTTCA-GG-TTTT-CCTG--AAGGAC-------TAGGCCACAACAAGAGGGTTGCCTGCAGATGCACAAAATGAGACCAAACCCAAATGAACT-GATGAATATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172451 100 +    407600 CCAATCCTACTTCA-GG-TTTT-CCTG--AAGGAC-------TAGGCCACAACAAGAGGGTTGCCTGCAGATGCACAAAATGAGACTAAGCCCAAATGAACT-GATGAATATG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       44941 102 +    463628 CCAACCCCACTTCA-GG-TTTT-CCTGATAAGGAC-------TAGACCACAACAAGAGGGTTGCCTGCAGATGCACAAAATGAGACTAAGCCCAAATGAACT-GATGAATATG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623091 100 +  71996105 CCAACCCCACTTTA-GG-TTTT-CCTG--AAGGAC-------TAGACCACAACAAGGGGGCTGCCTGCAGATGCACAAAATGAGACCAAACCCAAATGAACT-GATGAATATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43247 100 -    115496 CCAATCCTACTTCA-GG-TTTT-CCTG--AAGGAC-------TAGGCCACAACAAGGGGGCTGCCTGCAGATGCACAAAATGAGACCAAACCCAAATGAACT-GATGGATATG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673657 100 -   1936607 CCAACCCCACTTCA-GG-TTTT-CCTG--AAGGAC-------TAGACCACAACAAGGGGGGTGCCTGCAGATGCACAAAATGAGACCAAGCCCAAATGAACT-GATGAATATG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614327  97 - 171630274 CCAATCCCACTTAA-GG-TTTT-CCTGATAAGGAC-------TAGACC---ACAAGAGGATTGCCTGCAGATGCACAAAATGAGACCAAGCCCACATGAACC-G--GGATATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172051  97 +   1154217 CCAATCCCACTTTA-GG-TTTT-CCTGATGAGGAC-------TAGACC---ACAAGAGGATTGCTGGCAGGTGCACAAAATGAGACCAAGCCCCGATGAATC-G--GGATATG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13998972  97 +  15232693 CCAATCCCACTTTA-GG-TTTT-CCTGTTGAGAAC-------TAGACC---ACAAGAGGGTTGTCGGCAGATGCACAAAATGAGACCAAGCCCAAATGAACC-G--GGATATG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241274  98 +    446445 CCAATCCCACTTTA-GG-TTTT-CCTGATGAGGAC-------TAGACC---ACAAGAGGATTGCCGGCAGATGCACAAAATGAGACCAAGCCCAAATGAACCTG--GGATATG
i aotNan1.NW_018508875v1   C 0 I 12
s micMur3.chr6               4430026  90 + 123392446 CAAA--CTGCTTTA-GGTTTTT-CCTGATGAGGAC-------TAGACCTCAGCAACAGGGGTGCCTGCAGTTGCT---------ACCAAGCCCTACTGAACT-T--GGATATT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       76165  87 +   1371726 CGAA-----CTTTA-AGGTTTT-CCTGATGAGGAC-------TAGACCACAGCAACAGGGGTGCCTGCAGTTGCT---------ACTGAGCCCTACTGAACT-T--GGATATT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15309956  99 -  18854210 CAAC--CAGCATTA-GGGTTCT-CCTGTTGAGGAC-------TATACCACGGCAACAGGGTCACTTGTAGATGCTTGGAATGAAACCAAGCCCTAATGAACC-T--GGATATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34341757  85 +  94987271 CCAACTCCACTCTGTGG-TTTA-CCAG--ATGGACATGTTTTTAAGCAATAA---------TATCTGCAGAAGCTTAAAA----------CCCTAGTGAGGC-T--GG--GTT
i mm10.chr17               N 0 C 0
s canFam3.chr12             70359846 101 -  72498081 CAAACTCTACTCTA-GAGTTTT-CCATAGAGGGAC-------TGGACCATAGCAACTGGATTACTTGCAGATGCTGTGAATGAGACATGGTCATAATGAACC-T--GGATATT
i canFam3.chr12            C 0 I 199
s dasNov3.JH569424            464014 101 +    935526 CAAACTGTGCTTTA-GCATTTT-CCAGATGAGGAC-------TGGACCACAGCAGCTGAATTGCCTGAAGGTTCTATGAATGAGATCAAGTCTTGATGAAAC-T--GGGAATT
i dasNov3.JH569424         C 0 C 0

a score=1070049.000000
s hg38.chr6_KI270758v1_alt      9554 77 +     76752 TCT---------------------GATGAATTCTAGAATTTATAAGATAAATTCAACATTCAGATATTTTACCGGGAAAGGATCAC------------ATATATTCCCCA
s panTro5.chr6             142709325 77 - 175400573 TCT---------------------GATGAATTCTAGAATTTATAAGATAAATTCAACATTCAGATATTTTACCAGGAAAGGATCAC------------ATATATTCCCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140860925 77 - 173848474 TCT---------------------GATGAATTCTAGAATTTATAAGATAAATTCAACATTCAGATATTTTACCAGGAAAGGATCAC------------ATATATTCCCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378679 77 +   2807050 TCT---------------------GATGAATTCTAGAATTTATAAGATAAATTCAACATTCAGATATTTTACCGGGAAAGGATCAC------------ATATATTCCCCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671581 98 - 122973662 TCTGATgaattctagaatttataagatgaattctagaatttataagataaattcaacattcagatatttTACCAGGAAAGGATCAC------------ATATATTCCCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296022 89 - 172585720 TCT---------------------GATGAATTCCAGAATTTATAAGATAAATTCAACATTCAGATATTTTACCAGGAAAGGATCACATATATTTCCCAATATATTTCCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456338 89 + 170955103 TCT---------------------GATGAATTTCAGAATTTATAAGATAAATTCAACATTCAGATATTTTACCAGGAAAGGATCACATATATTTCCCAATATATTTCCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172551 89 +    407600 TCT---------------------GATGAATTCCAGAATTTATAAGATAAATTCAACATTCAGATATTTTACCAGGAAAGGATCACATATATTTCCCAATATATTTCCCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45043 72 +    463628 TCT---------------------GATGAATTCCAGAATTTATAAG-----TTCAACATTCAGATATTTTACCAGGAAAGGATCAC------------ATATATTCCCCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623191 77 +  71996105 TCT---------------------GATGAATTCCAGAATTTATAAGATAAATTCAACATTCAGATATTTTACCAGGAAAAGATCAC------------ATATATTTCCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43347 89 -    115496 TCT---------------------GATGAATTCCAGAATTTATAAGATAAATTCAACATTCAGATATTTTACCAGGAAAGGATCACATATATTTCCCAATATATTTCCCA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673757 77 -   1936607 TCT---------------------GACGAATTCCAGAATTTATAAGATAAATTCAACATTCAGATATTTTACCAGGAAAGGATCAC------------ATATATTTCCCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614424 77 - 171630274 TCT---------------------GATGAATTCCAGAGCTTATAAGATAAATTCAACATTCGGAGATTTTATGAGTAAGGGATCAC------------ATATATTCCCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172148 77 +   1154217 TCT---------------------GATGAATTCCAGAACTTATAAGATAAATTCAACATTCAGAGATCTTATGAGGAAAGGATCAC------------ATAGATTTCCCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999069 77 +  15232693 TCT---------------------GATGAATTCCAGAGCTTATAAGATAAATTCAACATTCATAGATTTCATGAGGAAAGGATCAC------------ATATATTCCCCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241384 77 +    446445 TCT---------------------GATGAATTCCAGAGCTTATAAGATAAATTCAAAATTCAGATATTTTATGAGTAAGGGATCAC------------ATATATTCCCCA
i aotNan1.NW_018508875v1   I 12 C 0
s micMur3.chr6               4430116 77 + 123392446 TCC---------------------AATTAATTCCAGAGCTTATAGGATACATTCAACATTCAGACATTTCAGGGTGGAAGGATCAC------------ATATATTCCCCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       76252 77 +   1371726 TCT---------------------AATTAATTCCAGAGCTTATAAGATACATTCAACATTCAGACATTTCAGGATGGAAGGATCAC------------ATAAATTCCCCA
i proCoq1.NW_012150019v1   C 0 I 19
s otoGar3.GL873550          15310055 75 -  18854210 TCT---------------------A--TTACTCCAGAGCTTATAAGATACATTCAGCACTCAGATATTTCAAGATGCAAAGATCAC------------ACATATTCCCCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34341842 69 +  94987271 TCT---------------------GATTAATCCCAGACTTTGTAAAGGGTACTCAGTATTCAGACAT--------GGGGGAAGTAC------------ACATACTCCTCA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70360146 77 -  72498081 TCT---------------------GACTGCTTATAGAACTTATCACATACATTCAACATTCACAAATTTCAGAATGAAAGGATCAC------------ATATATTCCTTT
i canFam3.chr12            I 199 C 0
s dasNov3.JH569424            464115 64 +    935526 TTT---------------------TATTAATCCC-----------TCTACACTCTACATTTAGACCCTTTATGATGGAGACATCAT------------ACATATTCCC--
i dasNov3.JH569424         C 0 C 0

a score=18380.000000
s hg38.chr6_KI270758v1_alt      9631 1 +     76752 G
s panTro5.chr6             142709402 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861002 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378756 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671679 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296111 1 - 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456427 1 + 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172640 1 +    407600 G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45115 1 +    463628 G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623268 1 +  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43436 1 -    115496 G
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673834 1 -   1936607 G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614501 1 - 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172225 1 +   1154217 G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999146 1 +  15232693 G
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241461 1 +    446445 G
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4430193 1 + 123392446 G
i micMur3.chr6             C 0 I 60
s otoGar3.GL873550          15310130 1 -  18854210 G
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34341911 1 +  94987271 G
i mm10.chr17               C 0 C 0
s canFam3.chr12             70360223 1 -  72498081 G
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464179 1 +    935526 A
i dasNov3.JH569424         C 0 C 0
e proCoq1.NW_012150019v1       76329 19 +   1371726 I

a score=219892.000000
s hg38.chr6_KI270758v1_alt      9632 30 +     76752 GACCGACTCCCCACCCCCCACCGCCACCCA
s panTro5.chr6             142709403 30 - 175400573 GACCAACTCCCCACCCTACACCGCCACCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861003 30 - 173848474 GACCAACTCCCCACCCTACACCGCCACCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378757 30 +   2807050 GACTGACTCCCCACCCCCCACCGCCACCCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671680 30 - 122973662 GACCAACTCCCCACCCCCGACCGCCACCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296112 30 - 172585720 CACCGACTCCCCACTCCCCACCGCCACCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456428 30 + 170955103 CACCGACTCCCCACTCCCCACCGCCACCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172641 30 +    407600 CACCGACTCCCCACTCCCCACCGCCACCCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45116 30 +    463628 CATCAACTCCCCACCCCCCACCGCCACCCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623269 30 +  71996105 CACTGACTCCCCACTCCCCACCGCCACCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43437 30 -    115496 CACCGACTCCCCACTCCCCACTGCCACCCA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673835 30 -   1936607 CACCAACTCCCCACTCCCCACCTCCACCCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614502 29 - 171630274 CACTGACT-CCCAGCCCCCACTGCTACACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172226 30 +   1154217 CACTGACTCCCCATCCCCCACTGCCACACA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999147 30 +  15232693 CACTGACTCCCCACTCCCCACTGCCACACA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241462 30 +    446445 CACTGACTCCCCAGCCTCCAATGCTACACA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15310131 21 -  18854210 ---------CTCCTTCCTCTCCCCCAACCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34341912 16 +  94987271 ------GGCCCTCCTCTCCACC--------
i mm10.chr17               C 0 C 0
s canFam3.chr12             70360224  8 -  72498081 -------TCCCTGTG---------------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464180  8 +    935526 -----GATCCCTG-----------------
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4430194 60 + 123392446 I
e proCoq1.NW_012150019v1       76329 19 +   1371726 I

a score=369560.000000
s hg38.chr6_KI270758v1_alt      9662 23 +     76752 AAGAACTGGCTTAA--ACACCAAAA
s panTro5.chr6             142709433 23 - 175400573 AAGAACTGGCTTAA--ACACCAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861033 23 - 173848474 AAGAACTGGCTTAA--ACACCAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378787 23 +   2807050 AAGAACTGGCTTAA--ACACCAAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671710 23 - 122973662 AAGAACTGGCTTAA--ACACCAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296142 23 - 172585720 AAGAACTGGCTTAA--ACACCAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456458 23 + 170955103 AAGAACTGGCTTAA--ACACCAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172671 23 +    407600 AAGAACTGGCTTAA--ACACCAAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45146 23 +    463628 AAGAACTGGCTTAA--ACACCAAAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623299 23 +  71996105 AAGAACTGGCTTAA--ACACCAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43467 23 -    115496 AAGAACTGGCTTAA--ACACCAAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673865 23 -   1936607 AAGAACTGGCTTAA--ACACCAAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614531 23 - 171630274 AAGAACTGGCTTAA--ACACCGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172256 23 +   1154217 AAGAACTGGCCTAA--ACACCAAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999177 23 +  15232693 AAGAACTGGCTTAA--ACACCAAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241492 23 +    446445 AAGAACTGGCTTAA--ACACCAAAA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       76348 23 +   1371726 AAGAACTGGCTCAA--ACAACAAAA
i proCoq1.NW_012150019v1   I 19 I 24
s otoGar3.GL873550          15310152 23 -  18854210 AAGAACTAGCTCAA--AAGACAAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34341928 23 +  94987271 AAGAACTGGCTCAG--GCACAAAAA
i mm10.chr17               C 0 I 5
s canFam3.chr12             70360232 22 -  72498081 AAGAACTGGCTTAG--ACATAAAA-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464188 25 +    935526 AAGGACTGTCTCAGACACACTGAAA
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4430194 60 + 123392446 I

a score=192826.000000
s hg38.chr6_KI270758v1_alt      9685 18 +     76752 ATTCCACCCAAGA-TCATC
s panTro5.chr6             142709456 18 - 175400573 ATTCCACCCAAGA-TCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861056 18 - 173848474 ATTCCACCCAAGA-TCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378810 18 +   2807050 ATTCCACCCAAGA-TCATC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671733 18 - 122973662 ATTCCACCCAAGA-TCATC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296165 18 - 172585720 ATTCCACCCAAGA-TCATC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456481 18 + 170955103 ATTCCACCCAAGA-TCATC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172694 18 +    407600 ATTCCACCCAAGA-TCATC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45169 18 +    463628 ATTCTACCCAAGA-TCATC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623322 18 +  71996105 ATTCCACCCAAGA-TCATC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43490 18 -    115496 ATTCCACCCAAGA-TCATC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673888 18 -   1936607 ATTCCACCCAAGA-TCATC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614554 18 - 171630274 GTTCCACTCAAGA-TCATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172279 18 +   1154217 ATTCCACTCAAGA-TTATC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999200 18 +  15232693 ATTCCACTCAAGA-TCATC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241515 18 +    446445 ATTCCACTCAAGA-TTATC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15310175 19 -  18854210 ATTCCACTGAAGACCCATC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34341956 14 +  94987271 TCACAACCCAAGG-T----
i mm10.chr17               I 5 C 0
s canFam3.chr12             70360254 18 -  72498081 ACTTCATCTCAGA-TCCAT
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            464213  8 +    935526 AGTCTACC-----------
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4430194 60 + 123392446 I
e proCoq1.NW_012150019v1       76371 24 +   1371726 I

a score=44269.000000
s hg38.chr6_KI270758v1_alt      9703 4 +     76752 AAAA
s panTro5.chr6             142709474 4 - 175400573 AAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861074 4 - 173848474 AAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378828 4 +   2807050 AAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671751 4 - 122973662 AAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296183 4 - 172585720 AAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456499 4 + 170955103 AAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172712 4 +    407600 AAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45187 4 +    463628 AAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623340 4 +  71996105 AAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43508 4 -    115496 AAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      673906 4 -   1936607 AAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614572 4 - 171630274 AAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172297 3 +   1154217 -AAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999218 3 +  15232693 -AAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241533 4 +    446445 AAAA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4430254 4 + 123392446 AAAA
i micMur3.chr6             I 60 C 0
s otoGar3.GL873550          15310194 4 -  18854210 AGGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70360273 3 -  72498081 AAA-
i canFam3.chr12            I 1 C 0
e mm10.chr17                34341970 0 +  94987271 C
e proCoq1.NW_012150019v1       76371 24 +   1371726 I
e dasNov3.JH569424            464221 0 +    935526 C

a score=981974.000000
s hg38.chr6_KI270758v1_alt      9707 69 +     76752 TAGTTTATTGTGTTCAG---AAA-------AATCACAGTTTGAGGAAACCTTAAACAATAAGTACAC-------AAGAGATGCCCC
s panTro5.chr6             142709478 65 - 175400573 TAGTTTATTGTGTTCAG---AAA-------AATCACAGTTTGAGGAAATCTTAA----TAAGTACAC-------AAGAGATGCCCC
i panTro5.chr6             C 0 I 1
s panPan2.chr6             140861078 69 - 173848474 TAGTTTATTGTGTTCAG---AAA-------AATCACAGTTTGAGGAAACCTTAAACAATAAGTACAC-------AAGAGATGCCCC
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01000036v1     2378832 69 +   2807050 TAGTTTATTGTGTTCAG---AAA-------AATCACAGTTTGAGGAAACCTTAAACAATAAGTACAC-------AAGAGATGCCCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671755 69 - 122973662 TAGTTTATTGTGTTCAG---AAA-------AATCACAGTTTGAGGAAACCTTAAACAATAAGTACAC-------AAGAGATGCCCC
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             139296187 70 - 172585720 TATTTTATTGTGTTCAG--AAAA-------AATCACAGTTTGAGGAAACCTTAAACAAAAAGTACAC-------AAGAGATGTCCC
i rheMac8.chr4             C 0 I 1
s macFas5.chr4             138456503 70 + 170955103 TATTTTATTGTGTTCAG--AAAA-------CATCACAGTTTGAGGAAACCTTAAACAAAAAGTACAC-------AAGAGATGTCCC
i macFas5.chr4             C 0 I 1
s macNem1.NW_012013344v1      172716 70 +    407600 TATTTTATTGTGTTCAG--AAAA-------AATCACAGTTTGAGGAAACCTTAAACAAAAAGTACAC-------AAGAGATGTCCC
i macNem1.NW_012013344v1   C 0 I 1
s cerAty1.NW_012003702v1       45191 71 +    463628 TATTTTATTGTGTTCAG-AAAAA-------AATCACAGTTTGAGGAAATCTTAAACAATAAGTACAC-------AAGAGATGCCCC
i cerAty1.NW_012003702v1   C 0 I 1
s chlSab2.chr17             39623344 71 +  71996105 TCATTTATTGTGTTCAG-AAAAA-------AATCACAGTTTGAGGAAACCTTAAACAAAAAGTACAC-------AAGAGATGCCCC
i chlSab2.chr17            C 0 I 18
s manLeu1.NW_012101600v1       43512 72 -    115496 TCATTTATTGTGTTCAGAAAAAA-------AATCACAGTTTGAGGAAACGTTAAACAAAAAGTACAC-------AAGAGATGCCTC
i manLeu1.NW_012101600v1   C 0 I 1
s colAng1.NW_012115555v1      673910 71 -   1936607 TCGTTTATTGTGTTCAG-AAAAA-------AATCACAGTTTGAGGAAACCTTAAACAAAAAGTACAC-------AAGAGATGCCCC
i colAng1.NW_012115555v1   C 0 I 18
s calJac3.chr4             138614576 69 - 171630274 TAGTTTATTGTGTTCAG---AAA-------AATCACAGTTTGAGGAAACCTTAAACAATAAGTACAC-------AAGAGATGCCCC
i calJac3.chr4             C 0 I 1
s saiBol1.JH378315            172300 69 +   1154217 TAGTTTATTGTGTTCAA---TAA-------CATCACAGTTTGAGGAGATCTGAAACAATAAGCACAC-------AAGAGATGCCCC
i saiBol1.JH378315         C 0 I 1
s cebCap1.NW_016107339v1    13999221 69 +  15232693 TAGTTTATTGTGTTCAG---AAA-------AATAACATTTTGAGGAAATCTCAAACAATAAGTACAC-------AAGAGATGCCCC
i cebCap1.NW_016107339v1   C 0 I 25
s aotNan1.NW_018508875v1      241537 69 +    446445 TAGTTTATTGTGTTCAG---AAA-------AGTCACAGTTTGAGGAAACCTTAAACAATAAGTACAC-------AAGAGATGCCCC
i aotNan1.NW_018508875v1   C 0 I 18
s micMur3.chr6               4430258 71 + 123392446 TAGTTTATTGTATTCAG-AAAAA-------AATCACAGTTTGAAGAAACCTAAAGCAATAAGTACAC-------AGGAGATGCCCT
i micMur3.chr6             C 0 I 1
s proCoq1.NW_012150019v1       76395 64 +   1371726 TAGTTTATTGTATTCAG---AAA-------AATCACAGTTTGAAGAACCCTGAAGCAATAAG------------AGGAGATACCCT
i proCoq1.NW_012150019v1   I 24 I 1
s otoGar3.GL873550          15310198 66 -  18854210 TAATTTATTGTATTTAG---AAA-------AAT--CAGTTTGAAGAAACTCTAAGCAACAAGGACAC-------AAGAGA-GCCTC
i otoGar3.GL873550         C 0 I 1
s mm10.chr17                34341970 57 +  94987271 --Gtttattatttgtaa---aaa-------aaaaa-----------------aaaaaaaaaGAACACAGTTTGGAGAAGATGACTC
i mm10.chr17               C 0 I 5
s canFam3.chr12             70360276 75 -  72498081 TAGTTTATTGTGTTAAA---AAAAAATCACAATCACAATTTGAAGAAACCA-AAGCACTAAGTGTAG-------AAGAGATATCTG
i canFam3.chr12            C 0 I 12
s dasNov3.JH569424            464221 69 +    935526 TTGTTTATTGTATACAG---AAA-------AATCATGGTTCAGGGAAATTCCAAGGAACAAGAACAC-------AAAAGATGCCCC
i dasNov3.JH569424         C 0 I 1

a score=50013.000000
s hg38.chr6_KI270758v1_alt      9776 8 +     76752 ATGGGGCA
s panTro5.chr6             142709544 8 - 175400573 ATGGGGCA
i panTro5.chr6             I 1 C 0
s panPan2.chr6             140861148 8 - 173848474 ATGGGGCA
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01000036v1     2378901 8 +   2807050 ATGGGGCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671825 8 - 122973662 ATGGGGCA
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             139296258 8 - 172585720 GTGGGATG
i rheMac8.chr4             I 1 I 9
s macFas5.chr4             138456574 8 + 170955103 GTGGGATG
i macFas5.chr4             I 1 I 9
s macNem1.NW_012013344v1      172787 8 +    407600 GTGGGATG
i macNem1.NW_012013344v1   I 1 I 9
s cerAty1.NW_012003702v1       45263 8 +    463628 ATGGGATG
i cerAty1.NW_012003702v1   I 1 I 9
s manLeu1.NW_012101600v1       43585 8 -    115496 GTGGGATG
i manLeu1.NW_012101600v1   I 1 I 9
s calJac3.chr4             138614646 8 - 171630274 GTGGGATG
i calJac3.chr4             I 1 I 9
s saiBol1.JH378315            172370 8 +   1154217 ATGGGATG
i saiBol1.JH378315         I 1 I 9
s micMur3.chr6               4430330 8 + 123392446 ATGGAATG
i micMur3.chr6             I 1 I 9
s proCoq1.NW_012150019v1       76460 8 +   1371726 ATGGAATG
i proCoq1.NW_012150019v1   I 1 I 9
s otoGar3.GL873550          15310265 8 -  18854210 GTGGGATG
i otoGar3.GL873550         I 1 I 9
s mm10.chr17                34342032 8 +  94987271 TCAGAAAG
i mm10.chr17               I 5 C 0
s canFam3.chr12             70360363 6 -  72498081 ACAAGG--
i canFam3.chr12            I 12 C 0
s dasNov3.JH569424            464291 8 +    935526 ATGGAATG
i dasNov3.JH569424         I 1 C 0
e cebCap1.NW_016107339v1    13999290 25 +  15232693 I
e aotNan1.NW_018508875v1      241606 18 +    446445 I
e chlSab2.chr17             39623415 18 +  71996105 I
e colAng1.NW_012115555v1      673981 18 -   1936607 I

a score=222867.000000
s hg38.chr6_KI270758v1_alt      9784 23 +     76752 --------TTCCATAGCAGAGACAGACTCCT
s panTro5.chr6             142709552 23 - 175400573 --------TTCCATAGCAGAGACAGACTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861156 23 - 173848474 --------TTCCATAGCAGAGACAGACTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378909 23 +   2807050 --------TTCCATAGCAGAGACAGACTCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671833 23 - 122973662 --------TTCCATAGCAGAGACAGACTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296275 23 - 172585720 --------TTCCATAGCCGAGACAGTCTCCA
i rheMac8.chr4             I 9 C 0
s macFas5.chr4             138456591 23 + 170955103 --------TTCCATAGCCGAGACAGTCTCCA
i macFas5.chr4             I 9 C 0
s macNem1.NW_012013344v1      172804 23 +    407600 --------TTCCATAGCCGAGACAGTCTCCA
i macNem1.NW_012013344v1   I 9 C 0
s cerAty1.NW_012003702v1       45280 23 +    463628 --------TTCCATAGCAGAGAGAGTCTCCA
i cerAty1.NW_012003702v1   I 9 C 0
s chlSab2.chr17             39623433 23 +  71996105 --------TTCCATAGCCGAGACAGTCTCCA
i chlSab2.chr17            I 18 C 0
s manLeu1.NW_012101600v1       43602 23 -    115496 --------TTCCATAGCCGAGACAGTCTCCA
i manLeu1.NW_012101600v1   I 9 C 0
s colAng1.NW_012115555v1      673999 23 -   1936607 --------TTCCATAGCCGAGACAGTCTCCA
i colAng1.NW_012115555v1   I 18 C 0
s calJac3.chr4             138614663 23 - 171630274 --------TTCCATAGCAGAGAAATAATCCT
i calJac3.chr4             I 9 C 0
s saiBol1.JH378315            172387  9 +   1154217 --------TTCCATAGC--------------
i saiBol1.JH378315         I 9 C 0
s aotNan1.NW_018508875v1      241624 23 +    446445 --------TTCCATAGCAGAGAAAGAATTCT
i aotNan1.NW_018508875v1   I 18 C 0
s micMur3.chr6               4430347 23 + 123392446 --------TTCCACAGCAGAGAAAGAATCCT
i micMur3.chr6             I 9 C 0
s proCoq1.NW_012150019v1       76477 23 +   1371726 --------TTCCATAGCAGAGAAAGAAGCCT
i proCoq1.NW_012150019v1   I 9 C 0
s otoGar3.GL873550          15310282 19 -  18854210 --------TTCTATGGAAG----AGAATCCT
i otoGar3.GL873550         I 9 C 0
s mm10.chr17                34342040 23 +  94987271 --------TTCCACAGCGGAGGAAGAACTTT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70360369 23 -  72498081 --------TTCCGTAGTAGAGAAAAGATCCT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464299 29 +    935526 TTCACAGGCTCTGGAACAGAAAAGGATCC--
i dasNov3.JH569424         C 0 C 0
e cebCap1.NW_016107339v1    13999290 25 +  15232693 I

a score=1293867.000000
s hg38.chr6_KI270758v1_alt      9807 93 +     76752 GTATGTTTTATTCCAGAGGCATTGCATGGTGATAATA-----AAATGA---TAGGAAATAGA-GGAAAATAGATACAGGAAAAGGCAATAGACAGGGAAGCC
s panTro5.chr6             142709575 93 - 175400573 GTATGTTTTATTCCAGAGGCGTTGCGTGGTGATAATA-----AAATGA---TGGGAAATAGA-GGAAAACAGATACAGGAAAAGGCAATAGACAGGGAAGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861179 93 - 173848474 GTATGTTTTATTCCAGAGGCGTTGTGTGGTGATAACA-----AAATGA---TGGGAAATAGA-GGAAAACAGATACAGGAAAAGGCAATAGACAGGGAAGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2378932 93 +   2807050 GTATGTTTTGTTCCAGAGGCATTGCATGGTGATAATA-----AAATGA---TAGGAAATAGA-GGAAAATAGATACAGGAAAAGGCAATAGACAGGGAAGCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671856 93 - 122973662 GTATGTTTTATTCCAGAGACGTTGCATGGTGATAATA-----AAATGA---TGGGAAATAGA-GGAAAATAGATACAGGAAAAGGCAACAGACAGGGAAGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296298 92 - 172585720 GTATGTTTTATTCCAGAGGTGTTGCATGATGATAATA-----AAATG----TGGGAAATAGA-GTAAAATAGATAGCGGAAAAGGCAATAGACAGGGAAGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456614 92 + 170955103 GTATGTTTTATTCCAGAGGCGTTGCATGGTGATAATA-----AAATG----TGGGAAATAGA-GGAAAATAGATACAGGAAAAGGCAATAGAGAGGGAAGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172827 92 +    407600 GTATGTTTTATTCCAGAGGCGTTGCATGGTGATAATA-----AAATG----TGGGAAATAGA-GGAAAATAGATACAGGAAAAGGCAATAGAGAGGGAAACC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45303 92 +    463628 GTATGTTTTATTCCAGAGGCATTGCATGGTGATAATA-----AAATG----TGGGAAATAGA-GGAAAATAGATACAGGAAAAGGCAATAGACAGGGAAGCC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623456 92 +  71996105 GTATGTTTTATTCCAGAGGCGTTGCATGGTGATAATA-----AAATG----TGGGAAATAGA-GGAAAATAGATAGCAGAAAAGGCAATAGACAGGGAAGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43625 92 -    115496 GTATGTTTTATTCCAGAGGCGTTGCATGGTGATAATA-----AAATG----TGGGAAATAGA-GGAAAATAGATACAGGAAAAGGCAATAGACAGGGAAACC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674022 92 -   1936607 GTATGTTTTATTCCGGAGGCGTTGCATGGTGATAATA-----AAATG----TGGGAAATAGA-GGAAAATAGATAGAGGAAAAGGCAATAGACAGGGAAGCC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614686 92 - 171630274 GTATGTTTTATTCCAGAGGCATTGCATGGTAATGATA-----AACTGA---TGGGAAATAAA-GGAAAACAAATACAGG-AAAGGCAATAGACGGGGAAGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172396 90 +   1154217 --ATGTTTTATTCCAGAGGCATTGGATGGCAACAATA-----AAATGA---CGGAAAATAAA-GGAAAACAAATACAGG-AAAGGCAATAGACAGGGAAGCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999315 92 +  15232693 GCGTGTTTTATTCCAGAGGCATTGGATGGCAATAATA-----AAATGA---TGGGAAATAAA-GGAAAACAAATACAGG-AAAGGCAATAGACAGGGAAGCC
i cebCap1.NW_016107339v1   I 25 C 0
s aotNan1.NW_018508875v1      241647 92 +    446445 GTATGTTTTATTCCAGAGGCATTGCATGGTAATGATA-----AAATGA---TGGGAAATAAA-GGAAAACAAATACAGG-AAAGGCAATAGACGGGGAAGCC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4430370 94 + 123392446 ATGGGGTTTATTCCAGAGGCGTTGCATGGTGACAATA-----AAATGA---TGGGAAATAGAGGGGAAACAGATGCAGGAAAGGGCAACAGACAGAGAAGCC
i micMur3.chr6             C 0 I 127
s proCoq1.NW_012150019v1       76500 94 +   1371726 ATGGGGTTTATTCCAGAGGGGTTGAATGGTGATAATA-----AAATGA---TGGGAAATAGAAGGAAAACAGATACAGGAAAGGGCAACAGACGGAGAAGCC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15310301 94 -  18854210 ATGGAGTTTATTCCAGAGGCAATGCATGTTAATAATA-----AAATAA---TGGAAAACAGAAGTAAAACTGATACAGGAAAGGGCAACAGTCAGGGAATCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34342063 75 +  94987271 GTGATATTTGTCACAGAGGAATT--------ATTATA-----AATGG----TGGAAGATAGA----ATATAGATACAGG------TGGGAGATGGAGAACCC
i mm10.chr17               C 0 I 1
s canFam3.chr12             70360392 94 -  72498081 ATGGGGTCTATTCCAGAGGCATTGCATGGTGATATTA-----AAATGATGGTAGAAAATGGA-GGAAAACGGATCCAAGAAGGGTCAGCAAAGAGAGAAT--
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464328 91 +    935526 -TATGGGTCATTCTAAGGGAATGGTATGGAAAAAAAATTTTTTAATGG---TGGAAAATGGA-GAGAAA------GAGGAAGGGTTGATAGACAGGGAAACC
i dasNov3.JH569424         C 0 I 1

a score=170650.000000
s hg38.chr6_KI270758v1_alt      9900 10 +     76752 AGCTAGATGT
s panTro5.chr6             142709668 10 - 175400573 AGCTAGATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861272 10 - 173848474 AGCTAGATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379025 10 +   2807050 AGCTAGATGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671949 10 - 122973662 AGCTAGATGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296390 10 - 172585720 AGCTAGATGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456706 10 + 170955103 AGCTAGATGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172919 10 +    407600 AGCTAGATGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45395 10 +    463628 AGCTAGATGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623548 10 +  71996105 AGCTAGATGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43717 10 -    115496 AGCTAGATGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674114 10 -   1936607 AGCTAGATGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614778 10 - 171630274 AGCTAGATGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172486 10 +   1154217 AGCTAGATGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999407 10 +  15232693 AGCTAGATGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241739 10 +    446445 AGCTAGATGT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       76594 10 +   1371726 AACTGGGTAT
i proCoq1.NW_012150019v1   C 0 I 35
s otoGar3.GL873550          15310395 10 -  18854210 AACCAGATGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34342139 10 +  94987271 AGCCAGACAT
i mm10.chr17               I 1 C 0
s canFam3.chr12             70360486 10 -  72498081 AACTAGATAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464420 10 +    935526 AACTAGATGT
i dasNov3.JH569424         I 1 C 0
e micMur3.chr6               4430464 127 + 123392446 I

a score=390433.000000
s hg38.chr6_KI270758v1_alt      9910 36 +     76752 -TAGAGTACGGAGCAATCGAAG-AGGCATATCCACACT
s panTro5.chr6             142709678 36 - 175400573 -TAGAGTACGGAGCAATCGAGG-AGGCATAACCACACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861282 36 - 173848474 -TAGAGTACGGAGCAATCGAGG-AGGCATAACCACACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379035 36 +   2807050 -TAAAGTACGGAGCAATCGAGG-AGGCATAACCACACT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671959 36 - 122973662 -TAGAGTACGGAGCAATCGAGG-AGGCATAATCACACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296400 36 - 172585720 -TAGAGTATGGAGCAATCGAGG-AGGCATAACCACACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456716 36 + 170955103 -TAGAGTATGGAGCAATCGAGG-AGGCATAACCACACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172929 36 +    407600 -TAGAGTATGGAGCAATCGAGG-AGGCATAACCACACT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45405 36 +    463628 -TAGAGTATGGAGCAATCGAGG-AGGCATAACCACACT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623558 36 +  71996105 -TAGAGTATGGAGCAATCAAGG-AGGCATAACCACCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43727 36 -    115496 -TAGAGTACGGAGCAATCGAGG-AGGCATAACCACACT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674124 36 -   1936607 -TAGAGTATGGAGCAATCGAGG-AGGCATAACCACACT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614788 36 - 171630274 -TAGAGCATGGAGCAATTGAGG-ACGCATAACCATGCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172496 36 +   1154217 -TAGAGCATGGAGCAATTGAGG-ATGCATAACCATGCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999417 36 +  15232693 -TAGAGCATGGAGCAATTGAGG-ATGCATAACCATGCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241749 36 +    446445 -TAGAGCATGGAGCCATTGAGG-ATGCATAACCATGCT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15310405 37 -  18854210 -TAGAGTATGGAGAGATCAGGGAAGGGATCACCACTCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34342149 26 +  94987271 -TAGATCA----------GAGA-ACCTGCCGCCATTCT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70360496 25 -  72498081 ------------CAGATCAGGA-AGACATCATTTTTCT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464430 38 +    935526 TAAGAGTATGGAGCGATCAGGGTTGGCATCACCATTCT
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4430464 127 + 123392446 I
e proCoq1.NW_012150019v1       76604 35 +   1371726 I

a score=1061773.000000
s hg38.chr6_KI270758v1_alt      9946 81 +     76752 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATGACTGCTTTCA-CTGAGGTCAAGGATT-GTAATATTGCCAGCT----TTGTAA
s panTro5.chr6             142709714 81 - 175400573 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATTACTGCTTTCA-CTGAGGTCAAGGATT-GGAATATTGCCAGCT----TTGTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861318 81 - 173848474 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATTACTGCTTTCA-CTGAGGTCAAGGATT-GGAATATTGCCAGCT----TTGTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379071 81 +   2807050 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATGACTGCTTTCA-CTGAGGTCAAGGATT-GTAATATTGCCAGCT----TTGTAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45671995 81 - 122973662 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATGACTGCTTTCA-CTGAGGTCAAGGATT-GGAATATTGCCAGCT----TTGTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296436 81 - 172585720 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATGACTGCCTTCA-CTGAGGTCAAGGACT-GGAATATTGCCAGCT----TTGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456752 81 + 170955103 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATCACTGCCTTCA-CTGAGGTCAAGGACT-GGAATATTGCCAGCT----TTGTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      172965 80 +    407600 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATCACTGCCTTCA-CTGAGGTCAAGGACT-GGAATATTGCCAGCT----TTGT-A
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45441 81 +    463628 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATGACTGCCTTCA-CTGAGGTCAAGGACT-GGAATATTGCCAGCT----TTGTGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623594 81 +  71996105 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATGACTGCCTTCA-CTGAGGTCAAGTACT-GGAATATTGCCAGCT----TTGTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43763 81 -    115496 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATGACTGCCTTCA-CTGAGGTCAAGGACT-GGAATATTGCCAGCT----TTGTAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674160 81 -   1936607 TGGGGTGGCTATAGGGCTGGAAAATGC-TGAAG-ATGACTGCTTTCA-CTGAGGTCAAGGACT-GGAATATTGCCAGCT----TTGTAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614824 81 - 171630274 TGGGGCGGCTACAGGGCTGGAACATGC-TGAAG-ATGATTGTTTTCAGCTGAGGTCAAGGATT-GGAATATTG-CAGCT----CTGTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172532 81 +   1154217 TGGGGTGGCTACAGGGCTGGAAAATGC-TGAAG-ATTATTGTTTTCAACTGAGGTCAAGGATC-GGAATACTG-CAGCT----TTGTAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999453 81 +  15232693 TGGGGTGGCTACAGGGCTGGAAAATGC-TAAAG-ATTATTGTTTTCAACTGAGGTCAAGGATT-GGAATACTG-CAGCT----TTGTAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241785 81 +    446445 TGGGGTGTCTACAGGGCTGGAAAATGC-TGAAG-ATGATTGTTTTCAGCTGAGGTCAAGGATT-GGAATATTG-CAGCT----TTGTGA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       76639 85 +   1371726 TGGGGTGGCTAAAGGCCTGGAAAATGC-TGAAG-ATGGCTGTTTTCA-CTGAGGTCAACGATT-GGAGTATTGCCAGCTTTTATTGTCA
i proCoq1.NW_012150019v1   I 35 C 0
s otoGar3.GL873550          15310442 82 -  18854210 TAGGGTGGCTAAAGGTCTGGAAATGGC-TGAAG-GTGGCTGGTTTCA-CTGAGATCAGCAATTGGGAGTATTGTCAGCT----TTGTAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34342175 73 +  94987271 ---TGAGGCT-TAATGCTGGAAACTGA-AGAAG-ATGA-GGTCTCCG-CTGAGATGAACAACT-GAAAGG--GGTAGCC----TCAGA-
i mm10.chr17               C 0 C 0
s canFam3.chr12             70360521 82 -  72498081 TAGAATATCTAAAAGTCTGGAAAATGCAAAAAA-ATGGTTGTCCTCA-GTGAGGTGAACAGTT-GGAGTATTGCCAGGT----TTATAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464468 82 +    935526 CGAGGTGGCTAAAGGGCTGGAGGGTCC-TGAAGAATGGTAGTCTTCA-TTTAGGTGAACCATG-CAGTAATTGCTAGTT----TAGTAA
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4430464 127 + 123392446 I

a score=1446847.000000
s hg38.chr6_KI270758v1_alt     10027 93 +     76752 AGCCATTAAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACATAGTTACCAAGGAGTTGAAGAT
s panTro5.chr6             142709795 93 - 175400573 AGCCATTGAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAAAAACACCATCACCTACAGCAAGACACACATAGTTACTAAGGAATTTAAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861399 93 - 173848474 AGCCATTGAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAGAAACACCATCACCTACAGCAAGACACACATACTTACTAAGGAATTTAAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379152 93 +   2807050 AGCCATTAAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACATAGTTACCAAGGGATTTAAGAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45672076 93 - 122973662 AGCCATTAAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACATAGTTACTAAGGAATTTAAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296517 93 - 172585720 AGTCATTAAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACATAGTTACTAAGGAGTTTAAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456833 93 + 170955103 AGTCATTAAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACATAGTTACTAAGGAGTTTAAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      173045 93 +    407600 AGTCATTAAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAGAAACACCGTCACCTATAGCAAGACACACATAGTTACTAAGGAGTTTAAGAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45522 93 +    463628 AGTCATTAAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACATAGTTACTAAGGAGTTTAAGAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623675 89 +  71996105 AGTCCTTAAA-GCAGAAGTTTCTTCAGCGATCT----TCTAAGAAATACCATCACCTATAGCAAGACACACATAGTTACTAAGGAGTTTAAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43844 93 -    115496 AGTCATTAAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAGAAACACCGTCACCTATAGCAAGACACACATAGTTACTAAGGAGTTTAAGAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674241 93 -   1936607 AGTCATTAAA-GCAGAAGTTTCTTCAGTGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACATAGTTACTAAGGAGTTTAAGAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614905 91 - 171630274 AGCTTTTTTA---AAAAGTTTCTTCCATGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACATAGTTACTAAGGAGTTTAAGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172613 91 +   1154217 AGCTTTTTAA---AGAAGTTTCTTCCATGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACACAGTTACTACGGAGTTTAGGAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999534 94 +  15232693 AGCTTTTTAAAGCAGAAGTTTCTTCCATGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACGTAGTTACTAAGGAGTTTAAGAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241866 94 +    446445 AACTTTTTAAAGCAGAAGTTTCTTCCATGATCTTCTCTCTAAGAAACACCATCACCTATAGCAAGACACACATAGTTACTAAGGAGTTTAAGAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4430591 93 + 123392446 AGCTATTAAA-GCAGAAATTTCTCCAGTGGTCTTCTCTCTGAGAAAGGTCACCACCTGTAACAGCACACACATAGTTACTAAAGAGTTTAAGAT
i micMur3.chr6             I 127 I 182
s proCoq1.NW_012150019v1       76724 92 +   1371726 -GCTATTGAA-GCAGAAATTTCTTCAGTGGTCTTCTCTCTGAGAAAGGCCACCACCTGTAACAGGATGCACATAGTTGCTAAAGAGTTTAAGAT
i proCoq1.NW_012150019v1   C 0 I 2
s otoGar3.GL873550          15310524 90 -  18854210 AACTATTAAA-GCAGAAATTTTTTCAGTGG---TCTCCCTGAGAAACACCATCACCTGTAATAGGACACACATTGTTAGTAAACAGTTTAAGAT
i otoGar3.GL873550         C 0 I 2
s mm10.chr17                34342248 86 +  94987271 CGCTGTCACA-GC--AAGTTTCTTCACTGAACTT-----TAACTGAAGGCATTGCCTGTGGTGGGACACACAAAATTATCAAGGAGGTCACAGT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70360603 92 -  72498081 AGCTATTGAA-GCATAAATTTCTTCACTGATCTTCTCTCTAGGAAACTCCATTGCCTGTAGCAGGACACGCATAGTTACTAAAGAGTT-AAGAT
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            464550 89 +    935526 AGCTACTAAA-AAGCAAATTTCTTCATCAATCTTCTCTCTAAGAAAGATCATCACCTGTAGCGGGGCACATATAGT----AAAGAATTTAAAAT
i dasNov3.JH569424         C 0 C 0

a score=2199805.000000
s hg38.chr6_KI270758v1_alt     10120 186 +     76752 CAGTTTTGAGCTCCTTGCTTCAGATTCCTTCCTCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAATTCTTTCAATGTTCATCT--------------------AACCTTTCCAACATGAA------CTAACTGTATACCCTACTCTCCAACTGAACAT-AATAAGCAA----------CCATGCTTTACC------TTTTTTTAGAGTTTCTCATACTACAT--TTGAGACTA
s panTro5.chr6             142709888 182 - 175400573 CAGTTTTGAGCCCCTTGCTTCAGATTCCTTCCTCTTTTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAATTC----AATGTTCATCT--------------------AACCTTTCCAACATGAA------CTAACTGTATACCCCACTCTCCAACTGAACAT-AATAAGCAA----------CCATGCTTTACC------TTTTTTTAAAGTTTCTGATACTACAT--TTGAAACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861492 182 - 173848474 CAGTTTTGAGCCCCTTGCTTCAGATTCCTTCCTCTTTTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAATTC----AATGTTCATCT--------------------AACCTTTCCAACATGAA------CTAACTGTATACCCTACTCTCCAACTGAACAT-AATAAGCAA----------CCATGCTTTACC------TTTTTTTAAAGTTTCTGATACTACAT--TTGAAACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379245 186 +   2807050 CAGTTTTGAGCTCCTTGCTTCAGATTCCTTCCTCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAATTCTTTCAATGTTCATCT--------------------AACCTTTCCAACATGAA------CTAACTGTATACCCTACTCTCCAACTGAACAT-AATAAGCAA----------CCATGCTTTACC------TTTATTTAGAGTTTCTCATACAACAT--TTGAGACTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45672169 186 - 122973662 CAGTTTTGAGCTCCTTGCTTCAGATTCCTTCCTCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAATTCTTTCAACGTTCATCT--------------------GACCTTTCCAACATGAA------CTAACTGTATACCCTACTCTCCAACTGAACAT-AATAAGCAC----------CCATGCTTTACC------TTTTTTTACAGTTTCTGATACTACAT--TTGAGACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296610 186 - 172585720 GAGTTCTGAGCTCTTTGCTTCAGATTCCTTCCTCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAAGTCTTTTAATGTTCATCT--------------------AAACTTTCCAACATGAA------TTAACTGTATACCCTACTCTCCATCTGAACAT-AATAAGCAA----------CCACGCTTTACC------ATTTTTTAGAGTTTCTGATACTACAT--TTGAGACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138456926 186 + 170955103 GAGTTCTGAGCTCTTTGCTTCAGATTCCTTCCTCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAAGTCTTTTAATGTTCATCT--------------------AAACTTTCCAACATGAA------TTAACTGTATACCCTACTCTCCATCTGAACAT-AATAAGCAA----------CCACGCTTTACC------ATTTTTTAGAGTTTCTGATACTACAT--TTGAGACGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      173138 186 +    407600 GAGTTCTGAGCTCTTTGCTTCAGATTCCTTCCTCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAAGTCTTTTAATGTTCATCT--------------------AAACTTTCCAACATGAA------TTAACTGTATACCCTACTCTCCATCTGAACAT-AATAAGCAA----------CCACGCTTTACC------ATTTTTTAGAGTTTCTGATACTACAT--TTGAGACTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45615 186 +    463628 GAGTTCTGAGCTCTTTGCTTCAGATTCCTTCCTCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAAGTCTTTTAATGTTCATCT--------------------AAACTTTCCAACATGAA------TTAACTGTATACCCTACTCTCCATCTGAACAT-AATAAGCAA----------CCATGCTTTACC------ATTTTTTAGAGTTTCTGATACTACAT--TTGAGACTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623764 186 +  71996105 GAGTTCTGAGCTCTTTGCTTCAGATTCCTTCCTCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAAGTATTTTAATGTTCATCT--------------------AAACTTTCCAACATGAA------TTAACTGTCTACCCTACTCTCCATCTGAACAT-AATAAGCAA----------CCATGCTTTACC------ATTTTTTAGAGTTTCTGATACTACAT--TTGAGACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       43937 186 -    115496 GAGTTCTGAGCTCTTTACTTCAGATTCCTTCCTCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAAGTCTTTTAATGTTCATCT--------------------AAACTTTCCAACATGAA------TTAACTGTATACCCTACTCTCCATCTGAACAT-AATAAGCAA----------CCACGCTTTACC------ATTTTTTAGAGTTTCTGATACTACAT--TTGAGACTA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674334 186 -   1936607 GAGTTCTGAGCTCTTTGCTTCAGATTCCTTCCTCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTGCAAAAGTCTTTTAATGTTCATCT--------------------AACCTTTCCAACATGAA------TTAACTGTATACCCTACTCTCCATCTGAACAT-AATAAGCAA----------CCACGCTTTACC------ATTTTTTAGAGTTTCTGATACTACAT--TTGAGACTA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138614996 179 - 171630274 GAGTTCTGAGCTCTTTGCTTCAGATTCCT---TCTTTTCTCTT---------------------------------------------AATCCTTTGACTTTACAAAAATCTTTCAATGTTCATCT--------------------AACCTTTCCAACAT----------CAGCTATGTACCTTGCTCTCCAACTGAATGT-AATAAGCAA----------CCATGCTTTACC------TTATTTTACAGTTTCTGATACTACAT--TTGAGACTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172704 179 +   1154217 GAGTTCTGAGCTCTTTGCTTCAGATTCCT---TCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTACAAAAGTCTTTCAATGTTCATCT--------------------AACCTTTCCAACAT----------CAACTATATACCTTACTCTCCAACTGAACAT-AATAAGCAA----------CTATGATTTACC------TTATTTTACAGTTTCTGATACTACAT--TTGAGACTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999628 179 +  15232693 GAGTTCTGAGCTCTTTGCTTCAGATTCCT---TCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTACAAAAGTCTTTGAATGTTCATCT--------------------AACCTTTCCAACAT----------CAACTATATACCTTACTCTCCAACTGAACAT-AATAAGCAA----------CTATGATTTACC------TTATTTTACAGTTTCTGATACTACAT--TTGAGACTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      241960 179 +    446445 GAGTTCTGAGCTCTTTGCTTCAGATTCCT---TCTTCTCTCTT---------------------------------------------AATCCTTTGACTTTACAAAAGTCTTTCAATGTTCATCT--------------------AACCTTTCCAACAT----------CAACTATATACCTTACTCTCCAACTGAACAT-AATAAGCAA----------CCGTGCTTTACC------TTATTTTACAGTTTCTGATACTACAT--TTGAGACTA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       76818 182 +   1371726 ATATTTTGAGCTCTTCCCTTCAAATTACTTTCTCTTCTCTTTT---------------------------------------------AATCCTTTGACTTTG-GAAAAGTTTTTAATATTGATCT--------------------GAGCTTTCTAACAT----------GAAATGTATGCCCTACTCTCCAAGTGAACATGAATAAGCAA----------CCAGGCTTTACC------TTTTCTTAGAGCTTCCAATAGCACTT--TTCAGACTG
i proCoq1.NW_012150019v1   I 2 C 0
s otoGar3.GL873550          15310616 184 -  18854210 GTCTTTTGAGCTCTTTCCTTCAAATTCCATCCTC-TCTCTCTT---------------------------------------------AATCATTTGACTTTA-GAAAGTCTTTTAATATTCGTCT--------------------GAACTTTCTAACAT----------GAAGTGTATACTCTGCTCTCCAACTGAACATGAATAGGCAA----------CCATGCTTTACCTTTTTTTTTTTTTAGAGTTTCTGATTGCATTTGGTCCC-----
i otoGar3.GL873550         I 2 C 0
s mm10.chr17                34342334 169 +  94987271 AAGAACTGAGAGCC---CTTCATCTCCCTGCCTGGTCCCTCTT---------------------------------------------GGTCATGTGACTCTGAAAAAGTCCTTAAATGTTGATTT--------------------GAG-TTCCCAACAT----------GAGCCCCAAACCTTATTTTGC--CTGAAGAT-------CAA----------C-ATGCATTGCC------TCTTCCAGATCCCTTTAGAAGCATCT--TTCAGACTA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70360697 257 -  72498081 TTATTTTAAGCTCTTT-TTTCAGATTCATTCGTCTTCTCCCTTAAACCTTTGACTTTGGAACCCCTTTAGAAAAAAAAGAAAAAGAAAAATCCTTTGACTTTGGAAGTGTCTCTAAATATTCACTTGACCTCTATCTAGTAAATAGAAACTTTCTAGCAT----------GAATTGCATCTCCCACTCTCCAAGTGAACATAAATGAGCAGACCAGAGCTTCCAGAGCTTACG------CTTTCTTAGAAGTTTCAACACCACTT--TTCAGATTG
i canFam3.chr12            I 2 C 0
s dasNov3.JH569424            464639 183 +    935526 GAAAATTAAAAT-----GAAAAGATTCCCACCTCTTCTCTCTT---------------------------------------------ACTCCTTTCCCTTTGGAAG----TCTCACTATTCATCT--------------------GACCT--CCAATAAACAGAGCTTTTCAAAGTGAACCCTATTCTCCAAGAGGACATGAATGAGCAGG---------CCATGGTTTACC------TTCTCTTAGTGCTGCAGACACTACTT--CTCAAATTG
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4430684 182 + 123392446 I

a score=1842748.000000
s hg38.chr6_KI270758v1_alt     10306 123 +     76752 AAGAAGCAAAAGCAGGCATTGGCCTCTAAGAGATTCCCATTTCATGCAATGAATTGAC---CCTAACCTGAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGCCCCAGGAAATACA
s panTro5.chr6             142710070 123 - 175400573 AAGGAGCAGAAGCAGGCATTGGCCTCTAAGAGATTCCCATTTCATGCAATGAATTGAC---CCTAACCTGAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGCCCCAGAAAATACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861674 123 - 173848474 AAGGAGCAGAAGCAGGCATTGGCCTCTAAGAGATTCCCATTTCATGCAATGAATTGAC---CCTAACCTGAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGCCCCAGAAAATACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379431 123 +   2807050 AAGAAGCAAAAGCAGGCATTGGCTTCTAAGAGATTCCCATTTCATGCAATGAATTGAC---CCTAACCTGAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGCCCCAGGAAATACA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45672355 123 - 122973662 AAGGAGCAAAAGCAGGCATTGGCCTCTAAGAGATTCCCATTTCATGCAATGAATTGAC---CCTAACCTGAAAGGAGCCAGGATCTGGGAATGCTTCTGAACTGATGACCTGCCCCAAGAAATACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296796 123 - 172585720 AAGGAGCAAAAGCAGGCATTGGCCTCTAAGAGATTCCCATTTCATACAATGGATCTAC---CCTAAACCCAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGTCCCATGAAATACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138457112 123 + 170955103 AAGGAGCAAAAGCAGGCATTGGCCTCTAAGAGATTCCCATTTCATACAATGGATCTAC---CCTAAACCCAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGTCCCATGAAATACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      173324 123 +    407600 AAGGAGCAAAAGCAGGCATTGGCCTCTAAGAGATTCCCATTTCATACAATGGATCTAC---CCTAAACCCAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGTCCCATGAAATACA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45801 123 +    463628 AAGGAGCAAAAGCAAGCATTGGCCTCTAAGAGATTCCCATTTCATACAATGGATCTAC---CCTAAACCCAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGTCCCATGAAATACA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39623950 123 +  71996105 AAGGAGCAAAAGCAGGCATTGGCCTCTAAGAGATTCCCATTTCATACAATGGATCTAC---CCTAAACCCAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGTCCCATGAAATACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       44123 123 -    115496 AAGGAGCAAAAGCAGGCATTGGCCTCTAAGAGATTCCCATTTCATACAATGGATCTAC---CCTAAAGCCAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGTCCCATGAAATACA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674520 123 -   1936607 AAGGAGCAAAAGCAGGCATTGGCCTCTAAGAGATTCCCATTTCATACAATGGATCTAC---CCTAAACCCAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGACCTGTCCCATGAAATACA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138615175 123 - 171630274 AAGGGGCAAAAGAAGGCATTGACCTCTAAGAGATTCCCATTTTATGCAATGAATCTAC---CCTCACTCCAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGATCTGCCCCAGGAAATATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            172883 123 +   1154217 AAGGAGCAAAAGAAGGCACTGGTCTCTAAGAGATTCCCATGTTATGCAATGAATCTAC---CTTCATTCCAAAGGAGCCGGGATCTGGAAATGCTTCTGAACTGATGATCTGCCCCAGGAAATATA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999807 123 +  15232693 AAGAAGCAAAAGAAGGCATTGGCCTCTAAGAGATTCCCATTTTATGCAATGAATCTAC---CCTCATTCCAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGATCTGCCCCAGGAAATATA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      242139 123 +    446445 AAGGAGCAAGAGAAGGTATTGGCCTTTAAGAGATTCCCATTTTATGCAATGAATCTAC---CCTCACTCCAAAGGAGCCAGGATCTGGAAATGCTTCTGAACTGATGATCTGCCCCAGGAAATATA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4430866 123 + 123392446 AAGGAGCAAAACCAAGCACTGGCCTCTAAGAGATTTCCATTCCATGCAGTGAATCTAT---CCTAACCCCGAAGGAGCCAGGCTCTGGAAATGCTTCTGAACTGCCGGCCTGCCTCAGGAAATACA
i micMur3.chr6             I 182 I 135
s proCoq1.NW_012150019v1       77000 119 +   1371726 GAGGAGCAAAACCAAGCATTGGCCTCTAAGAGATTTCCATTTCATGCCATGAATCTAC---CCTAACCCCAAAGGAGCCAGGCTCCGGAAATGCTTCTGAA----CAGACAGCCTCAGGAAATACA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15310800 105 -  18854210 ------------------TTGACCTCTAAGAGATTTCCATTTCATGCAGTCAATCTAC---CCCAACCCCTAAGGAGCCAAGCTCTGTAAAACCTTCTGAATTGATGGCCTGCCTGAGGAAATAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34342503 114 +  94987271 AAGGATCAATACTAGTGATGGAC--TCAGGAGATTCCCAGTTCATGCCACAGATCCAAGAGCTTAACTCCAAAGGCTTCAGACTCTGGAGCTGTGGCTG----------TTGCCTTAAGACCCAGA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70360954 122 -  72498081 GAGAAGAAAAAACAGACATTGGCCTTAAGGAGATTTTTATTT-ATGCAGTGAATTTAT---CCTAACCCCCAAAGAGCCAAGCTCTGGAAATATTTCTGAGCTGAGGTACTGTTTCAGAAAATATA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464822 108 +    935526 GGGGAGTGAAAACACACATTAGCCTCCAAGGGATTTCTACTT---------------A---ACTGAAAAGAAGGGAGCCAGACTCTGGGAATGCTTCCCAATTGATGGCCTGCCTGAGGAAATTTA
i dasNov3.JH569424         C 0 C 0

a score=466715.000000
s hg38.chr6_KI270758v1_alt     10429 59 +     76752 AGCTAGGATGTGCCCAAATCTTGAGGCTTATTTTTCTAGATCCCTAGACTCAGTATTTT
s panTro5.chr6             142710193 59 - 175400573 AGCTAGGATGTGCCCAAATCTTGAGGCTTATTTTTCTAGATCCCTAGACTCAGTATTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861797 59 - 173848474 AGCTAGGATGTGCCCAAATCTTGAGGCTTATTTTTCTAGATCCCTAGACTCAGTATTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379554 59 +   2807050 AGCTAGGATGTGCCCAAATCTTGAGGCTTATTTTTCTAGATCCCTAGACTCAGTATTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45672478 59 - 122973662 AGCTAGGATGTGCCCAAATCTTGAGGCTTATTTTTCTAGATCCCTAGACTCAGTATTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296919 45 - 172585720 AGCTAGGATGTGCCTAAATCTTGAGGCTTATTTTTCTAGATCCCT--------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138457235 45 + 170955103 AGCTAGGATGTGCCTAAATCTTGAGGCTTATTTTTCTAGATCCCT--------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      173447 45 +    407600 AGCTAGGATGTGCCTAAATCTTGAGGCTTATTTTTCTAGATCCCT--------------
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45924 45 +    463628 AGCTAGGATGTGCCTAAATCTTGAGGCTTATTTTTCTAGATCCCT--------------
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39624073 45 +  71996105 AGCTAGGATGTGCCTAAATCTTGAGGCTTATTTTTCTAGATCCCT--------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       44246 45 -    115496 AGCTAGGATGTGCCTAAATCTTGAGGCTTATTTTTCTAGATCCCT--------------
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674643 45 -   1936607 AGCTAGAATGTGCCTAAATCTTGAGGTTTATTTTTCTAGATCCCT--------------
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138615298 59 - 171630274 AGCTAGGATGTGCCCCAATCTTGAGGTTTATATTTCTAGATACTTAGACTCCGTATTCT
i calJac3.chr4             C 0 I 44
s saiBol1.JH378315            173006 41 +   1154217 AGCTAGGATGTGCCCAAATCTTGAGGTTTATATTTCTGGAT------------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    13999930 59 +  15232693 AGCTAGGATGTGCCCAAATCTTGAGGTTTATATTTCTGGATACTTAGACTCAGTATTCT
i cebCap1.NW_016107339v1   C 0 I 30
s aotNan1.NW_018508875v1      242262 59 +    446445 AGCTAGGATGTGCCCAAATCTTGAGGTTTATATCTCTAGATACTTAGACTCAGTATTTT
i aotNan1.NW_018508875v1   C 0 I 30
s proCoq1.NW_012150019v1       77119 44 +   1371726 AGCCAGGAACTGCCC-------AAGGCTTATTCTCCTAGATCGCTGGACTC--------
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15310905 48 -  18854210 AGCCAGGAAAAACCT-------GAGGC--ATTTTCCTAGATTACTGAATTCTGGATT--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34342617 46 +  94987271 AGCTCTG-CATGCCTGAGCCTTGAGACTAACTTTCCTATGCCACAAG------------
i mm10.chr17               C 0 C 0
s canFam3.chr12             70361076 22 -  72498081 TACCAGAAAGTACTCAAAGCTT-------------------------------------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464930 58 +    935526 -AGTGTGGGGCTCTCAAATCTGAAAGTTGAGTTTCCTAGATCACTAGACTCAGTAACTG
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4430989 135 + 123392446 I

a score=1000.000000
s hg38.chr6_KI270758v1_alt     10488 1 +     76752 C
s panTro5.chr6             142710252 1 - 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861856 1 - 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379613 1 +   2807050 C
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45672537 1 - 122973662 C
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17                34342663 0 +  94987271 C
e manLeu1.NW_012101600v1       44291 0 -    115496 C
e micMur3.chr6               4430989 135 + 123392446 I
e cebCap1.NW_016107339v1    13999989 30 +  15232693 I
e proCoq1.NW_012150019v1       77163 0 +   1371726 C
e aotNan1.NW_018508875v1      242321 30 +    446445 I
e calJac3.chr4             138615357 44 - 171630274 I
e canFam3.chr12             70361098 0 -  72498081 C
e saiBol1.JH378315            173047 0 +   1154217 C
e macFas5.chr4             138457280 0 + 170955103 C
e rheMac8.chr4             139296964 0 - 172585720 C
e macNem1.NW_012013344v1      173492 0 +    407600 C
e chlSab2.chr17             39624118 0 +  71996105 C
e cerAty1.NW_012003702v1       45969 0 +    463628 C
e otoGar3.GL873550          15310953 0 -  18854210 C
e dasNov3.JH569424            464988 0 +    935526 C
e colAng1.NW_012115555v1      674688 0 -   1936607 C

a score=35036.000000
s hg38.chr6_KI270758v1_alt     10489 58 +     76752 TAGATCCCTAGACTCCATATTCTAATGTATTTTCTAGATCCCTAGAC----------TCAGTATTCTA
s panTro5.chr6             142710253 58 - 175400573 TAGATCCCTAGACTCCATATTCTAATGTATTTTCTAGATCCCTAGAC----------TCAGTATTCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861857 58 - 173848474 TAGATCCCTAGACTCCATATTCTAATGTATTTTCTAGATCCCTAGAC----------TCAGTATTCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379614 58 +   2807050 TAGATCCCTAGACTCCATATTCTAATGTATTTTCTAGATCCCCAGAC----------TCAGTATTCTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45672538 58 - 122973662 TAGATCCCTAGACTCAGTATTCTAATGTATTTTCTAGATCCCTAGAC----------TCAGTATTCTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296964 15 - 172585720 -------------------------------------------AGAC----------TCAGTATTCTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138457280 15 + 170955103 -------------------------------------------AGAC----------TCAGTATTCTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      173492 15 +    407600 -------------------------------------------AGAC----------TCAGTATTCTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45969 15 +    463628 -------------------------------------------AGAC----------TCAGTATTCTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39624118 15 +  71996105 -------------------------------------------AGAC----------TCAGTATTCTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       44291 15 -    115496 -------------------------------------------AGAC----------TCAGTATTCTA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674688 15 -   1936607 -------------------------------------------AGAC----------TCAGTATTCTA
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            173047 19 +   1154217 ---------------------------------------ACTTAGAC----------TCAGTATTCTA
i saiBol1.JH378315         C 0 C 0
s proCoq1.NW_012150019v1       77163  9 +   1371726 -----------------------------------------------------------AGTATCCTA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15310953  9 -  18854210 -----------------------------------------------------------AGTATTCTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34342663 14 +  94987271 --------------------------------------------GAC----------ACAGTGTTCTC
i mm10.chr17               C 0 C 0
s canFam3.chr12             70361098 26 -  72498081 ---------------------------------------TCCTAGATCATTGATTCATTAGTATT---
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464988  1 +    935526 -----------------------------------------------------------A--------
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4430989 135 + 123392446 I
e cebCap1.NW_016107339v1    13999989 30 +  15232693 I
e aotNan1.NW_018508875v1      242321 30 +    446445 I
e calJac3.chr4             138615357 44 - 171630274 I

a score=172743.000000
s hg38.chr6_KI270758v1_alt     10547 15 +     76752 ATGTGAAACAATGGT
s panTro5.chr6             142710311 15 - 175400573 ATGTGAAACAATGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861915 15 - 173848474 ATGTGAAACAATGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379672 15 +   2807050 ATGTGAAACAATGGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45672596 15 - 122973662 ATGTGAAACAATGGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296979 15 - 172585720 ATGTGAAACAATGGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138457295 15 + 170955103 ATGTGAAACAATGGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      173507 15 +    407600 ATGTGAAACAATGGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45984 15 +    463628 ATCTGAAACAATGGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39624133 15 +  71996105 ATGTGAAACAATGGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       44306 15 -    115496 ATGTGAAACAATGGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674703 15 -   1936607 ATGTGAAACAATGGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138615401 15 - 171630274 ATATGAAACAATGTA
i calJac3.chr4             I 44 I 14
s saiBol1.JH378315            173066 15 +   1154217 ATATGAAACAATGTA
i saiBol1.JH378315         C 0 I 14
s proCoq1.NW_012150019v1       77172 15 +   1371726 ATGTGAAACGGTGGT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15310962 15 -  18854210 ATTTGAAACCACGGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34342677 15 +  94987271 GTGTGAGTCGACAGT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70361124 15 -  72498081 ATGTGAAACAATAGT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            464989 14 +    935526 ATGTGAAACAATAT-
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4430989 135 + 123392446 I
e cebCap1.NW_016107339v1    13999989 30 +  15232693 I
e aotNan1.NW_018508875v1      242321 30 +    446445 I

a score=854313.000000
s hg38.chr6_KI270758v1_alt     10562 69 +     76752 TTTAGGT--------ACTGGAGATGATTTCTAAGACTGGAGCCGTGATCAAGGTGCCCGTCTATAGAAAGGGATGAC
s panTro5.chr6             142710326 69 - 175400573 TTTAGGT--------ACTGGAGATGATTTCTAAGACTGGAGCCATGATCGAGGTGCCCGTCTATGGAAAGGGATGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861930 69 - 173848474 TTTAGGT--------ACTGGAGATGATTTCTAAGACTGGAGCCATGATCGAGGTGCCCGTCTATGGAAAGGGATGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379687 69 +   2807050 TTTAGGT--------ACTGGAGATGATTTATAAGACTGGAGCCGTGATCAAGGTGCCCGTCTATAGAAAGGGATGAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45672611 69 - 122973662 TTTAGGT--------ACTGGAGATGATTTCTAAGACTGGAGCCGTGATCGAGGTGCCTGTCTATGGAAAGGGATGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139296994 69 - 172585720 TTTAGGT--------TCTGGAGATGATTTCTAAGACCGGAGCCATGACTGAAGTGCCCATCTATGGAAAGGGATGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138457310 69 + 170955103 TTTAGGT--------TCTGGAGATGATTTCTATGACCGGAGCCATGACTGAAGTGCCCATCTATGGAAAGGGATGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      173522 69 +    407600 TTTAGGT--------TCTGGAGATGATTTCTAAGACCGGAGCCATGACTGAAGTGCCCATCTATGGAAAGGGATGAC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       45999 69 +    463628 TTTAGGT--------TCTGGAGATGATTTCTAAGACCGGAGCCATGACTGAAGTGCCCATCTATGGAAAGGGATGAC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39624148 69 +  71996105 TTTAGGT--------TCTGGAGATGATTTCTAAGACCGGAGCCATGACTGAAGTGCCCATCTATGGAAAGGGATGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       44321 69 -    115496 TTTAGGT--------TCCGGAGATGATTTCTAAGACCGGAGCCATGACTGAAGTGCCCATCTATGGAAAGGGATGAC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674718 69 -   1936607 TTTAGGT--------TCTGGAGATGATTTCTAAGACCGGAGCCATGACTGAAGTGCCCATCTATGGAAAGGGATGAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138615430 69 - 171630274 TTTAGGT--------ACTGAAGACAATCTCCAAGACTGGAGCCGTGATCTGGGTGCCCATCTATAGAAGGGGATGAG
i calJac3.chr4             I 14 C 0
s saiBol1.JH378315            173095 69 +   1154217 TTTAGGT--------ACTGGAGACAATTTCTAAGACTGGAGCCGTGATCTGGGCGCCCATCTATGGAAAGGGATGAG
i saiBol1.JH378315         I 14 C 0
s cebCap1.NW_016107339v1    14000019 69 +  15232693 TTTAGTT--------ACTGCAGACAATTTGTAAGACTGGAGCCATGATCTGGGCGCCCATCTATGGAAAGGGATGAG
i cebCap1.NW_016107339v1   I 30 C 0
s aotNan1.NW_018508875v1      242351 69 +    446445 TTTAGGT--------ACTGAAGACAATTTCTAAGGCTGGAGCCGTGATCTGGGCACCCATCTACGGAAAGGGATGAG
i aotNan1.NW_018508875v1   I 30 C 0
s proCoq1.NW_012150019v1       77187 69 +   1371726 CTTAGGT--------ACTGGAAAGGATTTGCAAGACTGAAGGTGTGGTATAGGTGCACATCTATGGAAAGGGCTGAG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15310977 77 -  18854210 CTTAGGTACTGGGGCACTGGAGATGATTTCCATGATTGAAAGTGTGTTCTAGGTGCACATCTACAGAAATGCCTGAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34342692 65 +  94987271 CTTGGGA--------GCTGAAGAAAATTTCCAAGACTCACAAC-TGGTCCAGGAACA---CCCTAGGAAGAGATCAC
i mm10.chr17               C 0 C 0
s canFam3.chr12             70361139 69 -  72498081 ATTGGGT--------AGTGGAGATAATTTCTAAGACTGAGATTGTGGTATAGGTGCACATGTATCGGAGAGAATATG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            465003 68 +    935526 CTTAGGT--------GCTAGATATAATTTTCAAGATTGAAGGTGTGGCCTGGTTGCACATCTATGGAATGGAATAT-
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4430989 135 + 123392446 I

a score=7034326.000000
s hg38.chr6_KI270758v1_alt     10631 447 +     76752 AGACCCTGAAGCTTTGGGATACCAGATGATACGAATGTCTGATTC-GTTCTAGCAAAGAGAAATCAAGAGCCACATCTGTTCCT-ACC-TTGTCTCTTAAATGCATTACAT---------TTCCTT-TCC-CCACC----CTGTTTTCCTCCCTCAGATA------TCTCCATATACGTCTTCCTCTGACCACACCTAACTCACCTCCATGTGCCTTACAGAG------GCCC---CCTGCGTTCTGCTGCATTGCTTTTGCGCAATCCCTTGATGATGAAGATGGTCCCAATAATGATGCCCACCAGACCCACAGTCAGGCCCAGGGCACACACCACGTTCTCTGTAGTCTCTGGGAGAGGGCTTGGAGCATCAAACTCTG-GGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAATGTAGGGTTCTT------AATAAAGAGAAAAGTTATTCATAGA
s panTro5.chr6             142710395 447 - 175400573 AGACCCTGAAGCTTTGGGATACCAGATGATACCAATGTCTGATTC-GTTCTAGCAAAGAGAAATCAAGAGCCACATCTGTTCCT-ACC-ATGTCTCTTAAATGCATTACAT---------TTCCTT-TCC-CCACC----CTGTTTTCCTCCCTCAGATA------TCTCCATATATGTCTTCCTCTGACTGCGCCTAACTCACCTCCGTGTGCCTCACAGAG------GCCC---CCTGCGTTCTGCTGCATTGCTTTTGCGCACACCCTTGATGATGAAGATGGTCCCAATGATGATGCCCACCAGACCCACAGTCAGGCCCAGGGCACACACCACGTTCTCTGTAGTCTCTGGGAGAGGGCTTGGAGCATCAAACTCTG-GGGGGAAATAAGGCAGAATACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAGTGTAGGGTACTT------AATAAAGAGAAAAGTTATTCATAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140861999 447 - 173848474 AGACCCTGAAGCTTTGGGATACCAGATGATACCAATGTCTGATTC-GTTCTAGCAAAGAGAAATCAAGAGCCACATCTGTTCCT-ACC-ATGTCTCTTAAATGCATTACAT---------TTCCTT-TCC-CCACC----CTGTTTTCCTCCCTCAGATA------TCTCCATATATGTCTTCCTCTGACCACACCTAACTCACCTCCACGTGCCTTACAGAG------GCCC---CCTGCGTTCTGCTGCATTGCTTTTGCGCACTCCCTTGATGATGAAGATGGTCCCAATAATGATGCCCACCAGACCCACAGTCAGGCCCAGGGCACACACCACATTCTCTGTAGTCTCTGGGAGAGGGCTTGGAGCATCAAACTCTG-GGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAATGTAGGATTCTT------AATAAAGAGAAAAGTTATTCATAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2379756 442 +   2807050 AGACCCTGAAGCTTTGGGATACCAGATGATACCAATGTCTGATTC-GTTCTAGCAAAGAGAAATCAAGAGCCACATCTGTTCCT-ACC-TTGTCTCTTAAATGCATTACAT---------TTCCTT-TCC-CCACC----CTGTTTTCCTCCCTCAGATA------TCTCCATATATGTCTTCCTCTGACCACACCTAACTCACCTCCATGTGCCTTACAGAG------GCCC---CCTGCGTTCTGCTGCATTGCTTTTGCGCACTCCCTTGATGATGAAGATGGTCCCAATGATGATGCCCACCAGACCCACAGTCAGGCCCAGGGCACACACCACGTTCTCTGTAGTCTCTGGGAGAGGGCTTGGAGCATCAAACTCT--GGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAATGTAGGGTTCTT------AAtaaagagaaaagtt----ataga
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45672680 447 - 122973662 AGACCCTGAAGCTCTGGGATGCCAGATGATACCAATGTCTGATTC-GTTCTGGCAAAGAGAAATCAAGAGCCACATCTGTTCCT-ACC-TTGTCTCTTAAATGCATTATAT---------TTCCTT-TCC-CCACC----CTGTTTTCCTCCCTCAGTTA------TCTCCATATATGTCTTCCTCTGACCACACCTAACTCACCTCCATGTGCCTCACAGAG------GCCC---CCTGCGTTCTGCTGCATTGCTTTTGCGCACACCCTTGATGATGAAGATGGTCCCAGTGATGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACATTCTCTGTAGTCTCTGGGAGAGGGCTTGGAGCATCAAACTCTG-GGGGGAAATAAGGTAGAGTACAT------GGTAATGAGT-GTGGCAAGAAGTAACAC------TCAGAATCAAATGTAGGGTACTT------AATAAAGAGAAAAGTTATTCATAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139297063 447 - 172585720 AGATCCTGAAGCTTTGGGATACCAGATGATACCAGTGTCTGATTC-GTTCTAGCAAAGAGAAATCAATAGCCACATCTGTTCCT-GCC-TTGTCTCTTAAATGCTTTACAT---------TTCCTT-TCC-CCACC----CTGTTTTCCTCCCTCAGATA------CCTCCATATATGTCTTCCTCTGGCCACACCTAACCCACCTGCATATGTCTCACAGAG------GCCC---CCTGCGTTCTGCAGCATTGCTTTTGCGCACACCCTTGATGATGAAGACGGTCCCAACGATGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACGTTCTCTGTAGTCTCTGGGAGAGGGCTTGGTGCATCAAACTCTG-GGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAATGTAGGGTACTT------AATAAAGAGAAAAGTTATTCATAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138457379 447 + 170955103 AGATCCTGAAGCTTTGGGATACCAGATGATACCAGTGTCTGATTC-GTTCTAGCAAAGAGAAATCAATAGCCACATCCGTTCCT-GCC-TTGTCTCTTAAATGCATTACAT---------TTCCTT-TCC-CCACC----CGGTTTTCCTCCCTCAGATA------CCTCCATATATGTCTTCCTCTGGCCACACCTAACCCACCTGCATATGTCTCACAGAG------GCCC---CCTGCGTTCTGCAGCATTGCTTTTGCGCACACCCTTGATGATGAAGACGGTCCCAACGATGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACGTTCTCTGTAGTCTCTGGGAGAGGGCTTGGTGCATCAAACTCTG-GGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAATGTAGGGTACTT------AATAAAGAGAAGAGTTATTCATAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      173591 447 +    407600 AGATCCTGAAGCTTTGGGATACCAGATGATACCAGTGTCTGATTC-GTTCTAGCAAAGAGAAATCAATAGCCACATCTGTTCCT-GCC-TTGTCTCTTAAATGCATTACAT---------TTCCTT-TCC-CCACC----CTGTTTTCCTCCCTCAGATA------CCTCCATATATGTCTTCCTCTGGCCACACCTAACCCACCTGCATATGTCTCACAGAG------GCCC---CCTGCGTTCTGCAGCATTGCTTTTGCGCACACCCTTGATGATGAAGACGGTCCCAACGATGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACGTTCTCTGTAGTCTCTGGGAGAGGGCTTGGTGCATCAAACTCTG-GGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAATGTAGGGTACTT------AATAAAGAGAAGAGTTATTCATAGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       46068 447 +    463628 AGATCCTGAAGCTTTGGGATACCAGATGATACCAGTGTCTGATTT-GTTCTAGCAAAGAGAAATCAATAGCCACATCTGTTCCT-ACC-TTGTCTCTTAAATGCATTACAT---------TTCCGT-TCC-CCACC----CTGTTTTCCTCCCTCAGATA------CCTCCATATATGTCTTCCTCTGGCCACACCTAACCCACCTGCATATGTCTCACAGAG------GCCC---CCTGCGTTCTGCAGCATTGCTTTTGCGCACACCCTTGATGATGAAGACGGTCCCAATGATGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACATTCTCTGTAGTCTCTGGGAGAGGGCTTTGTGCATCAAACTCTG-GGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAATGTAGGGTACTT------AATAAAGAGAAAAGTTATTCGTAGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39624217 447 +  71996105 AGATCCTGAAGCTTTGGGATACCAGATGATACCAGTGTCTGATTC-ATTCTAGCAAAGAGAAATCAAGAGCCACATCTGTTCCT-ACC-TTGTCTCTTAAATGCATTACAT---------TTCCTT-TCC-CCAGC----CTGTTTTCCTCCCTCAGATA------CCTCCATATATGTCTTCCTCTGGCCACACCTAACCCACCTGCATATGTCTCACAGAG------GACC---CCTGCGTTCTGCAGCATTGCTTTTGCGCACACCCTTGATGATGAAGACGGTCCCAACAATGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACGTTCTCTGTAGTCTCTGGAAGAGGGCTTGGTGCATCAAACTCTG-GGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAATGTAGGATACTT------AATAAAGAGAAAAGTTATTCATAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       44390 447 -    115496 AGATCCTGAAGCTTTGGGATACCAGATGATACCAGTGTCTGATTC-GTTCTAGCAAAGAGAAATCAATAGCCACATCTGTTCCT-ACC-TTGTCTCTTAAATGCATTACAT---------TTCCTT-TCC-CCACC----CTGTTTTCCTCCCTCAGATA------CCTCCATATATGTCTTCCTCTGGCCACACCTAACCCACCTGCATATGTCTCACAGAG------GCCC---CCTGCGCTCTGCAGCATTGCTTTTGCGCACACCCTTGATGATGAAGACGGTCCCAACGATGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACGTTCTCTGTAGTCTCTGGGAGAGGGCTTTGTGCATCAAACTCTG-GGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAATGTAAGGTACTT------AATAAAGAGAAAAGTTATTCGTAGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      674787 447 -   1936607 AGATCCTGAAGCTTTGGGATACCAGATGATAACAGTGTCTGATTC-GTTCTAGCAAAGAGAAATCAAGAGCCACATCTGTTCAT-ACC-TTGTCTCTTAAATGCATTACAT---------TTCCTT-TCC-CCACC----CTGTTTTCCTCCCTCAGATA------CCTCCATACATGTCTTCCTCTGGCCACACCTAACCCACCTGCATATGTCTCACAGAG------GCCC---CCTGCGTTCTGCAGCATTGCTTTTGCGCACACCCTTGATGATGAAGACGGTCCCAACAATGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACGTTCTCTTTAGTCTCTGGGAGAGGGCTTGGTGCATCAAACTCTG-GGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGAAGTAACAC------TCAGAATCAAATGTAGGGTACTT------AATAAAGAGAAAAGTTATTCATAGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138615499 448 - 171630274 AGACGCTGAAGCTTTGGGATACCAGATGATACCAATGTCTGATTC-GTTCTAGCAAAGCGAATTCAAGAGCCACATCTGTTCCT-ATC-TTGTCTCTCAAATGCATTACAT---------TTTATT-TCC-CCATC----CTGTTTTCCTCCCTCAGATA------CCTCCATGTACGTCTTCCTCCAACCACACCTAACTCACCTTCCTGCCCCTCACAGAG------GCCC---CCTGCGTTCTGTAGCATTGCTTTTGCGCACACCCTTGATGATGAAGATGGTCCCAACGATGATGCCTACCAGACCCACAATCAGGCCCAGGGCACACACCACATTCTCTGTAGTCTCTGGGAGAGGGCTTGGTGCATCATACTCTGTGAGGAAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGGTGTAACAC------TCAGAACCAAAGGTAAGATACTT------AATAAAGAGAATAGTTATTCATAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            173164 444 +   1154217 AGACCCTGAAGCTTTGGGATACCACATGATACCAATGTCTGATTC-GTTCTAGCAAAGTGAAATCAAGAGCCACATCTGTTCCT-ATC-TTGTCTCTCAAATGCATTGCAT---------TTTCTT-TCC-CCATC----CTGTTTTCCTCCCTCAGATA------CCTCCACGTATGTCTTCCTCTGACCACACGTAACCCACCTTCATGCACCTCACAGAG------GCCC---CCTGCGATCTGTAGCATTGCTTTTGCGCACACCCTTGATGATGAAGATGGTCCCAACGACGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACATTCTCTGTAGTCTCTGGGAGAGGGCTTGGTGCATCATACTCTGTGGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGGTGTAA----------CAGAACCAAAGGTAAGATACTG------AATAAAGAGAATAATTATTCATAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14000088 448 +  15232693 AGACCCTGAAGCTTTGGGATACCAGATGATACTAATGTCTGATTT-GTTCTAGCAAAGAGAAATCAAGAGCCACATCTGTTCCT-ATC-TTGTCTCTCAAATGCATTACAT---------TTTCTT-TCC-CCATC----CTGTTCTCCTCCCTCAGATA------CCTCCATGTATGTCTTCTTCCGACCACACGTAACCTACCTTCATGCGCCTCACAGAG------GCCC---CCTGCGTTCTGTAGCATTGCTTTTGCGCACACCCTTGATGATGAAGATGGTCCCAACAATGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACATTCTCTGTAGTCTCTGGAAGAGGGCTTGGTGCATCATACTCTGTGGGAGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGGTGTAACAC------TCAGAACCAAAGGTAAGACACTT------AATAAAGAGAATAATTATTCATAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      242420 448 +    446445 AGACCCTGAAGCTCTGGGATACCAGATGATACCAATGTCTGATTT-GTTCTAGCAAAGAGAAATCAAGAGCCACATCTGTTCCT-ATC-TTGTCTGTCAAATGCATTACAT---------TTTCTT-TCC-CCATC----CTGTTTTCCTCCCTCAGATC------TCTCCACGTATGTCCTCCTCTGACCACACCTAACCCACCTTCATATACCTCACAGAG------GCCC---CCTGCGTTCTGTAGCATTGCTTTTGCGCACACCCTTGATGATGAAGATGGTCCCAACGATGATGCCCACCAGACCCACAATCAGGCCCAGGGCACACACCACATTCTCTGTAGTCTCTGGGAGAGGGCTTGGTGCATCATACTCTGTGGGGGAAATAAGGCAGAGTACAT------GGTAATGAGT-GTGGGAAGGTGTAACAC------TCAGAACCAAAGGTAAGATACTT------AATAAAGAGAATAGTTATTCACAGA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4431124 441 + 123392446 AGACCCTGAAGCTTTGGGATGCCAGATGATGCCATTGTCTGATTG-GTTTTAACAATGAGAAGTCAAGAGCCTCATCTGTTCCT-GCC-------CTTAAAGGCATCACAAGTCc-----tcctct-cct-ccccccactctgctctcctcCCGCAGACA------CCTCCATCTA-GTCTCCCTCTGACCACACCTGACCCACCTCGGCGTG-CTCACAGAG------GGCC---GCGGCGCTCTGTGGCGTTGCCTTTGCGCACGCCCTTGACGATGAGGACGGTGCCAGCGACGATGCCCACCAGGCCCACGACCAGGCCCAGGGCACACACCACATTCTCCGTGGTCTCTGGGAGCGGCGTTGGCACGTCAAACTCTG-GGG-GAAATAAGACAGAGTACGT------GGCAATGAGT-GA-GTAGGGAGTAGTAC------TTAGGGCCAAATGTGGGGTACTT------AGTCAAGAGAA----TGTTAATAGA
i micMur3.chr6             I 135 C 0
s proCoq1.NW_012150019v1       77256 455 +   1371726 AGACCCTGAAGCTTTGGGATACCAGATGATGCCA-TGTCTGATTC-GTTCTAACAAACAGAAATCAAGAGCCTCGTCTGTTCCT-ACC-CTTTCTCTTAAAGGCATCACATGTCCTTCCTTCCTTT-TCC-CCACCCACTCTGTTTTCCTCCCTCAGATA------CCTCCAGATACGTCTTCCTCTGACCACACCTAACCCACCTCCACGTGCCTCACAGAG------GGCC---CCGGCGTTCTGTGGCATTGCCTTTGCGCACGCCCTTGATGATAAAGATGGTGCCAGCAATGATGCCCACCAGACCCACAACCAGGCCGAGGGCGCACACCACATTCTCTGTAGTCTCTGGGAGCGGGGTTGGCACATCAAACTCTG-GGGAAAAATAAGACAGAGTACAT------GGTAATGAAT-GAGGTAGGGAGTAATAC------TTGGGGCAAAATGTGGGGTACTT------AGTCAAGAGAA----TGTTAATAGA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15311054 458 -  18854210 AGACACTGAAGCTTTGGGACACCAGAAGATGCCA-ATTCTGATTC-GATCTAACAAGGAGAATTCAAGAGCCTCATCTGTTCCT-ACC-CTTTCTCTTAAAAGCATCACATGTCATTCTCTCCCTT-TCC-CCACCTACTCTGTTTTCCTCCCTCAGGCT------CC-CCGTATATGTCTTCCTCCACCCACACCTAACCTGCCTCCACGTGCCTCACAGAGGGCCCTGGCC---CCGGCGTTCTGCAGCGTTGCTTTTGCGCACGCCCTTGATGATGAAGACGGTGCCAGCAATGATGCCCACCAGACCCACAACCAGGCCCAGGGCACACACCACATTCTCTGTAGTCTCCGGGAGTGGAGTTCGTGCATCAAACTCTA-GAGAAAAATGAGAGAGTGTACAT------GGTAATGAAT-GAGGTTGGGAATAACAT------GTAGGGCAAAATGTGGGGTACTT------TGTCAAAAGAA----TAGT--TAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34342757 445 +  94987271 AGATCCTGAAGGTTTGGAA-AGCATCTGAACTCAAAGCTCAACTT--TTCCAACAAA-AGGAATTAAGAGACACCACTACCCCT-ACC-CT-TCTCTTAAAGGCACCACAC---------T--------------C----GTGCTTTCCTCCCTCAGACA------TTCACACATCTGTCAGTCTCTGAGCACATTTAACGCACCTCCAGGTATCTCACAGGG------CTCCTTGTCGGCGTTCTACAACATTGCGTTTTTTAATACCCTTCATGATGAGGATAATCCCCACAACGATGCCCACCAGACCCACAAACAACCCAAGAGCACACACGACATTCTCTTTAGTTTCTGGGAGGAGGGTTTTCTCTTCAAACTCT--GGGGAAAATAAAGCAGAGGAGAT------GTCAGTTGAT-GTTGTAGGAAATAACATGGGTAGCCAATATAAGAAAGAGAGTGTGTCCTgggactggagggacaactcattcgttaa
i mm10.chr17               C 0 I 182
s canFam3.chr12             70361208 455 -  72498081 GGGTCTTAAAGTTTTGGGATACCAGATGGTGTCAATGTCTGATTCTGTTCTCGCAAAGATAAATTAAGAGTCATGACT-TTCCT-ATCATTTTCCTTTAAAGATATCACAT---------ATCCTTCTCC-CCACT----CTGTTTCCTTCTTTTGGATAATTCTTTCTATATATATGCCTTCCTCT----ACATCAAACCCACCTGAAAGTGCCTCAAAGAG------GCCC---TCGGCGTTCACCAGCTTTGACCTTGCGCATGCCCTTGATGATGAAAATGGTCCCAGTAATGATGCCCACCAGACCCACGATCAGGCCCAGGGCACACACCACATTCTCTGTTGTCTCTGGGAGGGGGGTTGGTGGTTCAAACTCT--GGGGAAAATAAAACAGAGTACAGTACAGAGGTAATGACT-GT-GTATGGCGTAGCAA------TTAGAATCAAAGGTAGGGTATTC------AGTCAAAAAAATAATTATCAATCAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            465071 442 +    935526 GGACCCTGAAGCTTTGGGATGCCAGATGAGGCCAATGTCTGGTACTGAGGTAGGAAAGAGAGATC--GAGTCACAACTTTGCCCAAAC-TTTTCCCCTAAAAGAACCACAT---------GTCCTT-TCCTCCACC----ATGTTTCCTCCCTTGAAAAA---------CCATACACGTCTTCCCAAGACCACACCTAACCCACCTCCAGGCGTCTCACAGAG------GTCC---CCGGCGCTCAGCAGCATTGCCTTTGCGCATCCCCTTGATGATGAGGGTGGTGCCGACCACGATGCCCACCAGACCCACAACCAGGCCCAGGGCACACACCACATTCTCTGTGGTCTCTGGAAGGGGGGTTGGTCCTTCAAACTCTG-AGAAGAAATTTAAAAAAGGAAAG-----AAGTCATGAACGGTGGTGAAGAGGAGCAT------TTAGGATCAAACGTAA-----TT------AGGAAAGAGAAGTGTCATTAATAGA
i dasNov3.JH569424         C 0 C 0

a score=663923.000000
s hg38.chr6_KI270758v1_alt     11078 44 +     76752 TTAAAGAAGAGGAAGACAGAATGATGTATTGAGAGAATTACAGA
s panTro5.chr6             142710842 44 - 175400573 TTAAAGAAGAGGAAGACAGAATGATGTACTGAGAGAACTAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140862446 44 - 173848474 TTAAAGAAGAGGAAGACAGAGTGATGTATTGAGAGAATTACAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2380198 44 +   2807050 ttaaagaagaggaagacagaatgatgtattgagagaattacaga
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45673127 44 - 122973662 TTAAAGAAGAGGAAGACAGAATGATGTATTGAGAGAATTACAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139297510 44 - 172585720 TTAAAGAAGAGGAAGACAGAATGATGTGTTGAGAGAATTACAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138457826 44 + 170955103 TTAAAGAAGAGGAAGACAGAATGATGTGTTGAGAGAATTACAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      174038 44 +    407600 TTAAAGAAGAGGAAGACAGAATGATGTGTTGAGAGAATTACAGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       46515 44 +    463628 TTAAAGAAGAGGACGACAGAATGATGTGTTGAGAGAATTACAGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39624664 44 +  71996105 TTAAAGAAGAGAAGGACAGAATGATGTGTTGAGAGAATTACAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       44837 44 -    115496 TTAAAGAAGAGGACGACAGAATGATGTGTTGAGAGAATTACAGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      675234 44 -   1936607 TTAAAGAAGAGGAAGACAGAATGATGTGTTGAGAGAATTACAGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138615947 44 - 171630274 TTAGAGAGGACGAAGACAGAATGATGTATTGAGGGAACTGCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            173608 44 +   1154217 TCAGAGAAGACAAAGACAGAATGATGTATTGAGGGAATTGCAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14000536 44 +  15232693 TCAGAGAAGACAAAGACAGAATGATGTATTGAGGGAATTGCAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      242868 44 +    446445 TTAGAGAAGACAAAGACAGAATGATGTATTGAGGGAATTGCAGA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4431565 44 + 123392446 TTAAAGCAGAGGAAGACAGAGTGATGTATTGAAGGAATTGCAGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       77711 44 +   1371726 TTAAAGAAGAGGAAGACAGAGTGATGTATTGAAGGAATTGCAGA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15311512 44 -  18854210 TTAAAGAGGAGGAAGACAGAGCAATGTACTGAGAAAATTGCAGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70361663 43 -  72498081 TTAAATAAGAGGAAGACAGAATGATGTA-TGAAGGAAATGCATA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            465513 25 +    935526 TTAAAGAAGAGGAAG-------------------GAATTGCAGA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34343202 182 +  94987271 I

a score=966358.000000
s hg38.chr6_KI270758v1_alt     11122 70 +     76752 TT-AAAAAAAGGAGGAAGCTGGATAGTAGGAGA----AGAC-AGTTATATTAATTGTAGCAGATATTATGAAACAG
s panTro5.chr6             142710886 70 - 175400573 TT-AAAAAGAGGAGGAAGCTGGGTAATAGGAGA----AGAC-AGTTATATTAATTGTAGCAGATATTATGAAACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140862490 70 - 173848474 TT-AAAAAGAGGAGGAAGCTGGATAGTAGGAGA----AGAC-AGTTATATTAATTGTAGCAGATATTATGAAACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2380242 70 +   2807050 tt-aaaAAAAGGAGGAAGCTGGCTAGTAGGAGA----AGAC-AGTTATATTAATTGTAGCAGATATTATGAAACAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45673171 67 - 122973662 TT-AAAAAGAGGAGGAAGCTGGGTAGT---AGA----AGAC-AGTTGTATTAATTGTAGCAGGTATTATGAAACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139297554 70 - 172585720 TT-AAAAAGAGGAGGAAGCTGGGTAGTAGGAGA----AGAC-AGTTATATTAATTGTAGCAGGTATTATGAAACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138457870 70 + 170955103 TT-AAAAAGAGGAGGAAGCTGGGTAGTAGGAGA----AGAC-AGTTATATTAATTGTAGCAGGTATTATGAAACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      174082 70 +    407600 TT-AAAAAGAGGAGGAAGCTGGGTAGTAGGAGA----AGAC-AGTTATATTAATTGTAGCAGGTATTATGAAACAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       46559 67 +    463628 TT-AAAAAGAGGAGGAAGCTGGGTAGT---AGA----AGAC-AATTATATTAATTGTAGCAGGTATTATGAAACAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39624708 70 +  71996105 TT-AAAAAGAGGAGAGAGCTGGGTAGTAGGAGA----AGAC-AGTTATATTAATTGTAGCAGGTATTACGAAACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       44881 70 -    115496 TT-AAAAAGAGGAGGAAGCTGGGTAGTAGGAGA----AGAC-AGTTATATTAATTGTAGCAGGTATTATGAAACAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      675278 70 -   1936607 TT-AAAAAGAGGAGGAAGCTGGGTAGTAGGAGA----AGAC-AGTTATATTAATTATAGCAGGTATTATGAAACAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138615991 69 - 171630274 TTAAAAAAGTGAAGAAAGCTGGGTAATAGGAGA----AGAC-AGATACATTAATTGTAGCAGATATTATGAAAC--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            173652 70 +   1154217 TT-AAAAAGTGGAGGAAGCTGGGTAATAGGAGA----AGAC-AGGTATATTGATTATAGCAGATATTATGAAACAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14000580 70 +  15232693 AT-AAAAAGTGGAGGAAGCTGGGTAATAGGAAA----AGAC-AGGTATATTAATTGTAGCAGATATTATGAAACAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      242912 68 +    446445 TT-AAAAAGTGGAGGAAGCTGGGTAATAGGAGA----AGAC-ACATATATTAATTGTAGCAGATATTATGAAAC--
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4431609 74 + 123392446 TT-AAAGAGTGGAAGAAGCTGAGTAGTGGGGGAAGGCAGGC-AGGTATATGAGTTGTGGTGGATGTTATGAAACAG
i micMur3.chr6             C 0 I 26
s proCoq1.NW_012150019v1       77755 70 +   1371726 TT-AAAAAGTGGAGGAAGCGGAGTAATGGGAGA----AGGC-AGGTATGTGAGTTGCAGCGGATGTTGTCAAACAG
i proCoq1.NW_012150019v1   C 0 I 26
s otoGar3.GL873550          15311556 70 -  18854210 TT-AAAAAATGGAGTAAGATGACTAGCGGGATA----AGGC-AGATAAATGAGTGGTAACAGATGTTATGAATCCG
i otoGar3.GL873550         C 0 I 6
s mm10.chr17                34343384 70 +  94987271 TT-CAAAAATGAATGAATGTGCCTTACAAGATA----ACCA-AGGTGTATATATTGTAGTCAATGTTACGAAACAC
i mm10.chr17               I 182 C 0
s canFam3.chr12             70361706 71 -  72498081 TT-AAAAGGTGGGTGAAACTGAATAATGGGAGA----AGACAAGGAATAGGAGTCATAGCAATTGTTATGGATGAG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            465538 69 +    935526 -T-TAAAATAGTGAGAAGTTGAGTATTGAGAAG----AGAC-AAGGTTTAGGACTGTAGCAGATGTCACGAAACTG
i dasNov3.JH569424         C 0 C 0

a score=131705.000000
s hg38.chr6_KI270758v1_alt     11192 18 +     76752 TTAGAA-----CACCGAGTTT------------------------------CA
s panTro5.chr6             142710956 18 - 175400573 TTAGAA-----CACCGAGTTT------------------------------CA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140862560 18 - 173848474 TTAGAA-----CACCGAGTTT------------------------------CA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2380312 18 +   2807050 TTAGAA-----CACCGAGTTT------------------------------CA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45673238 18 - 122973662 TTAGAA-----CACCGAGTTT------------------------------CA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139297624 18 - 172585720 TTAGAA-----CACCGAGTTT------------------------------CA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138457940 18 + 170955103 TTAGAA-----CACCGAGTTT------------------------------CA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      174152 18 +    407600 TTAGAA-----CACTGAGTTC------------------------------CA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       46626 18 +    463628 TTAGAA-----CACCGAGTTT------------------------------CA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39624778 18 +  71996105 TTAGAA-----CACCGAGTTT------------------------------CA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       44951 18 -    115496 TTAGAA-----CACCGAGTTT------------------------------CA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      675348 18 -   1936607 TTAGAA-----TACCAAGTTT------------------------------CA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138616060 16 - 171630274 --AGGA-----CACTGAGTTC------------------------------TA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            173722 18 +   1154217 TTAGGA-----CACTGAGTTC------------------------------TA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14000650 18 +  15232693 TTAGGA-----CACTGAGTTC------------------------------TA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      242980 16 +    446445 --AGGA-----CACTGAGTTC------------------------------TA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15311632 18 -  18854210 CTGGGT-----CCCAAAGGTC------------------------------CA
i otoGar3.GL873550         I 6 I 2
s mm10.chr17                34343454 48 +  94987271 TGTGAA-----CTCTTAGTTTGTGATGCTGGTAATTGAGCTTGAAGCCCCACA
i mm10.chr17               C 0 I 4
s canFam3.chr12             70361777 23 -  72498081 TTAGGGAACATCCCAAAGCAC------------------------------CA
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            465607  5 +    935526 --------------TGAGT----------------------------------
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4431683 26 + 123392446 I
e proCoq1.NW_012150019v1       77825 26 +   1371726 I

a score=7783935.000000
s hg38.chr6_KI270758v1_alt     11210 458 +     76752 CACAAGCATCAT---------------------------------------------------AGGAGGAAACCTTGAAATAA---AGGAGATTG--AGTGT---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCTCATCCAAGCCCCAGTGCTCCACCCTGCAGTCGTAAACGTCCTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTCGAAGCCACGTGACATTGACCACTGGTGGGGTGAACTTGTCTATGAAACAGATGAGGACGTTGGGCTCTCTCAGTTCCACAGGGCTGTTTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATCACTGCTTAGGCTCACCCCTCTCCCTCCCATGCTCAATTGTGGTACAAACGTATCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
s panTro5.chr6             142710974 458 - 175400573 CACAAGCATCAT---------------------------------------------------AGGAGGAAACCTTGAAATAA---AGGAGATTG--AGTGA---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCTCATCCAAGCCCCAGTGTTCCACCCTGCAGTCATAAACGTCCTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTCGAAGCCACGTGACATTGACCACTGGTGGGGTGAACTTGTCGATGAAACAGATGAGGATGTTGGGCTCTCTCAGTTCCACAGGGCTGTTTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATCACTGCTTAGGCTCACCCCTTTCCCTCCCATGCTCAATTGTGGTACAAACCTATCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140862578 458 - 173848474 CACAAGCATCAT---------------------------------------------------AGGAGGAAACCTTGAAATAA---AGGAGATTG--AGTGA---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCTCATCCAAGCCCCAGTGTTCCACCCTGCAGTCGTAAACGTCCTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTCGAAGCCACGTGACATTGACCACTGGTGGGGTGAACTTGTCGATGAAACAGATGAGGATGTTGGGCTCTCTCAGTTCCACAGGGCTGTTTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATCACTGCTTAGGCTCACCCCTTTCCCTCCCATGCTCAATTGTGGTACAAACCTATCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2380330 458 +   2807050 CACAAGCATCAT---------------------------------------------------AGGAGGAAACCTTGAAATAA---AGGAGATTG--AGTGT---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCTCATCCAAGCCCCAGTGCTCCACCCTGCAGTCGTAAACGTCCTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAATTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTCGAAGCCACGTGACATTGACCACTGGTGGGGTGAACTTGTCTATGAAACAGATGAGGACGTTGGGCTCTCTCAGTTCCACAGGGCTGTTCGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGTCATCACTGCTTAGGCTCACCCCTCTCCCTCCCATGCTCAATTGTGGTACAAACCTATCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45673256 458 - 122973662 CACAAGCATCAT---------------------------------------------------AGGAGGAAACCTTGAAATAA---AGGAGATTG--AGTGA---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCTCATCCAAGCCCCAGTGCTCCACCTTGCAGTCGTAAACGTCCTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTCGAAGCCACGTGACATTGACCACTGGTGGGGTGAACTTGTCGATGAAACAGATGAGGACATTGGGCTCTCTTAGTTCCACAGGGCTGTCTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATCACTGCTTAGGCTCACCCCTCTCCCTCCCATGCTCAATTGTGGTACAAACCTATCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139297642 458 - 172585720 CACAAGcatcat---------------------------------------------------aggaggaaactttgaaataa---aggagattg--agtga---------tggtccataccccagtgcttgagaagaggtgcatccaagccccagtgctccaccttgcagtcataaatGTCCTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTTTAAGCCATGTAACTTTGACCACTGGTGGAGAGAACTTGTCGATGAAACAGATGAGGACGTTGGGCTCTCCCAGTTCCACAGGGCTGTTTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATAACTGCTTAGGCTCACCCCTCTCCCTCCAATGCTGAATTGTGTTATAAACCTGTCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138457958 458 + 170955103 CACAAGCATCAT---------------------------------------------------AGGAGGAAACTTTGAAATAA---AGGAGATTG--AGTGA---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCGCATCCAAGCCCCAGTGCTCCACCTTGCAGTCATAAATGTCTTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTTTAAGCCATGTAACTTTGACCACTGGTGGAGAGAACTTGTCGATGAAACAGATGAGGACGTTGGGCTCTCCCAGTTCCACAGGGCTGTTTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATTACTGCTTAGGCTCACCCCTCTCCCTCCCATGCTGAATTGTGTTATAAACCTGTCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      174170 458 +    407600 CACAAGcatcat---------------------------------------------------aggaggaaactttgaaataa---aggagattg--agtga---------tggtccataccccagtgcttgagaagaggcgcatccaagccccagtgctccaccttgcagtcataaatGTCTTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTTTAAGCCATGTAACTTTGACCACTGGTGGAGAGAACTTGTCGATGAAACAGATGAGGACGTTGGGCTCTCCCAGTTCCACAGGGCTGTTTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATAACTGCTTAGGCTCACCCCTCTCCCTCCCATGCTGAATTGTGTTATAAACCTGTCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       46644 458 +    463628 CACAAGcatcat---------------------------------------------------aggaggaaactttgaaataa---aggagattg--agtga---------tggtccataccccagtgcttgagaagaggcgcatccaagccccagtgctccaccttgcagtcataaatGTCTTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACCGGTTTTCCATTTTGAAGCCATGTAACTTTGACCACTGGTGGAGAGAACTTGTCGATGAAACAGATGAGGACGTTGGGCTCTCCCAGTTCCACAGGGCTGTTTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATCACTGCTTAGGCTCACCCCTCTCCCTCCCATGCTGAATTGTGTTATAAACCTGTCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39624796 458 +  71996105 CACAAGCATCAT---------------------------------------------------AGGAGGAAACTTTGAAATAA---AAGAGATTG--AGTGA---------TAGTCCATACCCCAGTGCTTGAGAAGAGGTGCATCCAAGCCCCAGTGCTCCACCTTGCAGTCATAAAAGTCTTCAGTTGAGGGCACGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTTGAAGCCATGTAACTTTGACCACTGGTGGAGAGAACTTGTCGATGAAACAGATGAGGACGTTGGGCTCTCCCAGTTCCACAGGGCTGTTTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATCACTGCTTAGGCTCACCCCTCTCCCTCCCATGCTGAATTGTGTTATAAACCTGTCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       44969 458 -    115496 CACAAGCGTCAT---------------------------------------------------AGGAGGAAACTTtgaaataa---aggagattg--agtga---------tggtccataccccagtgcttgagaagaggcgcatccaagccccagtgctccaccttgcagtcataaatGTCCTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTCTGAAGCCATGTAACTTTGACCACTGGTGGAGAGAACTTGTCGATGAAACAGATGAGGACGTTGGGCTCTCCCAGTTCCACAGGGCTGTTTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATCACTGCTTAGGCTCACCCCTCTCCCTCCCATGCTGAATTGTGTTATAAACCTGTCTAAAAACCCTAAAGCT--------------GAAAAAGTAGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      675366 458 -   1936607 CACAAGCATCAT---------------------------------------------------AGGAGGAAACCTtgaaataa---aggagattg--agtga---------tggtccataccccagtgcttgagaagaggtgcatccaagccccagtgctccaccttgcagtcataaatGTCTTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTTGAAGCCATGTAACCTTGACCACTGGTGGAGAGAACTTGTCGATGAAACAGATGAGGACATTGGGCTCTCCCAGTTCCACAGGGCTGTTTGTGAGCACAGTTACCTCTGGAGGTACT-GGGGGACACATGACAGACATGACAGAAATCAGCCATCACTGCTTAGGCTCACCCCTCTCCCTCCCATGCTGAATTGTGTTATAAACCTGTCTAAAAACCCTGAAGCT--------------GAAAAAGTAGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138616076 449 - 171630274 CACAAACATCAT---------------------------------------------------AGGAGAAAACCTTGAAATAA---AGGAGATTG--AGTGA---------CGGTCCCTACCCCAGTGCTTGAGAAGAGGCTCATCCAAGCCCAAGTGCTCCACCTTGCAGTCATAAATGTCCTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGATGGTCTTCCCTGGGTAGGAAGACTGTCTCTGACACTCCTGTAGTGACAGGTTTTCCATTTTGAAGCCATGTGACATTGACCACTGGTGGGGTGAATTTGTCGATGAAACAGATGAGGACGTTGGGCTCTCCCAGTTCCACAGGGCTGTCTGTGAGCACAGTTACCTCTGGAGGAACT-GAAGGAC---------ACAGGACAGAAATCAGCTAACACTGCTTAGGCTCAGTCCTCTCCCTCCCATGCTGAATTATGGTACAAACCTATCTAAAAACCCCAAAGCT--------------GAAGAAGTCGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            173740 448 +   1154217 CACAAACATCAT---------------------------------------------------AGGAGAAAATGTTGAAATAA---AGGAGATCG--AGTGA---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCTCATCCAAGCCCCAGTGTTCCACCTTGCAGTCGTAAATGTCCTCAGTTGAGGGCAGAAAAGGGAGATAGTAGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTAGTGACAGGTTTTCCATTTTGAAGCCACGTGACTTTGACCGCTGGTGGGGTGAACTTGTCGACGAAACAGATGAGAATGTTGGGCTCTCCCAGTTCCACAGGGCTGTCTGTGAGCACAGTTACCTCTGGAGGAACT-GAAGGAC---------ACGTAACAGAAATCAGCCATCACTGCTTAGGCTCAGTCCTCTCCCTCCCATGCTGAATTATGGTCCAAACCTATCT-AAACCCCCAAAGCT--------------GAAGAAGTCAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14000668 449 +  15232693 CACAAACATCAT---------------------------------------------------AGGAGAAAACGTTGAAATAA---AGGAGATTG--AGTGA---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCTCATCCAAGCCCCAGTGCTCCACCTTGCAGTCATAAATGTCCTCAGTTGAGGGCAGAAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTAGTGACAGGTTTTCCATTTTGAAGCCATGTGACATTGACCACTGGTGGGGTGAACTTGTCGATGAAACAGATGAGGATGTTGGGCTCTCCCAGTTCCACAGGGCTGTCTGTGAGCACAGTTACCTCTGGAGGAACT-GAAGGAC---------ACATAACAGAAATCAGCCATCACTGCTTAGGCTTGGTCCTCTCCCTCCCATGCTGAATTATGGTACAGACCTATCTAAAAACCCCAAAGCT--------------GAAGAAGTCAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      242996 449 +    446445 CACAAACATCAT---------------------------------------------------AGGAGAAAACCTTGAAATAA---TGGAGATTG--AATGA---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCTCATCCAAGCCCCAGTGCTCCACCTTGCAGTCATAAATGTCCTCAGTTGAGGGCAGGAAGGGGAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTAGTGACAGGTTTTCCATTTCGAAGCCACGTGACATTGACCACTGGTGGGGTGAACTTGTCGATGAAACAGATGAGGATGTTGGGCTCTCCCAGTTCCACAGGGCTGTCTGTGAGCACAGTCACCTCTGGAGGAACT-GAAGGAC---------ACATGACTGAAATCAGCCATCACTGCTTAGGCTCAATCCTCTCCCTCCCATGCTGAATGATGGTACAAACCTATCTAAAAACCCCAAAGCT--------------GAAGAAGTCGT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4431709 446 + 123392446 CATAAGCATCAC---------------------------------------------------AGGAGGGAACCCGAAAATAA---AGTAGGCTG--AAGGG---------TGGTCCATACCCCAGTGCTTGATAAGAGGCTCATCCAAGCCCAAGTGCTCCACCTTGCAGTCGTAGAAGTCCTCGGTTGAGGGCAGGAAGGGCAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCGTTTTGAAGCCATGTCACCTTAACCACCGGTGGGGAGAACTTGTCGATGAAACAGATGAGGACGTTGGGCTCTCCCAGTTCCACGGGGGCGTTTGTGAGCACAGTCACCTCTGGGGGCACT-GGGGGAC---------ACAGGACAGAAGTTAGTCTTCGCTGCTTAGGCTTGCGCTCTCCCTCCC-ATACCGAACTGTGGGACAAACCTATGGAAAGACTCTAAAGCC----------------AAAAACGGT
i micMur3.chr6             I 26 C 0
s proCoq1.NW_012150019v1       77851 448 +   1371726 CACAAGCATCAC---------------------------------------------------AGGAGGAAACCTTAACATAA---AGTAGATTG--AAGGA---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCTCATCCAAGCCCAAGTGCTCCACTTTGCAGTCATAGAAGTCTTCAGTTGAGGGCAGGAAGGGCAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACTGTCTCTGACACTCCTGTGGTGACAGGTTTTCCATTTCGAAGCCATGTGGCCTTGACCACCGGTGGGGAGAACTTGTCAATGAAACAGATGAGGACGTTGGGCTCTCCCAGTTCCACAGGAGTGCTTGTGAGCACAGTTACCTCTGGAGGCACTGGGGGGAC---------ACAGGACAGAAATTAGTCTTCACCGCTTAGACCTGCGCCTCTCCCTCC-ACCCTGAATTGTGGTACAAACCTATTTAAAGACTCTAATGCC---------------AAAAAACAGT
i proCoq1.NW_012150019v1   I 26 C 0
s otoGar3.GL873550          15311652 439 -  18854210 CAC-AGCATCAC-----------------------------------------------------------------------------AGATTG--GAGGA---------TGGTCCATACCCCAGTGCTTGAGAAGAGGCTCATCCAAACCCCAGTGCTCCACTCTGCAGTCATAGACGTCCTCGGCCGAGGGCAAGAAGGGCAGATAGTGGAACTTGCGGAAAAGGTGGTCTTCCCTGGGCAGGAAGACAGTCTCTGACACCCCGGTGGTGACAGGTTTTCCATTTTGAAGCCATGTGACGTTGACCACCGGCGGGGAGAACTTGTCAATGAAACAGATGAGGACATTGGGCTCTCCCAGTTCCACTGGGCTGTTCGTGAGCACAGTTACCTCTGGAGGCACT-AGGGGAC---------ACATGACTGACGTTAGCCCTTGCTGCTTAGTCTCATGCCTCCCCCTCCTACACTGAATTGTGGTACACATCTATTTAAAGGCCATACTGCaaaaaaaaaaaaaaaaaaaaaGCATT
i otoGar3.GL873550         I 2 C 0
s mm10.chr17                34343506 491 +  94987271 TACGGCCATTACTCTAACAGTGAGCTGTGCTCCCATCCCTGTACTGTTAAATGCTACGTGTCCAGAATACAGCATTGAAGCAGTCTGGGAGCCTGCAAGTGAAGTCATGACTGCACCCTACCCCAGTGCTTCCGCAGAGGCTCCTCCAAACCCCAGTGATCCACCTCACAGTCATAGAAATCATCTGTGGAGGGCAGGAAGGTCAGAAAGTGGAATTTGCGGAAGAGGTGATCGTCCCTCGGGAGAAACACTGTCTCTGACACGCCTTCGGTGACAGGCCGTCCATTCCGGAGCCAGGTGACATTGACGACTGGAGGGGAGAACTTGTCAATGAAACAGATGAGGATGTTGGGCTCTCCCAGGTTCACAGGGCTTCTGGAGAGTACAGTCACCTCTGGGGCCACT-GTGGGAG---------ACATGGCATAAATTAGCTTTCATTCCTTCAGCTT----CTGCTCTGCCCATGCTGTCTTGTGGTACAATGCTA---------CCTAGGACT------------------------C
i mm10.chr17               I 4 C 0
s canFam3.chr12             70361802 415 -  72498081 CATATGCATCAC---------------------------------------------------CGGGGAAAATCATAAAAGAA---AGGAGATGG--AAGGA---------TGGTCCATACCCCAGTGCTTGAGAAGAGGTTCATCCAAACCCCAGTGCTCCACCTTGCAGTCATAAACGTCCTCGGCTGAGGGCAGGAAGGGGAGATAGTGGAATTTGCGGAAAAGGTGGTCTTCTCTGGGCAAAAAGATTGTCTCTGACACTCCTGTGGTGACAGGGTTTCCATTTCGAAGCCACGTGACATTGATCACTGGTGGGGAGAACTTGTCGATGAAACAGATGAGGATGTTGGGCTCTCCCAGTTCCACAGGGGTGTTTGAGAGCACAGTCACCTCTGGAGGTACT-G-AGGAC---------ACAGGACAGAAATTAGCCTTCCCTGCTTGGGCTAGTCCTTCTCCCTCCCA---------------------------------CTGAAACA--------------GAATAAGCAGT
i canFam3.chr12            I 2 C 0
s dasNov3.JH569424            465612 439 +    935526 CCTAAGCATCAC---------------------------------------------------GGGAGGACACCAAGAAATAA---AGGGGATTG--AAGGA---------TGGTCCGTACCCCAGTGTTTGAGGAGAGGCTCATCCAGACCCCAGTGCTCCACTTTGCAGTCATAGACATCCTCAGTTGAGGGCAGGAAGGGGAGATAATGGAACTTGCGGAAAAGGTGGTCATCCCTGGGTAGGAAGACTGTCTCTGACACTCCTGTAGTGACAGGTTTTCCATTTTGAAGCCATGTGACATTGATCACTGGTGGGGAGAACTTGTCAACGAAACAGATGAGAATGTTGGGCTGTCCCAGTTCCACAGGTCTGTTCAAGAGCACCGTCACCTCTGGAGGTACT-GGGGAGC---------ACAAGACAGAAATTAGCTTCCCTTGTTT-GGCTGGTCCCTTCCCCTCCCACATTGAATTATGTTCCAA---------TAGACCCTATAGTT--------------GGAAAAGTAGT
i dasNov3.JH569424         C 0 N 0

a score=1782715.000000
s hg38.chr6_KI270758v1_alt     11668 140 +     76752 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCTCAGATAACAATCTCTGACAGCACCCCCTCCCCAAGAAATTGAGCCAATATTGAGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATGAACTTAGG
s panTro5.chr6             142711432 140 - 175400573 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCTCAGATAACAATCTCTGACAGCACCCCCTCCCCAAGAAATTGAGCCAATATTGAGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATGAACTTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863036 140 - 173848474 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCTCAGATAACAATCTCTGACAGCACCCCCTCCCCAAGAAATTGAGCCAATATTGAGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATGAACTTAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2380788 140 +   2807050 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCTCAGATAACAATCTCTGACAGCACCCCCTCCCCAAGAAATTGAGCCAATATTGAGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATGAACTTAGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45673714 140 - 122973662 TGAAATTGTGCTCTGAGAAATC---TATGTCAC---ATCCTCAGATAACAATCTCTGACAGCACCCCCTCCCCAAGAAATTGAGCCAATATTGAGGCATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATGAACTTAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298100 137 - 172585720 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCCCAGAT---AATCTCTGACCACCCCTCCTCCCCAAGAAATTGAGCCAATATTGAGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGACT----CCCCCAGCATGAACTCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138458416 137 + 170955103 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCCCAGAT---AATCTCTGACCGCCCCTCCTCCCCAAGAAATTGAGCCAATATTGCGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATGAACTCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      174628 137 +    407600 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCTCAGAT---AATCTCTGACCACCCCTCCTCCCCAAGAAATTGAGCCAATATTGAGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGACT----CCCCCAGCATGAACTCAGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47102 137 +    463628 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCTCAGAT---AATCTCTGACCGCCCCTCCTCCCCAAGAAATTGAGCGAATATTGAGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATGAACTCAGG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39625254 137 +  71996105 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCTCAGAT---AATCTCTGACCGCCCCTCCTCCCCAAGAAATTGAGCCAATATTGAGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATGAACTCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       45427 137 -    115496 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCCCAGAT---AATCTCTGACTGCCCCTCCTCCCCAAGAAATTGAGCCAATATTGAGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATCAACTCAGG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      675824 137 -   1936607 TGAAATTGTGCCCTGAGAAATC---TATGTCAC---ATCCTCAGAT---AATCTCTGACCGCCCCTCCTCCCCAAGAAATTGAGCCAATATTGAGGTATAAGATATCCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATGAACTCAGG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138616525 136 - 171630274 TGAAATTGTGCCTTGAGAAGCC---TATGCCAC---ATCCTCAAATAAC-ATTTCTGACAGGCCCTCCT--CCAAGAAACTGAGGCAATATTGAGGTATAAAATATGCCAG--------------------GACT------------------------TCCC---TTCTGGCT-----CCCCAGCATGAACTCAGA
i calJac3.chr4             C 0 I 7
s saiBol1.JH378315            174188 138 +   1154217 TGAAATTGTGCCTTGAGAAGCC---TATGCCAT---ATCCTCAAATAACAATTTCTGACAGGCCCTCCT--CCAAGAAATTGAGGCAATATTGAGGTATAAGATATGCAAG--------------------GACT------------------------TCCC---TTCTGGTT----CCCCCAGCAAGAACTCAGA
i saiBol1.JH378315         C 0 I 7
s cebCap1.NW_016107339v1    14001117 138 +  15232693 TGAAATTGTGCCTTGAGAAGCC---TATGCCAC---ATCCTCAAATAACAATTTCTGACAGGCCCTCCT--CCAAGAAATTGAGGCAATATTGAGGTATAAGATATGCAAG--------------------GACT------------------------TCCC---TTCTGGCT----CCCCCAGCATGAACTCAGA
i cebCap1.NW_016107339v1   C 0 I 25
s aotNan1.NW_018508875v1      243445 137 +    446445 TGAAATTGTGCCTTAAGAAGCC---TATGCCAC---ATCCTCAAATAAC-ATTTCTGACAGGCCCTCCT--CCAAGAAATTGAGGCAATAGTGAGGTATAAGATATGCAAG--------------------GACT------------------------TGCC---TTCTGGCT----CCCCCAGCATGAACTCAGA
i aotNan1.NW_018508875v1   C 0 I 20
s micMur3.chr6               4432155 136 + 123392446 TGAAATTGTGCCCTGAAGAGTC---TGTGCCAC---ATTCCCAGAGACCTACCTCTGACACCCTTTC----CCCTGAACTGGAGCCAGTAGTGAAGTGTAAGATATCCAAG--------------------GACC------------------------TGAC---TCCTGGCC----CCCCCAGCACGGACTCGGC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       78299 111 +   1371726 TGAGATTGTGCCCTGAAAAGTC---TATGCCAC---ATTCTCAGAGGCCTATCTCTGATACCCTCTC----CCATGAACTGGAGCCAATATTG---------------------------------------------------------------------C---TCCTGGCT----CCCCCAGCATGGACTCAGC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15312091 135 -  18854210 TGACATTGTACCCTGAGAAGTC---TATGCCAC---ATTCTGAAAGACCAATCTCTGGCACCCTCTC----CTGTGAACTGGAGCCAACATTGGAGTAGAAGATATCTGAA--------------------GACC------------------------TCAC---TCCTGGCT-----CTCCAGCATGGACTGAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34343997 149 +  94987271 TGAAACGGCTCCCTGAGGAGTCAGTCATGTGACCCTAGTCCCAGAT--------CTGACATTT----------------TGGAGCCAGTATTGAGGTATGAGGTATCCAAC--------------------CACTCACGCGATTCCACCCAAGCCCCCATCCCAGTTTCTCACT----CCCACTGTATAGACTCAAG
i mm10.chr17               C 0 C 0
s canFam3.chr12             70362217 159 -  72498081 TGAAACTCTGCCCTGAGGA-TC---TGTACTAC---AGTCTCAGATACCTATCTCTGATA--CTCTCCT--CCATGAACTGGAACCAGTGCTGTGGTGTAAGATATACAGGATATTTTAGGCACTGGAGATAATT------------------------TCAT---TCCTGCCCACCCTCCCCAGCATAGATTTGGG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            275531 113 +    935526 TGAAATGGTGTTCTGCAGATTC---AATGTGAC---AGCATCA---------------------------CCCTGGGACTGGAAACAAGATGGAGATACAAGATATCCAGG--------------------GACC------------------------TCAT---TCTTGGGT----CTCCCAGCATGAATTCAGG
i dasNov3.JH569424         N 0 C 0

a score=110756.000000
s hg38.chr6_KI270758v1_alt     11808 21 +     76752 GCAATGA-CTTCGTAGGAGACC
s panTro5.chr6             142711572 21 - 175400573 GCAATGA-CTTCGTAGGAGACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863176 21 - 173848474 GCAATGA-CTTCGTAGGAGACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2380928 21 +   2807050 GCAATGA-CTTCATAGGAGACC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45673854 21 - 122973662 GCAATGA-CTTCATAGGAGACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298237 21 - 172585720 GCAATGA-CTTCGTAGGAGACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138458553 21 + 170955103 GCAATGA-CTTCGTAGGAGACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      174765 21 +    407600 GCAATGA-CTTCGTAGGAGACC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47239 21 +    463628 GCAATGA-CTTCGTAGGAGACC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39625391 20 +  71996105 GCAATGA-CTTTGTA-GAGACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       45564 21 -    115496 GCAATGA-CTTCGTAGGAGACC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      675961 21 -   1936607 GCAATGA-CTTCGTAGGAGACC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138616668  3 - 171630274 GTG-------------------
i calJac3.chr4             I 7 C 0
s saiBol1.JH378315            174333 13 +   1154217 GTGTTGA-CTCTGT--------
i saiBol1.JH378315         I 7 C 0
s micMur3.chr6               4432291 20 + 123392446 AAAATG--CCCTGTGAGTGACC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       78410 19 +   1371726 GAAATG---CCTGTGAGTGACC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15312226 19 -  18854210 GCAGTG---CCTGTGAGTGACC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34344146 21 +  94987271 TCAGTGC-TTTCATAAATGTTA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70362376 21 -  72498081 GCAATGG-CTCTATAAGTGACT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            275644 22 +    935526 GAAAGGATTTTTGTGAGTGAAT
i dasNov3.JH569424         C 0 C 0
e cebCap1.NW_016107339v1    14001255 25 +  15232693 I
e aotNan1.NW_018508875v1      243582 20 +    446445 I

a score=77186.000000
s hg38.chr6_KI270758v1_alt     11829 5 +     76752 ATGGA
s panTro5.chr6             142711593 5 - 175400573 ATGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863197 5 - 173848474 ATGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2380949 5 +   2807050 ATGGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45673875 5 - 122973662 ATGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298258 5 - 172585720 ATGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138458574 5 + 170955103 ATGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      174786 5 +    407600 ATGGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47260 5 +    463628 ATGGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39625411 5 +  71996105 ATGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       45585 5 -    115496 ATGGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      675982 5 -   1936607 ATGGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138616671 4 - 171630274 -TGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            174346 5 +   1154217 ATGGG
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      243602 5 +    446445 ATGGG
i aotNan1.NW_018508875v1   I 20 C 0
s micMur3.chr6               4432311 5 + 123392446 ATGGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       78429 5 +   1371726 ATGGA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15312245 5 -  18854210 ATGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34344167 5 +  94987271 ATTGA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70362397 5 -  72498081 GTGGA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            275666 5 +    935526 GTGCA
i dasNov3.JH569424         C 0 C 0
e cebCap1.NW_016107339v1    14001255 25 +  15232693 I

a score=1223460.000000
s hg38.chr6_KI270758v1_alt     11834  88 +     76752 TGACAGAGACAAGACT------------TGAGCACAACAAGATAGGATCAAACCCATA--AAGTTCTCAGACCTCTGGC-ATGAGAATTTGG---GGCTTGTTAAT
s panTro5.chr6             142711598  88 - 175400573 TGACAGAGACAAGACT------------TGAGCACAACAAGATAGGATCAAACCCACA--AAGTTCTCAGACCTCTGGC-ATGAGAATTTGG---GGCTTGTTAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863202  88 - 173848474 TGACAGAGACAAGACT------------TGAGCACAACAAGATAGGATCAAACCCATA--AAGTTCTCAGACCTCTGGC-ATGAGAATTTGG---GGCTTGTTAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2380954  88 +   2807050 TGACAGAGACAAGACT------------TGAGCACATCAAGATAGGATCAAACCCATA--AAGTTCTCAGACCTCTGGC-ATGAGAATTTGG---GGCTTGTTTAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45673880  88 - 122973662 TGACAGAGACAAGACT------------TGAGCACATCAAGATAGGATCAAACCCATA--AAGTTCTCAGACCTCTGGC-ATGAGAATTTGG---AGCTTGTTTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298263  89 - 172585720 TGACAGAGACAAGACT------------TGAGCACATCAAGATAGGAACAAACCCATA--AAGTTCTCAGACCTCTGGCTATGAGAATTTGG---GGCTTGTTGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138458579  89 + 170955103 TGACAGAGACAAGACT------------TGAGCACATCAAGATAGGAACAAACCCATA--AAGTTCTCAGACCTCTGGCTATGAGAATTTGG---GGCTTGTTGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      174791  89 +    407600 TGACAGAGACAAGACT------------TGAGCACATCAAGATAGGAACAAACCCATA--AAGTTCTCAGACCTCTGGCTATGAGAATTTGG---GGCTTGTTGAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47265  89 +    463628 TGACAGAGACAAGACT------------TGAGCACATCAAGATAGGAACAAACCCATA--AAGTTCTCAGACCTCTGGCTATGAGAATTTGG---GGCTTGTTGAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39625416  89 +  71996105 TGACAGAGACAAGACT------------TGAGCACATCAAGATAGGAACAAACCCATA--AAGTTCTCAGACCTCTGGCTATGAGAATTTGG---GGCTTGTTGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       45590  89 -    115496 TGACAGAGACAAGACT------------TGAGCACATCAAGATAGGAACAAACCCATA--AAGTTCTCAGACCTCTGGCTATGAGAATTTGG---GGCTTGTTGAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      675987  84 -   1936607 TGACAGAGACAAGACT------------TGAG-----CAAGATAGGAACAAACCCATA--AAGTTCTCAGACCTCTGGCTATGAGAATTTGG---GGCTTGTTGAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138616675  88 - 171630274 TGGCAAAGACACCAAA------------TGAGCACATGAAGATAGGAACAAACCCATA--AAGTTCTCAGACCTCTGGC-CTGAGACTCTGG---GGCTAGTTTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            174351  88 +   1154217 TGACAGAGACAACACT------------GGAGCACATCAAGATAGGAACAAACCCATA--AAGTTCTCAGACCTCCGGC-CTGAGAATCTGG---GGCTTGTTTGC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14001280  88 +  15232693 TGACAGAGACAACACT------------TGAGCACATCAAGATAGGAACAAACCCATA--AAATTCTCAGACCTCTGGC-CTGAGAATTTGG---GGCTTGTTTAT
i cebCap1.NW_016107339v1   I 25 C 0
s aotNan1.NW_018508875v1      243607  88 +    446445 TGACAGAGACAACACT------------TGAGTACATCAAGATAGGAACAAACCCATA--AAGTTCTCAGACCTCTGGC-CTGAGAATCTGC---AGCTTGTTTAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4432316  87 + 123392446 TGACAGAGACAAG-TT------------TGAGCACATCAGGAAAGGAACAAACCCATA--AAGTTCTTGGGCCTGGGGC-ATGAACGTTTTG---GGCTTATTTAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       78434  88 +   1371726 TGACAGAGACAAGATT------------TGAGCACATCAAGAACGGAACAAACCCATA--AAGTTCTTGGGTCTGTGGC-GTGAAAGTTTTG---GGCTTGTTTAC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15312250  61 -  18854210 TGACAGAGTCAGG-CT------------TGAGCACATCAAGAAAGGAGCAAACCCATA--AAGTTCTTGAGCC------------------------------TAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34344172 102 +  94987271 TGAATAAACCAAGACTACaaaaaaaaaaaaaaaaaaaaaaaaaaGGAACAAACTTCTA--AAATCCCTGGGCCTGTGGC-CTGAGAATTAGATTTGCTGTGCTGA-
i mm10.chr17               C 0 C 0
s canFam3.chr12             70362402  90 -  72498081 TGGTAAGGATGAGATA------------TGAGCACATCAGGAAAGGAACAAACTCATATGAAATTCTTGGGCCTGTGGC-ATGAGAAGTAGG---GACTTGTTTAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            275671  86 +    935526 TGGCAGAGGCCAGACA-------------ATGAACATCAATAAAGGAACAAAACCGTG--AGGATCTTGGGCCTGTGAC-ATGAGAATCTG----GGCTTGCTGAT
i dasNov3.JH569424         C 0 N 0

a score=6499212.000000
s hg38.chr6_KI270758v1_alt     11922 378 +     76752 GGCAAGGTTAGA-CCCTTGGAGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCAACTACTTTCAAACTATGGATTCCCATGTCCAGGAG-------TGCAGC-AGAGAGGGAGGTACCATTGGTGATCGGAGTATAGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACATGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCGCCTGATTGGTCAGGATTCAGATAGAACTCGGCCTGGATGATCACATGTTCTTCTG-AAAGGC----AAGAAA
s panTro5.chr6             142711686 378 - 175400573 GGCAAGGTTAGG-CCCTTGGAGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCAACTACTTTCAAACTATGGATTCCCATGTCCAGGAG-------TGCAGC-AGAGAGGGAGGTACCATTGGTGATCGGAGTATAGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCGCCTGATTGGTCAGGATTCAGATAGAACTCGGCCTGGATGATCACATGTTCTTCTG-AAAAGC----AAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863290 378 - 173848474 GGCAAGGTTAGG-CCCTTGGAGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCAACTACTTTCAAACTATGGATTCCCATGTCCAGGAG-------TGCAGC-AGAGAGGGAGGTACCATTGGTGATCGGAGTATAGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCGCCTGATTGGTCAGGATTCAGATAGAACTCGGCCTGGATGATCACATGTTCTTCTG-AAAAGC----AAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2381042 377 +   2807050 GGCAAAGTTAGG--CCTTGGGGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCAACTACTTTCAAACTATGGATTCCCATGTCCAGGAG-------TGCAGC-AGACAGGGAGGTACCATTGGTGATCGGAGTATAGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCGCCTGATTGGTCAGGATTCAGATAGAACTCAGCCTGGATGATCACATGTTCTTCTG-AAAGGC----AAGAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45673968 378 - 122973662 GGCAAAGTTAGG-CCCTTGGAGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCAACTACTTTCAAACTATGGATTCCCACGTCCAGGAG-------TGCAGC-AGAGAGGAAGGTACCATTGGTGATCGGAGTAGAGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCGCCTGACTGGTCAGGATTCAGATAGAACTCGGCCTGGATGATCACGTGTTCTTCTG-AAAGGC----AAGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298352 379 - 172585720 GGCAAAGTTAGGCCCCTTAGAGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCATCTACTTTCAAACTATGGATTCCCATGTCCAGGAG-------TGCAGC-AGAGAGGGAGGTACCATTGGTGATTGGAGTATTGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCTCCTGATTGGTCAGGGTTCAGATAGAACTCAGCCTGGATGATCACGTGTTCTTCTG-AAAGGC----AAGAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138458668 378 + 170955103 GGCAAAGTTAGGCCCCTTAGAGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCATCTACTTTCAAACTATGGATTCCCACGTCCAGGAG-------TGCAGC--GAGAGGGAGGTACCATTGGTGATTGGAGTATTGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCTCCTGATTGGTCAGGGTTCAGATAGAACTCAGCCTGGATGATCACGTGTTCTTCTG-AAAGGC----AAGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      174880 379 +    407600 GGCAAAGTTAGGCCCCTTAGAGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCATCTACTTTCAAACTATGGATTCCCATGTCCAGGAG-------TGCAGC-AGAGAGGCAGGTACCATTGGTGATTGGAGTATTGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCTCCTGATTGGTCAGGGTTCAGATAGAACTCAGCCTGGATGATCACGTGTTCTTCTG-AAAGCC----AAGAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47354 379 +    463628 GGCAAAGGTAGGCCCCTTAGAGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCATCTACTTTCAAACTATGGATTCCCACGTCCAGGAG-------TGCAGC-AGAGAGGGAGGTACCATTGGTGATTGGAGTATTGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCTCCTGATTGGTCAGGGTTCAGATAGAACTCAGCCTGGATGATCACGTGTTCTTCTG-AAAGGC----AAGAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39625505 379 +  71996105 GGCAAAGTTAGGCCCCTTAGAGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCATCTACTTTCAAACTATGGATTCCCATGTCCAGGAG-------TGCAGC-AGAGAGGGAGGTACCGTTGGTGATTGGGGTATTGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCTCCTGATTGGTCAGGGTTCAGATAGAACTCAGCCTGGATGATCACGTGTTCTTCTG-AAAGGC----GAGAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       45679 379 -    115496 GGCAAAGGTAGGCCCCTTAGAGGGAAAATCAG----TTACAATAATCTAACACAAAGAGCTGAAGCATCTACTTTCAAACTATGGATTCCCATGTCCAGGAG-------TGCAGC-AGAGAGGGAGGTACCATTGGTGATTGGAGTATTGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACTGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCTCCTGATTGGTCAGGGTTCAGATAGAACTCAGCCTGGATGATCACGTGTTCTTCTG-AAAGGC----AAGAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      676071 379 -   1936607 AGTAAAGTTAGGCCCCTCAGAGGAAAAATCAG----TTACAATAATCTAACACAAAGAGTTGAAGCATCTACTTTCAAACTATGGATTCCCATGTCCAGGAG-------TGCAGC-AGAGAGGGAGGTACCATTGGTGATTGGAGTATTGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCTTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCTCCTGATTGGTCAGGGTTCAGATAGAACTCAGCCTGGATGATCACATGTTCTTCTG-AAAGGC----AAGAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138616763 378 - 171630274 AGGAAAGTTAGGCCCCTTAGAGGGAAAATCAG----TTACAATAATCTAACACAAAAAGCTGAAGCATCTATTTC-AAACTCTGGATTCCCATGTCCAGGAG-------TGCAGC-AGAGAGGAAGGTACCGTTGGAGATCGGAGTATTGTTGGAACGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAGTGCACCCTGGGCCTCAAAGCTGGCGAATTTCCCAAATTCTTCAAGTCGCCAGACCGTCTCCTTCTTTGTCATATCCACGTGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCCCCTGATTGCTCAGGGTTCAGATAGAACTCGGCCTGGATGATCACGTGTTCTTCTG-AAAGGC----AAGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            174439 379 +   1154217 GGGAAAGTTAGACCCCTTAGAGGGAAAATCAG----TTACCATAATCTAACACAAAAAGCTGAAGCATCTATTTTAAAACTATGGATTCCCATATCCAGGAA-------TGCAGC-AGAGAGGAAGGTACCGTTGGAGATCGGAGTGTTGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAGTGCACCCTGGGCCTCAAAGCTGGCAAATTTCCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGTCACATCCACATGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCCCCTGATTGGTCAGGGTTCAGATAGAACTCGGCCTGGATGATCACATGTTCTTCTG-AAAGGC----AAGAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14001368 365 +  15232693 GGGAAAGTTAGGCCCCTTAGAGGGAA-----------------AATCTAACAC--AGAGCTGAAGCATCTATTTTCAAACTATGGATTCCCATTTCCAGGAG-------TGCAGCAAGAGAGGGAGGTACCATTGGAGATCGGAGTGTTGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAGTGCACCCTGGGCCTCAAAGCTGGCAAATTTCCCAAATTCTTCAAGCCGCCAGACCGTCTCCTTCTTTGCCACATCCACATGGAAAATCTCATCACCATCAAAGTCAAACATAAACTCCCCTGCTTGGTCAGGGTTCAGATAGAACTCGGCCTGGATGATCACGTGTTCTTCTG-AAAGGC----AAGAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      243695 383 +    446445 GGGAAAGTTAGGCCCCTTAGAGGGAAAATCAG----TTACAATAATCTAACACAAAAAGCTGAAGCATCTATTTTCAAACTATGGATTCCCATGTCCAGGAG-------TGCAGC-AGAGAGGAAGGTACCGTTGGAGATCGGAGTATTGTTGGAGCGCTTTGTCATGATTTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAGTGCACCCTGGGCCTCAAAGCTGGCAAATTTCCCAAATTCTTCAAGCCGCCAGACTGTCTCCTTCTTTGCTATATCCACATGGAAAATCTCATCACCATCAAAGTCAAACATATACTCCCCTGACTGGTCAGGGTTCAGATAGAACTCGGCCTGGATGATCACATGTTCTTCTg-aaaggcaagaaagaaa
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4432403 379 + 123392446 GGCAAGGTTAAGCCCCTGGCAGGAAAAGTCAG----TCACAATAATACGACACAAAGAGCGTAAGCATCTA-CTGAAAGCCTTGGGTGCCCGCGTCCGGGAG-------CGCAGC-AGAGAGAGAGCTACCGTTGGTGTTCGGGGTGTGGTTCGAGCGCTTCATCATGATGTCCAGGTTGGCTTTGTCCACGGCTATGTTGGCCAGTGCACCCTGAGCCTCAAAGCTGGCAAATCGCCCAAATTCCTCAAGCCGCCAGACCGTCTCCCTCTTGTCCATGTCCACATGGAAAATCTCATCGCCATCAAAGTCAAACATAAACTCGCCTGACTGGTCAGGGCCCAGATAGAACTCGGCCTGGATGATCACATGCTCCTCTGGAAAGGC----AGGAAA
i micMur3.chr6             C 0 I 192
s proCoq1.NW_012150019v1       78522 380 +   1371726 AGCAAGGTTAAGCCCCTGGGAGGAAAAGTCAG----TCACAGTAATACTACACAAAGGGCTTAAGCATCTATTTTAAAGCCATGGATACCCACATCCAGGAG-------CGCAGC-AGAGAGACAGTTACCATTGGTGTCCGGGGTGTTGTTAGAGCGCTTCATCATGATTTCCAGGTTGGCTTTGCCCACAGCTATATTGGCCAATGCACCCTGAGCCTCAAAGCTGGCAAATCGTCCAAATTCTTCAAGCCGCCAGATCGTCTCCTTCTTGTCCATGTCCACATGGAAAATCTCATCGCCATCAAAGTCAAACATAAACTCTCCTGATTGGTCAGGGGCCAGATAGAACTCAGCCTGGATGATCACATGTTCCTCTGAAAAGGC----AGGAAA
i proCoq1.NW_012150019v1   C 0 I 187
s otoGar3.GL873550          15312311 375 -  18854210 GACAAGGTTAGGCCCCTGGG----AAAGTCAG----TCACAACAATAGGACACAAAGAGCTTAAGTGTCTATTCTAAAGCTATGGATCCCCATACCCAGGAG-------TGCAGC-AGAGAGAGAGTTACCATTGGTGTCCGGGGTGTTGTTGGAGCGCTTTATCATGATGTCCAGGTTGGCTTTGTCCACAGCTATGTTGGCCAATGCACCCTGCGCCTCAAAGCCGGCATATTGTCCAAATTCTTCAAGCCGCCAGACTGTCTCTTTCTTTCCCATATCCACATGGAAAATCTCATCACCATCGAAGTCAAACATAAACTCTCCTGATTGGTCAGGAGACAGATAGAACTCGGCCTGGATGATCACATGTTCCTCTGGAAAGGC----AGGAA-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34344274 381 +  94987271 -GCAAACTTAGG--TCTTAGAAGGGCAAGCAAGACCTCCTTACACCCTTATAGAATTCGCCAAAGTATCTATTTACAG---CTGCGTTCCCACATCTGGGAGGAGGGGATAGGGA-GGAGAGGCAGGTACCGTTGGCATCTGGAGTGTTGTTGGAACGCTCTTTCATGACATCCAGGTTAGCTTTGTCCACAGCTATATTAGCCAGTGCACCCTGAGCCTCAAAGCTGGCAAACTTTGCAAATTCTTCAAGTCTCCAGATGGTCTCTGACTTTTCAATGTCTACATGGAAAATCTCATCGCCGTCAAAGTCAAACATAAACTCTCCACGTTTGTCTGGTAAAAGATAGAACTCCGCCTGGATGATGGTGTGTTCCTCTG-AAAAGA----AAG---
i mm10.chr17               C 0 C 0
s canFam3.chr12             70362492 366 -  72498081 GGCCACACTAGGCCCCTGGGAGGGAAAGTCAG----TCACAATAATGTAACACATA-AGCTGAAGCATCTATTTCAAAGTTATG-ATCCCCATGTCTAGGAG-------TGCAGC---------ACGTACCATTGGTGTTCGGGGTGTGGTTGGAGCGCTTTATCATTGTGTCAAGGTTAGCTTTGTCCACAGCTATGTTGGCCAAGGCACCCTGGGCCTCAAAGCTGGCAAAACGTCCAAATTCTTCAAGGCGCCACACCGTCTCCTTCTTTTCCATATCCACGTGGAAAATCTCATCACCATCGAAGTCAAACATGAACTCGCCTGATGGGTCAGGGGTCAGATAGAACTCAGCCTGGATGATTACGTGCTCCTCTG-AAAAGG----CAG---
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            466101 334 +    935526 GACAAGGTTAGG-CCTGTGGAAGGGAATCCAG----TAACTGTAGCATAA-ACAAGGAGC---------------------------CCCC----------G-------CCCAGC-AGGGA---AGGTACCGCTGGTGTCAGGAGTGTAGTTGGAGCGTTTCATCATTATTTCCAGGTTGGCTTTGTCTACAGCGATGTTGGCCAATGCACCCTGAGCCTCAAAGCTGGAAAAACGTCCAAATTCTTCAAGCCGCCAGACTGTCTCCTTCTTATCCAAATCCACATGAAAAATCTCATCACCATCAAAGTCAAACATAAACTCCCCTGATGGGTTAGGGGTCTGATAGAACTCGGCCTGGATGATCACATGCTCCTCTG-AAAAGG----AAG---
i dasNov3.JH569424         N 0 C 0

a score=2093624.000000
s hg38.chr6_KI270758v1_alt     12300 194 +     76752 TGGAGAAAGAGAGTTGGGTGGGGGGAATCAAGAGAGGGAAATGA---ATA----AC------CT------------ACATACATGTAG--GCAGGAA---GTAGTGGAGAGAGATTGGGCCAAGAGGAATGAAAGAATGATGGCGAGTAGGGATGAGTGACAAGACAAGGTCTGGGTGAAGGGCATGC-TGCTGAACAAAGCTGGG----AGGGGAAAAACAAGAAGGA
s panTro5.chr6             142712064 194 - 175400573 TGGAGAAAGAGAGTTGGGTGGGGGGAATCAAGAGAGGGAAATGA---ATA----AC------CT------------ACATACATGTAG--GCAGGAA---GTGGTGGAGAGAGATTGGGCCAAGAGGAATGAAAGAATGATGGCAAGTAGAGATGAGTGACAAGACAAGGTCTGGGTGAAGGGCATGC-TGCTGAACAAAGCTGGG----AGGGGAGAAACAGGAAGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863668 194 - 173848474 TGGAGAAAGAGAGTTGGGTGGGGGGAATCAAGAGAGGGAAATGA---ATA----AC------CT------------ACATACATGTAG--GCAGGAA---GTGGTGGAGAGAGATTGGGCCAAGAGGAATGAAAGAATGATGGCAAGTAGAGATGAGTGACAAGACAAGGTCTGGGTGAAGGGCATGC-TGCTGAACAAAGCTGGG----AGGGGAGAAACAGGAAGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2381419 194 +   2807050 TGGAGAAAGAGAGTTGGGTGGGGGGAATCAGGAGAGGGAAATGA---ATA----AC------CC------------ACATACATGTAG--GCAGGAA---GTGGTGGAGAGAGATTGGGCCAAGAGGAATGAAAGAATGATGGCAAGTAGAGATGAGTGACAAGACAAGGTCTGGGTGAAGGGCATGC-TGCTGAACAAAGCTGGG----AGGGGAGAAACAGGAAGGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674346 194 - 122973662 TGGAGAAAGAAAGTTGGGTGGGGGGAATCAGGAGTGGGAAATGA---ATA----AC------CC------------ACATACATGTAG--GCAGGAA---GTGGTGGAAAGAGATTGGGCCAAGAGGAATGAAAGAATGATGGTGAGTAGGGATGAGTGACAAGACAAGGTCTAGGTGAAGGCCATGC-TGCTGAACAAAGCTGGG----AGGGGAGAAACAAGAAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298731 190 - 172585720 GGG----AGAGAGTTGGGTGGGGGAAATCAGGAGAGGGAAATGA---ATA----AC------CC------------ACATACATGTAG--GCAGGAA---GTGGTGGAGAGATATTGGGCCAAGAGGAATGAAAGAATGATGGCGAGTAGGGATGAGTGACAAGAGAAGCTCTGGGTGAAGGACATGC-TGTTGAACAAAGCTGGG----AGGTGAGAAACGAGAAGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459046 190 + 170955103 GGG----AGAGAGTTGGGTGGGGAAAATCAGGAGAGGGAAATGA---ATA----AC------CC------------ACATACATGTAG--GCAGGAA---GTGGTGGAGAGACATTGGGCCAAGAGGAATGAAAGAATGATGGCGAGTAGGGATGAGTGACAAGGCAAGTTCTGGGTGAAGGACATGC-TGTTGAACAAAGCTGGG----AGGTGAGAAACAAGAAGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175259 190 +    407600 GGG----AGAGAGTTGGGTGGGGGAAATCAGGAGAGGGAAATGA---ATA----AC------CC------------ACATACATGTAG--GCAGGAA---GTGGTGGAGAGATATTGGGCCAAGAGGAATGAAAGAATGATGGCGAGTAGGGATGAGTGACAAGAGAAGCTCTGGGTGAAGGACATGC-TGTTGAACAAAGCTGGG----AGGTGAGAAACGAGAAGGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47733 190 +    463628 GGG----AGAGAGTTGGGTGGGGAAAATCAGGAGAGGGAAATGA---ATA----AC------CC------------ACATACATGTAG--GCAGGAA---GTGGTGGAGAGACATTGGGCCAAGAGGAATGAAAGAATGATGGCGAGTAGGGATGAGTGACAAGGCAAGTTCTGGGCGAAGGACATGC-TGTTGAACAAAGCTGGG----AGGTGAGAAACAAGAAGGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39625884 189 +  71996105 GGG----AGAGAGTTGGGTGGGGGAAATCAGGAGAGGGAAATGA---ATA----AC------CC------------ACATACATGTAG--GCAGGAA---GTGGTGGAGAGACATTGGGCCAAGAGGAATG-AAGAATGATGGCGAGTAGGGATGAGTGACAAGGCAAGTTCTGGGTGAAGGACATGC-TGTTGAACAAAGCTGGG----AGGTGAGAAACAAGGAGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46058 190 -    115496 GGG----AGAGAGTTGGGTGGGGAAAATCAGGAGAGGGAAATGA---ATA----AC------CC------------ACATACATATAG--GCAGGAA---GTGGTGGAGAGACATTGGGCCAAGAGGAATGAAAGAATGATGGCGAGTAGGGATGAGTGACAAGACAAGCTCTGGGTGAAGGACATGC-TGTTGAACAAAGCTGGG----AGGTGAGAAACGAGAAGGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      676450 190 -   1936607 GGG----AGAGAGTTGGGTGGGGGAAATCAGGAGAGGGAAATTA---ATA----AC------CC------------ACATACATGTAG--GAAGGAA---GTGGTGGAGAGACATTGGGCCAAGAGGAATGAAAGAATGATGGCGAGTAGGGATGAGTGACAAGACAAGCTCTGGGTGAAGGACATGC-TGTTGAACAAAGCTGGG----AGGCGAGAAACGAGAAGGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138617141 200 - 171630274 GAAAGATAGGGAGTTGGGCGGGGGGAATCAGGAGAGAGAAATGT---ATGTGGCACTTCCTGTC------------ACGTACATGTGG--ACAGGAA---GTGGTGGGGAGAGATTGGGCCAAGAGCAATGAAGGAATGAGGGCAAGTAGGGATGAGTGACAAGACAAGGTCTGAGTGAAGGATATGC-TGCTGAACAACGCTGGG----AAGAGAGAA----GAAGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            174818 203 +   1154217 CAAAGAAAGGGAGTTGGGTGGGGGGAATCGGGAGAGGGAAGTGT---ATGTGGCACTTCCTGTC------------ACATACATGTGG--ACAGGAAGTGGTGGTGGGGAGAGATTGGGCCAAGAGAAATGAAGGAATGATGGCAAGTAGGGATGAGTGACAAGACACGGTCTGGGTGAAGGATATGC-TGCTGAACAAAGCTGGG----AAGAGAGAA----GAAGGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14001733 200 +  15232693 GAAAGAAAGGGAGTTGGGTGGGGGGAATCAGGAGAAGGAAATGT---ATGTGGCACTTCCTGTC------------ACATACATGTGG--ACAGGAA---GTGGTGGGGAGAGATTGGGCCAAGAGCAATGAAGGAATGATGGCAAGAAGGGATGAGTGACAAGGCAAGGTCTAGGTGAAGGATATGC-TGCTGAACAAAGCTGGG----AAGAGAGAA----GAAGGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      244078 200 +    446445 gaaagaaagGGAGTTGGGTGGGGGGAATCAGGAGAGGGAAATGT---ATGTGGCACTTCCTGTC------------ACATACACGTGG--ACAGGAA---GTGGTGGGGAGAGATTGGGCCAAGAGAAATGAAGGAACGATGGCAAGTAGGGATGACTGACAAGACAAGGTCTGGGTGAAGGATATGC-AGCTCAACCAAGCTGGG----AAGAGAGAA----GAAGGA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15312686 175 -  18854210 -------------------GGGGGCAGTGAGGAGAGGGAGATGG---AGA----AG------AA------------CCATGTACAGTG--GCAGGAG---ATGGTGGAGAGAGATTGGGCCAAGTGAAATAGAGAAGTGACAG--AGCAGGGACAAGAGA-AAGACTGGGTCTGGGTGGAGGACACCA-TTCTGAACAAGACTGAGGGTCAGGGGAAAAATA-GGAGCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34344655 189 +  94987271 ---GAAAGGGGATTAGGGAGGGAGATGGAAGAAGAAGATGATGA---AGA----AC------CC------------ACAGGCATTTGG--GTGGGCA---GGGATGGACGGTGACTGGGACAATCGGGATGGAAGAGC-ATAG--AATGGGAGTTAGGGAAGAAACAGGGTCTGGGTGATGGACATTCATACTGAGCAAAGCAGGC----AGGTGAGAAAGAAGGGAGA
i mm10.chr17               C 0 I 441
s canFam3.chr12             70362858 199 -  72498081 ----GGAAGAGAGTTAG--GGTGGAAACCAGGAGCAGGAGAAGAAGTAGA----AC------CCAGGATGTGAG--ACAAACATGTGGGTGTGGGCA---GTGGAAGGGA-----TTGGCCATGTGGAATGGAGGAATGATAGAGAGCAGAAATGAGCTGGAAGATGAGGCTCAGGTGCAGGACATCCATGTTGAACAGAACTAGG----AGGGGAGAAATGAAGGGCA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            466435 199 +    935526 ----GAAAGGGTGTTAG--GGTGGGAAGCAGGAGAGGAGGATGAGGAAGA----AC------CCAGGATGTGAGACACACACATGTGG--GCAGGTG---TGGGGGGAGGGG---TCGGCCAAGGGGAATGGAGGAGTCATGGAGGGCAGGGACAGGTGG-AAGATGAGGTCTAGATGGGAGCATCGA-TGCTGAACAGTGCCGGG----AGGGCAGGATTAAGAGGGC
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4432782 192 + 123392446 I
e proCoq1.NW_012150019v1       78902 187 +   1371726 I

a score=277500.000000
s hg38.chr6_KI270758v1_alt     12494 23 +     76752 CTGGTTATAAAGAGGGTGGATTG
s panTro5.chr6             142712258 23 - 175400573 CTGGTTAAAAAGAGGGTGGATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863862 23 - 173848474 CTGGTTAAAAAGAGGGTGGATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2381613 23 +   2807050 CTGGTTATAAAGAGAGTGGATTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674540 23 - 122973662 CTGGTTATAAAAAGGGTGGATTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298921 23 - 172585720 CTGGTTATAAAGAGGGTGGATTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459236 23 + 170955103 CTGGTTACAAAGAGGGTGGATTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175449 23 +    407600 CTGGTTATAAAGAGGGTGGATTG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47923 23 +    463628 CTGGTTACAAAGAGGGTGGATTG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626073 23 +  71996105 CTGGTTACAAAGAGGGTGGATTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46248 23 -    115496 CTGGTTACAAAGAGGGTGGATTG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      676640 23 -   1936607 CTGGTTATAAAGAGAGTGGATTG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138617341 23 - 171630274 CTGGTTATAAAGAGGGTGGATTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            175021 23 +   1154217 CTGGTTATAAAGAGTGTGGATTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14001933 23 +  15232693 CTGGTTATAAAGAGGGTGGATTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      244278 23 +    446445 CTGGTTATAAAGAGGGTGGAATG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15312861 23 -  18854210 TCCATGTTAGAGAGGGTGGATTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70363057 16 -  72498081 -------GAGGTAGGGTGCATTG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            466634 21 +    935526 --AGAGTTAGAGAGGGTGGATTG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34344844 441 +  94987271 I
e micMur3.chr6               4432782 192 + 123392446 I
e proCoq1.NW_012150019v1       78902 187 +   1371726 I

a score=367816.000000
s hg38.chr6_KI270758v1_alt     12517 24 +     76752 AAGGAGATGAGGGCTAAAGAACCC-
s panTro5.chr6             142712281 24 - 175400573 AAGGAGATGAGGGCTAAAGAACCC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863885 24 - 173848474 AAGGAGATGAGGGCTAAAGAACCC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2381636 24 +   2807050 AAGGAGATGAGGGCTAAAGAACCC-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674563 24 - 122973662 AAGGAGATGAGGGCTAAAGAACCC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298944 24 - 172585720 AAGGAGATGAGGGCTAAAGAACCC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459259 24 + 170955103 AAGGAGATGAGGGCTAAAGAACCC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175472 24 +    407600 AAGGAGATGAGGGCTAAAGAACCC-
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47946 24 +    463628 AAGGAGATAAGGGCTAAAGAACCC-
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626096 24 +  71996105 AAGGAGATGAGGGCTAAAGAACCC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46271 24 -    115496 AAGGAGATGAGGGCTAAAGAACCC-
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      676663 24 -   1936607 AAGGAGATGAGGGCTAAAGAACCC-
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138617364 24 - 171630274 AAGGAGATGAGGGCTAAAGAACCC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            175044 24 +   1154217 AAGGAGATGAGGGCTAAAGAACCC-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14001956 24 +  15232693 AAGGAGATGAGGGCTAAAGAACCC-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      244301 24 +    446445 AAGGAGATGAGGGCTAAAGAACCC-
i aotNan1.NW_018508875v1   C 0 I 546
s proCoq1.NW_012150019v1       79089 23 +   1371726 AAGGAGACGAGGGCTGAAAACCC--
i proCoq1.NW_012150019v1   I 187 C 0
s otoGar3.GL873550          15312884 24 -  18854210 AAGGAGATGAGGGCTGAAAAACGC-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70363073 24 -  72498081 AAGGAAATGAAGGCTGAAAATCCT-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            466655 25 +    935526 AGGGAAATGAGGGATAAAAAATCCC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34344844 441 +  94987271 I
e micMur3.chr6               4432782 192 + 123392446 I

a score=11955.000000
s hg38.chr6_KI270758v1_alt     12541 2 +     76752 AG
s panTro5.chr6             142712305 2 - 175400573 AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863909 2 - 173848474 AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2381660 2 +   2807050 AC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674587 2 - 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298968 2 - 172585720 AG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459283 2 + 170955103 AG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175496 2 +    407600 AG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47970 2 +    463628 AG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626120 2 +  71996105 AG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46295 2 -    115496 AG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      676687 2 -   1936607 AG
i colAng1.NW_012115555v1   C 0 C 0
s otoGar3.GL873550          15312908 2 -  18854210 AG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70363097 2 -  72498081 AG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            466680 2 +    935526 AG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34344844 441 +  94987271 I
e micMur3.chr6               4432782 192 + 123392446 I
e cebCap1.NW_016107339v1    14001980 0 +  15232693 C
e proCoq1.NW_012150019v1       79112 0 +   1371726 C
e aotNan1.NW_018508875v1      244325 546 +    446445 I
e calJac3.chr4             138617388 0 - 171630274 C
e saiBol1.JH378315            175068 0 +   1154217 C

a score=131371.000000
s hg38.chr6_KI270758v1_alt     12543 12 +     76752 AGTCTTGTGAAG
s panTro5.chr6             142712307 12 - 175400573 AGTCTTGTGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863911 12 - 173848474 AGTCTTGTGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2381662 12 +   2807050 AGTCTTGTGAAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674589 12 - 122973662 AGTCTTGTGAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298970 12 - 172585720 AGTCTTGTGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459285 12 + 170955103 AGTCTTGTGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175498 12 +    407600 AGTCTTGTGAAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47972 12 +    463628 AGTCTTGTGAAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626122 12 +  71996105 AGTCTTGTGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46297 12 -    115496 AGTCTTGTGAAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      676689 12 -   1936607 AGTCTTGTGAAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138617388  9 - 171630274 ---TCAGTGAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            175068  9 +   1154217 ---TCCGTGAAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14001980  9 +  15232693 ---TCAGTGAAG
i cebCap1.NW_016107339v1   C 0 C 0
s micMur3.chr6               4432974 12 + 123392446 AGTCTTGTGAAG
i micMur3.chr6             I 192 C 0
s proCoq1.NW_012150019v1       79112 12 +   1371726 AGTCTTGTCAAG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15312910  8 -  18854210 --TCTTTTG--T
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70363099 12 -  72498081 ATTCTTGTGAAG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            466682 12 +    935526 AGGATTGTAAAG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34344844 441 +  94987271 I
e aotNan1.NW_018508875v1      244325 546 +    446445 I

a score=622136.000000
s hg38.chr6_KI270758v1_alt     12555 43 +     76752 CTGTTGTTTGGCTCCATGTTACTAGC-------------------TGAGAAATTATTTTCTT
s panTro5.chr6             142712319 43 - 175400573 CTGTTGTTTGGCTCCATGTTAGTAGC-------------------TGAGAAATTATTTTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863923 43 - 173848474 CTGTTGTTTGGCTCCATGTTAGTAGC-------------------TGAGAAATTATTTTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2381674 42 +   2807050 CTGTTGTTTGGCTCCATGTTACTAGC-------------------TGAGAAATTATTTTC-T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674601 43 - 122973662 CTGTTGTTTGGCTCCATGTTACTAGC-------------------TGAGAAATTATTTTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139298982 43 - 172585720 CTGTTATCTGGCTTCATGTTACTAGC-------------------TGAGAAATTATTTTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459297 43 + 170955103 CTGTTGTCTGGCTTCATGCCACTAGC-------------------TAAGAAATCATTTTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175510 43 +    407600 CTGTTATCTGGCTTCATGTTACTAGC-------------------TGAGAAATTATTTTCTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       47984 43 +    463628 CTGTTATCTGGCTTCATGTTACTAGC-------------------TGAGAAATTATTTTCTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626134 43 +  71996105 CTGTTGTCTGGCTTCATGCCACTAGC-------------------TGAGAAATTATTTTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46309 43 -    115496 CTGTTATCTGGCTTCATGTTACTAGC-------------------TGAGAAATTATTTTCTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      676701 43 -   1936607 CTGTTGCTTGGCTTCATGTTACTAGC-------------------TGAGAAATTATTTTCTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138617397 43 - 171630274 CTGTTGTTTGACTCCATGTTACTAGC-------------------TGAGAAATTATTTTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            175077 62 +   1154217 CTGTTGTTTGACTCCATGTTACTCTCCATGAGAGTAATTTCTCCATGAGAAATTACTTTCTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14001989 43 +  15232693 CTGTTGTTTGACTCCATGTTACTAGC-------------------TGAGAAATTACTTTCTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      244871 43 +    446445 CTGTTGTTTGACTCCATGTTACTAGC-------------------TGAGAAATTATTTTCTT
i aotNan1.NW_018508875v1   I 546 C 0
s micMur3.chr6               4432986 41 + 123392446 CTGTTGTTTGGCTCC--GTTACTAGC-------------------CGGGAAATGATTTTCCT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       79124 43 +   1371726 CTGTTGTTTGTCTCCATGTTACTAGC-------------------TGGGAAATGATTTTCTT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15312918 43 -  18854210 CTGTTGTCTGGCTCCTTGCTACTAGC-------------------TGAGAAATAACTTTCCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70363111 43 -  72498081 CTGCTGTTAGGTTCCATGCTAGTAGC-------------------TGAGAAATGATTCCCTT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            466694 42 +    935526 -CCATATCTGACACCATGTTCCTAGC-------------------AGAGACAAGATTCCCTT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34344844 441 +  94987271 I

a score=1977905.000000
s hg38.chr6_KI270758v1_alt     12598 143 +     76752 -TTTAGAAATCCAGCAGCAGCCCCT-AAAGAGAAATGTTCTCTCACTTTCT-TTACCCGGGCATTAAATACACTTAGGCCAGAATTCCAGAGGATCTCTTTCTCAGAACATTGTACT-CT-AAGAAGAAAGAAACGCTGTTTGA---AAGG
s panTro5.chr6             142712362 143 - 175400573 -TTTAGAAATCCAGCAGCAGCCCCT-AAAGAGAAATGTTCTCTCACTTTCT-TTACCCGGGCATTAAATACACTTAGGCCAGAATTCCAGAGCATCTCTTTCTCAGAACATTGTACT-CT-AAGAAGAGAGAAACGCTGTTTGA---AAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140863966 143 - 173848474 -TTTAGAAATCCAGCAGCAGCCCCT-AAAGAGAAATGTTCTCTCACTTTCT-TTACCCGGGCATTAAATACACTTAGGCCAGAATTCCAGAGCATCTCTTTCTCAGAACATTGTACT-CT-AAGAAGAGAGAAACGCTGTTTGA---AAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2381716 143 +   2807050 -TTTAGAAATCCAGCAGCAGCCCCT-AAAGAGAAATATTCTCTCACTTTCT-TTAACCGGGCATTAAATGCACTTAGGCCAGAATTCCAAAGCATCTCTTTCTCAGAACATTGTACT-CT-AAGAAGAGAGAAACGCTGTTTGA---AAGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674644 143 - 122973662 -TTTAGAAATCCAGCAGCAGCCCCT-AAAGAGAAATGTTCTCTCACTTTCT-TTACCCAGGCATTAAATACACTTAGGCCAGAATTCCAGAGCATCTCTTTCTCAGAACATTGTACT-CT-AAGAAGAGAGAAACGCTGTTTGA---AAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299025 142 - 172585720 -TTTAGAAATCCAGCAATAGCCCCT-AAAGAGAAATGTTCTC-CACCCTCT-TTATCCAGGCATTAAATACACTTAGGCAAGAATTCCAGAGCATCTCTTTCTCAGAACATTGTACT-CT-AAGAAGAGAGAAACGCTGTTTGA---AAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459340 142 + 170955103 -TTTAGAAATCCAGCAGTAGCCCCT-AAAGAGAAATGTTCTC-CACCCTCT-TTATCCAGGCATTAAATACACTTAGGCAAGAATTCCAGAGCATCTCTTTCTCAAAACATTGTACT-CT-AAGAAGAGAGAAACGCTGTTTGA---AAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175553 145 +    407600 -TTTAGAAATCCAGCAATAGCCCCT-AAAGAGAAATGTTCTC-CACTCTCT-TTATCCAGGCATTAAATACACTTAGGCAAGAATTCCAGAGCATCTCTTTATCAGAACATTGTACT-CT-AAGAAGAGAGAAACACTGTTTGAAACAAGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48027 139 +    463628 -TTTAGAAATCCAGCAATAGCCCCT-AAAGAGAAATGTTCTC-CACTCTCT-TTATCCAGGCGTTAAATACACTTAGGCAAGAATTCcagagcagctctttctcagaacattgtact-ct-aagac---agaaacgctgtttga---aagg
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626177 142 +  71996105 -TTTAGAAATCCAGCAGTAGCCCCT-AAAGAGAAATGTTCTC-CACTGTCT-TTATCCAGGCGTTAAATACACTTAGGCCAGAATTCCAGAGCATCTCTTTCTCAGAACATTGTACT-CT-AAGAAGAGAGAAACGTTGTTTGA---AAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46352 141 -    115496 -TTTAGAAATCCACCAA-AACCCCT-AAAGAGAAATGTTCTC-CACTCTCT-TTATCCAGGCGTTAAATATACTTAGGCCAGAATTCCAGAGCATCTCTTTCTCAGAACATTGTACT-CT-AAGAAGAGAGAAACATTGTTTGA---AAGG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      676744 141 -   1936607 -TTTAGAAATCCAACAGTAGCCCCT-AAAGAGAAATGTTCTC-CACTCTCT-TTATCCAGGCGTT-AATACACTTAGGCCAGAATTCCAGAGCATCTCTTTCTCAAAACATTGTACT-CT-AAGAAGAGAGAAATGCTGTTTGA---AAGG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138617440 120 - 171630274 -TTTAGAA------------------------AAATGTTTTCTCCCTCTCT-TTACCCAGGCACTAAATACACTTAGGCCAGAATTCCAGAGCATCTGTTTCTCAGAACATTGTACT-CT-AAAAAGAGAGAAATGCTGTGTGA---ACGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            175139 143 +   1154217 -CTTAGAAATCCAGCAGCAGCCCCT-AAAGAGAAATGTTTTCTCCCTCTCT-TTACCCAGGCACTAAATACACTTAGGCCAGAATTCCAGAGCATCTGTTTCTCAGAACATTGTACT-CT-AAAAAGAGAGAAATCCTGTTTGA---AAGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14002032 143 +  15232693 -TTTAGAAATCCAGCAGCAGCCCCT-AAAGAGAAATGTTTTCTCCCTCTCT-TTACCCAGGCACTAAATACTCTTAGGCCAGAATTCCAGGGCATCTGTTTCTCAGAACATTGTACT-CT-AAAAAGAGAGAAATGCTGTTTGA---AAGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      244914 143 +    446445 -TTTAGAAATCCAGCAGCAGCCCCT-AAAGAGAAATGTTTTCTCCCTCTCT-TTACCCAGGCACTAAATACACTTAGGCCAGAATTCCAGAGCATCTGTTTCTCAGAACATTGTACT-CT-AAAAAGAGAGAAATGCGGTTTGA---AAGG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433027 129 + 123392446 -TTTAGAAATCCAGCAGCAACCCCTAAAAGAGAAATGTCCTCTCACTCTCC-TTACCCAGGCATTCAATACTCTCAGGCCAGAATTCCAGAGCACC------CCAGAACATT-TACT-CC-----AGGAAGAAACA----TTGA---AAGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       79167 139 +   1371726 -TTTAGAAATCCAGCAGCAGCTCCTAAAAGAGAAATGTTCTCTCACTCTCT-TTACCCAGGCATTAAATATACTCAGGCCAGAATTCCAGAGCATC------TCAGAACATTGTACT-CTTAAGAAGAAAGAAACACTGTTTGA---AAGG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15312961 136 -  18854210 -TTTAGAAATCCAGCAGCAGCCCCTGAAAGAGAAATGTTCTCTCACTCTC---TACCCAAGCATGAAATACACTTAGG-CAGAATTCCAGGGCATCT-----TCAGCACATTGTATT-CT-AAGAAGATAAAAACACCATTTGA---AAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34345285 143 +  94987271 -TTTCGAAATTTGGCTACAGTGCAT-CAGAAAAAAGCATCCCTTGTTCCCTGTTGTGCAGGGATTAAATA-GCTTGGGTCAGCACACAGGGGCTTCTTTTTATCCTGGCACTGTACT-CT-CCGAGTAGAGAAGTGTTATTTGA---AAGG
i mm10.chr17               I 441 C 0
s canFam3.chr12             70363154 137 -  72498081 -TTTGGAAATCTAGCAGCAATTCCT-AAAATAGAA---TCACTCACTGTAT-TTTCCCAGGCATTAAATACAATTAAACAAGAGTTCTAGGGCCTC----TCTCAGAGCACTGGATTATT-AAGAAGAGGGAAACACTGTTTAA---AAgg
i canFam3.chr12            C 0 I 187
s dasNov3.JH569424            466736 116 +    935526 TTTAAGAAATTGAGCAGCAATTCCTAAAAGAGAAATGTTCTCTCTTGTGCT-CT------------AATAC-------CCAGATTTCCAAAGCA---CTTTCCCAGAACCTTGCACT----AAAAAGATAAAA-----GGTTGA---AAGG
i dasNov3.JH569424         C 0 C 0

a score=1904018.000000
s hg38.chr6_KI270758v1_alt     12741 135 +     76752 TTGGGTTTTAAActctgggatcaaa-aacatcttgaattctt--attcag----caac----ttacctagtgatcctgagcagattatt-ctacctattt-atgtatagttttcctattatgtagccctgctgtggttttgatcctgt
s panTro5.chr6             142712505 135 - 175400573 TTGGGTTTTAAActctgggatcaaa-aacatcttgaattctt--attcag----caac----ttacctagtgatcctgagcagattatt-ctacctattt-atgtatagttttcctattatgtagccctgctgtggttttgatcctgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864109 135 - 173848474 TTGGGTTTTAAActctgggatcaaa-aacatcttgaattctt--attcag----caac----ttacctagtgatcctgagcagattatt-ctacctattt-atgtatagttttcctattatgtagccctgctgtggttttgatcctgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2381859 135 +   2807050 TTGGGTTTTAAActctaggatcaaa-aaaatcttgaattctt--attcag----caac----ttacctagtgatcctaagcagattatt-ctacctattt-atgtatagttttcctattatgtagccctggtgtggttttgatcctgt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674787 136 - 122973662 TTGGGTTTTAAActctgggatcaaataaaatcttgaattctt--attcag----caac----ttacctagtgatcctgagcagattatt-ctacctattt-atgtgtagttttcctattatgtagccctgctgtggttttgatcttgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299167 136 - 172585720 TTGGGTTTTAAACTCTGGAATCAAATAAAATCTTGAATTCTT--ATTCAG----CAAC----TTACCTAGTTATCCTGAGCAGATTATT-CTACCTATTT-ATGTGTAATTTTCCTATTATGTAGTCCTGCTGTGGTTTTGATCCTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459482 136 + 170955103 TTGGGTTTTAAACTCTGGAATCAAATAAAATCTTGAATTCTT--ATTCAG----CAAC----TTACCTAGTTATCCTGAGCAGATTATT-CTACCTATTT-ATGTGTAATTTTCCTATTATGTAGTCCTGCTGTGGTTTTGATCCTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175698 136 +    407600 TTGGGTTTTAAAATCCGGGATCAAATAAAATCTTGAATTCTT--ATTCAG----CTAC----TTACCTAGTTATCCTGAGCAGATTATT-CTACCTATTT-ATGTGCAATTTTCCTATTATGTAGCCCTGCTGTGGTTTTGATCCTGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48166 136 +    463628 ttgggttttaaaATCTGGGATCAAATAAAATCTTGAATTCTT--ATTCAG----CTAC----TTACCTAGTTATCCTGAGCAGATTATT-CTACCTATTT-ATGTGTAATTTTCCTATTATGTAGCCCTGCTGTGGTTTTGATCCTGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626319 136 +  71996105 TTGGGTTTTAAACTCTGGGATCAAATAAAATCTTGAATTCTT--ATTCAG----CAAC----TTACCTAGTTATCCTGAGCAGATTATT-CTACCTATTT-ATGTGTAATTTTCCTATTATGTAGCCCTGCTGTGGTTTTGATCCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46493 136 -    115496 TTGGGTTTTAAACTCTGGGATCAAATAAAATCTTGAATTCTT--ATTCAG----CAAC----TTACTTAGTTCTCCTGAGCAGATTATT-CTACCTATTT-ACGTGTAATTTTCCTATTATGTAGCCCTGCTGTGGTTTTGATCCTGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      676885 136 -   1936607 TTAGGTTTTAAACTCTAGCATCAAATAAAATCTTGAATTCTT--ATTCAG----CAAC----TTACCTAGTTATCCTGAGCAGATTATT-CTACCTATTT-ATGCGCAATTTTCCTATTATGTAGTCCTGCTGTGGTTTTGATCCTGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138617560 136 - 171630274 CTGGGTTTTAAACTCTGGAATCAAATAAAATCTTGAATTCTT--ATTCAG----CAAC----TTACCTAGTGATACTGAACAGATTATT-CTACCTATTT-ATGTGTAGTTTTCCTATTATGTAGTCCTGCTGTGGTTTCCATCCTGT
i calJac3.chr4             C 0 I 301
s saiBol1.JH378315            175282 136 +   1154217 CTGGGTTTTAAACTCTGGAATCAAATAAAATCCTGAATTCTT--ATTCAG----CAAC----TTACCTAGTGATACTGAACAGATTATG-CTATCTATTT-ATGTGTAGTTTTCCTATTATGTAGTCCTGCTGTGGTTTCCATCCTGT
i saiBol1.JH378315         C 0 I 302
s cebCap1.NW_016107339v1    14002175 135 +  15232693 CT-GGTTTTAAACTCTGGAATCAAATAAAATCTTGAATTCTT--ATTCAG----CAAC----TTACCTAGTGATACTGAAGAGATTATT-CTATCTATTT-ATGTGTAGCTTTCCTATTATGTAGTCCTGCTGTGGTTGCCATCCTGT
i cebCap1.NW_016107339v1   C 0 I 301
s aotNan1.NW_018508875v1      245057 136 +    446445 CTGGGTTTTAAACTCTGGAATCAAATAAAATCTTGAATTCTT--ATCCAG----CAAC----TTACCTAGTGATACTGAACAGATTATT-TTACCTATTT-ATGTGTAGTTTTCCTATTATGTAGTCCTGCTGTGGTTTACATCCTGT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433156 136 + 123392446 TTGGGATTTGACCTCTGGAATCAAATAAAATCTTAAATTCTT--ATTTGG----CCAC----TTGCCTAGAGCTCTTGAGCAGATTATT-CTACCTACGT-ATGTATAGTTTTCTTATTACATGGTTCAGTTGTGGTTTTGATTCTGT
i micMur3.chr6             C 0 I 10
s proCoq1.NW_012150019v1       79306 136 +   1371726 TTGggatttgaactctggaatcacataaaatcttaaattctt--actcag----ctac----ttatctagcgatcttgagcagattatt-ctacctacat-atgtgtagttttcttattacatagttctgttgtggttttgattctgt
i proCoq1.NW_012150019v1   C 0 I 10
s otoGar3.GL873550          15313097 127 -  18854210 TTGGGGACTGAATGGCGGAATCAAGTAAAATATTAAATTCTT--ATTAAG----CTAC----CTACCTAGTGAACTCG-GTAGATTTTT-CTACCTACTT-ACATGTGG--------TTATATAGTTCTGCTGTGGTTCTGATTCTGT
i otoGar3.GL873550         C 0 I 10
s mm10.chr17                34345428 120 +  94987271 ATCCTTTGGGAACTTGGGAACTGATTACAATTGTGA-------------------CAC----TCACCCTGTTA-ACTGAGCATATCACTACTGTCTACTTAATAAGGGAGTTTCCTGTCA--TACCTCTGCTGAG--TCCCATTCTAT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70363478 135 -  72498081 CTAGGTTCTGAACTCTGG-ATCTAATTAAATCTTTAATTCTT--ATTCAGGTATTTAC----TTATCTAGTGGT-TTAAATGGATTATT-TTATCTACTT-CTTTGCAGTTTTCCTATTATAT---TCTCTTATGGTTTTGCTTCTAA
i canFam3.chr12            I 187 C 0
s dasNov3.JH569424            466852 135 +    935526 TTGACTTCTGAGCTCTGAAATCAAA-----TCTTACAGTGTTTCCTTTAG----CTACTTCTTTGCCCAGCAATCTTGAGGAGAATATT-CTCCCTATTT-GGGTGTAGTGTTCTAATTA--TAATTCTGTTGTGATTTTGCTTTTCC
i dasNov3.JH569424         C 0 C 0

a score=155228.000000
s hg38.chr6_KI270758v1_alt     12876 10 +     76752 cagg---ggtttg--
s panTro5.chr6             142712640 10 - 175400573 cagg---ggtttg--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864244 10 - 173848474 cagg---ggtttg--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2381994 10 +   2807050 cagg---ggtttg--
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674923 10 - 122973662 cagg---ggtttg--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299303 10 - 172585720 CAGT---GGTTTG--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459618 10 + 170955103 CAGG---GGTTTG--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175834 10 +    407600 CAGG---GGTTTG--
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48302 10 +    463628 CAGG---GGTTTG--
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626455 10 +  71996105 CAGG---GGTTTG--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46629 10 -    115496 CAGG---GGTTTG--
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677021 10 -   1936607 CAGG---GGTTTG--
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138617997 10 - 171630274 CAGG---GGTTTG--
i calJac3.chr4             I 301 C 0
s saiBol1.JH378315            175720 10 +   1154217 CAGG---GGTTTG--
i saiBol1.JH378315         I 302 C 0
s cebCap1.NW_016107339v1    14002611 10 +  15232693 CAGG---GGTTTG--
i cebCap1.NW_016107339v1   I 301 C 0
s aotNan1.NW_018508875v1      245193 10 +    446445 CAGG---GGtttg--
i aotNan1.NW_018508875v1   C 0 I 300
s micMur3.chr6               4433302 10 + 123392446 CATG---GGTTTG--
i micMur3.chr6             I 10 C 0
s proCoq1.NW_012150019v1       79452 10 +   1371726 catg---ggtttg--
i proCoq1.NW_012150019v1   I 10 C 0
s otoGar3.GL873550          15313234 10 -  18854210 TGTG---GACTTG--
i otoGar3.GL873550         I 10 C 0
s mm10.chr17                34345548 13 +  94987271 CAGGATAGGTTTG--
i mm10.chr17               C 0 C 0
s canFam3.chr12             70363613 10 -  72498081 CTTG---AATTTG--
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            466987 12 +    935526 CATG---GGTTTTTT
i dasNov3.JH569424         C 0 C 0

a score=273969.000000
s hg38.chr6_KI270758v1_alt     12886 18 +     76752 tttttaagattaaatgag
s panTro5.chr6             142712650 18 - 175400573 tttttaagattaaatgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864254 18 - 173848474 tttttaagattaaatgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382004 18 +   2807050 tttttaagattaaatgag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674933 18 - 122973662 tttttaagattaaatgag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299313 18 - 172585720 TTTTTAAGATTAAATTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459628 18 + 170955103 TTTTTAAGATTAAATTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175844 18 +    407600 TTTTTAAGATTAAATTAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48312 18 +    463628 TTTTTAAGATTAAATTAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626465 18 +  71996105 TTTTTAAGATTAAATTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46639 18 -    115496 TTTTTAAGATTAAATTAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677031 18 -   1936607 TTTTTAAGATTAAATTAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618007 18 - 171630274 TTTTTAAGATTAAACGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            175730 18 +   1154217 TTTTTAAGTTTAAATGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14002621 18 +  15232693 TTTTTAAGTTTAAATGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245503 18 +    446445 TTTTTAAGATTAAACGAG
i aotNan1.NW_018508875v1   I 300 C 0
s micMur3.chr6               4433312 18 + 123392446 TTTTTAAGATTCAATCAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       79462 18 +   1371726 tttttaagatccaatgag
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313244 18 -  18854210 TTTGTATGATTAAATGAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34345561  2 +  94987271 ----------------AG
i mm10.chr17               C 0 C 0
s canFam3.chr12             70363623 18 -  72498081 TCCTTAGAATTAAATGAg
i canFam3.chr12            C 0 I 221
s dasNov3.JH569424            466999 18 +    935526 TTTTTAAGATCAAATGAG
i dasNov3.JH569424         C 0 C 0

a score=1268580.000000
s hg38.chr6_KI270758v1_alt     12904 93 +     76752 ataag-gtgagtaaTTTCTTAATATATCAACAAGACTGTAACAAGCACTGTTTACATTTTAGAGTCAGAAGCTTCTCTTTATTTAAGGGCCAAA
s panTro5.chr6             142712668 93 - 175400573 ataag-gtgagtaaTTTCTTAATATATCAACAAGACTGTAACAAGCACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864272 93 - 173848474 ataag-gtgagtaaTTTCTTAATATATCAACAAGACTGTAACAAGCACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382022 93 +   2807050 ataag-gtgagtaaTTTCTTAATATATCAACAAGCCTGTAACAAGCACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45674951 93 - 122973662 ataag-gtgagtaaTTTCTTAATATATCAACAAGCCTGTAACAAGCACTGTTTACATTTTAGAGTCAGAAGCTCCTTTTTATTTAAGGTCCAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299331 89 - 172585720 ATAAG-----GTAATTTTTTAATATATCAACAAGCCTGTAACAAGTACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459646 89 + 170955103 ATAAG-----GTAATTTTTTAATATATCAACAAGCCTGTAACAAGTACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175862 89 +    407600 ATAAG-----GTAATTTCTTAATATATCAACAAGCCTATAACAAGTACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48330 89 +    463628 ATAAG-----GTAATTTCTTAATATATCAACAAGCCTGTAACAAGTACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626483 89 +  71996105 ATAAG-----GTAATTTCTTAATATATCAACAAGCCTGTAACAAGTACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46657 89 -    115496 ATAAG-----GTAATTTCTTAATATATCAACAAGCCTGTAACAAGTACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677049 89 -   1936607 ATAAG-----GTAATTTCTTAATACATCAACAAGCCTGTAACAAGTACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618025 91 - 171630274 ATAAG-CCAAGTAATTTCTTAGTTTATCAACAAGGATGTAACAAGAACTATTTACATTTT--AGTCAGAAGCTTCCTTTTATTTAAGGGCCAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            175748 93 +   1154217 ATAAG-GCAAGTAATTTCTTAATATATCAACAAGCCTGTAACAAGCACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14002639 93 +  15232693 ATAAA-GCAAGTAATTTCTTAGTATATCAACAAGCCTGTAACAAGCACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGGGCCAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245521 93 +    446445 ATAAG-CCAAGTAATTTCTTAGTATATCAACAAGGCTATAACAAGCACTGTTTACATTTTAGAGTCAGAAGCTTCTTTTTATTTAAGACCCAAA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433330 93 + 123392446 ATAAG-GTAAGTAATTTCTAAGTATATCCACATGCCTATAACAAGCAATGTTCACAGTTTAGGGTCAGAAACTGCTTTGTATTTAAGGACCAAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       79480 91 +   1371726 ataag-gtaagtaaTTTCTAAGTATATCAACAAGCCTATAACAAGCAGTGTTCACAGTTTAGG--TAGAAACTGCTTTGTATTTAAAGACCAAA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313262 93 -  18854210 ATAAG-GTAAATAATTTCTATGTGCATCAACAAGCCTATAACAGGCACTATTCACCATTTGAGATAAAAGACTGCTTTGTATTTATGAACCAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34345563 81 +  94987271 ACAAG-------AACTTGCAGTACCCTCACCAAACC--TAACAAACTCTGCTGACAATTTCTGGTTACAAATTCCTT--TAACCAGTAGCCC--
i mm10.chr17               C 0 C 0
s canFam3.chr12             70363862 83 -  72498081 ATGAG-GTAAGTAATTTCTTAGTACATCAACAGGCTTATAACAAG---------CATTTTAGGTTCA-AAACTGCTTTATACTTAAGGAACAGA
i canFam3.chr12            I 221 I 7
s dasNov3.JH569424            467017 69 +    935526 ACAAGTGCAAGTAATTTCTTAGTAT-----------------------TGTT--CATATTAGGGTCAGAGGCTGCTTTGAATTTAAGAATGAGA
i dasNov3.JH569424         C 0 C 0

a score=17290.000000
s hg38.chr6_KI270758v1_alt     12997 1 +     76752 T
s panTro5.chr6             142712761 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864365 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382115 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675044 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299420 1 - 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459735 1 + 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175951 1 +    407600 T
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48419 1 +    463628 T
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626572 1 +  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46746 1 -    115496 T
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677138 1 -   1936607 T
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618116 1 - 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            175841 1 +   1154217 T
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14002732 1 +  15232693 T
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245614 1 +    446445 T
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433423 1 + 123392446 T
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       79571 1 +   1371726 T
i proCoq1.NW_012150019v1   C 0 I 29
s otoGar3.GL873550          15313355 1 -  18854210 T
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            467086 1 +    935526 T
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345644 0 +  94987271 C
e canFam3.chr12             70363945 7 -  72498081 I

a score=187582.000000
s hg38.chr6_KI270758v1_alt     12998 14 +     76752 CTATGGAAAATATA
s panTro5.chr6             142712762 14 - 175400573 CTATGGAAAATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864366 14 - 173848474 CTATGGAAAATATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382116 14 +   2807050 CTACGGAAAATATA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675045 14 - 122973662 CTATGGAAAATATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299421 14 - 172585720 CTATGGAAAATATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459736 14 + 170955103 CTATGGAAAATATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175952 14 +    407600 CTATGGAAAATATA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48420 14 +    463628 CTATGGAAAATATA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626573 14 +  71996105 CTATGGAAAATATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46747 14 -    115496 CTATGGAAAATATA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677139 14 -   1936607 CCATGGAAAATGTA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618117 14 - 171630274 CTTTGGAAAATATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            175842 14 +   1154217 CTTTGGAAAATATA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14002733 14 +  15232693 CTTTGGAAAATATA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245615 14 +    446445 CTTTGGAAAATATA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433424 14 + 123392446 CCATAGAAAATATG
i micMur3.chr6             C 0 I 13
s otoGar3.GL873550          15313356 14 -  18854210 CCATAGAAAATATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34345644 11 +  94987271 ---TTAGAGACATA
i mm10.chr17               C 0 C 0
s dasNov3.JH569424            467087 14 +    935526 CAATTGAAAACATA
i dasNov3.JH569424         C 0 C 0
e proCoq1.NW_012150019v1       79572 29 +   1371726 I
e canFam3.chr12             70363945  7 -  72498081 I

a score=3063490.000000
s hg38.chr6_KI270758v1_alt     13012 223 +     76752 CCTGGGGACTGAAGTACTCCAAAAATTAAGACTGAGACCTTGTAGCGTCATAGTCCCCCTGCTTCCCAGCATCCAAACCCACACGGTGGTTACCTCTATGAGAAGGTTCTCGTCTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATTATGGAAGATGTTCTGTTATGATTGACATTGAGAATAACCAACACCAAGG
s panTro5.chr6             142712776 223 - 175400573 CCTGGGGACTGAAGTACTCCAAAAATTAAGACTGAGACCTTGTAGCGTCATAGTCCCCCTGCTTCCCAGCATCCAAACCCACACGGTGGTTACCTCTATGAGAAGGTTCTCGTCTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATTATGGAAGATATTCTATTATGATTGACATTGAGAATAACCAACACCAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864380 223 - 173848474 CCTGGGGACTGAAGTACTCCAAAAATTAAGACTGAGACCTTGTAGCGTCATAGTCCCCCTGCTTCCCAGCATCCAAACCCACACGGTGGTTACCTCTGTGAGAAGGTTCTCGTCTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATTATGGAAGATGTTCTATTATGATTGACATTGAGAATAACCAACACCAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382130 223 +   2807050 ACTGGGGACTGAAGTACTCCAAAAATTAAGACTGAGACCTTGTAGCGTTGTAGTCCCCCTGCTTCCCAGCATCCAAACCCACACGGTGGTTACCTCTATGAGAAGGTTCTCGTCTGGATTGACCTTGGCAATTCTACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATTATGGAAGATGTTCTATTATGATTGACACTGAGAATAACCAACACCAAGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675059 223 - 122973662 ACTGGGGACTGAAGTACTCCAAAAATTAAAACTGAGACCTTGTAGTGTCGTAGAGCCCCTGCTTCCCGGCATCCAAACCCACACGGTGGTTACCTCGATGAGAAGGTTCACGTCTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATTCTCCTTAAATTGGGACTGTTATTACAGAACGTGTTCTATTATGATTGACACTGAGAATAACCAACACCAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299435 223 - 172585720 ACTGGGGACTGAAGTACTCCAAAAATTAAGACTGAGACCTTGTAGTGTCGTAGAGCCCCTGCTTCCCTGCATCCAAACCCACATGGTGGTTACCTCTATGAGAAGGGTCACGTTTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATTATGGAACATGTTCTATTATGATTGACACTGAGAATAACCAACACCAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459750 223 + 170955103 ACTGGAGACTGAAGTACTCCAAAAATTAAGACTGAGACCTTGTAGTGTCGTAGAGCCCCTGCTTCCCTGCATCCAAACCCACATGGTGGTTACCTCTATGAGAAGGGTCACGTTTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATTATGGAACATGTTCTATTATGATTGACACTGAGAATAACCAACACCAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      175966 223 +    407600 ACTAGGGACTGAAGTACTCCAAAAATTAAGACTGAGACCTTGTAGTGTCGTAGAGCCTCTGCTTCCCTGCATCCAAACCCACATGGTGGTTACCTCTATGAGAAGCGTCACGTTTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATTATGGAACATGTTCTATTATGATTGACACTGAGAATAACCAACACCAAGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48434 223 +    463628 ACTAGGGACTGAAGTACTCCAAAAATTAAGACTAAGACCTTGTAGTGTCGTAGAGCCCCTGCTTCCCTGCATCCAAACCCACATGGTGGTTACCTCTATGAGAAGCGTCACGTTTAGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATTATGGAACATGTTCTATTATGATTGACACTGAGAATAACCAACACCAAGG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626587 223 +  71996105 ACTGGAGACTGAAGTACTCCAAAAATTAAGACTGAGACCTTGTAGTGTCGTAGAGCCCCTGCTTCCCTGCATCCAAACCCACATGGTGGTTACCTCTATGAGAAGGGTCACGTTTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATTATGGAACATGTTCTATTATGATTGACACTGAGAATAACCAACACCAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46761 223 -    115496 ACTGGGGACTGAAGTACTCCAAAAATTAAGACTGAGACCTTGTAGTGTCGTAGAGCCCCTGCTTCCCTGCATCCAAACCCACATGGTGGTTACCTGTATGAGAAGGGTCACGTTTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTGATGCTCTTTAAATTGGGACTGTTATTATGGAACATGTTCTATTATGATTGACACTGAGAATAACCAACACCAAGG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677153 223 -   1936607 ACTGGGGACTGAAGTACTCCAAAAATTAAGACTGAGACCTTGTAGTGTCGTAGAGCCTCTGCTTCCCTGCATCCAAACTCACATGGTGGTTACCTCTATGAGAAGGGTCACGTTTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATTATGGAACATGTTCTATTATGATTGACACTGAGAATAACCAACACCAAGG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618131 223 - 171630274 ACTAGGGACTGAAATATTCTGAAAATTAAGACTGCGGCCTTGTAGCATTTCAGAGCCCCTACTTCCCTGCATCCAAACCCACACGGTGGTTACCTCTGTGAGAAGGGCCACGTTTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATAATGCAACACGTTCTATTAGGACTAACACTGAGAACAACCAACACCAAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            175856 220 +   1154217 ACTGGAGACTG---TAATCTGAAAATTAAGACTGAGTCCTTATAGTGTTGTAGAGCCCCTACTTCCCTGCATCCAAACCCACATGGTGGTTACCTCTGTGAGAAGGGCCGCGTTTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATAATGGAACATATTCTATTATGGCTAACACTAAGAATAACCAACACCATGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14002747 203 +  15232693 ACTGGAGACTGAAGTATTCCGAAAATTAAGACTGAGGCCTTATAGTGTTGTAGAGCCCCTACTTCCCTGCATCCAAACCCACACGGTGGTTATCTCTGTGAGAAGGGCCACGTTTGGATTGATCTTGGCAAT-------------------------TCCTTAAATTGGGACTGTTATAATGAAACATGTTCTATTACGGCTAACACTGAGAATAACCAACACCATGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245629 221 +    446445 ACTAGGGACTGAAATATTCTGAAAATTAAGACTGAGGCCTTGTAGCATTGTAGAGCCTCTACTTCCCTGCATCCAAACCCACATGGCGATTACCTCGGTGAGAAGGGCCACGTTTGGATTGACCTTGGCAATTCCACCTTT-----TATCTTAATGCTCCTTAAATTGGGACTGTTATAATGAAATATGTTCTATTATGGCTAACACTGAGAATAACCAACACC--GG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433451 222 + 123392446 CCTGGGGCCTGAGGTACCCAGGAAATTAAGACTGAGACCTGGCAGTGTTATAGAGTACCTACTTCCCTGGATCC-AACCCACATTGTGGATACTTCTGTGAGGATAATCATGTCTGGATTGACCTTGGCAACTTGACCTTT-----TATCTTAATGCTCTTTCTATTGAGACTGTTATTATGGAACACATTCTATTGTGGTTGATACTGAGAATAACCAACATCATGG
i micMur3.chr6             I 13 C 0
s proCoq1.NW_012150019v1       79601 223 +   1371726 CCTGGGGCCTGAGGGACCCAGGAAATTAAGACTGAATCCTTGCAATGTTGTAGAGCACCTACTTCCCTGGATCCAAATCCACATTGTGGATACCTCTGTGAGGAGAATCATGTTTGGATCGACCTTGGCAACTTGACCTTT-----TATCTTAATGCTCCTTAAATCGAGATTGTTATCATGGAACATATTCTATTGTGGTTGATACTGAAAATAGCCAACACCAAGG
i proCoq1.NW_012150019v1   I 29 C 0
s otoGar3.GL873550          15313370 211 -  18854210 -ACTGGGCCAGAGGTATCCGGGAAATTAGCAATGATACCTTGTGGTG---------------CTCCCTGGGCCCAAACCCACACTGT-GATACTTCTGTGACAAGAGTCCCCTTTGGATGGACCTTGGCAACTCAACCTTTTGTAATATCTTAATGTTCCTTAAATTGAGACTGTTACTATGGGGCATATTCTGTTCCAGTTGTTACTAAGAATAACCAACACTAAGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34345655 205 +  94987271 CGTGGTGCCCAAGGCACCC--GAGATTGACACTGAGGCCTTGAAATGCTCTGGATC----GCTTATCCTCGTCCCAA----------GACTACGTCTTTGAGAAGGGGCATAGCTGGGTTGACCTTGA-AACTAGACCTT------TATCTAACCACTACTTCGACTAGGACTACTTTTGTGGGACATGGTCTGTTATGATTGACAGGGAGGATAACCAACAACAAGG
i mm10.chr17               C 0 I 893
s dasNov3.JH569424            467101 214 +    935526 ACTGGGGCCTGAGATACACAGGAAGCTGCGCCTGAGACCTAGTGGTGT-ATACATCACCCACAACCCTGGTTTCGCATCACC--CATGCATACCTCTATGAGAATTAATATGCTTGGATTGACCCTGGCA------CCCTT-----GATCTTAACTCTTCTTATATTGGGACCATCATTCTGAGACATAATATATTATGGTTGATATTGAGAATAACCAACACCAAGG
i dasNov3.JH569424         C 0 C 0
e canFam3.chr12             70363945   7 -  72498081 I

a score=111875.000000
s hg38.chr6_KI270758v1_alt     13235 7 +     76752 GAATAAT
s panTro5.chr6             142712999 7 - 175400573 GAATAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864603 7 - 173848474 GAATAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382353 7 +   2807050 GAATAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675282 7 - 122973662 GAATAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299658 7 - 172585720 GAATAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459973 7 + 170955103 GAATAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176189 7 +    407600 GAATAAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48657 7 +    463628 GAATAAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626810 7 +  71996105 GAATAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46984 7 -    115496 GAATAAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677376 7 -   1936607 GAATAAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618354 7 - 171630274 GAATAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176076 7 +   1154217 GAATAAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14002950 7 +  15232693 AAATAAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245850 7 +    446445 TAATAAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433673 7 + 123392446 GAATAAT
i micMur3.chr6             C 0 I 75
s proCoq1.NW_012150019v1       79824 7 +   1371726 GAATAAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313581 7 -  18854210 GAATAAT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            467315 7 +    935526 AAGTAAT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e canFam3.chr12             70363945 7 -  72498081 I

a score=840246.000000
s hg38.chr6_KI270758v1_alt     13242 78 +     76752 GAACATGAAAAGAGAAAGCTACACTGGGAGAGTATGCTGCCTCTGTGGAGTGTATCGATGAGTG-GGAGA-TT-T-TTTTTT
s panTro5.chr6             142713006 78 - 175400573 GAACATGAAAAGAGAAAGCTACACTTGGAGAGTATGCTGCCTCTGTGGAGTGTATCGATGAGTG-GGAGA-TT-T-TTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864610 78 - 173848474 GAACATGAAAAGAGAAAGCTACACTTGGAGAGTATGCTGCCTCTGTGGAGTGTATCGATGAGTG-GGAGA-TT-T-TTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382360 77 +   2807050 GAACATGAAAAAGGAAAGCTACACTTGGAGAGTATGCTGACTCTGTGGAGTGTGTCGATGAGTG-GGAGA--T-T-TTTTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675289 78 - 122973662 GAACATGAAAAAGGAAAGCTACACTTGGAGAGTATGCTGCCTCTGTGGAGTTTATCGATGAGCG-GGAGA-TT-T-TTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299665 78 - 172585720 GAACATGAAAAAAGAAAGCTACACTTGGAAAGTATGCTGCCTCTGTGGAGTGTGTCGATCAGTG-GGAGA-TT-A-TTTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138459980 78 + 170955103 GAACATGAAAAAAGAAAGCTACACTTGGAAAGTATGCTGCCTCTGTGGAGTGTGTCGATCAGTG-GGAGA-TT-A-TTTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176196 79 +    407600 GAACATGAAAAAAGAAAGCTACACTTGGAAAGTATGCTGCCTCTGTGGAGTGTGTCGATCAGTG-GGAGA-TT-ATTTTCTC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48664 78 +    463628 GAACATGAAAAAAGAACGCTACACTTGGAAAGTATGCTGCCTCTGTGGAGTGTGTCGATCAGTG-GGAGA-TT-T-TTTCTC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626817 79 +  71996105 GAACATGAAAAAAGAAAGCTACACTTGGAAAGTATGCTGCCTCTGTGGAGTGTGTCGATCAGTG-GGAGA-TTAT-TTTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       46991 78 -    115496 GAACATGAAAAAAGAAAGCTACACTTGGAAAGTATGCTGCCTCTGTGGAGTGTGTCGATCAGTG-GGAGA-TT-T-TTTCTC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677383 78 -   1936607 GAACGTGAAAAAAGAAAGCTACGCTTGGAAAGTATGCTGCCTCTGTGGAGTGTGTCGATCAGTG-GGAGA-TT-T-TTTCTC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618361 59 - 171630274 CCACATGACAAAGGAAAGCTA---------------CTGCCTCTGTGGA--GTGTTGATGAGTG-AGAGA----T-TTTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176083 79 +   1154217 CAACATTAAAAAGGAAAGCTACAATTGGAGAGTATGCTGCCTCTGTGGAGTGTGTTGATGAGTG-AGAGATTT-T-TTTCTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14002957 79 +  15232693 CAACATGAAAAAGGAAAGCTACAATTGGAGAGTATACTGCCTCTGTGGAGTGTGTCGATGAGTG-AGAGATCT-T-TTTCTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245857 79 +    446445 CAACATGAAAAAGGAAAGCTACAATTGGAGAGTATGCTGCCTCCGTGGAGTGTGTTGATGAGTG-AGAGACTT-T-TTTCTC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       79831 78 +   1371726 CAACTTGAACGAGAAAAGCTACACTTGGAGAGTATGCTACCTCCATGATGTGTGGAGATGATAG-GGAGA-TT-G-TTTCCC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313588 78 -  18854210 CAGCCTGAGTGAGAAAGGCTACAGCTGGAGAGTATGCAGCCTCCATGGTGTGTGTGGGTGAGAC-GGAGG-CT-G-TCTTTC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            467322 78 +    935526 CAACTTGAAAAAGGAGAATTACAATTGGAGA-TATGCAGCTTCTGTGGTGTGTGTAGAGAGGGGAGGAGA-TT-A-CTTCTC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4433680 75 + 123392446 I
e canFam3.chr12             70363945  7 -  72498081 I

a score=235738.000000
s hg38.chr6_KI270758v1_alt     13320 17 +     76752 TCCTTAGTCTTCAAAGA
s panTro5.chr6             142713084 17 - 175400573 TCCTTAGTCTTCAAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864688 17 - 173848474 TCCTTAGTCTTCAAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382437 17 +   2807050 CCCTTAGTCTTCAAAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675367 17 - 122973662 TCTCTAGTCTTCAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299743 17 - 172585720 TCCTTAGTCTTCAAAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460058 17 + 170955103 TCCTTAGTCTTCAAAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176275 17 +    407600 TCCTTAGTCTTCAAAGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48742 17 +    463628 TCCTTAGTCTTCAAAGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626896 17 +  71996105 TCCTTAGTCTTCAAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47069 17 -    115496 TCCTTAGTCTTCAAAGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677461 17 -   1936607 TCCTTAGTCTTCAAATA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618420 17 - 171630274 TCCTTAGCCTTTAAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176162 17 +   1154217 TCCTTAGCCTTTAAAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003036 14 +  15232693 TC---AGCCTTTAAAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245936 17 +    446445 TCCTTAGCCTTTAAAGA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433755 17 + 123392446 TCCTCAGTCTTCAAAGA
i micMur3.chr6             I 75 C 0
s proCoq1.NW_012150019v1       79909 17 +   1371726 TCTTTAGTCTTCAAAGA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313666 17 -  18854210 TCCTTAGTCTTCACAAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            467400 17 +    935526 TACTTAGTCTTCAGAGA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e canFam3.chr12             70363945  7 -  72498081 I

a score=78687.000000
s hg38.chr6_KI270758v1_alt     13337 5 +     76752 TAAGG
s panTro5.chr6             142713101 5 - 175400573 TAAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864705 5 - 173848474 TAAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382454 5 +   2807050 TAAGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675384 5 - 122973662 TAAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299760 5 - 172585720 TAAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460075 5 + 170955103 TAAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176292 5 +    407600 TAAGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48759 5 +    463628 TAAGG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626913 5 +  71996105 TAAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47086 5 -    115496 TAAGG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677478 5 -   1936607 TAAGG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618437 5 - 171630274 CAAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176179 5 +   1154217 TAAGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003050 5 +  15232693 TAAGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245953 5 +    446445 TAAGG
i aotNan1.NW_018508875v1   C 0 I 2
s micMur3.chr6               4433772 5 + 123392446 TAAGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       79926 5 +   1371726 TAAGG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313683 5 -  18854210 TAAGG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e canFam3.chr12             70363945 7 -  72498081 I
e dasNov3.JH569424            467417 0 +    935526 C

a score=6392.000000
s hg38.chr6_KI270758v1_alt     13342 1 +     76752 T
s panTro5.chr6             142713106 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864710 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382459 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675389 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299765 1 - 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460080 1 + 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176297 1 +    407600 T
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48764 1 +    463628 T
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626918 1 +  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47091 1 -    115496 T
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677483 1 -   1936607 T
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618442 1 - 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176184 1 +   1154217 T
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003055 1 +  15232693 C
i cebCap1.NW_016107339v1   C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4433777 0 + 123392446 C
e proCoq1.NW_012150019v1       79931 0 +   1371726 C
e aotNan1.NW_018508875v1      245958 2 +    446445 I
e canFam3.chr12             70363945 7 -  72498081 I
e otoGar3.GL873550          15313688 0 -  18854210 C
e dasNov3.JH569424            467417 0 +    935526 C

a score=38903.000000
s hg38.chr6_KI270758v1_alt     13343 5 +     76752 GAGAT
s panTro5.chr6             142713107 5 - 175400573 GAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864711 5 - 173848474 GAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382460 5 +   2807050 GAGAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675390 5 - 122973662 GAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299766 5 - 172585720 GAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460081 5 + 170955103 GAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176298 5 +    407600 GAGAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48765 5 +    463628 GAGAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626919 5 +  71996105 GAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47092 5 -    115496 GAGAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677484 5 -   1936607 GAGAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618443 5 - 171630274 GAGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176185 5 +   1154217 GAGAG
i saiBol1.JH378315         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4433777 0 + 123392446 C
e cebCap1.NW_016107339v1    14003056 0 +  15232693 C
e proCoq1.NW_012150019v1       79931 0 +   1371726 C
e aotNan1.NW_018508875v1      245958 2 +    446445 I
e canFam3.chr12             70363945 7 -  72498081 I
e otoGar3.GL873550          15313688 0 -  18854210 C
e dasNov3.JH569424            467417 0 +    935526 C

a score=1782515.000000
s hg38.chr6_KI270758v1_alt     13348 296 +     76752 ---------------------------------------------------------------------Attttgt-----tttgttttggtttgg-ttgtttgagacggagtcttgctct--atcgccaggctggagtgcagtggcaccatctcagctcactgcaacctccgcctcccgagttcaagcaatcctcctgcctcagcctcccgagtagctgggactacaggcgtgtgccaccatacccagctaattttttgtatttttagtagagac--ggggtttcaccatgttgcccaggacggtctcgatctcttgacctcatgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagcca
s panTro5.chr6             142713112 293 - 175400573 ---------------------------------------------------------------------Attttgt-----tttgttttggtttgg-ttgtttgagacggagtcttgctct--atcgccaggctggagtgcagtggcaccatctcagctcactgcaacctccgcctcccgggttcaagcaa---tcctgcctcagcctcccgagtagctgggactacaggcgtgtgccaccatacccagctaattttttgtatttttagtagagac--ggggtttcaccatgttgcccaggacggtctcgatctcttgacctcgtgatctgcccacctcggcctcccaaagtgctgggattacaggtgtgagcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140864716 293 - 173848474 ---------------------------------------------------------------------Attttgt-----tttgttttggtttgg-ttgtttgagacggagtcttgctct--atcgccaggctggagtgcagtggcaccatctcagctcactgcaacctccgcctcccgggttcaagcaa---tcctgcctcagcctcccgagtagctgggactacaggcgtgtgccaccatacccagctaattttttgtatttttagtagagac--ggggtttcaccatgttgcccaggacggtctcgatctcttgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382465 298 +   2807050 ---------------------------------------------------------------------ATTTTGT-----TTTGGTTTGGTTTGG-TGGtttgagacggagtcttgctct--atcgccaggctggagtgtagtggcgccatctcagctcactgcaacctccgcctcctgggttcaagcagtcctcctgcctcagcctcccgagtagctgggactacaggtgtgcgccaccatacccagctaattttttgtatttttagtagagatggggggtttcaccatgttgctcaagatggtctcgatctcttgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagcca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675395 296 - 122973662 ---------------------------------------------------------------------Attttgt-----tttgttttggtttgg-ttgtttgagacggagtcttgctct--atcactaggctggagtgcagtggcgccatctcagctcactgcaacctctgcctcccgggttcaagcgatcctcctgcctcagcctcccgagtagctgggactacaggcatgcgccaccacacccagctaattttttgtatttttagtagagac--ggggtttcaccatgttgcccaggatggtctcgatctcttgacctcgtgatccgcctgccttggcctcccaaagtgttgggattacaggcgtgagcca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139299771 290 - 172585720 ---------------------------------------------------------------------Attttgt-----tttgttttggtttggtttgttt------gagtcttgctct--gtcaccaggttggagtgcagtggcgtgatctcagctcactgcaacctccatctcccaggttcaagtgatcctcctgcctcagcctcctgagtggctgggactacaagcatgcgccaccacactcagctaattttttgta-ttttagtagagat--ggggtttcaccatattggccaggatggtctcgatctcttgacctcctgatccacccaccttggcctcccaaagtgctgggattacaggagtgagcca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460086 290 + 170955103 ---------------------------------------------------------------------ATtttgt-----tttggtttggtttggtttgttt------gagtcctgctct--gtcaccaggttggagtgcagtggcgtgatctcagctcactgcaacctccatctcccaggttcaagtgatcctcctgcctcagcctcctgagtggctgggactacaagcatgcgccaccacactcagctaattttttgta-ttttagtagagat--ggggtttcaccatattggccaggatggtctcgatctcttgacctcctgatccacccaccttggcctcccaaagtgctgggattacaggagtgagcca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176303 295 +    407600 ---------------------------------------------------------------------ATtttgttttggtttggtttggtttggtttgttt------gagtcttgctct--gtcaccaggttggagtgcagtggcgtgatctcagctcactgcaacctccacctcccaggttcaagtgatcctcctgcctcagcctcctgagtggctgggactacaagtatgcgccaccacactcagctaattttttgta-ttttagtagagac--ggggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccgcccacctcggcctccctaagtgctgggattacaggcatgatcca
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       48770 290 +    463628 ---------------------------------------------------------------------ATtttgt-----tttggtttggtttggtttgttt------gagtcttcctct--gtcaccaggttggagtgcagtggcgtgatctcagctcactgcaacctccacctcccaggttcaagtgatcctcctgcctcagcctcctgagtggctgggactacaagtatgcgccaccacactcagctaattttttgta-ttttagtagagac--ggggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccacccacctcggcctccctaagtgctgggattacaggcatgatcca
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39626924 296 +  71996105 ---------------------------------------------------------------------ATTTTGT-----TTTGGTTTGGTTTGGtttgtttgagacggagtcttgctct--gtcaccaggctggagtgcagtggcgtgatctcagctcactgcaacctccacctcccaagttcaagcgatcctcctgcctcagcctcctgagtggctgggactacaggcatgcgccaccacacccagctaattttttgta-ttttagtagagac--ggggtttcaccatgttggccaggatggtctcgatctcttgacctagtgatctgcccacctcggcctccctaagtgctgggattacaggcatgatcca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47097 290 -    115496 ---------------------------------------------------------------------ATtttgt-----tttggtttggtttggtttgttt------gagtcttgctct--gtcaccaggttggagtgcagtggcgtgatctcagctcactgcaacctccacctcccaggttcaagtgatcctcctgcctcagcctcctgagtggctgggactacaggcatgcgccaccacactcagctaattttttgta-ttttagtagagac--ggggtttcaccatgttggccaggatggtctcgatctcttaacctcatgatccgcccacctcggcctcgctaagtgctgggattacaggcatgatcca
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677489 295 -   1936607 ---------------------------------------------------------------------ATtttgttttggtttggtttggtttggtttgttt------gagtcttgctct--gtcaccaggttggagtgcagtggcatgatctcagctcactgcaacctccacctcccaggttcaagtgatcctcctgcctcagcctcctgagtggctgggactacaggcatgtgccaccacactcagctaattttttgta-ttttagtagagat--ggggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccgcccacctcggcctccctaagtgctcggattacaggcatgatcca
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            176190 367 +   1154217 ATTTTAATATTTGACTGTGTATTGATAAACCTAAGAATTTATTTAGAATCTGCATCTATGCTGAACtttttttttt-----ttttttttttttttttttttttgagacagagttttgctcttgtttcccaggctggagtgcaatggtacaatctcggctcaccgcaacctccgcctcctggattcaggcaattctcctgcctcagcctcctgagtagctgggattacaggtgtgcgccaccatgcccagctaa-tttttgtacttttagtagagac--ggggtttcactatgttgaccaggacggtctcgatctcttgacctcatgatccacccgcctcggcctcccaaagtgctgggattacaggcttgagcca
i saiBol1.JH378315         C 0 T 377
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4433777   0 + 123392446 C
e cebCap1.NW_016107339v1    14003056   0 +  15232693 C
e proCoq1.NW_012150019v1       79931   0 +   1371726 C
e aotNan1.NW_018508875v1      245958   2 +    446445 I
e calJac3.chr4             138618448   0 - 171630274 C
e canFam3.chr12             70363945   7 -  72498081 I
e otoGar3.GL873550          15313688   0 -  18854210 C
e dasNov3.JH569424            467417   0 +    935526 C

a score=51140.000000
s hg38.chr6_KI270758v1_alt     13644 11 +     76752 ccgtgcccagc
s panTro5.chr6             142713405 11 - 175400573 ccgtgcccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865009 11 - 173848474 ccgtgcccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382763 11 +   2807050 ccgtgcccggc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675691 11 - 122973662 ccgtgcccagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300061 11 - 172585720 ccgtgcccggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460376 11 + 170955103 ccgtgcccggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176598 11 +    407600 ctgtgcctggG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49060 11 +    463628 ccatgcctggG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627220 11 +  71996105 ccgtgcctggG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47387 11 -    115496 ccgtgcctggG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677784 11 -   1936607 ctgtgcctggG
i colAng1.NW_012115555v1   C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4433777  0 + 123392446 C
e cebCap1.NW_016107339v1    14003056  0 +  15232693 C
e proCoq1.NW_012150019v1       79931  0 +   1371726 C
e aotNan1.NW_018508875v1      245958  2 +    446445 I
e calJac3.chr4             138618448  0 - 171630274 C
e canFam3.chr12             70363945  7 -  72498081 I
e saiBol1.JH378315            176557 377 +   1154217 T
e otoGar3.GL873550          15313688  0 -  18854210 C
e dasNov3.JH569424            467417  0 +    935526 C

a score=7800.000000
s hg38.chr6_KI270758v1_alt     13655 1 +     76752 c
s panTro5.chr6             142713416 1 - 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865020 1 - 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382774 1 +   2807050 c
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675702 1 - 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300072 1 - 172585720 c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460387 1 + 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176609 1 +    407600 C
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49071 1 +    463628 C
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627231 1 +  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47398 1 -    115496 C
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677795 1 -   1936607 C
i colAng1.NW_012115555v1   C 0 C 0
s dasNov3.JH569424            467417 1 +    935526 C
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4433777 0 + 123392446 C
e cebCap1.NW_016107339v1    14003056 0 +  15232693 C
e proCoq1.NW_012150019v1       79931 0 +   1371726 C
e aotNan1.NW_018508875v1      245958 2 +    446445 I
e calJac3.chr4             138618448 0 - 171630274 C
e canFam3.chr12             70363945 7 -  72498081 I
e saiBol1.JH378315            176557 377 +   1154217 T
e otoGar3.GL873550          15313688 0 -  18854210 C

a score=20932.000000
s hg38.chr6_KI270758v1_alt     13656 4 +     76752 AAGA
s panTro5.chr6             142713417 4 - 175400573 AAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865021 4 - 173848474 AAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382775 4 +   2807050 AAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675703 4 - 122973662 AAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300073 4 - 172585720 AAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460388 4 + 170955103 AAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176610 4 +    407600 AAAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49072 4 +    463628 AAAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627232 4 +  71996105 AAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47399 4 -    115496 AAAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677796 4 -   1936607 AAAG
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            176180 4 +   1154217 AAGG
i saiBol1.JH378315         T 377 C 0
s dasNov3.JH569424            467418 4 +    935526 AATG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4433777 0 + 123392446 C
e cebCap1.NW_016107339v1    14003056 0 +  15232693 C
e proCoq1.NW_012150019v1       79931 0 +   1371726 C
e aotNan1.NW_018508875v1      245958 2 +    446445 I
e calJac3.chr4             138618448 0 - 171630274 C
e canFam3.chr12             70363945 7 -  72498081 I
e otoGar3.GL873550          15313688 0 -  18854210 C

a score=12376.000000
s hg38.chr6_KI270758v1_alt     13660 1 +     76752 T
s panTro5.chr6             142713421 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865025 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382779 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675707 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300077 1 - 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460392 1 + 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176614 1 +    407600 T
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49076 1 +    463628 T
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627236 1 +  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47403 1 -    115496 T
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677800 1 -   1936607 T
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            176184 1 +   1154217 T
i saiBol1.JH378315         C 0 C 0
s micMur3.chr6               4433777 1 + 123392446 T
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       79931 1 +   1371726 T
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313688 1 -  18854210 T
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            467422 1 +    935526 T
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e cebCap1.NW_016107339v1    14003056 0 +  15232693 C
e aotNan1.NW_018508875v1      245958 2 +    446445 I
e calJac3.chr4             138618448 0 - 171630274 C
e canFam3.chr12             70363945 7 -  72498081 I

a score=13073.000000
s hg38.chr6_KI270758v1_alt     13661 1 +     76752 G
s panTro5.chr6             142713422 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865026 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382780 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675708 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300078 1 - 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460393 1 + 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176615 1 +    407600 G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49077 1 +    463628 G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627237 1 +  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47404 1 -    115496 G
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677801 1 -   1936607 G
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            176185 1 +   1154217 G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003056 1 +  15232693 G
i cebCap1.NW_016107339v1   C 0 C 0
s micMur3.chr6               4433778 1 + 123392446 G
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       79932 1 +   1371726 G
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313689 1 -  18854210 G
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            467423 1 +    935526 A
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e aotNan1.NW_018508875v1      245958 2 +    446445 I
e calJac3.chr4             138618448 0 - 171630274 C
e canFam3.chr12             70363945 7 -  72498081 I

a score=63126.000000
s hg38.chr6_KI270758v1_alt     13662 4 +     76752 AGAG
s panTro5.chr6             142713423 4 - 175400573 AGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865027 4 - 173848474 AGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382781 4 +   2807050 AGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675709 4 - 122973662 AGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300079 4 - 172585720 AGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460394 4 + 170955103 AGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176616 4 +    407600 AGAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49078 4 +    463628 AGAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627238 4 +  71996105 AGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47405 4 -    115496 AGAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677802 4 -   1936607 AGAG
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            176186 4 +   1154217 AGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003057 4 +  15232693 AGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245960 4 +    446445 AGAG
i aotNan1.NW_018508875v1   I 2 C 0
s micMur3.chr6               4433779 4 + 123392446 AGAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       79933 4 +   1371726 AGAG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313690 4 -  18854210 AGAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            467424 4 +    935526 AGGG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e calJac3.chr4             138618448 0 - 171630274 C
e canFam3.chr12             70363945 7 -  72498081 I

a score=717947.000000
s hg38.chr6_KI270758v1_alt     13666 48 +     76752 ATTTTAATGTTT-GACTGTGTATTGATAAACCTAGGAATTTATTTACCG
s panTro5.chr6             142713427 48 - 175400573 ATTTTAATGTTT-GACTGTGTATTGATAAACCTAGGAATTTATTTACCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865031 48 - 173848474 ATTTTAATGTTT-GACTGTGTATTGATAAACCTAGGAATTTATTTACCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382785 48 +   2807050 ATTTTAATGTTT-GACTGTGTATTGATAAACCTAGGAATTTATTTACCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675713 48 - 122973662 ATTTTAATGTTT-GACTGTATATTGATAAACCTAGGAATTTATTTACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300083 49 - 172585720 ATTTTAATGTTTGGACTGTGTATTGATAAACCTTGGAATTTATTTACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460398 49 + 170955103 ATTTTAATGTTTGGACTGTGTATTGATAAACCTTGGAATTTATTTACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176620 48 +    407600 ATTTTAATGTTT-GACTGTGTATTGATAAACCTAGGAATTTATTTACCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49082 48 +    463628 ATTTTAATGTTT-GACTGTGTATTGATAAACCTAGGAATTTATTTACCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627242 48 +  71996105 ATTTTAATGTTT-GACTGTGTATTGATAAACCTAGGAATTTATTTACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47409 48 -    115496 ATTTTAATGTTT-GACTGTGTATTGATAAACCTTGGAATTTATTTACCA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677806 48 -   1936607 ATTTTAATGATT-GACTGTGTATTGATAAACCTAGGAATTTATTTACCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618448 48 - 171630274 ATTTTAATATTT-GACTGTGTATTGATAAACCTATGAATTTATTTAGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176190 48 +   1154217 ATTTTAATATTT-GACTGTGTATTGATAAACCTAAGAATTTATTTAGAA
i saiBol1.JH378315         C 0 I 566
s cebCap1.NW_016107339v1    14003061 48 +  15232693 ATTTTAATATTT-GACTGTGTATTGATAAACCTAGGAATTTATTTAGCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      245964 48 +    446445 ATTTTAATATTT-GACTGTATATTGATAAACCTAGGAATTTATTTAGCA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433783 48 + 123392446 ATCTTAATTTTT-GACTGTGTATTGATAAACCTAGGGATTTATTTAGCA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       79937 48 +   1371726 ATCTTAAACTTT-GACTGTGTATTGATAAATCTAGGGATTTATTTAGCA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313694 48 -  18854210 ATTTTAATGTTT-GACTGTATATTGATAAACCTAGGGATTTATTTATCA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            467428 48 +    935526 ATTTTAAGGTCT-GACTGTATATTGATAAACCTAGGGACGATTTTAACA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e canFam3.chr12             70363945  7 -  72498081 I

a score=331614.000000
s hg38.chr6_KI270758v1_alt     13714 24 +     76752 TTTGCATCTATGCAAACACACACA------
s panTro5.chr6             142713475 24 - 175400573 TTTGCATCTATGCAAACACACACA------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865079 24 - 173848474 TTTGCATCTATGCAAACACACACA------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382833 24 +   2807050 TTTGCATCTATGCAAACACACACA------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675761 24 - 122973662 TTTGCATCTGTGCAAACACACACA------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300132 24 - 172585720 TTTGCATCTATGCAAGCACACACA------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460447 24 + 170955103 TTTGCATCTATGCAAGCACACACA------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176668 24 +    407600 TTTGCATCTATGCAAACACACACA------
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49130 24 +    463628 TTTGCATCTATGCAAACACACACA------
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627290 24 +  71996105 TTTGTATCTATGCAAACACACACA------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47457 24 -    115496 TTTGCATCTATGCAAACACACACA------
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677854 24 -   1936607 TTTGCATCTATGCAAACACACACA------
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618496 24 - 171630274 TCTGCATCTAGGCAAACACACACA------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176804 24 +   1154217 TCTGCATCTACGCAAACACACACA------
i saiBol1.JH378315         I 566 C 0
s cebCap1.NW_016107339v1    14003109 24 +  15232693 TCTGCATCTATGCAAACACACACA------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246012 24 +    446445 TCTGCATCTAGACAAACACACACA------
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433831 24 + 123392446 TTTCAATCTGTGcacacacacaca------
i micMur3.chr6             C 0 I 66
s proCoq1.NW_012150019v1       79985 24 +   1371726 TTTGAATCTATGcacacacataca------
i proCoq1.NW_012150019v1   C 0 I 10
s otoGar3.GL873550          15313742 24 -  18854210 TTTGAATTTATGCACACATGCACA------
i otoGar3.GL873550         C 0 I 6
s dasNov3.JH569424            467476 30 +    935526 TTCACAGCTATGCACACTCTCATAGATGCA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e canFam3.chr12             70363945  7 -  72498081 I

a score=74637.000000
s hg38.chr6_KI270758v1_alt     13738 6 +     76752 AATATA
s panTro5.chr6             142713499 6 - 175400573 AATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865103 6 - 173848474 AATATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382857 6 +   2807050 AATATA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675785 6 - 122973662 AATATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300156 6 - 172585720 AATATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460471 6 + 170955103 AATATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176692 6 +    407600 AATATA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49154 6 +    463628 AATATA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627314 6 +  71996105 AATATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47481 6 -    115496 AATATA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677878 6 -   1936607 AATATA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618520 6 - 171630274 AATATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176828 6 +   1154217 AATATA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003133 6 +  15232693 AATATA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246036 6 +    446445 AATATA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       80019 6 +   1371726 caTGTT
i proCoq1.NW_012150019v1   I 10 C 0
s otoGar3.GL873550          15313772 6 -  18854210 AATGTT
i otoGar3.GL873550         I 6 C 0
s dasNov3.JH569424            467506 6 +    935526 AATGTA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4433855 66 + 123392446 I
e canFam3.chr12             70363945 7 -  72498081 I

a score=428279.000000
s hg38.chr6_KI270758v1_alt     13744 31 +     76752 -CTAGCTGCCTCTTCACAAACCAAGGGAAGAT
s panTro5.chr6             142713505 31 - 175400573 -CTAGCTGCCTCTTCACAAACCAAGGGAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865109 31 - 173848474 -CTAGCTGCCTCTTCACAAACCAAGGGAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382863 31 +   2807050 -CTAGCTGCCTCTTCACAAACCAGGGGAAGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675791 31 - 122973662 -CTAGCTGCCTCTTCACAAATCAAGGGAAGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300162 31 - 172585720 -CTAGCTGCCTCTTTACAAACCAAGGGAAGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460477 31 + 170955103 -CTAGCTGCCTCTTTACAAACCAAGGGAAGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176698 31 +    407600 -CTAGCTGCCTCTTTACAAACCAAGGGAAGAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49160 31 +    463628 -CTAGCTGCCTCTTTACAAACCAAGGGAAGAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627320 31 +  71996105 -CTAGCTGCCTCTTTACAAACCAAGGGAAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47487 31 -    115496 -CTAGCTGCCTCTTTACAAACCAAGGGAAGAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677884 31 -   1936607 -CTAGCTGCCTCTTTACAAACCAAGGGAAGAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618526 31 - 171630274 -CTAGCTGCCTCTTCACAAAAGAAGGAAAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176834 31 +   1154217 -CTAGCTGCCTCTTCACAAAACAAGGGAAGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003139 31 +  15232693 -CTAGCTGTCTCTTCACAAAACAAGGGAAGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246042 31 +    446445 -CTAGCTGCCTCTTCACAAAACAAGGAAAGAG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       80025 30 +   1371726 -CTAGCTACCCCTTTCCAAATCAAG-GAAGAA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313778 31 -  18854210 -TTACCTGCCCCTTTCCAAATCAAGAGAAGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70363952 30 -  72498081 -CTAGCTTCCTCTTC-CATCCCAAGGGAAGAG
i canFam3.chr12            I 7 C 0
s dasNov3.JH569424            467512 32 +    935526 TGTGGCTGCCCTTTTCCAACCCCAGGAAAGAA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4433855 66 + 123392446 I

a score=395068.000000
s hg38.chr6_KI270758v1_alt     13775 27 +     76752 CCTCTGTCTTTCTAGGTAAGTATCCCT
s panTro5.chr6             142713536 27 - 175400573 CCTCTGTCTTTCTAGGTAAGTATCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865140 27 - 173848474 CCTCTGTCTTTCTAGGTAAGTGTCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382894 27 +   2807050 CCTCTGTCTTTCCAGATAAGTATCCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675822 27 - 122973662 CCTCTGTCTTTCCAGGTAAGTATCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300193 27 - 172585720 CCTCTATCTTTCCAGGTAAGTATCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460508 27 + 170955103 CCTCTATCTTTCCAGGTAAGTATCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176729 27 +    407600 CCTCTATCTTTCCAGGTAAGAATCCCT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49191 27 +    463628 CCTCTATCTTTCCAGGTAAGAATCCCT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627351 27 +  71996105 CCTCTATCTTTCCAGGTAAGAATCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47518 27 -    115496 CCTCTATCTTTCCAGGTAAGAATCCCT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677915 27 -   1936607 CCTCTATCTTTCCAGGTAAGAATCCCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618557 27 - 171630274 GCTCTATCTTCCCAGGTAAGTATCCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176865 27 +   1154217 CCTCTATCTTTCCAGGTAAGTATCCCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003170 27 +  15232693 CCTCTATCTTTCCAGGTAAGTATCCCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246073 27 +    446445 TCTCTATCTTTCCAGGTAAGTATCCCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433921 27 + 123392446 CCTCTATCTTTCTAGGTGAGCATCTCC
i micMur3.chr6             I 66 C 0
s proCoq1.NW_012150019v1       80055 27 +   1371726 CCTCTATCTTTCCAGGTGGGCATCCCC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313809 26 -  18854210 CCTCTATCTTTCCAGGTAAGCA-CCCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70363982 27 -  72498081 CCTCTATTTTATCACATATGCATCTCC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            467544 23 +    935526 -ACTCATCTTTCCAG---AGTAGCCCT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I

a score=1638148.000000
s hg38.chr6_KI270758v1_alt     13802 112 +     76752 ATGTATGGCTCTTTTGGGGCAATAG-AAATCTACAATTGCCACTATGGGTATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGACACCTTCTGTGGGGGTCACG
s panTro5.chr6             142713563 112 - 175400573 ATGTATGGCTCTTTTGGGGCAATAG-AAATCTACCATTGACACTATGGGTATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGACACCTTCTGTGGGGGTCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865167 112 - 173848474 ATGTATGGCTCTTTTGGGGCAACAG-AAATCTACAATTGCCACTATGGGTATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGACACCTTCTGTGGGAGTCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2382921 112 +   2807050 ATGTATGGCTCTTTTGGGGCAATAG-AAATCTACAATTGCCACTATGGGTATGGGAGCTGGGTTATTA-CTTGGCCTATTTCAAGTCTACCTGACACCTTCTGTGGGGGTCACT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675849 112 - 122973662 ATGTATGGCTCTTTTGGGGTAATAG-AAATCTACAATTGCCACTATGGGTATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGACACCTTCTGTGGGGGTCACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300220 112 - 172585720 ATGTATGGCTCTTTTTGGGCAATAG-AAATCTACAATTGCCACTATGGGTATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGACACCTTCTGTGGGGGTCACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460535 112 + 170955103 ATGTATGGCTCTTTTTGGGCAATAG-AAATCTACAATTGCCACTATGGGTATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGACACCTTCTGTGGGGGTCACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176756 112 +    407600 ATGTATGGCTCTTTTTGGGCAATAG-AAATCTACAATTGCAACTATGGGTATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTAACTGACACCTTCTGTGGGGGTCACT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49218 112 +    463628 ATGTATGGCTCTTTTTGGGCAATAG-AAATCTACAATTGCCACTATGGGTATGGGAGCTGGGTTGTTA-CTTTGCTTATTTCAAGTCTAACTGACACCTTCTGTGGGAGTCACT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627378 112 +  71996105 ATGTATGGCTCTTTTTGGGCAATAG-AAATCTACAATTGCCACTATGGGTATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGACACCTTCTGTGGGGGTCACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47545 113 -    115496 ATGTATGGCTCTTTTTGGGCAATAGAAAATCTACAATTGCCACTATGGGTATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGACACCTTCTGTGGGGGTCACT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      677942 112 -   1936607 ATGTATGGCTCTTTTTGGGCAATAG-AAATCTACAATTGCCACTATGGGTATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACTTGACACCTTCTGTAGGGGTCACG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618584 112 - 171630274 ATGTGTGGCTTATTTTGGGCAATAG-AAATCTATAATTGCCACTATGGATATGGGAGCTGGGTTATTA-CTTCGCTTATTTCAAGTCTATCTGACACCTTCTGTGGGGGTCACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            176892 112 +   1154217 ATGGACGGCTATTTTTGGGCAATAA-AAATCTGTAATTGCCACTATGGATATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGACACCTTCTGTGGGAGTCACT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003197 112 +  15232693 ATGTATGGCTCTTTTTGGGAAATAG-AAATCTGTAATTGCCACTATGGATATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGACACCTTCTGTGGGGGTCACA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246100 112 +    446445 ATGTGTGGCTCTTTTGGGGCAATAG-AAATCTGTAATTGCCACTATGGATATGGGAGCTGGGTTATTA-CTTTGCTTATTTCAAGTCTACCTGGCACCTTCTGTGGGGGTCTCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4433948 110 + 123392446 ATACATGGCTCTTTCTGGGCAGTAG-AAACCTGTAATTGCCATTATGGGTCTGGGAGCCGGGTTATTA-TTTTGCTTCTTTCCGGTCTACCTGACACCCTCTGT--GGGTCACT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       80082 112 +   1371726 ATATATGGCTCTTTCTGGGCAGTAG-AAACCTATAATTGCCACTATGGGTCTGGGACCTAGGTTATTA-TTTTGCTTATTTTCGGTCTATCTGACACCTTCTGTGGGGGTCACT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15313835 113 -  18854210 ATATATGGCCCTTTCTGGGCAGTAG-AAACCTGTAATTGCCATTATGGGTCTGGGAGCTGCATTATAACTTTTGCTTATTTCCAGTCTACCTGACACCCCCTGTAGAGGTTATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70364009 111 -  72498081 ATTTGTGGCCCTTTCAAGGCAATAG-AAACATACAGTTTCTATCATGGGTCTTGGAACTGGATGATTA-TATTACTTATTTCCAGCGTA-CTGCCATCCTTTCTGGGGTTTAGT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e dasNov3.JH569424            467567   0 +    935526 C

a score=1880730.000000
s hg38.chr6_KI270758v1_alt     13914 131 +     76752 CTGGGTGAAGAATACTTTTCTACAGTACATCTTTACAACAGCACCAATG-TTGCTCTGGAGATGAGAGAGAATAATATCAGATTCCCCATTTCCTTACTTATTTTTCTACTCTCTTGGAAATATTACTAAGT-------
s panTro5.chr6             142713675 131 - 175400573 CTGGGTGAAGAATACTTTTCTACAGTACATCTTTACAACAGCACCAGTG-TTGCTCTGGAGATGAGAGAGAATAATATCAGATTCCCCATTTCCTTACTTATTTTTCTACTCTCTTGGAAATATTACTAAGT-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865279 131 - 173848474 CTGGGTGAAGAATACTTTTCTACAGTACATCTGTACAACAGCACCAATG-TTGCTCTGGAGATGAGAGAGAATAATATCAGATTCCCCATTTCCTTACTTATTTTTCTACTCTCTTGGAAATATTACTAAGT-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2383033 131 +   2807050 CTGGGTGAAGAATACTTTTCTACAGCACATCTTTACAACAGCACCAGTG-TTGCTCTGGACATCAGAGAGAATAATATCAGATTCCCCACTTCCTTACTTATTTTTCTACTCTCTTGGAAATATTACTAAGT-------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45675961 131 - 122973662 CTGGGTGGAGAATACTTTTCTACAGTACATCTTTACAACAGCACCAATG-TTGCTCTGGAGATGAGAGAGAATAATATCAGATTCCCCACTTCCTTACTTATTTTTCTACTGTCTTGGAAATATTACTAAGT-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300332 131 - 172585720 CTGGGTGAAGAATACTTTTCTACAGTACATCTTTACAATAGCACAAATG-TTGCTCTGGAGATGAAAGAGAGTAATATCAGATTTCCCACTTCCTTACTTATTTTTCTACTATCTTGGAAATATTACTAAGT-------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460647 131 + 170955103 CTGGGTGAAGAATACTTTTCTACAGTACATCTTTACAATAGCACAAATG-TTGCTCTGGAGATGAAAGAGAGTAACATCAGATTTCCCACTTCCTTACTTATTTTTCTACTATCTTGGAAATATTACTAAGT-------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176868 131 +    407600 CTGGGTGAAGAATACTTTTCTACAGTACGTCTTTACAATAGCACAAATG-TTGCTCTGGAGATGAAAGAGAGTAATGTCAGATTCCCCACTTCCTTACTTATTTTTCTACTATCTTGGAAATATTACTAAGT-------
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49330 131 +    463628 CTGGGTGAAGAATACTTTTCTACAGTACATCTTTACAATAGCACAAATG-TTGCTCTGGAGATGAAAGAGAGTAATATCAGATTCCCCACTTCCTTACTTATTTTTCTACTATCTTGGAAATATTACTAAGT-------
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627490 131 +  71996105 CTAGGTGAAGAATACTTTTCTACAGTACATCTTTACGATAGCACAAATG-TTGCTCTGGAGATGAAAGAGAGTAATATCAGATTCCCCACTTCCTTACTTATTTTTCTACTATCTTGGAAATATTACTAAGT-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47658 131 -    115496 CTGGGTGAAGAATACTTTTCTACGGTACGTCTTTACAATAGCACAAATG-TTGCTCTGGAGATGAAAAAGAGTAATATCAGATTCCCCACTTCCTTACTTATTTTTCTACTATCTTGGAAATATTACTAAGT-------
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      678054 131 -   1936607 CTGAGTGAAGAATACTTTTCTACAGTACGTCTTTACGATAGCACAAATG-TTGCCCTGGAGATGAAAGAGAGTAATATCAGATTCCCCACTTCCTTACTTATTTTTCTACTATCTTGGAAATATTACTAAGT-------
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618696 131 - 171630274 CTGGGTGAAGAATACTTTTCTACAATACATCTTTACAACAGCACAAATG-TTGCTCTGGAGATGAGAGAGAACAGTATCAGATTCCCCACTTCCTTACTTATTTTTCTACTGTCTTGGAAGCATTACCAAGT-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            177004 131 +   1154217 CTGGGTGAAGAACACTTTTCTACAATACATCTTGACAACAGCACAACTG-TTGCTCTGGAGATGAGAGAGAGCAACATCAGACTCCCCGCTTCCTTACTTATTTTTCTACTCTCTTAGAAATATTACCAAGT-------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003309 131 +  15232693 CTGGGTGAAGAATACTTTGCTACAATACGTCTTTACAACAGCACAAACG-TTGCTCTGGAGATGAGAGAGAACAGCATCAGATTCCCCAATTCCTTACTTATTTTTCTACTCTCTTGGAAACATTACCAAGT-------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246212 130 +    446445 CTGGGTGAAGAATACTTTTCTACAATACATCTTTACAACAGCACAAATG-TTGCTCTGGAGATGAGAGAGAACAACATCAGATTCCCCACTTCCTTGCTTATTTTTCTACTATCGTGGAAATATTACC-AGT-------
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4434058 131 + 123392446 CTGGGTGAAGAATACTTTTTCACAATACATCTTTACAGCAGCACAGATGTTTGCTCTGGGGATGGCAGAGAATAATGCCAAGTTCCCTA-TTCCTTATGCATTTTTCTACTCTCTTGAAAATATTACTAAGT-------
i micMur3.chr6             C 0 I 10
s proCoq1.NW_012150019v1       80194 132 +   1371726 CTGGGTGGAGAACACTTTTTCACAATACGTCTTTACAACAGCACAGATGTTTGCTCTGGGGATGGCAGAGAATGATACCAGGCTCCCTACTTCCTTATTCATTTTTCTACTCTCTTGAAAATACTACTAAAT-------
i proCoq1.NW_012150019v1   C 0 I 50
s otoGar3.GL873550          15313948  90 -  18854210 CTACATGAAGAATACCTTTTCATAATTCATCTTTACA------------------------------------------AGACTCCCCACTTCCTTATTCATTTTTCTACTCTCTAAAAAATATTACTAAGT-------
i otoGar3.GL873550         C 0 I 10
s canFam3.chr12             70364120 130 -  72498081 CTGGGTAAAGGTTACTTTTTCACAATACATCTTCATAGCAGTAAACAT--TTGCTTTGCAGATGGCAGAGAATAATAAAAGAATTTCCATATCTTTTTTCATTGTTCTACTCTTTTGAGAAAATCACTAAGT-------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            467567 137 +    935526 CTGGATGAAGAATGGTTGTTTATAATAC-TCTTCACACCAGCCTGAATGCTTGCTCTAGAGAAGGCAGAGGAAAACATCAGATT-CCCGTTTCCTTATTAATTTTTCTACTTTCTTGGAAATATCAAGAAACAGTGGCT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I

a score=425040.000000
s hg38.chr6_KI270758v1_alt     14045 45 +     76752 TAACATGA-TATAAGATCTGCTGTACCATGGA--------------GATGG-GAAGGCAGG
s panTro5.chr6             142713806 45 - 175400573 TAACATGA-TATAAGATCTGCTGTACCATGGA--------------GATGG-GAAGGCAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865410 45 - 173848474 TAACATGA-TATAAGATCTGCTGTACCATGGA--------------GATGG-GAAGGCAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2383164 45 +   2807050 TAACATGA-TATTAGATCTACTCTACTATGGA--------------GATGG-GAAGGCAGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45676092 45 - 122973662 TAACATGA-TATAAGATCTACTGTACCATGGA--------------GATGC-AAAGGCAGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300463 45 - 172585720 TAACATGA-TATAAGATCTACTGTACCATGGA--------------GATGG-GAAGGCAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460778 45 + 170955103 TAACATGA-TATAAGATCTACTGTACCATGGA--------------GATGG-GAAGGCAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      176999 45 +    407600 TAACATGA-TACAAGATCTACTGTACCATGGA--------------GATGG-GAAGGCAGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49461 45 +    463628 TAACATGA-TATAAGATCTACTGTACCATGGA--------------GATGG-GAAGGCAGG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627621 45 +  71996105 TAACATGA-TATAAGATCTACTGTACCATGGA--------------GATGG-GAAGGCAGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47789 45 -    115496 TGACATGA-TATAAGATCTCCTGTACCATGGA--------------GATGG-GAAGGCAGG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      678185 45 -   1936607 TAACATGA-TATAAGATCTACTGTACCATGGA--------------GATGG-GAAGGCAGG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618827 45 - 171630274 TAACATGA-TCTAAGGCCTACTGCAGCATGGA--------------GATGG-GACGGTAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            177135 45 +   1154217 TAACACGA-TCTAAGATCTACTGCAGCAAGGA--------------GATGG-GAAGGTAGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003440 36 +  15232693 TAACATGA-TCTAAGGTCTACTGCAGCATGGA--------------GATGG----------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246342 45 +    446445 TAACATGA-TCTAAGATCTACTGCAGCATGGA--------------GATGG-GAAGGTAGG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4434199 42 + 123392446 AAAGGCCA-TGTAAGATCTATTGTAGCACAGG--------------GTTGG-GGTGGG---
i micMur3.chr6             I 10 C 0
s otoGar3.GL873550          15314048 42 -  18854210 AAAGATTA-TGTAATATCTACTGTAGCACAGG--------------GTTGG-GGGTGG---
i otoGar3.GL873550         I 10 I 11
s canFam3.chr12             70364250 42 -  72498081 AGCTGTGA-TCATAGATC-ATAGATCCACTGA--------------AGTGGTGAAGGC---
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            467704 51 +    935526 TCATGTCATTAGAAAATCCACTGTAAGGTGGACTACCGCTGTGCCCTGTGG----------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e proCoq1.NW_012150019v1       80326 50 +   1371726 I

a score=343580.000000
s hg38.chr6_KI270758v1_alt     14090 27 +     76752 GAATGGCTATCACTGTCCCATGAGGCA--------------
s panTro5.chr6             142713851 27 - 175400573 GAATGGCTATCACTGTCCCATGAGGCA--------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865455 27 - 173848474 GAATGGCTATCACTGTCCCATGAGGCA--------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2383209 27 +   2807050 GAATGGCTATCACTGTCCCATGAGGCA--------------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45676137 27 - 122973662 GAATGGCTATCACTGTCCCATGAAGCA--------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300508 27 - 172585720 GAATGGCTATCACAGTCCCATGGGGCA--------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460823 27 + 170955103 GAATGGCTATCACAGTCCCATGGGGCA--------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      177044 27 +    407600 GAATGGCTATCACAGTCCCATGGGGCA--------------
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49506 27 +    463628 GAATGGCTATCACAGTCCCATGGGGCA--------------
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627666 27 +  71996105 GAATGGCTATCACAGTCCCATGGGGCA--------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47834 27 -    115496 GAATGGCTATCACAGTCCCATGGGGCA--------------
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      678230 27 -   1936607 GAATGGCTATCACAGTCCCATGGGGCA--------------
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618872 26 - 171630274 AAATGGCTA-CACTGTCCCAGGAGGCA--------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            177180 27 +   1154217 AAATGGCTATCACTGTCCCATGAGAAA--------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003476 25 +  15232693 --ACAGCTATCACTGTCCCATGAGGCA--------------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246387 27 +    446445 AAATGGCTATCACTGTCCCATGAGGCA--------------
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4434241 27 + 123392446 GGATGGCTAGCACTGTCCCAAGAGGCA--------------
i micMur3.chr6             C 0 I 195
s proCoq1.NW_012150019v1       80376 27 +   1371726 GGATGGCTAGCACTGTCCCAGGAGGCA--------------
i proCoq1.NW_012150019v1   I 50 I 14
s otoGar3.GL873550          15314101 27 -  18854210 CGATGGCTGTCACTGTCCTGAGGGCCA--------------
i otoGar3.GL873550         I 11 C 0
s canFam3.chr12             70364292 22 -  72498081 -----GCCATCCTTCTCCTAAGAGGAA--------------
i canFam3.chr12            C 0 I 14
s dasNov3.JH569424            467755 41 +    935526 AGCGGACTCTGGCTGTCCCCAGAGGGAGGAGATCCCGTGTA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I

a score=1964887.000000
s hg38.chr6_KI270758v1_alt     14117 180 +     76752 ACTCATATCAGCATGCCTTCCCTCCCCTTTTCCTGGGGTAAATTGTTGCTTTTTGATGACTTTTCCTTCTAGTAATCTTCAACACAATATATGTGCTCAATATATACCGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGATAAG-AACAGGGCTAATAAC-------------------TTTTTT
s panTro5.chr6             142713878 178 - 175400573 ACTCATATCAGCATGCCTTCCCTCCCCTTTTCCTGGGGTAAATTGTTGCTTTTTGATGACTTTTCCTTCTAGTAATCTTCAACACAATATATGTGCTCAATATATACCGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGATAAG-AACAGGGCTAATAAC---------------------TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865482 177 - 173848474 ACTCATATCAGCATGCCTTCCCTCCCCTTTTCCTGGGGTAAATTGTTGCTTTTTGATGACTTTTCCTTCTAGTAATCTTCAACACAATATATGTGCTCAATATATACCGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGATAAG-AACAGGGCTAATAAC----------------------TTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2383236 186 +   2807050 ACTCATATCAGCATGCCTTCCCTCCCCTTTTCCTGGGGTAAATTGTTGCTTTTTGATGACTTTTCCTTCTAGTAATCTTCAACACAATGTATGTGCTCAATATATACCGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGATAAG-AACAGGGCTAATAACTT-------------TTCTTTTTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45676164 184 - 122973662 ACTCATATCAGCATGCCTTCCCTCCCCTTTTCCTTGGGTAAATTGTTGCTTTTTGATGACTTTTCCTTCCAGTAATCTTCAACACAATATATGTGCTTAATATATACCGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGATAAG-AACAGGGCTAATAAA---------------TTTTCTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300535 193 - 172585720 ACTCATATCAGCATGCCTTCCCTGCCCTTTTCCTGAAGTAAATTGTTGTTTTTTGATGGCTTTTCCTTCTAGTAACCTTCAACACAATATAAGTGCTCGATATATACTGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGGTAAG-AACAGGGCTAATAAACtt------ttcttttttttttttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138460850 193 + 170955103 ACTCATATCAGCATGCCTTCCCTGCCCTTTTCCTGAAGTAAATTGTTGTTTTTTGATGGCTTTTCCTTCTAGTAACCTTCAACACAATATAAGTGCTCGATATATACTGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGGTAAG-AACAAGGCTAATAAACtt------ttcttttttttttttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      177071 195 +    407600 ACTCATATCAGCATGCCTTCCCTGCCCTTTTCCTGAAGTAAATTGTTGTTTTTTGATGGCTTTTCCTTCTAGAAACCTTCAACACAATATAAGTGCTCAATATATACTGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGGTAAG-AACAGGGCTAATAACttttc----tttttttttttttttt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49533 190 +    463628 ACTCATATCAGCATGCCTTCCCTGCCCCTTTCCTGAAGTAAATTGTTGTTTTTTGATGGCTTTTCCTTCTAGTAACCTTCAACACAATATAAGTGCTCAATATATACTGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGGTAAG-AACAGGGCTAATAAC---------ttttcttttttttttt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627693 199 +  71996105 ACTCATATCAGCATGCCTTCCCTGCCCTTTTCCTGGAGTAAATTGTTGTTTTTTGATGGCTTTTCCTTCTGGTAACCTTCAACACAACGTATGTGCTCAATATATACTGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGGTAAG-AACAGGGCTAATAACttttctttctttttttttttttttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       47861 189 -    115496 ACTCATATCAGCATGCCTTCCCTGCCCTTTTCCTGAAGTAAATTGTTGTTTTTTGATGGCTTTTCCTTCTAGTAACCTTCAACACAATATAAGTGCTCGATATATACTGACAGGATTTACACT-CCAAAAAATAACTACTGTATCATGTATTCAGGTAAG-AACAGGGCTAATAACTTTTC----------TTTTTTTTTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      678257 192 -   1936607 ACTCACATCAGCATGCCTTCCCTGCCCTTTTCCTGAAGTAAATTGTTGTTTTTTGATGGCTTTTCCTTCTAGTAACCTTCAACACAATATAAGTGCTCAATATATACTGAGAGGATTTACACT-CCAAAAAATAACTACTGTATCAGGTATTCAGGTAAG-AACAGGGCTAATAACtt-------ttcttttttttttttt
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138618898 182 - 171630274 ACTTTTATCCTCATGCTTTCCTTCCCCTTCTCCTTGGGTAAATCATTGCTTTTTCATGACTTCTCCTTCTAGTAATCTTCAACACAATTTA-GTGCTAAATCTATACTGAGAGAATTCGCACC-CCCAAAAATAACTACTGTATCACGTATTCGGATAAG-AACAGTGCTAATAGCTTC----------------TCTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            177207 177 +   1154217 ---CTTATCAACACGACTGCCTTCCCCTTTTCCTTGGGTAAATTGTTGCTCTTTCATGACTTTTCCTTCTAGTAATCTCCAACACAATTTA-GTGCTAAATGTATACTGAAAGAATTTACACT-CCAAAAAGTAACTACTGTGTCATGTATTCAGATAAG-AACAGTGCTAATAACT------------------TCTTTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003501 177 +  15232693 ATTTATATCAACATGCCTTCCTTCCCCTTTTCCTTGGGTGAATTGTTGCTTTTTCATGACTTTTCCTTCTAGTAATCTTTAACACAATTTT-GTGCTAAATATATACTGAAAGAATTCACACT-CCAAAAAGTAACTACTGTATCATGTATTCAGGTAAG-AACAGTGCTAATAACT---------------------TTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246414 181 +    446445 ATTTATATCAACTTGCCTTCCTTCCCCTTTTCCTTGGGGAAATGGTTGCTTTTTCATGACTTTTCCTTCTAGTAATCTTCAACACAATTTA-CTGCTAACTATACACTGAAAGAATTTACACT-CCAAAAAGTAACTACTGTATCATGTATTCCAATAAG-AACAATGCGAATAACTTC----------------TC-TTT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       80417 180 +   1371726 ACTCATATCAGCATGCCTGCACTCCCACCTCCCTCGGGTCAATTGCTGCTCTTTGGTGACTTTTCTTTCTAATCATCTTCAATACGGTGTCTGTGCTCAAAGTATGCTGTCAGGGTTTACATG-CCAAAAAATAACAACTGTACCATCTATTTAgctaag-gatagtgctaagaacttctca-------------------
i proCoq1.NW_012150019v1   I 14 I 4
s otoGar3.GL873550          15314128 173 -  18854210 --GTAAATTAA-----ATGCACTCCCACCTCCCTTGGGTTGATTGTTGCTTTTTGGTGACTTTTCTTTTCAATGATCTTCAACACAGCATCTGTGCTTAAAATATGCTGACAGAAACTATATGCCCCCCAAATAACAA-TGTATGATGTTTTTAGCTAAG-AACAGTGCTAAGAACTTCTCA-------------------
i otoGar3.GL873550         C 0 I 4
s canFam3.chr12             70364328 177 -  72498081 ATTGGTATAAGCATACCTGCCCT-TGCTCTTCCTTGGGTAGATTGTTGCT-TTTGGTAACTTCCTTTTCTGGTGATCTTCAATGCAATATCTGTGCTTAAAATATTCTGACAGGATTCACTTG-CCAAAAAAAA-------TATCATAtatttgtctaagaaacagttgcaagaacttctca-------------tattt-
i canFam3.chr12            I 14 C 0
s dasNov3.JH569424            467796 167 +    935526 ACTTCTACCAGCACTCCTGCC-GCCCCTCCACCTAGGGTAGGCAGTCGCTCTTTGGTGACCGTCCTTT-----------CAGTGCAATGTCTCTGCTCACAATAAGCTGGCAGGATTCACAAG-CCAAGCCATTACCAC-----CATATACTCAAccaag-aacagtacggagaatttctcataat---------------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4434268 195 + 123392446 I

a score=1669131.000000
s hg38.chr6_KI270758v1_alt     14297 116 +     76752 TTTTTCATTTAA-TTCTAGCAAAACTATGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAAGCCCAGAAATATAACTTGTTAATGCTTGCCAGAAAATA
s panTro5.chr6             142714056 116 - 175400573 TTTTTCATTTAA-TTCTAGCAAAACTATGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAAGCCCAGAAATATAACTTGTTAATGCTTGCCAGAAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865659 116 - 173848474 TTTTTCATTTAA-TTCTAGCAAAACTATGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAAGCCCAGAAGTATAACTTGTTAATGCTTGCCAGAAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2383422 116 +   2807050 TTTTTCATTTAA-TTCTAGCAAAACCATGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAAGCCCAGAAATATAACTTGTTAATGCTTGCCAGAAAATA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45676348 116 - 122973662 TTTTTCATTTAA-TTCTAGCAAAACTATGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAAGCCCAGAAATATAACTTGTTAATGCTTGCCAGAAAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300728 116 - 172585720 tctttCATTTAA-TTCTAGAAAAACTATGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAGGCCCAGAGATATAACTTGTTAATGCTTGCCAGAAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138461043 116 + 170955103 tctttcatttaa-ttctAGAAAAACTATGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAGGCCCAGAGATATAACTTGTTAATGCTTGCCAGAAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      177266 116 +    407600 tttttCATTTAA-TTCTAGAAAAACTACGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTGATTTT----------------------------------CCAGAAAGA------ATAAGTAAGGCCCAGAGATATAACTTGTTAATGCTTGCCAGAAAATA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49723 116 +    463628 tttttCATTTAA-TTCTAGAAAAACTACGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAGGCCCAGAGATATAACTTGTTAATGCTTGCCAGAAAATA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39627892 116 +  71996105 tttttCATTTAA-TTCTAGAAAAACTATGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAGGCCCAAAGATATAACTTGTTAATGCTTGCCAGAAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       48050 116 -    115496 TCTTTCATTTAA-TTCTAGAAAAACTATGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAGGCCCAGAGATATAACTTGTTAATACTTGCCAGAAAATA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      678449 116 -   1936607 tttttCATTTAA-TTCTAGAAAAACTATGTGTGGTTTTT------AGTTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------ATAATTAAGGCCCAGAGACATAACTTGTTAATGCCTGCCAGAAAATA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138619080 117 - 171630274 TTTATTATTTAATTTCTAGCAAAATTATGTGCAGTTTTT------AGTTTTTAATTGT---------------------------ATTAATTTT----------------------------------CCAGGAAGA------ATAATTAAAGCCCAGAGATATAGCCTGTCAATGCTTGCCGGGAAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            177384 105 +   1154217 TTTATTATTTAA-TTCTAGCAAAACTCTGTGCAGTTTTT------A-----------T---------------------------ATTAATTTT----------------------------------CCAGAAAGA------ATAATTAAAGCCCAGAGATGTAACTTGTCAGTGCTTGCCAGAAAATA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003678 115 +  15232693 TTTATTATTTAA-TTCTAGCAAAACTATGTGCAGTTTTT------AGTTTTTAATTTT---------------------------ATTAATTTT----------------------------------CCAGAAAGA------AT-ATTAAAGCCCAGAGATATAACTTGTTAATGCTTGCCAGAAAATA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246595 116 +    446445 TTTATTATTTAA-TTCTAGCAAAACTATGTGCAGTTTTT------GGGTTTTAATTTT---------------------------ATTAATTTT----------------------------------CCAGAAAGA------ATAATTAAAGCCCAGAGATATAACTTGTTAACGCTTGCCAGAAAATA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4434463 116 + 123392446 TTTTTCATTTAA-TTCTAACAGAATTATATGAGGTTTTT------AATTTTTAATTTT---------------------------ACTAATTTT----------------------------------CCAGAAAGA------AAAATTAAAGCCCAGAAATATAACTTGTTAATGCCTGTCCGAAAATA
i micMur3.chr6             I 195 I 54
s proCoq1.NW_012150019v1       80601 122 +   1371726 tttttcatttaa-ttctaacaaaattatgtgaggttttt------aatttttaatttt---------------------------actaatttt----------------------------------ccagaaagaaaaattaaaattaaagcccagagatgtAACTTGTTAATGCCTGTCCGATAATA
i proCoq1.NW_012150019v1   I 4 C 0
s otoGar3.GL873550          15314305 183 -  18854210 TTTTTCATTTAA-TTCTAACAAAATTATATGAGTTTTTTTTTTGCAGttttttttttttttctggccagggctgggtttgaatccactacctctgatatatggggccagcgccctattcctttgagccacagAAAGA------AAAATTAAAGCTCACAGATGTAGCTTGTTAATGCCTGTCAGAAAATA
i otoGar3.GL873550         I 4 C 0
s canFam3.chr12             70364505 108 -  72498081 tttctcatttaa-tccccacaaaatgatgtgagatttca------a-------aatct---------------------------actaatttt----------------------------------ccagaaaaa------gaaattaaagcccagagG-ATAGCTTGTTAATACCTCTCAGAAAAGA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            467963 112 +    935526 ttgtctctttca-tccccacaaaattatgtgaagttttc------aatgttttacttt---------------------------actaatttt----------------------------------acagaaaga------gagatgaaagtccaaagaggtaacttgttag----tgtgagaaagta
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I

a score=527096.000000
s hg38.chr6_KI270758v1_alt     14413 69 +     76752 -TTCTTCCT------CCCCCACCCCCACCCCCACCCCCAGTTTGGC-------TTGTAGC-AGGACCTTGCTATTCATCAATAC
s panTro5.chr6             142714172 75 - 175400573 -TTCTTCCTcccccacccccacccccacccccacccccaGTTTGGC-------TTGTAGC-AGGACCGTGCTATTCATCAATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865775 69 - 173848474 -TTCTTCCT------CCCCCACTCCCACCCCCACCCCCAGTTTGGC-------TTGTAGC-AGGACCGTGCTATTCATCAATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2383538 57 +   2807050 -TTCTTCCT------------------CCCCCAACCCCAGTTTGGC-------TTGTAGC-AGGACCGTGCTATTCATCAATAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45676464 57 - 122973662 -TTCTTCCT------------------CCCCCACCCCCAGTTTGGC-------TTGTAGA-AGGACCATGCTATTCATCAATAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300844 56 - 172585720 -TTCTTCCT------------------CCCCCA-CCCCAGTTTGGC-------TTGTAGC-AGGACTGTGCTATTCATCAACAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138461159 56 + 170955103 -TTCTTCCT------------------CCCCCA-CCCCAGTTTGGC-------TTGTAGC-AGGACTGTGCTATTCATCAACAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      177382 56 +    407600 -TTCTTCCT------------------CCCCCA-CCCCAGTTTGGC-------TTGTAGC-AGGACTGTGCTATTCATCAACAC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49839 56 +    463628 -TTCTTCCT------------------CCCCCA-CCCCAGTTTGGC-------TTGTAGC-AGGACTGTGCTATTCATCAACAC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39628008 56 +  71996105 -TTCTTCCT------------------CCCCCA-CCCCAGTTTGGC-------TTGTAGC-AGGACTGTGCTATTCATCAACAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       48166 56 -    115496 -TTCTTCCT------------------CCCCCA-CCCCAGTTTGGC-------TTGTAGC-AGGACTGTGCTATTCATCAACAC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      678565 56 -   1936607 -TTCTTCCT------------------CCCCCA-CCCCAGTCTGGC-------TTGTGGC-AGGACTGTGCTGTTCATCAACAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138619197 57 - 171630274 -TTCTTCCT------------------TCCCAACCCCCAGTGTGGC-------TTGTAGC-AGGACCGTGCTATTCAGCAATAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            177489 57 +   1154217 -TTCTTCCT------------------TCCTAACCCTCAGTTTGGC-------TTGTAGC-AGGACCGTGCTATTCATCAATAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003793 57 +  15232693 -TTCTTCCT------------------TCCCAAACCTCAGTGTGGC-------TTGTAGC-AGGACGGTGCTATTGATCAACAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246711 57 +    446445 -TTCTTCCT------------------CCCCAACCCCCAGTTTGGC-------TTGTAGC-AGGACCGTGCTATTCATCAATAC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       80723 54 +   1371726 ---ATGCCC------------------CC--------AAGTTTGCCTTATATTTAATATC-GAGTCAGTGGCAATAATCAATTT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15314488 54 -  18854210 -TTCTACCT------------------CCCC---CTAAAGTTTGTC-------TAATATA-AAGTTGGTGACAATAATCAACTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70364613 50 -  72498081 ---------------------------TTTTCACTTCAAGTCAGCC-------TTATCTCAAAGTCAATGGTACTAATCCATAC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            468075 62 +    935526 ctcccgcct------ggc---------cctgcgcgccaggtttggc-------ttataccaaagtcagtgccattcaccaatat
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4434579 54 + 123392446 I

a score=9879768.000000
s hg38.chr6_KI270758v1_alt     14482 700 +     76752 ACAACTCAGTTTTGACCCTCTAAACCAAATTTGACTTACTTCAGTTTGTGGTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCGAGAC-CACATAATACCTGTCACACTATTCTTTCACTCCACACATTATCTTCCAAATGTCCATAGGTCTTTTCTCCAATGCT-TCGTAGTCTATCGT-CCCAGA--TTTCATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGCGCTCATCAGCACAGCTATGATGAAAAATCCTAGCACAGGGACTCCACTTATGGCCATTTTCTTCTTGGGCGCTCTGTTGGGA-GTCAGTAGAGCTCGGGAGTGAGGCAGAACAGACAAGAAT----AAAAGAAAAGAGAATGTGGGGTGTAATAGAGTCTGAC--CATTAAAATGCAAATCAATTACTCTTTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAGGGGAAGGGTTCTTG-CAAAGGGTCCAGGACACAAGAT---AC----TCCGTTCATTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTT-----AAACAAACAGGACAACAACA------------ACAAC-A-AATCAAGTATTTAAGACTGTTAGTCAATCACGGACAGACTCTTTAACCCC------AATCTGACTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGAATCAATGGAAACA-CCTAAAGTGAGAGCTAAATAC
s panTro5.chr6             142714247 704 - 175400573 ACAACTCAGTTTTGATCCTCTAAACCAAATTTGACTTACTTCAGTTTGTGGTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCTAGAC-CACATAATACCTGTCACACTATTCTTTCACTCCACACATTATCTTCCAAATGTCCATAGGTCTTTTCTCCAATGCT-TCGTAGTCTATCGT-CCCAGA--TTTCATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGCGCTCATCAGCACAGCTATGATGAAAAATCCTAGCACAGGGACTCCACTTACGGCCATTTTCTTCTTGGGCGCTCTGTTGGGA-GTCAGTAGAGCTCGGGAGTGAGGCAGAACAGACAAGAAT----AAAAGAAAAGAGAATGTGGGGTGTAATAGAGTCTGAC--CATTAAAATGCAAATCAATTACTCATTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAGGGGAAGGGTTCTTG-CAAAGGGTCCAGGACACAAGAT---AC----TCCGTTCATTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTTAAT-CAAACAAACAGGACAACAACG------------ACAAC-A-AATCAAGTATTTAAGACTGTTAGTCAATCACGGACAGACTCTTTAACCCC------AATCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGAATCAATGGAAACA-ACTAAAGTGAGAGCTAAATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140865844 704 - 173848474 ACAACTCAGTTTTGATCCTCTAAACCAAATTTGACTTACTTCAGTTTGTGGTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCTAGAC-CACATAATACCTGTCACACTATTCTTTCACTCCACACATTATCTTCCAAATGTCCATAGGTCTTTTCTCCAATGCT-TCGTAGTCTATCGT-CCCAGA--TTTCATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGCGCTCATCAGCACAGCTATGATGAAAAATCCTAGCACAGGGACTCCACTTACGGCCATTTTCTTCTTGGGCGCTCTGTTGGGA-GTCAGTAGAGCTCGGGAGTGAGGCAGAACAGACAAGAAT----AAAAGAAAAGAGAATGTGGGGTGTAATAGAGTCTGAC--CATTAAAATGCAAATCAATTACTCATTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAGGGGAAGGGTTCTTG-CAAAGGGTCCGGGACACAAGAT---AC----TCCGTTCATTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTTAAT-CAAACAAACAGGACAACAACG------------ACAAC-A-AATCAAGTATTTAAGACTGTTAGTCAATCACGGACAGACTCTTTAACCCC------AATCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGAATCAATGGAAACA-ACTAAAGTGAGAGCTAAATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2383595 704 +   2807050 ACAACTCAGTTTTGATCCTCTAAACCAAGTTTGACTTACTTCAGTTTGTGGCGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCTAGAC-CACATAATAGCTGTCACACTTTTCTTTCACTCCACACATTATCTTCCAAATGTCCATAGGTCATTTCTCCAATGCT-TCGTAGTCTATTGT-CCCAGA--TTTCATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGTTCTCATCAGCACAGCTATGATGAAAAATCCTAGCACGGGGACTCCACTTACGGCCATTTTCTTCTTGGGTGCTCTGTTGGGA-GTCAGTAGAGCTCAGGAGTGAGGCAGAACAGACAAGAAT----AAAAGAAAAGAGAATGTGGGGTGTAATAGAGTCTGAC--CATTAAAATGCAAATCAATTACTTATTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAGGGGAAGGGTTCTTG-CAAAGGGTCCAGGACACAAGAT---AC----TCAGTTCATTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTTAAT-CAAACAAACAGGACAACAACA------------ACAAC-A-AATCAAGTATTTAAGACTGTTAGTCAATAACGGACAGACTCTTTAATCCC------AATCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGAATCAATGGAAACA-CCTAAAGTGAGAGCTAAATAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45676521 699 - 122973662 ACAACTCAGTTTTGATCCTCTAAACCAAATTTGACTTACTTCAGTTTGTGGTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCTAGAC-CACATAATACCTGTCACACTTTTCTTTCACTCCACACATTatattccaaatgtccataggtcatttctccaatgct-tcgtagtctattgt-ccCAGA--TTTCATTCCCTCAGCACCTACCTTTGATAGCCCGTGATTCCTGAGCTCTCATCAGCACAGCTATGATGAAAAATCCTAGCACGGGGACTCCACTTACGGCCATTTTCGTCTTGTAGAACTTTTTGGGA-GTCAGTAGAGCTCGGGATTGAGGCAGAACAGACAAGAAT----AAAAGAAAAGAGAATGTGGGGTGTAATAGAGTCTG-C--CATTAAAATGCAAATAAATTATTCATTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAGGGGAAGGGTTCTTG-CAAAGGGTCCAGGACACAAGAT---AC----TCAGTTCATTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTT-----AAACAAACAGGACAACAACG------------ACAAC-A-AATCAAGTATTTAAGACTGTCAGTCAATCACGGACAGACTCTTTAATCCC------AATCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAACAGAATCAATGGAAACA-CCTAAAGTGAGAGCTAAATAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139300900 701 - 172585720 ACAACTGGGTTTTGATCCTCTAAACCAAATTTGACTTAATTCAATTTGTGTTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCTAGAC-TACATAATACCTGTCACACTTTTCTTTCACTCCACACATTATCTTCCAAATGTCCATAGGTCATTTCTCCAATGCT-TCATAGTCTATTGT-CCCAGG--TTTTATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGCGCTCATCAGCATAGCTATGATGAAAAATCCTAGCACGGGGACTCCACTTACGGCCATTTTCTTCTTGGGTGCTCTGTTGGGA-GTCAGTAGAGCTCAGGGGTGAGGCAGAACAGACAAGAAT----TAAAGAAAAGAGAATGTGGGGTGTAACAGAGTCTGAC--TATTAAAATGCAAATCAATTACGCATTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAAGGGAAGGGTTCTTG-CAAAGGGTCCAGGATGCAAGAT---AC----TCAGTTCGTTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTTCAT-CAAACAAACAGGACAACA---------------ACAAC-A-GATCAAGTATTTAAGAATGTTGGTCAATCACGGACAGACTCTTTAATCCC------AGTCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGGATCAATGGAAACA-CCTAAAGTGAGAGCTAAATAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138461215 701 + 170955103 ACAACTGGGTTTTGATCCTCTAAACCAAATTTGACTTAATTCAATTTGTGTTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCTAGAC-TACATAATACCTGTCACACTTTTCTTTCACTCCACACATTATCTTCCAAATGTCCATAGGTCATTTCTCCAATGCT-TCATAGTCTATTGT-CCCAGG--TTTTATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGCGCTCATCAGCACAGCTATGATGAAAAATCCTAGCACGGGGACTCCACTTATGGCCATTTTCCTCTTGGGTGCTCTGTTGGGA-GTCAGTAGAGCTCAGGAGTGAGGCAGAACAGACAAGAAT----TAAAGAAAAGAGAATGTGGGGTGTAATAGAGTCTGAC--TATTAAAATGCAAATCAATTACGCATTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAAGGGAAGGGTTCTTG-CAAAGGGTCCAGGACGCAAGAT---AC----TCAGTTCATTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTTCAT-CAAACAAACAGGACAACA---------------ACAAC-A-GATCAAGTATTTAAGAATGTTGGTCAATCACGGACAGACTCTTTAATCCC------AGTCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGAATCAATGGAAACA-CCTAAAGTGAGAGCTAAATAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      177438 701 +    407600 ACAACTCAGTTTTGATCCTCTAAACAAAATTTGACTTAATTCAATTTGTATTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCTAGAC-TACATAATACCTGTCACACTTTTCTTTCACTCCACACATTATCTTCCAAATGTCCATAGGTCATTTCTCCAATGCT-TCATAGTCTATTGT-CCCAGA--TTTTATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGCGCTCATCAGCATAGCTATGATGAAAAATCCTAGCACGGGGACTCCACTTACGGCCATTTTCTTCTTGGGTGCTCTGTTGGGA-GTCAGTAGAGCTCAGGGGTGAGGCAGAACAGACAAGAAT----TAAAGAAAAGAGAATGTGGGGTGTAACAGAGTCTGAC--TATTAAAATGCAAATCAATTACGCATTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAAGGGAAGGGTTCTTG-CAAAGGGTCCAGGATGCAAGAT---AC----TCAGTTCGTTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTTCAT-CAAACAAACAGGACAACA---------------ACAAC-A-GATCAAGTATTTAAGAATGTTGGTCAATCACGGACAGACTCTTTAATCCC------AGTCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGGATCAATGGAAACA-CCTAAAGTGAGAGCTAAATAC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       49895 701 +    463628 ACAACTCAGTTTTGATCCTCTAAACCAAATTTGACTTAATTCAATTTGTATTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCTAGAC-TACATAATACCTGTCACACTTTTCTTTCACGCCACACATTATCTTCCAAATGTCCATAGGTCATTTCTCCAATGCT-TCATAGTCTCTTGT-CCCAGA--TTTTATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGCGTTCATCAGCATAGCTATGATGAAAAATCCTAGCACGGGGACTCCACTTACGGCCATTTTCTTCTTGGGTGCTCTGTTGGGA-GTCAGTAGAGCTCAGGGGTGAGGCAGAACAGACAAGAAT----TAAAGAAAAGAGAATGTGGGGTGTAATAGAGTCTGAC--TATTAAAATGCAAATCAATTACGCATTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAAGGGAAGGGTTCTTG-CAAAGGGTCCAGGACGCAAGAT---AC----TCAGTTCATTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTTCAT-CAAACAAACAGGACAACA---------------ACAAC-A-GATCAAGCATTTAAGAATGTTGGTCAATCACGGACAGACTCTTTAATCCC------AGTCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGAATCAATGGAAACA-CCTAAAGTGAGAGCTAAATAC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39628064 697 +  71996105 ACAACTCAGTTTTGATCCTCTAAACCAAATTTGACTTAATTCAATTTGTGTTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCTAGAC-TACATAATACCTGTCACACTTTTCTTTCACTCCACACATTATATTCCAAATGTCCATAGGTCATTTCTCCAATGCT-TCATAGTCTATTGT-CCCAGA--TTTTATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGCGCTCATCAGCACAGCTATGATGAAAAATCCTAGCACGGGGACTCCACTTACGGCCATTTTCTTCTTGGGTGCTCT----GGA-GTCAGTAGAGCTCAGGGGTGAGGCAGAACAGACAAGAAT----TAAAGAAAAGAGAATGTGGGGTGTAATAGAGTCTGAC--TATTAAAATGCAAATCAATTACGCATTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAAGGGAAGGGTTCTTG-CAAAGGGTCCAGGACGCAAGAT---AC----TCAGTTCATTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTTCAT-CAAACAAATAGGACAACA---------------ACAAC-A-GATCAAGTATTTAAGAATGTTGGTCAATCACGGACAGACTCTTTAATCCC------AGTCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGAATCAATGCAAACA-TCTACAGTGAGAGCTAAATAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       48222 701 -    115496 ACAACTCGGTTTTGATCCTCTAAACCAAATTTGACTTAATTCAATTTGTGTTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GTCTAGAC-TACATAATACCTGTCACACTTTTCTTTCACTCCACACATTATCTTCCAAATGTCCATAGGTCATTTCTCCAATGCT-TCATAGTCTATTGT-CCCAGG--TTTTATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGCGCTCATCAGCACAGCTATGATGAAAAATCCTACCACGGGGACTCCACTTACGGCCATTTTCTTCTTGGGTGCTCTGTTGGGA-GTCAGTAGAGCTCAGGGGTGAGGCAGAACAGACAAGAAT----TAAAGAAAAGAGAATGTGGGGTGTAATAGAGTCTGAC--TATTAAAATGCAAATCAATTACGCATTGGCCAATCAGAAAAATATTTTGAGATGACGCATCTGTTGCTAAGGGAAGGGTTCTTG-CAAAGGGTCCAGGACGCAAGAT---AC----TCAGTTCATTGGATAAAGAA------------------------------------------------------------GTAAAGTTCTTCAT-CAAACAAGCAGGACAACA---------------ACAAC-A-GATCAAGTATTTAAGAATGTTGGTCAATCACGGACAGACTCTTTAATCCC------AGTCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGAATCAATGGAAACA-CCTAAAGTGAGAGCTAAATAC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      678621 698 -   1936607 ACAACTCGGTTTTGATCCTCTAAACCAAATTTGACTTACTTCAATTTGTGTTGAGGGAAGAACTCCACCAAACCACAATTTGTT-ATACTTTCT-GGCTAGAC-TACATAATACCTGTCACACTTTTCTTCCACTCCACACATTATCTTCCAAATGTCCATAGGTCATTTCTCCAGTGCT-TCATAGTCTGTTGT-CCCAGA--TTTTATTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGCGCTCATCAGCACAGCTATGATGAAAAATCCTAGCGCGGGGACTCCACTTACGGCCATTTTCTTCTTGGGTGCTCTGTTAGGA-GTCAGTAGAGCTCAGGGGTGAGGCAGAACAGACAAGAAT----TAAAGAAAAGAGAATGTGGGGTGT---AGAGTCTGAC--TATTAAAATGCAAATCAATTATGCATTGGCCAATCAGAAAAATATTTCGAGATGACGCATCTGTTGCTAAGGGAAGGGTTCTTG-CAAAGGGTCCAGGATGCAAGAT---AC----TCAGTTCATTGGATGAAGAA------------------------------------------------------------GTAAAGTTCTTCAT-CAAACAAACAGGACAACA---------------ACAAT-A-GATCAAGTATTTAAGAATGTTGGTCAATCACGGACAGATTCTTTAATCCC------AGTCTGAGTTCTAGACAGGGATATACCTGAAGCACATTAGTGAGAATAGAATCAATGGAAACA-CCTAAAGTGAGAGCTAAATAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138619254 689 - 171630274 ACAACTCAGTTTTGTTCTTCTGAACCAAATTTGACTTACTTCAATTTGTGGTGAGGGAAGAACTCCACCAAACCACAATTTATT-ATACTTTCT-GTTTAGAC-CACATCATACCTGTCCCACTTTTCTTTCACTCCCCAGATTATCTTGCAAATGTCCACAGGCCATTTCTCCAATGCT-TCATAGACTATTGT-CCCAGA--TTTTACTCCCTCAGCACCTACCTTTGATGGCCCATGATTCCTGAGGGCTCATCAGCACAATCATGAGGAAAAATCCTAGCACCAAGACTCCACTTACAGCCATTTTCTTCTTGGGTGCTCTGTTGGGA-GTCAGTAGAGCTCAGGAGTGAGACAGGAC----AAGAAT----AAAAGAAAAGAGATTGTGGGCTTTAAGAGAGTCTGAT--GATTAAAATGCAAATCAATTAAGCATTGGCCAATAAGAAAACTATTTTGAGATGACACATCTGTTGCTAGGGGAAGAGTTCTTG-CAAAGGGTCCAGGACACAAGAC---AT----TCACCTCATTGGATAAAT-----------------------------------------------------------------AAGTTCTT-----AAACAAGCAG---AACAACA------------ACAAT-A-AATCAAGTATTTAAGGATGTTGATCAATCACTGACAGATTCATTCATCCC------AACCAGAGTTCTAGAAAGGGGTATACCTGAAGCACATTAGTGAGAATATAATCAATGGAAACACCCTAAAGTGAGAGTTAATCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            177546 696 +   1154217 ACAACTCAGTTTTGTTCTTTTAAACCAAATTTGACTTACTTCAATTGGTGGTGAGGGAAGAACTCCATCAAACCACAATGTATT-ATATTTTCT-GTTTAGAC-CACATCATACCTGTCACACTTTTCTTTCACTCCCCAGATTATCTTGCAAATGTCCACAGGCCATTTCTCCAATGCT-TCATAGTCTATTGT-CCCAGA--TTTTCCTCCCTCAGCACCTACCTTTGATAGCCCATGATTCCTGAGGGCTCATCAGCACAATCATGAGGAAAAATCCTAGCACCGAGACTCCACTTACAGCCATTTTCTTCTTGAGTGCTCTGTTGGGA-GTCAGTAGACCTCAGGAGTGAGACAGAACAGAGAAGAAT----AAAAGAAAAGAGATTGTGGGCTTTAATAGAGTCTGAT--GATTAAAATGCAAATCAATTAAGCTTTGGCCAATCAGGAAACTACTTTGAGATGACACATCTGTTGCTAGGGGAAGAGTTCTTG-CAAAGGGTCCAGGACACAAGAC---AT----TTACCTCATTGGATAAAG-----------------------------------------------------------------AAGTTCTT-----AAACAAGCAGAACAACAACA------------ACAAT-A-AATCAAGTACTTAAAAATGTTGATCAATCACTGACAGATTCATTCATCCC------AATCAGAGTTCTAGAAAGGGATATACCTGAAGCACATTAGTGAGAATATAATCAATGGAAACACCCTAAAGTGAGAGCTAAACAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14003850 696 +  15232693 ACAACTCAGTTTTGTTCTTCTAAACCAAATTTGACTTACTTCAATTTGTGGTGAGGGAAGAACTCCACCAAACCACAATTTATT-ATATTTTCT-GTTTAGAC-CACATCATACCTGTCACACTTTTCTGTCACTCCCCAGATTATCTTGCAAATATCCACAGGCCATTTCTCCAATGCT-TCATAGTCTATTGT-CCCAGA--TTTTACTCCCTCAGGACCTACCTTTGATAGCCCGTGATTCCTGAGGGCTCATCAGCACAATCATGAGGAAAAATCCTAGCACCGAGACTCCACTTACAGCCATTTTCTTCTTGGGTGCTCTGTTGGGA-GTCAGTAGAGCTCAGGAGTGAGATAGAACGTAGAAGAAT----AAAAGAAAAGAGATTGTGGGCTTTAATAGAGTCTGAT--GATTAAAATGCAAATCAATTAAGCATTGGCCAATCAGAAAACTATTTTGAGATGACACATCTGTTGCTAGGGGAAGAGTTCTTG-CGAAGGGTCCAGAACACAAGAC---AT----TCGCCTCATTGGATAAAG-----------------------------------------------------------------AAGTTCTT-----AAACAAGCAGAACAACAACA------------ACAAT-A-AATCAAGTATTTAAAAATGTTGATCAATCACTGACAGATTCATTCATCCC------AATCAGAGTTCTAGAAAGGGATATACCTGAAGCACATTGGTGAGAATATAATCAATGGAAACACCCTAAAGTGAGAACTAAACAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      246768 694 +    446445 ACAACTCAGTTTTGTTCTTCTAAACCAAATCTGACTTACTTCAATTTGTGGTGAGGGAAGAACTCCACCAAACCACAATGTATT-ATACTTTCT-GTTTAGAC-CGCATCATACCTGTCACACTTTTCTTTCACTCCCCAGATTATCTTGCAAATGTCCACAGGCCGTTTCCCCAATGCT-TC--AGTCTATTGT-CCCAGA--TTTTACGCCCTCAGCACCTACCTTTGATAGCCCATGATTCTTGAGGACTCATCAGCACAATCATGAGGAAAATTCCTAGCACCGAGACTCCACTTACAGCCATTTTCTTCTTGGGTGCTCTGTTGGGA-GTCAGTAGAGCTCAGGAGTGAGACAGAACAGAGAAGAAT----AAAAGAAAAGAGATTGTGGGCTTTAATAGAGTCTGAT--GATTAAAATGCAAATCCATTAAGCATTGGCCAATCAGAAAACTATTTTGAGATGACACATCTGTTGCTAGGGGAAGAGTTCTTG-CAAAGGGTCCAGGACATAAGAC---AT----TCACCTCATTGGATAAAG-----------------------------------------------------------------AAGTTCTT-----AAACAAGCAGAACAACAACA------------ACAAT-A-AATCAAGTATTTAAGAATGTTGATCAATCACTGACAGATTCATTCATCCC------AATCAGAGTTCTAGAAAGGGATATACCTGAAGCACATTAGTGAGAATATAATCAGTGGAAACACCCTAAAGTGAGAGCTAAGCAC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4434633 714 + 123392446 ACAGCTCAGTTTTGTTCCTCCAAACTAAATTTGACTTACTTCAGTTTGCAGTGAGGGAAGAACTCCTCCAAACTACAATTTATT-ACACCTTCAAACTTAGACACACATAATGCCTGTTTCACTTTTCTTTCACTCCAGAGA-TGTCTTGCAAATGTTTTCAGTTCATTTCTCAAAGGCT-TCATAGTCTCTCAGCCCCAGT--TTGGATTCTCCCAGCACCTACCTTTGATAGCCCATGATTCCTGAGGGTTCATCAGGACAGCCATGATGAGAAATCCTAGCACAGGGACTCCACTCATGGCCATTTTCTTTTTGGGTGCTTTGATGGGG-ATCGGTAGAGCTCAGGAGTGAGGCAGAACAAATAAGAAT----AAAAGAAAAGAGAATGTGGGGTGAGATAGAGTCTGACATGATTAAAATTCAAATCAGTCAAGCTTCAGCCAATCAGAAAAATCTTTTGAGATGACACATCTGTTGCTAGGGGCAGGGCTCTTC-TAAACTATCCAGGACAGGAGAT---ACTCTCTCATTTCATTAGAGTAAAAA------------------------------------------------------------GTAAAGTTCTTAAT-CAaacaattagaacaacaaca------------acaacaa-aatcaaGCTTTTGAGAAAGCTGGTCAATCACTCACAGACTCTTCCATCCC------AATCCAAGTTCTAGAAAGGGATATTCCTAAAGTACACCAGTGAGGCTAGAATCAGCGGGAACGCCCTAAAGTGAGAGCTAAATAC
i micMur3.chr6             I 54 I 135
s proCoq1.NW_012150019v1       80777 727 +   1371726 ACAGCTCAGTTTTGTTCCTCCAAACTAAATTTAACTTACTTCAGTTTGCAGTGAGGGAAGCACTCCTCCAAACTACAATTTATT-ATACTTTCAAACTTACACACACATGATGCCTGTCGCACTTTTCTTTCACTCCAGAGATTGTCTTGCAAATGTTTTCAGTTCATTTCTCAAAAGCT-TCATAGTCTATCATCCCCAGA--TTGGATTCTCCCAGCACCTACCTTTGATAGCCCAGGATTCCTGAGGGCTCATCAGGACAGCCATGATGAGAAATCCTAGAATAGGGACTCCACTTACGGCCATTTTCTTCTTGGGTGCTTTGATGGGG-GTTAGTAGAGCTCAGGAGTGAGGCAGAATAAATAAGAAT----GAAAGGAAAGAGAATGTGGGGTGTGATAGAGTCTGACATGATTAAAATTCAAATCAGTCAAGCTTCAGCCAATCAGAAAAATCTTTTGAGATGACACCTCTGTTGCTAGGGGAAGAGCTCTTC-TAAACTATCCAGGACAGAAGAT---ACTCTCTTAGTTCATTAGATTAAAAA------------------------------------------------------------GTAAAGTTCTTAAT-CAAACAAATAGAACAACAACAAAAAAAAACCAGACCAAAA-AATCAAGCTTTTGAGAATGCTGGTCAATCACTCACAGACTCTTCTATCCC------AATCCAAGTTCTAGAAAGGGATATACCTGAAGTACATTAGTGAGGATAGAATCAGCGGAAACGCCCTAAAGTGAGAGCTGAATAC
i proCoq1.NW_012150019v1   C 0 I 124
s otoGar3.GL873550          15314542 657 -  18854210 ACAGCTCAGTTTTGTTCCTCTAAACTGAATTTGACTTACTTCATTTTGCAGTGAGAGAA------CTCTAAACTGCAACTTATT-ATGCTTTCCAACTTAGACACACATCATAACTGTCCCACTTTTCTTTTACTTCCAAGAATGTCTTGCAAATGCTTTCAGTTC-TTTCTCCAATGCT-TCATAGTCTATGGTCCCCAGT--ATTGATTCTCTCAGCACTTACCTTTGATAGCCCAGGATTCCTGAGGGCTCATCAGGACAGCCATGATGAAAAATCCTAGCACAGAAAATCCACTAACAGCCATTTTCTTCTTGGGTGCTTTGATGAGG-GTCAGTACAGCTCAGGAGAGAGGCAGAGAAGTTAAGAAT---------ATAAGAGAATGTGGGGTGTGATAGAGTCTGGCATGATTAAAATTCAAATCAGTCAAGCTCCAGCCAATCAGAAAAATCTTATGAGATGACACATCTGTTGCTAGGGGTAGGGTTCTTG-CAAAAGGTCTAGGACAGAAGGT---AC--------------AGATGAAA----------------------------------------------------------------TAAGTTCGTAA-----------------------------------AC----A-AATCAAGTCTTCGAGATTTCTAATCAGTCAGTCACAGA--CTTCCATCCC------AATCCACGTTCTAGAAAGAGATATACCTGAAGTACATTTGTGAGGACAGAATCAATGGAAATGCCCTAAAGTGAGAGCTAAATAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70364663 759 -  72498081 -CATT----TTTTGTTCCTCTCAACTAAATGTGACTGACTTCAATTTATA---AGATCAGAACTCCTCCAAACTACAATTTTTTAATACTTTCAGATTTAGAC-CACACGATGCCTGCCACACTTTTCCTTCACTTCAAAGACAGTCTTGCAAATATTTACAATTTATCTCTCCAATGCTCTCAGAATTTCTATC-CCAAGT--TTTGTTTCTCTCAGCACTTACCTTTGACAGCCCATGATTCCTGAGGACCCATCAGGAAAGCCATGATGAAAAATCCTAGCACTGGGACTCCACTTATGGTCATTTTCTTCT---GTGATTTGTTGGGAGGTCAGTAGAGCTAAAGAGTAGGGTATAACTGACACGGATTTAAAAAAAAAGAGAGAATGTATGGTATGATAGAGTTTGAC-TGATTGAAATTTAAATAAGTTGAGCTGAAGCCAATCAGAAAAAC-TTTTGAGATGATACATCTGTTGCTAAGGGAAGAGCTCTTGTCAAAGGGTCAGGTAAACAAGTA---AA----GCTCTTaataaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaaaagaaaagaaaagaaaagaaaagaaaagaaaaagaaaaaacacctcatacatataatca-aataaaaata------------gcaaa-ataaacaaatgttcaagaatca----caTTCACCCATAGACTGTTTCTTCCT------AATCCAAGTTCTAGAAAGGGATGTACTTGAAGCACATTAGTGAGAATAAAATCAATGGAAACA-CCCTACATGGCAGTTAGTGAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            468137 662 +    935526 acAATTCAGCTTTGTTGTTCTAAAATAAATTTAACTAACTTAATCTTGTGATGTAGGTAGAACTCCTCCAAAATACAATTTGTC-ACGCTTGCT-----------------------------------TTTGCTCCAAATATTGTCTTGCAAATGTCCACGGTTCGTTTCTC-ACTGCT-C------------T-CCTAGGACACTGATTTTCACAGCACCTACCTTTGATAGCCCTTGTTTCCTGAGCGCTCATCAGCACAGCCGCGAGGAAAACTCCTAGCACCCCGACTCCACGTTGGGCCATTTTCTTCTTGGGGGCTTTA-TGAGG-GTCGGTATGGCTCGCCAGCGAGGCAGTACAAATGGAAAT----AAAAGAAAAGAGATTGTGAGGTGTGACGGAGTCTGGCTTGGTTAAAATTCAGGAAGATTGAACTGCAGCCAATCAGAAAAAAGCTTTGAGATGACTTACCTGTTGCTAAGGGCAGGGCTCATG-TAAAGGGTCCAAGAGAGGAGGATCGAC----TTAGTTCATT----AAAGAG------------------------------------------------------------ATATAGTGCTTAAT-CGAACAAACATGTGAACAAA-------------ATAGA-A-AATCAAGTTTTTGAGAATGCCAGGCAATC----ACAGACTCTTCCATCCCCCAATAAGCCCTAACCCGAGACAGGGATTGGCCAGAAGCTCGTTAGTAAGAATAAAATCATCAAAAATGTCCTAAAGTGAGAGCTCAGGAC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I

a score=235615.000000
s hg38.chr6_KI270758v1_alt     15182 19 +     76752 AGATCATATGTCTGTGCAA
s panTro5.chr6             142714951 19 - 175400573 AGATCATATGTCTGTGCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866548 19 - 173848474 AGATCATATGTCTGTGCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384299 19 +   2807050 AGATCATATATCTGTGCCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677220 19 - 122973662 AGATCATACGTCTGTGCCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139301601 19 - 172585720 AGATCATATGTCTGTGCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138461916 19 + 170955103 AGATCATATGTCTGTGCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178139 19 +    407600 AGATCATATGTCTGTGCCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       50596 19 +    463628 AGATCATATGTCTGTGCCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39628761 19 +  71996105 AGATCATATGTCTGTGCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       48923 19 -    115496 AGATCATATGTCTGTGCCA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679319 19 -   1936607 AGATCATATGTCTGTGCCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138619943 19 - 171630274 AGTTCATATGTCTGTGCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178242 19 +   1154217 AGTTCATATGTCTGTGCCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004546 19 +  15232693 AGTTCATATGTCTGTGCCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247462 19 +    446445 AGTTCATATGTCTGTGCCA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15315199 19 -  18854210 TGATCAAACCTGTGTGACG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70365422 19 -  72498081 AGATTATTCTTCTGTGCTG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            468799 19 +    935526 AGATCATGCTTCTGTGCTC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34345860 893 +  94987271 I
e micMur3.chr6               4435347 135 + 123392446 I
e proCoq1.NW_012150019v1       81504 124 +   1371726 I

a score=1630566.000000
s hg38.chr6_KI270758v1_alt     15201 136 +     76752 TGACAGTTGGAGAGTTTGCGT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGATTGTCTGAATTTTGGCAGTACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCATGCT------------TC--TTGGA
s panTro5.chr6             142714970 136 - 175400573 TGACAGCTGGAGAGTTTGCGT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGATTGTCTGAATTTTGGCAGTACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCATGCT------------TC--TTGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866567 136 - 173848474 TGACAGCTGGAGAGTTTGCGT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGATTGTCTGAATTTTGGCAGTACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCATGCT------------TC--TTGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384318 136 +   2807050 TGACAGCTGAAGAGTTTGCAT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGAATGTCTGAATTTTGGCAGTACTGAG-GGCATAGCTTCACTAAAGAAGCTC-------TTTCATTCT------------TC--TTGGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677239 136 - 122973662 TGACAGCTGGAGAGTTTGTGT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCGTGGAGATTGTCTGAATTTTGGCAGTACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCATGCT------------TC--TTGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139301620 136 - 172585720 TGACAGCTGGAGAGTTGGCAT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGAATGTCTGAATTTTGGCAGTACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCATGTT------------TC--TTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138461935 136 + 170955103 TGACAGCTGGAGAGTTGGCAT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGAATGTCTGAATTTTGGCAGTACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCACGTT------------TC--TTGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178158 136 +    407600 TGACAGCTGGAGAGTTGGCAT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGAATGTCTGAATTTTGGCAGTACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCATGTT------------TC--TTGGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       50615 136 +    463628 TGACAGCTGGAGAGTTGGCAT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGAATGTCTGAATTTTGGCAGCACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCATGTT------------TC--TTGGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39628780 136 +  71996105 TGACAGCTGGAGAGTTGGCAT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGAATGTCTGAATTTTGGCAGTACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCATGTT------------TC--TTGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       48942 136 -    115496 TGACAGCTGGAGAGTTGGCAT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGAATGTCTGAATTTTGGCAGTACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCATGTT------------TC--TTGGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679338 136 -   1936607 TGACAGCTAGAGAGTTGGCAT--AAGGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCATGGAGAATGTCTGAATTTTGGCAGTACTGAG-GACATAGCTTCACTAAAGAAGCTC-------TTTCATGTT------------TC--TTGGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138619962 137 - 171630274 TGACAGCTAGAGAGTGTGTGT--AATGGACAATAAATTACCC-AAATAGATGGTAAATTGTCAGACCATGGAGAATGTCTGAATTTTGGCAGTATTGAGTGACATAGCTTCACTAAAGAAGCTC-------TTTCATGCT------------TC--TTGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178261 135 +   1154217 TGACAGCTGGAGAGTGTGTAT--AACAGACAATAAATTACCC-AGATAGAAGGT--ATTGTCAGGCCGTGGAGAATGTCTGAATATTGGCAGTATTCAGTGACATGGCTTCACTAAAGAAGCTC-------TTTCATGCT------------TC--TTGGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004565 137 +  15232693 TGACAGCTGCAGAGTGTGTGT--AACGGACTATAAATTACCC-AAATAGAAGGTAAATTGTCTGGCTGTGGGGAATGTCTGAATTTTGGCAGTATTGAGTGACATAGCTTCACTAAAGAAGCTC-------TTTCATGCT------------TC--TTGGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247481 137 +    446445 TGACAGCTGGAGAGTGTGTGA--AATGGACAATAAATTACCC-AAATAGAAGGTAAATTGTCAGGCCGTGGAGAATGTCTGAATTTTGGCAGTATTGAGTGACATAGCTTCACTAAAGAAGCTC-------TTTCATGCT------------TC--TTGGA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15315218  91 -  18854210 TGACAGCTGGGAAGTTTACTG--AAGGGACAAAAAATCATCT-AAAGAGAAGGTAGA----CAGGCCATGGAG------------------------------------------AAGAAGCCC-------CTTATTGCT------------TC--ATGAT
i otoGar3.GL873550         C 0 I 8
s mm10.chr17                34346753 140 +  94987271 TGAAGGCTGGGAAGACTGCTTTCAAGGGACATTGAATTATCT-AAAGAGAAACGGAACAAGCAGGTGATGGAGAATG-CCGGATTCTGGT----------AACAGAATGTCATTCAGGGATCTC-------CTTATTGCTGGATGCATCTCCTT--TTGCA
i mm10.chr17               I 893 I 2
s canFam3.chr12             70365441 144 -  72498081 TGACAGCTGGGGAGTTTGTTT--AAGGGACAACAAAGCATCTGAGAAAGAAGGTAGGTTGTCATGCTATGGAGAATGCCTGATTCTTGGCAGTAGTGGGTGACAGAGCTTCACTTAAGTAACTTCAGG-AGCTTTTTGCT------------TC--AGGAT
i canFam3.chr12            C 0 I 11
s dasNov3.JH569424            468818 131 +    935526 TGAGAGCTTGAAAGTTTGATT--AAAAGACAACAAATTGTCT-AAAGAGAATGTAAACTGCCAGGCCAT---------------CCTGGTGGTACCGGATGTCAAAATTTCACTAAAGAAGCTGCTGATTGTTTTATGCC------------TCAACTGGA
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4435347 135 + 123392446 I
e proCoq1.NW_012150019v1       81504 124 +   1371726 I

a score=148526.000000
s hg38.chr6_KI270758v1_alt     15337 13 +     76752 --GTCCTAGACTTCA
s panTro5.chr6             142715106 13 - 175400573 --GTCCTAGACTTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866703 13 - 173848474 --GTCCTAGACTTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384454 13 +   2807050 --GTCCTAGACTTCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677375 13 - 122973662 --GTCCTAGACTTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139301756 13 - 172585720 --GTCATCGACTTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462071 13 + 170955103 --GTCATCGACTTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178294 13 +    407600 --GTCATCGACTTCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       50751 13 +    463628 --GTCATCGACTTCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39628916 13 +  71996105 --GTCATCGACTTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49078 13 -    115496 --GTCATCAACTTCA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679474 13 -   1936607 --GTCATCGACTTCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620099 13 - 171630274 --GTCCTGGAATTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178396 13 +   1154217 --GTCCTAGAATTCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004702 13 +  15232693 --GTCCTAGAATTCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247618 13 +    446445 --GTCCTAGAATTCA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       81628 13 +   1371726 --GTCCTGGACCCCA
i proCoq1.NW_012150019v1   I 124 C 0
s otoGar3.GL873550          15315317 13 -  18854210 --GTCCTAGACCCCA
i otoGar3.GL873550         I 8 C 0
s mm10.chr17                34346895 13 +  94987271 --GGGCTAGACACCA
i mm10.chr17               I 2 C 0
s canFam3.chr12             70365596 13 -  72498081 --ACTCTAGACTCCC
i canFam3.chr12            I 11 C 0
s dasNov3.JH569424            468949 15 +    935526 GTTTCCTAGACCCAA
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4435347 135 + 123392446 I

a score=653449.000000
s hg38.chr6_KI270758v1_alt     15350 43 +     76752 AGATGATCAACTCAGGCCAAG--A--GCTT-GGGATGGCTGGCATTGT
s panTro5.chr6             142715119 43 - 175400573 AGATGATCAACTCAGGCCAAG--A--GCTT-GGGATGGCTGGCATTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866716 45 - 173848474 AGATGATCAACTCAGGCCAAG--AGCGCTT-GGGATGGCTGGCATTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384467 43 +   2807050 AGATGATCAACTCAGGCCAAG--A--GCTT-GGGATGGCTGGCATTGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677388 42 - 122973662 AGATGATCAACTCAGGCCAAG-----GCTT-GGGATGGCTGGCATTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139301769 43 - 172585720 AGATGACCAACTCAGGCCAAG--A--GCTT-GGGTTGGCTGCCATTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462084 43 + 170955103 AGATGACCAACTCAGGCCAAG--A--CCTT-GGGTTGGCTGCCATTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178307 43 +    407600 AGATGACCAACTCAGGCCAAG--A--GCTT-GGGTTGGCTGCCATTGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       50764 43 +    463628 AGATGACCAACTCAGGCCAAG--A--GCTT-GGGTTGGCTGCCATTGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39628929 43 +  71996105 AGATGACCAACTCAGGCCAAG--A--GCTT-GGGTTGGCTGCCATTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49091 43 -    115496 AGATGACCAACTCAGGCCAAG--A--GCTT-GGGTTGGCTGCCATTGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679487 43 -   1936607 AGATGACCAACTCAGGCCAAG--A--GCTT-GGGTTGGCTGCCATTGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620112 44 - 171630274 AGATGATCAACTCAGGCCAAG--A--GCTTGGGGATGGCTGGCATTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178409 43 +   1154217 AGATGATCAACTCAGGCCAAG--A--GCTT-GCGATGGCTGGCATTGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004715 43 +  15232693 AGATGATCAACTCAGGCCAAG--A--GCTT-GGGATGGCTGGCATTGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247631 43 +    446445 AGATGATCAACTCAGGCCAAG--A--GCTT-GGGATGGCTGGCATTGT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4435482 43 + 123392446 AGATGACCAACTCGGCCCGAG--A--GCTT-AGGGTGGCTGGCATTGT
i micMur3.chr6             I 135 I 79
s proCoq1.NW_012150019v1       81641 43 +   1371726 AGATGACCAACTCGGCCCAAG--A--GCTT-GGGATCGCTGGCATTGT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15315330 43 -  18854210 AGATGACCAACTGAGCCCCAG--A--GGTT-GGGGTTGCTGGCATTGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34346908 42 +  94987271 ACATGGTCAGTTCAGCCCAAG--G--TTCC-AGGGCCACTGGAAAAT-
i mm10.chr17               C 0 C 0
s canFam3.chr12             70365609 45 -  72498081 AGATGGCCAACTCAGCCCAACTCA--GCTA-GGCATCCCTGGCACTGT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            468964 43 +    935526 AGATGGTCAACTCAGCCAAAG--A--GCAT-GGCAAGCCCGTCCCTGT
i dasNov3.JH569424         C 0 C 0

a score=965842.000000
s hg38.chr6_KI270758v1_alt     15393 82 +     76752 ATCTCATTTAGAGAAAATGAGAGGAGAAACTCTGAGGTTCAACACTCTCAACACTGGAGAAGGATGAAAGGCTGTATCTTGA
s panTro5.chr6             142715162 82 - 175400573 ATCTCATTTAGAGAAAATGAGAGGAGAAACTCTGAGGTTCAACACTCTCAACACTGGAGAAGGATGGAAGGCTGTATCTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866761 82 - 173848474 ATCTCATTTAGAGAAAATGAGAGGAGAAACTCTGAGGTTCAACACTCTCAACACTGGAGAAGGATGGAAGGCTGTATCTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384510 82 +   2807050 GCCTCATTTAGAGAAAATGAGAGGAGAAACTCTGAGGTTCAACACTCTCAACACTGGAGAAGGATGGAAGGCTATATCTTGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677430 82 - 122973662 GTCTCATTTAGAGAAAATCAGAGAAGAAACTCTGAGGTTCAACACTCTCAACACTGGAGAAGGATGGAAGGCTATATCTTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139301812 82 - 172585720 GCCTCATTTACAGAAAATCAGAGGATAAACTCTTAGGTTCCACAGTCTCAACACTGGAGAAGGATGGAAGGCTATATCTTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462127 82 + 170955103 GCCTCATTTACAGAAAATCAGAGGATAAACTCTTAGGTTCAACAGTCTCAACACTGGAGAAGGATGGAAGGCTATATCTTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178350 82 +    407600 GCCTCATTTACAGAAAATCAGAGGATAAACTCTTAGGTTCCACAGTCTCAACACTGGAGAAGGATGGAAGGCTATATCTTGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       50807 82 +    463628 GCCTCATTTACAGAAAATCAGACGATAAACTCTTAGGTTCAACAGTCTCAACACTGGAGAAGGATGGAAGGCTATATCTTGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39628972 82 +  71996105 GCCTCATTTAGAGAAAATCAGAGGATAAACTCTTAGGTTCAACAGTCTCAACACTGGAGAAGGATGGAAGGCTATATCTTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49134 82 -    115496 GCCTCATTTACAGAAAATCAGAGGATAAACTCTTAGATTCAACAGTCTCAACACTGGAGAAGGATGGGAGGCTATATCTTGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679530 80 -   1936607 GCCTCATTTACAGGAAATCAG--GATAAACTCTTAGGTTCAACAGTCTCAACACTGCAGAAGGATGGAAAGCTATATCTTGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620156 82 - 171630274 GCCTCATTTAGAGAAAATCAAAGGAGAAACTCCGAGGTTCAACACTGTCAACACTGGAGAAGGATGGGAAGCTGTATCTTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178452 82 +   1154217 GCCTCATTTAGAGAAAATCAAAGGAGAAACTCCGAGGTTCAACACTCTCAACACTGGAGAAGGACGGAAAGTTGTATCTTGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004758 82 +  15232693 GCCTCATTTAGAGAAAATCAAAGGAGAAACTCCGAGGTTCAACACTCTCAACACTGGAGAAGGATGGAAAGCTATATCTTGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247674 82 +    446445 GCCTCATTTAGAGAAAATCAAAGGAGAAACTCCGAGGTTCAACACTCTCAACACTGGAGAAGGATGGAAAGCTATATCTTGA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       81684 80 +   1371726 GCTGTACTTGGAGAACGTGGGAGG--AGACACTGAGTTTCAGTACTCCCAAAGCTGGAGAAGGATGCGAAGCTAAACCTTGC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15315373 80 -  18854210 GCTGTATTAAGAGAACTTTGGAGG--AAACACTGAGTTTCAGTACTCCCAAGGCTGGAGAAGGATGGGAAGCTGTACCCTGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34346950 76 +  94987271 ATTGTTTTCTGATGGCATTGGAAAATAAACT--GAGTCCCAAAGCTCCAAAGACCAGAGAGAGTTGGGGCACC---TCTGG-
i mm10.chr17               C 0 C 0
s canFam3.chr12             70365654 74 -  72498081 ACGATATTGAGAGAATATCAGAAGAGAAACTCTGAGTGTCAACATTCCCCTAGCTAGAGAGGGATGGTAGACAC--------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469007 74 +    935526 TATCCACGAAGAGAACATCAGAGGA-AGGCCCTGAGTTTCCACACTCCCAAAGCTAGAGGGTGATGGAAAGCT------TG-
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4435525 79 + 123392446 I

a score=756577.000000
s hg38.chr6_KI270758v1_alt     15475 48 +     76752 AACACAGGTAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTACCT
s panTro5.chr6             142715244 48 - 175400573 AACACAGGTAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866843 48 - 173848474 AACACAGGTAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384592 48 +   2807050 AACACAAGCAGTAGTTAGTGGAAACAGTGGGCTGTAAAGGAGCTACCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677512 48 - 122973662 AACACAAGTAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTACCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139301894 48 - 172585720 AACACAAGAAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTACCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462209 48 + 170955103 AACACAAGAAGTAGTTAGTGGAAATAGTGGGCTATAAAGGAGCTACCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178432 48 +    407600 AACACAAGAAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTACCT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       50889 48 +    463628 AACACAAGAAGTAGTTAGTGGAAATAGTGGGCTATAAAGGAGCTACTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629054 48 +  71996105 AACACAAGAAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTACCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49216 45 -    115496 AACAC---AAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTACCT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679610 48 -   1936607 AACACAAGAAGTAGTTAGTGGAAATAGTGGGCTATAAAGGAGCTACCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620238 48 - 171630274 AACACAAGTAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTACCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178534 48 +   1154217 AACACAAGTAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTACCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004840 48 +  15232693 AACACAAGTAGTAGTTAGTGGAAATAGTGGACTGTAAAGGAGCTACCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247756 48 +    446445 AACACAAGAAGTAGTTAGTGGAAATAGTGGGCTGTAAAGGAGCTACCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4435604 48 + 123392446 AACACGGGGAGTGGCTAGTGGAAACAGTGGGCTGTAAAGGGGGTACGT
i micMur3.chr6             I 79 C 0
s proCoq1.NW_012150019v1       81764 48 +   1371726 AACACAGGTAGTGGTTAGTGGAAACAGTGGGCTGTAAAGGGAGTACGT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15315453 48 -  18854210 AACACAGGCAGTGGTTAGAGGAAGCAGTGGGCTGTAAAGGGGGTACAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34347026 48 +  94987271 AAGATGGGTAGCGATCACTAGAAACCATGGGCTGTATGGGGTCCTCCT
i mm10.chr17               C 0 I 80
s canFam3.chr12             70365728 36 -  72498081 ACCATAGATAGTGGCTATAAGAAACAGTGGACTGTA------------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469081 48 +    935526 GGCACAGGCAGAGGCTACTGGAAGCAATGGGCAGTAAAGGAGGCACTT
i dasNov3.JH569424         C 0 C 0

a score=693704.000000
s hg38.chr6_KI270758v1_alt     15523 47 +     76752 TCTTCTCATCTCTACCATCTTATATATGACAAGAGATTGGAGTTGAC
s panTro5.chr6             142715292 47 - 175400573 TCTTCTCATCTCTACCATCTTACATATGACAAGAGATTGGAGTTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866891 47 - 173848474 TCTTCTCATCTCTACCATCTTACATATGACAAGAGATTGGAGTTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384640 47 +   2807050 TCTTCTCATCTCTACCATCTTATATATGACAAGAGATTGGAGTTGAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677560 47 - 122973662 TCTTCTCATCTCTACCATCTTATATATGACAAGAGATTGGAGTTGAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139301942 47 - 172585720 TCTTCTCATCTCTGCCACCTTAAATATGACAAGAGATTGGAGTTGAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462257 47 + 170955103 TCTTCTCATCTCTGCCACCTTAAATATGACAAGAGATTGGAGTTGAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178480 47 +    407600 TCTTCTCATCTCTGCCACCTTAAATATGACAAGAGATTGGAGTTGAC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       50937 47 +    463628 TCTTCTCATCTCTGCCACCTTAAATATGACAAGAGATTGGAGTTGAC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629102 47 +  71996105 TCTTCTCATCTCTGCCACCTTAAATATGACAAGAGATTGGAGTTGAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49261 47 -    115496 TCTTCTCATCTCTGCCACCTTAAATATGACAAGAGATTGGAGTTGAC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679658 47 -   1936607 TCTTCTCATCTCTGCCACCTTAAATATGACAAGAGATTGGAGTTGAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620286 47 - 171630274 TCTTCTCATCTCTCCCATTTTAAATATGATGAGAGATTGGAATTGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178582 47 +   1154217 TCTTCTCATCTCTACCATCTTAAATATGATGAGAGATTGGAGTTTAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004888 47 +  15232693 TCTTCTCATCTCTACCTTCTTAAATATGATGAGAGATTGGAATTGAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247804 47 +    446445 TCTTCTCATCTCTACCATCTTAAATATGATGAGAGAATGGAGTTGAC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4435652 47 + 123392446 TCTCCTAATCCCTGCCATCTTAAATGTGACCAGAGATTGGAGTTGAC
i micMur3.chr6             C 0 I 78
s proCoq1.NW_012150019v1       81812 47 +   1371726 TCTCCTAATCCCTACCATCTTAAATATGACCAGAGATTGGAGTTGAC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15315501 42 -  18854210 TCTCCTAATCCCTACCTTCTTAAATATGACCACAGACTGGAG-----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70365764 40 -  72498081 -------ATCTCTACCATCTTAAATATGATCAAACATTGCGGTAGAC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469129 47 +    935526 TTGCCTAATCCCCACCACATGAAACACAACCGGGGACTGGAGGAGAC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347074 80 +  94987271 I

a score=15561.000000
s hg38.chr6_KI270758v1_alt     15570 1 +     76752 T
s panTro5.chr6             142715339 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866938 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384687 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677607 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139301989 1 - 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462304 1 + 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178527 1 +    407600 T
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       50984 1 +    463628 T
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629149 1 +  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49308 1 -    115496 T
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679705 1 -   1936607 T
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620333 1 - 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178629 1 +   1154217 T
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004935 1 +  15232693 T
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247851 1 +    446445 T
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       81859 1 +   1371726 T
i proCoq1.NW_012150019v1   C 0 I 78
s canFam3.chr12             70365804 1 -  72498081 T
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            469176 1 +    935526 T
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347074 80 +  94987271 I
e micMur3.chr6               4435699 78 + 123392446 I
e otoGar3.GL873550          15315543 0 -  18854210 C

a score=658545.000000
s hg38.chr6_KI270758v1_alt     15571 53 +     76752 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
s panTro5.chr6             142715340 53 - 175400573 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866939 53 - 173848474 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384688 53 +   2807050 ----AACGGACGCACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677608 53 - 122973662 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139301990 53 - 172585720 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462305 53 + 170955103 ----AATGGACACACCTCATTGGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178528 53 +    407600 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       50985 53 +    463628 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629150 53 +  71996105 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49309 53 -    115496 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679706 53 -   1936607 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGAATATGAGAGAGTATAGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620334 53 - 171630274 ----AATGAACACACTTCATTTGAGG-ATTCAGGTCAATGACTATGAGAGAGTATAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178630 53 +   1154217 ----AATGGACACACCTCATTTGAAG-ACCCACTTCGGTGATTATGGGAGAGTATAGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004936 53 +  15232693 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGATTATGAGAGAGTATAGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247852 53 +    446445 ----AATGGACACACCTCATTTGAGG-ATTCAGGTCAATGATTACTAGAGAGTATAGT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15315543 52 -  18854210 ----ATTGCACACACCTGATTTGATG-ACTTGGGTCAATGAGTAGGGTAGAGTA-ACT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70365807 54 -  72498081 ----TGGGGACACTCCTCATTTGAGGAACTTAGATCAATGAATAGGGTGGAATAAATA
i canFam3.chr12            I 2 C 0
s dasNov3.JH569424            469177 57 +    935526 GCTGGGGAGACACGCCTCCTCTGAGG-ACTCAGGTCAGTAACTGTGGTGGTGTAAATT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347074 80 +  94987271 I
e micMur3.chr6               4435699 78 + 123392446 I
e proCoq1.NW_012150019v1       81860 78 +   1371726 I

a score=13073.000000
s hg38.chr6_KI270758v1_alt     15624 1 +     76752 G
s panTro5.chr6             142715393 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866992 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384741 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677661 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302043 1 - 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462358 1 + 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178581 1 +    407600 G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51038 1 +    463628 G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629203 1 +  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49362 1 -    115496 G
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679759 1 -   1936607 G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620387 1 - 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178683 1 +   1154217 G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004989 1 +  15232693 A
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247905 1 +    446445 G
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15315595 1 -  18854210 G
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            469234 1 +    935526 G
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347074 80 +  94987271 I
e micMur3.chr6               4435699 78 + 123392446 I
e proCoq1.NW_012150019v1       81860 78 +   1371726 I
e canFam3.chr12             70365861 0 -  72498081 C

a score=108518.000000
s hg38.chr6_KI270758v1_alt     15625 14 +     76752 GGCAAAGCCTAttc
s panTro5.chr6             142715394 14 - 175400573 GGCAAAGCCTAttc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140866993 14 - 173848474 GGCAAAGCCTAttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384742 14 +   2807050 GGCAAAGCCTAttc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677662 14 - 122973662 GGCAAAGCCTAttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302044 14 - 172585720 GGCAAAGCCTAttc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462359 14 + 170955103 GGCAAAGCCTAttc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178582 14 +    407600 GGCAAAGCCTAttc
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51039 14 +    463628 GGCAAAGCCttttc
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629204 14 +  71996105 GGCAAAGCCTATTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49363 14 -    115496 GGTAAAGCCTAttc
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679760 14 -   1936607 GGCAAAGCCTAttc
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620388  9 - 171630274 GGCAAAGCC-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178684  9 +   1154217 GGCAAAGCC-----
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004990  9 +  15232693 GGCAAAGCC-----
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247906  9 +    446445 GGAAAAGCC-----
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15315596 14 -  18854210 GGAAGAGCTTGTTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34347074 80 +  94987271 I
e micMur3.chr6               4435699 78 + 123392446 I
e proCoq1.NW_012150019v1       81860 78 +   1371726 I
e canFam3.chr12             70365861  0 -  72498081 C
e dasNov3.JH569424            469235  0 +    935526 C

a score=2660905.000000
s hg38.chr6_KI270758v1_alt     15639 300 +     76752 ----ttttttttttttttttttttt------ttagacggagtcttgctctgtcgcccaagctggagt-tggtggcgtgatctcagctcattgtaatctccgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgcccaccaccatgcccggataatttttgtatttttagtagagacggggtttcaccat--------------------------------------------------------------------gttggtcaggctggtctcagactcctgacctcgtgatttgcccgccttggcctcgcaaagtgctgggattacaggcatgagccaccacacccagc
s panTro5.chr6             142715408 302 - 175400573 --ttttttttttttttttttttttt------ttagacagagtcttgctctgtcgcccaagctggagt-tggtggcgtgatctcagctcattgtaatctccgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgcccaccaccatgcccggctaatttttgtatttttagtagagacggggtttcaccat--------------------------------------------------------------------gttggtcaggctggtctcagactcctgacctcgtgatttgcccgccttggcctcgcaaagtgctgggattacaggcatgagccaccgcacccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867007 304 - 173848474 ttttttttttttttttttttttttt------ttagacagagtcttgctctgtcgcccaagctggagt-tggtggcgtgatctcagctcattgtaatctccgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcacccaccaccatgcccggctaatttttgtatttttagtagagacggggtttcaccat--------------------------------------------------------------------gttggtcaggctggtctcagactcctgacctcgtgatttgcccgccttggcctcgcaaagtgctgggattacaggcatgagccaccgcacccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2384756 289 +   2807050 ---------------tttttttttt------ttagacagaatcttgctctgtcacccaggctggagt-tggtggcgtgatctcagctcattgcaatctgcacctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgcccaccaccacgcccggctaatttttgtatttttagtagagacggggtttcaccat--------------------------------------------------------------------gttggtcagcctggtctgaaactcctgacctcatgatttgcccgccttggcctcgcaaagtgctgggattacaggcatgagccaccgcacccagc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677676 299 - 122973662 -----ttttttgttgtttttttttt------ttagacagagtcttgctctgtcgcccaggctggagt-tggtggcgtgatctcagctcattgcaatttccacctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgctcaccaccacgcccagctaatttttgtatttttagtagagacggggtttcaccat--------------------------------------------------------------------gttggtcaggctggtctcaaactcctgacctcatgatttgcccaccttggcctcgcaaagtgctgggattacaggcatgagccaccgcacccagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302058 299 - 172585720 ------ttttttttttttttttttt------tgagatggagtctcgctctgtcacccaggctggagtgcagtggccagatctcagctcattgcaatttctacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgccaaccaccaagcctggctaatttttgtatttttagtagagacagggtttcaccat--------------------------------------------------------------------gttggtcaggctggtctcaaactcctgaccttgtgatttgcctgccttggcctcgcaaagtactgggattacaggcatgagccagcgcaccTCGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462373 299 + 170955103 ------ttttttttttttttttttt------tgagacggagtctcgctctgtcgcccaggctggagtgcagtggctggatctcagctcattgcaatttccacctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggattacaggcgccaaccaccaagcctggctaatttttgtatttttagtagagacagggtttcaccat--------------------------------------------------------------------gttggtcaggctggtctcaaactcctgaccttgtgatttgcctgccttggcctcgcaaagtactgggattacaggcatgagccaccgcacctggc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178596 300 +    407600 -----tttttttttttttttttttt------tgagatggagtctcgctctgtcacccaggctggagtgcagtggccagatctcagctcattgcaatttctacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgccaaccaccaagcctggctaatttttgtatttttagtagagacagggtttcaccat--------------------------------------------------------------------gttggtcaggctggtctcaaactcctgaccttgtgatttgcctgccttggcctcgcaaagtactgggattacaggcatgagccagcgcaccTCGC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51053 299 +    463628 ------ttttttttttttttttttt------tgagatggagtctcgctctgtcacccaggctggagtgcagtggccggatctcagctcattgcaatttccacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgccaaccaccaagcctggctaatttttgtatttttagtagagacagggtttcaccat--------------------------------------------------------------------gttggtcaggctggtctcaaactcctgaccttgtgatttgcctgccttggcctcgcaaactactgggattacaggcatgagccaccgcacctggc
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629218 305 +  71996105 ------ttttttttttttttttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggccggatctcagctcattgcaatttccacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgccaaccaccacgcccggctaatttttgtatttttagtagagacagggtttcaccat--------------------------------------------------------------------gttggtcaggctggtctcaaactcctgatcttgtgatttgtctgccttggcctcacaaagtactgggattacaggcatgagccaccgcacctggc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49377 290 -    115496 ------ttttttttttttttttttt--------agacagagtcttgctctgttgcccaggttggaat-caatggcgtgatctcagctcattgcaatttccacctcctgggttcaagcaattctcctgcctcagcctcctgagtagctgggatta------ccaaccaccacgcccggctaatttttgtagtttcagtagagacagggtttcaccat--------------------------------------------------------------------gttggtcaggctggtctcaaactcctgaccttgtgatttgcctgccttggcctcgcaaagtactgggattacaagcatgagccactgcacctggc
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      679774 302 -   1936607 ------ttttttttttttttttttt---ttttgagacagagtctcgctctgtcgcccaggctggagtgcagtggctggatctcagctcattgcaatttccacctcctgggttcaagcgattctcctgcctcagcctcctgagtagctgggattacaggcgccaaccaccaagcctggctaatttttgtatttttagtagagacagggtttcaccat--------------------------------------------------------------------gttggtcaggctgatctcaaactcctgaccttgtgatttgcctgccttggcctcacaaagtactgggattacaggcatgagccaccgcacctggc
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620397 323 - 171630274 ------ttttttttttttttttttt------ttagatcgagtctttctctgtcacccagactgaagt-cattggtgcaacctcggctcactgcaacctctgcctcccgggttcaagcaattctcctgcctcagcctaccaagtagctgggattataggtgcccaccaccatgtctggctaatttttgtatttttagtagacacggggtttcaccat-------------------------------------------gctggtctcaatagggtttcaccatgttggtcgggctggtctcgaactcatgacttcatgatccacctgcttcggcttcccaaagtactcagattacaggcatgagacagcccactcagc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            178693 359 +   1154217 -------------tttttttttttt------taagatggagtctcgctctgtcacccaggctgaagt-cagtggtgtgaccttggctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccaagtagctggaattataggcacccaccaccatgtctggctaattcttgtatttttagtagacacggagtttcaccatgctggtcaggctggtctcaaTggtgtttcaccatgctggtcaggctggtctcaaTAgggtttcaccatgttggtcgggctggtctcaaactcatgacttcatgatccacctgccttggcctcccaaagtactgagattacaggcataagacagtccacccggA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14004999 322 +  15232693 ----------------ttttttttt------taagatggagtctcactctgtcactcaggctgaagt-cagtggtgtgacctcggctcactgcaacctccgcctcccgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcacccaccaccatgtctggctaatttttgtatttttagtagacacagggtttcaccatgccggtcgg----------------------------------gctggtctcaaaagggtttcaccatgttggtcaggctggtctcgaactcatgacttcatgatccacctgccttggcctcccaaagtactgagattacaggcatgagacagcccacccggc
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      247915 322 +    446445 ----------------ttttttttt------taagatggagtcttgctctctcacccaggctgaagt-cagtggtgtgacctcggctcactgcaacctccactttccgggttcaagcaattctcctgcctcagcctcccaagtagctgggattacaggcacccaccaccatgtctggctaatttttgtatttttagtagacatggggtttcaccatgctggtcag----------------------------------actggtctcaatagggtttcaccatgttggtcgggctggtctcaaactcatgacttcatgatccacctgcctcggcctcccaaagtactgagattacaggcatgagacaGCCCACATGGC
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34347074  80 +  94987271 I
e micMur3.chr6               4435699  78 + 123392446 I
e proCoq1.NW_012150019v1       81860  78 +   1371726 I
e canFam3.chr12             70365861   0 -  72498081 C
e otoGar3.GL873550          15315610   0 -  18854210 C
e dasNov3.JH569424            469235   0 +    935526 C

a score=12376.000000
s hg38.chr6_KI270758v1_alt     15939 1 +     76752 T
s panTro5.chr6             142715710 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867311 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385045 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677975 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302357 1 - 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462672 1 + 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178896 1 +    407600 T
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51352 1 +    463628 T
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629523 1 +  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49667 1 -    115496 T
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680076 1 -   1936607 T
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620720 1 - 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179052 1 +   1154217 T
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005321 1 +  15232693 T
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      248237 1 +    446445 T
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70365861 1 -  72498081 T
i canFam3.chr12            C 0 C 0
e mm10.chr17                34347074 80 +  94987271 I
e micMur3.chr6               4435699 78 + 123392446 I
e proCoq1.NW_012150019v1       81860 78 +   1371726 I
e otoGar3.GL873550          15315610 0 -  18854210 C
e dasNov3.JH569424            469235 0 +    935526 C

a score=173982.000000
s hg38.chr6_KI270758v1_alt     15940 14 +     76752 GGCAAAGCCTATTC
s panTro5.chr6             142715711 14 - 175400573 GGCAAAGCCTATTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867312 14 - 173848474 GGCAAAGCCTATTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385046 14 +   2807050 GGCAAAGCCTATTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677976 14 - 122973662 GGCAAAGCCTATTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302358 14 - 172585720 GGCAAAGCCTATTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462673 14 + 170955103 GGCAAAGCCTATTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178897 14 +    407600 GGCAAAGCCTATTC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51353 14 +    463628 GGCAAAGCCTATCC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629524 14 +  71996105 GGCAAAGCCTATTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49668 14 -    115496 GGCAAAGCCTATTC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680077 14 -   1936607 GGCAAAGCCTATTC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620721 14 - 171630274 GGCAAAGCCCATTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179053 14 +   1154217 GGCAAAGGCTATTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005322 14 +  15232693 GGCAAAGCCTATTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      248238 14 +    446445 GGCAAAGCCTATTC
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70365862 14 -  72498081 GGCAGAGCTTATTC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469235 14 +    935526 GGCAGACCATATTT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347074 80 +  94987271 I
e micMur3.chr6               4435699 78 + 123392446 I
e proCoq1.NW_012150019v1       81860 78 +   1371726 I
e otoGar3.GL873550          15315610  0 -  18854210 C

a score=248652.000000
s hg38.chr6_KI270758v1_alt     15954 19 +     76752 TATTGGGAACGTT-AGAGAT
s panTro5.chr6             142715725 19 - 175400573 TATTGGGAACGTT-AGAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867326 19 - 173848474 TATTGGGAACGTT-AGAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385060 19 +   2807050 TATTGGGAACGTT-AGAGAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45677990 19 - 122973662 TATTGTGAACGTT-AGAGAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302372 19 - 172585720 TATTGGGAACATT-AGAGAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462687 19 + 170955103 TATTGGGAACATT-AGAGAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178911 19 +    407600 TATTGGGAACATT-AGAGAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51367 19 +    463628 TATTGGGAACATT-AGAGAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629538 19 +  71996105 TATTGGGAACATT-AGAGAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49682 19 -    115496 TATTGGGAACATT-AGAGAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680091 19 -   1936607 TACTGGGAACATT-AGAGAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620735 19 - 171630274 TATTGGGAACATT-AGAGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179067 19 +   1154217 TGTTGGGAACATT-AGAGAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005336 19 +  15232693 TATTGGGAACATT-AGAGAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      248252 19 +    446445 TATTGGGAACATT-AGAGAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15315610 19 -  18854210 TACCTGGAACACT-AAGAAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70365876 19 -  72498081 TACTGGGAGAAAT-AGAGAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469249 20 +    935526 TACTGGGAACACTAAGAGAT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347074 80 +  94987271 I
e micMur3.chr6               4435699 78 + 123392446 I
e proCoq1.NW_012150019v1       81860 78 +   1371726 I

a score=12907.000000
s hg38.chr6_KI270758v1_alt     15973 1 +     76752 A
s panTro5.chr6             142715744 1 - 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867345 1 - 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385079 1 +   2807050 A
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678009 1 - 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302391 1 - 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462706 1 + 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178930 1 +    407600 A
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51386 1 +    463628 A
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629557 1 +  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49701 1 -    115496 A
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680110 1 -   1936607 A
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620754 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179086 1 +   1154217 A
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005355 1 +  15232693 A
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      248271 1 +    446445 A
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4435777 1 + 123392446 A
i micMur3.chr6             I 78 C 0
s otoGar3.GL873550          15315629 1 -  18854210 G
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70365895 1 -  72498081 A
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469269 1 +    935526 G
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347074 80 +  94987271 I
e proCoq1.NW_012150019v1       81860 78 +   1371726 I

a score=85459.000000
s hg38.chr6_KI270758v1_alt     15974 5 +     76752 ATAAC
s panTro5.chr6             142715745 5 - 175400573 ATAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867346 5 - 173848474 ATAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385080 5 +   2807050 ATAAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678010 5 - 122973662 ATAAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302392 5 - 172585720 ATAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462707 5 + 170955103 ATAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178931 5 +    407600 ATAAC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51387 5 +    463628 ATAAC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629558 5 +  71996105 ACAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49702 5 -    115496 ATAAC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680111 5 -   1936607 ATAAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620755 5 - 171630274 ATAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179087 5 +   1154217 ATAAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005356 5 +  15232693 ATAAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      248272 5 +    446445 ATAAC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4435778 5 + 123392446 ATAAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       81938 5 +   1371726 ATAAT
i proCoq1.NW_012150019v1   I 78 C 0
s otoGar3.GL873550          15315630 5 -  18854210 ATGAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70365896 5 -  72498081 ATAAC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469270 5 +    935526 ATAAC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347074 80 +  94987271 I

a score=961719.000000
s hg38.chr6_KI270758v1_alt     15979 68 +     76752 CCACAGAA---CGGCTTTAATAT-TCCTTCCCTCATGTCATAAGATTATGAAAG-TTTTTCTTTTGTCATATG
s panTro5.chr6             142715750 68 - 175400573 CCACAGAA---CGGCTTTAATAT-TCCTTCCCTCATGTCATAAGATTATGAAAG-TTTTTCTCTTGTCATATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867351 68 - 173848474 CCACAGAA---CGGCTTTAATAT-TCCTTCCCTCATGTCATAAGATTATGAAAG-TTTTTCTCTTGTCATATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385085 68 +   2807050 CCACAGGA---GGGCTTTAATAT-TCCTTCTCTCATGTCATAAGATTATGAAAG-CTTTTCTCTTGTCATATG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678015 68 - 122973662 CCACAGGA---GGGCTTTAATAT-TCCTTCCCTCGTGTCATAAGATTATGAAAG-TTTTTCTCTTGTCATATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302397 68 - 172585720 CCACAGAA---GGACTTTAATAT-TCCTTCCCTCATGTCATAAGATTATGAAAG-TTTTTCTCTTGTCATATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462712 68 + 170955103 CCACAGAA---GGACTTTAATAT-TCCTTCCCTCGTGTCATAAGATTATGAAAG-TTTTTCTCTTGTCGTATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      178936 68 +    407600 CCACAGAA---GGACTTTAATAT-TCCTTCCCTCATGTCATAAGATTATGAAAG-TTTTTCTCTTGTCATATG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51392 68 +    463628 CCACAGAA---GGACTTTAATAT-TCCTTCCCTCATGTCATAAGATTATGAAAG-TTTTTCTCTTGTCATATG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629563 68 +  71996105 TCACAGAA---GGACTTTAATAT-TCCTTCCCTCATGTCATAAGATTATGAAAG-TTTTTCTCTTGTCGTATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49707 68 -    115496 CCACAGAA---GGACTTTAATAT-TCCTTCCCTCATGTCATAAGATTATGAAAG-TGTTTCTCTTGTCATATG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680116 68 -   1936607 CCACAGAA---GGACTTTAATAT-TCCTTCCCTCATGTCATAAGATTATGAAAG-TTTTTCTCTTGTCATATG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620760 67 - 171630274 CCACAGGA---GGGCTTTACTAT-TCCTTCCTTCATGCC--AAGACTGTGAAAGTTTTTTCTCCTGTCATATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179092 69 +   1154217 CCACAGGA---GGGCTTTACTAT-TCCTTCCCTCATGTCATAAGACTACGAAAGTTTTTTCTCCTGTCATATG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005361 69 +  15232693 CCACAGGA---GGGCTTTACTAT-TCCTTCCCTCATGTCATAAGACTACAAAAGTTTTTTCTCCTGTCATATG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      248277 69 +    446445 CCACAGGA---GGGCTTTACTAT-TCCTTCCCTCATGTCATAAGACTACGAAAGTTTTTTCTCCTGTCATATG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4435783 67 + 123392446 CCACAGGA---GGGCTTTGCTAT-TCCTTCCCTCCTGTCACAGGATTAGGAAAG--TTTTCTCTTGTCATGTG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       81943 68 +   1371726 CCACAGGA---GGGCTTTGCTAT-TCCTTCCCTCATGTCATAGGATTAGGAAAA-TTTTTCTCTTGTCACACG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15315635 68 -  18854210 CCACAGGA---GGGCTTTGCTAT-TTCTTCCTTAATGTCGTAGGGTCATGAAAG-TTTTTCTCCTGTCATGTG
i otoGar3.GL873550         C 0 I 294
s mm10.chr17                34347154 69 +  94987271 CTAAAGAA---TAGCTTGGGCACACCCTTAGCCTAGGTCAACGGGCAGTGGAAG-CTCTCCTCCTGTCTTAAT
i mm10.chr17               I 80 I 1
s canFam3.chr12             70365901 67 -  72498081 CTGCAGGA---GAGCTTTCCCGT-AACGTCCCTCAGGTAATAACATTCTGAAAG-CTCTCTTCATGTCATAA-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469275 55 +    935526 CTGCGGGGGGTGGGGGGTACTGT-TCCTTCCGTCACGTTTTGAGATTATTGAAG-TT----------------
i dasNov3.JH569424         C 0 C 0

a score=1412440.000000
s hg38.chr6_KI270758v1_alt     16047 102 +     76752 ATTATTAAAGATCTGCTCTAAAGAATATATTTTGATGTTCAACATAGACAGTCCTGAAAATTAGGAGACTTCGACTCTCTTGTTTCTGAAGATACAGTGTTA
s panTro5.chr6             142715818 102 - 175400573 ATTATTAAAGATCTGCTGTAAAGAATATATTTTGATGTTCAACATAGACAGTCCTGAAAATTAGGAGACTTCGACTCTCTTGTTTCTGAAGATACAGTGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867419 102 - 173848474 ATTATTAAAGATCTGCTCTAAAGAATATATTTTGATGTTCAACATAGACAGTCCTGAAAATTAGGAGACTTCGACTCTCTTGTTTCTGAAGATACAGTGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385153 102 +   2807050 ATTATTAAAGATCTGCTCTAAAGAATATATTTTGATGTTCGACATAGACAGTCCTGAAAATTAAGAGACTTCAACTCTCATGTTTCTGAAGATACAGTGTTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678083 101 - 122973662 ATTATTAAAGATCTGCTCTAAAGAATATATTTTGATTTTCAACATAGACAGTCCTGAAAA-TAAGAGACTTCAACTCTCATGTTTCTGAAAATACAGTGTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302465 102 - 172585720 ATTATTAAAGATCTGCTCTAAACAATATATTTTGATGTTCAACATAGACAGTCCTGAAAATTAAGAGACTTCGACTCTCATGTTTTCGAAAATACAATGTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462780 102 + 170955103 ATTATTAAAGATCTGCTCTAAAGAATATATTTTGATGTTCAACATAGACAGTCCTGAAAATTAAGAGACTTCGACTCTCATGTTTTCGAAAATACAATGTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179004 102 +    407600 ATTATTAAAGATCTGCTCTAAACAATATATTTTGATGTTCAACATAGACAGTCCTGAAAATTAAGAGACTTCGACTCTCATGTTTTCGAAAATACAATGTTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51460 101 +    463628 ATTATTAAAGATCTGCTCTAAAGAATATATTCTGATGTTCAACATAGACAGTCCTGAAAATTAAGAGACTTCGAC-CTCATGTTTCCAAAAATACAATGTTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629631 102 +  71996105 ATTATTAAAGATCTGCTCTAAAGAATATATTTTGATGTTCAGCATAGACAGTCCTGAAAATTAAGAGACTTTGACTCTCATGTTTCCGAAAATACAGTGTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49775 102 -    115496 ACTATTAAAGATCTGCTCTAAAGAATATATTTTGACGTTCAACATAGACAGTCCTGAAAATTAAGAGACTTTGACGCTCATGTTTCCGAAAATACAGTGTTA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680184 102 -   1936607 ATTATTAAAGATCTGCTCTAAAGAATATATTTTGATGTTCAACATAGACAGTCCTGAAAATTAAGAGACTTCGACTCTCATGTTTCCAAAAATACAATGTTA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620827 102 - 171630274 ATTATTAAACATCTGCTCTAAAGAATATATTTTGACATTCAATATAGACAATCCTGAAAATTAAAAGCCTTTAACTCTCATGTTTCCAAAAATATAGTGTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179161 102 +   1154217 ATTATTAAACATCTGCTCTAAAGAATATATTTTGACATTCAACATAGACAATCCTGAAAATTAAAACACTTCGACTCTCATGGTTCCGAAAATATAGTGTTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005430 102 +  15232693 ATTATTAAACATCTGCTCTAAAGAATATATTTTGACATTCAACATAGACAATCCTGAAAATTAAAAGACTTCGACTCTCATGTTTCCAAAAATATAGTGTTA
i cebCap1.NW_016107339v1   C 0 I 323
s aotNan1.NW_018508875v1      248346 102 +    446445 ATTATTAAACATCTGCTCTAAAGAATATATTTTGACATTCAACATAGACAATCCTGAAAATTAAAAGACTTCGACTCTCATGTTTCTGAAAATATAGTGTTA
i aotNan1.NW_018508875v1   C 0 I 322
s micMur3.chr6               4435850 102 + 123392446 ATTATGAAAGTTCTGATCCAAAGAATGTGTTTTGATTTTCACCATAGAGAATACAGAAAGTTAAGAGACTCTCATTCTCATGTTTCTGAAAGTACAGTGCAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       82011 102 +   1371726 ATTACTAAAGTTCTGATCCAAAGAATGTATTTTGATGTTCACCATAGAGAATCCAGAAAGTTAAGAGACTCTGACTCTCATGTTTCTGAAAATACAGTGCAA
i proCoq1.NW_012150019v1   C 0 C 0
s mm10.chr17                34347224 101 +  94987271 AGGATTAAAGGCTTGAACCAAA-AGTGTATTTTGAGATTCTCCATAGATGTTCCTGAAAATTAGGAGGTTTTACATGTCTTGTTTCTGGAAACACTGTATAA
i mm10.chr17               I 1 C 0
s canFam3.chr12             70365968 102 -  72498081 ATTATTGAAGTTCTGATCCCAAGAATTTGTTTTGATATTCACCACTGAAAAAACTGAAAGTTAAATCATTCTGACCTTCATGTTTCTGACCATACAGTACAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469330  88 +    935526 ------------CTGATCCAAAGACTGTATTTCGATGTTCACCAGAGAGGA--CTAAAAGCTAAGCCGCTCTGACCCTCGTGTTTCTGAAAATCCACTGTAA
i dasNov3.JH569424         C 0 C 0
e otoGar3.GL873550          15315703 294 -  18854210 I

a score=11422.000000
s hg38.chr6_KI270758v1_alt     16149 1 +     76752 T
s panTro5.chr6             142715920 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867521 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385255 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678184 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302567 1 - 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462882 1 + 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179106 1 +    407600 T
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51561 1 +    463628 T
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629733 1 +  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49877 1 -    115496 T
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680286 1 -   1936607 T
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620929 1 - 171630274 C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179263 1 +   1154217 C
i saiBol1.JH378315         C 0 I 299
s micMur3.chr6               4435952 1 + 123392446 T
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       82113 1 +   1371726 T
i proCoq1.NW_012150019v1   C 0 C 0
s mm10.chr17                34347325 1 +  94987271 T
i mm10.chr17               C 0 C 0
s canFam3.chr12             70366070 1 -  72498081 T
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469418 1 +    935526 T
i dasNov3.JH569424         C 0 C 0
e cebCap1.NW_016107339v1    14005532 323 +  15232693 I
e aotNan1.NW_018508875v1      248448 322 +    446445 I
e otoGar3.GL873550          15315703 294 -  18854210 I

a score=6747.000000
s hg38.chr6_KI270758v1_alt     16150 1 +     76752 G
s panTro5.chr6             142715921 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867522 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385256 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678185 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302568 1 - 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462883 1 + 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179107 1 +    407600 G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51562 1 +    463628 G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629734 1 +  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49878 1 -    115496 G
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680287 1 -   1936607 G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620930 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179563 1 +   1154217 g
i saiBol1.JH378315         I 299 C 0
s micMur3.chr6               4435953 1 + 123392446 A
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       82114 1 +   1371726 A
i proCoq1.NW_012150019v1   C 0 C 0
s mm10.chr17                34347326 1 +  94987271 A
i mm10.chr17               C 0 I 1
s canFam3.chr12             70366071 1 -  72498081 A
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            469419 1 +    935526 A
i dasNov3.JH569424         C 0 C 0
e cebCap1.NW_016107339v1    14005532 323 +  15232693 I
e aotNan1.NW_018508875v1      248448 322 +    446445 I
e otoGar3.GL873550          15315703 294 -  18854210 I

a score=7145.000000
s hg38.chr6_KI270758v1_alt     16151 1 +     76752 A
s panTro5.chr6             142715922 1 - 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867523 1 - 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385257 1 +   2807050 A
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678186 1 - 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302569 1 - 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462884 1 + 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179108 1 +    407600 A
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51563 1 +    463628 A
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629735 1 +  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49879 1 -    115496 A
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680288 1 -   1936607 A
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138620931 1 - 171630274 A
i calJac3.chr4             C 0 I 299
s saiBol1.JH378315            179564 1 +   1154217 g
i saiBol1.JH378315         C 0 C 0
s micMur3.chr6               4435954 1 + 123392446 G
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       82115 1 +   1371726 G
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15315997 1 -  18854210 a
i otoGar3.GL873550         I 294 C 0
s dasNov3.JH569424            469420 1 +    935526 G
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347327 1 +  94987271 I
e cebCap1.NW_016107339v1    14005532 323 +  15232693 I
e aotNan1.NW_018508875v1      248448 322 +    446445 I
e canFam3.chr12             70366072 1 -  72498081 I

a score=154476.000000
s hg38.chr6_KI270758v1_alt     16152 15 +     76752 AAAGGAGAATGTTAA
s panTro5.chr6             142715923 15 - 175400573 AAAGGAGAATGTTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867524 15 - 173848474 AAAGGAGAATGTTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385258 15 +   2807050 AAAGGAGAATGTTAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678187 15 - 122973662 AAAGGAAAATGTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302570 15 - 172585720 AAAGGAAAATGTTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462885 15 + 170955103 AAAGGAAAATGTTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179109 15 +    407600 AAAGGAAAATGTTAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51564 15 +    463628 AAAGGAAAATGTTAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629736 15 +  71996105 AAAGGAAAATGTTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49880 15 -    115496 AAAGGAAAATGTTAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680289 15 -   1936607 AAAGGAAAATGTTAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621231 11 - 171630274 aaaggaaaaTG----
i calJac3.chr4             I 299 I 4
s saiBol1.JH378315            179565 15 +   1154217 aaaggaaaaTGTTTT
i saiBol1.JH378315         C 0 C 0
s micMur3.chr6               4435955 15 + 123392446 AAAGGAAAATGTTAA
i micMur3.chr6             C 0 I 9
s proCoq1.NW_012150019v1       82116 15 +   1371726 AAAGGAAAATGTTAA
i proCoq1.NW_012150019v1   C 0 I 338
s otoGar3.GL873550          15315998 11 -  18854210 aaaaaagaaTG----
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34347328 11 +  94987271 ACCGAAAAATA----
i mm10.chr17               I 1 C 0
s canFam3.chr12             70366073 14 -  72498081 AAAGGAAAATTAAA-
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            469421 15 +    935526 AAAGGAATCTGCCAA
i dasNov3.JH569424         C 0 C 0
e cebCap1.NW_016107339v1    14005532 323 +  15232693 I
e aotNan1.NW_018508875v1      248448 322 +    446445 I

a score=18970.000000
s hg38.chr6_KI270758v1_alt     16167 4 +     76752 TTTC
s panTro5.chr6             142715938 4 - 175400573 GTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867539 4 - 173848474 GTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385273 4 +   2807050 GTTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678202 4 - 122973662 GTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302585 4 - 172585720 GTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462900 4 + 170955103 GTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179124 4 +    407600 GTTC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51579 4 +    463628 GTTC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629751 4 +  71996105 GTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49895 4 -    115496 GTTC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680304 4 -   1936607 GTTC
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            179580 4 +   1154217 GTTT
i saiBol1.JH378315         C 0 I 6
s mm10.chr17                34347339 3 +  94987271 -TTT
i mm10.chr17               C 0 I 1
s canFam3.chr12             70366087 2 -  72498081 --CC
i canFam3.chr12            C 0 I 5
s dasNov3.JH569424            469436 1 +    935526 A---
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4435970 9 + 123392446 I
e cebCap1.NW_016107339v1    14005532 323 +  15232693 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e aotNan1.NW_018508875v1      248448 322 +    446445 I
e calJac3.chr4             138621242 4 - 171630274 I
e otoGar3.GL873550          15316009 0 -  18854210 C

a score=7513.000000
s hg38.chr6_KI270758v1_alt     16171 1 +     76752 T
s panTro5.chr6             142715942 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867543 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385277 1 +   2807050 C
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678206 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302589 1 - 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462904 1 + 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179128 1 +    407600 T
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51583 1 +    463628 T
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629755 1 +  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49899 1 -    115496 T
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680308 1 -   1936607 T
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621246 1 - 171630274 T
i calJac3.chr4             I 4 C 0
s saiBol1.JH378315            179590 1 +   1154217 T
i saiBol1.JH378315         I 6 C 0
s aotNan1.NW_018508875v1      248770 1 +    446445 T
i aotNan1.NW_018508875v1   I 322 C 0
s mm10.chr17                34347343 1 +  94987271 C
i mm10.chr17               I 1 C 0
e micMur3.chr6               4435970 9 + 123392446 I
e cebCap1.NW_016107339v1    14005532 323 +  15232693 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e canFam3.chr12             70366089 5 -  72498081 I
e otoGar3.GL873550          15316009 0 -  18854210 C
e dasNov3.JH569424            469437 0 +    935526 C

a score=46617.000000
s hg38.chr6_KI270758v1_alt     16172 6 +     76752 TTCCAC
s panTro5.chr6             142715943 6 - 175400573 TTCCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867544 6 - 173848474 TTCCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385278 6 +   2807050 TTCCAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678207 6 - 122973662 TTCCGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302590 6 - 172585720 TTCCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462905 6 + 170955103 TTCCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179129 6 +    407600 TTCCAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51584 6 +    463628 TTCCAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629756 6 +  71996105 TTCCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49900 6 -    115496 TTCCAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680309 6 -   1936607 TTCCAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621247 6 - 171630274 TTCCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179591 6 +   1154217 TTCCAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005855 6 +  15232693 TTCCAT
i cebCap1.NW_016107339v1   I 323 C 0
s aotNan1.NW_018508875v1      248771 6 +    446445 TTCCAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15316009 2 -  18854210 ---AA-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34347344 6 +  94987271 TTACAG
i mm10.chr17               C 0 I 2
s canFam3.chr12             70366094 1 -  72498081 T-----
i canFam3.chr12            I 5 C 0
s dasNov3.JH569424            469437 4 +    935526 --CCAC
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4435970 9 + 123392446 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I

a score=760020.000000
s hg38.chr6_KI270758v1_alt     16178 53 +     76752 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
s panTro5.chr6             142715949 53 - 175400573 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867550 53 - 173848474 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385284 53 +   2807050 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678213 53 - 122973662 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302596 53 - 172585720 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462911 53 + 170955103 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTAGCAGTGAGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179135 53 +    407600 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51590 53 +    463628 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629762 53 +  71996105 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49906 53 -    115496 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680315 53 -   1936607 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GAGTGACCTGGCAGTGAGGGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621253 53 - 171630274 -------------AGAAAGGACTGGAATACAAATAATTCC-----ATGAA-GACTGACCTGGCAGTGAGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179597 53 +   1154217 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GACTGACCTGGCAGTGAGGGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005861 52 +  15232693 -------------AGAAAGGACTGGAATACAAATAA-TCC-----ATGAA-GACTGACCTGGCAGTGAGGGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      248777 53 +    446445 -------------AGAAAGGACTGGAATACAAATACTTCC-----ATGAA-GACTGACCTGGCAGTGAGGGA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4435979 54 + 123392446 -------------AGAAAGGACTGGAATCCAAATACTTCC-----AGCGAGGAGTGGCTTGGCAGCGAGGGA
i micMur3.chr6             I 9 I 268
s otoGar3.GL873550          15316011 53 -  18854210 -------------AGAAAGGACTTGAAGCCAAATACATCC-----AAAGA-TAATGACTTGGCAGTGAGGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34347352 44 +  94987271 -------------AGAAAGGGCTAAAAGCCAAA--------------GAG-AAGCCGCCAAGCAGCTAGGTT
i mm10.chr17               I 2 C 0
s canFam3.chr12             70366095 58 -  72498081 -------------AGAAAGGCTTGGAATCTGAATACTTCCAATGAAGGGA-GAGAGCCCTGACAGTGAGGCA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469441 67 +    935526 ACAGAAAGGACAGCGAAAGGGCTGGAAGCCATATTCCACT----AATGAA-GAGAGGACTGGCAGTGACACA
i dasNov3.JH569424         C 0 C 0
e proCoq1.NW_012150019v1       82131 338 +   1371726 I

a score=113676.000000
s hg38.chr6_KI270758v1_alt     16231 10 +     76752 GCCCATCGGA
s panTro5.chr6             142716002 10 - 175400573 GCCCATCGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867603 10 - 173848474 GCCCATCGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385337 10 +   2807050 GCCCATCGGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678266 10 - 122973662 GCCCATCAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302649 10 - 172585720 GCCTATCGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462964 10 + 170955103 GCCTATCGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179188 10 +    407600 GCCTATCGGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51643 10 +    463628 GCCTATTGGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629815 10 +  71996105 GCCTATTGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49959 10 -    115496 GCCTATTGGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680368 10 -   1936607 GCCTATCGGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621306 10 - 171630274 GCCCATCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179650 10 +   1154217 GCCCATCAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005913 10 +  15232693 GCCCATCAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      248830 10 +    446445 GCCCATCAGA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15316064 10 -  18854210 GCCCATAAGG
i otoGar3.GL873550         C 0 I 1
s mm10.chr17                34347396 10 +  94987271 TCCCACCTGG
i mm10.chr17               C 0 I 1
s canFam3.chr12             70366153 10 -  72498081 GCTCCTCAGA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469508  9 +    935526 GCCCACCTG-
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4436033 268 + 123392446 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I

a score=2818.000000
s hg38.chr6_KI270758v1_alt     16241 1 +     76752 T
s panTro5.chr6             142716012 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867613 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385347 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678276 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             39629825 1 +  71996105 T
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             138621316 1 - 171630274 C
i calJac3.chr4             C 0 I 1
s saiBol1.JH378315            179660 1 +   1154217 T
i saiBol1.JH378315         C 0 I 1
s cebCap1.NW_016107339v1    14005923 1 +  15232693 T
i cebCap1.NW_016107339v1   C 0 I 1
s aotNan1.NW_018508875v1      248840 1 +    446445 C
i aotNan1.NW_018508875v1   C 0 I 1
s dasNov3.JH569424            469517 1 +    935526 T
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347406 1 +  94987271 I
e manLeu1.NW_012101600v1       49969 0 -    115496 C
e micMur3.chr6               4436033 268 + 123392446 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e canFam3.chr12             70366163 0 -  72498081 C
e macFas5.chr4             138462974 0 + 170955103 C
e rheMac8.chr4             139302659 0 - 172585720 C
e macNem1.NW_012013344v1      179198 0 +    407600 C
e cerAty1.NW_012003702v1       51653 0 +    463628 C
e otoGar3.GL873550          15316074 1 -  18854210 I
e colAng1.NW_012115555v1      680378 0 -   1936607 C

a score=10041.000000
s hg38.chr6_KI270758v1_alt     16242 6 +     76752 GGTGAA
s panTro5.chr6             142716013 6 - 175400573 GGTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867614 6 - 173848474 GGTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385348 6 +   2807050 GGTGGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678277 6 - 122973662 AGTGAG
i nomLeu3.chr1a            C 0 C 0
s chlSab2.chr17             39629826 6 +  71996105 GGTGAA
i chlSab2.chr17            C 0 C 0
s mm10.chr17                34347407 6 +  94987271 GCTGAA
i mm10.chr17               I 1 C 0
s dasNov3.JH569424            469518 6 +    935526 GGCGAG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       49969 0 -    115496 C
e micMur3.chr6               4436033 268 + 123392446 I
e cebCap1.NW_016107339v1    14005924 1 +  15232693 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e aotNan1.NW_018508875v1      248841 1 +    446445 I
e calJac3.chr4             138621317 1 - 171630274 I
e canFam3.chr12             70366163 0 -  72498081 C
e saiBol1.JH378315            179661 1 +   1154217 I
e macFas5.chr4             138462974 0 + 170955103 C
e rheMac8.chr4             139302659 0 - 172585720 C
e macNem1.NW_012013344v1      179198 0 +    407600 C
e cerAty1.NW_012003702v1       51653 0 +    463628 C
e otoGar3.GL873550          15316074 1 -  18854210 I
e colAng1.NW_012115555v1      680378 0 -   1936607 C

a score=1179.000000
s hg38.chr6_KI270758v1_alt     16248 1 +     76752 T
s panTro5.chr6             142716019 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867620 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385354 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678283 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s mm10.chr17                34347413 1 +  94987271 T
i mm10.chr17               C 0 I 139
s dasNov3.JH569424            469524 1 +    935526 C
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       49969 0 -    115496 C
e micMur3.chr6               4436033 268 + 123392446 I
e cebCap1.NW_016107339v1    14005924 1 +  15232693 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e aotNan1.NW_018508875v1      248841 1 +    446445 I
e calJac3.chr4             138621317 1 - 171630274 I
e canFam3.chr12             70366163 0 -  72498081 C
e saiBol1.JH378315            179661 1 +   1154217 I
e macFas5.chr4             138462974 0 + 170955103 C
e rheMac8.chr4             139302659 0 - 172585720 C
e macNem1.NW_012013344v1      179198 0 +    407600 C
e chlSab2.chr17             39629832 0 +  71996105 C
e cerAty1.NW_012003702v1       51653 0 +    463628 C
e otoGar3.GL873550          15316074 1 -  18854210 I
e colAng1.NW_012115555v1      680378 0 -   1936607 C

a score=5195.000000
s hg38.chr6_KI270758v1_alt     16249 9 +     76752 CCATTGttt-
s panTro5.chr6             142716020 8 - 175400573 CCATTG-tt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867621 8 - 173848474 CCATTG-tt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385355 8 +   2807050 CCATTG-tt-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678284 8 - 122973662 CCATTG-tt-
i nomLeu3.chr1a            C 0 C 0
s dasNov3.JH569424            469525 9 +    935526 CCACCG-CTT
i dasNov3.JH569424         C 0 I 294
e mm10.chr17                34347414 139 +  94987271 I
e manLeu1.NW_012101600v1       49969 0 -    115496 C
e micMur3.chr6               4436033 268 + 123392446 I
e cebCap1.NW_016107339v1    14005924 1 +  15232693 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e aotNan1.NW_018508875v1      248841 1 +    446445 I
e calJac3.chr4             138621317 1 - 171630274 I
e canFam3.chr12             70366163 0 -  72498081 C
e saiBol1.JH378315            179661 1 +   1154217 I
e macFas5.chr4             138462974 0 + 170955103 C
e rheMac8.chr4             139302659 0 - 172585720 C
e macNem1.NW_012013344v1      179198 0 +    407600 C
e chlSab2.chr17             39629832 0 +  71996105 C
e cerAty1.NW_012003702v1       51653 0 +    463628 C
e otoGar3.GL873550          15316074 1 -  18854210 I
e colAng1.NW_012115555v1      680378 0 -   1936607 C

a score=269453.000000
s hg38.chr6_KI270758v1_alt     16258 329 +     76752 tttt--ttgttgttgttttgttttcgagacggaagtcttgctctgtcgcccaggctggagtgcagtggcacgatctcggctcactgaaagct----ctgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctaggactacaggcgcccgccaccatgcccggccaatttttttttttttttttttttttttttttttgtattttcagtagagacggggttgcaccatgttaaccaggatgg-ttttgatctcctgacctcgtgatctgcctgcttctgcctcccaaagtgctgggattacaggcatgagccaccgtgcctggc
s panTro5.chr6             142716028 314 - 175400573 tttt--ttgttgttgttttgttttcgagacggaagtcttgctctgtcgcccaggctggagtgcagtggcacgatctcggctcactgaaagct----ctgcctcctgggttcaagccattctcctgcctcagcctcccgagtagctaggactacaggcgcccgccaccatgcccggccaa---------------ttttttttttttttttgtattttcagtagagacggggttgcaccatgttaaccaggatgg-ttttgatctcctgacctcgtgatctgcctacttctgcctcccaaagtgctgggattacaggcatgagccaccgtgcctggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867629 318 - 173848474 tttt--ttgttgttgttttgttttcgagacggaagtcttgctctgtcgcccaggctggagtgcagtggcacgatctcggctcactgaaagct----ctgcctcctgggttcaagccattctcctgcctcagcctcccgagtagctaggactacaggcgcccgccaccatgcccggccaa------------tttttttttttttttttttgtattttcagtagagacggggttgcaccatgttaaccaggatggtttttgatctcctgacctcgtgatctgcctacttctgcctcccaaagtgctgggattacaggcatgagccaccgtgcctggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385363 331 +   2807050 cttttgttgttgttgttttgttttcgagacggaagtcttgctctgtcgcccaggctggagtgcagtggcacgatctcggctcaccgaaagctctgcctgcctcctgggttcacgccattctcctgcctcagcctccctagtagctgggactacaggcgcccgccaccatgcccggccat----tttttttttttttttttttttttttttgtatttttagtagacacggggtttcactgtgttagccagggtgg-ttttgatctcctgacctcgtgatctgcccgcttctgcctcccaaagtgctgggattacaggcatgagccaccgcgcctggc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678292 323 - 122973662 cttttgttgttgttgttttgttttcgagatggaggtctcgctctgtcgcccaggctggagtgcagcggcgcaatctcggctcactgcaagct----ctgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgccaccatgctcggccaa--------tttttttttttttttttttttttgtatttttagtagagactgggtttcaccgtgttagccaggatgg-ttttgatctcctgacctcgtgatccgcccgcttctgcctcccaaagtgctgggattacaggcatgaggcactgcgcccggc
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17                34347414 139 +  94987271 I
e manLeu1.NW_012101600v1       49969   0 -    115496 C
e micMur3.chr6               4436033 268 + 123392446 I
e cebCap1.NW_016107339v1    14005924   1 +  15232693 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e aotNan1.NW_018508875v1      248841   1 +    446445 I
e calJac3.chr4             138621317   1 - 171630274 I
e canFam3.chr12             70366163   0 -  72498081 C
e saiBol1.JH378315            179661   1 +   1154217 I
e macFas5.chr4             138462974   0 + 170955103 C
e rheMac8.chr4             139302659   0 - 172585720 C
e macNem1.NW_012013344v1      179198   0 +    407600 C
e chlSab2.chr17             39629832   0 +  71996105 C
e cerAty1.NW_012003702v1       51653   0 +    463628 C
e otoGar3.GL873550          15316074   1 -  18854210 I
e dasNov3.JH569424            469534 294 +    935526 I
e colAng1.NW_012115555v1      680378   0 -   1936607 C

a score=3575.000000
s hg38.chr6_KI270758v1_alt     16587 1 +     76752 T
s panTro5.chr6             142716342 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867947 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385694 1 +   2807050 c
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678615 1 - 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302659 1 - 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462974 1 + 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179198 1 +    407600 T
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51653 1 +    463628 T
i cerAty1.NW_012003702v1   C 0 C 0
s manLeu1.NW_012101600v1       49969 1 -    115496 T
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680378 1 -   1936607 T
i colAng1.NW_012115555v1   C 0 C 0
s canFam3.chr12             70366163 1 -  72498081 T
i canFam3.chr12            C 0 C 0
e mm10.chr17                34347414 139 +  94987271 I
e micMur3.chr6               4436033 268 + 123392446 I
e cebCap1.NW_016107339v1    14005924 1 +  15232693 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e aotNan1.NW_018508875v1      248841 1 +    446445 I
e calJac3.chr4             138621317 1 - 171630274 I
e saiBol1.JH378315            179661 1 +   1154217 I
e chlSab2.chr17             39629832 0 +  71996105 C
e otoGar3.GL873550          15316074 1 -  18854210 I
e dasNov3.JH569424            469534 294 +    935526 I

a score=6228.000000
s hg38.chr6_KI270758v1_alt     16588 1 +     76752 G
s panTro5.chr6             142716343 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867948 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385695 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678616 1 - 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302660 1 - 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462975 1 + 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179199 1 +    407600 G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51654 1 +    463628 G
i cerAty1.NW_012003702v1   C 0 C 0
s manLeu1.NW_012101600v1       49970 1 -    115496 G
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680379 1 -   1936607 G
i colAng1.NW_012115555v1   C 0 C 0
s otoGar3.GL873550          15316075 1 -  18854210 G
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70366164 1 -  72498081 G
i canFam3.chr12            C 0 C 0
e mm10.chr17                34347414 139 +  94987271 I
e micMur3.chr6               4436033 268 + 123392446 I
e cebCap1.NW_016107339v1    14005924 1 +  15232693 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e aotNan1.NW_018508875v1      248841 1 +    446445 I
e calJac3.chr4             138621317 1 - 171630274 I
e saiBol1.JH378315            179661 1 +   1154217 I
e chlSab2.chr17             39629832 0 +  71996105 C
e dasNov3.JH569424            469534 294 +    935526 I

a score=65552.000000
s hg38.chr6_KI270758v1_alt     16589 5 +     76752 GTGAG
s panTro5.chr6             142716344 5 - 175400573 GTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867949 5 - 173848474 GTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385696 5 +   2807050 GTGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678617 5 - 122973662 GTGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302661 5 - 172585720 GTGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462976 5 + 170955103 GTGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179200 5 +    407600 GTGAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51655 5 +    463628 GTGAG
i cerAty1.NW_012003702v1   C 0 C 0
s manLeu1.NW_012101600v1       49971 5 -    115496 GTGAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680380 5 -   1936607 GTGAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621318 5 - 171630274 GTGAG
i calJac3.chr4             I 1 C 0
s saiBol1.JH378315            179662 5 +   1154217 GTGAG
i saiBol1.JH378315         I 1 C 0
s cebCap1.NW_016107339v1    14005925 5 +  15232693 GTGAG
i cebCap1.NW_016107339v1   I 1 C 0
s aotNan1.NW_018508875v1      248842 5 +    446445 GTGAG
i aotNan1.NW_018508875v1   I 1 C 0
s otoGar3.GL873550          15316076 5 -  18854210 GTGAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70366165 5 -  72498081 GTGAG
i canFam3.chr12            C 0 C 0
e mm10.chr17                34347414 139 +  94987271 I
e micMur3.chr6               4436033 268 + 123392446 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e chlSab2.chr17             39629832 0 +  71996105 C
e dasNov3.JH569424            469534 294 +    935526 I

a score=1429505.000000
s hg38.chr6_KI270758v1_alt     16594 124 +     76752 TCCATTGTTCAACATCAGTCATGACATGTCTGCTTAGGGTGGATTTTCCATACTGTTGTGCTGGGGTCTTGTCCTGCCATGCAGCCGTTCTCACAAGTTATGAACACAAATATTCCATACATTA
s panTro5.chr6             142716349 124 - 175400573 TCCATTGTTCAACATCAGTCATGACATGTCTGCTTAGGGTGGATTTTCCATACTGTTGTGCTGGGGTCTTGTCCTGCCATGCAGCCGTTCTCACAAGTTATGAACACAAATATTCCATACATTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140867954 124 - 173848474 TCCATTGTTCAACATCAGTCATGACATGTCTGCTTAGGGTGGATTTTCCATACTGTTGTGCTGGGGTCTTGTCCTGCCATGCAGCCGTTCTCACAAGTTATGAACACAAATATTCCATACATTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385701 124 +   2807050 TCCATTGTTCAACATCAGTCATGACACGTCTGCTTAGGGTGGATTTTCCATACTGTTGTGCTGCGGTCTTATCCTGCCATGCAGCCGTTCTCACAAGTTATGAACACAAATATTCCATACATTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678622 124 - 122973662 TCCATTGTTCAACATCAGTCATGACACATCTGCTTAGGGTGGATTTTCCACACTGTTGTGCTGAGGTCTTATCCTGCCATGCAGCCGTTCTCACAAGTTATGAACACAAATATTCCATATATTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302666 124 - 172585720 TCCACTGTTCAACATCAGTCATGACACGTCTGCTTAGGGTGGATTTTCCACACTGTTGTGCTGAGGTCTTATCCCGCCATGCAGCCGTTCTCACAAGTTATGAACACAAATATTCTATACTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138462981 124 + 170955103 TCCACTGTTCAACATCAGTCATGACACATCTGCTTAGGGTGGATTTTCCACACTGTTGTGCTGAGGTCTTATCCTGCCATGCAGCCGTTCTCACAAGTTATGAACACAAATATTCTATACTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179205 124 +    407600 TCCACTGTTCAACATCAGTCATGACACGTCTGCTTAGGGTGGATTTTCCACACTGTTGTGCTGAGGTCTTATCCCGCCATGCAGCCGTTCTCACAAGTTATGAACACAAATATTCTATACTTTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51660 124 +    463628 TCCACTGTTCAACATCAGTCATGACACGTCTGCTTAGGGTGGATTTTCCACACTATTGTGCTGAGGTCTTATCCTGCCATGTAGCCGTTCTCACAAGTTATGAACACAAATATTCTATACTTTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629832 124 +  71996105 TCCACTGTTCAACATCAGTCATGACACGTCTGCTTAGGGTGGATTTTCCACACTGTTGTGCTGAGGTCTTATCCTGCCATGCAGCCGTTCTCACAAGTTATGAACACAAATATTCTATACTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       49976 124 -    115496 TCCACTGTTCAACATCAGTCATGACACGTCTGCTTAGGGTGGATTTTCCACACTATTGTGCTGAGGTCTTATCCTGCCATGCAGCCGTTCTCACAAGTTATGAACACAAATATTCTATACTTTA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680385 119 -   1936607 TCCACTGTTCAACATCAGTCATGACACATCTGCTTAGGGTGGATTTTCCACACTGTTGTGCTGAGGTCTTATCCTGCCATACAGCCGTTCTCACAAGTTATGAACACAAATATTCTA-----TA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621323 124 - 171630274 TCCATTGTTCAACATCAGTCATAACACGTCTACTTAGAGTGGATTTTCCACACTGTTGGGCTGAGGTCTTATCCCGCCATGCAGCCATCCACACAAGTAATGAACACAAAAACTCTGTACATTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179667 124 +   1154217 TCCATTGTTCAATATCAGCCATAACACGTCTACTTAGAGTGGATTTTCCACACTGTTGCGCTGAGGTCTTATCCTGCCATGCAGCCATCCACACAAGTCATGAACACAAATACTCTATACATTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14005930 124 +  15232693 TCCATTGTTCAATATCAGTCATAACATGTCTACTTAGAGTGGATTTTCCACACTGTTGTTCAGAGGTCTTATCCTGCCATGCAGCCATCCATACAAGTAATGAACACAAATACTCTATACATTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      248847 124 +    446445 TCCATTTTTCAATATCAGTCGTAACACATCTACTTAGAGTGGATTTTCCACACTGTTGCGCTGAGGTCTTATCCTGCCATGCAGCCATCCACACAAGTAATGAACACAAATACTCTATACATTA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15316081 123 -  18854210 TCCATCTTTAAATGCCAGTCATAACACGTTTACTTAGATTTGATTTT-CACACTGTTATCCCGAGGTCTTATCTTGCCACACAGCTGCCCTCACAAATCATGAGGGCAAACACCCTTCACATTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70366170 123 -  72498081 TTTGCTGTTTAATATCAGTCATGACACATATGCTCCTGGTGGATTTTCTATACTGTTGTGCTGAGATATTATCCTGCTCCACAGCCACCGTCACAAATCATGAG-GTTTTTTCCCTACACATTA
i canFam3.chr12            C 0 C 0
e mm10.chr17                34347414 139 +  94987271 I
e micMur3.chr6               4436033 268 + 123392446 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I
e dasNov3.JH569424            469534 294 +    935526 I

a score=1554721.000000
s hg38.chr6_KI270758v1_alt     16718 131 +     76752 CTGATT--ATCTGATCGCATCAAAGGGCTTTGAACACACTGTGGCATTAACTCCTAGATCGCTAGAAAGAGACCTACAGCATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTTTCCTGAAAGTTAAAGAGTCA
s panTro5.chr6             142716473 131 - 175400573 CTGATT--ATCTGATCACATCAAAGGGCTTTGAACACACTGTGGCATTAACTCCTAGATCGCTAGAAAGAGACCTACAGCATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTTTCCTGAAAGGTAAAGAGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140868078 131 - 173848474 CTGATT--ATCTGATCACATCAAAGGGCTTTGAACACACTGTGGCATTAACTCCTAGATCGCTAGAAAGAGACCTACAGCATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTTTCCTGAAAGGTAAAGAGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385825 131 +   2807050 CTGATT--ATCTGATCACATCAAAGGGCTTTGAACACACTGTGGCATTAACTCCTAGATCGCTAGAAAGAGACCTACAGCATGG-TCTC-TTCTGCAATTTTTCAGGAATACCTTTCCTGAAAGGTAAAGAGTCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678746 131 - 122973662 CTGATT--ATTTGATCACATCAAAGGGCTTTGAACGCACTGTGGCATTAACGCCTAGATCACTAGAAAGAGACCTACAGCATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTTTCCTGAAAGGTAAAGAGTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302790 131 - 172585720 CTGATT--ATCTGATCACATCAAAGGGCTCTGAACATACTGTGACATTAACTCCTAGATCACTAGAAAGAGACCCACAGTATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTTTCCCGAAAAGTAAACAGTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138463105 131 + 170955103 CTGATT--ATCTGATCACATCAAAGGGCTCTGAACATACTGTGACATTAACTCCTAGATCACTAGAAAGAGACCCACAGTATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTTTCCCGAAAGGTAAACAGTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179329 131 +    407600 CTGATT--ATCTGATCACATCAAAGGGCTCTGAACATACTGTGACATTAACTCCTAGATCACTAGAAAGAGACCCACAGTATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTCTCCTGAAAAGTAAACAGTCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51784 131 +    463628 CTGATT--ATCTGATCACATCGAAGGGCTCTGAACACACTGTGACATTAACTCCTAGATCACTAGAAAGAGACCCACAGCATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTTTCCTGAAAGGTAAACAGTCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39629956 131 +  71996105 CTGATT--ATCTGATCACATTAAAAGGCTCTGAACATACTGTGACATTAACTCCTAGATCACTAGAAAGAGACCCACAGCATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTTTCCTGAAAGGTAAACAGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       50100 131 -    115496 CTGATT--ATCTGATCACATCGAAGGGCTCTGAACACACTGTGACATTAACTCCTAGATCACTAGAAAGAGACCCACAGCATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTTTCCTGAAAGGTAAACAGTCA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680504 131 -   1936607 CTGATT--ATCTGATCACATCAAAGGGCTCTGAACACACTGTGACATTAACTCCTAGATCACTAGAAAGAGACCCACAGTATGG-TCTC-TCCTGCAATTTTTCAGGAATACCTTTCCTGAAAGGTAAACAGTCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621447 131 - 171630274 CTAATT--ATCTGATCATATCAAAGGGCTCTGAACATACTGGGACATTAACTCCTAAATCACTAAAAGGAGACCCACAGCGTGG-TCTC-TCTTACAATTTTTCAGGAATGCCTTTACTGAAAGGTAACGAGTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179791 131 +   1154217 CTGATT--GTCTGATCATATCAAAGGGCTCTGAACATACTGTGACATTAACTCCTAAATCACTAAAAGGAGACCCACAGCGTGG-TCTC-TCTTATGATTTTTCAGAAATACCTTTCCTGAAAGGTAACGAGTCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14006054 130 +  15232693 CTGATT--ATCTGATCATATCAAAGGGCTCTGAACATACTGTGACATTAACTCCTAAA-CACTAAAAGGAGACCCACAGTGTGG-TCTC-TCTTACAGTTTTTCAGGAATACCTTTCCTGAAAGGTAACGAGTCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      248971 130 +    446445 CTGATT--ATCTGAGCATATCAAAGGGCTCTGAACATACTGTGACATTAAC-CCTAAATCACTAAAAGGAGACCCACAATGTGG-TCTC-TCTTACAATTTTTCAGGAATACCTTTCCTGAAATGTAACGAGTCA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15316204 123 -  18854210 TCAGTT--ATCTGATCACATCAAAGGGTTCTGAACACCCTCTGACAATAACCCCTAGATCATTAAGAGGAGGCCCACAGCACGATTCTA-TCCTAAAATTTTTCAGAAGTACATTTCCTAGAAGCT---------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70366293 123 -  72498081 CCGATT--ATTTGATCGGATCTAAGGACTTTGAACACCCTCTCACATTGACTTCTAGATCATGTGGAAGAGACTCACAGCACAG-TTTTGCCCTAAGATTGTTAAGGAATACACTTTCTGGATGCA---------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469828 117 +    935526 CTGACTTGGTCTGATCGCATCCAA-GGCTTTGAACATACTCTGGTGTTGGCTCCTAGATCACTAAGAGGAGACCCACAGCATGG-TGAC-------AGCTGGTAAGGAATACATGTCCTGGAAGCA---------
i dasNov3.JH569424         I 294 C 0
e mm10.chr17                34347414 139 +  94987271 I
e micMur3.chr6               4436033 268 + 123392446 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I

a score=16511.000000
s hg38.chr6_KI270758v1_alt     16849 1 +     76752 G
s panTro5.chr6             142716604 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140868209 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385956 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678877 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302921 1 - 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138463236 1 + 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179460 1 +    407600 G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51915 1 +    463628 G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39630087 1 +  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       50231 1 -    115496 G
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680635 1 -   1936607 G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621578 1 - 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179922 1 +   1154217 G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14006184 1 +  15232693 G
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      249101 1 +    446445 G
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4436301 1 + 123392446 G
i micMur3.chr6             I 268 C 0
s otoGar3.GL873550          15316327 1 -  18854210 G
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70366416 1 -  72498081 A
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469945 1 +    935526 G
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347414 139 +  94987271 I
e proCoq1.NW_012150019v1       82131 338 +   1371726 I

a score=582077.000000
s hg38.chr6_KI270758v1_alt     16850 38 +     76752 GAGAATGGGCCAGATGAGAG-CCTATGGTATCAGTCTGT
s panTro5.chr6             142716605 38 - 175400573 GAGAATGGGCCAGATGAGAG-CCTATGGTATCAGTCTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140868210 38 - 173848474 GAGAATGGGCCAGATGAGAG-CCTATGGTATCAGTCTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385957 38 +   2807050 GAGAATGGGCCAGATGAGAG-CCTATGGTATCAGTCTGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678878 38 - 122973662 GAGAATGGGCCAGGTGAGAG-CCTATGGTATCAGTCTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302922 38 - 172585720 GAGAATGGGCCAGATGAAAG-CCTATGGTATCAGTCTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138463237 38 + 170955103 GAGAATGGGCCAGATGAAAG-CCTATGGTATCAGTCTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179461 38 +    407600 GAGAACGGGCCAGATGAAAG-CCTATGGTATCAGTCTGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51916 38 +    463628 GAGAACGGGCCAGATGATAG-CCTATGGTATCAGTCTGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39630088 38 +  71996105 GAGAACGGGCCAGATGAAAG-CCTATGGTATCAGTCTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       50232 38 -    115496 GAGAACGGGCCAGATGATAG-CCTATGGTATCAGTCTGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680636 38 -   1936607 GAGAATGGGCCAGATGATAG-CCTATGGTATCAGTCTGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621579 38 - 171630274 GAGAATGGGCCTGATGAGAG-TCTATGGTATCAGTTTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179923 38 +   1154217 GAGAATGGGCCAGATGAGAG-TCTATGGTATCAGTCTGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14006185 38 +  15232693 GAGAATGGGACAGATGAGAG-TCTATGGTATCAGTCTGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      249102 38 +    446445 GAGAATGGGCCAGATGAGAG-TCTATGGTATCAGTCTGT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4436302 39 + 123392446 GAGAACAGGCCAGATGAGAGTTCTACAGTATCGGTCCGT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       82469 39 +   1371726 GAGAATGGGCCAGATGAGAGTTCTACAGTATCGGTCCGT
i proCoq1.NW_012150019v1   I 338 C 0
s otoGar3.GL873550          15316328 39 -  18854210 AAGAATGGGCTAGATTAGAATTCTACAGTATCAGTTTGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70366417 39 -  72498081 AGGAATGGGCCAGATGAGAGCTTTATAGTATCAATCTCC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            469946 39 +    935526 GGGAGTGGGTCAAATGACAGCTCTTAAATACCAGTCTAT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34347414 139 +  94987271 I

a score=6825623.000000
s hg38.chr6_KI270758v1_alt     16888 422 +     76752 GCTAAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAACCAT---GTATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTTGTTCTTAAATGGTGCTTGAGAAAAACATGGTAAATTCAAAGACA---------------T---------------TTCATATATTATAATAGCATCT-TCAATCCAAGTTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAGAACACTGATTGGTTCTTCTTGTGAGATTACTAAATTTGGGACACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCCTATTTGGACAGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATGTCAAATGG
s panTro5.chr6             142716643 422 - 175400573 GCTAAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAACCAT---GTATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTTGTTCTTAAATGGTGCTTGAGAAAAACATGGTAAATTCAAAGACA---------------T---------------TTCATATATTATAATAGCATCT-TCAATCCAAGTTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAGAACACTGATTGGTTCTTCTTGTGAGATTACTAAATTTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCCTATTTGGACAGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATGTCAAATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140868248 422 - 173848474 GCTAAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAACCAT---GTATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTTGTTCTTAAATGGTGCTTGAGAAAAACATGGTAAATTCAAAGACA---------------T---------------TTCATATATTATAATAGCATCT-TCAATCCAAGTTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAGAACACTGATTGGTTCTTCTTGTGAGATTACTAAATTTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCCTATTTGGACAGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATGTCAAATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2385995 422 +   2807050 GCTGAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAACCAT---GTATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTTGTTCTTAAATGGTGCTTGAGAAAAACATGGTAAATTCAAAGACA---------------T---------------TTCATATATTATAATAGCATCT-TCAATCCAAGTTGTTGCTCAGCGACTTATGACACTGTTTAGTCCTAGAACACTGATTGGTTCTTCTTGTGAGATTACTAAATTTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTAATAGGAAAGAAGTTCCTATTTGGACAGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAGAGGCACCTGAATGAGGACTTCTTGGTGATGTCAAATGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45678916 422 - 122973662 GCTGAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAACCAT---GTATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTTGTTCTTAAATGGCGCTTCAGAAAAACATGGTAAATTCAAAGACA---------------T---------------TTCATATATTATAATAGCACCT-TCAATCCACAGTGTTGCTCAGCAACTTATGACACTGTTTAGTCCGAAAACACTGATTGGTTCTTCTTGTGAGATTACTAAATTTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCCTATTTGGACAGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAGTGAGGACTTCTTGGTGATGTCAAATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139302960 422 - 172585720 GCTGAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAACCAT---GTATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTCGTTCTTAAATGGTGCTTAAGAAAAACATGGTAAACTCAAAGACA---------------T---------------TTCATCTATCATGACAGCACCT-TCAACCCAAGTTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAAAACACTGATTGGTTCTTCTTGTGAGATTACCAAATCTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCCTATTTGGACGGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATATTAAACGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138463275 422 + 170955103 GCTGAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAACCAT---GTATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTCGTTCTTAAATGGTGCTTAAGAAAAACATGGTAAACTCAAAGACA---------------T---------------TTCATCTATCATGACAGCACCT-TCAACCCAAGTTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAAAACACTGATTGGTTCTTCTTGTGAGATTACCAAATCTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCCTATTTGGACGGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATATTAAATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179499 422 +    407600 GCTGAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAACCAT---GTATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTCATTCTTAAATGGTGCTTAAGAAAAACATGGTAAACTCAAAGACA---------------T---------------TTCATCTATCATGACAGCACCT-TCAACCCAAGTTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAAAACACTGATTGGTTCTTCTTGTGAGATTACCAAATTTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCCTATTTGGACGGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATATTAAACGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       51954 422 +    463628 GCTGAGAGTTTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAATCAT---GTATAA-T-TTTCTATATCTGCCCTGTGCTGGCTGCCATAATGCCTTATTCTTAAATGGTGCTTAAGAAAAACATGGTAAACTCAAAGACA---------------T---------------TTCATCTATCATGACAGCACAT-TCAACCCAAGTTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAAAACACTGATTGGTTCTTCTTGTGAGATTACTAAATTTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCTTATTTGGACGGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATATTAAATGG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39630126 422 +  71996105 GCTGAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTCAGAGGCAAAACCAT---GTATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTCGTTCTTAAATGGTGCTTAAGAAAAACATGGTAAACTCAAAGACA---------------T---------------TTCATCTATCATGACAGCACCT-TCAACCCAAGTTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAAAACACTGATTGGTTCTTCTTGTGAGATTACTAAATTTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCCTATCTGGATGGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATATTAAATGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       50270 422 -    115496 GCTGAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAATCAT---GTATAA-T-TTTCTATATCTGCCCTGTGCTGGCTGCCATAATGCCTTATTCTTAAATGGTGCTTAAGAAAAACATGGTAAACTCAAAGACA---------------T---------------TTCATCTATCATGACAGCACAT-TCAACCCAAGTTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAAAACACTGATTGGTTCTTCTTGTGAGATTACTAAATTTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCTTATTTGGACGGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATATTAAATGG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      680674 422 -   1936607 GCTGAGAGTCTG--------ATCCTATGATTTAAGCTTGTCATCTCCTCTTTTAGAGGCAAAACCAT---GTATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTCGTTCTTAAATGGTGCTTAAGAAAAACATGGTAAACTCAGAGACA---------------T---------------TTCATCTATCATGACAGCACCT-TCAACCCAAGTTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAAAACACTGATTGGTTGTTCTTGTGAGATTACCAAATTTGGGAGACTTGAGA-AATGACTTTCAGTTCCCTTTCTCTGTGATAGGAGAGAAGTTCCTATTTGGACGGTGCTCATGGTTCTCCGTT-TTCTTTCAAACTCTAATTTCCTGTGTGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATATTAAATGG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138621617 422 - 171630274 GCTGAGAATCTG--------ATCCTATGATTTAAGCTTGTCGTCTTCTCTTTTAGAGGCAAAACAAC---ATATAA-T-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTTGTACTTAAATGATGTTGAAGAAATATACAGTAAATTCAAAGACA---------------T---------------TTCACATATCATAATAGCACCT-TCAACCCAAGGTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAAAACACTGATTGGTTCTTCCTGTGAGATTACTAAATATGGAAGACTTGAGA-AAAGGCTTTCACTTCCCTTTCTCTGTGATAGGAAAGATGTTCCTATTTGGACACTACTCATGGTTCTTCGTT-TTCTTTCAAACTCTAATTTCCTGTATGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCCTGGTGATATTAAATGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            179961 421 +   1154217 GCTGAGAGTCTG--------ATCCTTTGATTTAAGCTTGTCATCTTCTCTTTTAGAAGCAAAACAAC---ATATAA-C-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGCCTTGTTCTTAAATGGTGTTTAAGAAATATACAGT-AATTCAAAGACA---------------T---------------TTCACATATCATAATAGCACAT-TCAACCTAAGGTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAAAACACTGATTGGTTCTTCTTGCGAGATTACTAAATATGGGAGACTTGAGA-AAAGACTTTCACTTCCCTTTCTCTGCGATAGGAGAGACGTTCCTATTTGGACACTACTCATGGTTCTTCGTT-TTCTTTCAAACTCTAATTTCCTGTATGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATATTAAATGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14006223 422 +  15232693 GCTGAGAGTCTG--------AGCCTATGATTTAAGCTTGTCATCTTCTCTTTTAGAGGCAAAACGAC---ATATAA-C-TTTCTATGTCTGCCCTTTGCTGGCTGCCATAATGTCTCGTTCTTAAATGGTGTTTAAGAAATATACAGTAAATTCAAAGACA---------------T---------------TTTACGTATCATAATAGCACCT-TCAACCCAAGGTGTTGCTCAGCAACTTATGACACTGTTTTGTCCTGAAACACTGATTGGTTCTTCTTGTGAGATTACTAAATATGGGAGACTTGAGA-AAAGACTTTCACTTCCCTTTCTCTGTGATAGGAGAGACGTTCCTATTTGAACACTACTCATGGTTCTTCGTT-TTGTTTCAAACTCTAATTTCCTGTATGTTTGAGGGAATTTCCAAAGGCACCTGAATGAGGACTTCTTGGTGATATTAAATGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      249140 421 +    446445 GCTGAGAGTTTG--------ATCCTATGATTTAAGCTTGTCATCTTCTCTTTTAGAGGCAAAATGAC---ATATAA-C-TTTCTATGTCTGCCCGTTGCTGGCTGCCAT-ATGCCTTGTTCTTAAATGGTGTTTAAGAAATATACAGTAAATTCAAAGACA---------------T---------------TTCACATATCATAATAGCACCT-TCAACCCAGGGTGTTGCTCAGCAACTTATGACACTGTTTAGTCCTAAAACACTGATTGGTTCTTCTTGTGAGATTACTAAATATGGGAGACTTGAGA-AAAGACTTTCATTTCCCTTTCTCTGTGATAGGAGAGACGTTCCTATGTGGACACTACTCATGGTTCTTCGTT-TTCTTTCAAACTCTAATTTCCTGTATGTTTGAGGGAATTTCCAAAGGCACGTGAATGAGGACTTCTTGGTGATATTAAATGG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4436341 420 + 123392446 GCTGAGAGTCTG--------ATCCTGTGATTTAGGCTTGTCAT---CTCTTTCAGAGGCAAAACCGT---GTATAAGT-TTTCCGTGTCTACCCTTTGCTGGCCACCATAATGCCTTGTTCTTAAAAAGTGCTTAATAAATAAATGGGAAACTCAAAGACA---------------T---------------TTTACATGTCATAATAGCACCT-TTAACTCAAGGTGTTGCTCAGTAACTTATGATCTTGTTTAGTCCTAAAACACTGATTGGCTCTCCTGGTGAGATTACTAAATTTGGAAGACTTTAGA-AAAGACTTTCAGTTCCCATTCTCTGTAATTGGAGAGAAGTTTCTACTTGGACACGACTCGTGGTTCCCTATT-CTCTCCCAAACTCTAACTTCCTGTCTGTTTGAGGGAATTTCCGAGGGCGCCTGCATGAGGTCTTCCTGCTGATATCAAATGA
i micMur3.chr6             C 0 I 81
s proCoq1.NW_012150019v1       82508 420 +   1371726 GCTGAGAGTCTG--------ATCCTGTGATTTAGGCttgtcat---ctctttcagaggcaaaaccat---gtgcaatt-tttctgtgtctaccctttgctggctactataatgccttgttcttaaaaagtgcttaataaacaAATGGGAAACGCAAAGACA---------------T---------------TTTACATGTCATAATAGCATCT-TCAACCCAAGGTGTTGCTCAGTAACTTATGATATTGTTTAGTCCTAAAACACTGATTGGCTCTCCTGGTGAGATTACTAAATTTGGAAGACTTTAGA-AAAGACTTTCAGTTCCCTTTCTCTGTAACAGGAGAGAAGTTTCTATCTGGACACGACTCATGGTTCCCTGTT-CTCTCCCAAACTCTAACTTCCTGTGTGTTTGAGGGAATTTCTGAAGGTGCCTGAATGAGGTCTTCCTGGTGATATCAAATGG
i proCoq1.NW_012150019v1   C 0 I 424
s otoGar3.GL873550          15316367 410 -  18854210 GTTGAGAGTCTG--------ATTCTATGATTTAGGCTTGCTGT---CTCTTTCAAAGGCAAAATCAT---GTGAAACT-TTACTGGGTCTATCCTTTGCTGGCTACCATAATTCCTTGTCCTTAAGAAATGCATAATAAATATATGGCAAACTTGAAGACA---------------T---------------TTTACATGTCATAATAGCACCT-TCAACCCAAGGTGTTGCTCAGCGACTTATGATGTTGTTTAGTCCTAAAACACCAATTGGTTCTTCTAGTGACATTACTAAATTTGGGAGACTTTAG--AAAGACTTTCAGTTCCCTTCCTCCGTGGCAGGAGAGAAATTTCTATTTGGACACAA---GTGATTTGGACAT-TACTCCCAAG--CTAACTTCCTG--TGTTTG-GGGAGTTTCTGAAGGTACCTGAATGAGGTCTTCTTGGTG-TATTAAATGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34347553 388 +  94987271 GTCAAGAGGCTGATGCAACAATTCTGTGGTGCATGCTGGCC---TCCTTTTTCAGAGCCAAATCAAGCCAACACAA-T-TTT-TGCACCTATCTTTTGCTAGCTTCT-TAATGCCATGCTCTTGGCAAGTGT-----------ATGGTAAGTTTAA---------------------------------------------------GGTACCTCTAAATACACAGTGCTACTTAGCAACTTATGATGCTGCCGAGTTCCTGTCTGCTGATTGGTTCTGCTCATGAAATTATTAAACT----AGACTTCAGAGAATGACTTTCAGTTCCCCTTCTCTGTGAT-GGGGAGAAGTCTCTG---GCACACTGTTCGTGGTTTCCTGTT---CTCCCAAAGTATAGCTTCCTGTGTGTCTGAGGGGATTTCTGAAGCCACCTGAATAATGTATCCTTGGTGACATTAAACCG
i mm10.chr17               I 139 C 0
s canFam3.chr12             70366456 436 -  72498081 GCTGAGAGTCTG--------GTCCTATGATTTAGGCTTGTCATCTCCTCTCTCAGAGGAAAAAACAA---GTATAA-TGTCTGTATGCCTGCCCTTTGCTAGCTATCATACTGACTGGTTCTTATAAGCAGCTCAATGAGTATATGGTAAACTCAGAGACACTTTACAGAAAAATGT---------------TTTACTTGTCATAACAGCAACT-TCAACCTAAGGTGTTGCTCAGCAACTTATGATATGGCTTAATT-TAAAATACTGATTGGTTCTTCTCATGAGATTACCAAATTTGGGAGACTTTAGA-AAATACTTTCAGTTCCCTTTCTCCATGCTAGGAGAGAAGTTTCTATCTGGACACTACCCATGGTCTCCTGTTCTTTTCCCATATTCTAGCTTCCTA--TGTCTGAGGGGATTTCTGAAGGCACCTCAGTGAGGTATGAAAAGTGACATCAAATGG
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            469985 434 +    935526 GATGAGCGTCTG--------ATCCTATGACTTAGGCTAGTCATCTCCAACTTCAGTGGCAAAACCAA---GTGTGATT-TTTCTATGCCTACCCTATGCTGTCTTCCACAATGCCTGGTTTTTAGAAAGTATTCAAAAAACATATGATGAATTCAAAGGCA---------------TTTTATGGGAAGATAGTTCATGTATTGTAACAGACGCT-TCAACCCAAGGTGCTGCTTAGCAACTTACGAAATCTTTTA-CACTAAAGCACTGATTGGTTGT-CTCATGAAGTTACCAAATTTGGGAGATATTAGA-AAAGACTTTCAGTTCCTTTTCTCTGTGATAAGAAAGCAACTCCTATTTAGACTCTTC-CATGGTTCTCTCTT-CTCTCTCAAACTCTAGTTTCCTGTGTTTTTGAGGGAAGCTCTGAGGACACCTGAGTGGGGTCTT-TTGGTGGCATTAAATGG
i dasNov3.JH569424         C 0 C 0

a score=920184.000000
s hg38.chr6_KI270758v1_alt     17310 80 +     76752 TGACGAGACACTATAGCCATGagaattcagtcaagaaataggaatccctgtaat-cagtctaagcagaactg--------aa------tatatta
s panTro5.chr6             142717065 80 - 175400573 TGACGAGCCACTATAGCCATGagaattcagtcaagaaataggaatccctgtaat-cagtctaagcagaactg--------aa------tatatta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140868670 80 - 173848474 TGACGAGCCACTATAGCCATGagaattcagtcaagaaataggaatccctgtaat-cagtctaagcagaactg--------aa------tatatta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2386417 80 +   2807050 TGAGGAGCCACTATAGCCATGagaattcagtcaagaaataggaatccctgtaag-cagtctaagcagaactg--------aa------tatatta
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45679338 79 - 122973662 TGAGGAGCCACTACAGCCACGagaattcagtcaagaaat-ggaatccctgtaag-cagtctaagcagaactg--------aa------tatatta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139303382 80 - 172585720 GGAGGAGCCACtgtagccatgagaattcagtcaagaaacaggaatccctgtaag-cagtctaagcagaactg--------aa------tatacta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138463697 80 + 170955103 GGAGGAGCCGCtgtagccatgagaattcagtcaagaaacaggaatccctgtaag-cagtctaagcagaactg--------aa------tatacta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      179921 80 +    407600 GGAGGAGCCACtgtagccatgagaattcactcaggaaacaggaatccctgtaag-cagtctaagcagaactg--------aa------tatacta
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       52376 80 +    463628 GGAGGAGTCGCtgtagccatgagaattcagtcaagaaacaggaatccctgtaag-cagtctaagcagaactg--------aa------tatacta
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39630548 80 +  71996105 GGAGGAGCCGCtgtagccatgagaattcactcaggaaacaggaatccctgtaag-cagtctaagcagaactg--------aa------tatacta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       50692 80 -    115496 GGAGGAGTCGCtgtagccatgagaattcagtcaagaaacaggaatccctgtaag-cagtctaagcagaactg--------aa------tatacta
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681096 80 -   1936607 GGAGGAGCCGCtgtagccatgagaattcagtcaagaaacaggaatccctgtaag-cagtctaagcagaactg--------aa------tatacta
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622039 80 - 171630274 TGAGGAGCCACTATAGTCACGaggattcagtccacaaataggaatccctgcaag-cagtctaagcagaactg--------aa------tgtatta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            180382 80 +   1154217 TGAGGAGCCACTATAGCCATGagaattcagtccacaaataggaatccctgtaag-cagtctaagcagaaccg--------aa------tgtatta
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14006645 80 +  15232693 GGAGGAGCCACTATAGCCCTGagaattcagtccacaaataggaatccctgtaag-cagtctaagcagaactg--------aa------tgtatta
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      249561 80 +    446445 TGAGGAGCCACTATAGTCATGagaattcagtccacaaataggaatccctgtaag-cagtctaagcagaactg--------aa------tgtatta
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15316777 80 -  18854210 TGAGGATCCACAGCAAcagtcagagttcagatgggaaatagaaatccctgtaga-cacccttaacagaattg--------aa------tctatta
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34347941 49 +  94987271 TGGTGAGCTACTGT---CATGGG----------------------TCCTCCAGA-------AAACAGAATTG--------AA------TATGTTA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70366894 95 -  72498081 GGAGGAGCTACTGTACTAGTCATAGTTCAGTCTGAAAATAGAAGGCCTTGTAAGACACTCTAAATAGAATTGTTTGTTACAATTCTTCTGTATta
i canFam3.chr12            I 2 C 0
s dasNov3.JH569424            470419 78 +    935526 CGAGCAGTCACTGT-Ccagtcagagttcagt-aaggaatcgaagtccttggagg-tgtcctaagcagagctg--------ga------tctatga
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4436761 81 + 123392446 I
e proCoq1.NW_012150019v1       82928 424 +   1371726 I

a score=43177.000000
s hg38.chr6_KI270758v1_alt     17390 3 +     76752 cag
s panTro5.chr6             142717145 3 - 175400573 cag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140868750 3 - 173848474 cag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2386497 3 +   2807050 cag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45679417 3 - 122973662 cag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139303462 3 - 172585720 cag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138463777 3 + 170955103 cag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180001 3 +    407600 cag
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       52456 3 +    463628 cag
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39630628 3 +  71996105 cag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       50772 3 -    115496 cag
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681176 3 -   1936607 cag
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622119 3 - 171630274 cag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            180462 3 +   1154217 cag
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14006725 3 +  15232693 cag
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      249641 3 +    446445 cag
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       83352 3 +   1371726 cag
i proCoq1.NW_012150019v1   I 424 C 0
s otoGar3.GL873550          15316857 2 -  18854210 -tg
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34347990 3 +  94987271 CAA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70366989 3 -  72498081 gag
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            470497 3 +    935526 cat
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4436761 81 + 123392446 I

a score=2477696.000000
s hg38.chr6_KI270758v1_alt     17393 177 +     76752 ggaattagcccttaaaactg-ttagggggtctggaggagcacaagtcactgcagacccctaattttaaaagatcaggaacccacaggaagcc-----tctgctgatgTTGCAGATCCTCTAGAGCCCCTA-GG-----AGTAA-ATGTC-----TTTAGAACACAA-----GGCTGC-TGCC-AAAACTCATGTCTGTGAAA
s panTro5.chr6             142717148 177 - 175400573 ggaattagcccttaaaactg-ttagggggtctggaggagcacaagtcactgcagacccctaattttaaaagatcaggaacccacaggaagcc-----tctgctgatgttgcagatcctgtagAGCCCCTA-GG-----AGTAA-ATGTC-----TTTAGAACACAA-----GGCTGC-TGCC-AAAACTCATGTCTGTGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140868753 177 - 173848474 ggaattagcccttaaaactg-ttagggggtctggaggagcacaagtcactgcagacccctaattttaaaagatcaggaacccacaggaagcc-----tctgctgatgttgcagatcctgtagAGCCCCTA-GG-----AGTAA-ATGTC-----TTTAGAACACAA-----GGCTGC-TGCC-AAAACTCATGTCTGTGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2386500 177 +   2807050 ggaattcacccttaaaactg-ttagggggtctggaggagcacaactcactgcagacccctaattttaaaagatcaggaacccacaggaagcc-----tctgctgatgTTGCAGATCCTCTAGAGCCCCTA-GG-----AGTAA-ATGTC-----TTTAGAACACAA-----GGCTGC-TGCC-AAAACTCATGTCTGTGAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45679420 177 - 122973662 ggaattagcccttaaaactg-ttagggggtctggaggagcacaagtcactgcagacccctaattttaaaagatcaggaacccacaggaagcc-----tctgctgatgCTGCAGATCCTCTAGAGCCCCTA-GG-----AGTAA-ATGTC-----TTTAGAACACAA-----GGCTGC-TGCC-AAAACTCATGTCTGTGAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139303465 177 - 172585720 ggaattagcccttaaaactg-ttagggggtctggaagagcacaggtcagtgcagacccctaactttaaaagatcaggaacccctaggaagcc-----tctgctgatgttgcagatcctctagcaccCCTA-GG-----AGTAA-ATGTC-----TTTAGGACACAA-----GGCTGC-TGCC-AAAACTCATGTCTATGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138463780 177 + 170955103 ggaattagcccttaaaactg-ttagggggtctggaagagcacaagtcagtgcagacccctaactttaaaagatcaggaacccctaggaagcc-----tctgctgatgttgcagatcctctagcaccccta-gg-----agtaa-atgtc-----tttaggacacaa-----ggctgc-tgcc-aaaactcatgtctgtgaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180004 177 +    407600 ggaattagcccttaaaactg-ttagggggtctggaagagcacaagtcagtgcagacccctaactttaaaagatcaggaacccctaggaagcc-----tttgctgatgttgcagatcctctagcaccCCTA-GG-----AGTAA-ATGTC-----TTTAGGACACAA-----GGCTGC-TGCC-AAAACTCATGTCTATGAGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       52459 161 +    463628 ggaattagcccttaaaactg-ttagggggtctagaagagcacaagtcagtgcagacccctaactttaaaagttcaggaacccctaggaagcc-----tctgctgatgTTGCAGATCCTCTGGCGCCCCTA-GG-----AGTAA-ATGTC-----TTTAGGATACAA-----GGCTG------------------CTATGAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39630631 177 +  71996105 ggaattagcccttaaaactg-ttagggggtctggaagagcacaagtcagtgcagacccctaactttaaaagatcaggaacccctaggaagcc-----tctgctgatgttgcagatcctctggcgccccta-gg-----agtaa-atgtc-----tttaggacacaa-----ggctgc-tgcc-aaaactcatgtctgtgaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       50775 161 -    115496 ggaattagcccttaaaactg-ttagggggtctggaagagcacaagtcagtgcagacccctaactttaaaagttcaggaaCCCCTAGGAAGCC-----TCTGCTGATGTTGCAGATCCTCTGGCGCCCCTA-GG-----AGTAA-ATGTC-----TTTAGGATACAA-----GGCTG------------------CTATGAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681179 177 -   1936607 ggaattagcccttaaaactg-ttagggggtctggaagagcacaagtcagtgcagacccctaactttaaaagatcaggaacccctaggaagcc-----tttgctgatgttgcagatcctctagcgccCCTA-GG-----AGTAA-ATGTC-----TTTAGGACACAA-----GGCTGC-TGCC-AAAACTCATATCTGTGAAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622122 178 - 171630274 ggaattatcccttaaaattt-ttaaagggtccggaggagcacaagtcagtgcagacccctaactttaaagggtcaggaacccataagaagcc-----tctgctgaagttgcagttcccctagagcccctaggg-----agtaa-atgtc-----tgtagaatgcaa-----ggctgc-ggcc-agaactcatgtctgTGGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            180465 178 +   1154217 ggaattatcccttaaatctg-ttaaagagtctggaggagcacaagtcagtgcagacccctaattttaaagggtcaggaaccaataagaagcc-----tctgctgatgTTGCAGATCCCCTAGGGCCCCTAGGG-----AGTAA-ATGTC-----TTTAGAACACAA-----GGCTGC-TGCC-AAAACTCATGTCTGTGAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14006728 179 +  15232693 ggaattatcccttaaaactg-ttaaagggtccagaggagcacaagtcagtgcagacccctaactttaaagggtcaggaaCCCATAAGAAGCC-----TCTGCTACTGTTGCAGATCCCCTAGAGCCCCTAGGG-----AGTAA-ATGTC-----TTTAGAACGCAA-----GGCTGC-TGCCAAAAACTCATGTCTGTGAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      249644 178 +    446445 ggaattatcccttaaaactg-ttaaagggcccggaggagcacaagtcagtgcagacccctaactttaaagggtcaggaGCTCATAAGAAGCC-----TCTGCTGATGTTGCAGATCCCCTAGAGCCCCTAGGG-----AGTAA-ATGTC-----TTTAGAACGCAA-----GGCTGc-tgcc-aaaactcatgtctgtgaaa
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4436842 184 + 123392446 agaatcatcccttaaaaccg-ttaggaagcctggaggagcACAAGCCAGTGCAGATCCCCAACGTCACAAGGTCAGGAGCCCGCTGGAAGCTTGACATCTGCTGATGTCACGGCTCCTCTAGAGCCCTCAGGG-----GGTGGCATGTC-----TTGGGAACACAA-----GGCTGC-TGCC-AAAACTCACGTCTGTGAAA
i micMur3.chr6             I 81 I 17
s proCoq1.NW_012150019v1       83355 177 +   1371726 ggaattatcccttaaaaccg-ttaggaagcctggaggagcacgagtcagtgcagacccctaacttcacaaggtcaggaacccacaggaagc------tctgctgatgtcgcagctcctctagagtcctcaggg-----agtggcatgtc-----ttgggaacacaa-----ggctgc-tgcc--aaactcacgtctgtgaaa
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15316859 167 -  18854210 ggaattgtcccttaaaactg-ttaggaagcttggaggaactcaagtcagcgcagatccctagctttaaaaggtcaggaacccaggggaagc------tctgctgatgtcacagctcctccaga----------------ctgaaatgTC-----TTGGGAACACTA-----GGCTGA-TCCC-AAAACTCATGTCTGTGAAA
i otoGar3.GL873550         C 0 I 3
s mm10.chr17                34347993 179 +  94987271 -GAAGTATAGCTTAA-------------GGCTGGCAGAGCACTGGTCAGGGTCGACTTTTAATCTAAAGTGGTCAGTGGCCTCTGGGAAGTC------CCGCTGATGTCATAGTTTCATCAAAGCCCACA-GGACACAAGGGA-ACATCATCTGCTGAGGACGTCACCAATGCCTGCTTGCC-AATGTTCAAGCCTGTGACA
i mm10.chr17               C 0 I 1
s canFam3.chr12             70366992 177 -  72498081 ggaattataactttaaagtgtttaggaagcctgaaagagcaaaggtcagtgcagactcctaactccaa--gatcaggaacctatgggaagct-----gctgcggacatcacagctcctctacagctccaggga-----aagga-aagtc-----ttggcaatacaa-----ggctgt-tccc-aagagtcctgtccgtgaag
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            470500 159 +    935526 gggtttacacctcaaagccg-ttaggaagtcttgaggaacagaagccaatgcagacccctaacttgaagatgccaggaatctgtaggaagct-----gctgctgacgtctcCCCTCCTCTAGAGCCCCAA-GG-----G-----ATGTG----------------G-----AGCTGC-TGCC----ACTCGTGTGTGTGAAA
i dasNov3.JH569424         C 0 C 0

a score=86632.000000
s hg38.chr6_KI270758v1_alt     17570  9 +     76752 --CCTGTCCCT-
s panTro5.chr6             142717325  9 - 175400573 --CCTGTCCCT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140868930  9 - 173848474 --CCTGTCCCT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2386677  9 +   2807050 --CCCGTCCCT-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45679597  9 - 122973662 --CCTGTCCCT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139303642  9 - 172585720 --CCTGTCCCT-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138463957  9 + 170955103 --cctgtccct-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180181  9 +    407600 --CCTGTCCCT-
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       52620  9 +    463628 --CCTGTCCCT-
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39630808  9 +  71996105 --cctgtccct-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       50936  9 -    115496 --CCTGTCCTT-
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681356  9 -   1936607 --CCTGTCCCT-
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622300  9 - 171630274 --CCTGTGCCT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            180643  9 +   1154217 --CCTGTGCCT-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14006907  9 +  15232693 --CCTGTGCCT-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      249822  9 +    446445 --cctgtgcct-
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       83532  9 +   1371726 --cgtgttcac-
i proCoq1.NW_012150019v1   C 0 I 5
s otoGar3.GL873550          15317029  6 -  18854210 --CATGTT----
i otoGar3.GL873550         I 3 I 8
s mm10.chr17                34348173  9 +  94987271 --CTTGCTCAC-
i mm10.chr17               I 1 C 0
s canFam3.chr12             70367171  9 -  72498081 --cttgtgtcc-
i canFam3.chr12            I 2 I 7
s dasNov3.JH569424            470659 12 +    935526 CCAATGTCCACT
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4437026 17 + 123392446 I

a score=3900019.000000
s hg38.chr6_KI270758v1_alt     17579 301 +     76752 --Gagatggctgtggcctaacttccacct----cccaaatctcataatactgagtttcactgg-agaaatgtattccatgttcagaaacctg-gggcagagcaagcctgagagatgtaatATTCTTACATCTATTCCCAAAGATACAGACAGGATCAGAGAAGCAAATGGAAATTTTAC-AAAAATTACTAA---A---TGCAAATA--------TGTGTGTCTATG------TTTGTGTG------------------------TATATCCACCATA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAAACCAGAGGACATATTC-TTCTGGAGAAATAAGTTAGGGC-----------------TT
s panTro5.chr6             142717334 301 - 175400573 --Gagatggctgtggcctaacttccacct----cccaaatctcataatactgagtttcactgg-agaaatgtattccacgttcagaaacctg-gggcagagcaagcctgagagatgtaatattcttacatctattcccaaagatacagacaggatcagagaagcaaatggaaatTTTAC-AAAAATTACTAA---A---TGCAAATA--------TGTGTGTCTATG------TTTGTGTG------------------------TATATCCACCATA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAAACCAGAGGACATATTC-TTCTGGAGAAATAAGTTAGGGC-----------------TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140868939 301 - 173848474 --Gagatggctgtggcctaacttccacct----cccaaatctcataatactgagtttcactgg-agaaatgtattccacgttcagaaacctg-gggcagagcaagcctgagagatgtaatattcttacatctattcccaaagatacagacaggatcagagaagcaaatggaaatTTTAC-AAAAATTACTAA---A---TGCAAATA--------TGTGTGTCTATG------TTTGTGTG------------------------TATATCCACCACA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAAACCAGAGGACATATTC-TTCTGGAGAAATAAGTTAGGGC-----------------TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2386686 301 +   2807050 --Gagatggctgtggcctaacttccacct----cccaaatctcataatactgagtttcactgg-agaaatgtattccacattcagaaaccta-gggcagagcaagcctgagagatgtaatattcttacgtctattccctaagatacagacaggatcagagaagaaaatggaaatTTTAC-AAAAATTACTAA---A---TGCAAATA--------TGTGTGTCTATG------TTTGTGTG------------------------TATATCCACCATA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAAACCAGAGGACATATTC-TTCTGGAGAAATAAGTTAGGGC-----------------TT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45679606 300 - 122973662 --Gagatggctgtggcctgacttccacct----cccaaatctcataatactgagttgaactgg-agaaatgtattccacattcagaaacctg-gggcagagcaagcctgagagatgtaatattCTTACAT-TATTCCCGAAGATACAGACAGGACCAGAGAAGCAAATGGAAATTTTAC-AAAAATTACTGA---A---TGCGAATA--------TGTGTGTCTGTG------TTTGTGTG------------------------TATATCCACCATA------GATCACTCTGGTTC---T-CCCCACGGCGCCAAGTCTAAAAGCAGAGGACATATTC-TTCTGGAGAAATAAGTTAGGGC-----------------TT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139303651 301 - 172585720 --Gagatggctgaggcctaacttccgcct----cccaaatctcataatactga-tttcactgg-agaaatgtattccacattcagaaacctg-gggcagaggaaacctgggagaagtaatattctttcttctattccttaagatatggacaggaccagagaagcaaatggaaatTTTACAAAAAATTACTAA---A---TGCACATA--------TGTGTGTCTGTG------TTTGTGTG------------------------TATATCCACCACA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAATCCAGAGGATACATTC-TTCTGGAGAAATAGGTTAGGGC-----------------TT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138463966 301 + 170955103 --gagatggctgaggcctaacttccccct----cccaaatcccataatactgagtttcactgg-agaaatgtattccacattcagaaacctg-gggcagagaaaacctgggagaagtcatattcttacttctattccttaagatatggacaggaccagagaagcaaatggaaatTTTAC-AAAAATTACTAA---A---TGCACATA--------TGTGTGTCTGTG------TTTGTGTG------------------------TATATCCACCACA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAATCCAGAGGACACATTC-TTCTGGAGAAATAGGTTAGGGC-----------------TT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180190 301 +    407600 --Gagatggctgaggcctaacttccgcct----cccaaatctcataatactga-tttcactgg-agaaatgtattccacattcagaaacctg-gggcagaggaaacctgggagaagtaatattctttcTTCTATTCCTTAAGATATGGACAGGACCAGAGAAGCAAATGGAAATTTTACAAAAAATTACTAA---A---TGCACATA--------TGTGTGTCTGTG------TTTGTGTG------------------------TCTATCCACCACA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAATCCAGAGGACACATTC-TTCTGGAGAAATAGGTTAGGGC-----------------TT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       52629 301 +    463628 --Gagatggctgtggcctaacttccgcct----cccaaatctcataatactgagtttcactgg-agaaatgtattccacattcagaaacctg-gggcagagcaaacctgggagaagtaatattCTTACTTCTATTGCCTAAGATATGGACAGGACTAGAGAAGCAAAAGGAAATTTTAC-AAAAATTACTAA---A---TGCACATA--------TGTGTGTCTGTG------TTTGTGTG------------------------TATATCCACCACA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAATCCAAAGGACACATTC-TTCTGGAGAAATAGGTTAGGGC-----------------TT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39630817 301 +  71996105 --gagatggctgaggcctaacttccccct----cccaaatcccataatactgagtttcactgg-agaaatgtattccacattcagaaacctg-gggcagagcaaacctgggagaagtcatattcttacttctattccttaagatatggacaggaccagagaagcaaatggaaatTTTAC-AAAAATTACTAA---A---TGCACATA--------TGTCTGTCTGTG------TTTGTGTG------------------------TCTATCCACCACA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAATCCAGAGGACTCATTC-TTCTGGAGAAACAGGTTAGGGC-----------------TT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       50945 301 -    115496 --Gagatggctgtggcctaacttccgcct----cccaaatctcataatactgagtttcactgg-agaaatgtattccaccttcagaaacctg-gggcagagcaaacctgggagaagtaatattCTTACTTCTATTGCCTAAGATATGGACAGGACTAGAGAAGCAAAAGGAAATTTTAC-AAAAATTACTAA---A---TGCACATA--------TGTGTGTCTGTG------TTTGTGTG------------------------TATATCCACCACA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAATCCAAAGGACACATTC-TTCTGGAGAAATAGGTTAGGGC-----------------TT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681365 301 -   1936607 --Gagatggctgtggcctaacttccacct----cccaaatctcatgatactgagtttcgctgg-agaaatgtattccacattcagaaacctg-gggcagagcaaacctgggagaagtaatattcttacttctattccttaagatatggacaggaccagagaagcaaatggaaatTTTAC-AAAAATTACTAA---A---TGCACATA--------TGTGTGTCTGTG------TTTGTGTG------------------------TATATCCACCACA------GATCACTCTGGTTC---T-CCCCACAGTGCCAAATCTAAATCCAGAGGACACATTC-TTCTGGAGAAATAGGTTAGGGC-----------------TT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622309 321 - 171630274 --Gagatggctgtggcctaacttccacct----cccaaatctcataatcctgagtgtcactgg-agaaatgtattccgca-tcagaaacctg-gggctgggcaaggctgggagatgtaatattgttacttccattccctaagatatagacagggccagagaagcaaatggaaatTTTAC-AAAAATTACTAA---A---TGCAAATA--------CGTCTGTCTGTG------TTGGTG-G------------------------TATATCCACCATATACATAGATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAAACAAGAGGACATATTC-TTCTGGAGAAATAGGTTAGGGC-TGAAAGATGAGATAGATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            180652 285 +   1154217 --GAGATGGCTGTGGCCTAACTTCTACCT----CCCAAA-----------------TCACTGG-AGAAATGTA--CCACATTCAGAAGCCTG-GGGCAGGGCAAGCCTGGGAGATATACTATTCTTACTTCTATTTCCTAAGATATAGACAGGACCAGAGAAGCAAATGGAAATTTTAC-AAAAATTATTAA---A---TGCAAATA--------CGTGTGTCTGGG------TTGGTG-G------------------------TATGTCCACCATA------------------GT---T-CCCCACAGTGCCAAGTCTAAAACAAGAGGACATATTC-TTCTGGAGAAATACGTTAGGGC-TGGAAGATGAGATAGATT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14006916 323 +  15232693 --Gagatggctgtggcctaacttccacct----cccaaatctcataatcctgagtttcactgg-agaaatgtattccacattcagaaacctg-gggcagggcaagcctgggagatgtaatattcttacttctattccttaagatatagacagggccagagaagcaaatggaaatTTTAC-AAAAATTACTAA---A---TGCAAATA--------TGTGTGTCTGTG------TTGGTGTG------------------------TATATCCACCATATACATAGATCACTCTAGTTC---T-CCCCACAGTGCCAAGTCTAAAACCAGAGGACATATTC-TTCTGGAGAAGTAGGTTAGGGC-TGAAAGATGAGATAGATT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      249831 322 +    446445 --gagatggctgcagcctaacttccacct----cccaaatctcataatcctgagtttcactgg-agaaatgtattccaccttcagaaacctg-gggcagggcaagcctggaagatgtaatattcttacttctattccctaagatataaacaggaccagagaagcaaatggaaatTTTAC-AAAAATTACTAA---A---TGCAAATA--------CATGTGTCTGTG------TTGTGT-G------------------------TATATCCACCATATACATAGATCACTCTGGTTC---T-CCCCACAGTGCCAAGTCTAAAACCAGAGGACATATTC-TTCTGGAGAAATAAGTTAGGGC-TGAAAGATGAGATAGATT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4437043 353 + 123392446 --GAGatggcttcagcctaatttccacc-----cccaagtctcacaatatcaagtttcactgg-aaaaatgtatgccacattc-aaaacctgtggacaaggagaacctgagagatgtaatattcttacttctgttccctgagatacagacagagctatggaagtaaatgggaatTTTGT-AAAAATTACTAA---A---TGCAAATATAtgtgtgtatatgtgtgtgtgtatttgtgtgtgtTCATATATGTACATGCATATGTGTATCTCCACCATA------GCTCACTCTAGTTC---T--CCCACAGTGCCAAGCCTAAAACCGGAGGACATATTC-TTTCGGAGTAATAGGCTAAGGC-TTAGAATTGAGAGAGCTT
i micMur3.chr6             I 17 C 0
s proCoq1.NW_012150019v1       83546 348 +   1371726 --gaaatgacttcagcctaatttccacct----cccaagtctcataatatcaagtttcactag-aaaaatgtatgccatgttcaaaaacctgaggacagggagagcctgggagatgtaatattcttacttctattccctgagatacagacagaactatagaagtaaatgggaatTTTGT-AAAAATTACtaa---a---tgcaaata--------tatatgtgtgtgtgtatttgtgtgtgtttatatatgtacatgcatatgtatatCCCCACCATA------GCTCACTCTAGTTC---T-CCCCACAGTGCCAAGCCTAAAACTGGAGGACATATTC-TTTTGGAGTAATAGGTTAAGGC-TTAGAATTGAGAGAGCTT
i proCoq1.NW_012150019v1   I 5 C 0
s otoGar3.GL873550          15317043 337 -  18854210 --gagatggcgtcagcctaacttccacct----cccaagtctcgtaatattaagtttcactgg-aaaactgtgcaccacattcagaagcctgtggacaaggagaacctgggagatgtaatattcttacttcta-------agatgcagacaggaccatagaagtaagtgggaatTTTAT-AAAAATTACTAA---A---CGCAAAta--------tatatatgtgta------tctgtgtgttcatatatgaatatgcatatgtatatCTTCACTGTA------GCTCACTCTAGTTC---TCCCCCACAGTGCCACGCCTAAAACCCCAGGACATATACTTTTTGGAGGAATAGATTAGGGC-TTAGAATTGAGAAACCTT
i otoGar3.GL873550         I 8 C 0
s mm10.chr17                34348182 216 +  94987271 --CACATGACACAGGTCCATTTTCTCTCTGCCACCCAAACCACACAGCT--------------------TGTAT-CCACACTCAAAACTGTGTGTTCAGGG------TGGGAGA----------------------------------ACTGAGCCTCAGAGGCAAATGGGAGTATTCT-AAAGATTACTGAATTA---TACGAACA--------TGACTATC---A------TCTATATC------------------------CATATTCTTTACC------GGTCATCTGACTTCATTC-TCCCACAG------------------------------CTCCGTGACCATGAGT----GC-----------------AT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70367187 263 -  72498081 --cagatggcttcaacctacttgtcacct----tccaaatctcataatactaactttcactga-cagcctgttggccacatccag-atcctg-ggcaagag--agcctgggaaatgtaatactcttacttttatttcctgtgatacagatgaca-cataaaagctaatgggaatTTT---TGAAATTATTAA---A---TGCAAATA--------T------------------------G------------------------TATA---------------CCTCTCTCTTGTTC---C-TCCCACAGTACCAAACCTAGAACCAGAGGGTA------TTTAGGGGTAATAGGTTATGGC-----------------TT
i canFam3.chr12            I 7 I 42
s dasNov3.JH569424            470671 290 +    935526 GCATAATGGATTCCATCTACCTTCCACCC----TGAAA---TCATAGTAGTCTATTTCACTGGAAAAAATGTATGCCGCATGTTTACATATG-------------CATGGGAAATGTAATTTTCTAATTTCCACTTCCTAAATTATAAACGAGACTGTAGAATCAAACTGGAATTTt---aaaaattactaa---aaattactaaaa--------T---------TG------CT-----A------------------------AATCCCCACCACA------G--CACACTGGTTT---C-CCCCTCAGAGCCAAGCCTAGAACCAGGGAGAATATTC-TTTTGAAGTATTTGGACTTAGCCTTGGAAACGATACAGCT-
i dasNov3.JH569424         C 0 C 0

a score=1339929.000000
s hg38.chr6_KI270758v1_alt     17880 88 +     76752 TCACACTGGGCCCAGATCAAGTCTGGGACCTCAATACTTCATTTGTTTGTGTGGTTTGAATTCTGAGAACCTCCAGCCCCTTCTTTTA
s panTro5.chr6             142717635 88 - 175400573 TCACACTGCGCCCAGATCAAGTCTGGGACCTCAATACTTCATTTGTTTGTGTGGTCTGAATTCTGAGAACCTCCAGCCCCTTCTTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869240 88 - 173848474 TCACACTGCGCCCAGATCAAGTCTGGGACCTCAATACTTCATTTGTTTGTGTGGTCTGAATTCTGAGAACCTCCAGCCCCTTCTTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2386987 88 +   2807050 TCACACTGGGCCCAGATCAAGTCTGGGACCTCAATACTTCATTTGTTTGTGTGGTCTGAATTCTGAGAACCTCCAGCCCCTTCTTTTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45679906 88 - 122973662 TCACACTGGGCCCAGATCAAGTCTGGGACTTCAATACTTCATTTGTTTGTGTGGTTTGAATTCTGAGAACCTCCAGCCCCTTCTTTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139303952 88 - 172585720 TCACACTGGGCCCAGATCAAGTCTGGGACCTCAATACTTCATTTGTTTGTGTCGTTTGAGTTCTGAGAACCTCTAGCCTCTTCTTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464267 88 + 170955103 TCACACTGGGCCCAGATCAAGTCTGGGACCTCAATACTTCATTTGTTTGTGTCGTTTGAGTTCTGAGAACCTCCAGCCTCTTCTTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180491 88 +    407600 TCACACTGGGCCCAGATCAAGTCTGGGACCTCAATACTTCATTTGTTTGTGTCGTTTGAGTTCTGAGAACCTCTAGCCTCTTCTTTTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       52930 88 +    463628 TCACACTGGGCCCAGATCAAGTCTGGGACCTCAATATTTCATTTGTTTGTGTGGTTTGAGTTCTGAGAACCTCCAGCCTCTTCTTTTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631118 88 +  71996105 TCACACTGGGCCCAGATCAAGTCTGGGACCTCAATACTTCATTTGTTTGTGTCGTTTGAGTTCTGAGAACCTCCAGCCTCTTCTTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51246 88 -    115496 TCACACTGGGCGCAGATCAAGTCTGGGACCTCAATATTTCATTTGTTTGTGTGGTTTGAGTTCTGAGAACCTCCAGCCTCTTCTTTTA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681666 79 -   1936607 TCACACTGGGCCCAGATCAAGTCTGGGACCTCAATACTTCATTT---------GTTTGAGTTCTGAGAACCTCCAGCCTCTTCTTTTA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622630 88 - 171630274 TCACACTGGACCCAGATCAAGTCTGGGACCTCAATACTTCATTTGTTTGTGTGGTTTGAGTTCTGAGAACCTGCAGCCCCTTCTTTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            180937 88 +   1154217 TCACACTGGACCCATATCAAGCCTGAGACCTCAGTACTTCATTTGTTTGTGCGGTTTGAGTTCTGAGAACCCGCAGCCCCTTCTTTTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007239 88 +  15232693 TCACACTGGACCCAGATCAAGTCTGGGACCTCAATACTTCATTTGTTTGTGTGGTTTGAGTTCTGAGAACCTGCAGCCCCTTCTTTTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250153 88 +    446445 TCACACTGGACCCAGATCAAGTCTGGGACCTCAATACTTCATTCGTTTGTGTGGTTTGAGTTCTGAGAACCTGCAGCCCCTTCTTTTA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4437396 88 + 123392446 CCACACTGGGCCCAGATCAAGTGCGAGACCTGAATACTTCATTTGTTCGTGTGGTTTGTGTTCTGAGAACCTCCAGCCCCTTCTTTTA
i micMur3.chr6             C 0 I 29
s proCoq1.NW_012150019v1       83894 88 +   1371726 TCGCACTGGGCCCAGATCAAGTGCGAGACCCGAACACTTCATTTGTTTGTGTGGTTTGCATTCTGAAAACCTCCAGCCCCTTCTTTTA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15317380 88 -  18854210 TCATACTGGGTCAAAATCAAGTCTGAGACCTCAATAATTCATTTGTTTGTGTAGTTCATGTTCTGAGAACTTCCAGCCCCTTCTTTTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34348398 73 +  94987271 CCACACTGGACCCAGATCAGTTCTGGGGCTTCAGTGCATTTTACGTTTGTTTGATCCAAGTTCT-------TCCA--------TTTTA
i mm10.chr17               C 0 C 0
s dasNov3.JH569424            470961 85 +    935526 TAGCATTGGGCCCCAGTGAAGCCTGGTGCCTCAGTCCTCAATACGTTTGTGAGGTTCGAGTTCTGGAAACTCCCA---CCTCTTTGCA
i dasNov3.JH569424         C 0 C 0
e canFam3.chr12             70367450 42 -  72498081 I

a score=226040.000000
s hg38.chr6_KI270758v1_alt     17968 20 +     76752 GCTTCCCTTCCACCACCCCC
s panTro5.chr6             142717723 20 - 175400573 GCTTCCCTTCCACCACCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869328 20 - 173848474 GCTTCCCTTCCACCACCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387075 20 +   2807050 GCTTCCCTTCCACCACCCCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45679994 20 - 122973662 GCTTCCCTTCCACCACCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304040 20 - 172585720 GCTTCCCTTCCACCGCCCCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464355 20 + 170955103 GCTTCCCTTCCACCGCCCCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180579 20 +    407600 GCTTCCCTTCCACCACCCCC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53018 20 +    463628 GCTTCCCTTCCACCACCCCC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631206 20 +  71996105 GCTTCCCTTCCACCAACCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51334 20 -    115496 GCTTCCCTTCCACCACCCCC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681745 20 -   1936607 GCTTCCCTTCCACCACCCCC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622718 19 - 171630274 GTTTCCCTTCCACCA-CCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181025 20 +   1154217 GTTTCCCTTCCACCACCCCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007327 20 +  15232693 GTTTCCCTTCCACCACCCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250241 20 +    446445 GTTTCCCTTCCACCACTCCC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       83982 14 +   1371726 AATTACCTTTCCCT------
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15317468 13 -  18854210 AACTCCCTTTCCC-------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34348471 20 +  94987271 GCTTCCCTTCTCCCTCTCCC
i mm10.chr17               C 0 I 900
s dasNov3.JH569424            471046 11 +    935526 GCTTTCCTTCC---------
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4437484 29 + 123392446 I
e canFam3.chr12             70367450 42 -  72498081 I

a score=211855.000000
s hg38.chr6_KI270758v1_alt     17988 16 +     76752 TACCCCCTTTTCCTTC
s panTro5.chr6             142717743 16 - 175400573 TACCCCCTTTTCCTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869348 16 - 173848474 TACCCCCTTTTCCTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387095 16 +   2807050 TACCCCCTTTTCCTTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680014 16 - 122973662 TACCCCCTTTTCCTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304060 16 - 172585720 TACCCCCTTTTCCTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464375 16 + 170955103 TACCCCCTTTTCCTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180599 16 +    407600 TACCCCCTTTTCCTTC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53038 16 +    463628 TACCCCCTTTTCCTTC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631226 16 +  71996105 TACCCCCTTTTCCTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51354 16 -    115496 TACCCCCTTTTCCTTC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681765 16 -   1936607 TACCCCCTTTTCCTTC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622737 16 - 171630274 TACCCGCTTTTCCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181045 16 +   1154217 TACCCGCTTTTCCTTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007347 16 +  15232693 TACCTGCTTTTCCTTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250261 16 +    446445 TACCCGCTTTTCCTTC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       83996 14 +   1371726 --TTCCCTTTTCCTCT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15317481 14 -  18854210 --TCCTCTTTTCCTCT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            471057 15 +    935526 -TTCCCCTTTTCCTTC
i dasNov3.JH569424         C 0 I 640
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4437484 29 + 123392446 I
e canFam3.chr12             70367450 42 -  72498081 I

a score=86328.000000
s hg38.chr6_KI270758v1_alt     18004 7 +     76752 TGCACTA
s panTro5.chr6             142717759 7 - 175400573 TGCACTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869364 7 - 173848474 TGCACTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387111 7 +   2807050 TGCACTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680030 7 - 122973662 TGCACTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304076 7 - 172585720 TGCACTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464391 7 + 170955103 TGCACTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180615 7 +    407600 TGCACTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53054 7 +    463628 TGCACTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631242 7 +  71996105 TGCACTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51370 7 -    115496 TGCACTA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681781 7 -   1936607 TGCACTA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622753 6 - 171630274 TGCACT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181061 7 +   1154217 TGCACTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007363 7 +  15232693 TGCACTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250277 7 +    446445 TGCACTA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       84010 7 +   1371726 TGCACTC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15317495 7 -  18854210 TGCACTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4437484 29 + 123392446 I
e canFam3.chr12             70367450 42 -  72498081 I
e dasNov3.JH569424            471072 640 +    935526 I

a score=1022196.000000
s hg38.chr6_KI270758v1_alt     18011 82 +     76752 AGGGTCTTCATGGTG-TTTTTCTCCTACTAAGGACTTCCTACCAGAGGTGCTGAGGGAATATTGATCTAGGTATTTCCTTCTC
s panTro5.chr6             142717766 82 - 175400573 AGGGTCTTCATGGTG-TTTTTCTCCTACTAAGGACTTCCTACCAGAGGTGCTGAGGGAGTATTGATCTAGGTATTTCCTTCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869371 82 - 173848474 AGGGTCTTCATGGTG-TTTTTCTCCTACTAAGGACTTCCTACCAGAGGTGCTGAGGGAGTATTGATCTAGGTATTTCCTTCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387118 81 +   2807050 AGGGTCTTCATGGTG--TTTTCTCCTACTAAGGACTTCCTACCAGAGGTGCTGAGGGAATATTGATCTAGGTATTTCCTTCTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680037 82 - 122973662 AGGGTCTTCATGGTG-TTTTTCTCCTACTAAGGACTTCCTACCAGAGGTGCTGAGGGAATATTGATCTAGGTATTTCCTTCTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304083 82 - 172585720 AGGGTCTTCACAGTG-TTTTTCCTCTACTAAGGACTTCCTGCCAGAGGTGCTGAGGGAATATTGATCTAGGTATTTCCTTCTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464398 82 + 170955103 AGGGTCTTCACAGTG-TTTTTCCTCTACTAAGGACTTCCTGCCAGAGGTGCTGAGGGAATATTGATCTAGGTATTTCCTTCTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180622 82 +    407600 AGGGTCTTCACAGTG-TTTTTCCCCTACTAAGGACTTCCTGCCAGAAGTGCTGAGGGAATATTGATCTAGGTACTTCCTTCTC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53061 82 +    463628 AGGGTCTTCATAGTG-TTTTTCCCCTACTAAGGACTTCCTGCCAGAGGTGCTGAGGGAATATTGATCTAGGTATTTCCTTCTC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631249 83 +  71996105 AGGGTCTTCATAGTGTTTTTTCCCCTACTAAGGATTTCCTGCCAGAGGTGCTGAGGGAATATTGATCTAGGTATTTCCTTCTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51377 82 -    115496 AGGGTCTTCATAGTG-TTTTTCCCCTACTAAGGACTTCCTGCCAGAGGTGCTGAGGGAATATTGATCTAGGTATTTCCTTCTC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681788 82 -   1936607 AGGGTCTTCATAGTG-TTTTTCCCCTACTAAGGACTTCCTGCCAGAGGTGTCGAGGGAATATTGATCTAGGTATTTCCTTCTC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622759 80 - 171630274 GGGGTCCTCATGGTG-TTTTTCTCCTACTAGGGA--GCCTACCAGAGATGCTGCAGGAATACTGATGTAGGTATTTCTTTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181068 80 +   1154217 AGGGTCCTCATGGTG-TTTTTCTCCTACTAAGGA--GCCTACCAGAGATGCTGCGGGAATATTGATGTAGGTACTTCTTTCCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007370 80 +  15232693 AGGGTCCTCATGGTG-TTTTTCTCCTACTAAGGA--GCCTATCAGAGATGCTGCGGGAATATTGATGTAGGTATTTCTTTCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250284 80 +    446445 AGGGTCCTCATGGTG-TTTTTCTCCTACTAAGGA--GCCTACCAGAGATGCTGCGGGAATATTGATATAGGTATTTCTTTCCC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4437513 81 + 123392446 AGGGTCTTCACGGTG--TTTCCTCCTGCTGAGGACTCCCTACCGGGGGTGCCGAGGGGATGTGGATCTAGGCGTTTGCTTCCC
i micMur3.chr6             I 29 C 0
s proCoq1.NW_012150019v1       84017 81 +   1371726 TGGGTCTTTGGGGTG--TTTTCTCCTACGGAGAACTTCCTACCAGAGATGCTGAGGGGATGTGGATCTAGGCGTTCCCTTCTC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15317502 81 -  18854210 AGGGTCTTCCAGGTG--TTTTCTCCTACTGAGGACTTCCTACCGGGGGTGCTGAGAGGATAGTGACCTAGGCATTTCCTTCCC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e canFam3.chr12             70367450 42 -  72498081 I
e dasNov3.JH569424            471072 640 +    935526 I

a score=283604.000000
s hg38.chr6_KI270758v1_alt     18093 26 +     76752 AATTCACTACATAAGAAGCTTTTCTT----
s panTro5.chr6             142717848 26 - 175400573 AATTCACTACATAAGAAGCTTTTCTT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869453 26 - 173848474 AATTCACTACATAAGAAGCTTTTCTT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387199 26 +   2807050 AATTCACTACATAAGAAGCTTTTCTT----
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680119 26 - 122973662 AATTCACTACATAAGAAGCTTTTCTT----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304165 26 - 172585720 AATTCACTACATAAGAAATTTTTCTT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464480 26 + 170955103 AATTCACTACATAAGAAATTTTTCTT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180704 26 +    407600 AATTCACTACATAAGAAATTTTTCTT----
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53143 26 +    463628 AATTCACTACATAAGAAACTTTTCTT----
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631332 26 +  71996105 AATTCACTACATAAGAAACTTTTCTT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51459 26 -    115496 AATTCACTACATAAGAAACTTTTCTT----
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681870 26 -   1936607 AATTCACTACATAAGAAATTTTTCTT----
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622839 26 - 171630274 AATTCACTACACAAGAAGCTTTTCTG----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181148 26 +   1154217 AATTCACTACACAAGAATCttttttt----
i saiBol1.JH378315         C 0 I 287
s cebCap1.NW_016107339v1    14007450 26 +  15232693 AATTCACTACACAAGAATCCTTTCTG----
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250364 26 +    446445 AATTCACTACACAAGAATCTTTTCTG----
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4437594 30 + 123392446 AACTCAGCACGCAAACAACTTTTCTTCTTT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1       84098 30 +   1371726 AACTCAACACACAAAAAACTTTTCTTGTTT
i proCoq1.NW_012150019v1   C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e canFam3.chr12             70367450 42 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C
e dasNov3.JH569424            471072 640 +    935526 I

a score=988035.000000
s hg38.chr6_KI270758v1_alt     18119 84 +     76752 GTGTTACTTTTTCTCATCCTGAGAGGTCACAGAAGCTGGTCTGCTGGAAT-AGATCCCTATCAGAATAAAAACTGTGAACTGTTG
s panTro5.chr6             142717874 84 - 175400573 GTGTTACTTTTTCGCATCCTGAGAGGTCACAGAAGCTGGTCTGCTGGAAT-AGATCCCTATCGGAATAAAAACTGTGAACAGTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869479 84 - 173848474 GTGTTACTTTTTCGCATCCTGAGAGGTCACAGAAGCTGGTCTGCTGGAAT-AGATCCCTATCGGAATAAAAACTGTGAACAGTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387225 84 +   2807050 GTGTTACTTTTTCGCATCCTGAGAGGTCGCAGAAGCTGGTCTGCTGGAAT-AGATCCCTATCAGAATAAAAACTGTGAACTGTTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680145 84 - 122973662 GTGTCACTTTTTCGCATCCTGAGAGGTCGCAGAAGCTGGTCTGCTGGAAT-AGATCCCTATCAGAACAAAAACTGTGAACTGTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304191 84 - 172585720 GTGTCACTTCTTCGCATCCTGAGAGGTCGCAGAAGCTGGTCTGCAGGAAT-AGATCCCTATCAGAATAAAAACTGTGAACTGTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464506 84 + 170955103 GTGTCACTTCTTCGCATCCTGAGAGGTCGCAGAAGCTGGTCTGCAGGAAT-AGATCCCTATCAGAATAAAAACTGTGAACTGTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180730 84 +    407600 GTGTCACTTCTTCGCATCCTGAGAGGTCGCAGAAGCTGGTCTGCAGGAAT-AGATCCCTATCAGAATAAAAACTGTGAACTGTTG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53169 81 +    463628 GTGTCA---CTTCGCATCCTGAGAGGTCGCAGAAGCTGGTCTGCTGGAAT-AGATCCCTATCAGAATAAAAACTGTCAACTGTTG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631358 84 +  71996105 GTGTCACTTCTTCGCATCCTGAGAGGTCGCAGAAGCTGGTCTGCAGGAAT-AGATCCCTATCAGAATAAAAACTGTGAACTGTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51485 81 -    115496 GTGTCA---CTTCGCATCCTGAGAGGTCGCAGAAGCTGGTCTGCTGGAAT-AGATCCCTATCAGAATAAAAACTGTCAACTGTTG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681896 84 -   1936607 GTGTCACTTCTTCGCATCCTGAGAGGTCGCAGAAGCTGGTCTGCAGGAAT-AGATCTCTATTAGAATAAAAACTGTGAACTGTTG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622865 84 - 171630274 GTGTCACTTCTTCGTATCCTGAGAGGTGGCAGAAGCTGGTCTGCTGAAAT-ACATCTCTATCAGAGTCAAAACTGCAAACTGTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181461 80 +   1154217 GTGTCACTTCTTCGTATCCTGAGAGGTAGCAGAAGCTGGTCTGCTGAA-----ATTTCTATCAGAATAAAAACTGTGAACTCTTG
i saiBol1.JH378315         I 287 C 0
s cebCap1.NW_016107339v1    14007476 85 +  15232693 GTGTCACTTCTTTGTATCCTGAGAGGTGGCAGAAGCTGGTCTGCTGAAATAACATCTCTATCAGAATAAAAACTGTGAACTGTTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250390 84 +    446445 GTGTCACTTCTTCGTATCCTGAGAGGTGGCAGAAGCTGGTCTGCTGAAAG-ACGTCTCTATCAGAATAAAAACTGCAAACTGTTG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4437624 82 + 123392446 GTGTCACTTCTCCACATCCTGAGAGGTGGCAGAAGCTAGTCTGCTGAAAT-AAA--TCTGTTAGGATAAGAACTGTGAACTGTTG
i micMur3.chr6             C 0 I 112
s proCoq1.NW_012150019v1       84128 84 +   1371726 GTGCCACTTCTCCACATCCTGAGAGGTGGCAGAAGCTAGTCTGCTGAAAT-AAATCTCTGTTAGAATAAAAACTGTGAACTGTTG
i proCoq1.NW_012150019v1   C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e canFam3.chr12             70367450 42 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C
e dasNov3.JH569424            471072 640 +    935526 I

a score=1239924.000000
s hg38.chr6_KI270758v1_alt     18203 133 +     76752 ATATCAACAAATGCACTAGGACGTTAACAAATGTGCTAGGGCAGTGGGTTAATGGGCCTTCCTAGCATGTCCTGTGTTAATAGAGGCCTCCACGATGACTGGACTCATCTTTAACCTGGGAGGATGGCAGTTT
s panTro5.chr6             142717958 133 - 175400573 ATATCAACAAATGCACTAGGATGTTAACAAATGTGCTAGGGCAGTGGGTTAATGGGCCTTCCTAGCATGTCCTGTGTTAATAGAGGGCTCCACGATGACTGGACTCATCTTTAACCTGGGAGGATGGCAGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869563 133 - 173848474 ATATCAACAAATGCACTAGGATGTTAACAAATGTGCTAGGGCAGTGGGTTAATGGGCCTTCCTAGCATGTCCTGTGTTAATAGAGGGCTCCACGATGACTGGACTCATCTTTAACCTGGGAGGATGGCAGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387309 133 +   2807050 ATATCAACAAATGCACTAGGACATTAACAAATGTGCTAGGGCAGTGGGTTAATGGGCCTTCCTAGCATGTCCTGTGTTAATAGAGGGCTCCATGATGACTGGACTCATCTTTAACCTGGGAGGATGGCAGTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680229 132 - 122973662 ATATC-ACAAATGCACTAGGACATTAACAAATGTGCTAGGGCAGTGGGTTAATGGACCTTCCTAGCATGTCCTGTGTTAATAGAGGGCTCCATGATGACTGGACTCATCTTTAACCTGGGAGGATGGCAGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304275 133 - 172585720 ATAACAACAAATGCACTAGGACATTAACAAATGTGCTAGGGCAATGGGTTAATGGGCCTTCCTAGAATGTCCTGTGTTAACAGGGGGCTCCATGATGACTGGACTCATCTTTAACCTGGGAGGATGGCAGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464590 133 + 170955103 ATAACAACAAATGCACTAGGACATTAACAAATGTGCTAGGGCAATGGGTTAATGGGCCTTCCTAGAATGTCCTGTGTTAACAGGGGGCTCCATGATGACTGGACTCATCTTTAACCTGGGAGGATGGCAGTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180814 133 +    407600 ATAACAACAAATGCACTAGGACATTAACAAATGTGCTAGGGCAATGGGTTAATGGGCCTTCCTAGAATGTCCTGTGTTAACAGGGGGCTCCATGATGACTGGACTCATCTTTAACCTGGGAGGATGGCAGTTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53250 133 +    463628 ATATCAAGAAGTGCACTAGGACATTAGCAAACGTGCTAGGGCAACGGGTTAATGGGCCTTCCTAGAATGTCCTGTGTTAACAGAGGGCTCCATGATGACTGCACTCATCTTTAACTTGGGAGGACGGCATTTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631442 133 +  71996105 ATAACAACAAGTGCACTAGGACATTAACAAATGTGCTAGGGCAATGGGCTAATGGGCCTTCATAGAATGTCCTGTGTTAACAGGGGGCTCCATGATGACTGGACTCATCTTTAACCTGGGAGGACGGCAGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51566 133 -    115496 ATATCAAGAAGTGCACTAGGACATTAGCAAACGTGCTAGGGCAACGGGTTAATGGGCCTTCCTAGAATGTCCTGTGTTAACAGAGGGCTCCATGATGACTGCACTCATCTTTAACCTGGGAGGACGGCATTTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      681980 133 -   1936607 ATATCAACAAGTGTACTAGGACATTAACAAATGTGCTGGGGCAATGGGTTAATGGGCCTTCCTAGAATGTCCTGTGTTAACAAAGGGCTCCATGATGACTGGACTCATCTTTAACCTGGGAGGATGGCAGTTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138622949 112 - 171630274 GTATCGACAAATGCACTAGGA--------------------CGGTGGGCTAATGGGCCTTCCTGGCATGTCCTGTGTTAAGAAAGGGCTCCATGAT-ATTGGACTCATCTTTAACCTGGGAGGATGGCAGTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181541 110 +   1154217 GTATCAACAAATGCATT--GA--------------------CAGCGGGCTAATGGGCCTTCCTAGCATGTCCTGTGTTAATAAAGGGCTCCATGAT-ATTGGATTCATCTTTAACCTGGAAGGTTGGCAGTTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007561 112 +  15232693 GTATCAACAAATGCACTAGGA--------------------CAGTGAGCTAATGGACCTTCCTAGCATGTCCTGTGTTAATAAAGGGCTCCATGAT-ATTGGACTCATCTTTAACCTGGGAGGATGGCAGTTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250474 112 +    446445 ATATCAACAAATGCACTAGGA--------------------CAGTGGGCTAATGGGCCTTCCTAGCATGTCCTGTGTGAATAAAGGGCTCAGTGAT-ATTGGATTCATCTTTAACCTGGGAGGATGGCAGTTT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       84212 112 +   1371726 ATATCAACAAAGGTGCTAGGG--------------------TGCTGGGTAAATGGGCCTTCCTAGCATGTCTTCTGTGATCAAAGATCTCCATGACGACTGGGCTCATCTTTAGCC-AGGAGGATGACAGCTT
i proCoq1.NW_012150019v1   C 0 I 2
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4437706 112 + 123392446 I
e canFam3.chr12             70367450  42 -  72498081 I
e otoGar3.GL873550          15317583   0 -  18854210 C
e dasNov3.JH569424            471072 640 +    935526 I

a score=1038829.000000
s hg38.chr6_KI270758v1_alt     18336 83 +     76752 GAGTTTGATTCATTCTCTCTTCACCTCTACCTGAAACCTGATGCTTTAAAGACCAGAGTTATCTTTATACAGACCTCCTGGGG
s panTro5.chr6             142718091 83 - 175400573 GACTTTGATTCATTCTCTCTTCACCTCTACCTGAAACCTGATGCTTTAAAGACCAGAGTTATCTTTATACAGACCTCCTGGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869696 83 - 173848474 GACTTTGATTCATTCTCTCTTCACCTCTACCTGAAACCTGATGCTTTAAAGACCAGAGTTATCTTTATACAGACCTCCTGGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387442 83 +   2807050 GACTTTGATTCATTCTCTCTTCACCTCTACCTGAAATCTGATGCTTTAAAGACCAGAGTTATCTTTATACAGACCTCCTGGGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680361 83 - 122973662 GAGTTTGATTCATTCTCTCTTCACCTCTACCGGAAACCTGATGCTTTAAAGACCAGAATTATCTTTATACAGACCTCCTGGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304408 83 - 172585720 GAGTTTGATTCATTCTCTCTTCACCTTTACCTGAAACCTGATGCTTTAAAGACCAGAGTTATCTTTATACAGACCTCCTGAGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464723 83 + 170955103 GAGTTTGATTCATTCTTTCTTCACCTTTACCTGAAACCTGATGCTTTAAAGACCAGAGTTATCTTTATACAGACCTCCTGAGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      180947 83 +    407600 GAGTTTGATTCATTCTCTCTTCACCTTTACCTGAAACCTGATGCTTTAAAGACCAGAGTTATCTTTATACAGACCTCCTGGGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53383 83 +    463628 GAGTTTGATTCATTCTCTCTTCACCTTTACCTGAAACCTGATGATTTAAAGACCAGAGTTATCTTCATACAGACCTCCTAGGG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631575 83 +  71996105 GAGTTTGATTCATTCTCTCTTCACCTTTACCTGAAACCTGATGCTTTAAAGACCAGAGTTATCTTCATACAGACCTCCTGGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51699 83 -    115496 GAGTTTGATTCATTCTCTCTTCACCTTTACCTGAAACCTGATGATTTAAAGACCAGAGTTATCTTCATACAGACCTCCTAGGG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682113 83 -   1936607 GAGTTTGATTCATTCTCTCTTCACCTTTACCTGAAAGCTGATGCTTTAAAGACCAGAGTTATCTTTATACAGACCTCCTGGGG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623061 81 - 171630274 GAGTTTGATTCATTCTCTCTTCACCTCTACCTGAAACCTGATGCTTTAAAGATC--AGTTACCTTTATATAGACCTCCTGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181651 83 +   1154217 GAGTTTGAGTCATTCTCTCTTCACCTCTACCTGAAACCTGATGCTTTAAAGATCAGAGTTACCTTTATATAGACCTCCTGGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007673 83 +  15232693 GGGTTTGATTCATTCTCTCTTCACCTCTACCTGAAACTTGATGCTTTAAAGATCAGAGTTACCTTTATACAGACCTCCTGGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250586 83 +    446445 GAGTTTGATTCATTCTCTCTTCACCTCTACCTGAAACCTGATGCTTTAAAGATCAGAGTTACCTTTATATAGACCTCCTGGAG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4437818 82 + 123392446 GAGTTTGATTCATTTTGTCTTCACCTCCACC-GACATCTGACGCTTTGAAGACCAGGGTTCTCTTTACACAGACCTCCAGGGG
i micMur3.chr6             I 112 I 37
s proCoq1.NW_012150019v1       84326 83 +   1371726 GAGTTTGATTTGTTTTGTCTTCACCTCCACCTGACATCTGATGCTTTGAAGACTAGAGTTCTCTTTATACAGACCTCCAGGGG
i proCoq1.NW_012150019v1   I 2 C 0
e mm10.chr17                34348491 900 +  94987271 I
e canFam3.chr12             70367450 42 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C
e dasNov3.JH569424            471072 640 +    935526 I

a score=36256.000000
s hg38.chr6_KI270758v1_alt     18419 3 +     76752 TGT
s panTro5.chr6             142718174 3 - 175400573 TGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869779 3 - 173848474 TGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387525 3 +   2807050 TGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680444 3 - 122973662 TGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304491 3 - 172585720 TGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464806 3 + 170955103 TGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181030 3 +    407600 TGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53466 3 +    463628 TGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631658 3 +  71996105 TAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51782 3 -    115496 TGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682196 3 -   1936607 TGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623142 3 - 171630274 TGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181734 3 +   1154217 TGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007756 3 +  15232693 TGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250669 3 +    446445 TGT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       84409 3 +   1371726 TGT
i proCoq1.NW_012150019v1   C 0 I 41
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4437900 37 + 123392446 I
e canFam3.chr12             70367450 42 -  72498081 I
e otoGar3.GL873550          15317583 0 -  18854210 C
e dasNov3.JH569424            471072 640 +    935526 I

a score=443135.000000
s hg38.chr6_KI270758v1_alt     18422 44 +     76752 GAAATTACCCCTCTTTACTTGACTAGTCTTTGTAAATTACAAAA
s panTro5.chr6             142718177 44 - 175400573 GAAATTACCCCTCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869782 44 - 173848474 GAAATTACCCCTCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387528 44 +   2807050 GAAATAACCCCTCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680447 44 - 122973662 GAAATTACCCCTCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304494 44 - 172585720 GAAATTACCCCGCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464809 44 + 170955103 GAAATTACCCCGCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181033 44 +    407600 GAAATTACCCCGCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53469 44 +    463628 GAAATTACCCCGCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631661 44 +  71996105 GAAATTACCCTGCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51785 44 -    115496 GAAATTACCCCGCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682199 44 -   1936607 GAAATTACCCCGCTTTACTTGAGTAGTCTTTGTAAATTAGAAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623145 44 - 171630274 GCAATTACCCCTCTTTACTTGGACAGTCTTTGTAAATTAGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181737 44 +   1154217 GCAATTACCCTTCTTTACTTGGATAGTCTTTGTAAATTAGAAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007759 44 +  15232693 GCAATTACCCCTCTTTACTTGGATAGTCTTTGTAAATTAGAAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250672 44 +    446445 GCAATTACCCCTCTTTGCTTGGATAGTCTTTGTAAATTAGAAAA
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4437900 37 + 123392446 I
e proCoq1.NW_012150019v1       84412 41 +   1371726 I
e canFam3.chr12             70367450 42 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C
e dasNov3.JH569424            471072 640 +    935526 I

a score=213094.000000
s hg38.chr6_KI270758v1_alt     18466 42 +     76752 TGCATGCAGGTAGGG---------------------------------GTGTGTGTGTGTACGTGTGC---------------ACACTTA
s panTro5.chr6             142718221 46 - 175400573 CGCATGCAGGTAGGG-----------------------------gtgtgtgtgtgtgtgtacgtgtgC---------------ACACTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869826 46 - 173848474 CGCATGCAGGTAGGG-----------------------------gtgtgtgtgtgtgtgtacgtgtgC---------------ACACTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387572 60 +   2807050 TGCATGCAGGTAGGG---------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACGTGTGC---------------ACACTTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680491 48 - 122973662 TGCATGCAGGTAGGG---------------------------gtgtgtgtgtgtgtgtgtacgtgtgC---------------ACACTTA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304538 72 - 172585720 TGCAGGTAG---GAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACGTGCAC---------------ATGTTTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464853 72 + 170955103 TGCAGGTAG---GAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACGTGCAC---------------ATGTTTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181077 61 +    407600 TGCAGGTGG---GGG-----------gtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtACGTGCAC---------------ATGTTTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53513 44 +    463628 TGCAAGTAG---GGg----------------------------tgtgtgtgtgtgtgtgCACGTGCAC---------------ACGTTTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631705 48 +  71996105 TGCAGGTAG---GAg------------------------tgtgtgtgtatgtgtgtgtgtACGTGCAC---------------ATGTTTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51829 44 -    115496 TGCAAGTAG---GGg------------------------tgtgtg----tgtgtgtgtgCACGTGCAC---------------ACGTTTA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682243 46 -   1936607 TGCAGGTAG---GGg--------------------------tgtgtgtgtgtgtgtgtgCACGTGCAC---------------ACGTTTA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623189 55 - 171630274 TGCC--------GGG---------------------------gtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtggtgtTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181781 40 +   1154217 TGCA--------GGG---------------------------gtgtgtgtgtgtgtgtgtgtgtgtgt---------------gtgtTTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007803 50 +  15232693 TGCA--------GGG---------------------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-----gtgtTTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250716 38 +    446445 TGCA----------G---------------------------gtgtgtgtgtgtgcgcgtgcgtgtgt---------------gtgtTTA
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70367492 41 -  72498081 -------------------------------------TACATGTGTGTATATGTGTGTGTTGGGGCGGGGG------------GAAATTA
i canFam3.chr12            I 42 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4437900 37 + 123392446 I
e proCoq1.NW_012150019v1       84412 41 +   1371726 I
e otoGar3.GL873550          15317583  0 -  18854210 C
e dasNov3.JH569424            471072 640 +    935526 I

a score=15300.000000
s hg38.chr6_KI270758v1_alt     18508 1 +     76752 G
s panTro5.chr6             142718267 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869872 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387632 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680539 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304610 1 - 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464925 1 + 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181138 1 +    407600 G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53557 1 +    463628 G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631753 1 +  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51873 1 -    115496 G
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682289 1 -   1936607 G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623244 1 - 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181821 1 +   1154217 G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007853 1 +  15232693 G
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250754 1 +    446445 G
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4437937 1 + 123392446 G
i micMur3.chr6             I 37 C 0
s canFam3.chr12             70367533 1 -  72498081 G
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       84412 41 +   1371726 I
e otoGar3.GL873550          15317583 0 -  18854210 C
e dasNov3.JH569424            471072 640 +    935526 I

a score=58986.000000
s hg38.chr6_KI270758v1_alt     18509 5 +     76752 AAACT
s panTro5.chr6             142718268 5 - 175400573 AAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869873 5 - 173848474 AAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387633 5 +   2807050 AAACT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680540 5 - 122973662 AAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304611 5 - 172585720 AAATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464926 5 + 170955103 AAATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181139 5 +    407600 AAATT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53558 5 +    463628 AAATT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631754 5 +  71996105 AAATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51874 5 -    115496 AAATT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682290 5 -   1936607 AAATT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623245 5 - 171630274 AAACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181822 5 +   1154217 AAACT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007854 5 +  15232693 AAACT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250755 5 +    446445 AAACT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4437938 5 + 123392446 AAACC
i micMur3.chr6             C 0 C 0
s canFam3.chr12             70367534 5 -  72498081 TAATT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            471712 5 +    935526 AGATT
i dasNov3.JH569424         I 640 C 0
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       84412 41 +   1371726 I
e otoGar3.GL873550          15317583 0 -  18854210 C

a score=2978111.000000
s hg38.chr6_KI270758v1_alt     18514 216 +     76752 TTGAATCCACATCTCAGAATATTTT-CCTGCCGG-------CCAACTACAAGTTTCATTGCTTTAACTTGAGAACCTGTAGTCAGATTGTTCTATAATTCTC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAGTCTTATAATTGAGAGACTCTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGTCTAAGGGTAGTTGTCTCTA---------ATAGCTGCCCC
s panTro5.chr6             142718273 216 - 175400573 TTGAATCCACATCTCAGAATATTTT-CCTGCTGG-------CCAACTACAAGTTTCATTGCTATAACTTGAGAACCTGTAGTCAGATTGTTCTATAATTCTC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAGTCTTATAATTGAGAGACTCTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGTCTAAGGGTAGTTGTCTCTA---------ATAGCTGCCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140869878 216 - 173848474 TTGAATCCACATCTCAGAATATTTT-CCTGCCGG-------CCAACTACAAGTTTCATTGCTATAACTTGAGAACCTGTAGTCAGATTGTTCTATAATTCTC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAGTCTTATAATTGAGAGACTCTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGTCTAAGGGTAGTTGTCTCTA---------ATAGCTGCCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387638 216 +   2807050 TTGAGTCCACATCTCAGAATATTTT-CCTGCCGG-------CCAACTACAAGTTTCATTGCTATAACTTGAGAACCTGTAGTCAGATTGTTCTATAATTCTC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAGTCTTTTAATTGAGAGACTCTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGTCTAAGGGTAGTTATCTCTA---------ATAGCTGCCCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680545 225 - 122973662 TTGAATCCACATCTCAGAATATTTT-CCTGCCGG-------CCAACTACAAGTTTCATTGCTATAACTTGAGCACCTGTAGTCAGATTGTTCTATAATTCTC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAGTCTTATAATTGAGAGACTCTGAAGGAAAAGATTAGCTTGACCAGTCACCAAAGAAGTCTAAGGGTAGTTGTCTCTAATGTCTCTGATAGCTGCCCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304616 216 - 172585720 TCGAATCCACATCTCAGAATATTTT-CTTGCCGG-------CCAACTACAAGTTTCATTGCTATAACTCGAGCACCTATAGTCAGATTGTTCTATAATTCTC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAGCCTTATCATTGGGAGAGTCTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGCCTCAGGGTGGTTGCCTCTA---------ATAGCTGCCCG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138464931 216 + 170955103 TCGAATCCACATCTCAGAATATTTT-CCTGCCGG-------CCAACTACAAGTTTCATTGCTATAACTCGAGCACCTATAGTCAGATTGTTCTATAATTCTC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAGCCTTATCATTGGGAGAGTCTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGCCCCAGGGTGGTTGTCTCTA---------ATAGCTGCCCG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181144 216 +    407600 TCGAATCCACATCTCAGAATATTTT-CCTGCCGG-------CCAACTACAAGTTTCATTGCTATAACTTGAGCACCTATAGTCAGATTGTTCTATAATTCTC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAGCCTTATCATTGGGAGAGTCTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGCCTCAGGGTGGTTGCCTCTA---------ATAGCTGCCCG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53563 216 +    463628 TCGAATCCACATCTCAGAATATTTT-CCTGCCGG-------CCAAGTACAAGTTTCATTGCTATAATTTGAGCATCTATAGTCAGATTGTTCTATAATTCTC-TGTGTTCTTG----------TCCGTTCT---AAATGGCACAAGCTAAGCCTTATAATTGGGAGAGTCTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGCCTCAGGGTGGTTGTCTCTA---------ATAGCTGCCCC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631759 216 +  71996105 TCAAATCCACATCTCAGAATATTTT-CCTGCCAG-------CCAACTACAAGTTTCATTGCTATAACTTGAGCACCTATAGTCAGATTGTTCTATAATTTTC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAGCCTTATAATTGGGAGACTCTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGCCTCAGGGTGGTTGTCTCTA---------ATAGCTGCCCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       51879 216 -    115496 TCGAATCCACATCTCAGAATATTTT-CCTGCCGG-------CCAACTACAAGTTTCATTGCTATAATTTGAGCATCTATAGTCAGATTGTTCTATAATTCTC-TGTGTTCTTG----------TCCGTTCT---AAATGGCACAAGCTAAGCCTTATAATTGGGAGAGTCTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGCCTCAGGGTGGTTGTCTCTA---------ATAGCTGCCCC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682295 215 -   1936607 TCGAATCCACATCTCAGAATATTTT-CCTGCCGG-------CCAACTACAAGTTTCATTGCTATAACTTGAGCACCTATAGTCAGATTGTTCTAGAATTCTC-TGTGTTCTTG----------TCTATTCT---AAATGGCACAAGCTAAGCCTTATAATTGGGAGACACTGAAGGAAAAGATTAGCTTGACCAATCACCAAAGAAGCCTCAGGGTGGTTGTCTCTA---------A-AGCTGCCCC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623250 214 - 171630274 TTGAGTCCACATCTCAGAATATTTT-CCTGCTGG-------CTAACTACAAGTTTCATTGCTATAACTTGAGCACCTATAGTCAGATTGTTCTAGAAT--TC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAATCTTATAATTGGGAGACTCTGAAGGAAAAGATTAGCTTGAGAAATCACCGAAGAAGCCTAAGGGAGGTTGTCTCTA---------ATAGCTGCCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            181827 214 +   1154217 TTGAGTCCACATCTCAGAATGTTTT-CCTCCTGG-------CCAACTACAAATTTCATTGCTATAACTTGAGCGCCTATAGTCAGATTGTTCTAGAAT--TC-TGTGTTCTTG----------TCTGTTCT---AGATGGCACAAGCTAAAACTTATAATTGGGAGACTCTGAAGGAAAAGATTAGCCTGACAAATCACCGAAAAAGCCTAAGGGAGGTTGTCTCTA---------ATAGCTGCCCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14007859 214 +  15232693 TTGAGTCCACATCTCAGAATATTTT-CCTGCTGG-------CCAACTGCAAATTTCATTGCTATAACTTGAGCACCTATAGTCAGATTGTTCTAGAAT--TC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAATCTTATAATTGGGAGACTCTGAAGAAAAAGATTAGCTTGACAAATCACCAAAGAAGCCTAAGGGAGGTTGTCTCTA---------ATAGCTGCCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250760 213 +    446445 TCGAGTCCACATCTCAGAATATTTT-CCTGCTGG-------CCAACTACAAATTTCATTGCTATAACTTGAGCACCTATAGTCAGATTGTTCTAGAAT--TC-TGTGTTCTTG----------TCTGTTCT---AAATGGCACAAGCTAAATCTTATAATTGGGAGACTCTGAAGGAAAAGATTAGCTTGACAAATC-CCAAAGAAGCCTAAGGAAGATTGTCTCTA---------ATAGCTGTCCC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4437943 227 + 123392446 TTGAATCCACATCCCAGAATGTTTTCCCTGCCAG-------CCAGCCGCAGGTTCCATCGCTACAACTTGAGCACCTACAGTCAGATTGTTCTATAATCCCC-AATTTTCTTAAATTTTCTGGTCTGTTCT---AGAAGGCACAAGCTGAGCCTTATAATTGAGAGATGGTGAAGGAAAAGATTAGTTTGAAAAATCACCAAAGAAGCCCAAGGGTGGTTGTATCCA---------ATAGCTGCCCC
i micMur3.chr6             C 0 I 12
s proCoq1.NW_012150019v1       84453 207 +   1371726 TTGAATCCGCATCCCAGAATATTTTCCCTGCCAG-------CCAACTACAGGTTCCATTGCTATAACTTGAGCACGTACAGTCAGATTGTTCTATAATCCCC-AATTTTCTTA-----------------------AAGGCACAAACTGAACCTTATAATTGAGAGATGGTGAAGGAAAAGATTAGTTTGAAAAATCACCAAAGAAGCCTAAGGGTGGTTGCCTTCA---------ACAGCTGCTCC
i proCoq1.NW_012150019v1   I 41 C 0
s canFam3.chr12             70367539 217 -  72498081 TGGAATCCACATTTCAGAATATTTC-CCTGAAAG-------CCAACCACAGGTTCTGTTGTTATGATTTGAACATCTATAGTCAGGTTGTTTTATAATTCCCAAGTTTTTTTG----------TGGGTTCT---AAAAGGCACAAGCTGAATTCAATAACTGAGAGATTGTGAAGGGACAGATTAGGTTGAAAAATCACTACAGAAGCCTAAGACTGGTTGCCTCCA---------AAAGCTGCCCC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            471717 226 +    935526 TCCAATCCACATCACAGTATATTTC-CATGCCAGTATATTTCCAACTACTGGTTCCATTGCTGGGATTCGAGTATCTACCATCAGACTGTCCTATAATTCCC-AGTTTTCTTG----------TCTGTTCTGTAAGCAGGCACAAACTGAGCTTGATAATTCTGACACTATGAAGGAAGTAATGATTTTTTTAAATTACCAACACAGCCTAAAGGCGGTGGCTTCCA---------ATCACTGCCCC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e otoGar3.GL873550          15317583   0 -  18854210 C

a score=148715.000000
s hg38.chr6_KI270758v1_alt     18730 14 +     76752 CATACAG-----CCAGTCC
s panTro5.chr6             142718489 14 - 175400573 CATACAG-----CCAGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870094 14 - 173848474 CATACAG-----CCAGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387854 14 +   2807050 CATACAG-----CCAGTCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680770 14 - 122973662 CATATGG-----CCAGTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304832 14 - 172585720 CATATGG-----CCAGTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138465147 14 + 170955103 CATATGG-----CCAGTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181360 14 +    407600 CATATGG-----CCAGTCC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53779 14 +    463628 CATATGG-----CCAGTCC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631975 14 +  71996105 TATATGG-----CTAGTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       52095 14 -    115496 CATATGG-----CCAGTCC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682510 14 -   1936607 CATATGG-----CCAGTCC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623464 19 - 171630274 CATATGGCCACTCCACTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            182041 14 +   1154217 CATATGG-----CCACTCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14008073 14 +  15232693 CATATGG-----CCACTCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250973 14 +    446445 TATATGG-----CCACTCC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       84660 14 +   1371726 CACAGGG-----CTGATCA
i proCoq1.NW_012150019v1   C 0 C 0
s canFam3.chr12             70367756 14 -  72498081 CATATTG-----CCAATAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            471943 14 +    935526 CATGCGG-----CCAGCCA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438170 12 + 123392446 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=505201.000000
s hg38.chr6_KI270758v1_alt     18744 36 +     76752 ATGGCTTGATTC-------------ACTCACTCAACAT---CTCCTGTTCCT
s panTro5.chr6             142718503 36 - 175400573 ATGGCTTGGTTC-------------ACTCACTCAACAT---CTCCTGTTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870108 36 - 173848474 ATGGCTTGGTTC-------------ACTCACTCAACAT---CTCCTGTTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387868 36 +   2807050 ATGGCTTGATTC-------------ACTCACTCAACAT---CTCCTGTTCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680784 36 - 122973662 ATGGCTTGATTC-------------ACTCACTCAACAC---CTCCTGTTCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304846 36 - 172585720 GTGGCTTGATTC-------------ACTCACTCAGCAC---CTCCTGTTCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138465161 36 + 170955103 GTGGCTTGATTC-------------ACTCACTCAGCAC---CTCCTGTTCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181374 36 +    407600 GTGGCTTGATTC-------------ACTCACTCAGCAC---CTCCTGTTCCT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53793 36 +    463628 ATGGCTTGATTC-------------ACTCCCTCAGCAC---CTCCTGTTCCT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39631989 36 +  71996105 ATGGCTTGATTC-------------ACTCACTCAGCAC---CTCCTGTTCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       52109 36 -    115496 GTGGCTTGATTC-------------ACTCACTCAGCAC---CTCCTGTTCCT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682524 36 -   1936607 ATGGCTTGATTC-------------ACTCACTCAGCAC---CTCCTGTTCCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623483 36 - 171630274 ATGGCTTAATTC-------------ACTCACTCAGCAC---CTCCTGTTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            182055 36 +   1154217 ATGGCTTGATTC-------------ACTCACTCAGCAC---CTCCTGTTTCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14008087 33 +  15232693 ATGGCTTGAGT----------------TCACTCAGCAC---CTCCTGTTCCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      250987 36 +    446445 ATGGCTTGATTC-------------ACTCACTCAGCAC---CTTCTGTTCCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4438182 36 + 123392446 ATGGCTTGATCC-------------ACTCACTCAGCAC---CTCCCGTTCCT
i micMur3.chr6             I 12 I 36
s proCoq1.NW_012150019v1       84674 36 +   1371726 ACGGCTTGATTC-------------ACTCACTCAGCAC---CTCCTGTTCCT
i proCoq1.NW_012150019v1   C 0 C 0
s canFam3.chr12             70367770 39 -  72498081 ATCGTTTGACTC-------------ACTCACTTAGTACCAGCTCCTGTATTT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            471957 49 +    935526 ATGTTTTGACCCCCATCCTCACAAGGCTCACTCACAGC---CTCCTCTTCCT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=45023.000000
s hg38.chr6_KI270758v1_alt     18780 4 +     76752 TAGA--
s panTro5.chr6             142718539 4 - 175400573 TAGA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870144 4 - 173848474 TAGA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387904 4 +   2807050 TAGA--
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680820 4 - 122973662 TAGA--
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304882 4 - 172585720 TAGA--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138465197 4 + 170955103 TAGA--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181410 4 +    407600 TAGA--
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53829 4 +    463628 TAGA--
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39632025 4 +  71996105 TAGA--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       52145 4 -    115496 TAGA--
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682560 4 -   1936607 TAGA--
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623519 4 - 171630274 TAGA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            182091 4 +   1154217 TAGA--
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14008120 4 +  15232693 TAGA--
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      251023 4 +    446445 TAGA--
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       84710 4 +   1371726 CAGA--
i proCoq1.NW_012150019v1   C 0 I 138
s canFam3.chr12             70367809 4 -  72498081 TACA--
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            472006 4 +    935526 --GAGC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438218 36 + 123392446 I
e otoGar3.GL873550          15317583 0 -  18854210 C

a score=531085.000000
s hg38.chr6_KI270758v1_alt     18784 46 +     76752 AATTCTGGCAATTTGTTTTCAGAGTTCCTTCCATCTC----TATCATATT
s panTro5.chr6             142718543 46 - 175400573 AATTCTGGCAATTTGTTTTCAGAGTTCCTTCCATCTC----TATCATATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870148 46 - 173848474 AATTCTGGCAATTTGTTTTCAGAGTTCCTTCCATCTC----TATCATATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387908 46 +   2807050 AATTCTGGCAATTTGTTTTCAGAGTTCCTTCCATTTC----TATCATATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680824 46 - 122973662 AATTCTGGCAATTTGTTTTCAGAGTTCCTTCCATCTC----TATCATATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304886 46 - 172585720 AATTCTGGAAATTTGTTTTCAGAGTTCCTTCCATTTC----TATCATCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138465201 46 + 170955103 AATTCTGGCAATTTGTTTTCAGAGTTCCTTCCATTTC----TATCACCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181414 46 +    407600 AATTCTGGCAATTTGTTTTCAGAGTTCCTTCCATTTC----TATCACCTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53833 46 +    463628 AATTCTGGCAATTTGTTTTCAGAGTTCTTTCCATTTC----TATCATCTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39632029 46 +  71996105 AATTCTGTCAATTTGTTTTCAGAGTTCCTTCCATTTC----TATCACCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       52149 46 -    115496 AATTCTGGCAATTTGTTTTCAGAGTTCTTTCCATTTC----TATCATCTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682564 46 -   1936607 AATTCTGGCAATTTGTTTTCAGAGTTCCTTCCATTTC----TATCATCTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623523 46 - 171630274 AATTCTGGCAATTTGTTTTCAGAGTTCCTTCCGTCTC----TGTCATCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            182095 46 +   1154217 AATTCTGGCAATTTGTTTTCAGAGTTCCTTTCATCAC----TGTCATCTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14008124 46 +  15232693 AATTCTGGCAATTTGTTTTCAGAGTTCCTTTCATCTC----TGTCATCTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      251027 46 +    446445 AAGTCTGGCAATTTGTTTTCAGAGTTCCTTCCATCTC----TATCATCTT
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70367813 50 -  72498081 CATTCTGGCAGCTTGTTTTCAGAGTCACCTACAACTCCACATATCATCTG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            472010 46 +    935526 CGTTCTGGTAGCTTGTTTTCAGAGTGGTTTCCCACGC----TATCAATTT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438218 36 + 123392446 I
e proCoq1.NW_012150019v1       84714 138 +   1371726 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=568974.000000
s hg38.chr6_KI270758v1_alt     18830 45 +     76752 GGCCACTCCGAAGTCAGCACAGAGAATTAGGATATAGGACATTCT
s panTro5.chr6             142718589 45 - 175400573 GGCCACTCCGAAGTCAGCACAGAGAATTAGGATACAGGACATTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870194 45 - 173848474 GGCCACTCCGAAGTCAGCACAGAGAATTAGGATACAGGACATTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387954 45 +   2807050 GGCCACTCCAAAGTCAGCACAGAGAATTAGGATATAGGATATTCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680870 45 - 122973662 GGCCACTCCAAAGCCAGCACAGAGAATTAGGATATAGGACATGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304932 45 - 172585720 GGCCACTCCAAAGCCAGCACACAGAATTAGGATATAGGACATTCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138465247 45 + 170955103 GGCCACTCCAAAGCCAGCACACAGAATTAGGATATAGGACATTCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181460 45 +    407600 GGCCACTCCAAAGCCAGCACACAGAATTAGGATATAGGACATTCT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53879 45 +    463628 GGCCACTCCAAAGCCAGCACAGAGAATTAGGATATAGGACATTCT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39632075 45 +  71996105 GGCCACTCCAAAGCCAGCACAGAGAATTAGGATATAGGACATTCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       52195 45 -    115496 GGCCACTCCAAAGCCAGCACAGAGAATTAGGATATAGGACATTCT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682610 45 -   1936607 GGCCACTCCAAAGCCAGCACACAGAATTAGGATATAGGATATTCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623569 45 - 171630274 GGCCACTCCAAAGCCAGCACAGAAAATTAGGGTACAGGACATTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            182141 45 +   1154217 GGCCACTCCAAAGCCAGCACAGAAAATTAAGATACAGGACATTCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14008170 45 +  15232693 GGCCACTCCAAAGCCAGCACAGAGAATTAGGATACAGGACATTGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      251073 45 +    446445 GGTCACTCCAAAGCCAGCACAGAAAATTAGGATACAGGACATTCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4438254 45 + 123392446 GGCCACTCCAAAGCTGGCACAAATAATTAGGATATAGGACATTCT
i micMur3.chr6             I 36 I 426
s canFam3.chr12             70367863 45 -  72498081 TGCTGTTACAAATCCAGCACAAATCCCAGAAATACAGGGCATTCT
i canFam3.chr12            C 0 I 11
s dasNov3.JH569424            472056 45 +    935526 TGTTACCCTAAGGCCAGTACAAACCCTAGGGATATGGAGCATCCC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       84714 138 +   1371726 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=672319.000000
s hg38.chr6_KI270758v1_alt     18875 82 +     76752 GTTGCTCT----CATCTTCT-------CATCTTTGTTCTCATCTT---CTG-AAAAAACGCATGTCCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
s panTro5.chr6             142718634 82 - 175400573 GTTGCTCT----CATCTTCT-------CATCTTTGTTCTCATCTT---CTG-AAAAAACGCATGTCCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870239 82 - 173848474 GTTGCTCT----CATCTTCT-------CATCTTTGTTCTCATCTT---CTG-AAAAAACGCATGTCCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2387999 82 +   2807050 GTTCCTCT----CATCTTCT-------CATCTTTGTTCTCATCTT---CTG-AAAAAATGCATGTCCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680915 82 - 122973662 GATGCTTT----CATCTTCT-------CATATTTGTTCTCATCTT---CTG-CAAAAATGCATGTCCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139304977 71 - 172585720 GATGCTCT----CATC-------------------TTCTCATCTT---CTGAAAAAAATGCATCCTCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138465292 71 + 170955103 GATGCTCT----CATC-------------------TTCTCATCTT---CTGAAAAAAATGCATCCTCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181505 71 +    407600 GATGCTCT----CATC-------------------TTCTCATCTT---CTGAAAAAAATGCATCCTCTCACCTGTGAATCCT-TTTTTAGCTATTCTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53924 71 +    463628 GATGCTCT----CATC-------------------TTCTCATCTT---CTGAAAAAAATGCATCCCCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39632120 71 +  71996105 GATGCTCT----CATC-------------------TTCTCATCTT---CTGAAAAAAATGCATCCTCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       52240 71 -    115496 GATGCTCT----CATC-------------------TTCTCATCTT---CTGAAAAAAATGCATCCCCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682655 71 -   1936607 GATGCTCT----CATC-------------------TTCTCATCTT---CTGAAAAAAATGCATCCCCTCACCTATGAATCCT-Tttttagctattctt
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623614 82 - 171630274 GATGCTCT----CATCTTCT-------CATCTTTGTTCTGATCTT---CTG-AAAACATGCGGGCCCTCACCTGCGAATCCT-TTCTTAGCTATTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            182186 79 +   1154217 GATGCTCT----CATCTTCT-------CATCTTTGTTCTCATCTT---CTG-AAAACATACAGGCCCTCACCTGTGAATCCT-TTCTTAGCTATT---
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14008215 82 +  15232693 GATGCTCT----CATCTTCT-------CATCTTTGTTCTCATCTT---CTG-AAAACATGCAGGCCCTCACCTGTGAATCAT-TTCTTGGCTATTCTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      251118 82 +    446445 GATGCTCT----CATCTTCT-------CATCTTTGTTCTCATCTT---CTG-AAAACATGCAGGCCCTCACCTGTGAATCCT-TTCTTAGCTATTCTT
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70367919 96 -  72498081 AATGCTGTTTTGCATTGTTTTGCAACGCAAGGTTGTTTCCATTTTGTCCTG-AAAATGTGC-CGCCCTCACCTGTGAATCCTCTTTTCAGCTATTCTC
i canFam3.chr12            I 11 C 0
s dasNov3.JH569424            472101 74 +    935526 -----------------------AATGCAAAATTGTTTTCATCCTCTCCTG-AAAATGTACATGCTCTCATCTGTGATTCCTCCTTTCAGACAATCTC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438299 426 + 123392446 I
e proCoq1.NW_012150019v1       84714 138 +   1371726 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=937478.000000
s hg38.chr6_KI270758v1_alt     18957 86 +     76752 CCAGGAATAGGGAATGATTTTACTCAATCATCCATGTAAAACAGAGACCAGAAACTTCA--T--T--TAGACATTATGTTCTGTTGCATGAG
s panTro5.chr6             142718716 86 - 175400573 CCAGGAATAGGGAATGATTTTACTCAATCATCCATGTAAAACAGAGACCAGAAACTTCA--T--T--TAGACATTATGTTCTGTTGCATGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870321 86 - 173848474 CCAGGAATAGGGAATGATTTTACTCAATCATCCATGTAAAACAGAGACCAGAAACTTCA--T--T--TAGACATTATGTTCTGTTGCATGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2388081 86 +   2807050 CCAGGAATAGGGAATGATTTTACTCAATCATCCATGTAAAACAGAGTCCAGAAACTTCA--T--C--CAGACATTATGTTCTGTTGCATGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45680997 86 - 122973662 CCAGGAATAGGGAATGATTTTACTCAATCATCCATGTAAAACAGAGTCCAGAAACTTCA--T--T--TAGACATTATGTTCTATTGCATGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139305048 86 - 172585720 CCAGGAATAGGGAATGATTTTACTCAACCATCCATGTAAAACACAGTCCAGAAACTTCA--T--T--TAAACATGATGTTCTGTTTCATGAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138465363 86 + 170955103 CCAGGAATAGGGAATGATTTTACTCAACCATCCATGTAAAACACAGCCCAGAAACTTCA--T--T--TAAACATGATGTTCTGTTTCATGAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181576 86 +    407600 CCAGGAATAGGGAATGATTGTACTCAACCATCCATGTAAAACACAGTCCAGAAACTTCA--T--T--TAAACATGATGTTCTGTTTCATGAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       53995 73 +    463628 CTAGGAACAGGGTATGATTTTACTCAACCATCCATGTAAAACACAGTCCAGAAACTTCA--T--T--TAAACATTATGT-------------
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39632191 73 +  71996105 CCAGGAACAGGGTATGATTTTACTCAACCATCCATGTAAAACACAGTCCAGAAACTTCA--T--T--TAAACATTATGT-------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       52311 73 -    115496 CCAGGAATAGGGAATGATTTTACTCAACCATCCATGTAAAACACAGTCCAGAAACTTCA--T--T--TAAACATTATGT-------------
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682726 86 -   1936607 ccaggaataggggatggttttactcaaccatccataTAAAACACAGTCCAGAAACTTCA--T--T--TAAACATTATGTTCTGTTTCATAAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623696 85 - 171630274 -CAGGAATAGGGAATGAATTTACTCAACCATCCACGTAAAACAGAGTCCGGAAACGTCA--G--T--TAAACAGTATGTTCTGTTGCATGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            182265 77 +   1154217 ---------GGGAACGCTTTTACTCAACCATCCACATAAAACAGAGTCTGGAAACTTCA--G--T--TAAACATTATGTTCTATTGCATGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14008297 86 +  15232693 CCAGGAATAGGGAACGATTTTCCTCAACCATCCACATAAAACAGAGTCTGGAAACTTCA--G--T--TAAACATTATGTTCTGTTGCATGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      251200 86 +    446445 CCAGGAATAGGGAATGATTTTACTCAAACATCCACGTAAAACAGAGTCTGGAAACTTCA--G--T--TAAACATTATGTTCTGTTGCATGAG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       84852 86 +   1371726 CCAGGAATAGGGAATGATTTTACTCAGCCATCCATGTAGGAC--AGTCTAGAAACTGCAACT--T--TAAATATTATGCTCTGTTGCATGAG
i proCoq1.NW_012150019v1   I 138 I 5390
s canFam3.chr12             70368015 88 -  72498081 CTGGGAATAGGAAGTGACCTGACTCCACTGTCCATGTAAGAGAGAGTCAAGAAATGGTA--TTCT--TAAATATTATGCTCTATTGCATGAC
i canFam3.chr12            C 0 I 3
s dasNov3.JH569424            472175 87 +    935526 CCAGAAATAGGAAATGACTTTACTCAACTATCCATGTA-GATGGACTGTAGACACTACA--T--CCATAAATATTACGCACTATTGCATAAG
i dasNov3.JH569424         C 0 I 3
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438299 426 + 123392446 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=728690.000000
s hg38.chr6_KI270758v1_alt     19043 57 +     76752 TAAACTATGGAATCTCATCAAGGTCAGAATGATTTTATAGAATTCAGAtgtgtttgt
s panTro5.chr6             142718802 57 - 175400573 TAAACTATGGAATCTCATCAAGGTCAGAATGATTTTATAGAATTCAGATGTGTTTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870407 57 - 173848474 TAAACTATGGAATCTCATCAAGGTCAGAATGATTTTATAGAATTCAGATGTGTTTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2388167 57 +   2807050 TAAACTATGGAATCTCATCAAGGTCAGAATTATTTTATAGAATTCAGATGTGTTTGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45681083 57 - 122973662 TAAACTATGGAATCTCATCAAGGTCAGAATGATTTTATAGAATTCAGATGTGTTTGT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139305134 57 - 172585720 TAAACTATGAAATCTCATCAAGGTCAGAATGATTTTATAGAATTCAGATGTGTTTGT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138465449 57 + 170955103 TAAACTATGGAATCTCATCAAGGTCAGAATGATTTTATAGAATTCAGATGTGTTTGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181662 57 +    407600 TAAACTATGGAATCTCATCAAGGTCAGAATGATTTTATAGAATTCAGATGTGTTTGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       54068 45 +    463628 ------------TCTCATCAAGGTCAGAATGATTTTATAGAATTCAGATGTGTTTGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39632264 45 +  71996105 ------------TCTCATCAAGGTCAGAATGATTTTATAGAATTCAGATGTGTTTGT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       52384 45 -    115496 ------------TCTCATCAAGGTCAGAATGATTTTATAGAATTCAGATGTGTTTGT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      682812 57 -   1936607 TAAACTATGGAATCTCATCAAGGTCAGAATGATTTTATAGAATTCAGATGTGTTTGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138623781 57 - 171630274 TAAACTGTGGAATCTCATCAAGGTCAGAATGGCTTTATAGAATTCAGATGTGTTTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            182342 57 +   1154217 TAAACTATGGAAGCTCATCAAGGTCAGAATGGTTTTATAGAATTCAGAtgtgtttgt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14008383 57 +  15232693 TAAACTGTGGAATCTCATCAAGGTCAGAATGGTTTTATAGAATTCAGATGTGTTTGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      251286 57 +    446445 TAAACTGAGGAATCTCATCAAGGTCAGAATGGTTTTATAGAATTCAGATGTGTTTGT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       90328 57 +   1371726 TAAAGTGTGGAACCTCATCAAGGCCTGAATGATTTTATGGAATTCAGATGTGTTTGT
i proCoq1.NW_012150019v1   I 5390 I 910
s canFam3.chr12             70368106 52 -  72498081 GAAAATGTAGAATCTCATCTAGGTCTGAATGATTTTATAGAATGTAGATGTG-----
i canFam3.chr12            I 3 C 0
s dasNov3.JH569424            472265 57 +    935526 TAAGTCGTGGGACCTCGTCTAGGTCAGAATGACTTCATAGAATTCAGATGTATTCAC
i dasNov3.JH569424         I 3 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438299 426 + 123392446 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=55241.000000
s hg38.chr6_KI270758v1_alt     19100 12 +     76752 atgcatac--------gtgt
s panTro5.chr6             142718859 12 - 175400573 ATGCATAC--------gtgt
i panTro5.chr6             C 0 I 7
s panPan2.chr6             140870464 12 - 173848474 ATGCATAC--------gtgt
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01000036v1     2388224 12 +   2807050 ATGCATAt--------gtgt
i gorGor5.CYUI01000036v1   C 0 I 3
s nomLeu3.chr1a             45681140 12 - 122973662 ATGCATAC--------gtgt
i nomLeu3.chr1a            C 0 I 9
s rheMac8.chr4             139305191 20 - 172585720 ATGCATACgtgtgtgtgtgt
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             138465506 18 + 170955103 ATGCATAC--gtgtgtgtgt
i macFas5.chr4             C 0 I 3
s macNem1.NW_012013344v1      181719 16 +    407600 ATGCATAC----gtgtgtgt
i macNem1.NW_012013344v1   C 0 I 3
s cerAty1.NW_012003702v1       54113  8 +    463628 ATGC------------gtgt
i cerAty1.NW_012003702v1   C 0 I 3
s chlSab2.chr17             39632309 12 +  71996105 ATACATAC--------gtgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       52429 12 -    115496 ATGCAtgt--------gtgt
i manLeu1.NW_012101600v1   C 0 I 1308
s colAng1.NW_012115555v1      682869 12 -   1936607 ATGCATAC--------gtgt
i colAng1.NW_012115555v1   C 0 I 11
s calJac3.chr4             138623838 12 - 171630274 TTGCATAG--------gtgt
i calJac3.chr4             C 0 I 89
s saiBol1.JH378315            182399  8 +   1154217 ----atgg--------atgt
i saiBol1.JH378315         C 0 I 27
s cebCap1.NW_016107339v1    14008440 12 +  15232693 ATGCATAt--------gtgt
i cebCap1.NW_016107339v1   C 0 I 35
s aotNan1.NW_018508875v1      251343 12 +    446445 ATGCATAC--------Atgt
i aotNan1.NW_018508875v1   C 0 I 21
s dasNov3.JH569424            472322  1 +    935526 ---C----------------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438299 426 + 123392446 I
e proCoq1.NW_012150019v1       90385 910 +   1371726 I
e canFam3.chr12             70368158  0 -  72498081 C
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=736028.000000
s hg38.chr6_KI270758v1_alt     19112 80 +     76752 tgtgtgtgtgtgtgtctgtgtgtTGAAGGAGGAGAATTAG--GAAAGTATCAA-TTTCAATCAATCTAATTCATAT--AA-TTTTT
s panTro5.chr6             142718878 80 - 175400573 tgtgtgtgtgtgtgtgtgtgtgtTGAAGGAGGAGAATTAG--GAAAGTATCAA-TTTCAATCAATCTAATTCATAT--AA-TTTTT
i panTro5.chr6             I 7 C 0
s panPan2.chr6             140870477 80 - 173848474 tgtgtgtgtgtgtgtgtgtgtgtTGAAGGAGGAGAATTAG--GAAAGTATCAA-TTTCAATCAATCTAATTCATAT--AA-TTTTT
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01000036v1     2388239 80 +   2807050 tgtgtgtgtgtgtgtgtgtgtgtTGAAGGAGGAGAATTAG--GAAAGTATCAA-TTTCAATCAATCTAATTCATAT--AA-TTTTT
i gorGor5.CYUI01000036v1   I 3 C 0
s nomLeu3.chr1a             45681161 77 - 122973662 tgtgtgtgtgtgtgtgtgtgtgtT---GGAGGAGAATTAG--GAAAGTATCAA-TTTCAATCAATCTAATTCATAT--AA-TTTTT
i nomLeu3.chr1a            I 9 C 0
s rheMac8.chr4             139305214 83 - 172585720 tgtgtgtgtgtgtgtgtgtgtgtTGAAGGAGGAGAACTGG--GAAAGTATCTA-TTTCAATCAATCTAATTCATATAAAACTTTTT
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             138465527 81 + 170955103 tgtgtgtgtgtgtgtatgtgtgtTAAAGGAGGAGAACTGG--GAAAGTATCAA-TTTCAATCAATCTAATTCATAT--AACTTTTT
i macFas5.chr4             I 3 C 0
s macNem1.NW_012013344v1      181738 81 +    407600 tgtgtgtgtgtgtgtatgtgtgtTAAAGGAGGAGAACTGG--GAAAGTATCAA-TTTCAATCAATCTAATTCATAT--AACTTTTT
i macNem1.NW_012013344v1   I 3 C 0
s cerAty1.NW_012003702v1       54124 81 +    463628 tgtgtgtgtgtgtgtgtgtgtgtTGGAGGAGGAGAACTGG--GAAAGTATCAA-TTTCAATCAATCTAATTCATAT--AACTTTTT
i cerAty1.NW_012003702v1   I 3 C 0
s chlSab2.chr17             39632321 76 +  71996105 -----gtgtgtgtgtgtgtgtgtTGAAGGAGGAGAACTGG--GAAAGTATCTA-TTTCAATCAATCTAATTCATAT--AACTTTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       53749 81 -    115496 tgtgtgtgtgcgtgtgtgtgtgtTGGAGGAGGAGAACTGG--GAAAGTATCAA-TTTCAATCAATCTAATTCATAT--AACTTTTT
i manLeu1.NW_012101600v1   I 1308 C 0
s colAng1.NW_012115555v1      682892 81 -   1936607 tgtgtgtgtgtgtgtgtgtgtgtTAAAGGAGGAGAATTGG--GAAAGTATCAA-TTTCAATCAATCTAATTCATAT--AACTTTTT
i colAng1.NW_012115555v1   I 11 C 0
s calJac3.chr4             138623939 74 - 171630274 tgtgtgtgtgcatgtgtgcgtgtT---GAAGGAGAATTGG--AAAAGTATCAA-TTTCAATCAATCTA--ACATAT--AA--TTTT
i calJac3.chr4             I 89 C 0
s saiBol1.JH378315            182434 72 +   1154217 tgtgtgtgtgtgtgtgtgCGCGCT---GAAGGAGAATTGG--GAAAGTATCGA-TTCCAATCAAATT----CATAT--AA--TTTT
i saiBol1.JH378315         I 27 C 0
s cebCap1.NW_016107339v1    14008487 71 +  15232693 tgtgtctgtgtgtgtgtgtgtATT---GAAGGAGAATTGG--GAAAGTATTGA-TTTCAATCAAatt----catat--aa---ttt
i cebCap1.NW_016107339v1   I 35 C 0
s aotNan1.NW_018508875v1      251376 76 +    446445 tgtgtgtgtgtgtgtgtgtgtgtT---GAAGGAGAACTGG--GAAAGTATCAA-TTTCAATCAATCTAATATATGT--AA--TTTT
i aotNan1.NW_018508875v1   I 21 C 0
s canFam3.chr12             70368158 65 -  72498081 ------------TGTGTTTGGGGT----AAGGAGAGCTGG--AAAAGTCTCCATTTTCATTCAATCACATTTATAT--AA-TTTTT
i canFam3.chr12            C 0 I 15
s dasNov3.JH569424            472323 74 +    935526 ----TGTGTGTGT-TGGGTGGGGTGGGGGACGAAAAGAAGCTGAAAGTCTCCA-TTT---TCAATCTAATTCATAT--AACTTTT-
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438299 426 + 123392446 I
e proCoq1.NW_012150019v1       90385 910 +   1371726 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=76610.000000
s hg38.chr6_KI270758v1_alt     19192 10 +     76752 TAATTTACTC
s panTro5.chr6             142718958 10 - 175400573 TAATTTACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870557 10 - 173848474 TAATTTACTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2388319 10 +   2807050 TAATTTGCTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45681238 10 - 122973662 TAATTTACTC
i nomLeu3.chr1a            C 0 I 3
s rheMac8.chr4             139305297 10 - 172585720 TAATTTACTG
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             138465608 10 + 170955103 AAATTTACTG
i macFas5.chr4             C 0 I 3
s macNem1.NW_012013344v1      181819 10 +    407600 AAATTTACTG
i macNem1.NW_012013344v1   C 0 I 3
s cerAty1.NW_012003702v1       54205 10 +    463628 TAATTTACTG
i cerAty1.NW_012003702v1   C 0 I 3
s chlSab2.chr17             39632397 10 +  71996105 TAATTTACTG
i chlSab2.chr17            C 0 I 3
s manLeu1.NW_012101600v1       53830 10 -    115496 TAATTTACTG
i manLeu1.NW_012101600v1   C 0 I 3
s colAng1.NW_012115555v1      682973 10 -   1936607 AAATTTACTG
i colAng1.NW_012115555v1   C 0 I 3
s calJac3.chr4             138624013 10 - 171630274 TTATTTACTC
i calJac3.chr4             C 0 I 3
s saiBol1.JH378315            182506 10 +   1154217 TTTTTCACTT
i saiBol1.JH378315         C 0 I 3
s cebCap1.NW_016107339v1    14008558 10 +  15232693 ttatttactt
i cebCap1.NW_016107339v1   C 0 I 3
s aotNan1.NW_018508875v1      251452 10 +    446445 TCATTTACTC
i aotNan1.NW_018508875v1   C 0 I 3
s dasNov3.JH569424            472397  8 +    935526 --GTTTACTC
i dasNov3.JH569424         C 0 I 3
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438299 426 + 123392446 I
e proCoq1.NW_012150019v1       90385 910 +   1371726 I
e canFam3.chr12             70368223 15 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=1052438.000000
s hg38.chr6_KI270758v1_alt     19202  95 +     76752 AATTGTTTAAATACTATTTGATCCTATTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTTTAAAAC----------------ATCTGAAGCATACAAAtgtaattgcta
s panTro5.chr6             142718968  95 - 175400573 AATTGTTTAAATACTATTTGATCCTATTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTTTAAAAC----------------ATCTGAAGCATACAAAtgtaattgcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870567  95 - 173848474 AATTGTTTAAATACTATTTGATCCTATTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTTTAAAAC----------------ATCTGAAGCATACAAAtgtaattgcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2388329  92 +   2807050 AA---TTTAAATACTATTTGATCATATTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTTAAAAAC----------------ATCTGAAGCATACAAAtgtaattgcta
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45681251  94 - 122973662 AATTGTTTAAATACTATTTGATCATATTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTT-AAAAC----------------ATCTGAAGCATACAAAtgtaattgcta
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4             139305310  94 - 172585720 AATTCTTTAAATACTATGTGATCATACTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTT-AAAAC----------------ATCTGAAGCATACAAAtgtaattgcta
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             138465621  94 + 170955103 AATTCTTTAAATACTATATGATCATACTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTT-AAAAC----------------ATCTGAAGCATACAAAtgtaattgcta
i macFas5.chr4             I 3 C 0
s macNem1.NW_012013344v1      181832 110 +    407600 AATTCTTTAAATACTATATGATCATACTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTT-AAAACTGAATAAATAATTTGTATCTGAAGCATACAAAtgtaattgcta
i macNem1.NW_012013344v1   I 3 C 0
s cerAty1.NW_012003702v1       54218  94 +    463628 AATTCTTTAAATACTATGTGATCATACTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTT-AAAAC----------------ATCTGAAGCACACAAAtgtaattgcta
i cerAty1.NW_012003702v1   I 3 C 0
s chlSab2.chr17             39632410  94 +  71996105 AATTCTTTAAATACTATGTGATCATACTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTT-AAAAC----------------ATCTGAAGCATACAAATGTAATTGCTA
i chlSab2.chr17            I 3 C 0
s manLeu1.NW_012101600v1       53843  94 -    115496 AATTCTTTAAATACTATGTGATCATACTCTTTATTTAAGGTACTTTCT------TTTGTTTATTTTTT-AAAAC----------------ATCTGAAGCACACAAAtgtaattgcta
i manLeu1.NW_012101600v1   I 3 C 0
s colAng1.NW_012115555v1      682986  94 -   1936607 AATTCTTTAAATACTATGTGATCATACTCTTTATTTAAGGTACTTTCT------TTTGTCTATTTTTT-AAAAC----------------ATCTGAAGCATACAAAtgtaattgcta
i colAng1.NW_012115555v1   I 3 C 0
s calJac3.chr4             138624026  90 - 171630274 AATTCTTTAAATACTATTTGATCATATTCTTTATTTAAGGTACTG----------TCATTTATTTTTG-AAAAT----------------ATCTGAAGCATACAAATGTAATTACTA
i calJac3.chr4             I 3 C 0
s saiBol1.JH378315            182519  94 +   1154217 AATTCTTTAAATACTATTTGATCATATTCTTTATTTAAGGTACTGTTT------TTTATTTATTTTTG-AAAAT----------------ATCTTAAGCACACAAACgtaattacta
i saiBol1.JH378315         I 3 C 0
s cebCap1.NW_016107339v1    14008571  94 +  15232693 aattctttaaatactatttgatcatattctttatttaaggtactgtct------tttatttatttTTG-AAAAT----------------ATCTGAAGCATACAAAtgtaattacta
i cebCap1.NW_016107339v1   I 3 C 0
s aotNan1.NW_018508875v1      251465  94 +    446445 AATTCTTTAAATACCATTTGATCATATTCTTTATTTAAGGTAATGTCT------TTTATTTATTTTTG-AAAAT----------------ATCTGAAACATACAAAtgtaattacta
i aotNan1.NW_018508875v1   I 3 C 0
s micMur3.chr6               4438725  94 + 123392446 AATTCTTTAAATACTGTTTGATCACATTCTATATTTAAGGTACTATTT------TTAATTGGTTTTTG-AGAAC----------------ATCTGAAGCATACAATTGTAACTGCTA
i micMur3.chr6             I 426 I 701
s dasNov3.JH569424            472408  94 +    935526 ACTTCTTTAAATACTATTTAA------ATTATATTTAAGGTAGTTTCTAAACTGTGTGTTTGTTTTTG-AGAAT----------------ATCTGAAGCATACAAAtgtaactgctg
i dasNov3.JH569424         I 3 C 0
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       90385 910 +   1371726 I
e canFam3.chr12             70368223  15 -  72498081 I
e otoGar3.GL873550          15317583   0 -  18854210 C

a score=145636.000000
s hg38.chr6_KI270758v1_alt     19297 13 +     76752 ggttggataagca
s panTro5.chr6             142719063 13 - 175400573 ggttggataagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870662 13 - 173848474 ggttggataagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2388421 13 +   2807050 ggttggataagca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45681345 13 - 122973662 ggttggataagca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139305404 13 - 172585720 ggttggaaaagca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138465715 13 + 170955103 ggttggaaaagca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181942 13 +    407600 ggttggaaaagca
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       54312 13 +    463628 ggttggaaaagca
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39632504 13 +  71996105 GGTTGGAAAAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       53937 13 -    115496 ggttggaaaagca
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      683080 13 -   1936607 ggttggaaaagca
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138624116 13 - 171630274 GGTTGGATAAGCA
i calJac3.chr4             C 0 I 312
s saiBol1.JH378315            182613 13 +   1154217 ggttggataagca
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14008665 13 +  15232693 ggttggataagca
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      251559 13 +    446445 ggttggataagca
i aotNan1.NW_018508875v1   C 0 C 0
s dasNov3.JH569424            472502 13 +    935526 gtttgaataaaca
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438819 701 + 123392446 I
e proCoq1.NW_012150019v1       90385 910 +   1371726 I
e canFam3.chr12             70368223 15 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=7156100.000000
s hg38.chr6_KI270758v1_alt     19310 699 +     76752 ctaaatggaatcttt-aatcaaacaaaaactcattgtgcctgctcttgcctctttaga-gaatttcattagagatgctattcccctgcgcttgggtaggaattatagcatacttcatgaattattttcttgattctaattaatatgctattctacaattcccttaaattgcacaagtatatcttag-ttcagcaattagattgtttggtactatataataattgaaagtcccaacttgatttaatataaatctctttctatccctg--tgtaaattgttgaaggcaggaatgagtgtggttctccttccttcttacgttcta-ctggcactttgaggccatagctcatctagggtaggttcagggaaggggaggaagagaaaaagaccagaaacgtcttactggaaatgaaatatttgtgttctctgagcct------------ggatgatgttccaagtaaagcttttctcttgtgcaaggtttggtaggctcttcagattccttcatggcccgtgtctggtgtgtaggggacactaaaacatt--ctttgtgtccacaaactctgggagtgt-gaccattcccaatgcaTCACAGTTTCCAAGATCCAATACCAACTAGTCCATATACCCTGCCCTTTAGGATTCTGATGGAAGCAGAAGCCAATCCTATCATCTTCAACCACCCAACTTCATATCAAGTAGAGGAAACTCTTGGTCC
s panTro5.chr6             142719076 699 - 175400573 ctaaatggaatcttt-aatcaaacaaaaactcattgtgcctgctattgcctctttaga-gaatttcattacagatgctattcccctgcgcttgggtaggaattatagcatacttcatgaattattttcttgattctaattaatatgctattctacaattcccttaaattgcacaagtatatcttag-ttcagcaattagattgtttggtactatataataattgaaagtcccaacttgatttaatataaatctttttctatccctg--tgtaaattgttgaaggcaggaatgagtgtggttctccttccttcttacgttcta-ctggcactttgaggccatagctcatctagggtaggttcagggaaggggaggaagagaaaaagaccagaaacgtcttactggaaatgaaatatttgtgttctctgagcct------------ggatgatgttccaagcaaagcttttctcttgtgcaaggtttggtaggctcttcagattccctcatagcccgtgtctggtgtgtagggaacactaaaacatt--ctttgtgtccacaaactctgggagtgt-gaccattcccaatgcatcacagtttccaagatccaataccaactagtccatataccctgccctttaggattctgatggaagcagaagccaatccTATCATCTTCAACCACCCAACTTCATATCAAGTAGAGGAAACTCTTGGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140870675 699 - 173848474 ctaaatggaatcttt-aatcaaacaaaaactcattgtgcctgctattgcctctttaga-gaatttcattagagatgctattcccctgcgcttgggtaggaattatagcatacttcatgaattattttcttgattctaattaatatgctattctacaattcccttaaattgcacaagtatatcttag-ttcagcaattagattgtttggtactatataataattgaaagtcccaacttgatttaatataaatctttttctatccctg--tgtaaattgttgaaggcaggaatgagtgtggttctccttccttcttacgttcta-ctggcactttgaggccatagctcatctagggtaggttcagggaaggggaggaagagaaaaagaccagaaacgtcttactggaaatgaaatatttgtgttctctgagcct------------ggatgatgttccaagtaaagcttttctcttgtgcaaggtttggtaggctcttcagattccctcatagcccgtgtctggtgtgtagggaacactaaaacatt--ctttgtgtccacaaactctgggagtgt-gaccattcccaatgcaTCACAGTTTCCAAGATCCAATACCAACTAGTCCATATACCCTGCCCTTTAGGATTCTGATGGAAGCAGAAGCCAATTCTATCATCTTCAACCACCCAACTTCATATCAAGTAGAGGAAACTCTTGGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2388434 699 +   2807050 ctaaatggaatcttt-aatcaaacaaaaactcattgtgcctgctattgcctctttaga-gaatttcattagagatgctattcccctgcgcttgggtaggaattatagcatacttcatgaattattgtcttgattctaattaatatgctattctacagttcccttaaattgcacaagtatatcttag-ttcagcaattagattgtttattactatataataattgaaagtcccaacttgatttaagataaatctttttctatccctg--tgtaaattgttgaaggcaggaaTGAGTGTGGTTCTCCTTCCTTCTTACGTTCTA-CTGGCACTTTGAGGCCATAGATCATCTAGGGCAGGTTCAGGGAAGGGGAAGAAGAGAAAAAGACCAGAAACATCTTACTGGAAATGAAATATTTGTGTTCTCTGAGCCT------------GGATGATGTTCCAAGTAAAGCTTTTCTCTTGTGCAAGGTTTGGTAGGCTCTTCAGATtccctcatggcccatgtctggtgtgtagggaacactaaaacatt--ctttgtgtccacaaactctgggagtgt-gaccattcccaatgcaTCACAGTTTCCAAGATCCAATACCAACTAGTCCATATACCCTGCCCTTTAGGATTCTGATGGAAGCAGAAGCCAATTCTATCATCTTCAACCACCCAACTTCATATCAAGTAGAGGAAACTCTTGGTCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45681358 699 - 122973662 ctaaatggaatcttt-aatcaaacaaaaactcattgtgcctgctgttgcccctttaga-gaatttcattagagatgctattcccctgtgcttgggtaggaattatagcatacttcatgaattatttgctcgattctaattcatgtgctattcttcaattcccttaaattgcacaagtatatcttag-ttcagcaattagattgtttggtactatataataattgaaagtcccaacttgatttaagataaatctttttctatcccta--tgtaaattgttgaaggcaggaaTGAGTGTGGTTCTCCTTCCTTCTTACATTCTA-CTGGCACTTTGAGGCCATAGCTCATCTAGGGCAGGTTCAGGGAAGGGGAGGAAGAGAAAAAGACCAGAAATGTCTTACTGGAAATGAAATATTTGTGTTCTCTGAGCCT------------GGATGGTGTTCCAAGTAAAGCTTTTCTCTTGTGCAAGGTTTGGTAGGCTCTTCAGATtccctcatggcccatgcctggtgtgtagggaacactaaaacatc--ctttgtgtccacaaactctgggagtgt-gaccattcccaatgcatcacagtttccaagatctaataccagctagtccatataccctgccctttaggattctgatgggagcagaagccaattctatcatcttcaaccacccaacttcatatcaagtagaggaaactcttggtcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139305417 700 - 172585720 ctaaatggaattcttaaatcaaacaaaaactcattgtgtctgctattgcccctttaga-taatttcattagagatgccactcccctgtgcttgggtaggaattatagcatacttcatgaattatttgcttgattctaattaatatgctattcaacaattcccttaaattgcgcaagtatatcttagtttcagcaattagattgtttggtactatataataattgaaagtcccaacttgatttgagataaatctttttctatctctg--tgtaaactgttgcagtcaggaatgagtgtggttctccttccttctaacactcta-ctggcactttgaggccatagcccatctagggcaggttcagggaaggggaggaagagaaaaagaccggaaatgtcttactgaaaatgaaatatttgtgttctctgagcct------------gggtgacgttccaaataaagcttttctcttgtgcaaggtttggtaggctcctcagattctctcatggcccatgtctggtgtgtagggaacactacaacatc--ctttgtgtccacaaactccgggagtgt-gaccgttcccaatgcatcactgttt-caagatccaatactgactagcccatataccccgctctttaggattctgatgggagcagaagccaattccatcatcttcaaccacccaacttcatatgaaatagaggaaactcttggtcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138465728 700 + 170955103 ctaaatggaatccttaaatcaaacaaaaactcattgtgtctgctattgcccctttaga-taatttcattagagatgccactcccctgtgcttgggtaggaattatagcatacttcatgaattatttgcttgattctaattaatattctattctaccattcccttaaattgcgcaagtatatcttagtttcagcaattagattgtttggtactatataataattgaaagtcccaacttgatttgagataaatctttttctatctctg--tgtaaactgttgcagtcaggaatgagtgtggttctccttccttctaacactcta-ctggcactttgaggccatagcccatctagggcaggttcagggaaggggaggaacagaaaaagactggaaatgtcttactgaaaatgaaatatttgtgttctcttagcct------------gggtgacgttccaagtaaagcttttctcttgtgcaaggtttggtaggctcctcagattctctcatggcccatgtctggtgtgtagggaacactaaaacatc--ctttgtgtccacaaactccgggagtgt-gaccattcccaatgcaTCACTGTGT-CAAGATCCAATACCAACTAATCCATATACCCCGCTCTTCAGGATTCTGATGGGAGCAGAAGCCAATTCCATCATCTTCAACCACCCAACTTCATATCAAGTAGAGGAAACTCTTGGTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      181955 699 +    407600 ctaaatggaatccttaaatcaaacaaaaactcattgtgtctgctattgcctctttaga-taatttcattagagatgccactcccctgtgcttgggtaggaattatagcatatttcatgaatgatttgctcgattctaattaatatgctattctaccattcccttaaattgcacaagtatatcttag-ttcagcaattagattgtttggtactatataataattgaaagtcccaacttgatttgagataaatctttttctatctctg--tgtaaactgctgcagtcaggaatgggtgtggttctccttccttctaacactcta-ctggcactttgaggccatagcccatctagggcaggttcagggaaggggaggaagagaaaaagactggaaatgtcttactgaaaatgaaatatttgtgttctctgagcct------------gggtgacattccaagtaaagcttttctcttgtgcaaggtttggtaggctcctcagattctctcacggcccatgtctggtgtgtagggaacactaaaacatc--ctttgtgtccacaaactccgggagtgt-gaccattcccaatgcaTCACTGTTT-CAAGATCCAATACCAACTAATCCATATACCCCGCTCTTCAGGATTCTGATGGGAGCAGAAGCCAATTCCATCATCTTCAACCACCCAACTTCATATCAAATAGAGGAAACTCTTGGTCC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       54325 699 +    463628 ctaaatggaatccttaaatcaaacaaaaactcattgtgtctgctattgcccctttaga-taatttcattagagatgctactcccctgtgcttgggtaggaattatagcatacttcatgaattatttgctcaattctaattaacattctattctaccattcccttaaattgcacaagtatgtcttag-ttcagcaattagattgtttggtactatataataattgaaagtcccaacttgatttaagataaatctttttctatctctg--tgtaaattgttacagtcaggaatgagtgtggttctccttccttctaacattcta-ctggcactttgaggccatagcccatctagggcaggttcagggaaggggaggaagagaaaaaaaccagaaatgtcttactggaaatgaaatatttgtgttctctgagcct------------gggtgacattccaagtaaagcttttctcttgtgcaaggtttggtaggctcctcagattctctcatggcccatgtctggtgtgtagggaacactaaaacatc--ctttgtgtccacaaactccgggagcgt-gaccattcccaatgcatcactgttt-caagatccaatacggactagcccatataccccgctctttaggattctgatgggagcagaagccaattcCATCATCTTCAACCACCCAACTTCATATCAAGTAGAGGAAACTCTTGGTCC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39632517 700 +  71996105 CTAAATGGAATTCTTAAATCAAACAAAAACTCATTGTGTCTGCTATTGCCCCTTTAGA-TAATTTCATTAGAGATGCTACTCCCCTGTGCTTGGGTAGGAATTATAGCACACTTCATGAATGATTTGCTCGATTCTAATTAATATGCTATTCAACAATTCCCTTAAATTGCGCAGGTATATCTTAGTTTCAGCAATTAGATTGTTTGGTACTATATAATAATTGAAAGTCCCAACTTGACTTAAGATAAATCTTTTTCTATCTCTG--TGTAAATTGTTGCAGTCAGGAATGAGTGTGGTTCTCCTTCCTTCTAACATTCTA-CTGGCACTTTGAGGCCATAGCCCATCTAGGGCAGGTTCAGGGAAGGAGAGGAAGAGAAAAAGACCGGAAATGTCTTACTGAAAATGAAATATTTGTGTTCTCTGAGCCT------------GGGTGACGTTCCAAGTAAAGCTTTTCTCTTGTGCAAAGTTTGGTAGGCTCCTCAGATtctctcatggcccatgtctggtgtgtagggaacactaaaacatc--ctttgtgtccacaaactccgggagtgt-gaccattcccaatgcatcactgttt-caagatccaatactgactagcccatatacccggttctttaggattctgatgggagcagaagccaattccatcatcttcaaccacccaacttcatatcaaatagaggaaactcttggtcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       53950 699 -    115496 ctaaatggaatccttaaatcaaacaaaaactcattgtgtctgctattgcccctttaga-taatttcattagagatgctactcccctgtgcttgggtaggaattatagcatacttcatgaattatttgctcgattctaattgacattctattctaccattcccttaaattgcacaagtatgtcttag-ttcagcaattagattgtttggtactatataataattgaaagtcccaacttgatttaagataaatctttttctatctctg--tgtaaattgttgcagtcaggaaTGAGTGTGGTTCTCCTTCCTTCTAACATTCTA-CTGGCACTTTGAGGCCATAGCCCATCTAGGGCAGGTTCAGGGAAGGGGAGGAAGAGAAAAAAACCAGAAATGTCTTACTGGAAATGAAATATTTGTGTTCTCTGAGCCT------------GGGTGACATTCCAAGTAAAGCTTTTCTCTTGTGCAAGGTTTGGTAGGCTCCTCAGATtctctcatggcccatgtctggtgtgtagggaacactacaacatc--ctttgtgtccacaaactccgggagcgt-gaccattcccaatgcatcactgttt-caagatccaataccgactagcccgtataccctgctctttaggattctgatgggagcagaagccaattcCATCATCTTCAACCACCCAACTTCATATCAAGTAGAGGAAACTCTTGGTCC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      683093 700 -   1936607 ctaaatggaatccttaaatcaaacaaaaactcattgtgtctgctattgcccctttaga-taatttcatcagagacgctactcccctgtgtttgggtgggaattatagcatacttcatgaattatttgctcgattctaattaatatgctattctacaattcccttaaattgcgcaagtatatcttagtttcagcaattagattgtttggtactatataataattgaaagtcccaacttgatttaagataaatctttttctatctctg--tgtaaattgttgcagtcaggaatgagtgtggttctccttccttctaacattcta-ctggcactttgaggccatagcccatctagggcaggttcagggaaggggaggaagagaaaaagaccggaaatgtcttactgaaaatgaaatatttgcgttctctgagcct------------gggtgatgttccaagtaaagcttttctcttgtgcaaggtttggtaggctcctcagattctctcacggcccatgtctggTGTGTAGGGAACACTAAAACATC--CTTTGTGTCCACAAACTCCGGGAGTGT-GACCATTCCCAATGCATCACTGTTT-CAAGATCCAATACCGACTAGCCCATATACCCCGCTCTTTAGGATTCTGATGGGAGCAGAAGCCAATTCCATCATCTTCAACCACCCAACTTCATATCAAATAGAGGAAACTCTTGGTCC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138624441 672 - 171630274 cTAAATGAAATTTTt-aatcaaataaaaactcattgtatctgccactgcccctttaga-gaatttcatcagagatgctattcccttgaccttaggtaggaattctagcgcattacatggattatttgctcgattctaattaatatgctattctaaaattcccttaaattgcacaagcatatcttag-tgcagcaattggattgtttggtacaatataataatggaaagtcccaacttgatttaagataaatctttt--------------------------GACAGGAATAAGTGTGGTTCTCCTTCCTTCTTACATTCTA-CTGGCACTTTGAGGCCATAGcccatctagggtaggttcagggaagggg---aagagaaaaagaccagaaatgtcttactggaaatgaaatatttgtgttctctgagcct------------ggatgacgttccaagtaaagcttttctcttgtgcaggattgtgtaggctcttcagattccctcaaggcccacgtctggtgtgtagggaacactaaaacatc--ctttgtatccatgaactctaggagtgtgggccattcccaatgtatcaccttttccaagatccactaccaactagtccatataccccgccctttaagattctgatgggagcagaaaccagtt-caTCATCTTCAACCACCCAACTTCATATCGAATAGAGGAAACTCTTGGTCC
i calJac3.chr4             I 312 C 0
s saiBol1.JH378315            182626 698 +   1154217 ctaaatgaaatcttt-aatcaaataaaaactcattgtgtctgccattgcccctttaga-gaatttcatcagagatgctattcccttgacgttgggtaggaattctagcatactacatgaattatttggtcaattctaattaatatgctattctataattcccttaaattacacaagcatatcttag-tgcagcaaatagatcgtttggtactatacaataattgaaagtcccaacttgatttaagataaatctttt-ctatccccg--tgtaaattgttgcaggcaggaaTAAGTGTGCTTCTCCTTCCTTCTTATATTCTA-CTGGCACTTTGAGGCCATAGCCTACCGAGGGTAGGTTCAGGGAAGGAGAAAAAGAGAAAAAGACCAGAAATCTCTTACTGGAAATGAAATATTTGTGTTCTCTGAGCCC------------GGATGACATTCCAAGGAAAGCTTTTCTCTTGTGCAAGTTTCTGTAGGCTCTTCAGATtccctcatggcccatgtctggtatgtagggaacgct-aaacatc--cttcgtgtccacgaactctaggagtgtggaccattcccaatgcatcacctttgccgagatgcactaccaattagtccatattccctgccctttaggattctgatgggagcagaaaccaattcCATCATCTTCAACCACCCAACTTCATATTAAGCAGAGGAAACTCTTGGTCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14008678 690 +  15232693 ctaaatgaaatcttt-aatccaataaaaactcattgtgtctgccattgtccctttagaggaatttcatcagagatgccattcccttgactttggataggaattctagcatactacatgaactatttgctcgattctaattaatatgctattctataattctcttaagttgcacaagcatatcttag-tgcagccattagattgtttggtactatacaataattgaaagtcccaacttaatttaagataaatctttt-ttatacccg--tgtaaattgttgcaggcaggaaTAAGTGTGGTTCTCCTTCCTTCTTACATTCTA-CTGGCACTTTGAGACCATAGcccacctagggtaggttcagggaaggggaaaaagagaaaaagaccagaaatctcctactggaaatgaaatatttgtgttctctgagcct------------ggatgacattccaagtaaagcttttctcttgtgcaagtttctgtaggctcttcagattccctcATGGTCCATGTCTGGTGTGTAGGGAACAct------------ttgtgtccacgaactctaggagtgtggaccattcccaatgcatcacctttgccaagatgcactgccaaccaatccatataccctgccctttaggattctgttgggagtagaaaccaattcCAACATCTTCAACCACCCAACTTCATATCAAGTAGAGGAAACTCTTGGTTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      251572 698 +    446445 ctaaatgaaatcttt-agtcaaataaaaactcattgtgtctgccattgcccctttaga-gaatttcatcagagaagctattcccttgaccttgggtaggaattctagcatactacatgaactatttgctcgattctaatcaatatgctattctataattcccttaaattgcacaagcatatcttag-tgcagcaattagattgtttggtagtatacaataattgaaagtcccaacttgatttaagataaatctttttctatcccca--tgtaaattgttgcaggcaggaaTAAGTGTGGTTCTCCTTCCTTCTTACATTCTA-CTGGCACTTTGAGGCCATAGcccacctagggtaggttcagggaagggcaaaaagagaaaaagaccagaaatctcttactggaaatgaaatatttttgttctctgagcct------------ggatgacgttccaagtaaagcttttctcttgtgcaagtttctgtaggctcttcagattcc--catggcccatgtctggtgtgtagggaacactaaaacatc--ctttgtgtccacgaactctaggagtgtggaccattcccagtgcatcacctttgccaagagacactaccaactagtccatataccctgcccttcaggattctgatgggagcagaaaccaattccatcatcttcaaccacccaacttcatatcaagtagaggaaactcttggtcc
i aotNan1.NW_018508875v1   C 0 C 0
s dasNov3.JH569424            472515 666 +    935526 ctaaatgaaacgtt--aatcaaaaccaaacttgctgtgtctaacatttcctctttaca-ggtcctcattagagaggctattcccccgccagtgggtagaaattgtaatacac----caaataatttgctcgattttaagtaacagactgtcctctgattcctttaagttgcacacaactgtcttaa-accagcaatcagagtgccagtcattgtgtaacaagcaactgttccaactggattt-agatacatcgtttcctatcccctgctggaaatttttacaggtaaaaaAGGGTCTGGTTCCCCATCTTCCTTACACTATAGCTGGCTCTTTGAGGCAATAGCCCATTTGGAGTGGGTCCAG---AGAGAAACAAGAGAAAAGAGCAGGGAATGTCCTGCTGGAAGTGAATTGTGTGTGCCCTTCAGGTCTGGATGGAGGTCAGGATGATGCTCAAAGAAGTCCTTTTCTTTTGTGCAAACTTT-GTAGATGCTTCAGATTCCCTCGTGGACCATAT-TGGTATTTAAGAGACACTGAAACATCAGCTTTG---CCAGAAAATCAAGG-GTGCAGACCATTCCTACACTGCCACCCTGT-CCAGAAGCTCCAGTGACCAGTCCACCCA-CCTGCCCT---------GGGTGCAGGCAGAA-CCAATCCCATTGTCTTCAACCATCCAA-----------------------CTTGGTC-
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438819 701 + 123392446 I
e proCoq1.NW_012150019v1       90385 910 +   1371726 I
e canFam3.chr12             70368223  15 -  72498081 I
e otoGar3.GL873550          15317583   0 -  18854210 C

a score=91778.000000
s hg38.chr6_KI270758v1_alt     20009 7 +     76752 CCCTAGA
s panTro5.chr6             142719775 7 - 175400573 CCCTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140871374 7 - 173848474 CCCTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389133 7 +   2807050 CCCTAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682057 7 - 122973662 ccctaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306117 7 - 172585720 ccctaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138466428 7 + 170955103 CCCTAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      182654 7 +    407600 CCCTAGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55024 7 +    463628 CCCTAGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633217 7 +  71996105 ccctaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       54649 7 -    115496 CCCTAGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      683793 7 -   1936607 TCCTAGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138625113 7 - 171630274 CCCTAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            183324 7 +   1154217 ACCCAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14009368 7 +  15232693 CCCTAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      252270 7 +    446445 ccctaga
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       91295 7 +   1371726 CCCTAGA
i proCoq1.NW_012150019v1   I 910 C 0
s dasNov3.JH569424            473181 7 +    935526 CCCGAGA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4438819 701 + 123392446 I
e canFam3.chr12             70368223 15 -  72498081 I
e otoGar3.GL873550          15317583 0 -  18854210 C

a score=1890036.000000
s hg38.chr6_KI270758v1_alt     20016 149 +     76752 AAACAATTTCACTAAATTCCAGGC----AAGTAAGTTGGTCCCTTTCCCACATACGCTGGGAGTAGATGATAGAATTCATAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATCCTATA--CTCTCTGACCACCCTTTGGTCAG
s panTro5.chr6             142719782 149 - 175400573 AAACAATTTCACTAAATTCCAGGC----AAGTAAGTTGGTCCCTTTCCCACATACGCTGGGAGTAGATGATAGAATTCATAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATCCTATA--CTCTCTGACCACCCTTTGGTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140871381 149 - 173848474 AAACAATTTCACTAAATTCCAGGC----AAGTAAGTTGGTCCCTTTCCCACATACGCTGGGAGTAGATGATAGAATTCATAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATCCTATA--CTCTCTGACCACCCTTTGGTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389140 149 +   2807050 AAACAATTTCACTAAATTCCAGGC----AAGTAAGTTGGTCCCTTTCCCACATACGCTGGGAGTAGGTGATAGAATTCATAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATTCTATA--CTCTCTGACCACCCTTTGGTCAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682064 149 - 122973662 aaacagtttcactaaattccaggc----aagtaagttggtccctttcccacatacattgggggtagatgatagaattcatagtaaagagcagatctattcaaggatatcacaaatctgcttcatcctata--ctctctgaccATCCTTTGGTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306124 149 - 172585720 aaacagtttcactaaattccaggc----aggtaagttggtccctttcccatatacattgggagtagatggtagaattcacagtaaagagcagatctattcaaggatatcacaaatctgcttcatcctaca--ctctctgaccACCCTTTGGTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138466435 149 + 170955103 AAACAGTTTCACTAAATTCCAGGC----AAGTAAGTTGGTCCCTTTCCCACATACATTGGGAGTAGATGATAGAATTCATAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATCCTACA--TTCTCTGACCGCCCTTTGATCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      182661 149 +    407600 AAACAGTTTCACTAAATTCCAGGC----AGGTAAGTTGGTCCCTTTCCCATATACATTGGGAGTAGATGGTAGAATTCACAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATCCTACA--CTCTCTGACCACCCTTTGGTCAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55031 149 +    463628 AAACAGTTTCACTAAATTCCAGGC----AAGTAAGTTGGTCCCTTTCCCACATACAATGGGAGCAGATGATAGAATTCACAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATCCTACA--CTCTCTGACCACCCTTTGGTCAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633224 149 +  71996105 aaacagtttcactaaattccaggc----aggtaagttggtccctttcccatatacattgggagtagatgatagaattcacagtaaagagcagatctattcaaggatatcacaaatctgcttcatcctaca--ctctctgaccACCCTTTGGTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       54656 149 -    115496 AAACAGTTTCACTAAATTCCAGGC----AAGTAAGTTGGTCCCTTTCCCACATACAATGGGAGCAGATGATAGAATTCACAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATCCTACA--CTCTCTGACCACCCTTTGGTCAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      683800 149 -   1936607 AAACAGTTTCACTAAATTCCAGGC----AGGTAAGTTGGTCCCTTTCCCATATACATTGGGAGTAGATGATAGAATTCACAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATCCTACA--CTCTCTGACCACCCTTTGGTCAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138625120 153 - 171630274 AAATGGTTTCACTAAATTCCAGGCTACTTACTTAGTTGGTCCCTTTCCCACATACTTTGGGAGTAGGTGATAGAATTCATAGTAAAGAGCAGATCTAATCAAAGATATCACAAATCTGCTTCATCCTATA--CTCTCTGACCACACTTTGGTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            183331 153 +   1154217 AAACAGTTTCACTAAATTCCAGGCTACTTACTTACTTGGTCCCTTTCCCACATACTTTGGGAGTAGGTGACAGAATTCATAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATGCTATA--CTCTCAGACCACCCTTTTGTCAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14009375 149 +  15232693 AAACGGTTTCACTAAATTCCAGGC----TACTTAGTTGGTCCCTTTCCCACATACTTTGGGAGTAGATGATAGAATTCATAGTAAAGAGCAGATCTATTCAAGGATATCACAAATCTGCTTCATCCTGTA--CTCTCTGACCACACTTTGGTCAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      252277 153 +    446445 aaacggtttcactaaattcaaggctacttacttagttggtccctttcccacatactttgggagtagatgatagaattcatagtaaagagcagatctattcaaggatatcacaaatctgcttcatcctata--ctctctgaccACACTTTGGTCAG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4439520 150 + 123392446 AAACAGTTTCACTAACTTCCAGAC----AAGTAAGTTCATCCTTTTCCCATATAATTTGGG-GTAGAAGATAGAATTCACAGTGAGGAGCAGATTTATTCCAGGATCTCACAAATCTGTTCCGTCCTCTAGGCTCTCTGACCACCCTTCGCTCAG
i micMur3.chr6             I 701 C 0
s proCoq1.NW_012150019v1       91302 150 +   1371726 AAACAGTTTCACTAAATTCCGGGC----AAGTAAGACCATCCCTTTCCCATATAATTTGGG-GTAGAAGATAGAATTCACAGTGAGGAGCAGATTTATTCCAGGATCTCACACATCTGTTCTGTCCTATATGCTCTCTGACCGCTCTTTGCTCAG
i proCoq1.NW_012150019v1   C 0 I 86
s dasNov3.JH569424            473188 131 +    935526 AAATAGATTCACCAAGTTCCAGGC----A--TTTGTCAGTCCCTTT-CCATATGTTTTGTGGGGAAA-GATAGAATACCTAGCAAAGAGCATAGCTATCCAAAGATAACACACACCTGCTCT----------CTCCTTGACCTTGCTTG------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e canFam3.chr12             70368223  15 -  72498081 I
e otoGar3.GL873550          15317583   0 -  18854210 C

a score=316925.000000
s hg38.chr6_KI270758v1_alt     20165 27 +     76752 TAGAGAGACAATAACAGAAACTTGTTT
s panTro5.chr6             142719931 27 - 175400573 TAGAGAGACAATAACAGAAACTTGTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140871530 27 - 173848474 TAGAGAGACAATAACAGAAACTTGTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389289 27 +   2807050 TAGAGAGACAATAACAGAAACTTGTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682213 27 - 122973662 TAGAGAGACAATAACAGAAACTTGTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306273 27 - 172585720 TAGAGAGACAATAACAGAAACCTGTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138466584 27 + 170955103 TAGAGAGACAATAATAGAAACCTATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      182810 27 +    407600 TAGAGAGACAATAACAGAAACCTGTTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55180 27 +    463628 TAGAGAGACAATAACAGAAACCTGTTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633373 27 +  71996105 TAGAGAGACAATAACAGAAACCTGTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       54805 27 -    115496 TAGAGAGACAATAACAGAAATCTGTTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      683949 27 -   1936607 TAGAGAGACAATAACAGAAACCTATTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138625273 27 - 171630274 TAGAGAGACAACAACAGAAACTTGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            183484 24 +   1154217 TAGAGAG---ACAACAGAAACTTGTTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14009524 24 +  15232693 TAGAGAG---ACAACAGAAACTTGTTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      252430 27 +    446445 TAGAGAGACAACAACAGAAACTTGTTT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4439670 27 + 123392446 TGAAGAGAGAATAGCAGAAACTTGTTT
i micMur3.chr6             C 0 I 133
s dasNov3.JH569424            473319 27 +    935526 TGGAGATAAAATAATAGAAACCTGTTT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       91452 86 +   1371726 I
e canFam3.chr12             70368223 15 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=105461.000000
s hg38.chr6_KI270758v1_alt     20192 13 +     76752 GTCCCATCATTCC
s panTro5.chr6             142719958 13 - 175400573 GTCCCATCATTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140871557 13 - 173848474 GTCCCATCATTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389316 13 +   2807050 GTCCCATCATTCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682240 13 - 122973662 TTCCCATCATTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306300 13 - 172585720 TTCCCATCATTCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138466611 13 + 170955103 TTCCCATCATTCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      182837 13 +    407600 TTCCCATCATTCC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55207 13 +    463628 TTCCCATCATTCC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633400 13 +  71996105 TTCCCATCACTCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       54832 13 -    115496 TTCCCATCATTCC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      683976 13 -   1936607 TTCCCATCATTCC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138625300 12 - 171630274 CT-CCAGCATTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            183508 12 +   1154217 TT-CCATCATttc
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14009548 12 +  15232693 TT-CCATCGTTTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      252457 12 +    446445 TT-CCATTATTTC
i aotNan1.NW_018508875v1   C 0 C 0
s dasNov3.JH569424            473346 13 +    935526 TTCCAATTATTTC
i dasNov3.JH569424         C 0 I 1
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4439697 133 + 123392446 I
e proCoq1.NW_012150019v1       91452 86 +   1371726 I
e canFam3.chr12             70368223 15 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=1702107.000000
s hg38.chr6_KI270758v1_alt     20205 196 +     76752 --------TTATTTACTTAtttattttattctactttaag-ttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtgccgtggtggttttctgctcccatcaacccgtcatctaggttttaagctcctcaagcactaggtatttgtcctaatgctct-cctccccttgcccccca-cccccccaacaggcc
s panTro5.chr6             142719971 195 - 175400573 --------TTATTTACTTAtttattttattctactttaag-ttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtgccatgttggttttctgctcccatcaacccgtcattt-ggttttaagctcctcaagcactaggtatttgtcctaatgctct-cctccccttgcccccca-cccccccaacaggcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140871570 195 - 173848474 --------TTATTTACTTAtttattttattctactttaag-ttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtgccatgttggttttctgctcccatcaacccgtcattt-ggttttaagctcctcaagcactaggtatttgtcctaatgctct-cctccccttgcccccca-cccccccaacaggcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389329 195 +   2807050 --------ATATTTACTTAtttattttattctactttaag-ttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtgccgtggtggttttctgctcccatcaacccatcatctaggttttaagctcctcaagcactaggtatttgtcctaatgctct-cctccccttgcccccca--ccccccaacaggcc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682253 195 - 122973662 --------TTATTTACTTAtttattttattatactttaag-ttctgggatacatgtgcagaacatgcaggtttgttacacaggtatacatgtgccgtggtggtttgctactcccatcaacccatcatctaggttttaagctcctcaagcactaggtatttgtcctaatgctct-cctgcccttgcccccca--ccccccaacaggcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306313 196 - 172585720 --------TTATTTAtttgtttgttttattatactttaagtttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtgccgtggtggtttgctgctcccattaacccgtcatctaggttttaagcttctcaagcactaggaatttgtcttaatgctctccctccctttgcccccca--ccccccaacagg-c
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138466624 197 + 170955103 --------TTATTTAtttatttgttttattatactttaagtttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtaccgtggtggtttgctgcccccatcaacccgtcatctaggttttaagctcctcaagcactaggaatttgtcttaatgctctccctccccttgcccccca--ccccccaacaggcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      182850 196 +    407600 --------TTATTTAtttgtttgttttattatactttaagtttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtgccgtggtggtttgctgctcccattaacccatcttctaggttttaagcttctcaagcactaggaatttgtcttaatgctctccctccctttgcccccca--ccccccaacagg-c
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55220 201 +    463628 ----TTATTTATTTAtttatttattttattatactttaagtttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtgccgtggtggtttgctgctcccatcaacccgtcgtctaggttttaagctcctcaagcactaggaatttgtcttaatgctctccctccccttgcccccca--cccaccaacaggcc
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633413 197 +  71996105 --------TTATTTAtttctttgttttattatactttaagtttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtgccgtggtggtttgctgctcccattaacccatcttctaggttttaagctcctcaagcactaggaatttgtcttaatgctctccctccctttacccctca--ccccacaacaggcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       54845 205 -    115496 ttatttatttatttatttatttattttattatactttaagtttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtgccgtggtggtttgctgctcccatcaacccgtcgtctaggttttaagctcctcaagcactaggaatttgtcttaatgctctccctccccttgcccccca--cccaccaacaggcc
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      683989 197 -   1936607 --------TTATTTAtttatttgttttattatactttaagtttctgggatacatgtgcagaacatgcaggtttgttacataggtatacatgtgctgtggtggtttgctgctcccatcaacccatcatctaggttttaagttcctgaagcaccaggaatttgtcttaatgctctccctccctttgcccctcg--ccccccaacaggcc
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138625312 193 - 171630274 --------Ttt----tttatttatttatttatactttaag-ttcttggacatatgtgcagaac-tgcaggtttgttacatagctatataagtgccatggtggtttgctgctcccatcaacccatcatctaggttttaagccctgcatgcattaggtgtttgtgctaatgctctccctccccttgcctcccatctccccttgcaggcc
i calJac3.chr4             C 0 I 1308
s saiBol1.JH378315            183520 189 +   1154217 --------ttt--------tttatttatttatactttaag-ttcttggatatatgttcagaac-tgcatgtttgttacatagctacataagtgccttggtggtttgctgctcccatcaacccatcacctaggttttaagctccgcatgcattaggtgtttgtgctaatgctctccctccccttgcctcccatctccccctacaggcc
i saiBol1.JH378315         C 0 I 21
s cebCap1.NW_016107339v1    14009560 193 +  15232693 --------Ttt----tttatttatttatttatactttaag-ttcttggatatatgtgcagaac-tgcatgctcgttacgtagctatataagtgccatggtggtttgctgctcccatcaacccctcatctaggttttaagctccgcatgcattaggggtttgtgctaatgctctccctccccttgcctcccatctccccctacaggcc
i cebCap1.NW_016107339v1   C 0 I 21
s aotNan1.NW_018508875v1      252469 197 +    446445 --------TTTTTTAtttatttatttatttatattttaag-ttcttggatatatgtgcagaac-tgcatgtttgttgtatagctatataagtgccatggtggtttgctgctcccatcaacccatcatctaggttttaagccccgcatgcattaggtgtttgtgctaatgctctccctccccttgcctctcatctcccccgacaggtc
i aotNan1.NW_018508875v1   C 0 I 21
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4439697 133 + 123392446 I
e proCoq1.NW_012150019v1       91452  86 +   1371726 I
e canFam3.chr12             70368223  15 -  72498081 I
e otoGar3.GL873550          15317583   0 -  18854210 C
e dasNov3.JH569424            473359   1 +    935526 I

a score=2293948.000000
s hg38.chr6_KI270758v1_alt     20401 230 +     76752 cctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaaaattcagtgtttggttttctgttcctgtgttattttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcattctttttcatggctgcatagtattccatggtgtatatgtggcacatttgctttatccactctatctttgatgTGTTTTCCCCATCATTTC
s panTro5.chr6             142720166 230 - 175400573 cctttgtccatgtgttctcattgttcaactcccacttatgagtgagaaaattcagtgtttggttttctgttcctgtgttattttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcattctttttcatggctgcatagtattccatggtgtatatgtggcacgtttgctttattcactctatctttgatgTGTTTTCCCCATCATTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140871765 230 - 173848474 cctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaaaattcagtgtttggttttctgttcctgtgttattttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcattctttttcatggctacatagtattccatggtgtatatgtggcacgtttgctttattcactctatctttgatgTGTTTTCCCCATCATTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389524 230 +   2807050 cctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaaaattcagtgtttggttttctgttcctgtgttattttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcattctttttcatggctgcatagtattccatggtgtatatgtggcacattttctttatccactctatctttgatgcatttTCCCCATCATTTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682448 230 - 122973662 cctgtgtccatatgttctcattgttcaactcccacttatgagtgagaaagttcaatgtttggtattctgttcctgtgttattttgctgagaatgatggtttccagcttcatccacgtccctgcaaaggacatgaactcattctttttcatggctacatagtattccatggtgtatatgtggcacattttctttatccactctatcactgatgTGTTTTCCCCATCATTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306509 229 - 172585720 cctgtgtccatgtgttctcatcgttcaactcccacttatgagtgagaaaattcagcatttggttttctgttcccgtgttattttgctgagaatgatggtttccagctttatccatgtccctgcaaaggacatgaactcgttctttttcatggctgcatagtattccatggcgtatatgtgccacattt-ctttatccactctatcattgaAGTGTTTTCCCCATCATTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138466821 229 + 170955103 cctgtatccatgtcttctcattgttcaactcccacttatgagtgagaaaattcagtgtttggttttctgttcctgtggtattttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaacttgttctttttcatggctgcatagtattccatggtgtatatgtgccacattt-ctttatccactctatcattgaAGTGTTTTCCCCATCATTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183046 229 +    407600 cctgtgtccatgtgttctcatcgttcaactcccacttatgagtgagaaaattcagcgtttggttttctgttcccgtgttattttgctgagaatgatggtttccagctttatccatgtccctgcaaaggacatgaactcgttctttttcatggctgcatagtattccatggcatatatgtgccacattt-ctttatccactctatcattgaAGTGTTTTCCCCATCATTTC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55421 229 +    463628 cctgtgtccacgtattctcattgttcaactcccacttatgagtgagaaaattcagtgtttggttttctgttcctgtgttattttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcattctttttcatggctgcatagtattccatggcgtatatgtgccacattt-ctttatccactctatcattgaAGTGTTTTCCCCATCATTTC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633610 229 +  71996105 cctgtgtccatgtgttcttattgttcatctcccacttatgagtgagaaaattcagcgtttggttttctgttcccgtgttattttgctgagaatgatggtttccagctttatccatgtccctgcaaaggacatgaactcgttctttttcgtggctgcatagtattccatggcgtatatgtgccacattt-ctttatccactctatcattgaAGTATTTTCCCCATCATTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55050 228 -    115496 cctgtgtccacgtattctcattgttcaactcccacttatgagtgagaaaattcagtgtttggttttctgttcctgtgttattttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcattctttttca-ggctgcatagtattccatggcgtatatgtgccacattt-ctttatccactctatcattgaAGTGTTTTCCCCATCATTTC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684186 229 -   1936607 cctgtgtccatgtgttctcattgttcaactcccacttatgagtgagaaaattcagcatttggttttctgttcctgtgttattttgctgagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcgttctttttcatggctgcatagtattccatggtgtatatgtgccacattt-ctttatccactctatcattgaAGTGTTTTCCCCATCATTTC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138626813 229 - 171630274 cctgtgtccatgtgttttcattgttcaccacccacttatgagtgacaacatgtgctgtttggttttctgttcctgtgttattttgctgagaatgatggtttccagcctcatccatgtccctgcaaaggacatgaactcattcttttttatggctgcatagtattccacggtatatatgtgccacattttctttatccagtctatcattgatgtgttttt-ccatcacttc
i calJac3.chr4             I 1308 C 0
s saiBol1.JH378315            183730 230 +   1154217 cctgtgtccatgtgttctcattgttcaactcccacttatgagtgacaacatgtggtgtttggttttctgttcctgtgttattttgctgagaatgacggtttccaacttcatccatgtccctgcaaaggacatgaactcattcttttttatgattgcatagtattccatggtatatatgtgccacattttctttatccagtctatcattgatgTTTTTTTCCCATCATTTT
i saiBol1.JH378315         I 21 C 0
s cebCap1.NW_016107339v1    14009774 230 +  15232693 cctgtgtccatgtgttctcattgttcaacccccacttatgagtgacaacatgtggtgtttggttttctgttcctgcgttattttgctgagaatggtggtttccaacttcatccatgtccctgcaaaggacatgaactcattcttttttatggttgcatagtattccatggtatatatgtgccacattttctttatccagtctatcatcgatgTGTTTTTCCCATCATTTC
i cebCap1.NW_016107339v1   I 21 C 0
s aotNan1.NW_018508875v1      252687 230 +    446445 cctgtgtccatgtcttctcattgttcaactcccacttctgagtcacaacatgtggtatttggttttctgttcctgtgttattttgctgagaatgatggtttccagcttcatccaagtccctgcaaaggacatgaactcatccttttttatggctgcatagtattccaaggtatatatgtgccacattttctttatccagtctatcactgatgTGTTTTTCCCATCATTTC
i aotNan1.NW_018508875v1   I 21 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4439697 133 + 123392446 I
e proCoq1.NW_012150019v1       91452  86 +   1371726 I
e canFam3.chr12             70368223  15 -  72498081 I
e otoGar3.GL873550          15317583   0 -  18854210 C
e dasNov3.JH569424            473359   1 +    935526 I

a score=513036.000000
s hg38.chr6_KI270758v1_alt     20631 50 +     76752 TTTATGAATTCTGCAAAAGAGGTGAACAACAGTGTCGCATGTCC----ATAAAC
s panTro5.chr6             142720396 50 - 175400573 TTTATGAATTCTGCAAAAGAGGTGAACAACAGTCTCACATGTCC----ATAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140871995 50 - 173848474 TTTATGAATTCTGCAAAAGAGGTGAACAACAGTCTCGCATGTCC----ATAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389754 50 +   2807050 TTTATGAATTCTTTAAAAGAGGTGAACAACAGTCTCACATGTCC----ATAAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682678 50 - 122973662 TTTATGAATTCTGCAAAAGAGGTGAACAAGAGTCTCGTATGTCC----ATAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306738 50 - 172585720 TTTATGAATTCTGCAAAAGAGGTGAAGAACAGTCTCACATGTCC----ATAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467050 50 + 170955103 TTTATGAATTCTGAAAAAGAGGTGAAGAGCAGTCTCACATGTCC----ATAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183275 50 +    407600 TTTATGAATTCTGCAAAAGAGGTGAAGAACAGTCTCACATGTCC----ATAAAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55650 50 +    463628 TTTATGAATTCTGCAAAAGAGGTGAAGAACAGCCTCACATGTCC----ATAAAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633839 50 +  71996105 TTTATGAATTCTGTAAAAGAGGTGAAGAACAGCCTCACATGTCC----ATAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55278 50 -    115496 TTTATGAATTCTGCAGAAGAGGTGAAGAACAGCCTCACATGTCC----ATAAAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684415 50 -   1936607 TTTATGAATTCTGCAAAAGAGGTGAAGAACAGTCTCACATGTCC----ATAAAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627042 50 - 171630274 tttatgaattctgcaaaagaggtgaagaacagtcttgcatgtat----GTAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            183960 54 +   1154217 TTTATGAATTCTGCAAAAGAGGTGAAGAACAGTCTTGCATGTCTGTCCGTACAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010004 50 +  15232693 TTTATGAATTCTGCAAAAGAGGTGAAGAACAGTCTTGCATGTCT----GTAAAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      252917 50 +    446445 TTTATGAATTCTGCAAAAGAGGTGAAGAACAGTCTTGCATGTCC----ATAAAT
i aotNan1.NW_018508875v1   C 0 C 0
s dasNov3.JH569424            473360 49 +    935526 TTTATAAATTGTGCTCAAAAGATAAGGAATGGTGTCACA-GCCC----ATAGAC
i dasNov3.JH569424         I 1 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4439697 133 + 123392446 I
e proCoq1.NW_012150019v1       91452 86 +   1371726 I
e canFam3.chr12             70368223 15 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=565614.000000
s hg38.chr6_KI270758v1_alt     20681 46 +     76752 AGATATCTGTGTTAATGGCCTCTTAGCTGATACTGAGGAAAGACCA
s panTro5.chr6             142720446 46 - 175400573 AGATATCTGTGTTAATGGCCTCTTAGCTGATACTGAGGAAAGACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872045 46 - 173848474 AGATATCTGTGTTAATGGCCTCTTAGCTGATACTGAGGAAAGACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389804 46 +   2807050 AGATATCTGTGTTAATGGCCTCTTAGTTGATACTGAGGAAAGACCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682728 46 - 122973662 AGATATCTGTGTTAATGGCCTCTTAGTTGATACTGAGGAAAGACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306788 46 - 172585720 AGATATCTGTGTCAATGGCCTCTTAGCTGATACTGAGGGAAGACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467100 46 + 170955103 AGATATCTGTGTTAATGACCTCTTAGCTGATACTGAGGAAAGACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183325 46 +    407600 AGATATCTGTGTCAATGGCCTCTTAGCTAATACTGAGGAAAGACCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55700 46 +    463628 AGATATCTGTGTTAATGGCCTCTTAGCTGATACTGAGGAAAGACCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633889 46 +  71996105 AGATATCTGTGTCAATGGCCTCTTAGCTGATACTGAGGAAAGACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55328 46 -    115496 AGATATCTGTGTTAATGGCCTCTTAGCTGATACTGAGGAAAGACCA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684465 46 -   1936607 AGATATCTGTGTTAATGGCCTCTTAGCTGATACTGAGGAAAGACCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627092 46 - 171630274 AGATGTCTGTGTTAATGGCCTCTTCGCTGATATTGCAGAAAGACCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184014 46 +   1154217 AGATATCTGTGTTAATGGCCTCTTAGCTGATATTGCAGAAAGACCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010054 46 +  15232693 AGATATCTGTGTTAATGGCCCCTTAGCTGATATTGCAGAAAGACCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      252967 46 +    446445 AGATATCTGTGTCAATGGCCTCTTAGCTGATATTGCAGAAAGACCA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       91538 46 +   1371726 AGATACCTGTGTTAATGGCCCCTTTGTTGAAATTGAGGAAAGACCA
i proCoq1.NW_012150019v1   I 86 I 25
s dasNov3.JH569424            473409 45 +    935526 CGATATCTCTATGAATGACCCCTTAGTTGAC-CTGAGGAAAGAAGA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4439697 133 + 123392446 I
e canFam3.chr12             70368223 15 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=260372.000000
s hg38.chr6_KI270758v1_alt     20727 25 +     76752 --CAAACATTGAAAACAAAACAACAAA
s panTro5.chr6             142720492 25 - 175400573 --CAAACATTGAAAACAAAACAACAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872091 25 - 173848474 --CAAACATTGAAAACAAAACAACAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389850 25 +   2807050 --CAAACATTGAAAACAAAACAACAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682774 24 - 122973662 --C-AACATTAAAAACAAAACAACAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306834 25 - 172585720 --CAAACATTAAAAACAAAACAACAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467146 25 + 170955103 --CAAACATTAAAAACAAAACAACAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183371 25 +    407600 --CAAACATTAAAAACAAAACAACAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55746 25 +    463628 --CAAACATTAAAAACAAAACAACAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633935 25 +  71996105 --CAAACATTAAAAACAAAACAACAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55374 25 -    115496 --CAAACATTAAAAACAAAACAACAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684511 25 -   1936607 --CAAACATTAAAAACAAAACAACAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627138 25 - 171630274 --CAAACATTAAAAACAAAACAACAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184060 25 +   1154217 --CAAACATTAAAAACAAAACAACAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010100 25 +  15232693 --CAAACATTAAAAACAAAACAACAAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253013 25 +    446445 --CAAACATTAAAAACAAAACAACAAA
i aotNan1.NW_018508875v1   C 0 C 0
s dasNov3.JH569424            473454 19 +    935526 TACACATTTTAAAAACATG--------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4439697 133 + 123392446 I
e proCoq1.NW_012150019v1       91584 25 +   1371726 I
e canFam3.chr12             70368223 15 -  72498081 I
e otoGar3.GL873550          15317583  0 -  18854210 C

a score=13073.000000
s hg38.chr6_KI270758v1_alt     20752 1 +     76752 C
s panTro5.chr6             142720517 1 - 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872116 1 - 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389875 1 +   2807050 C
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682798 1 - 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306859 1 - 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467171 1 + 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183396 1 +    407600 C
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55771 1 +    463628 C
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633960 1 +  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55399 1 -    115496 C
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684536 1 -   1936607 C
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627163 1 - 171630274 C
i calJac3.chr4             C 0 I 3
s saiBol1.JH378315            184085 1 +   1154217 C
i saiBol1.JH378315         C 0 I 3
s cebCap1.NW_016107339v1    14010125 1 +  15232693 C
i cebCap1.NW_016107339v1   C 0 I 3
s aotNan1.NW_018508875v1      253038 1 +    446445 C
i aotNan1.NW_018508875v1   C 0 I 3
s proCoq1.NW_012150019v1       91609 1 +   1371726 C
i proCoq1.NW_012150019v1   I 25 C 0
s dasNov3.JH569424            473473 1 +    935526 T
i dasNov3.JH569424         C 0 I 1
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4439697 133 + 123392446 I
e canFam3.chr12             70368223 15 -  72498081 I
e otoGar3.GL873550          15317583 0 -  18854210 C

a score=2116147.000000
s hg38.chr6_KI270758v1_alt     20753 166 +     76752 ATATGAAAAAGTATAAATCATGGTCATTGTCTGTTACTGGTCACATAGACATAATTATAACACGGTTTAGGAAATGGAGGCAGAACTGGCCATTTCAGCTGTGTTTCCTAGTCCAGTTTTCTTACAAGGTAATGGAGAAGAGTGTGCATATAACATGTTTTTTGTT
s panTro5.chr6             142720518 166 - 175400573 ATATGAAAAAGTATAAATCATGGTCATTGTCTGTTACTGGTCACATAGACATAATTATAACACGGTTTAGGAAATGGAGGCAGAACTGGCCATTTAAGCTGTGTTTCCTAGTCCAGTTTTCTTACAAGGTAATGGAGAAGAGTATGCATATAACATGTTTTTTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872117 166 - 173848474 ATATGAAAAAGTATAAATCATGGTCATTGTCTGTTACTGGTCACATAGACATAATTATAACACGGTTTAGGAAATGGAGGCAGAACTGGCCATTTAAGCTGTGTTTCCTAGTCCAGTTTTCTTACAAGGTAATGGAGAAGAGTATGCATATAACATGTTTTTTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2389876 166 +   2807050 ATATGAAAAAGTATAAATCATGGTCATTGTCTGTTACTGGTCACATAGACATAATTATAACACGGTTTAGGAAATGGAGGCAGAACTGGCCATTTCAGCTGTGTTTCCTAGTCCAGTTTTCTTACAAGATAATGGAGAAGAGTGTGCATATAACATGTTTTTTGTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682799 166 - 122973662 ATATGAAAAAGTATAAATCATGGTCATTGTCTGTTACTGGTCACATGGACATAATTATAACACAGTTTAGGAAATGGAGGCAGAACTGGCCTTTTAAGCTGTGTTTCCTAGTCCAGTTTTCTTACAAGATAATGGAGAAGAGTATGCATATAACATGTTTTTTGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139306860 164 - 172585720 ATATGAAAAAGTATAAATCATGGTCATTGCCTGTTACTGGTCACATAGACATAATTATAACACAGTTTAGGAAATGGAGGCAGAACTGGCCATTTAAGC--TGTTTCCTAGTCCAGTTTTCTTACAAGATAATGGAGAAGAGTATGCATATAACATGCTTTTTGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467172 166 + 170955103 ATATGAAAAAGTATAAATCATGGTCATTGTCTGTTACTGGTCACATAGACATATTTATAACACAGTTTAGGAAATGGAGGCAGAACTGGCCAATTAAGCTGTGTTTCCTAGTACAGTTTTCTTACAAGATAATGGAAAAGAGTATGCATATAACATGCTTTTTGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183397 166 +    407600 ATATGAAAAAGTATAAATCATGGTCATTGCCTGTTACTGGTCACATAGACATAATTATAACACAGTTTAGGAAATGGAGGCAGAACTGGCCATTTAAGCTGTGTTTCCTAGTCCAGTTTTCTTACAAGATAATGGTGAAGAGTATGTATATAACATGCTTTTTGTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55772 166 +    463628 ATATGAAAAAGTATAAATCATGGTCATTGCCTGTTACTGGTCACATAGACATAATTATAATACAGTTTAGGAAATGGAGGCAGAACTGGCCATTTAAGCTGTGTTTCCTAGTCCAGTTTTCTTACAAGATAATGGAGAAGAGTATGCATATAACATGCTTTTTGTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39633961 166 +  71996105 ATATGAAAAAGTATAAATCATGGTCATTGCCTGTTACTGGTCACATAGACATAATTATAACACAGTTTAGGAAATGGAGGCAGAACTGGCCATTTAAGCTGTGTTTCCTAGTCCAGTTTTCTTACAAGATAATGCAGAAGAGTATGCATATAACATGATTTTTGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55400 166 -    115496 ATTTGAAAAAGTATAAATCATGGTCATTGCCTGTTACTGGTCACATAGACATAATTATAACACAGTTTAGGAAATGGAGGCAGAACTGGCCATTTAAGCTGTGTTTCCTAGTCCAGTTTTCTTACAAGATAATGGAGAAGAGTATGCATATAACATGCTTGTTGTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684537 166 -   1936607 ATATGAAAAAGTATAAATCATGGTCATTGTCTGTTACTGGTCACATACACATAATTATAACACAGTTTAGGAAATGGAGGCAAAACTGGCCAATTAAGCTGTGTTTCCTAGCCCAGTTTTCTTACAAGATAATGGAAAAGAGTATGCATATAACATTCTTTTTGTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627167 166 - 171630274 ATATGAAAAAGGATAAATCATAGTCATTGTCTGTTACTGGTTACATAGACATAATTATAACACAGTTTAGGAAATGGAGGCAGAACTGGCCATTGACGCTGTGTTTCTTAGTCCAATTTTCTTACAAGGTAACAGAGAAGAGAAGACATATAACATGTTTTTTCTT
i calJac3.chr4             I 3 C 0
s saiBol1.JH378315            184089 166 +   1154217 ATATGAAAAAGTATAAATCATAGTCATTGTCTGTTACTGGTTACATAGACATAATTATAACACAGTTTAGGAAATGGAGGCAGAACTGGCCATTTATGCTGTGTTTCTTAGTCCAGTTTTCTTACAAGATAATAGAGAACAGAAGTCATATAACATGTTTTTTGTT
i saiBol1.JH378315         I 3 C 0
s cebCap1.NW_016107339v1    14010129 166 +  15232693 ATATGAAAACGTATAAATCACAGGCATTGTCTGTTACTGGTTACATAGACATAATTAGAACACAGTTTAGGAAATGGAGGCAGAGCTGGCCATTTATGCTGTGTTTCTTAGTCCAGTTTTCTTACAAGATAATAGAGAACGGAAGTCATATAACGTGTTTTTTGTT
i cebCap1.NW_016107339v1   I 3 C 0
s aotNan1.NW_018508875v1      253042 166 +    446445 ATATGAAAAGGTATAAATCATAGTCATTGTCTGTTACTGGTTACATAGACATAATTATAACACAGTTTGGGAAATGGAGGCAGAACTGGCCATTTAAGCTGTGTTTCTTAGTCCAGTTTTCTTACAAGATAATAGAGAAGAGAAGGCATATAGCATGTTTTTTGTT
i aotNan1.NW_018508875v1   I 3 C 0
s micMur3.chr6               4439830 166 + 123392446 ATATGAACAAGTACAAATTACAGTCATTGTCTGTCACTTGTCATGTAGGCATAATTATAACACAGTTTAGGAAACGGACATAGAACTAGCAATGTGAGTTGTCTTTCTTGGTCCAATTTTCTTACAGGATAATAGGGAAGAGTAGGTTTATAACACGGTTTATGTT
i micMur3.chr6             I 133 C 0
s proCoq1.NW_012150019v1       91610 166 +   1371726 ATATGAACAAGTATAAATTACAGTTGTTGTGTGTCACTTGTCATGTAGGCATAATTATAACACAGTTTAGGAAACGGACATAGAACTAGCAATGTGAGTTGTCTTTCTCAGTCCAATGTTCTCACAGGATAATAGGGAAGAGTAGGCTTATCACACGATTTTTGTC
i proCoq1.NW_012150019v1   C 0 C 0
s dasNov3.JH569424            473475 153 +    935526 ATCTGAAGAAGAATAATTTATAGTCATTGTCTGTTACTAGTTACACCGCCATAACTATAATACAGT-----------GAGCATAGCAGGCAATGTAAGCTATTTTTCTTAGTCAAATCTTCTTTCAGAGTAATACAGAAGAGTAGGTATAT-ACGTGCTTTTATT-
i dasNov3.JH569424         I 1 C 0
e mm10.chr17                34348491 900 +  94987271 I
e canFam3.chr12             70368223  15 -  72498081 I
e otoGar3.GL873550          15317583   0 -  18854210 C

a score=183805.000000
s hg38.chr6_KI270758v1_alt     20919 11 +     76752 AGATTAAGCAT
s panTro5.chr6             142720684 11 - 175400573 AGATTAAGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872283 11 - 173848474 AGATTAAGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390042 11 +   2807050 AGATTAAGCAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682965 11 - 122973662 AGATTAAGCAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307024 11 - 172585720 AAATTAAGCAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467338 11 + 170955103 AGATTAAGCAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183563 11 +    407600 AAATTAAGCAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55938 11 +    463628 AGATTAAGCAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634127 11 +  71996105 AAATTAAGCAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55566 11 -    115496 AGATTAAGCAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684703 11 -   1936607 AGATTAAGCAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627333 11 - 171630274 AGATTAAGCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184255 11 +   1154217 AGATTAAGCAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010295 11 +  15232693 AGATTAAGCAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253208 11 +    446445 AGATTAAGCAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4439996 11 + 123392446 AGATTAAGCAT
i micMur3.chr6             C 0 I 282
s proCoq1.NW_012150019v1       91776 11 +   1371726 AGATTAAGCAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15317583 11 -  18854210 AGACTAAGCAT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            473628 11 +    935526 AGATTAAACAT
i dasNov3.JH569424         C 0 I 11
e mm10.chr17                34348491 900 +  94987271 I
e canFam3.chr12             70368223 15 -  72498081 I

a score=11703.000000
s hg38.chr6_KI270758v1_alt     20930  3 +     76752 CA-----------C
s panTro5.chr6             142720695  3 - 175400573 CA-----------C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872294  3 - 173848474 CA-----------C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390053  3 +   2807050 CA-----------C
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682976  3 - 122973662 CA-----------C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307035  3 - 172585720 CA-----------C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467349  3 + 170955103 CA-----------C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183574  3 +    407600 CA-----------C
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55949  3 +    463628 CA-----------C
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634138  3 +  71996105 CA-----------C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55577  3 -    115496 CA-----------C
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684714  3 -   1936607 CA-----------C
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627344 14 - 171630274 CACACAGGGGTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184266 14 +   1154217 CACACAGGGGTCTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010306 14 +  15232693 CACACAGGGGTCTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253219 14 +    446445 CACAAAGGGGTCTC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       91787  3 +   1371726 CA-----------C
i proCoq1.NW_012150019v1   C 0 I 215
s otoGar3.GL873550          15317594  3 -  18854210 CA-----------C
i otoGar3.GL873550         C 0 I 10
s dasNov3.JH569424            473650  3 +    935526 CA-----------C
i dasNov3.JH569424         I 11 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440007 282 + 123392446 I
e canFam3.chr12             70368223 15 -  72498081 I

a score=1954221.000000
s hg38.chr6_KI270758v1_alt     20933 183 +     76752 TCTGTTAAGGAATAAACTTGAG----TTACTTTCAATCACTTTTAAGGATGCTGCTCTTTTTCCCA-AAGTAAAATTGATATTTGAGGCCTCAGTAAGTTCCATGTTATGTCCAATT------ATTTAGCATTACAGTGTCT--------------------GTCTGCTTCCAAGTGACT-AA---------AGACTTTTACTCTT-GGCCATGTGCC---ACATAAC-------------------
s panTro5.chr6             142720698 183 - 175400573 TCTGTTAAGGAATAAATTTGAG----TTACTTTCAACCACTTTTAAGGGTCCTGCTCTTTTTCCCA-AAGTAAAATTGATATTTGAGGCCTCAGTAAGTTCCATGTTATGTCCAATT------ATTTAGCATTACAGTGTCT--------------------GTCTGCTTCCAAGTGACT-AA---------AGACTTTTACTCTT-GGCCATGTGCC---ACATAAC-------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872297 183 - 173848474 TCTGTTAAGGAATAAATTTGAG----TTACTTTCAACCACTTTTAAGGGTCCTGCTCTTTTTCCCA-AAGTAAAATTGATATTTGAGGCCTCAGTAAGTTCCATGTTATGTCCAATT------ATTTAGCATTACAGTGTCT--------------------GTCTGCTTCCAAGTGACT-AA---------AGACTTTTACTCTT-GGCCATGTGCC---ACATAAC-------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390056 183 +   2807050 TCTGTTAAGGAATAAATTTGAG----TTACTTTCAACCACTTTTAAGGATCCTGCTCTTTTTCCCA-AAGTAAAATTGATATTTGAGGCCTCAGTAAGTTCCATGTTATGTCCAATT------ATTTAGCATCGCAGTGTCT--------------------GTCTACTTCCAAGTGACT-AA---------AGACTTTTACTCTT-GGCCATGTGCC---ACATGAC-------------------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45682979 183 - 122973662 TCTGTGAAGGAATAAATTTGAG----TTACTTTCAACCACTTTTAAGGATCCTGCTCTTTTTCCCA-AAGTAAAATTAATATTTGAGGCCTCAGTAAGTTCCATGTTATGTCCAATT------ATTTAGCATTACAGTGTCT--------------------GTCTACTTCCAAGTGACT-AA---------AGACTTTTACTCTT-GGCCATGTGCC---ACATAAC-------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307038 183 - 172585720 TCTGTTAAGGAATAAATCTGAA----TTACTTTCAACCACTTTTAAGGATCCTGCTCTTTTTCCCA-AAGGAAAGTTGATATTTGAGGCCTCAGTAAGTTCAATGTTCTGTCCAATT------ATTTAGCATTACAGTGCCT--------------------GTGTATCTCCAAGTGACT-AA---------AGACTTATACTCTT-GGCCATGTGCC---ACACTAC-------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467352 183 + 170955103 TCTATTAAGGAATAAATCGGAG----TTACTTTCAACCACTTTTAAGGATCCTGCTCTTTTTCCCA-AAGGAAAGTTGATATTTGAGGCCTCAGTAAGTTCCATGTTCTGTCCAATT------ATTCAGCATTACAGTGCCT--------------------GTGTATCTCCAAGTGACT-AA---------AGACTTGTACTCTT-GGCCATGTGCC---ACACAAC-------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183577 183 +    407600 TCTGTTAAGGAATAAATCTGAG----TTACTTTCAACCACTTTTAAGGATCCTGCTCTTTTTTCCA-AAGGAAAGTTGATATTTGAGGCCTCTGTAAGTTCCATGTTCTGTCCAATT------ATTCAGCATTACAGTGCCT--------------------GTGTATCTCCAAGTGACT-AA---------AGACTTGTACTCTT-GGCCATGTGCC---ACACAAC-------------------
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       55952 183 +    463628 TCTGTTAAGGAATAAATCTGAG----TTACTTTCAACCACTTTTAAGGATCCTGCTCTTTTTCCCA-AAGGAAAATTGATATTTGAGGCTTCAGTAAGTTCCATGTTCTGTCCAATT------ATTCAGTATTACAGTGCCT--------------------GTGTACCTCCAAGTGACT-AA---------AGACTTTTACTCTT-GGCCATGTGCC---GCACAAC-------------------
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634141 183 +  71996105 TCTGTTAAGGAATAAATCTGAA----TTACTTTCAACCACTTTTAAGGATCCTGCTCTTTTTCCCA-AAGGAAAGTTGATATTTGAGGCCTCAGTAAGTTCAATGTTCTGTCCAATT------ATTTAGCATTACAGTGCCT--------------------GTGTACCTCCAAGTGACT-AA---------AGACTTTTACTCTT-GGCCATGTGCC---ACACTAC-------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55580 183 -    115496 TCTGTTAAGGAATAAATCTGAA----TTACTTTCAACCACTTTTAAGGATCCTGCTCTTTTTCCCA-AAGGAAAATTGATATTTGAGGCTTCAGTAAGTTCCATGTTCTGTCCAATT------ATTCAGTATTACAGTGCCT--------------------GTGTACCTCCAAGTGACT-AA---------AGACTTTTACTCTT-GGCCATGTGCC---GCACAAC-------------------
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684717 183 -   1936607 TCTGTTAAGGAATAAATCTGAG----TTACTTTCAACCACTTTTAAGGATCCTGCTCTTTTTCCCA-AAGGAAAATTGATATTTGAGGCCTCAGTAAGTTCCATGTTCTGTCCAATT------ATTTAGCATTACAGTGCCT--------------------ATGTACCTCCAAGTGACT-AA---------AGACTTTTACTCTT-GGCCATGTGCC---ACACAAC-------------------
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627358 182 - 171630274 TCTGTCAAGGAATAA-----AG----TTATTTTCAGCCACTTTTAAGTATCCTACTCTTTTTCCCA-AAGTAAAATTGATATTTGAGGCATCAGTAAGTTCCATGTTCCATCCAATTTAAATAATT--GCATTACAGTGTCT--------------------GTGGACTTCCAAGTGACT-AA---------AGACTCTTACTCTT-GGCCATGTGCC---ACATCAC-------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184280 178 +   1154217 TCTGTCAAGGAATAA-----AG----TTATTTTCAACCACTTTTAAGTATTCTACTCTTTTTCCCA-AAGTAAAACTGGTATTTGAGGCACCAGTAAGTTCCATGTTCCATCCAATT------ATTTAACATTACAGAGTCT--------------------GTGTACTTTCAAGTGACT-AA---------AGACTTTTACTTTT-GGCCATGTGCC---ACATAAC-------------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010320 178 +  15232693 TCTGTCAAGGAATAA-----AG----TTATTTTCAACCACTTTTAAGTATTCTACTCTTTTTCCCA-AAGTAAAATTGGTATTTGAGGCATCAGTAAGTTCCATGTTCCATCCAATT------ATTTAGCATTGCAATGTCT--------------------GTGTACTTCCAAGTGACT-AA---------AGACTTTTACTCTT-GGCCATGTGCC---ACATAAC-------------------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253233 178 +    446445 TCTGTCAAGGAATAA-----AG----TTATTTTCAACCACTTTTAAGTATCCTACTCTTTTTCCCA-AAGTAAAGTTGGTATTTGAGGCATCAGTAAGTTCCATGTTCCATCCAGTT------ATTTAGCATTACGGTGTCT--------------------GTGCACTCCCAAGTGACT-AA---------AGACTTCTACTCTT-GGCCATGTGCC---ACATAAC-------------------
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15317607 192 -  18854210 CTCGTTAAGGAATAAACAAGAGGGGTTTTTTTTAAACCTCTTTTAAGTATCCTACTTTTTTCCCCATGAGTAAAATTGACATGTGAGGCACCAGTCACTGCTGTGCTCTGTTCAATC------ATTCAGCATTACAGTGTCA--------------------GTGGGTTTCTAAGTTACTGAA---------AGACGTCTACTCTT-GGGCATGTGCTGAGGCACAAC-------------------
i otoGar3.GL873550         I 10 I 10
s dasNov3.JH569424            473653 231 +    935526 TCCATTAGGGTATAAATCTGAA----ATTCTTCCAATATCTTTGAATTCCCCTGCTCTTTGTTCAT-GATTAAAATTAGTAGTCAAGGCATCAGTTGATTCTATACTTTAACAAATT------ACTCAGT-TTACGGAGTATCAGCCCTATATTTTTCCAAAGTGTACTTTCAAGGAACT-AACGATACACCAGATATCTACTCTTGGGACATGTGCC---ACATAAAAGACACAGGTGCTTAGAGC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440007 282 + 123392446 I
e proCoq1.NW_012150019v1       91790 215 +   1371726 I
e canFam3.chr12             70368223  15 -  72498081 I

a score=575029.000000
s hg38.chr6_KI270758v1_alt     21116 43 +     76752 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTTCTATAAG
s panTro5.chr6             142720881 43 - 175400573 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTTCTATACG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872480 43 - 173848474 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTTCTATACG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390239 43 +   2807050 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTTCTATAAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683162 43 - 122973662 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTTCTATAAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307221 43 - 172585720 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTCCTATAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467535 43 + 170955103 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTCCTATAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183760 43 +    407600 TGAAGATTATTCTTTCAGGTAAAAGTGGCAGGATTCCTATAAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56135 43 +    463628 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTTCTATAAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634324 43 +  71996105 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTCCTATAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55763 43 -    115496 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTTCTATAAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684900 42 -   1936607 TGAAGATTATTC-TTCAGGTGAAAGTGGCAGGATTCCTATAAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627540 43 - 171630274 TGAAGACTATTCTTTCAGGTGAAAGTAGCAAGATTTCTGTAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184458 43 +   1154217 TGAAGATTATTCTTTCGGGTGAAAGTAGCAGGATTTCTGTAAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010498 43 +  15232693 TGAAGATTATTCTTTCAGGTGAAAGTAGCAGGATTTCTGTAAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253411 43 +    446445 TGAAGATTATTCTTTCAGGTGAAAGTGGCAGGATTTCTGTAAG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       92005 43 +   1371726 TGAAGATTATTCTTTCCGGGGAAAATAACAGGATTTCTATAAG
i proCoq1.NW_012150019v1   I 215 I 20
s otoGar3.GL873550          15317809 42 -  18854210 TAAAGATTATCCTTT-TGGGGAAAATAACTGGATTTCTATAAG
i otoGar3.GL873550         I 10 C 0
s dasNov3.JH569424            473884 43 +    935526 TGAAGACGATTCTCTCAGAGGAAAATAGCAGCCTTTCTACAAG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440007 282 + 123392446 I
e canFam3.chr12             70368223 15 -  72498081 I

a score=284549.000000
s hg38.chr6_KI270758v1_alt     21159 29 +     76752 ACCCTTAAGAGGCTTTTCCTTTAGTTAGA
s panTro5.chr6             142720924 29 - 175400573 ACCCTTAAGAGGCTTTTCCTTTAGTTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872523 29 - 173848474 ACCCTTAAGAGGCTTTTCCTTTAGTTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390282 29 +   2807050 ACCCTTAAGAGGCTTTTCCTTTAGTTAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683205 29 - 122973662 ACCCTTAAGAGGCTTTTCCTTTAGTTAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307264 28 - 172585720 AACCTTAAGAGGCTTTTCCTTTA-TTAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467578 29 + 170955103 AACCTTAAGAGGCTTTTCCTTTAGTTAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183803 29 +    407600 AACCTTAAGAGGCTTTTCCTTTAGTTAGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56178 29 +    463628 AACCTTAAGAGGCTTTTCCTTTAGTTGGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634367 29 +  71996105 AACCTTAAGAGGCTTTTCCTTTAGTTAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55806 29 -    115496 AACCTTAAGAGGCTTTTCCTTTAGTTGGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684942 29 -   1936607 AACCTTAAGAGGCTTTTCCTTTAGTTAGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627583 29 - 171630274 AACCTTAGGAGGCTTTTCCTTCAGTCAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184501 29 +   1154217 AACCTTAGGAGGTCTTTCCTTTAGTCAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010541 28 +  15232693 AACCTTAGGAGGCTTTTCCTTTAGTCAG-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253454 29 +    446445 AACCTTAGGAGTCTTTTCCTTTAGTCAGA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15317851 20 -  18854210 ---------GACCTTTTTTTAAAGTCAGG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            473927 20 +    935526 ---------AATTCTTTCCTCCTGTCAGG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440007 282 + 123392446 I
e proCoq1.NW_012150019v1       92048 20 +   1371726 I
e canFam3.chr12             70368223 15 -  72498081 I

a score=45909.000000
s hg38.chr6_KI270758v1_alt     21188 3 +     76752 AGG
s panTro5.chr6             142720953 3 - 175400573 AGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872552 3 - 173848474 AGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390311 3 +   2807050 AGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683234 3 - 122973662 AGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307292 3 - 172585720 AGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467607 3 + 170955103 AGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183832 3 +    407600 AGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56207 3 +    463628 AGG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634396 3 +  71996105 AGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55835 3 -    115496 AGG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684971 3 -   1936607 AGG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627612 3 - 171630274 AGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184530 3 +   1154217 AGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010569 3 +  15232693 AGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253483 3 +    446445 AGG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       92068 3 +   1371726 AGG
i proCoq1.NW_012150019v1   I 20 C 0
s otoGar3.GL873550          15317871 3 -  18854210 AGG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            473947 3 +    935526 ATG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440007 282 + 123392446 I
e canFam3.chr12             70368223 15 -  72498081 I

a score=2461311.000000
s hg38.chr6_KI270758v1_alt     21191 172 +     76752 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCATGTCCAGACAATAGTGCCCCCAAACGACAGTCATTTCTGCCACCTTTTCTCTGGACATATG-CAGCATTGTTTGGAAATCTTTTTTCATTAAGCATGATCTGTGCTCATTTCTGAAGATCATAAGAATGTCTATGTAGCA
s panTro5.chr6             142720956 172 - 175400573 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCATGTCCAGACAATAGTGCCCCCAGATGACAGTCATTTCTGCCAACTTTTCTCTGGACATATG-CAGCATTATTTGGAAATCTTTTTTCATTAAGCATGATCTGTGCTCATTTCTGAAGATCGTAAGAATGTCTGTGTAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872555 172 - 173848474 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCATGTCCAGACAATAGTGCCCCCAGATGACAGTCATTTCTGCCAACTTTTCTCTGGACATATG-CAGCATTATTTGGAAATCTTTTTTCATTAAGCATGATCTGTGCTCATTTCTGAAGATCGTAAGAATGTCTGTGTAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390314 171 +   2807050 G-ATTTAGGGACTGGAGTTCTGAGAACTGGCCATGTCCAGACAATAGTGCTCCCAGAAGACAGTCATTTCTGCCACCTTTTCTCTGGACATATG-CAGCATTGTTTGGAAATCTTTTCTCATTAAGCATGATCTCTGCTCATTTCTGAAGATTGTAAGAATGTCTGTGTAGCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683237 172 - 122973662 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCATGTCCAGACAATAGTGCCCCCAGACGACAGTCATTTCTGCCACCTTTTCTCTGGACATATG-CAGCATTATTTGGAAATCTTTTTTCATTAAGCATGATCTCTGCTCATTTCTGAAGATCATAAGAATGTCTGTGTAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307295 172 - 172585720 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCATGTCCAGACCATAGTGCCCCCAGACGACAGTCATTTCTGCCACCTTTTCTCCGGACATAAG-CAGCATTATTTGGAAATCTTTTTTCATTAAGCATGATCTCTGCTCATTTCTGAATATCGTAAGAATGTCTGTGTAGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467610 172 + 170955103 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCACGTCCAGACCATAGTGCCCCCAGATGACAGTCATTTCTGCCACCTTTTCTCCGGACATAAG-CAGCATTATTTGGAAATCTTTTTTCATTAAGCATGATCTCTGCTCATTTCTGATTATCATAAGAATGTCTGTGTAGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      183835 172 +    407600 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCATGTCCAGACCATAGTGCCCCCAGATGACAGTCATTTCTGCCACCTTTTCTCTGGACATAAG-CAGCATTATTTGGAAATCTTTTTTCATTAAGCATGATCTCTGCTCATTTCTGAATATCATAAGAATGTCTGTGTAGTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56210 172 +    463628 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCACGTCCAGACCATAGTGCCCCCAGACGACAGTCGTTTCTGCCACATTTTCTCCGGACATAAG-CAGCATTATTTGGAAATCTTTTTTCATTAAGCATGATCTCTGCTCATTTCTGAATATCATAAGAATGTCTGTGTAGTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634399 172 +  71996105 GAATTTAGGGACTCGAGTTCTGAGAACTGGCCATGTCCAGACCATAGTACCCCCAGACGACAGTCGTTTCTGCCACCTTTTGTCCGGACATATG-CAGCATTATTTGGAAATCCTTTTTCATTAAGCATGATCTCTGCTCATTTCTGAATATCATAAGAATGTCTGTGTAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       55838 172 -    115496 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCACGTCCAGACCATAGTGCCCCCAGACGACAGTCGTTTCTGCCACATTTTCTCCGGACATAAG-CAGCATTATTTGGAAATCTTTTTTCATTAAGCATGATCTCTGCTCATTTCTGAATATCATAAGAATGTCTGTGTAGTA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      684974 172 -   1936607 GAATTTAGGGACTGGAGTTCTAAGAATTGGCCATGTCCAGACAATAGTGCCCCCAGACGACAGTCATTTCTGCCACATTTTATCTGGACATATG-CAGCATTATTTGGAAATCTTTTTTCATTAACCATGATCTCTGCTCATTTCTGAATATCATAAGAATGTCTGTGTAGCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627615 171 - 171630274 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCATGTCCAGACGATGGTG-CCCCAGACAGCAGTCACTTCTGCCACCTTTTCTCTGGACATATG-CAGCATTATTTGGAAATCTTAGTTCATTAAGCATGATCTCTGCTCATTTCTGAAGTTAGTAAGAATGTCTGTGTTGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184533 172 +   1154217 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCATGTCCAGACAATGGTGCCCCCAGACAGCAGTCATTTCTGCCACCTTTTCTCTGGACATATG-CAGTATTATTTCAAAATCTTTGTTCATTAAGCATGATCTCTGCTCATTTCTGAAGATTGTAAGAATGTCTGTGTTGCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010572 172 +  15232693 GAATTTAGGGACTGGAGTTCTGAGAACTGCCTATGTGCATACAATGGTGCCCCTAGACAACAGTCATTTCTGCCACCTTTTCTCTGGACATATG-CAGCATTATTTCAAAATCTTTGTTCATTAAGCATGATCTCTGCTCATTTCTGAAGATTGTAAGAATGTCTGTGTTGCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253486 172 +    446445 GAATTTAGGGACTGGAGTTCTGAGAACTGGCCATGTCCAGACAATGGTGTCCCCAGACAACAGTCATTTCTGCCACCTTTTCTCTGGACATATG-CAGCATTATTTCGAAATCTTTGTTCATTAAGCATGATCTCTGCTCATTTCTGAAGATCGTAAGAAAGTCTGTGTTGCA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4440289 170 + 123392446 GAATTCAGGGACTGGAGTTCTGAGAGCTGACTGTGTCCAGACAATAGTGTCATCAGACAATAGTCGTTTCTGCCACCATTTCTCCGGGCATATG-CAGCATTATCTGGAACTCTTTGCCCATTAAGCGTGATCTCTGCTCATTTCTGAAGAC--TAAGAATGTCTGTGTAGCA
i micMur3.chr6             I 282 I 279
s proCoq1.NW_012150019v1       92071 172 +   1371726 GAATTCAGGGACTGGAGTTCTGAGAACTGACTGTGTCCAGACAATGGTGCCATCAGACAATAGTCATTTCTGCCACCTTTTCTCTGGGCTTCTG-CAGCATTACCTGGAAATGTTTGTCCATTAAGCATGCTCTCTGCTCATTTCTGACGACTGTAAGAATGTCTGTGTAGAA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15317874 170 -  18854210 TAGTTTAGGGACTGGAGTTCTGAGAACTGACTATGTCCAGACAATAGTGTCACCAGACAATAGTCGTTTCTGCCACTTTTTCTCTGGGAATATG-CAGTGTTATTCGGAAATGTTTGTCCATTAAGCATGATCTCTGCTCATTTCTG--GTCTGAAAGAATGTCTGTGTAGTA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            473950 162 +    935526 TACTTTGGGGCCTGGGGTTTTGAGACCTGACCGTGTCCAGACAATAACGCC-----------GTAGTTTCTGCCCCCATTTCACTTTGAAAACGTCAGCATTCTTTGGAAATGTTTCTCCATTAAATGTGATTTATGCTCATTTCTAAACATTGTAAGAATGCCTGTATAGTA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e canFam3.chr12             70368223  15 -  72498081 I

a score=343735.000000
s hg38.chr6_KI270758v1_alt     21363 30 +     76752 GTCTTTTTCTACTCTTAATTCTTTTCTAAA
s panTro5.chr6             142721128 30 - 175400573 GTCTTTTTCTATTCTTAATTCTTTTCTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872727 30 - 173848474 GTCTTTTTCTATTCTTAATTCTTTTCTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390485 30 +   2807050 GTCTTTTTCTACTCTTAATTCTTTTCTAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683409 30 - 122973662 GTCTTTTTCTACTCTTAATTCTTTTCTAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307467 30 - 172585720 GTCTTTTTCTACTTTTAATTCTTTTCTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467782 30 + 170955103 GTCTTTTTCTACTTTTAATTCTTTTCTAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184007 30 +    407600 GTCTTTTTCTACTTTTAATTCTTTTCTAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56382 30 +    463628 GTCTTTTTCTACTTTTAATTCTTTTCTAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634571 30 +  71996105 GTCTTTTTCTACTTTTAATTCTTTTCTAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56010 30 -    115496 GTCTTTTTCTACTTTTAATTCTTTTCTAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685146 30 -   1936607 GTCTTTTTCTACTTTTAATTATTTTCTAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627786 29 - 171630274 GTCCTCTTCTACTC-TAATTCTTTTCTGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184705 29 +   1154217 GTCCTTTTCTACTC-TAATTCTTTTCTGAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010744 29 +  15232693 ATCCTTTTCTGCTC-TAATTCTTTTCTGAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253658 29 +    446445 GTCCTTTTCTACTC-TAATTCTTTTCTGAA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       92243 29 +   1371726 GTCCTTTTCCACTCAT-ATCCTTTTCTAAA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15318044 29 -  18854210 GTCCTTTTCTACTCTT-ATGCTTTTCTAAG
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            474112 28 +    935526 ACCTTTTTCTGCTCCT--TCCCTCTCGAAA
i dasNov3.JH569424         C 0 I 151
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440459 279 + 123392446 I
e canFam3.chr12             70368223 15 -  72498081 I

a score=10285.000000
s hg38.chr6_KI270758v1_alt     21393 1 +     76752 A
s panTro5.chr6             142721158 1 - 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872757 1 - 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390515 1 +   2807050 A
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683439 1 - 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307497 1 - 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467812 1 + 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184037 1 +    407600 A
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56412 1 +    463628 A
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634601 1 +  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56040 1 -    115496 A
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685176 1 -   1936607 A
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627815 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184734 1 +   1154217 A
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010773 1 +  15232693 A
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253687 1 +    446445 A
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       92272 1 +   1371726 A
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15318073 1 -  18854210 A
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440459 279 + 123392446 I
e canFam3.chr12             70368223 15 -  72498081 I
e dasNov3.JH569424            474140 151 +    935526 I

a score=331115.000000
s hg38.chr6_KI270758v1_alt     21394 28 +     76752 GGTATAATTGAGAGTAA-GAAAC-AAAAAA
s panTro5.chr6             142721159 28 - 175400573 GGTATAATTGAGAGTAA-GAAAC-AAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872758 28 - 173848474 GGTATAATTGAGAGTAA-GAAAC-AAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390516 28 +   2807050 GGTATAATTGAGAGTAA-GAAAC-AAAAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683440 29 - 122973662 GGTATAATTGAGAGTAAGGAAAC-AAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307498 28 - 172585720 GGTATAATTGAGAGTAA-GAAAC-AAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467813 28 + 170955103 GGTATAATTGAGAGTAA-GAAAC-AAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184038 29 +    407600 AGTATAATTGAGAGTAA-GAAACAAAAAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56413 28 +    463628 GGTATAATTGAGAGTAA-GAAAC-AAAAGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634602 28 +  71996105 GGTATAATTGAGAGTAA-GAAAC-AAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56041 28 -    115496 GGTATAATTGAGAGTAA-GAAAC-AAAAGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685177 28 -   1936607 GGTATAATTGAGAGTAA-GAAAC-AAAAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627816 29 - 171630274 TGTATAATTGAGATTAA-GCAACAAAAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184735 29 +   1154217 GGTATAATTGAGATTAA-GAAACAAAAAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010774 29 +  15232693 GGTATAATTGAGATTAA-GAAACAAAAAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253688 29 +    446445 GGTATAATTGAGATTAA-GAAACAAGAAAA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       92273 28 +   1371726 GGTATAACTGAGGGTAA-GAAAG-TAAAAC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15318074 28 -  18854210 GGTATAATTGAGGGTAA-GAAAC-TGAAAC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            474291 28 +    935526 GGAATAATTGCAGGTGG-GAGAC-TGAAAA
i dasNov3.JH569424         I 151 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440459 279 + 123392446 I
e canFam3.chr12             70368223 15 -  72498081 I

a score=352147.000000
s hg38.chr6_KI270758v1_alt     21422 31 +     76752 CTAGAAGATGGTTTATTTAAGGTACATGGTT
s panTro5.chr6             142721187 31 - 175400573 CTAGAAGACGGTTTATTTAAGGTACATGGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872786 31 - 173848474 CTAGAAGACGGTTTATTTAAGGTACATGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390544 31 +   2807050 CTAGAAGACGGTTTATTTAAGGTACATGGTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683469 31 - 122973662 CTAGAAGACGGTTTATTTAATGTACACGGTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307526 31 - 172585720 CTAGAAGATGGTTTATTTCATGTACACGGTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467841 31 + 170955103 CTAGAAGATGGTTTATTTCATGTACACGGTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184067 31 +    407600 CTAGACGATAGTTTATTTCATGTACACGGTC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56441 31 +    463628 CTAGAAGATGGTTTATTTCATGTACACGGTC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634630 31 +  71996105 CTAGAAGATGGTTTATTTCATGTACACGGTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56069 31 -    115496 CTAGAAGATGGTTTATTTCATGTACACGGTC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685205 31 -   1936607 CTAGAAGATGGTTTATTTCATGTACACGGTC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627845 30 - 171630274 CTGGAAGAGAGTTTATTTAATGTAC-CAGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184764 30 +   1154217 -TAGAATATAGTTTATTTAATGTACACAGTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010803 31 +  15232693 CTAGAATATAGTTTATTTAATGTACACAGTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253717 29 +    446445 CTAGAAGATAGTTTATTTAATGTACACAG--
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       92301 31 +   1371726 CTTGGAGATGGTCTATTTAATGTATTTGGTC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15318102 31 -  18854210 CTTGAAGATGGTTTATTTAATGTATTTGGTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70368238 30 -  72498081 CTTGAAGATGTTTTA-TTAATGAATTTGGTC
i canFam3.chr12            I 15 C 0
s dasNov3.JH569424            474319 31 +    935526 TATGAATGTGACTTATTTAGTGTATTTTATC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440459 279 + 123392446 I

a score=1099152.000000
s hg38.chr6_KI270758v1_alt     21453 81 +     76752 AGCAATCATAGTAAAGGAGCTGAGTTCTAAACATGTAAAACACTTACTGTAGTGAAGTTAG---GAAGACAAGGA-GTGTGAAGA
s panTro5.chr6             142721218 81 - 175400573 AGCAATCATAGTAAAGGAGCTGGGTTCTAAACATGTAAAACACTTACTGTAGTGAAGTTAG---GAAGACAAGGA-GTGTGAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872817 81 - 173848474 AGCAATCATAGTAAAGGAGCTGGGTTCTAAACATGTAAAACACTTACTGTAGTGAAGTTAG---GAAGACAAGGA-GTGTGAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390575 84 +   2807050 AGCAATCATAGTAAAGGAGCTGGGTTCTAAACACGTAAAACACTTACTGTAGCAAAGTTAGGAAGAAGACAAGGA-GTGTGAAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683500 84 - 122973662 AGCAATCATAGTAAAGGAGCTTGGTTCTAAACACGTAAAACACTTACTGTAGCAAAGTTGGGAAGAAGACAAGGA-GTGTGAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307557 84 - 172585720 AGCAATCATAGTAAAGGAGCTGGGTTCCAAACATGTAAAACACTTACTGTAGCGAAGTTAGGAAGAAGACAAGGa-gggtgaaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467872 84 + 170955103 AGCAATCATAGTAAAGGAGCTGGGTTCCAAACATGTAAAACACTTACTGTAGCGAAGTTAGGAAGAAGACAAGGa-gggtgaaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184098 84 +    407600 AGCAATCATAGTAAAGGAGCCGGGTTCCAAACATGTAAAACACTTACTGTAGCGAAGTTAGGAAGAAGACAAGGa-gggtgaaga
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56472 84 +    463628 AGCAATCATAGTAAAGGAGCTGGGTTCCAAACATGTAAAACACTTACTGTAGCGAAGTTAGGAGGAAGACAAGGa-gggtgaaga
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634661 85 +  71996105 AGCAATCATAGTAAAGGAGCTGGGTTCCAAACATGTAAAACACTTACTGTAGCAAAGTTAGGAGGAAGACAAGGAGGGGTGAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56100 84 -    115496 AGCAATCATAGTAAAGGAACTGGGTTCCAAACATGTAAAACACTTACTGTAGCGAAGTTAGGAGGAAGACAAGGa-gggtgaaga
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685236 84 -   1936607 AGCAATCATAGTAAAGGAGCTGAGTTCTAAACATGTAAAACACTTACTGTAGCGAAGTTAGGAAGAAGACAAGGa-gtgtgaaga
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627875 78 - 171630274 AGCAATCATAGCAAAGGAGCTGGGTTCTAAACATGTAACA------CTGTAGCGAAGTTAGGAAGAACACAAAGA-GTGTGAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184794 80 +   1154217 AACAATCATAGCAAAGGAGCTGGGTTCTAAACATGTAAAAT----GCTGTAGTGAAGTTAGGAAGAAGACAAGGA-GTGTGAAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010834 80 +  15232693 AACAATCATAGCGAAGGAGCTGGGTTCTAAACATGCAAAAC----ACTGTAGCGAAGTTAGAAAGAAGACAAGGA-GTGTGAAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253746 78 +    446445 --CAATCATAGCAAAGGAGCTGGGTTCTAAACATGTAAAAC----ACGGTAGCAAAGTTAGGAAGAAGACAAGGA-GTGTGAAGA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4440738 84 + 123392446 AGCAATCATAATAAAGAAGCTGGGTCCTAAACACGCAAAACACCAATTGCAGAAAAGTTAGGAAGGAGACAAGAA-ATGTGAAGA
i micMur3.chr6             I 279 C 0
s proCoq1.NW_012150019v1       92332 84 +   1371726 AGCAATCGTAATAAAGGAGCTGGGTCCTAAACACGCAAAACACTGATTGCAGAGAACTTAGGAAGGAGACAAGAA-ACATGAAGG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15318133 61 -  18854210 AGCAATCATAATATGGGAGCTGGGCCCTAGACAAGCAAAACACTTATCATAAAGAAGTCAG------------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70368268 78 -  72498081 AGCAATTGTAGCCAAGGAGCTGGGTTCTAAACATGCAAAACACTCAC---AGAGAATTTAA---GAGGGCAGAGA-GTGTGAAGA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            474350 76 +    935526 TGAAATGAGAGTGAAGGAGCTGGGTTCTAGATAC-CAAAATCATTGTCAGAGAGAAATTAA---GAAGACA-----GCATGAAGA
i dasNov3.JH569424         C 0 I 1485
e mm10.chr17                34348491 900 +  94987271 I

a score=555439.000000
s hg38.chr6_KI270758v1_alt     21534 39 +     76752 TGAGAAGTT-AGAAGTGTGGAGAAGGAATC-----ACTAGAGCCT
s panTro5.chr6             142721299 39 - 175400573 TGAGAAGTT-AGAAATGTGGAGAAGGAATC-----ACTAGAGCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872898 39 - 173848474 TGAGAAGTT-AGAAATGTGGAGAAGGAATC-----ACTAGAGCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390659 39 +   2807050 TGAGAAGTT-AGAAGTGTGAAGAAGGAATC-----ACTAGAGCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683584 39 - 122973662 TGAGAAGTT-AGAAGTGTGAAGAAGGAATC-----ACTAGAGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307641 39 - 172585720 tgagaagtt-agaagtgtgaagaatgaaTC-----ACTAGAGCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467956 39 + 170955103 tgagaagtt-agaagtgtgaagaatgaaTC-----ACTAGAGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184182 39 +    407600 tgagaagtt-agaagtgtgaagaatgaaTC-----ACTAGAGCCT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56556 39 +    463628 tgagaagtt-agaagtgtgaagaatgaaTC-----ACTAGAGCCT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634746 39 +  71996105 TGAGAAGTT-AGAAGTGTGAAGAATGAATC-----ACTAGAGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56184 39 -    115496 tgagaagtt-agaagtgtgaagaatgaaTC-----ACTAGAGCCT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685320 39 -   1936607 tgagaagtt-agaagtgtgaagaatgaaTC-----ACTAGAGCCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627953 39 - 171630274 TGAGAAGTT-AGAAATGTGAAGAATGAATC-----ACTAGAGCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184874 39 +   1154217 TGAGAAGTT-AGAAATGTGAAGAATGAATC-----ACTAGAGCCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010914 39 +  15232693 TGAGAAGTC-AAAAATGTGAAGAATGAATC-----ACTAGAGCCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253824 39 +    446445 CGAGAAGTT-AGAAATGTGAAGAATGAATC-----ACTAGAGCCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4440822 40 + 123392446 TGAGAAGTTAAGAAATGTGAAGAATCAATC-----GCTAGAGCCT
i micMur3.chr6             C 0 I 93
s proCoq1.NW_012150019v1       92416 40 +   1371726 TGAGAAGTTAAGAAATGTGAAGAATCAATC-----GCTAGAGCCT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15318194 42 -  18854210 ---GAAGTCAAGTAATGTGCAGGATCAATCATTAGACTGGAGCCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70368346 39 -  72498081 TGAGATGTTAAGAAATATGAAGAGTGAATC-----ATTAGGCCC-
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=56589.000000
s hg38.chr6_KI270758v1_alt     21573 4 +     76752 CCTG
s panTro5.chr6             142721338 4 - 175400573 CCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872937 4 - 173848474 CCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390698 4 +   2807050 CCTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683623 4 - 122973662 CCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307680 4 - 172585720 CCTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467995 4 + 170955103 TCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184221 4 +    407600 CCTG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56595 4 +    463628 TCTG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634785 4 +  71996105 TCTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56223 4 -    115496 TCTG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685359 4 -   1936607 CCTG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627992 4 - 171630274 CCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184913 4 +   1154217 CCTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010953 4 +  15232693 CCTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253863 4 +    446445 CCTG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       92456 4 +   1371726 CCTG
i proCoq1.NW_012150019v1   C 0 I 1115
s otoGar3.GL873550          15318236 4 -  18854210 CCTG
i otoGar3.GL873550         C 0 I 15
s canFam3.chr12             70368385 4 -  72498081 CTTG
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440862 93 + 123392446 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=197055.000000
s hg38.chr6_KI270758v1_alt     21577 21 +     76752 -----------ATAAGAAAGATGGTAGAAAAT
s panTro5.chr6             142721342 21 - 175400573 -----------ATAAGAAAGATGGTAGAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872941 21 - 173848474 -----------GTAAGAAAGATGGTAGAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390702 21 +   2807050 -----------ATAAGAAAGGTAGTAGAAAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683627 21 - 122973662 -----------ATAAGAAAGGTAGTAGAAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307684 21 - 172585720 -----------ATAAGAAAGGTAGTAGAAAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138467999 21 + 170955103 -----------ATAAGAAAGGTAGTAGAAAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184225 21 +    407600 -----------ATAAGAAAGGTAGTAGAAAAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56599 21 +    463628 -----------ATAAGAAAGGTAGTAGAAAAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634789 21 +  71996105 -----------ATAAGAAAGGTAGTAGAAAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56227 21 -    115496 -----------ATAAGAAAGGTAGTAGAAAAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685363 21 -   1936607 -----------ATAAGAAAGGTAGTAGAAAAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138627996 20 - 171630274 -----------ATGAGAAAGGCAGCA-AAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184917 20 +   1154217 -----------ATGAGAAAGGTAGTA-AAAAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010957 20 +  15232693 -----------ATGAGAACGGTAGTA-AAAAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253867 20 +    446445 -----------ATGAGAAAGGTAGTA-AAAAC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15318255 20 -  18854210 -----------AAGAGAAATGTAGTA-GGAAT
i otoGar3.GL873550         I 15 C 0
s canFam3.chr12             70368389 32 -  72498081 ATGGACTGGTTTAGGGGAAGGTGATAGAAAAA
i canFam3.chr12            C 0 I 83
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440862 93 + 123392446 I
e proCoq1.NW_012150019v1       92460 1115 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=143363.000000
s hg38.chr6_KI270758v1_alt     21598 19 +     76752 GATTTTTTAAAGTAC----TTAA
s panTro5.chr6             142721363 19 - 175400573 GATTTTTTAACGTAC----TTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872962 19 - 173848474 GATTTTTTAACGTAC----TTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390723 19 +   2807050 GATTTTTTAAAGTAC----TTAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683648 19 - 122973662 GATTTTTTAAAATAC----TTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307705 18 - 172585720 GA-TTTTTAAAGTAC----TTAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468020 18 + 170955103 GA-TTTTTAAAGTAC----TTAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184246 18 +    407600 GA-TTTTTAAAGTAC----TTAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56620 18 +    463628 GA-TTTTTAAAGTAC----TTAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634810 18 +  71996105 GA-TTTTTAAAGTAC----TTAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56248 18 -    115496 GA-TTTTTAAAGTAC----TTAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685384 18 -   1936607 GA-TTTTTAAAGTAC----TTAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628016 22 - 171630274 GA-TTTTTTAAGTACTTAATTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184937 15 +   1154217 GA----TTTAAGTAC----TTAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010977 18 +  15232693 GA-TTTTTTAAGTAC----TTAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253887 18 +    446445 GA-TTTTTTAAGTAC----TTAA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15318275 17 -  18854210 GA--TGGAGAATTAC----TTAA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440862 93 + 123392446 I
e proCoq1.NW_012150019v1       92460 1115 +   1371726 I
e canFam3.chr12             70368421 83 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=426484.000000
s hg38.chr6_KI270758v1_alt     21617 36 +     76752 GTAGGTAAGATTTCAAATCCAAATGTCGTGAATGAG
s panTro5.chr6             142721382 36 - 175400573 GTAGGTAAGATTTCAAATCCAAATGTCGTGAATGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140872981 36 - 173848474 GTAGGTAAGATTTCAAATCCAAATGTCGTGAATGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390742 36 +   2807050 GTGGGTAAGATTTCAAATCCAAATGTCGTGAATGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683667 36 - 122973662 GTAGGTAAGATTTCAAATCCAAATGTCGCGAATGAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307723 36 - 172585720 GTAGGTAAGATTTCAAATCCAAATGTCGTGAATGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468038 36 + 170955103 GTAGGTAAGATTTCAAATCCAAAAGTCGTGAATGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184264 36 +    407600 GTAGGTGAGATTTCAAATCCAAATGCCATGAATGAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56638 36 +    463628 GTAGGTAAGATTTCAAATCCAAATGTCATGAATGAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634828 36 +  71996105 GTAGGTAAGATTTCAAATCCAAATGTCGTGAATGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56266 36 -    115496 GTAGGTAAGATTTCAAATCCAAATGTCATGAATGAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685402 36 -   1936607 GTAGGTAAGATTTCAAATCCAAATGTCGTGAATGAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628038 36 - 171630274 GTAGGTAAGATTTCAAATCCAAATGTCATGAATGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184952 36 +   1154217 GTAGGTAAGATTTCAAATCCAAATGTCATGAATGAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14010995 36 +  15232693 GTAGGTAAGATTTCAAATCCAAATGTCACGAATGAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253905 36 +    446445 ATAGGTAAGATTTCAAATCCAAATGTCATGAATGAA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15318292 35 -  18854210 GTAGTTAAGATTTT-AGTCTGAATGTCATAAGCCAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70368504 36 -  72498081 GGAACAAAAGTTTCAAGTCTAAATATTGTGAATGAA
i canFam3.chr12            I 83 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440862 93 + 123392446 I
e proCoq1.NW_012150019v1       92460 1115 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=193352.000000
s hg38.chr6_KI270758v1_alt     21653 14 +     76752 TGAAGGAAATTTTC
s panTro5.chr6             142721418 14 - 175400573 TGAAGGAAATTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873017 14 - 173848474 TGAAGGAAATTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390778 14 +   2807050 TGAAGGAAATTTTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683703 14 - 122973662 TGAAGGAAATTTTC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307759 14 - 172585720 TGAAGGAAATTTTC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468074 14 + 170955103 TGAAGGAAATTTTC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184300 14 +    407600 GGAAGGAAATTTTC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56674 14 +    463628 TGAAGGAAATTTTC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634864 14 +  71996105 TGAAGGAAATTTTC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56302 14 -    115496 TGAAGGAAATTTTC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685438 14 -   1936607 TGAAGGAAATTTTC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628074 14 - 171630274 TGAAGGAAATGTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            184988 14 +   1154217 GGAAGGAAATTTTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011031 14 +  15232693 TGAAGGAAATTTTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253941 14 +    446445 TGAAGGAAATTTTC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4440955 14 + 123392446 TGAAGGAAATTTTC
i micMur3.chr6             I 93 C 0
s otoGar3.GL873550          15318327 13 -  18854210 TGAAAAAAA-ATTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70368540 14 -  72498081 TGAAGGAAAttttt
i canFam3.chr12            C 0 I 199
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       92460 1115 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=70072.000000
s hg38.chr6_KI270758v1_alt     21667  8 +     76752 --AC-----AAAAAA
s panTro5.chr6             142721432  8 - 175400573 --AC-----AAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873031  8 - 173848474 --AC-----AAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390792  8 +   2807050 --AC-----AAAAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683717  8 - 122973662 --AC-----AAAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307773  8 - 172585720 --AC-----AAAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468088  8 + 170955103 --AC-----AAAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184314  8 +    407600 --AC-----AAAAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56688  8 +    463628 --AC-----AAAAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634878  8 +  71996105 --AC-----AAAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56316  8 -    115496 --AC-----AAAAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685452  8 -   1936607 --AC-----AAAAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628088 10 - 171630274 --ACAC---AAGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            185002 12 +   1154217 --ACAC-CAAAAAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011045 10 +  15232693 --ACAA---AAAAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253955 13 +    446445 --ACACACAAAAAAA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4440969  8 + 123392446 --AC-----AAAAAA
i micMur3.chr6             C 0 I 285
s otoGar3.GL873550          15318340  8 -  18854210 --AC-----AAAAAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70368753  8 -  72498081 ATAC-----AAAA--
i canFam3.chr12            I 199 C 0
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       92460 1115 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=1615862.000000
s hg38.chr6_KI270758v1_alt     21675 148 +     76752 ATAGAAGTCATGAGAAGAAGGTGGCTCTTGTTCACACTAAGTATAGCATGGGTCAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAATAAAATAGAAGAGAATATAAGTGGCTAAATGGCATCT------AAAAAATAAACCATTCCAAGA
s panTro5.chr6             142721440 148 - 175400573 ATAGAAGTCATGAGAAGAAGGTGGCTCTTGTTCACACTAAGTATAGCATGGGTCAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAATAAAATAGAAGAGAATATAAGTGGCTAAATGGCATCT------AAAAAATAAACCATTCCAAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873039 148 - 173848474 ATAGAAGTCATGAGAAGAAGGTGGCTCTTGTTCACACTAAGTATAGCATGGGTCAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAATAAAATAGAAGAGAATATAAGTGGCTAAATGGCATCT------AAAAAATAAACCATTCCAAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390800 148 +   2807050 ACAGAAGTCATGAGAAGAAGGTGGCTCTTGTTCACACTAAGTATAGCATGGGTCAGGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAATAAAATAGAAGAGAATATAAGTGGCTAAATGGCATCT------AAAAAATAAACCATTCCAAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683725 147 - 122973662 ATAGAAGTCATAAGAAGAAGGTGGCTC-TGTTCACACTAAGTATAGCATGGGTCAGGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAATAAAATAGAAGAGAATATAAGTGGCTAAATGGCATCT------AAAAAATAAACCATTCCAAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307781 154 - 172585720 ATAGAAGTCATGAGAAGAAAGTAGCTCTTGTTCACCCTGAGCATATCATGGGTCAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTTACAATAAAATGGAAGAGAATATGAGTGGCTAAATGGCACCTAAAAAAAAAAAAAAAACCATCCCAAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468096 151 + 170955103 ATAGAAGTCATGAGAAGAAAGTAGCTCTTGTTCACCCTGAGCATATCATGGGTCAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAATAAAATAGAAGAGAATATGAGTGGCTAAATGGCACCT---AAAAAAAAAAAAACCATCCCAAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184322 149 +    407600 ATAGAAGTCATGAGAAGAAGGTAGCTCTTGTTCACCCTGAGTATAGCATGGGTCAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAATAAAATAGAAGAGAATATGAGTGGCTAAATGGCACCT-----AAAAAAAAAAACCATCCCAAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56696 150 +    463628 ATAGAAGTCATGAGAAGAAGGTAGCTCTTGTTCACCCTGAGTATAGCATGGGTCAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAATAAAATGGAAGAGAATATGAGTGGCTAAATGGCACCT----AAAAAAAAAAACCCATCCCAAGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39634886 153 +  71996105 ATAGAAGTCATGAGAAGAAGGTAGCTCTTGTCCACCCTGAGTATATCATGGGTCAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTTACAATAAAATGGAAGAGAATATGAGTGGCTAAATGGCACCT-AAAAAAAAAAAAAAACCATCCCAAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56324 149 -    115496 ATAGAAGTCATGAGAAGAAGGTAGCTCTTGTTCACCCTGAGTATAGCATGGGTCAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAATAAAATGGAAGAGAATATGAGTGGCTAAATGGCACCT-----AAAAAAAAAACCCATCCCAAGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685460 148 -   1936607 ATAGAAGTCATGAGAAGAAGGTAGCTCTTGTTCACCCTGAGTATAGCATGGGTCAAGCACAGAATGTAAGAGTGGA-ATT-----AGTTCTCACAATAAAATAGAAGAGAATATGAGTGGCTAAATGGCACCT------AAAAAAAAAACCATCCCAAGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628098 148 - 171630274 ATAGAAGCTATGAGAAGAAGGTGGCTCTTGTTCACACTAAGTATAGCATGGGTGAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAATAAAATAGGAGAGAATATGAGTGGCTAAATGGCATCT------AAAAAATAGACCATCCCAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            185014 148 +   1154217 ATAGAAATCATGAGAAGAAGGTGGCTCTTGTTCACACTAAGTATAGCATGGGTGAAGCACAGAATGTAAGAGGGGA-ATT-----CATTCTCACAGTAAAATAGGAGAGAATATGAGTGGCTAAATGGCATCT------AAAAAATAGACCATCTCTAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011055 140 +  15232693 GTAGAAGTCATGAGAAGAAGGTGA--CTTGTTCACACAAAGTATAGCATGGGCAAAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAGTAAAATAGGAGAGAATATGAGTGGCTAAATGGCATCT------AAAAAATAGACCATC------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      253968 148 +    446445 ATAGAAGTCATGAGAAGAAGGTGGCTCTTGTTCACACTAAGTACAGCATGGGTGCAGCACAGAATGTAAGAGGGGA-ATT-----AGTTCTCACAGTAAAATAGGAGAGAATATGAGTGGCTAAATGGCATCT------AAAAAATAGACCATCCCAAGA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15318348 143 -  18854210 ---ACATTCATGTGGAGAAGGTGGGTCTTGTTTGCATTGTGTATAGCAGGAGTCAGGCATAGAGTGTAAGAGGGAA-ATTGGTTAAGTTGTTACCATTTGAGAGGGGAGAATGGGAGTGGATAAATGGCATCT------AAAGAATA-------CAGAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70368761 147 -  72498081 ATAGATGTCATGCGAAGGAGGTGGCTTCTGTTTGCGCTGAATGTGCCACGGGTCCAGCATGGAGAACAATGGGAAATGTT-----AGTGAACATAATAGGATGGGAGAG--CTAGAGTGGATGAATGGCATCT------CAAGAACATATCATTTTAAGA
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440977 285 + 123392446 I
e proCoq1.NW_012150019v1       92460 1115 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=1502019.000000
s hg38.chr6_KI270758v1_alt     21823 142 +     76752 CTTAAGCTAATAcagatggtctctgactt---ataatttggcttatgattgttcaactttatgatgggtttattggtgtattaaatgcattttcagcttaagatattttcaagttataatgggtttattgggacataaccctatt
s panTro5.chr6             142721588 142 - 175400573 CTTAAGCTAATAcagatggtctctgactt---ataatttggcttatgattgttcaactttatgatgggtttattggtgtattaaatgcattttcagcttaagatattttcaagttataatgggtttattgggacataaccctatt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873187 142 - 173848474 CTTAAGCTAATAcagatggtctctgactt---ataatttggcttatgattgttcaactttatgatgggtttattggtgtattaaatgcattttcagcttaagatattttcaagttataatgggtttactgggacataaccctatt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2390948 142 +   2807050 CTTAAGCTAATAcagatggtctctgactt---ataatttggctcatgattgttcaactttatgatgggtttattggtgtattaaatgcattttcagcttaagatattttcaagttataatgggtttattgggacataaccctatt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45683872 142 - 122973662 CTTAAGCTAATAcagatggtctctgactt---ataatttggcttatgattgttcaactttatgatgggtttattggtgtattaaatgcattttcagcttaagatattttcaagttataatgggtttattgggacataaccctatt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139307935 145 - 172585720 CTTAAGCTAATAcagatcatctctgacttacgataatttggcttatgattgttcaactttatggtgggtttattggtgtattaaatgcatttttagcttaagatattttcaagttataatgggtttattgggacataaccctatt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468247 145 + 170955103 CTTAAGCTAATAcagatggtctctgacttacgataatttggcttatgattgttcaactttatggtgggtttattggcgtattaaatgcatttttagcttaagatattttcaagttataatgggtttattgggacataaccctatt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184471 145 +    407600 CTTAAGCTAATAcagatggtctctgacttacgataatttggcttatgattgttcaactttatgatgggtttattagtgtattaaatgcattttcagcttaagatattttcaagttataatgggtttattgggacataaccctatt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56846 145 +    463628 CTTCAGCTAATAcagatggtctctgatttacgataatttggcttgtgattgttcaactttatggtgggtttattggtgtattaaatgcatttttagcttaagatattttcaggttataatgggtttattgggacataaccctatt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635039 145 +  71996105 CTTAAGCTAATAcagatgatctctgacttatgataatttggcttatgattgttcaactttatggtgggtttattggtgtattaaatgcatttttagcttaagatattttcaagttataatgggtttattgggacataaccctatt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56473 145 -    115496 CTTCAGCTAATAcagatggtctctgatttacgataatttggcttgtgattgttcaactttatggtgggtttattggtgtattaaatgcatttttagcttaagatattttcaggttataatgggtttattgggacataaccctatt
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685608 145 -   1936607 CTTAAGCTAATAcagatggtctccgatttacgatcatttggcttatgattgttcaactttatgatgggtttattggtgtattaaatgcattttcagcttaagatattttcaagttataatgggtttattgggacataaccctatt
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628246 145 - 171630274 CTTAGGCTAATAcagatggtctctgacttatgataatttggcttatgatcattcagctttatgatgggtttattggtgtattaaatgcattttccgtttaagatgttttcgacttctgacaggtttattgggacacaaccctatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            185162 145 +   1154217 CTTAGGCTAATAcagatggtctctgacttatgataatttggcttatgattgttcaactttatgatgggtttattggtgtatcaaatgcactttccacttaagatgttttcaacttatgacaggtttattgggacataatcctatt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011195 134 +  15232693 -----------Acagatggtctctgacttatgataatttggcttatgattgttcagctttatgatgggtttactggtgtactaaatgcattttccgcttaagatgttttcaacttatgacaggtttattgggacataaccctatt
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      254116 145 +    446445 CTTAGGCTAATAcagatggtctctgacttatgataatttggcttatggttgttcaacttgacaatgAGTTTATTggtgtattaaatgcattttccgcttaagatgttttcaacttatgacaggtctattgggacataaccctatt
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15318491 123 -  18854210 ---GAACTACTAAGGAAGGTCCCTGACTT---------------TCGGTGGTTCAACTTTATgatgggtttatt-gcataataaatgcatttgtagctt---atatttttgacttacggggggtttatcaggacataacccaatc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440977 285 + 123392446 I
e proCoq1.NW_012150019v1       92460 1115 +   1371726 I
e canFam3.chr12             70368908   0 -  72498081 C
e dasNov3.JH569424            474426 1485 +    935526 I

a score=124340.000000
s hg38.chr6_KI270758v1_alt     21965 12 +     76752 gttaagttggag
s panTro5.chr6             142721730 12 - 175400573 gttaagttggag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873329 12 - 173848474 gttaagttggag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391090 12 +   2807050 gttaagttgaag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684014 12 - 122973662 gttaagtcgaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308080 12 - 172585720 gttaagttgaag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468392 12 + 170955103 gttaagttgaag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184616 12 +    407600 gttaagttgaag
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       56991 12 +    463628 gttaagtagaag
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635184 12 +  71996105 gttaagttgaag
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56618 12 -    115496 gttaagtagaag
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685753 12 -   1936607 gttaagttgaag
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628391 12 - 171630274 gttaagctgagg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            185307 12 +   1154217 gttaagttgagg
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011329 12 +  15232693 gttaagttgagg
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      254261 12 +    446445 gttaagttgagg
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15318614 11 -  18854210 a-taagtggagg
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70368908 12 -  72498081 GTTAAATAGGGT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4440977 285 + 123392446 I
e proCoq1.NW_012150019v1       92460 1115 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=662950.000000
s hg38.chr6_KI270758v1_alt     21977 60 +     76752 agcatctgTACACGAG---------CAGTGGTCCATGCTGCAAAATGTTTTTTAAAAACCAATAGTGA-G
s panTro5.chr6             142721742 60 - 175400573 agcatctgTACACGAG---------CAGTGGTCCATGCTGCAAAATGTTTTTTAAAAACCAATAGTGA-G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873341 59 - 173848474 agcatctgTACACGAG---------CAGTGGTCCATGCTGCAAAAT-TTTTTTAAAAACCAATAGTGA-G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391102 60 +   2807050 agcatctgTACACGAG---------CAGTTGTCCACGCTGCAAAATGTTTTTTAAAAACCAGTAGTGA-G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684026 60 - 122973662 agcctctgTACACGAG---------CAGTGGTCCATGCTGCAAAATGTTTTTTAAAAACCAATAGTGA-G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308092 60 - 172585720 agcatctgTACACGAG---------CAGTGGTCCATGCTGCAAAATGTTTTTTAAAAACCAATAGTGA-G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468404 60 + 170955103 agcatctgTACACGAG---------CAGTGGTCCATGCTGCAAAATGTTTTTTAAAAACCAACAGTGA-G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184628 60 +    407600 agcatctgTACAAGAG---------CAGTGGTCCATGCTGCAAAATGTTTTTTAAAAACCAACAGTGA-G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57003 60 +    463628 agcatctgTACACGAG---------CAGTGGTCCATGCTGCAAAATGTTTTTTAAAAACCAATAGTGA-G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635196 69 +  71996105 agcatctgTACACGAGCTCTGTGTACAGTGGTCCATGCTGCAAAATGTTTTTTAAAAACCAATAGTGA-G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56630 60 -    115496 agcatctgTACACGAG---------CAGTGGTCCATGCTGCAAAATGTTTTTTAAAAACCAATAGTGA-G
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685765 60 -   1936607 agcatctgTACACGAG---------CAGTGGTCCATGCTGCAAAATGTTTTTTAAAAACCAATAGTGA-G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628403 58 - 171630274 ggcatctgTACATGAA---------AAGCGGTCCATG-TGCAAAATGT-TTTTAAAAACCAGTAGTGA-G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            185319 59 +   1154217 ggcatctgTACACAAA---------AAGTGGTCCATG-TGCAAAATGTCTTTTAAAAACCAAGAGAGA-G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011341 59 +  15232693 ggcatctgTACACGAA---------AAGTGGTCCGTG-TGCAAAATGTTTTTTAAAAACCAGTAGTGA-A
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      254273 59 +    446445 ggcatctgTATGTGAA---------AAGTGGTCCATG-TGCAAAATGTTTTTAAAAAACCAATAGTGA-G
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4441262 59 + 123392446 agcatctgTACATGAG---------AAGTGCCCAATGCTGCAAAATGTTTTTGAAAAACCAGGTGTTT--
i micMur3.chr6             I 285 C 0
s otoGar3.GL873550          15318625 59 -  18854210 agcatctgTACATGAG---------AAGTAACCAATACTGCAAAATGTTTTT-AAACCTCAGGAGTAAT-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70368920 54 -  72498081 ------AATACATGAG---------AGGTGGTTAATGCTGAATAAGCTTTTAGAAAAACTAAGAGGGA-T
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       92460 1115 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=714363.000000
s hg38.chr6_KI270758v1_alt     22037 50 +     76752 GATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTAGGAACTTTGAA
s panTro5.chr6             142721802 50 - 175400573 GATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTAGGAACTTTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873400 50 - 173848474 GATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTAGGAACTTTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391162 50 +   2807050 GATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTAGGAACTTTGAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684086 50 - 122973662 GATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTAGGAACTTTGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308152 50 - 172585720 AATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTATGAACTTTGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468464 50 + 170955103 GATAGAAAATAAAC--TATTTTAGGTTTCTGAGATTACTTATGAACTTTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184688 50 +    407600 GATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTATGAACTTCGAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57063 50 +    463628 GATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTATGAACTTTGAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635265 50 +  71996105 AATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTATGAATTTTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56690 50 -    115496 GATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTATGAACTTTGAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685825 50 -   1936607 GATAGAGAATAAAC--TATTTTAGGTTTCTGAGATTACTTATGAACTTTGAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628461 49 - 171630274 GATAGAGAATAAAC--TACTTTAGATTTCGGAGATTAC-TATAAACTTTGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            185378 49 +   1154217 GATAGAGAATAAAC--TACTTTAGGTTTCTGAGATTAC-TATGAACTTTGAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011400 49 +  15232693 GATAGAGAATAAAC--TACTTTAGGTTTCTGAGATTAC-TATGAACTTTGAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      254332 49 +    446445 GATAGAGAAAAAAC--TAATTTAGGTTTCTGAGATTAC-TATGAACTTTGAA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4441321 50 + 123392446 GATAGAGAATAACC--TATTTTAGGTTTCTGGGGTTACTTGTGAGCTTTGAA
i micMur3.chr6             C 0 I 294
s proCoq1.NW_012150019v1       93575 49 +   1371726 GATAGAGAATAACC--TATTTTAGGTTTCT-GGGTTACTTTTGAACTTGGAA
i proCoq1.NW_012150019v1   I 1115 I 1
s otoGar3.GL873550          15318684 50 -  18854210 GATAGAGAATAACC--TATGTTAGGTTTCTGGAGTTACTTTTGAACTTTGAA
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70368974 52 -  72498081 GATAGTGAAGAACTTATATTTTGTATTTCTGAGATTACTTTTGAACTTTGAA
i canFam3.chr12            C 0 I 1
e mm10.chr17                34348491 900 +  94987271 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=838101.000000
s hg38.chr6_KI270758v1_alt     22087 69 +     76752 CCTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCAGAAGACTGTTACTGCTTTCACTGAAATTCTTTTT
s panTro5.chr6             142721852 69 - 175400573 CCTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCAGAAGACTGTTACTGCTTTCACTGAAATTCTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873450 69 - 173848474 CCTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCAGAAGACTGTTACTGCTTTCACTGAAATTCTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391212 69 +   2807050 CCTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCAGAAGACTGTTACTGCTTTCACTGAAATTCTTTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684136 69 - 122973662 CCTTT---AAGGTAGAAAGAAAGGCGAGAAATATGCCAGAAGATTGTTACTGTTTTCACTGAAATTCTTTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308202 69 - 172585720 CCTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCGGAAGATTGTTACTGCTTTCACTGAAATTCTCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468514 69 + 170955103 CCTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCAGAAGATTGTTACTGCTTTCACTGAAATTCTCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184738 69 +    407600 CTTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCAGAAGATTCTTACTGCTTTCACTGAAATTCTCTTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57113 69 +    463628 CCTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCAGAAGATTGTTACTGCTTTCACTGAAATTCTCTTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635315 69 +  71996105 CCTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCGGAAGATTGTTACTGCTTTCACTGAAATTCTCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56740 69 -    115496 CCTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCAGAAGATTGTTACTGCTTTCACTGAAATTCTCTTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685875 69 -   1936607 CCTTT---AAGGTAGAAAGAAAGGTGAGAAATATGCCAGAAGATTGTTGCTGCTTTCACTGAAATTCTCTTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628510 68 - 171630274 ACGTT---AAGATGGAAAGAAAGGTGAGAAATATGCTGCAGGATCGTTACTGCTTTCACTGAAATACT-TTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            185427 68 +   1154217 CCTTT---AAGATGGAAAGAAAGATGAGAAATATGCTACAAGATTGTTACTGCTTTCACTGAAATTTT-TTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011449 68 +  15232693 CCTTT---AAGATGGAAAGAAAGGTGAGAAATATGCTACGAGATTGTTACTGCTTTCACTGAAATTCT-TTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      254381 68 +    446445 CCTCT---AAGATGGAAAGAAAGGTGAGAAATATGCTACAGGATTGTTACTGCTTTCACTGAAATTCT-TTT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       93625 71 +   1371726 CTTTTAAAAAGGTGGAAAGAAAGGTGAGAAATATGCTAGAGGGTTGTCTTTGGCTTCACTGAAATTCT-TTT
i proCoq1.NW_012150019v1   I 1 I 84
s otoGar3.GL873550          15318735 67 -  18854210 CTTTC---AAGGTAGAAAGAAAGGTG-GAAATCTGTTGGAGGATTGTCATTGATTTCACGGAAATTCT-TTT
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70369027 61 -  72498081 TTTTT---AAGGTA-AAAGAAAGGAGAGATCCAGGCCAGAGGATTCTTCATGATTTTACTGAAAT-------
i canFam3.chr12            I 1 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4441371 294 + 123392446 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=783393.000000
s hg38.chr6_KI270758v1_alt     22156 84 +     76752 TGGGGTCCAGTTTCTTTTTACCAATTGAAAATACTACTGC-TATGACTATGACACTAAAG------CTTAC--TTATATTTATtagataatag
s panTro5.chr6             142721921 84 - 175400573 TGGGGTCCAGTTTCTTTTTACCAATTGAAAATACTACTGC-TATGACTATGACACTAAAG------CTTAC--TTATATTTATtagataatag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873519 84 - 173848474 TGGGGTCCAGTTTCTTTTTACCAATTGAAAATACTACTGC-TATGACTATGACACTAAAG------CTTAC--TTATATTTGTtagataatag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391281 84 +   2807050 TGGGGTCCAGTTTCTTTTTACCAATTGAAAATACTACTAA-TATGACTATGACACTAAAG------CTTAT--TTATATTTATTAGATGATAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684205 65 - 122973662 TGGGGTCCAGTTTCTTTTTACCAATTGAAAATACTACTAC--ATGACTATGACACTAAAG------CTT--------------------ATAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308271 84 - 172585720 TGGGGTACAGTTTCTTTTTACCAATTAAAAATACTACTAT-TATGACTAAGACACTAAAG------TTTAC--TTATATGTATTAGATAACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468583 84 + 170955103 TGGGGTACAGTTTCTTTTTACCAATTAAAAATACTACTAT-TATGACTAAGACACTAAAG------TTTAC--TTCTATGTATTAGATAATGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184807 84 +    407600 TGGGGTACAGTTTCTTTTTACCAATTAAAAATACTACTAT-TATGACTAAGACACTAAAG------TTTAC--TTctatgtattagataatgg
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57182 84 +    463628 TGGGGTACAGTTTCTTTTTACCAATTAAAAATACTACTAT-TATGACTAAGACACTAAAG------TTTAC--TTAtatgtattagataatag
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635384 84 +  71996105 TGGGGTACAGTTTCTTTTTACCAATTAAAAATACTACTAT-TATGACTAAGACACTAAAG------TTTAT--TTATATGTATTAGATAACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56809 84 -    115496 TGGGGTACAGTTTCTTTTTACCAATTAAAAATACTACTAT-TATGACTAAGACACTAAAG------TTTAC--TTAtatgtattagataatag
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      685944 84 -   1936607 TGGGGTACAGTTTCTTTTTACCAATTAAAAATACTACTAT-TATGACTAAGACACTAAAG------TTTAC--TTATATGTATTAGATAATAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628578 84 - 171630274 GGGGATGCAGTTTCTTTTTACCAATTAAAAATACTACTGC-TCTGACCATCGCATTAAAG------CTTAC--TTATATTTCTTAGATAATTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            185495 84 +   1154217 GAGGATACAGTTTCTTTTTACCAATTAAAAATACTACTAC-TATGACTATCACATTAAAG------CTTAC--TTATGTTTATTAGATAATTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011517 84 +  15232693 GGGGATACAGTTTCTTTTTACCAATTAAAAATACTACTAC-TATGACTATCGCATTAAAG------CTTAC--TTATATTTATTAGATAATTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      254449 82 +    446445 GGGGATAGAGTTTCTTTTTACCAATTAAAAATACTACTAC-TATGACTATCACATTAAAG------CTTAC--TTATATTTATTAGATAAT--
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15318802 86 -  18854210 TGGAACACATTTTC---TCAAAAATTAAAAATACTGCTAA-GACTAATA-GACACATAGGAAACCATGTCA--TTATGTTTATTGAAGAATAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70369088 80 -  72498081 -------AAGTATTTCCTTATTAATTGAAAATACTACTAAAAATAGCTATCATGTTAAAC------CTTACTATTTTATTCACTAGATAATAA
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4441371 294 + 123392446 I
e proCoq1.NW_012150019v1       93696 84 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=830090.000000
s hg38.chr6_KI270758v1_alt     22240 68 +     76752 ttgtatttccatttta-c-ctgagaaaactggg-tttaaagaaatctagtct-------------------------tttggtcaagggcttactt
s panTro5.chr6             142722005 68 - 175400573 ttgtatttccatttta-c-ctgagaaaactggg-tttaaagaaatctagtct-------------------------tttggtcaagggcttactt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873603 68 - 173848474 ttgtatttccatttta-c-ctgagaaaactggg-tttaaagaaatctagtct-------------------------tttggtcaagggcttactt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391365 68 +   2807050 TTGtatttccatttta-c-ctgagaaaactggg-tttaaagaaatctagtct-------------------------tttggtcaagggcttactt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684270 68 - 122973662 TTGTAGTTccatttta-c-ctgagaaaactggg-tttaaagaaatctagtct-------------------------tttggtcaagggcttactt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308355 68 - 172585720 TTGtatttccatttta-c-ctgagaaaactggg-tttaaagaaatctaatct-------------------------tttggtcaagggcttactt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468667 68 + 170955103 TTGTATTTCCATTTTA-C-CTGAGAAAACTGGG-TTTAAAGAAATCTAATCT-------------------------TTTGGTCAAGGGCTTACTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184891 68 +    407600 ttgtatttccatttta-c-ctgagaaaactggg-tttaaagaaatctaatct-------------------------tttggtcaagggcttactt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57266 68 +    463628 ttgtatttccatttta-c-ctgagaaaactggg-tttaaagaaatctaatct-------------------------tttggtcaagggcttactt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635468 68 +  71996105 TTGtatttccatttta-c-ctgagaaaactggg-tttaaagaaatctaatct-------------------------tttggtcaagggcttactt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56893 68 -    115496 ttgtatttccatttta-c-ctgagaaaactggg-tttaaagaaatctaatct-------------------------tttggtcaagggcttactt
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      686028 68 -   1936607 CTGtatttccatttta-c-ctgagaaaactggg-tttaaagaaatctaatct-------------------------tttggtcaagggcttagtt
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628662 68 - 171630274 TTGTGTTTCCATTTTA-C-CTGAGAAACCTGGG-TTTAAAGAAATCTAGTCT-------------------------TTTGGTCAAGGGCTTACTT
i calJac3.chr4             C 0 I 262
s saiBol1.JH378315            185579 68 +   1154217 CTGTATTTCCATTTTA-C-CTGAGAAACCTGGG-TTTAAAGAAATCTAGTCT-------------------------TTTAGTCAAGGGCTTACTT
i saiBol1.JH378315         C 0 I 260
s cebCap1.NW_016107339v1    14011601 68 +  15232693 TTGTATTTCCATTTTA-C-CTGAAAAGCCTGGG-TTTAAAGAAATCTAGTCT-------------------------TTTGGTCAAGGGCTTACTT
i cebCap1.NW_016107339v1   C 0 I 255
s aotNan1.NW_018508875v1      254531 68 +    446445 -TGTATTTCCATTTTA-T-CTGAGAAAGCTGGGTTTTAAAAAAATCTAGTCT-------------------------TTTGGTCAAGGGCTTAGTC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1       93780 70 +   1371726 TTGtatttccattttatc-ctgagaaacctaggttttaaagaagtctgttcc-------------------------tttggtcaaggtctcactt
i proCoq1.NW_012150019v1   I 84 C 0
s otoGar3.GL873550          15318888 55 -  18854210 TTGTATTTCCATTTCATT-CTGAGAAACCTAGATTTTTTAAAAGTCTAGTTT-------------------------TTTT---------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70369168 92 -  72498081 TTTTATTTCCAATTTA-CTCTGAGAAACCTGGGTTCTAAAGAAA---AGTCCCACTTAGGAAGTAAACACAGTGGTATTGAACCCAGGATTTGGTT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4441371 294 + 123392446 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=96571.000000
s hg38.chr6_KI270758v1_alt     22308  8 +     76752 ----agaaagtg
s panTro5.chr6             142722073  8 - 175400573 ----agaaagtg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873671  8 - 173848474 ----agaaagtg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391433  8 +   2807050 ----agaaagtg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684338  8 - 122973662 ----agaaagtg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308423  8 - 172585720 ----agaaagtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468735  8 + 170955103 ----AGAAAGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184959  8 +    407600 ----agaaagtg
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57334  8 +    463628 ----agaaagtg
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635536  8 +  71996105 ----agaaagtg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56961  8 -    115496 ----agaaagtg
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      686096  8 -   1936607 ----agaaagtg
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138628992  8 - 171630274 ----AAAGAGTG
i calJac3.chr4             I 262 C 0
s saiBol1.JH378315            185907  8 +   1154217 ----AGAAAGTG
i saiBol1.JH378315         I 260 C 0
s cebCap1.NW_016107339v1    14011924  8 +  15232693 ----AGAAAGTG
i cebCap1.NW_016107339v1   I 255 C 0
s aotNan1.NW_018508875v1      254599  8 +    446445 ----ACAAAGTG
i aotNan1.NW_018508875v1   C 0 I 276
s proCoq1.NW_012150019v1       93850  8 +   1371726 ----agagagtg
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15318943  7 -  18854210 -----GAGAGTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70369260 12 -  72498081 GGATCCAAAGTA
i canFam3.chr12            C 0 I 5
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4441371 294 + 123392446 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=127337.000000
s hg38.chr6_KI270758v1_alt     22316 12 +     76752 gcaactgtgatt----
s panTro5.chr6             142722081 12 - 175400573 gcaactgtgatt----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873679 12 - 173848474 gcaactgtgatt----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391441 12 +   2807050 gcaactgtgatt----
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684346 12 - 122973662 gcaactgtgatt----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308431 12 - 172585720 gcaattgtggtt----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468743 12 + 170955103 GCAATTGTGGTT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184967 12 +    407600 gcaattgtggtt----
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57342 12 +    463628 gcaattgtggtt----
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635544 12 +  71996105 gcaattgtggtt----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56969 12 -    115496 gcaactgtggtt----
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      686104 12 -   1936607 gcaattgtggtt----
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138629000 12 - 171630274 GCAACTGCGGTT----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            185915 12 +   1154217 GCAACTGTGGTT----
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011932 12 +  15232693 GCAACTGTGGTT----
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      254883 12 +    446445 GCAACTGTGGTT----
i aotNan1.NW_018508875v1   I 276 C 0
s proCoq1.NW_012150019v1       93858 12 +   1371726 ggagctgtggaa----
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15318950 12 -  18854210 GGAACTGTGGCC----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70369277 16 -  72498081 TCCACAGTGATATGTC
i canFam3.chr12            I 5 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4441371 294 + 123392446 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=3187180.000000
s hg38.chr6_KI270758v1_alt     22328 235 +     76752 ttctaa---------------------------------------------atcaagtctctatctctgtagcc---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTAAAACCACTCATACCACAAACATGTCCTTGGGTAGGGATGACGGTTG------------------------G-TT---TTTTCTTGTATACTATG---TTTA-----------TATGTGACTATTTCAAAAG-TTCTCAGGACACA----TATTTTTCCCTTGATT-TTCTAATT-TATAGTATAACTGGGACTAGGTTTCCCTCTTGTGGTCA
s panTro5.chr6             142722093 235 - 175400573 ttctaa---------------------------------------------atcaagtctctatctctgtagcc---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTAAAACCACTCATACCACAAACATATCCTTGGGTAGGGATGACGGTTG------------------------G-TT---TTTTCTTGTATACTATG---TTTA-----------TATGTGACTATTTCGAAAG-TTCTCAGGACACA----TCTTTTTCCCTTGATT-TTCTAATG-TGTAGTATAACTGGGACTAGGTTTCCCTCTTGTGGTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873691 235 - 173848474 ttctaa---------------------------------------------atcaagtctctatctctgtagcc---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTAAAACCACTCATACCACAAACATATCCTTGGGTAGGGATGACGGTTG------------------------G-TT---TTTTCTTGTATACTATG---TTTA-----------TATGTGACTATTTCGAAAG-TTCTCAGGACACA----TCTTTTTCCCTTGATT-TTCTAATG-TGTAGTATAACTGGGACTAGGTTTCCCTCTTGTGGTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391453 236 +   2807050 ttctaa---------------------------------------------atcaagtctCTAGCTGTGTAGCC---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTAAAACCACTCATACCACAAACATATCCTTGGGTAAGGATGACGGTGG------------------------G-TT---TTTTCTTGTGTACTATG---TTTA-----------TATGTGACTATTTCAAAGG-TTCTCAGGACACA----TCTTTTTCCCTTGATT-TTCTAAGGTTATAGTATAGCTGGGACTAGGTTTCCCTCTTGTGGTCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684358 234 - 122973662 ttctaa---------------------------------------------atcaagtctctagttctgtagccAATAATAATATGTGGAGTCCAAGAACCAGCCCACTCAAAACACTAAAACCACTCA---AACAGACATATCCTTGGGTAGGGATGACGGTTG------------------------G-TT---TTTTCTTGTACACTATG---TTTA-----------TATGTGACTATTTCAAAGG-TTCTCAGGACACA----TCTTTTTCCCTT-ATT-TTCTAATG-TATAGTATAACTGGAACTAGGTTTCCCTCTTGTGGTCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308443 235 - 172585720 ttctaa---------------------------------------------atcaagtctctagctctgtagcc---AATAATATATGGAGTCCAAGAAGCAGTCCACTCAAAACACTGAAACCACTCAAACCACAAACATATCCTTGGGTAGGGATGACAGTTG------------------------G-TT---TTTTCTTGTATACTATG---TTTA-----------TATTTGACTATTTCAAAGG-TTCTCAGGACACA----TCTTTTTCCCTTGATT-TTCTAAGG-TGTAGTATAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468755 235 + 170955103 TTCTAA---------------------------------------------ATCAAGTCTCTAGCTCTGTAGCC---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTGAAACCACTCAAACCACAAACATATCCTTGGGTAGGGATGACAGTTG------------------------G-TT---TTTTCTTGTATACTATG---TTTA-----------TATCTGACTATTTCAAAGG-TTCTCAGGACACA----TCTTTTTCCCTTGATT-TTCTAAGG-TATAGTATAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      184979 235 +    407600 ttctaa---------------------------------------------atcaagtctctagctctgtagcc---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTGAAACCACTCAAACCACAAACATATCCTTGGGTAGGGATGACAGTTG------------------------G-TT---TTTTCTTGTATACTATG---TTTA-----------TATCTGACTATTTCAAAGG-TTCTCAGGACACA----TCTTTTTCCCTTGATT-TTCTAAGG-TATAGTATAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57354 235 +    463628 ttctaa---------------------------------------------atcaagtctctagctctgtagcc---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTGAAACCACTGAAACCACAAACATATCCTTGGGTAGGGATGACAGGTG------------------------G-TT---TTTTCTTGTATACTATG---TTTA-----------TATCTGACTATTTCAAAGG-TTCTCAGGACACA----TCTTTTTCCCTTGATT-TTCTAAGG-TATAGTATAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635556 235 +  71996105 ttctaa---------------------------------------------atcaagtctctagctctgtagcT---AATAATATGTGGAGTCCAAGAACCAATCCACTCAAAACACTAAAACCACTCAAACCACAAACATATCCTTGGGTAGGGATGACAGTTG------------------------G-TT---TTTTCTTGCATACTATG---TTTA-----------TATCTGACTATTTCAAAGG-TTCTCAGGACACA----TCTTTTTCCCTTGATT-TTCTAAAG-TATAGCATAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       56981 235 -    115496 ttctaa---------------------------------------------atcaagtctctagctctgtagcc---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTAAAACCACTGAAACCACAAACATATCCTTGGGTAGGGATGACAGGTG------------------------G-TT---TTTTCTTGTATACTACG---TTTA-----------TATCTGACTATTTCAAAGG-TTCTCAGGACACA----TCTTTTTCCCTTGATT-TTCTAAGG-TATAGTGTAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      686116 235 -   1936607 ttctaa---------------------------------------------atcaagtctctagctctgtagcc---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTAAAACCACTCAAACCACAAACATATCCTTGGGTAGGGATGACAGTTG------------------------G-TT---TTTTCTTGTATACTATG---TTTA-----------TATTTGACTATTTCAAAGG-TTCTCTGGACACA----TCTTTTTCCCTTGATT-TTCTAAGG-TATAGTGTAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138629012 236 - 171630274 TTCTAA---------------------------------------------ATCAAGTCTCTAACCCTGTAGCC---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTAAAACCACTCTAACCACAAACACATCCTTGGGTAGGGATGACAGTTG------------------------G-AT---TTTTCTTGTATGCCATG---TTTG-----------TATGTGACCATTTCAAAAG-TTCTCAGAATACA----TCTTTTTCCCCTGATTGTTCTAATG-TATAGTATAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            185927 262 +   1154217 TTCTAA---------------------------------------------ATCAAGTCTCTAACCCTGTAGCC---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTAAAACCACTCTAACCACAAACACATCCTTGGATAGGGATGACAGttgttgttttttgttttgttttgttttg-ttttgttttCTTGTATACTATG---TTTA-----------TATGTGACTATTTCAAAAG-TTCTCAGGATCCA----TCTTTTTCCCCTGATT-TTCTAATG-TATGGTATAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14011944 236 +  15232693 TTCTAA---------------------------------------------ATCAAGTCTCTAATCCTGTAGCC---AATAATATGTGGAGTCCAAGAACCAGTCCACTCAAAACATTAGAACCACTCTAACCACAAACACAGCCTTGGATAGGGATGACACTTG------------------------G-TTT--TTTTCTCGTATACTATG---TTTA-----------TATGTGACTATTTCAAACG-TTCTCAGGATACA----TCTTTTTCCCCTGATT-TTCTAATG-TATAGTATAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      254895 235 +    446445 TTCTAA---------------------------------------------ATCAAGTCTCTAACCCTGTAGCC---AATAACATGTGGAGTCCAAGAACCAGTCCACTCAAAACACTGAAACCACTCTAACCACAAACACATCCTTGGATAGGGATGACAGTGG------------------------T-TT---TTTTCTTGTATACTATG---TTTA-----------TATGTGACTATTTCAAAAG-TTCTCAGGATACA----TCTTTTTCCCCTGATT-TTCTCATG-TATAGTATAAGTGGGACTAGGTTTCCCTCTTGTGGTCA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4441665 228 + 123392446 TTCTAA---------------------------------------------ATCAAGTCTCTAACTCTGTAGTC---AGCAATATGTGGAATCCAAAAACCTGTCCACTCAAAACACTAAAACCAGTCCAACCACAAACACAGTCATGGGTGGGGATGGTGGTTG------------------------T-GT---TTTTCTTGTACACTATG---TTAA-----------TAGGTGACTATTTCAAAGA-TTCTCAGGAAACA----ACTTTTCCC--TAATT-TTCTAACT------TAGAAGTGGGACTAGTCTTCCCTCTTGTGGTCA
i micMur3.chr6             I 294 C 0
s proCoq1.NW_012150019v1       93870 228 +   1371726 ttctag---------------------------------------------atcaagtctctaactctgtagcc---AGCAATATGTGGAATCCAAAAACCTGTCCGCTCAAAACACTAAAACCACTCCAACCACAAACATAGCCATGGGTGGGGATGGCAGTTG------------------------C-CT---TTTTCTTGTACAGTATG---TTGG-----------TAGGTGACTATGTCAAAGA-TTTTCAGGAAATA----GCTTTCCCC--TGATT-TTCTAACT------TATAAGTGGGACTAGGCTTCCCTCTTGTGGTCA
i proCoq1.NW_012150019v1   C 0 I 6018
s otoGar3.GL873550          15318962 235 -  18854210 TTCTGA---------------------------------------------ATTA-----CTAGCTCTGTAACC---AGTAATATGTAGAATCTAAAAACCAGTCCACTCAAAACACTAAGACTACT-CAGCAACAAACATAGCCATGGGTGGGGATGACAGCTG------------------------CTTT---TTTTCTTGTACACTAAGACATTAGGCACATAGGTTTAGGTGACTATTTGAAAGA-TTCTCAGAAAACA----TCCTTTCCC----AGT-TTCTAACT------TGTAAGTGAGACTAGGCTACCCTCTTGTGGTCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70369293 283 -  72498081 TCCTAAAAATGGATTAATTAAAGATAAAAATTAAATGTGCAAAAAAAATATATCAAGTCTCTAATTGTGTAGCC---AGTAACATGTGGAG-CCAAGAACAAGTGTATTCAAAATACTAAAGCCACTTCAACCACCAATGCAGTCTCGAAAGGGGATGACTATTG--------------------------TT---TTCTCCTGTACACTGTA---CTTA-----------CGGATGAATATTTTAAAAGTTTCTCAGGAAAAAAGTTTCTCTTTCCCCCGCTT-TTCTAATC-CCTGGTAAAAATGGTACAAGGCTTCCCTCTTGTGGTCA
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=1641472.000000
s hg38.chr6_KI270758v1_alt     22563 149 +     76752 ACAGTGTTTAATTCTTCATAAGTGTTTTTGACA-TTGAGT-ATTCAGA-CACCTTATGAAAGATCAAGGATTTCTTAAGTCAGGATGC-TTCAACTAATTTT-TTTCTTATGTGCATACTCAAA---------GTGTGTTTGATTTAATTAGGTCACTTAAAT
s panTro5.chr6             142722328 149 - 175400573 ACAGTGTTTAATTCTTCATAAGTGTTTTTGACA-TTGAGT-ATTCAGA-CACCTTATGAAAGATCAAGGATTTCTTAAGTCAGGATGC-TTCAACTAATTTT-TTTCTTATGTGCGTACTCAAA---------GTGTGTTTGATTTAATTAGGTCGCTTAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140873926 149 - 173848474 ACAGTGTTTAATTCTTCATAAGTGTTTTTGACA-TTGAGT-ATTCAGA-CACCTTATGAAAGATCAAGGATTTCTTAAGTCAGGATGC-TTCAACTAATTTT-TTTCTTATGTGCGTACTCAAA---------GTGTGTTTGATTTAATTAGGTCGCTTAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391689 146 +   2807050 ACGGTGTTTAATTCTTCATAAGTGTTTTTGACA-TTGAGT-GTTCAGA-CACCTTATGAAAGATCAAGGAT---TTAAGTCAGGATGC-TTCAACTAATTTT-TTTCTTATGTGCATATTCAAA---------GTGTGTTTGATTTAATTAGGTCGCTTAAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684592 149 - 122973662 ACAGTGTGTAACTCTTCATAAGTGTTTTTGACA-TTGAGT-ATTCAGA-CACCTTATGAAAGATCAAGGATTTCTTAAGTCAGGATGC-GTCAACTAATTTT-TTTCTTATGTGCACACTCAAA---------GTGTGTTTGATTTAATTAGGTCGCTTAAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308678 149 - 172585720 ACAGTGTTTAATTCTTCATAAGTGTTTTTGACA-TTGAGT-ATTCAGA-CACCTTAGGAAAGATCAAGGATTTCTTAAGTCAGGATGC-TTCAACTAATTTT-TTTCTTATGTGCGTACTCAAA---------GTGTGCTTGATTTAATTAGGTCACTTAAAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138468990 149 + 170955103 ACAGTGTTTAATTCTTCATAAGTGTTTTTGACA-TTGAGT-ATTCAGA-CACCTTAGGAAAGATCAAGGATTTCTTAAGTCAGGATGC-TTCAACTAATTTT-TTTCTTACGTGCGTACTCAAA---------GTGTGCTTGATTTAATTAGGTCACTTAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      185214 149 +    407600 ACAGTGTTTAATTCTTCATAAGTGTTTTTAACA-TTGAGT-ATTCAGA-CACCTTACGAATGATCAAGGATTTCTTAAGTCAGGATGC-TTCAACTAATTTT-TTTCTTACGTGCGTACTCAAA---------GTGTGCTTGATTTAATTAGGTCACTTAAAC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57589 149 +    463628 ACAGTGTTTAATTCTTCATAAGTGTTTTTGACA-TTGAGT-ATTCAGA-TACCTTAGGAAAGATCAAGGATTTCTTAAGTCAGGATGC-TTCAACTAATTTT-TTTCTTATGTGCGTACTCAAA---------GTGTGCTTGATTTAATTAGGTCACTTAAAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635791 149 +  71996105 ACAGTGTTTAATTCTTCATAAGTATTTTTGACA-TTGAGT-ATTCAGA-CACCTTAGGAAAGATCAAGGATTTCTTAAGTCAGGATGC-TTCAACTAATTTT-TTTCTTATGTGCGTACTCAAA---------GTGTGCTTGATTTAATTAGGTCACTTAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       57216 149 -    115496 ACAGTGTTTAATTCTTCATAAGTGTGTTTGACA-TTGAGT-ATTCAGA-CACCTTAGGAAAGATCAAGGATTTCTTAAGTCAGGATGC-TTCAACTAATTTT-TTTCTTATGTGCGTACTCAAA---------GTGTGCTTGATTTAATTAGGTCACTTAAAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      686351 148 -   1936607 ACAGTGTTTAATTCTTCATAAGTGTGTTTGACA-TTGAGT-ATTCAGA-CACCTTAGGAA-GATCAAGGATTTCTTAAGTCAAGATGC-TTCAACTAATTTT-TTTCTTATGTGTGTACTCAAA---------GTGTGCTTGATTTAATTAGGTCACTTAAAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138629248 134 - 171630274 ACAGTGCTTAATTCTTCGTAAGTATTTTTGGCA-TTGAGTAATTCAGA-CAC--TATGAGAGATCAAGGATTTTCTACGTCAGAA---------------TT-TTTCTTATGTGCATACTCCAA---------ACATTTTTTATTTAATTAGGTCGCTTAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            186189 136 +   1154217 GTAGTGTTTAATTCTTCATAAGTATTTTTGACT-TTGAGTAATTCAGA-CACTTTATGGAAGATCAAGGATTTCTGAAGTCAGAA---------------TT-TTTCTTATGTGCATATTCCAA---------GTGTGTTTGATTTAATTAGGTTGCTTAAAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14012180 136 +  15232693 ACAGTGTTTAATTCTTCATAAGTATTTTTGACA-TTGAGTAATTCAGA-CACTTTATGAAAGATCAAGGATTTCTGAAGTCAGGA---------------TT-TTTCTTACATGCATATTCCAA---------GTGTGTTTGATTTAATTAGGTCACTTAAAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      255130 136 +    446445 ACAGTGTTTAATTCTTCATAAGTCTTTTTGACA-TTGAATAATTCAGA-CACTTTATGAAAGATCAAGGATTTCAGAAGTCAGAA---------------TT-TTTCTTATGTGCATATTCCAA---------GTGTGTTTGATTTAATTAGGTCACTTAAAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4441893 161 + 123392446 GTAATGCTAAAGTCTTCATAAATGTTTTTGACATTTGAGT-TTTCAGATTACCTTATGAAAGGTTAAATATTTCTTAATTCAGGATGC-TTTAACTACTTTTGTTCCTTATGTACATACTCAAAAATTCCCAGGTGTGTTTGATCTAATTAGCTTGCTTAAAT
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550          15319197 158 -  18854210 GT-GTATTTATTTCTACATAAATGTTTTTGACGTTTGACT-TTTCAGA-TACCTTCTGAAAGGTCAGGTATTGTTTAATTCAGGATGCTTTTAACTAATTTTGTTCCTTATGTACATACTCAAAACTTCTCAGGTGTGTTTGATCTCATTAGCTTGCTTTA--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70369576 134 -  72498081 ATAGCATGTAATTCTTCATAAATG---TTGGCA-TTGAGT-ATTCAGG-CAGTTTTTGAAAGGTCAAAGATTT--------GGGATGC-TT----TAGTTTA-TTCCTCATGTACACTTCCCGA---------GTGTGTTTAATCTAATTAGATTGCTTAAAT
i canFam3.chr12            C 0 I 6508
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=125095.000000
s hg38.chr6_KI270758v1_alt     22712 17 +     76752 GGTTTGTAATTTTATTT
s panTro5.chr6             142722477 17 - 175400573 GGTTTGTAATTttattt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140874075 17 - 173848474 GGTTTGTAATTTTATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391835 17 +   2807050 GGTTTGTAATTTTATTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684741 17 - 122973662 GGTTTGTAATTTTATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308827 13 - 172585720 AGTTTGTAATTTT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138469139 13 + 170955103 GGTTTGTAATTTT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      185363 13 +    407600 GGTTTGTAATTTT----
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57738 13 +    463628 GGTTTGTAATTTT----
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635940 13 +  71996105 GGTTTGTAATTTT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       57365 13 -    115496 GGTTTGTAATTTT----
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      686499 13 -   1936607 GGTTTGTAATTTT----
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138629382 13 - 171630274 CGTTTGTGATTTT----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            186325 13 +   1154217 GGTTTGTGATTTT----
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14012316 13 +  15232693 GGTTTGTGATTTT----
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      255266 13 +    446445 GGGTTGTGATTTT----
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4442054 13 + 123392446 GGTTTATAGTTTT----
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550          15319355 10 -  18854210 ---TTGTAATGTT----
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e canFam3.chr12             70369710 6508 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=993690.000000
s hg38.chr6_KI270758v1_alt     22729 127 +     76752 ATAAAATTACTTATAAAATATTTAAAACT----TATAAAAATATTTAAAGTCTTTTTA---TAA---GTATTACCATGCCTTTTT--TGAATAAGCACACAAAATATAGGATGTACTTCTTTTAAATAATTTGAAGGTT
s panTro5.chr6             142722494 125 - 175400573 ataaaattatttataaaatatttaAAACT----TATAAAAATATTT--AGTCTTTTTG---TAA---GTATTACCATGCCTTTTT--TGAATAAGCACGCAAAAGATAGGATGTACTTCTTTTAAATAATTTGAAGGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140874092 125 - 173848474 ATAAAATTACTTATAAAATATTTAAAACT----TATAAAAATATTT--AGTCTTTTTG---TAA---GTATTACCATGCCTTTTT--TGAATAAGCACGCAAAAGATAGGATGTACTTCTTTTAAATAATTTGAAGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391852 127 +   2807050 ATAAAGTTACTTATAAAATATTTAAAACT----TATAAAAATATTTAAAGTCTTTTTA---TAA---GTATTACCGTGCCTTTTT--TGAATAAGCACACAAAATATAGGATGTACTTCTTTTAAATAATTTGAAGTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684758 125 - 122973662 ATAAAATTACTTATAAAATATTTAAAAC------ATAAAAATATTTAAAGTCTTTTTG---TAA---GTATTACCATGCCTTTTT--TGAATAAGCACACAAAATACAGGATGTACTTCTTTTAAATAATCTGAAGGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308840  91 - 172585720 -------------------------------------AAAATATTTAAAGTCTTTTTA---TAA---GTATTACCATGCCATTTT--TGAATAAGCACACGAAATATAGGATATA---CTTTTAAATAATTTGAAGGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138469152  91 + 170955103 -------------------------------------AAAATATTTAAAGTCTTTTTA---TAA---GTATTACCATGCCATTTT--TGAATAAGCACACGAAATATAGGATATA---CTTTTAAATAATTTGAAGGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      185376  91 +    407600 -------------------------------------AAAATATTTAAAGTCTTTTTA---TAA---GTATTACCATGCCATTTT--TGAATAAGCACACGAAATATAGGATATA---CTTTTAAATAATTTGAAGGTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57751  91 +    463628 -------------------------------------AAAATATTTAAAGTCTTTTTG---TAA---GTATTACCATGCCATTTT--TTAATAAGCACACGAAATATAGGATATA---CTTTTAAATAATTTGAAGGTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39635953  91 +  71996105 -------------------------------------AAAATATTTAAAGTATTTTTG---TAA---GTATTACCATGCCATTTT--TGAATAAGCACATGAAATATAGGATATA---CTTTTAAATAATTTGAAGGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       57378  91 -    115496 -------------------------------------AAAATATTTAAAGTCTTTTTA---TAA---GTATTACCATGCCATTTT--TTAATAAGCACACGAAATATAGGATATA---CTTTTAAATAATTTGAAGGTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      686512  91 -   1936607 -------------------------------------AAAATATTTAAACTCTTTTTA---TAA---GTATTACCATGCCATTTT--TGAATAAGCACACGAAATATAGGATATA---CTTTTAAATAATTTGAAGGTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138629395  93 - 171630274 -------------------------------------AAAATATTTAACGACTTTTT----TAA---CCATCACCATGCCTTTTT--TGAATAAGCAAACAAAACACAGAATGTACTTATTTTAAATAATTTGCAGGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            186338  94 +   1154217 -------------------------------------TAAATACTTAAAGTCTTTTTA---TAA---CCATTACCATGCCTTTTT--GGAATAAGCACACAAAACACAGAATGTACTTCTTTTAAATAATTTGAAGATT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14012329  94 +  15232693 -------------------------------------TAAATACTTAAAGTCTTTTTA---TAA---CCATCACCATGCTTTTTT--TGAATAAGCACACAAAACACAGAATGTACTTCTTTAAAATAATTTGAAGATT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      255279  94 +    446445 -------------------------------------TAAATATTTGAAGTCTTTTTA---TAA---CCATCACCATGCCTTTTT--TGAATAAGCACACAAAACACAGAATGTACTTTTTTTAAATAATTTGAAGATT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4442067  93 + 123392446 -------------------------------------AAAATGTTTAAAGTCTTTTTA---TAC----TACCACCACGCTTTTTT--TGAATAAGCACACAAAATATAAAATGTATTTATTTTAAATAATTTGAAAATT
i micMur3.chr6             C 0 C 0
s otoGar3.GL873550          15319365  97 -  18854210 -------------------------------------GAAATGTTTCAAGTCTTTTTA---TACTAAGTATCACCATGTCTTTTT--TGAATAAACACACAAAATATAGTATGTAGTTATTAAAAATAATTTAGAAATT
i otoGar3.GL873550         C 0 I 278
s canFam3.chr12             70376218 136 -  72498081 ataaatttattaaaaataaaaataaaaataaaaaataaaaacatttaaaatCTGTTTATACTAA---TTTTTACCATGTCTTTTTAAAAAATAAGCATACAAAATATGGAATGTGCTTCTTTTAAATAATTTGAAAAAT
i canFam3.chr12            I 6508 C 0
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=5462519.000000
s hg38.chr6_KI270758v1_alt     22856 457 +     76752 GAAATAAT-GTCTTAAA-ACGGACAAAATTAACTGTATTTCA-TTTTGAATCTtgtggataa------atgctttataacaccctttctacttctccatgatgtatttaatcttaggctaattttctagctgttttctggaaacctgatggaggaagaatgtcagctggatttttagacaacattgctt------atggcacaaatggcttctggttggcattttg----------tatctttactgggaagaatatttcatgaaccgtaacaaatgacggggacccatagtttgggtatttccaaatgcagtgacccttgtaactgagcatgcc----ctttacagggactctggaagctgtgcccatgggtttgttataagaggtactagctcgtagatgacatgaggattctaagctagggtggacacaacttccacaggtgtaaattcagctccttgtacctgagttgtcacttgggggatg
s panTro5.chr6             142722619 457 - 175400573 GAAATAAT-CTCTTAAA-ATGGACAAAATTAACTGTATTTCA-TTTTGAATCTtgtggataa------atgctttataacaccctttctacttctccatgatgtatttaatcttaggctaattttctagctgttttctggaaacctgatggaggaagaatgtcagctggatttttagacaacattgctt------atggcacaaatggcttctggttggcattttg----------tatctttactgggaagaatatttcatgaaccgtaacaaatgatggggacccatagtttgggtatttccaaatgcagtgacccttgtaactgagcatgcc----ctttacagggactctggaagctgtgcccatgggtttgttataagaggtactagctcgtagatgacatgaggattctaagctagggtggacacaacttccacaggtgtaaattcagctccttgtacctgagttgtcacttgggggatg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140874217 457 - 173848474 GAAATAAT-CTCTTAAA-ATGGACAAAATTAACTGTATTTCA-TTTTGAATCTtgtggataa------atgctttataacaccctttctacttctccatgatgtatttaatcttaggctaattttctagctgttttctggaaacctgatggaggaagaatgtcagctggatttttagacaacattgctt------atggcacaaatggcttctggttggcattttg----------tatctttactgggaagaatatttcatgaaccgtaacaaatgatggggacccatagtttgggtatttccaaatgcagtgacccttgtaactgagcatgcc----ctttacagggactctggaagctgtgcccatgggtttgttataagaggtactagctcgtagatgacatgaggattctaagctagggtggacacaacttccacaggtgtaaattcagctccttgtacctgagttgtcacttgggggatg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2391979 457 +   2807050 GAAATAAT-CTCTTAAA-ACGGACAAAATTAACTGTATTTCA-TTTTGAATCTtgtggataa------atgctttataacatcctttctacttctccatgatatatttaatcttaggctaattttctagctgttttctggaaacctgatggaggaagaacgtcagctggatttttagacaacattgctt------gtggcacaaaaggcttctggttggcattttg----------tatctttactgggaagaatatttcatgaaccataacaaatgatggggacccatagtttgggtatttccgaacgcagtgacccttgtaactgagcatgcc----ctttacagggactctggaagctgtgcccatgggtttgttataagaggtactagctcgtagatggcatgaggattctaagctagggtggacacaacttccacaggtgtaaattcagctccttgtacctgagttgtcacttgggggatg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45684883 457 - 122973662 GAAATAAT-CTCTTAAA-ATGGACAAAATTAACTGTATTTCA-TTTTGAATCTtgtggataa------atgctttataacatgctttctacttctccatgatatatttaatcttaggctaattttctagctgttttctggaaacctgatggaggaagaatgtcagctggatttttagacaacactgctt------gtggcacaaatggcttctggttggcattttg----------tatctttactgggaagaatatttaatgaaccataacaaatgacggggacccatagtttgggtatttccaaacacagtgacccttgtaactgagcatgcc----ctttacagggactctggaagctgtgcccatgggtttgttataagaggtactagctcgtagatggcatgaggattctaagctaggttggacaccacttccacaggtgtaaattcagctccttgtacctgagttgtcacttgggggatg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139308931 457 - 172585720 GAAATAAT-CTCTTTAA-ACGGACAAAATTAACTCTATTTCA-TTTTGAATCTtgtggataa------atgctttataacattctttctacttctccatgatatgtttaatcttacgctaattttctagttgttttctggaaacctgatggaggaagaacatcagctggatttttagacaacattgctt------gtggcacaaatggctgctggttggcgttttg----------tatctttaccaggaagaatattcgatgaaccataacaaatgacggggacccatagtttgggtatctctgaacgcaatgacccttgtaactaagcatgcc----ctttacagggactctgcaagctgtgcccttcagtttgttataagaggtagtagctcctagagggcatggggattctaagccggggtggacacaacttccacaggtgtaaattcagctccttgtacctgagctgtcacttgggggata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138469243 457 + 170955103 GAAATAAT-CTCTTTAA-ACGGACAAAATTAACTCCATTTCA-TTTTGAATCTtgtggataa------atgccttataacattctttctacttctccatgatatgtttaatcttacgctaattttctagttgttttctggaaacctgatggaggaagaacatcagctggatttttagacaacattgctt------gtggcacaaatggctgctggttggcgttttg----------tatctttaccaggaagaatattcgatgaaccataacaaatgacggggacccatagtttgggtatctctgaacgcaatgacccttgtaactaagcatgcc----ctttacagggactctgcaagctgtgcccttcagtttgttataagaggtagtagctcctagagggcatggggattctaagccggggtggacacaacttccacaggtgtaaattcagctccttgtacctgagctgtcacttgggggata
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      185467 457 +    407600 GAAATAAT-CTCTTAAA-ACGGACAAAATTAACTCTATTTCA-TTTTGAATCTtgtggataa------atgctttataacattctttctacttctccacgatatgtttaatcttacgctaattttctagttgttttctggaaacctgatggaggaagaacatcagctggatttttagacaacattgctt------gtggcacaaatggcttctgattggcgttttg----------tatctttaccgggaagaatattcgatgaaccataacaaatgacggggacccatagtttgggtatctctgaaagcaatgacccttgtaactaagcatgcc----ctttacagggactctgcaagctgtgcccttcagtttgttataagaggtagtagctcctagagggcatggggattctaagccggggtggacacaacttccacaggtgtaaattcagctccttgtacctgagctgtcacttgggggata
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       57842 457 +    463628 GAAATAAT-CTCTTAAA-ACGGACAAAATTAACTCCATTTCA-TTTTGAATCTtgtagataa------atgctttataacatcctttctacttctccatgatatgtttaatcttacgctgattttctagttgttttctggaaacctgatggaggaagaatatcagctggatttttagacaacattgctt------gtggcacaaatggcttctgattggcgttttg----------tatctttaccgggaagaatattcgatgaaccataacaaatgacggggacccatagtttgggtatctctgaacgcaatgaccgttgtaactaagcatgcc----ctttacagggactctgcaagctgtgcccttcagtttgttataagaggcagtagctcctagagggcatggggattctaagccggggtggacacaacttccacaggtgtaaattcagctccttgtacctgggctgtcacttgggggatg
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39636044 457 +  71996105 GAAATAAT-CTCTTAAA-ATGGACAAAATTAACTCTATTTCA-TTTTGAATCTtgtggataa------atgctttataacatcctttctacttctccatgatatgtttcatcttacgctaattttctagttgttttctggaaacctgatggaggaagaacatcagctggatctttagacaacattgctt------gtggcacaaatggcttctggttggcgttttg----------taactttaccgggaagaatatttgatgaaccataacaaatgacggggacccatagtttgggtatctctgaatgcaacgacccttataactgagcatgcc----ctttacagggactctgcaagctgtgcccttgggtttgttataagacgtagtagctcctagatggcatggggattctaagccagggtggacatgacttccacaggtgtaaattcagctccttgtacctgagctatcacttgggggatg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       57469 457 -    115496 GAAATAAT-CTCTTTAA-ACGGATAAAATTAACTCCATTTCA-TTTTGAATCTtgtggataa------atgctttataacatcctttctacttctccatgatatgtttaatcttacgctaattttctagttgttttctggaaacctgatggaggaagaatatcagctggatttttagacaacattgctt------gtggcacaaatggcttctggttggcgttttg----------tatctttaccgggaagaatattctatgaaccataacaaatgacggggacccatagtttgggtatctctgaacgcaatgacccttgtaactaagcatgcc----ctttacagggactctgcaagctgtgcccttgggtttgttataagaggtagtagctcctagatggcatggggattctaagctggggtggacacaacttccacaggtgtaaattcagctccttgtgcctgagctgtcacttgagggatg
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      686603 457 -   1936607 GAAATAAT-CTCTTAAA-ATGGACAAAATTAACTCTATTTCA-TTTTGAATCTtgtggataa------atgctttataacatcctttctacttctccatgatatgtttaatcttacgctaattttctagttgttttctggaaacctgaaggaggaagaacatcagctggctttttagacaacactgctt------gtggcacaaatggcttctggttggcgttttg----------tatctttaccgggaagaatatttgacgaaccataacaaatgacggggacccatagtttgggtatctctgaacgcaatgacccttgtaactaagcatgcc----ctttacagggactctgcaagctgtgcccttgggtttgtcataagaggtaatagctgctagatggcatggggattctaagccagggtggacacaacttccacaggtgtaaattcagctccttgtacctgagctgtcacttgggggatg
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138629488 458 - 171630274 GAAATAAT-CTCTTAAATAGAGATAAAATTAACTGTATTTCA-TTTTGAACCTtgtgcatga------atgctttatagcaacctttatacttttccatgacaagtttaatcttaggctaattttccagctcttttctggaaacccgatgaaggaaaaatgtcagctggatttttagacaacgttgctt------gtggtataaatggcttctggttggcattttg----------tatctttactgggaagaatatttgatgaatcataataaatggcggagacccatagtttgggtatctctgaacacactaacccttgtaactgagcacacc----ctttacagggacgttggaagctatgcccacgggtttgttataaaaggtactagctcctagatggcatgaggattcaaagccagggtggtcaccacttccactggtgtaaattcagctccttgttcctaagttgtcacttgggggatg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            186432 457 +   1154217 GAAATAAT-CTCTTAAA-ATGGATAAAATTAACTCTATTTCA-TTTTGAATCTtgtgcataa------atgctttataacgtcctttctacttctccatgacaaatttaatcttaggctaattttctagcttttttctggaaacctgatgaaggaaaaatgtcagctggatttttagacaatgttgctt------gtggtataaatggcttctggttggcattttg----------tatctttgccaggaagaatatttgatgaatcataacaaatggcagagacccatagtttgggtatctctgaatgcactaacccttgtaactgagcacacc----ctttacaggtactgtggaagctaggcccacgggtttgttataaaaggtgcgagctcctaggtggcatgagggttctaagccagggtggacaccacttccatgggtgtaaattcagctccttgttcctaagttgtcacttagcagatg
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14012423 456 +  15232693 GAAATAAT-CTCTTAAA-ATGGATAAAATTTACTCTATTTCA-TTTTGAATCTtgtgcataa------atgctttataacatcctttctacttctccatgacaaatttaatcttaggctaattttctagcttttttctggaaacctgatgaaggaaaaatgtcagctggatttttagacagtgttgctt------gtggtataaatggc-tctgattggcatttta----------tatctttactgggaagaatatttgatgaatcataacaaatggtggtgacccatagtctgggtatctctgaacgcactaacccttgtaactgagcacgcc----ctttacagggactctggaagctatgcccacgggtttgttataaaaggtgctggctcctagatggcatgagggttctaagccagggtggacaccacttccatgggtgtaaattcagccccttgttcctaagctgtcacttgggggatg
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      255373 457 +    446445 GAAATAAT-CTCTTAAA-ATGGATAAAATTAACTCTGTTTCA-TGTTGAATCTtgtgcgtaa------atgctttataacatcctttctacttctccatgacaaatttaatcttaggctaattttctagctcttttctggaaacccaatgaaggaaaaatgtcagctggatttttagacaacgttgctt------gtggtataaatggcttctggttggcaatttg----------tatctttaccaggaagaatatttgatgaatcataacaaatggcggagacccatagtttgggtatctctgaatgcactaacccttgtaactgaacacgcc----ctttacagggactctggaagctatgcccgcgggtttgttataaaaggtactagctcctagatggcatgaggattctaagccaggatggacaccacttccatgggtgtaaattcagctcctagttcctaagttgtcatttgggggatg
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4442160 447 + 123392446 GAGATAATCTTTTTAAA-ATGGAAAAAACTAACTCCATATCA-TTTTGACTCTtgtggataa------atacttaataccaccctttctagttctccatgacaaattgaatcttaggctaattttccagctgtttccccaaaacctgaaaaagaaagaatggcagatggatttctaggcaacattgctggtataaatggtataaatggcctctcattggcaatttg----------tatt----ttgggaagaacattggatgagctacgacaaacggtgggaatccacagtttgagcacctctgaatgcactgacctttgtacctgagcatgca----c-ttgcaggggctctggaagctgtgcccgtggatttgttacaagaggtactggctcctgtgtggcatgaggattcta------------ctccacttccacaggtgtatgttcagctccttgcacctaagttgtcacttgggggatg
i micMur3.chr6             C 0 I 35761
s otoGar3.GL873550          15319740 429 -  18854210 GAAATAAT-TTTTCAAA-ATGGAAAAAATTAACT--ATACCATTTTTTACTCTTGTAGATAATTATTCATACttaataatatcctttctacttctctatggctaaattcatcttaggctaattttcttgctgtctcccaaaaatctgtaaaagaaacgatgtcagctggatttccagataacattgctgtggtaaaaagaaacaatggcctttgattagcaattggctgggaagaatatt--gagtgggaaggatattggataaactataacacttggtgggaacccatagtgtgagtatatcttaatgcactgacccttgacactgattatttc----c-ttacagagattctggaagctttgcccatggacttcttataagaggtactggttcctctgtgtcatgaggattcta----------------------------------------------agccaagttggcATTTGGGAGATG
i otoGar3.GL873550         I 278 I 1
s canFam3.chr12             70376354 417 -  72498081 GAAATGAT-GTCT-AAA-AAAGAAAAAGTTAACTGTAAATCA-CATTGATTCTTGTGGGTAT------ATG--TTAAAA----------Acttctccatgacaaatttaatctcaggctagttttgtagctattttctggaaatctgataaagaatgaatgtcagctgaatttatagacaaacttgcct------atgg----------------------tcttg----------c-------ctgggaggaaaatgtggttaattatagcaaatggtgggagctcacaatttgagcatcactgaatgcagagacccttgt-attgggcatgccatgtccttgcagggggactgaaagttatgtccatggaggtgttattagaagtactggctccaaggcag-atgaagatgctcagccagggcagactccactctcataggtgtaaattcgtctccttgcacctaaactgtaacttcggggtgg
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=1361640.000000
s hg38.chr6_KI270758v1_alt     23313 122 +     76752 --ggggcagaggatgaaactagcacctggaataaattatagactgtttcaagaacttctcccactgaagaaaaagacctgattcag-ca-ctttggcatactttgactcctgtctaatatccttct
s panTro5.chr6             142723076 122 - 175400573 --ggggcagaggatgaaactagcacctggaataaattatggactgtttcaagaacttctcccactgaagaaaatgacctgattcag-ca-ctttggcgtactttgactcctgtctaatatccttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140874674 122 - 173848474 --ggggcagaggatgaaactagcacctggaataaattatggactgtttcaagaacttctcccactgaagaaaatgacctgattcag-ca-ctttggcgtactttgactcctgtctaatatccttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2392436 122 +   2807050 --ggggcagaggatgaaactagcacctggaataaattatggactgtttcaagaacttctcccactgaagaaaatgacctgattcag-ca-ctttggcgtactttgactcctgtctaatatccttct
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685340 122 - 122973662 --ggggcagaggatgaaactagcacctggaataaattatggactgtttcaagaacttctcccactgaagaaaaagacttgattcag-ca-ctttggcgtgctttgactcctgtctaatatccttct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309388 122 - 172585720 --ggggcagaggatgaaacaagcacctggaatgagttatagactgtttcaagaacttctcccactgaagaaaaaaacctgattcag-ca-ctttggcatactttaacttctgcctaatatccttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138469700 122 + 170955103 --ggggcagaggatgaaacaagcacctggaatgagttatagactgtttcaagaacttctcccactgaagaaaaaaacctgattcag-ca-ctttggcatactttaacttctgcctaatatccttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      185924 122 +    407600 --ggggcagaggatgaaacaagcacctggaatgagttatagactgtttcaagaacttctcccactgaagaaaaaaacctgattcag-ca-ctttggcatactttaacttctgcctaatatccttct
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       58299 122 +    463628 --gggacagaggatgaaactagcacctggaataagttatagactgtttcaagaacttctcccactgaagaaaaaaacctgattcag-ca-cttcggcatactttaacttctgtctaatatccttct
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39636501 122 +  71996105 --ggggcagaggatgaaactagcacctggaataagttatagactgtttcaagaacttctcccactgaagaaaaaaacctgattcag-ca-ctttggcatactttgacttctgtctaatgtccttct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       57926 121 -    115496 --ggggcagaggatgaaactagcacctggaataagttatagactgtttcaagaacttctcccactgaag-aaaaaacctgattcag-ca-ctttggcatactttgacttctgtctaatatccttct
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      687060 122 -   1936607 --ggggcagaggatgaaactagcacctggaataagttatagactgtttcaagaacttctcccactgaagaaaaaaacctgattcag-ca-ctttggcatactttgacttctgtctaatatcctttt
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138629946 118 - 171630274 --ggggcccaggatgaaactagcacctggaatacattatgtactgtttcaagaacttctcccactgaataaaaagacctaattcag-ca-ctttgg----ctttgactcctgtctaatgtccttct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            186889 118 +   1154217 --ggggcagaagatgaaactaacacctggaataaattatgtactgtttcaagaacttctcccactgaagaaaaagacctaattcag-ca-ctttag----ctttgactcctgtctaatatccttct
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14012879 118 +  15232693 --ggagcagaggatgaaactagcacctggaatatattatgtactgtttcaagaacttctcccactgaagaaaaagacctaattcag-ca-ctttgg----ctttgactcctgtctaatacccttct
i cebCap1.NW_016107339v1   C 0 I 90
s aotNan1.NW_018508875v1      255830 118 +    446445 --ggggcagaggataaaactagcacctggaataaattatgtactgtttcaagaacttctcccactgaagaaaaagacctaattcag-ca-cttggg----ctttgactcctgtctaatatccttct
i aotNan1.NW_018508875v1   C 0 I 90
s otoGar3.GL873550          15320170 117 -  18854210 --GGTG----GGAAGAAATCAG-ACCTGGACTAAATTATGGACTGTTTCAA-AACTTctcccactgaaaggaaatactcaatgcag-agcccttggcatgctttgctgcctgtctgatatccttct
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70376771 114 -  72498081 gttgggcagag------actagcacctggactgtattatggactttttcaataaatt-tcccactgaagagaaacatctgatgctgtcc-ccttagcatgctttgattcctgtc----attctact
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=15279.000000
s hg38.chr6_KI270758v1_alt     23435 2 +     76752 aa
s panTro5.chr6             142723198 2 - 175400573 aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140874796 2 - 173848474 aa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2392558 2 +   2807050 aa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685462 2 - 122973662 aa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309510 2 - 172585720 aa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138469822 2 + 170955103 aa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      186046 2 +    407600 aa
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       58421 2 +    463628 aa
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39636623 2 +  71996105 aa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       58047 2 -    115496 aa
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      687182 2 -   1936607 aa
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138630064 2 - 171630274 gG
i calJac3.chr4             C 0 I 87
s saiBol1.JH378315            187007 2 +   1154217 ga
i saiBol1.JH378315         C 0 I 88
s otoGar3.GL873550          15320287 2 -  18854210 aa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70376885 2 -  72498081 ga
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14012997 90 +  15232693 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e aotNan1.NW_018508875v1      255948 90 +    446445 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=1794746.000000
s hg38.chr6_KI270758v1_alt     23437 184 +     76752 gtgaatctgagagccaggtgtggcctatggtaaaaacttgaatatgagtatttagttaaacctgagaatactccctgCCCCCGGGTATTGATACATCGGCAATTTTCATTTTATGTC-TTTTTTT-----A-TGTGTATATGTCATATGGTAT---------ATGTGTATACATAGGAGAT--------------------------acacacacaca----cacgcaca
s panTro5.chr6             142723200 190 - 175400573 gtgaatctgagagccaggtgtggcctatggtaaaaactttaatatgagtatttagttaaacctgagaatactccctgTCCCCGGGTATTGATATATCGGCAATTTTCATTTTATGTC-TTTTTTT-----A-TGTGTATATGTCACATGGTAT---------ATGTGTATACATAGGAGATA--------------------Tacacacacacacaca----cacgcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140874798 187 - 173848474 gtgaatctgagagccaggtgtggcctatggtaaaaactttaatatgagtatttagttaaacctgagaatactccctgTCCCCGGGTATTGATATATCGGCAATTTTCATTTTATGTC-TTTTTTT-----ATTGTGTATATGTCACATGGTAT---------ATGTGTATACATAGGAGAT------------------------acacacacacaca----cacgcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2392560 186 +   2807050 gtgaatctgagagccaggtgtggcctatggtaaaaactttaatatgagtatttagttaaacctgagaatactccctgCCCCCGGGTATTGATATATCGGCAATTTTCATTTTATGTC-TTTTTTT-----A-TGTGTATATGTCACATGGTAT---------ATGTGTATACATAGGAGAT------------------------acacacacacaca----cacgcaca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685464 187 - 122973662 gtgaatctgagagccaggtgtggcctatggtaaaaacttgaatatgagtatttagttaaacctgagaatactccctgCCCCCGGGTATTGATACATCGACAATTTTCATTTTATGTC-TTTTTTT--TACA-TGTGTATATGTCACATGGTAT---------ATGTGTACACATAGGAGAT--------------------------acacacacaca----cacacaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309512 184 - 172585720 gtgaatctgagggccaggtgtggcctatggtaaaaacttgaatatgagtatttagttaaacctgagaatactccctgCGCCCAGGTATTGATACACGGACAATTTTCATTTTATGTC--TTTTTT--TACA-TGTGTATATGTCACATGGTAT---------ATGTGTATACATAGGAGAT----------------------------ACATACACA----CACACACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138469824 180 + 170955103 gtgaatctgagggccaggtgtggcctatggtaaaaacttgaatatgagtatttagttaaacctgagaatactccctgCCCCCAGGTATTGATACACGGACAATTTTCATTTTATGTC-TTTTTTT--TACA-TGTGTATATGTCACATGGTAT---------A-GTGTATACATAGGAG--------------------------------ATACACA----CACACACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      186048 180 +    407600 gtgaatctgagggccaggtgtggcctatggtaaaaacttgaatatgagtatttagttaaacctgagaatactccctgCCCCCAGGTATTGATACACGGACAATTTTCATTTTATGTC-TTTTTTT--TACA-TGTGTATATGTCACATGGTAT---------A-GTGTATACATAGGAG--------------------------------ATACACA----CACACACA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       58423 181 +    463628 gtgagtctgagggccaggtgtggcctatggtaaaaacttgaatatgagtatttagttaaacctgagaatactccctgCCCCCAGGTATTGATACACGGACAATTTTCATTTTATGTC-TTTTTTT--TACA-TGTGTATATGTCACATGGTAT---------ATGTGTATACATAGGAG--------------------------------ATACACA----CACACACA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39636625 185 +  71996105 gtgaatctgagggccaggtgtggcctatggtaaaaacttgaatatgagtatttagttaaacctgagaatactccctgCCCCCAGGTATTGATACACGGACAATTTTCGTTTTATGTC-TTTTTTT--TACA-TGTGTATATGTTACATGGTAT---------ATGTGTATACATACGAGAT----------------------------GCACACACA----CACACACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       58049 186 -    115496 ggtaatctgagggccaggtgtggcctatggtaaaaacttgaatatgagtatttagttaaacctgagaatactccctgCCCCCGGGTATTGATACACGGACAATTTTCATTTTATGTCTTTTTTTT--TACA-TGTGTATATGTCACATGGTAT---------ATGTGTATACATAGGAGAT----------------------------acacacaca----cacacaca
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      687184 184 -   1936607 gtgaatctgagggccaggtgtggcctatggtaaaaacttgaatatgagtatttagttaaacctgagactactccctgCCCCCGGGTATTGATACACGGACAATTTTCATTTtatgtc--tttttt--taca-tgtgtatatgtcacatggcat---------atgtGtatacataggagat----------------------------acacataca----cacacaca
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138630153 185 - 171630274 gtggacctGAGAgccaggtgtggcctgaggtaaaaatttgaatatgagtgtttagtaaaacctaagcatacttcctgCCCCCAGGTATTGATACATGGACAATTTTTATTTGATTTC-TCTTTTT--TACA-TATGTATATGTCACATGGTAT---------ATGTGTACACATGGGAGAT------------------------------ACACACAC--GCACACACA
i calJac3.chr4             I 87 C 0
s saiBol1.JH378315            187097 181 +   1154217 gtgaacctgagagccaggtgtggcctaaggtaaaaatttgagtatgactgtttagttaaacctaagaatacttcctCCTCCCAGGTATTGATATATGGACAATTTTTATTTGATTTC-TCTTTTT--TACA-TGTGTATATGTCACATGGTGT---------ATGTGTACACATGGAAGAT------------------------------ACACA------CACACACA
i saiBol1.JH378315         I 88 C 0
s cebCap1.NW_016107339v1    14013087 177 +  15232693 gTGAACCTGAGAGCCAGGGGTGGCCTGAGGTAAAAATTTGAATATGACTGTTTAGTTAAACCAAAGAATACTTCCTGCCCCCAGGTATTGATATATGGACAATTTTTCTTTGATTTC-TCTTTTT--TACA-TG------TGTCACATGGTAT---------ATGTGTACACATGGGAGAT------------------------------ACACACA----AACACACA
i cebCap1.NW_016107339v1   I 90 C 0
s aotNan1.NW_018508875v1      256038 187 +    446445 gTGAACCTGAGAgccaggtgtggcctgaggtaaaaatttgaatatgactgtttagttaaacctaagaatactccctgCCCCCAGGTATTGATATATGGACAATTTTTATTTGATTTC-TCGTTTT--TACA-TGTGTATATGTCACATGGTAT---------ATGTGTACACATGGGAGAT------------------------------ACACACACATGAGCACGCA
i aotNan1.NW_018508875v1   I 90 C 0
s otoGar3.GL873550          15320289 195 -  18854210 gtgaatctgagagccaaatgtggcctatgataatcatgtgaatctgagtatttaatgaaacctaagaagacatgctg------gGTCTTGAT--ATGGAAAGTTTTCATTTTATTTC-TTTTTTTGGTACA-TATCTATATGTGCAATACTGT---------GTATGTATTCATGGTATATA------------TATACATGTATacacacacacaca----cacacaca
i otoGar3.GL873550         C 0 I 691
s canFam3.chr12             70376887 206 -  72498081 gtgaatctgagagccaagcatagtctaggataataa-tgagatctgaatagtcagtg-----taagaaga-------tcccTGAGTCTTGATA-ATAGATAGTTTTGAGTTTATT---TTTTATA--CACA-TGTGTGTATGTGACATGGCATCCATGGAAAatgtatatatataatatataagttgtgttataaatatatataaatataaataaata----tatatata
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=344258.000000
s hg38.chr6_KI270758v1_alt     23621 43 +     76752 -TTTCCCATA--TTTTGGG--AAAAAATTTGCATA-TTTTTATGGCTTT----
s panTro5.chr6             142723390 44 - 175400573 -cTTCCCATA--TTTTAGG--AAAAAATTTGCATATTTTTTATGGCTTT----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140874985 44 - 173848474 -cTTCCCATA--TTTTAGG--AAAAAATTTGCATATTTTTTATGGCTTT----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2392746 44 +   2807050 -cTTCCCATA--TTTTGGG--AAAAAATTTGCATATTTTTTATGGCTTT----
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685651 43 - 122973662 -TTTCCCATA--TTTTGGG--AAAAAATTTGCATT-TTTTTATGGCTTT----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309696 45 - 172585720 -TTTCCCATA--TTTTGGGGGGAAAAATCTGCAT-TTTTTTATGGCTTT----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138470004 46 + 170955103 -TTTCCCATA--TTTTGGGGAAAAAAATCTGCGTATTTTTTATGGCTTT----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      186228 46 +    407600 -TTTCCCATA--TTTTGGGGAAAAAAATCTGCGTATTTTTTATGGCTTT----
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       58604 45 +    463628 -TTTCCCATA--TTTTGGGG-AAAAAATCTGCATATTTTTTATGGCTTT----
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39636810 46 +  71996105 -TTTCCCATA--TTTTGGGGAAAAAAATCTGCTTTTTTTTTATGGCTTT----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       58235 45 -    115496 -TTTCCCATA--TTTTGGGG-AAAAAATCTGCATATTTTTTATGGCTCT----
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      687368 46 -   1936607 -tTTCCCATA--TTTTGGGGAAAAAAGTCTACGTATTTTTTATGGCTTT----
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138630338 41 - 171630274 -TTTCCCATA--TTTGGGG----AAAATCTGCATA-TTTTTATGGCTTT----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            187278 41 +   1154217 -TTTCCTATA--TTTGGGG----AAAATATGCATA-TTTTTATGGCTTT----
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14013264 40 +  15232693 -TTTCCCATA--TTTGGAG----AAAATCTGCATA-TTTTTAT-GCTTT----
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      256225 41 +    446445 -TTTCCCATA--TTTGGGG----AAAATCTGCATA-TTTTTATAGCTTT----
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70377093 50 -  72498081 ATTTCCTGTGATCTTTTTG--AAAAAATATGCATA-TTTTCATAGTTTGCTAT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e otoGar3.GL873550          15320484 691 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=188961.000000
s hg38.chr6_KI270758v1_alt     23664 23 +     76752 AACATAATTAATA-----------GTTTTAG---TCT-
s panTro5.chr6             142723434 23 - 175400573 AACATAATTAATA-----------GTTTTAG---TCT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140875029 23 - 173848474 AACATAATTAATA-----------GTTTTAG---TCT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2392790 23 +   2807050 AACATAATTAATA-----------GTTTTAG---TCT-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685694 23 - 122973662 AACATAATTAATA-----------GTTTTAG---TCT-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309741 22 - 172585720 AACATAATTAATA-----------GTTTTAG---TC--
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138470050 22 + 170955103 AACATAATTAATA-----------GTTTTAG---TC--
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      186274 22 +    407600 AACATAATTGATA-----------GTTTTAG---TC--
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       58649 22 +    463628 AACATAATTGATA-----------GTTTTAG---TC--
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39636856 22 +  71996105 AACATAATTGATA-----------GTTTTAG---TC--
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       58280 22 -    115496 AACATAATTGATA-----------GTTTTAG---TC--
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      687414 25 -   1936607 AACATAAATAATA-----------GTTTTAGTCTTC--
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138630379 22 - 171630274 AATATAATTAATA-----------GTTTTAG---TC--
i calJac3.chr4             C 0 I 1
s saiBol1.JH378315            187319 21 +   1154217 AATAT-ATTAATA-----------GTTTTAG---TC--
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14013304 22 +  15232693 AATATAATTAATA-----------GTTTTAG---TC--
i cebCap1.NW_016107339v1   C 0 I 1
s aotNan1.NW_018508875v1      256266 22 +    446445 AATATAATGAATA-----------GTTTTAG---TC--
i aotNan1.NW_018508875v1   C 0 I 203
s otoGar3.GL873550          15321175 29 -  18854210 AGCATAATTAATCTCA----TGCTGTTTTAG---TT--
i otoGar3.GL873550         I 691 I 1
s canFam3.chr12             70377143 34 -  72498081 TACATAATTAATCTCACACCTGCTATTTTAT---TT-T
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=215440.000000
s hg38.chr6_KI270758v1_alt     23687 27 +     76752 TGTTTTATTTTTGTTACCAAATTAACT
s panTro5.chr6             142723457 27 - 175400573 TGTTTTATTTTTGTTACCAAATTAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140875052 27 - 173848474 TGTTTTATTTTTGTTACCAAATTAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2392813 27 +   2807050 TGTTTTATTTTTGTTACCAAATTAACT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685717 27 - 122973662 TGTTTTATTTTTGTTACCAGATTTACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309763 25 - 172585720 --TTTTATTTTTGTAAGCAAATTAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138470072 25 + 170955103 --TTTTATTTTTGTAAGCAAATTAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      186296 25 +    407600 --TTTTATTTTTGTAAGCAAATTAACT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       58671 25 +    463628 --TTTTATTTTTGTAAGCAAATTAACT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39636878 25 +  71996105 --TTTTATTTTTGTAAGCAAATTAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       58302 25 -    115496 --TTTTATTTTTGTAAGCAAATTAACT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      687439 25 -   1936607 --TTTTATTTTTGTAAGCAAATTAACT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138630402 20 - 171630274 -------TTTTTGTTACCAAATTAACT
i calJac3.chr4             I 1 C 0
s saiBol1.JH378315            187340 20 +   1154217 -------TTTTTGTTACCAAATTAACT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14013327 20 +  15232693 -------TTTTTGTTACCAAATTAACT
i cebCap1.NW_016107339v1   I 1 I 97
s otoGar3.GL873550          15321205 26 -  18854210 TATTTTA-TTTTGTTAGCAAATTAACT
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70377177 27 -  72498081 AGCTTTATTTTTGTTACTAAACAATTC
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e aotNan1.NW_018508875v1      256288 203 +    446445 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=-15637.000000
s hg38.chr6_KI270758v1_alt     23714  4 +     76752 TA----------AC
s panTro5.chr6             142723484  4 - 175400573 TA----------AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140875079  4 - 173848474 TA----------AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2392840  4 +   2807050 TA----------AC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685744  4 - 122973662 TA----------AC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309788 14 - 172585720 TATGTTAAATACAC
i rheMac8.chr4             C 0 I 6
s macFas5.chr4             138470097 14 + 170955103 TACATTAAATACAC
i macFas5.chr4             C 0 I 6
s macNem1.NW_012013344v1      186321 14 +    407600 TACATTAAATACAC
i macNem1.NW_012013344v1   C 0 I 6
s cerAty1.NW_012003702v1       58696 14 +    463628 TACATTAAATACAC
i cerAty1.NW_012003702v1   C 0 I 6
s chlSab2.chr17             39636903 14 +  71996105 TACATTAAATACAC
i chlSab2.chr17            C 0 I 6
s manLeu1.NW_012101600v1       58327 14 -    115496 TACATTAAATACAC
i manLeu1.NW_012101600v1   C 0 I 6
s colAng1.NW_012115555v1      687464 14 -   1936607 TACATTAAATACAC
i colAng1.NW_012115555v1   C 0 I 6
s calJac3.chr4             138630422  4 - 171630274 ---------CATA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            187360  4 +   1154217 ---------TACA-
i saiBol1.JH378315         C 0 C 0
s otoGar3.GL873550          15321231  4 -  18854210 ---------TGTA-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70377204  4 -  72498081 ------AAAT----
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14013347 97 +  15232693 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e aotNan1.NW_018508875v1      256288 203 +    446445 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=12376.000000
s hg38.chr6_KI270758v1_alt     23718 1 +     76752 T
s panTro5.chr6             142723488 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140875083 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2392844 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685748 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309808 1 - 172585720 T
i rheMac8.chr4             I 6 C 0
s macFas5.chr4             138470117 1 + 170955103 T
i macFas5.chr4             I 6 C 0
s macNem1.NW_012013344v1      186341 1 +    407600 T
i macNem1.NW_012013344v1   I 6 C 0
s cerAty1.NW_012003702v1       58716 1 +    463628 T
i cerAty1.NW_012003702v1   I 6 C 0
s chlSab2.chr17             39636923 1 +  71996105 T
i chlSab2.chr17            I 6 C 0
s manLeu1.NW_012101600v1       58347 1 -    115496 T
i manLeu1.NW_012101600v1   I 6 C 0
s colAng1.NW_012115555v1      687484 1 -   1936607 T
i colAng1.NW_012115555v1   I 6 C 0
s calJac3.chr4             138630426 1 - 171630274 T
i calJac3.chr4             C 0 I 92
s saiBol1.JH378315            187364 1 +   1154217 T
i saiBol1.JH378315         C 0 I 96
s aotNan1.NW_018508875v1      256491 1 +    446445 T
i aotNan1.NW_018508875v1   I 203 C 0
s otoGar3.GL873550          15321235 1 -  18854210 T
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70377208 1 -  72498081 T
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14013347 97 +  15232693 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=1659885.000000
s hg38.chr6_KI270758v1_alt     23719 156 +     76752 CTAAGGATACATTATATGTTTATTTAAGGATCTAAGGATAGAGGTATAATATTTTAATATATG-ACAAAAACAT----ATTTTAaaaaatatggtgagagatttctggttctaagacaagatgaagtaggt-acaattcttcctattcctcctgctaagtac
s panTro5.chr6             142723489 156 - 175400573 CTAAGGATAGATGATATGTTTATTTAAGGATCTAAGGATAGATGTATAATATTTTAATATATG-CCAAAAACAT----ATTTTAaaaaatatggtgagagatttctggttctaagacaagatggagtaggt-acaattcttcctattcctcctgctaagtac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140875084 156 - 173848474 CTAAGGATAGATGATATGTTTATTTAAGGATCTAAGGATAGATGTATAATATTTTAATATATG-CCAAAAACAT----ATTTTAaaaaatatggtgagagatttctggttctaagacaagatggagtaggt-acaattcttcctattcctcctgctaagtac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2392845 156 +   2807050 CTAAGGATAGATGATATGTTTATTTAAGGATCTAAGGATAGATGCATAATATTTTAATATATG-CCAAAAACAT----ATTTTAaaaaatatggtgagagatttctggttctaagacaagatggagtaggt-acaattcttcctattcctcctgctaagtac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685749 149 - 122973662 CTAAGGATAGATGATATG----TTTAAGGATCTAAGGATAGAGGTACAATATTTTAATATATG-CCAAAAACAT----ATTTTTAAAAATATGGTGagagatttctggttccgagacaagatagagtaggt-acaattcttcctcttcctcctt---agtac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309809 156 - 172585720 CTAAGGATAGATGATATGTTTACTTAAGGATCTAAGGATAGATGTACAATATTTTAATATATG-ACAAAGACAT----ATTTttaaaaatatgttgagaaatttctggttccaagacaagatggagtaggt-gcaattcttcctattcctcctactaagtac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138470118 156 + 170955103 CTAAGGATAGCTGATATGTTTATTTAAGGATCTAAGGATAGATGTACAATATTTTAATATATG-CCAAAGACAT----ATTTttaaaaatacgttgagaaatttctggttccaagacaagatggagtaggt-gcaattcttcctattcctcctactaagtac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      186342 156 +    407600 CTAAGGATAGATGATATGTTTATTTAAGGATCTAAGGATAGATGTACAACATTTTAATATATG-CCAAAGACAT----ATTTTTTAAAATATGTTgagaaatttctggttccaagacaagatggagtaggt-gcaattcttcctattcctcctactaagtac
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       58717 156 +    463628 CTAAGGATAGATGATATGTTTATTTAAGGATCTAAGGATAGATGTACAATATTTTAATTTATG-CCAAAGACAT----ATTTTCaaaaatatgttgagaaatttctggttccaagacaagatggtgtaggt-gcaattcttcctattcctcctactaagtac
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39636924 156 +  71996105 CTAAGGATAGATGATATGTTTATTTAAGGATCTAAGGATAGATGTACAATATTTTAATATATG-CCAAAGACAT----ATTTTTTAAAATATGTTgagaaatttctggttccaagacaagatggagtaggt-gcaattcttcctattcctcctactaagtac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       58348 156 -    115496 CTAAGGATAGATGATATGTTTATTTAAGGATCTAAGGATAGATGTACAATATTTTAATTTATG-CCAAAGACAT----ATTTTCaaaaatatgttgagaaatttctggttccaagacaagatggtgtaggt-gcaattcttcctattcctcctactaagtac
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      687485 156 -   1936607 CTAAGGATAGATGATATGTTTATTTAAGGATCTAAGGATAGATGTACAATATTTTAATGTATG-CCAAAGACAT----ATTTttaaaaatatgttgagaaatttctggttccaagacaagatggagtaggt-gcaatttttcctattcctcctactaagtac
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138630519 153 - 171630274 CTAAGGACAGATTATATGTTTATTTAAGAATCTAAGGATAGATGTACAATATTTCAATATATG-CCAAAAAC------ATTTttaaaaatatggtgagagatttctggttc-aggatgagatggagtaggt-gtaattctccctattcctcctgctaagtac
i calJac3.chr4             I 92 C 0
s saiBol1.JH378315            187461 155 +   1154217 CTAAGGACAGATTATATGCTTATTTAAGGATCTAAGGATAGATGTACAATATTTTAATACATG-CCCAAAACAT----ATTTttaaaaatttggtgagagatttctggttc-aggacaagatggagtaggt-gtaattcttcctattcctcctgccaagtac
i saiBol1.JH378315         I 96 C 0
s cebCap1.NW_016107339v1    14013444 153 +  15232693 CTAAGGACAGATTATATGTTTGTTTAAGAATCTAAGGATAGATGTACAATATTTTAATATATG-CCAAAAAC------ATTTttaaaaatacagtgagagatttctggttc-aggacgagatagagtaggt-gtaattcttcctattcctcctgctaagtac
i cebCap1.NW_016107339v1   I 97 C 0
s aotNan1.NW_018508875v1      256492 155 +    446445 CTAAGGATAGGTTATATGTTTATTTAAGGATCTAAGAATAGATGTACAATATTTTAATATATG-CCAAAAACAT----ATTTTttaaaatatggtgagagatttctggttc-aggacaagatggagtaggt-gtaattcttcctattcctcctgccaagtac
i aotNan1.NW_018508875v1   C 0 I 11
s otoGar3.GL873550          15321236 140 -  18854210 -------CAGATAA-------ACATAATTATTTAAGGATAAATGCACAATATTTTGATATATG-TAAGAAACAT----ACTAC-AAATTTTTGgtgagagacttctggtttcaggatgagatggagtagat-gcaattcttccta-tcctcctgttaagtac
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70377209 144 -  72498081 --AAATAAACATATCATAATT--------ATCTAGGTATAAGTGCACAGAATTTTGATCTATGTTTTAAGATATCAAAATTTT-------ATGgtgagggatttttggttttaggacaagatggagtagataacaattcttcccatttttaa-attaagtac
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=59575.000000
s hg38.chr6_KI270758v1_alt     23875 6 +     76752 agctac
s panTro5.chr6             142723645 6 - 175400573 agctac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140875240 6 - 173848474 agctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2393001 6 +   2807050 agctac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685898 6 - 122973662 agctac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309965 6 - 172585720 agctat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138470274 6 + 170955103 agctat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      186498 6 +    407600 agctat
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       58873 6 +    463628 agctat
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39637080 6 +  71996105 agctat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       58504 6 -    115496 agctat
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      687641 6 -   1936607 agctac
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138630672 6 - 171630274 agctcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            187616 6 +   1154217 agctac
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14013597 6 +  15232693 agctac
i cebCap1.NW_016107339v1   C 0 C 0
s otoGar3.GL873550          15321376 6 -  18854210 agctac
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70377353 6 -  72498081 aggtaa
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e aotNan1.NW_018508875v1      256647 11 +    446445 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=2761283.000000
s hg38.chr6_KI270758v1_alt     23881 245 +     76752 agacagacataaaaagcccttgaatgatggagaggagaa-gcaggttggcctcagaccatgggatt-ggggaatgacagagtggtgagtttcataggtcttc--tttctgcctaatatatccaggaatgagtgctggagaaactggaaaacaggaaacatcagtagtcacagacaaaaatatcctaaggaaagcatg-tttctctatc-caagggaacaagaaagagcagcctacc-aggcagataact--gac
s panTro5.chr6             142723651 245 - 175400573 agacagacataaaaagcccttgaatgacgaagaggagaa-gcaggttggcctcagaccatgggatt-ggggaatgacagagtggtgagtttcatgggtcttc--tttctgcctaatatatccaggaatgagtgctggagaaactggaaaacaggaaacatcagtagtcacagacaaaaatatcctaaggaaagcatg-tttctctatc-caagggaaaaagaaagagcagcctacc-aggcagataact--gac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140875246 245 - 173848474 agacagacataaaaagcccttgaatgacgaagaggagaa-gcaggttggcctcagaccatgggatt-ggggaatgacagagtggtgagtttcatgggtcttc--tttctgcctaatatatccaggaatgagtgctggagaaactagaaaacaggaaacatcagtagtcacagacaaaaatatcctaaggaaagcatg-tttctctatc-caagggaacaagaaagagcagcctacc-aggcagataact--gac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2393007 245 +   2807050 agacagacataaaaagcccttgaatgacggagaggagaa-gcaggttggcctcagaccatgggatt-ggggaatgacagagtggtgagtttcatgggtcttc--tttctgcctaatatatccaggaatgagtgctggagaaactggaaaacaggaaacatcagtagtcacagacaaaaatatcctaaggaaagcatg-tttctctatc-caaggcaacaagaaagagcagcctacc-aggcagataact--gac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45685904 245 - 122973662 agacagacataaaaagcccttgaatgacggagaggagaa-gcaggttggcctcagaccatgggatg-ggggaatgacagagtggtgagttccatgggttttc--tttctacctaatatatccaggaatgagtgctggagaaactggaaaacaggaaacatcagtagtcacagacaaaaatatcctaaggaaagcatg-tttccctatc-caagggaacaagaaagagcagcctacc-gggcagataact--gat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139309971 245 - 172585720 agacagacgtaagaagcccttgaatgacagagaggagaa-gcaggttggcctcagaccacgggatt-ggggaatgacggagtggtgagttccatgggttttc--tttctgcctaatatatccaggaatgagtgctggagaaactggaaaacaggaaacatcagtagtcacagacgaaaatatcctaaggaaagcatg-tttctctatc-caacggaatgagaaagagcagcctgcc-aggcagataact--gat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138470280 245 + 170955103 agacagatgtaagaagcccttgaatgacagagaggagaa-gcaggttggcctcagaccacgggatt-ggggaatggcggagtggtgagttccatgggttttc--tttctgcctaatatatccaggaatgagtgctggagaaactggaaaacaggaaacatcagtagtcacagacgaaaatatcctaaggaaagcatg-tttctctatc-caagggaatgagaaagagcaacgtacc-aggcagataact--gat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      186504 245 +    407600 agacagacgtaagaagcccttgaatgacagagaggagaa-gcaggttggcctcagaccacgggatt-ggggaatggcggagtggtgagttccatgggttttc--tttctgcctaatatatccaggaatgagtgctggagaaactggaaaacaggaaacatcagtagtcacagacgaaaatatcctaaggaaagcatg-tttctctatc-caagggaatgagaaagagcaacgtacc-aggcagataact--gat
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       58879 245 +    463628 agacagacgtaagaagcccttgaatgacagagaggagaa-gtaggttggcctcagaccacgggatt-ggggaatgacggagtggtgagttccatgggttttc--tttctgcctaatatatccaggaatgagtgctggagaaactggaaaacaggaaacatcagtagtcacagacaaaaatatcctaaggaaagcatg-tttctctatc-caagggaatgagaaagagcaatctacc-aggcagataacc--gat
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39637086 241 +  71996105 agaca----taagaagcccttgagtgacagagaggagaa-gcaggttggcctcagaccatgggatt-ggggaatgacggagtggtgagttccatgggttttc--tttctgcctaatatatccaggaatgagtgctggagaaactggaaaacagaaaacatcagtagtcacagacgaaaatatcctaaggaaagcatg-tttctctatc-caagggaatgagaaagagcagcctacc-aggcagataacc--gat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       58510 245 -    115496 atacatacgtaagaagcccttgaatgacagagaggagaa-gtagattggcctcagaccacgggatt-ggggaatgacggagtggtgagttccatgggttttc--tttctgtctaatatatccaggaatgagtgctggagaaactggaaaacaggaaatatcagtagtcacagacaaaaatatcctaaggaaagcatg-tttctctatc-caagggaatgagaaagagcaacctacc-aggcagataacc--gat
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      687647 245 -   1936607 agacagacataagaagcccttgaatgacagagaggagaa-gcaggttggcctcagaccacgggatt-ggggaatgacagagtggtgagttccatgggttttc--tttctgcctaatatatccaggaatgagtgctggagaaacgggaaaacaggaaacatcagtagtcacagacaaaaatatcctaaggaaagcatg-tttctctagc-caagggaatgagaaacagcagcctacc-aggcagataact--gac
i colAng1.NW_012115555v1   C 0 I 886
s calJac3.chr4             138630678 248 - 171630274 agacaggtataagaagcctttgaatgatggagaggagaa-gcaggttggcctcagaccatgggact-agggaatgacagagtggtgagttccatgggttttc--tttctgcctaatgtatccaggaatgagtgttggagaaattggaaaacaggacacaccagtaattgtagacaaaaatatcctaagaaaaacatg-tttctctgtc-caaggaaacaagaaagagcagcctaccaaggcagataactctgac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            187622 244 +   1154217 agacagacat---aagcctttgaatgatggagaggaaaa-gcaggttgg-ctcagaccatgggact-ggggaatggcagagtcctgagttccatgggttttc--tttctgcctaatgtatccaggaatgagtgctggagaaattggaaaacaggaaacaccaatagtcgtagacaaaaatatcctaaggaaagcatg-tttctctatc-caagggaacaagaaagagcagcctaccaaggcagataacttcgac
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14013603 248 +  15232693 agacagatataagaagtctttgaatgatggagaggagaa-gcaggttggcctcagaccatgagact-aggaaatgacagagcggtgagttccatgggctttc--tttctgcctaatgtatccaggaatgagtgctggagaaattggaaaacaagacacaccgatagtcgtagacaaaagtatcctaagaaaaacatg-tttctctgtc-caagggaacaagaaagagcagcctaccaaggcagataactttgac
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      256658 245 +    446445 agacagacat---aagcctttgaatgatggagaggaaaa-gcaggttgg-ctcagaccacaggactgggggaatggcagagtcgtgagttccatgggttttc--tttatgcctaatgtatccaggaatgagtgctggaggaactggaaaacaggaaacaccagtagtcatagacaaaaatatcctaaggaaagcatg-tttctctatc-caagggaacaagaaagagcagcctactaaggcagataactttgac
i aotNan1.NW_018508875v1   I 11 C 0
s otoGar3.GL873550          15321382 242 -  18854210 ----aaacatatgaagac--taaatagtggagagaagag-gaaaatt-gcctgagaccttgggatt-gaggaagaatatgccag-gagttctctggatattc-ttttttgccaaatatgttcaggaataggtgctgaagaaactgaaaaacaggaaacaccaacaggcacagacagaaatgtcctgaggaaagtatactttctttatc-caaaggaacaggaaagagcaaaccagcaaggcagaaaaattagac
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70377359 250 -  72498081 agacaagcaaaaggagactctgaaaggtggagaaaagaaggcagattcactccagtccctgggact-gaggaatgacata-tggtgagttccttggattttccttttttgcctaatgtattcaggaagaagtgttggagaaactggaaactaagaaacaccagtaggcacagacaaaaatatcctaaggaaatgatc-tttttctacctcaaaaacacaggaaagggcagcctagcaaggcagaacatgtagg-
i canFam3.chr12            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=4260741.000000
s hg38.chr6_KI270758v1_alt     24126 463 +     76752 agtaaccgcactactccagtcaaa---tacagaaaaatcagggg-------cttccatc-ccgcctcagtcagcaaacactgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggcgataatgagacactacctagacccatcaggcttatgtcagaggaagccaactggggacctaggacttttgcccctgc-ctatcagta--atcagccac-ctccacactgtggtgt-----------------tagtgaagcccatgtgaagagcctggactt-ccacctg-ccctgttgcaaggaagcactc-----ctcacccactttgccaaggtgttgtcagaggaggccaagtagaaagctgggactttcaccactgtccaggtgtaaggaggcacttctcccttcctggtgtcagtagaggccatgtgggagcgctgatgagaccctctccctc--ccagtcaggattctgtaagtggaggcctagtggggagcctgagtttct
s panTro5.chr6             142723896 462 - 175400573 agtaaccgcactactccagtcaaa---tacagaaaaatcagggg-------cttccatc-ccgcctcagtcagcaaacactgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggcgataatgagacactgcctagacccatcgggcttatgtcagaggaagccaaatggggacctaggactttcgcccc-gc-ctatcagta--atcagccac-ctccacactgtggtgt-----------------tagtgaagcccgtgtgaagagcctggactt-ccacctg-ccctgttgcaaggaagcactc-----ctcacccactttgccaaggtgttgtcagaggaggccaagtagaaagctgggactttcaccactgtccaggtgtaaggaggcactcctcccttcctggtgtcagtagaggccatgtgggagcattgatgagaccctctccctc--ccagtcaggattctgtaagtggaggcctactggggagcctgagtttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140875491 462 - 173848474 agtaaccgcactactccagtcaaa---tacagaaaaatcagggg-------cttccatc-ccgcctcagtcagcaaacactgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggcgataatgagacactgcctagacccatcgggcttatgtcagaggaagccaaatggggacctaggactttcgcccc-gc-ctatcagta--atcagccac-ctccacactgtggtgt-----------------tagtgaagcccgtgtgaagagcctggactt-ccacctg-ccctgttgcaaggaagcactc-----ctcacccactttgccaaggtgttgtcagaggaggccaagtagaaagctgggactttcaccactgtccaggtgtaaggaggcactcctcccttcctggtgtcagtagaggccatgtgggagcattgatgagaccctctccctc--ccagtcaggattctgtaagtggaggcctactggggagcctgagtttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2393252 462 +   2807050 agtaaccgcactactccagtcaaa---tacagaaaaatcagggg-------cttccatc-ccacctcagtcagcaaacactgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggcgataatgagacactgcctagacccatcaggcttatgtcagaggaagccaactggggacctaggactttcgcccctgc-ctatcagta--atcagccac-ctccacactgtggtgt-----------------tagtgaagcccgtgtgaagagcctggactt-ccacctg-ccctgttgcaaggaagcactc-----ctcacccactttgccaaggtgttgtcagaggaggccaagtag-aagctgggactttcaccactgtccaggtgtaaggaggcactcctcccttcctggtgtcagtagaggccatgtgggagcactgatgagaccctctccctc--ccagtcaggattctgtaagtggaggcctactggggagcctgagtttct
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45686149 463 - 122973662 agtaacctcactactccagtcaaa---tatagaaaaatcagggg-------ctcccatc-ccgcctcagtcagcaaacgctgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggcgataatgagacactacctagacccatcaggcttatgtcagaggaagccaactggggacctaggactttcactcctgc-ctatcagta--atcagccac-ctccacactgtggtgt-----------------tagtgaagcccatgtgaagagcctggactt-ccacctg-ccctgttgcaaggaagcactc-----ctcacccactttgccagggtgttgtcagaggaggccaagtagaaagctgagactttcaccattgctcaggtgtaaggaggcactcctcccttcctggtgtcagtagaggctacgtgggagcactgatgagaccctctccctc--ccggtcaggattctgtaagtggaggcctagtggggagcctgaatttct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139310216 480 - 172585720 agtaaccgcactactccaatcaaa---tacagaaaaatcagtgg-------ctcccaac-ccgcctcagtcagcaaacgctgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggtgataatgagatacttcctagacccatcaggcttatgtcagaggaagccacctggggatttaggactttcaccactgc-ccatccgta--atcagccac-ctccgcattgtggtgttgcccacattgtgggcatagtgaagcccatgcgaagagcctggactt-ccacctg-ccctgttggaaggaagcactc-----ctcacccactttgccagggtgctgtcagaggaggccaagtagaaagctggggctttcaccactgcccaggtgtaaggaggcactcctaccctcctggggtcagtagaatccacgttggagcaccgataagaccctctccctc--ccagtcaggattctgtaaatggaggcctagtggggagcctgaattcct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138470525 480 + 170955103 agtaaccgcactattccagtcaaa---tacagaaaaatcagtgg-------ctcccaac-ccacctcagtcagcaaacgctgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggcgataatgagatacttcctagacccatcaggcttacgtcagaggaagccacctggggatttaggactttcgccactgc-ccatcagta--atcagccac-ctccacattttggtgttgcccacattgtgggcatagtgaagcccatgcgaagagcctggactt-ccacctg-ccctgttggaaggaagcgctc-----ctcacccactttgccagggtgctgtcagaggatgccaagtagaaagctggggctttcaccactgcccaggtgtaaggaggcactcctaccctcctggggtcagtagaatccacgttggagcaccgataagaccctctccctc--ccagtcaggattctgtaaatggaggcctagtggggagcctgaattcct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      186749 480 +    407600 agtaaccgcactattccagtcaaa---tacagaaaaatcagtgg-------ctcccaac-ccacctcagtcagcaaacgctgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggcgataatgagatacttcctagacccatcaggcttacgtcagaggaagccacctggggatttaggactttcgccactgc-ccatcagta--atcagccac-ctccacattttggtgttgcccacattgtgggcatagtgaagcccatgcgaagagcctggactt-ccacctg-ccctgttggaaggaagcactc-----ctcacccactttgccagggtgctgtcagaggaggccaagtagaaagctggggctttcaccactgcccaggtgtaaggaggcactcctaccctcctggggtcagtagaatccacgttggagcaccgataagaccctctccctc--ccagtcaggattctgtaaatggaggcctagtggggagcctgaattcct
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       59124 480 +    463628 agtaaccgcactactccagtcaaa---tacagaaaaatcagtgg-------ctcccaac-ccgcctcagtcagcaaacgctgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggtgataatgagatacttcctagacccatcaggcttacatcagaggaagccacctggggatttaggactttcaccactgc-ccatcagta--atcagccac-ctccacattttggtgttgcccacattgtgggcatagtgaagcccatgcgaagagcctggactt-ccacctg-ccctgttggaaggaagcactc-----ctcacccaattttccagggtgctgtcagaggaggccaagtagaaagctggggctttcaccactgcccacgtataaggaggcactcctatcctcctggggtcagtagaggccacgttggagcactgataagaccctctccctc--ccagtcaggattctgtaaatggaggcctagtggggagcctgaattcct
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39637327 479 +  71996105 agtaaccgcgctactccagtcaaa---tacagaaaaatcagtgg-------ctcccaac-ccgcctcagtcagcaaacgctgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggtgataatgagatacttcctagacccatcaggcttacatcagaggaagccacctggggatttaggactttcgccactgc-ccatcagta--atcagccac-ctctgcattgtggtgttgcccacattgtgggcatagtgaagcccatgcaaacagcctggactt-ccacttg-ccctgttggaaggaagtgctc------tcacccaatttgccagggtgctgtcagaggaggccaagcagaaagctggggctttcaccactgcccaggtgtaaggaggcacttctcccctcctggggtcagtagaggccatgttggagcactgatgagaccctctccctc--ccagtcaggattctgtaaatggaggcctagtggggagcctgaattcct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       58755 480 -    115496 agtaaccgcactactccagtcaaa---tacagaaaaatcagtgg-------ctcccaac-ccgcctcagtcagcaaacgctgagtgaggagctttgtc---ttatccca--------------------------------ttgcctggtgataatgagatacttcctagacccatcaggcttacatcagaggaagccacctggggatttaggactttcaccactgc-ccatcagta--atcagccac-ctccacattgtggtgttgcccacattgtgggcatagtgaagcccatgcgaacagcctggactt-ccacctg-ccctgttggaaggaagcactc-----ttcacccactttgccagggtgctgtcagaggaagccaagcagaaagctggggctttcaccactgcccaggtgtaaggaggcactcctaccctcctggggttagtagaggccacgttggagcactgatgagaccctctccctc--ccagtcaggattctgtaaatggaggcctagtggggagcctgaattcct
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138630926 461 - 171630274 agtaaccgtgctactccagtcaa-----acagaaaaatcagtgg-------ctcccatc-ccggatcagtcagcaaaggctg-gtgaggagctttgag---ttatccta--------------------------------ttacctggcggtaatgagacaccacctagacccatcaggcttatgtcagaggaaaccaactggggatctaggattttcaccactgc-ctgtcagta--atgagccgc-ctccacactgtggtgt-----------------tagtgaagcccatgcgaagagcctggacttcccacctg-ccccattggaaggaaacactt-----ctcacccactttgccagggtgttgtcagaggaggccaagtagaaatctgagactttcaccactgcccaggtgtaaggaggcactcctcccttcctggtgtcagtagacaccatgtgggagcagttatgagtccctctccctc--ctagtcaggattgtgtaagtggaggcctagtggggagcctgaacttcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            187866 456 +   1154217 agtaactgcactactccagttaa-----acagaaaaatcagtgg-------ctcccatc-ccggatcagtcagcaaagactgagtgaagagctttgac---ttatccca--------------------------------tagcctggcggtaatgaaaca-cacctagacccatcaggcttatgtcagaggaagc---ctgggcatctaggactttcaccactgc-ctatcagta--atgagccgc-ctccacactgtggtgt-----------------tagcgaagcccatgcgaagaccctggactt-ccacctg-ccccattggaaggaagcactc-----ctca-ccattttaccagggtgttgtcagaggaggccaagtagaaacctgagactttcaccactgcccaggtgcaaggaggcactcctcccttcctggtgtcagtagaggccatgtggaagcagtgatgagtccctctccctc--ctagtcaagattgtgtaagtggaagcctagtggggagcctgaatttcc
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14013851 493 +  15232693 aataaccgggctactccagtcaa-----acagaaaaatcagtgg-------ctcctatc-ccggatcagtcagcaaaggctgagtgaagagctttgac---ttatcccattacctggagtgaagagctttgacttatcctgttacctggcggtaatgagacaccacctagatccatcaggcttatgtcagaggaaaccaactgcggatcttggactttcaccactgc-ctatcagta--atgagccgc-ctccacactgtggtgt-----------------tagtgaagcccatgcgaagagcctggactt-ccacctg-ccccattggaaggaagcactc-----ctcacccactttgccagggtgttgtcagaggaggccaagtagaaatctgagactttcatcactgcccaggtgtaaggaggcactcctcccttcctggtgtcagcagacgccatgtggaagcagtgatgagtccctctccttc--ctagtcaggattgtgtaagtggaggcctagtggagagcctgaacttcc
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      256903 465 +    446445 agtaaccgtgctactccagtcaaa---cacagaaaaatcagtgg-------ctcccatc-ccggatcagtcagcaaaggctgagtgaagagctttcacttattatccca--------------------------------ttgcctggcggtaataagacaccacctagacccgtcaggcttatgtcagaggaagccaaccggggatctaggactttcaccactgc-ctatcagta--atgagccgc-ctccacactgtggtgt-----------------ta-tgaagcccatgcaaagagcctggactt-ccacctg-ccccatcggaagaaagcactc-----ctcacccattttaccagggtgttgtcagaggaggccaaatagaaatctgagactttcaccactgcccaggtataaggaggcactcctcccttcctggtgtcagcggaggccatgtggaagcagtgatgagtccctctccctc--ccagtcaggattgtgtaagtggaggcctagtggggagtctgaatttcc
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15321624 369 -  18854210 aatgaccacactactccagccaaacaccacagaaaaatctgtgg-------ctctcactgtggcctccatcagcaaa------------------gcc---t----cca--------------------------------tctcttggatataaagagttactccctgaacccatggagcttgtgtcataggaagcttactaaggagccaggctttttaccactgc-ctgtcagtaacacctgacactctccacgctctggtgc-----------------ta----------tgtgaagaaactggactt-ctaccag---ctgtcatgagggagccctcacccactcacccactccaccagggtgctgccagaggaggccatgtgggaac------------------------------------------------------------------------agcaatgaggtgtctctaaccctc--ccaatctggattgtttaagtgaaggcctagcggggatcctgaatttct
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70377609 412 -  72498081 cataatcatactactctac--------tacagaaaaatctgtgtcccctccctccactc-ccatttcaggtagcaaaggctgagtggggagcctagac---t-accacc--------------------------------caccctggccatagaaaggcaccctctaaacccattaggactgttccagaggaagcctactcaggatccaggactttcaccactgctctatcagta--ataggccac-ctccacactgtggcat-----------------tagtgaagtctctatagggggcctggactt-ctacccaacccagtggtaacgaggcagcc-----cttgccttctctgccaggttattgtcacaagaagccaagtggaaatctcatacttttaccactaccc--------------------------------------------------------ttacaagatgctcctcatctgccagtctgggtagtataagcagaggcctcatggggagtctgaattttt
i canFam3.chr12            C 0 I 7050
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=2533289.000000
s hg38.chr6_KI270758v1_alt     24589 278 +     76752 atacccagcCtgcagccacaaggcacccctgccagagagccttcagttctaagttcaccaggaattgaacctgtcagcatcttgatcttggacttcccagcctccaggactgtgagaaaCAcagagggtcctcctacagcattgttttgttcaacg---ttttgttacaatgttggtgagaaaataaataggttcctggccagggccactgtccatgaggagtttgtgtgttctccccacgtccgcatgggttttctt-tgtgtatttgagttttatcccac
s panTro5.chr6             142724358 278 - 175400573 atacccagcCtgcagccacaaggcacccctgccagagagccttcagttcaaagttcaccagaaattgaacctgtcagcaccttgatcttggacttcccagcctccaggactgtgagaaacacagagggtcctcctatagcgttgttttattcaacg---ttttgttacaatgttggtgagaaaataaataggttcctggccagggccactgtccatgaggagtttgtgtgttctccccacgtccgcatgggttttctt-tgtgtacttgagttttatcccac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140875953 278 - 173848474 atacccagcCtgcagccacaaggcacccctgccagagagccttcagttcaaagttcaccagaaattgaacctgtcagcaccttgatcttggacttcccagcctccaggactgtgagaaacacagagggtcctcctatagcgttgttttattcaacg---ttttgttacaatgttggtgagaaaataaataggttcctggccagggccactgtccatgaggagtttgtgtgttctccccacgtccgcatgggttttctt-tgtgtacttgagttttatcccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2393714 278 +   2807050 atacccagcCtgcagccacaaggcacccctgccagagagcctgcagttcaaagttcaccaggaattgaacctgtcagcaccttgatcttggacttcccagcctccaggactgtgagaaacacagagggtcctcctatagcgttgttttattcaacg---ttttgttacaatgttggtgagaaaataaataggttcctggccagggccactgtccatgaggagtttgtgtgttctccccacgtccgcatgggttttctt-tgtgtacttgagttttatcccac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45686612 281 - 122973662 atacccagcCtgcagccacaaggcacccctgccagagagccttcagttctaagttcaccaggaattgaacctgtcagcaccttgatcttggacttttcagcctccaggactgtgagaaacacagagggtcctcctatagcattgttttgttcaacgtcattttgttacaatgttggagagaaaataaataggttcctggccagggccactgtccatgaggagtttgtgagttctccccacgtctgcatgggttttgtt-tgtgtacttgagttttatcccac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139310696 281 - 172585720 atacccagcCtacagccacaaggcgcccctgccagagagccttcagttctaagttcaccaggaatcgaacctgtcaacaccttgatctttgacttcccagcctccaggaccgtgagaaacacagagggtcctccgatagcattgctttgttcaacattgttttgttgcaatgttggtgagaaaataaatagattcctggccagggccactgtccatgtggagtttgtgtgttctccctacgtctgcatgggttttctt-tgtgtactttagttttgtcccac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138471005 281 + 170955103 atacccagcCtacagccacaaggcgcccctgccaaagagccttcagttctaagttcaccaggaatcgaacctgtcaacaccttgatctttgacttcccagcctccaggaccgtgagaaacacagagggtcctccgatagcattgctttgttcaacattgttttgttgcaatgttggtgagaaaataaatagattcctggccagggccactgtccatgtggagtttgtgtgttctccctacgtctgcatgggttttctt-tgtgtactttagttttgtcccac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      187229 281 +    407600 atacccagcCtacagccacaaggcgcccctgccagagagccttcagttctaagttcaccaggaatcgaacctgtcaacaccttgatctttgacttcccagcctccaggaccgtgagaaaCAcagagggtcctccgatagcattgctttgttcaacattgttttgttgcaatgttggtgagaaaataaatagattcctggccagggccactgtccatgtggagtttgtgtgttctccctacgtctgcatgggttttctt-tgtgtactttagttttgtcccac
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       59604 281 +    463628 acacccagcCtacagccacaaggcgcccctgccagagagccttcagttctaagttcaccgggaatcgaacctgtcaacaccttgatctttgacttcccagcctccaggaccgtgagaaaCAcagagggtcctccgatagcattgctttgttcaacgttgttttgttacaatgttggtgaaaaaataaatagattcctggccagggccactgtccatgtggagtttgtgtgttctccctacgtgcgcatgggttttctt-tgtgtactttagttttgtcccac
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39637806 281 +  71996105 acacccagcCtacagccacaaggcgcccctgccagagagccttcagttctaagttcaccaggaatcgaacctgtcaacaccttgatctttgacttcccagcctccaggaccgtgagaaacacagagggtcctccgatagcattgctttgttcaacgttgttttgttgcaatgttggtgagaaaataaatagattcctggccagggccactgtccatgcggagtttgtgtgttctccctacgtccgcatgggttttctt-tgtgtactttagttttgtcccac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       59235 281 -    115496 acacccagcCAAcagccacaaggcgcccctgccagagagccttcagttctaagttcaccaggaatcgaagctgtcaacaccttgatctttgacttcccagcctccaggaccgtgagaaaCAcagagggtcctccgatagcattgctttgttcaacgttattttgttacaatgttggtgagaaaacaaatagatttctggccagggccactgtccatgcggagtttgtgtgttctccctacgtccgcatgggttttctt-tgtgtactttagttttgtcccac
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138631387 276 - 171630274 ata-ccAGCCtacagccacaaggcacccctgccagagagccttcagttctaagctcaccaggaatc-aacctgtccacaccttcattttggacttcccagcctctagaactgtgagaaacacagggggtcctccaatagcatttttttgctcaacgttgttttgttacaatgttgatgaaaaaagaaatagattcctggccagggccactgtccatgtggagtttgtgtgttcgtcccacatctgcatggatttcttt-tgggtactt-ggttttgttcc--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            188322 280 +   1154217 atacccagcCtgcagccacaaggcacccctgccagagagccttcagttctaagttcaccaggaatc-aacctgtccacaccttcctcttggacttcccaggcttcaggcctgtgagaaacaaaGAGAgtcctccaatagcattgttttgctcaacgatgttttgttacaatgttgatgagaaaagaaatagactcctggccagggccactgtccatttggagtctgtgtgttctccccatgtctacatgggtttttttatgtgtactt-agtttttttccac
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14014344 279 +  15232693 aTA-TCAGCCtgcagccacaaggcatccctgccagagagccttcagttctaagctcaccaggaatcaaacctgtccacaccttgatcttggatttcccagcctccagaactgtgagaaacacagggggtcctccaataacactgttttgctcaacgttgttttgttacaatgttgatgaggaaagaaatagattcctggccagggccactgtccatgtggagtttgtgtgttcatcccacgtctgcatggattttttt-tgggtactt-agttttgttccac
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      257368 280 +    446445 atacccagcCtgcagccacaaggcacccctgccagagagccttcagttctaagttcaccaggaatc-aacctgtccacaccttcatcttggacttcccaggcttcaggactgtgagaaacaaaGAGAgtcctccaatagcattgttttgctcaacgttgttttgttacaatgttgatgagaaaagaaatagattcctggccagggccatcgtccatgtggagtttgtgtgttctccccttgtctacatgggttttttggtgtgtacct-agtttggttccac
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15321993 237 -  18854210 ata-gcaccctgaagccacgaggcacccccacAAGAGAGCTCTGAGTTTCAAGTtcaccagaaactgaacctgtcagcaccttgctcttggactttgcagcctccaggacggtgagaaataTGgcagatcctcaaatagcattgttttattcaatgtcattttgttacaatgctgatgagaaaaataattgattc-------------------------------------------atgtctgcattggttttctt-tgggtacccctgtttcctcccac
i otoGar3.GL873550         C 0 I 1238
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=473728.000000
s hg38.chr6_KI270758v1_alt     24867 52 +     76752 atcccaaagacatgcatgttaggttaattggtgagtctaaattgtcccagca
s panTro5.chr6             142724636 50 - 175400573 atcccaaagacatgc--gttaggttaattggtgagtctaaattgtcccagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140876231 50 - 173848474 atcccaaagacatgc--gttaggttaattggtgagtctaaattgtcccagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2393992 50 +   2807050 atcccaaagacatgc--gttaggttaattggtgagtctaaattgtcccagca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45686893 52 - 122973662 atcccaaagacgtgcatgttaggttaattggtgagtctaaattgtcccaaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139310977 52 - 172585720 atcccaaagacgtgcatgttaggttaattggtgagtctgaattgtcccagCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138471286 52 + 170955103 atcccaaagacgtgcatgttaggttaattggtgagtctgaattgtcccagCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      187510 52 +    407600 atcccaaagacgtgcatgttaggttaattggtgagtctgaattgtcccagCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       59885 52 +    463628 atcccaaagacgtgcatgttaggttaattggtgagtctaaattgtcccagCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39638087 52 +  71996105 atccgaaagacgtgcatgttaggttaattgttgagtctaaattgtcccagCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       59516 52 -    115496 atcccaaagacgtgcatgttaggttaattggtgagtctaaattgtcccagCA
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138631663 43 - 171630274 ---------atgtgcatgttaggttaattggtgagtctaaattgtcccacca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            188602 52 +   1154217 atcctaaagatgtgtacgttaggttaattggtgagtctaaattgtcccacaa
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14014623 52 +  15232693 atcccaaagatgtgcatgttaggttaattggtgagtctaaattgtcccacca
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      257648 52 +    446445 atcccaaatatgtgcatgctaggttaattggtgagtctaaattgtcccacca
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15323468 52 -  18854210 atccccaaaatgtgcatattacattaactggcaggtctgcattgtcccagta
i otoGar3.GL873550         I 1238 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=67985.000000
s hg38.chr6_KI270758v1_alt     24919 28 +     76752 gagtgactt----------------------------tgtgtgtatgtgtgtgtgt
s panTro5.chr6             142724686 40 - 175400573 gagtgactc----------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140876281 26 - 173848474 gagtgactc------------------------------tgtgtgtgtgtgtgtgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2394042 32 +   2807050 gagtgactc------------------------tgtgtgtgtgtgtgtgtgtgtgt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45686945 56 - 122973662 gagtgactctgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138631706 27 - 171630274 gagtgactc----------------------------tgtgtgtgtgtgtgcgtg-
i calJac3.chr4             C 0 I 7
s saiBol1.JH378315            188654 28 +   1154217 gagtgactc----------------------------tgtgtgtgtgtgtacgtgt
i saiBol1.JH378315         C 0 I 20
s cebCap1.NW_016107339v1    14014675 31 +  15232693 gagtgactc-------------------------gtgtgtgtgtgtgtgtgtgtgt
i cebCap1.NW_016107339v1   C 0 I 20
s aotNan1.NW_018508875v1      257700 28 +    446445 gagtgactc----------------------------tgtgtgtgtgtgtgtgtgt
i aotNan1.NW_018508875v1   C 0 I 99
s otoGar3.GL873550          15323520 27 -  18854210 gagagattg----------------------------tgggtg-atttgtgagtga
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       59568  0 -    115496 C
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138471338  0 + 170955103 C
e rheMac8.chr4             139311029  0 - 172585720 C
e macNem1.NW_012013344v1      187562  0 +    407600 C
e chlSab2.chr17             39638139  0 +  71996105 C
e cerAty1.NW_012003702v1       59937  0 +    463628 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=172434.000000
s hg38.chr6_KI270758v1_alt     24947 64 +     76752 gtctgcatcccacaatggatgggatggcatcctatacaaggttggttcctctcttgtccttgag
s panTro5.chr6             142724726 64 - 175400573 gtctgcatcccacaatggatgggatggcatcctatacaagattggttcctgtcttgtccttgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140876307 64 - 173848474 gtctgcatcccacaatggatgggatggcatcctatacaagattggttcctgtcttgtccttgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2394074 64 +   2807050 gtctgcatcccacaatggatgggatggcatcctatacaagattggttcctgtcttgtccttgag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45687001 64 - 122973662 gtctgcatcccacaatggatgggatggcatcctatacaaggttagttcctgtcttgtccttgag
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138631740 64 - 171630274 gtctgcatcccacaatagatggaatggcatcctataaaagattggttcctgtcttgttcttgag
i calJac3.chr4             I 7 C 0
s saiBol1.JH378315            188702 64 +   1154217 gtctgcatcccacaatagatgggatggcatcctataaaacattggttcctgtcttgtccttgag
i saiBol1.JH378315         I 20 I 2
s cebCap1.NW_016107339v1    14014726 64 +  15232693 gtcttcatcccacaatagatggaatggcatcctataaaagattggttcctgtcttgtccttgag
i cebCap1.NW_016107339v1   I 20 C 0
s otoGar3.GL873550          15323547 54 -  18854210 ------gctctacaatgga----atggtatcctggtcaaagttggatcctgccttgcctgtgag
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       59568  0 -    115496 C
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e aotNan1.NW_018508875v1      257728 99 +    446445 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138471338  0 + 170955103 C
e rheMac8.chr4             139311029  0 - 172585720 C
e macNem1.NW_012013344v1      187562  0 +    407600 C
e chlSab2.chr17             39638139  0 +  71996105 C
e cerAty1.NW_012003702v1       59937  0 +    463628 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=419359.000000
s hg38.chr6_KI270758v1_alt     25011 227 +     76752 ctgccgggataggctccag-----tcatccatgaccttgaactggaataagcaggttggaaaatgaataagcgaatgaatagaaatgtttctaaaataaaaatttgtaaagtacatg-----atattcatacaactgtacaatagtaaacaatggggtacaaaagtactcagtgagttcaacgtatttgttcttctttgtgtttgagctgtgtggtggcaggaggtgctccttacca
s panTro5.chr6             142724790 227 - 175400573 cttccgggataggctccag-----tcacccacgaccttgaactggaataagcaggttggaaaatgaataagcgaatgaatagaagtgtttctaaaataaaaatttgtaaagtacatg-----atattcatacaactgcacaatagtaaacaatggggtacaaaagtactcagtgagttcaacatatttgttcttctttgcgtttgagctgtgtgatggcaggaggtgctccttacca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140876371 227 - 173848474 cttccgggataggctccag-----tcacccacgaccttgaactgaaataagcaggttggaaaatgaataagcgaatgaatagaagtgtttctaaaataaaaatttgtaaagtacatg-----atattcatacaactacacaatagtaaacaatggggtacaaaagtactcagtgagttcaacgtatttgttcttctttgcgtttgagctgtgtgatggcaggaggtgctccttacca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2394138 227 +   2807050 ctgccgggataggctccag-----tcacccacgaccttgaactggaataagcaggttggaaaatgaataagcggatgaatagaaatgtttctaaaataaaaatttgtaaagtacatg-----atattcatacaactgcacaatagtaaacaatggggtacaaaagtactcagtgaggtcaacatatttgttcttctttgcgtttgagctgtgtggtggcaggaggtgctccttacca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45687065 226 - 122973662 ctgccgggatagactgcag-----tcacccacgaccttgaactggaataagcaggttggaaaatgaataagcaaatgaatagaaatg-ttctaaaataaaaatttgtaaagtacacg-----attttcatacaactgcataatagtaaaccatggggtacaaaagtactcagtgagttccacatatttgttcttctttgcatttgagctgtgtggtggcaggaggtgctccttacca
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138631804 231 - 171630274 atgctggggtgagctccagtccactcacccacaaccttgaaccggaataagcaggttagaaaatgaataagtgaatgaatagacattattataaaataaaaatgtgtacagtacatg-----atattcatacaaaggtacaaaaataaacaatgctgtacaaaagtactcagtgagttcaacacgtttgctcttctttgcgtttgaactgtgtgg-ggcaggaggtgctctttacaa
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14014790 228 +  15232693 atgctggggtaggctccggtctactcacccacaaccttgaacaggaataagcaggtaggaaaatgaataagtgaatcaatagacattattataaaataaaaatgtgtacagtacatg-----atattcatacaaatgcac---aataaacaatgcagtacaaaagtactcagtgagttcaacatgcttgttcttctttgcgtttgaactgtgtgg-ggcaggaggtgctttttacaa
i cebCap1.NW_016107339v1   C 0 C 0
s otoGar3.GL873550          15323601 221 -  18854210 ctgccaggacaggctcagg-----tcacttgagactctaaactagaataa-----ctagaaaatgaataaataaatgaatacaaattattgtaaaacaaaaatgtgtagggt-tatgctcctgtaatcatacaactgaatggcagt-aatgacgtcctacaaaggcactcagtgagcccactgtgctcgtggttgtt----tttgaactgcatggtgggaggggatgctctttacag
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       59568   0 -    115496 C
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e aotNan1.NW_018508875v1      257728  99 +    446445 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            188766   2 +   1154217 I
e macFas5.chr4             138471338   0 + 170955103 C
e rheMac8.chr4             139311029   0 - 172585720 C
e macNem1.NW_012013344v1      187562   0 +    407600 C
e chlSab2.chr17             39638139   0 +  71996105 C
e cerAty1.NW_012003702v1       59937   0 +    463628 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=6552.000000
s hg38.chr6_KI270758v1_alt     25238 2 +     76752 tt
s panTro5.chr6             142725017 2 - 175400573 tt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140876598 2 - 173848474 tt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2394365 2 +   2807050 tt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45687291 2 - 122973662 tt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138632035 2 - 171630274 tt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            188768 2 +   1154217 tt
i saiBol1.JH378315         I 2 C 0
s cebCap1.NW_016107339v1    14015018 2 +  15232693 tt
i cebCap1.NW_016107339v1   C 0 C 0
s otoGar3.GL873550          15323822 2 -  18854210 tt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       59568 0 -    115496 C
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e aotNan1.NW_018508875v1      257728 99 +    446445 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138471338 0 + 170955103 C
e rheMac8.chr4             139311029 0 - 172585720 C
e macNem1.NW_012013344v1      187562 0 +    407600 C
e chlSab2.chr17             39638139 0 +  71996105 C
e cerAty1.NW_012003702v1       59937 0 +    463628 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=832174.000000
s hg38.chr6_KI270758v1_alt     25240 255 +     76752 ttcattttacaaacatttgttccttaatgtaacccaccaccactgtgaccaccatcactcactaattcaccaaaaactggataattaattatcttacttgttattataaacctaccttaaatgtatatatagttcccatttattttaatgtttaatattagaagtgttctgagtctttatttaggagtttggtgatgtgtttgtgaccagaaataagccacaggaacttaaatcttgttcgcatcaattagccca
s panTro5.chr6             142725019 255 - 175400573 ttcattttacaaacatttgttccttaatgtaacccaccaccactgtgactgccatcactcactaattcaccaaaaactgggtaattaattatcttacttgttattataaacctaccttaaatgtatatatagttcccatttattttaatgtttaatattagaagtgttctgagtctttatttaggagtttggtgatgtgtttgtgaccagaaataagccataggaacttaaatcttgtttgcatcaattagccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140876600 255 - 173848474 ttcattttacaaacatttgttccttaatgtaacccaccaccactgtgaccgccatcactcactaattcaccaaaaactgggtaattaattatcttacttgttattataaacctaccttaaatgtatatatagttcccatttattttaatgtttaatattagaagtgttctgagtctttatttaggagtttggtgatgtgtttgtgaccagaaataagccataggaacttaaatcttgtttgcatcaattagccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2394367 254 +   2807050 ttcattttacaaacatttgttccttaatgtaacccaccaccactgtgaccgccatcactcactaattcaccaaaaactgggtaattaattatcttacttgttattataaacctaccttaaatgtatatatagttcccatttattttaatgtttaatattagaagtgttctgagtctttatttaggagtttggtgatgtg-ttgcgaccagaaataagccataggaacttaaatcttgtttgcatcaattagccca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45687293 250 - 122973662 ttcattttacaaacatttgttccttaatgtaacccaccaccactgtgaccgtcatcactcactaattcaccaaaaactggg----taattatcttacttgttattataaacctaccgtaaatgtatatatagttcccatttattttaaagtttaatattagaagtgttctgagtctttatttagaagttt-gtgatgtgtttgtgaccagaaataagccataggaacttaaatcttgtttgcatcaattagccca
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138632037 248 - 171630274 ttcatttcacgaacatttgtttcttaatgtggcccaccaccactgtgactgccatcactcactaattcaccaaaaactggg----taattatcttaattgtttttataaatctaccttaaatatatatatagttctcatttatcttaatgtttaatattagaagtgttctgagtctttatttagaagtttgg---tgtttttgtgatgagaaataggccatagaaatttaaatcttatttatatcaattagccca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            188770 226 +   1154217 ttcattttacaaacatttgttccttaatgtgacccac----------------------cactaattcactaaaaactggg----taaatatcttagttgtttttataaatctaccttaaatgtatatatagttctcatttattttaatgtttaatattagaagtgttctgagtctttatttagaagtttgg---tgtttttgtgaccagaaacaggccatagaaacttaaatcttgtttatatcaattagccca
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14015020 246 +  15232693 ttcattttacaaacatttgttccttaatgtggcccaccaccactgtgactgccatcactcactaattcaccaaaaactggg----tga--atcttagttgtttttataaatctaccttaaatgtatatatagttctcatttattttaatgtttaatattagaagtgttctgagtctttatttagaagtttgg---tgtttttgtgaccagaaataggccatagaaacttaaatcttgtttatatcaattagccca
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      257827 248 +    446445 ttcattttacaaacatttgttccttaatgtgacccaccaccactgtgactgccatcactcactaattcaccaaaaactggg----taattatcttagttgtttttataaatctaccttaaatgtatatatagttctcatttattttaatgtttaatattagaagtgttctgagtctttatttagaagtttgg---tgtttttgtgaccagaaataggccatagaaacttaaatcttgtttatatcaattagttca
i aotNan1.NW_018508875v1   I 99 C 0
s otoGar3.GL873550          15323824 236 -  18854210 gtcactttgcaaacagttattcctcaatttaactcaccaccactgtgacctccttcactcactagttcaccaaaaatcagg----taa--------atggtttttacgaatcctccttaagtgtatgcatagctcacgtttat-------tttaatcttagaagtgctttggatctttgtttaaaagtttggtgatgtttttgtgagcagacatctattgtaggaacttaaatcttgtttgaatcaattagctca
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       59568   0 -    115496 C
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138471338   0 + 170955103 C
e rheMac8.chr4             139311029   0 - 172585720 C
e macNem1.NW_012013344v1      187562   0 +    407600 C
e chlSab2.chr17             39638139   0 +  71996105 C
e cerAty1.NW_012003702v1       59937   0 +    463628 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=460515.000000
s hg38.chr6_KI270758v1_alt     25495 174 +     76752 gggGTTCCCAACCCCTGGGCCACAGACCACTAATGg---------------------------------------------------------------------------------------------cctgctgtcagatcggcagaggcattggattctcacaggagtgcaaacctttgtgaactgtattgtggactgcccatgcgagggatctaggttgtgccatcccactccctgccaccgctagtccccaacccccatcca
s panTro5.chr6             142725274 174 - 175400573 gggGTTCCCAACCCCTGGGCCACAGACCACTAATGg---------------------------------------------------------------------------------------------cctgctgtcagatcagcagaggcattggattctcacaggagtgcaaacctttgtgaactgcattgtggactgcgcatgcgagggatcgaggttgtgccatcccactccctgccaccgctagtccccaacccccatcca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140876855 174 - 173848474 gggGTTCCCAACCCCTGGGCCACAGACCACTAATGg---------------------------------------------------------------------------------------------cctgctgtcagatcagcagaggcattggattctcacaggagtgcaaacctttgtgaactgcattgtggactgcgcatgcgagggatcgaggttgtgccatcccactccctgccaccgctagtccccaacccccatcca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2394621 174 +   2807050 gggGTTCCCAACCCCTGGGCCACAGACCACTAATGg---------------------------------------------------------------------------------------------cctgctgtcagatcagcagaggcattggattctcacaggagtgcaaacctttgtgaactgtattgtggactgcgcatgcgagggatcgaggttgtgccatcccactccctgccaccactagtccccaacccccatcca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45687543 174 - 122973662 gggGTTCCCAACCCCTGGGCCACAGACCACTAATGg---------------------------------------------------------------------------------------------cctgctgtcagatcagcagaggcactggactctcacaggagtgcaaacccttgtgaactgtattgtggactgcgcatgcgagggatctaggttgtgccatcccactccctgccaccgctagcccccgacccccatcca
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138632285 250 - 171630274 ggggttgggaaatcctggaccacagaccactaatggtctgtggcctgttacgaaccaggccaca-----------------cagcccgaggtgagcagcaggtgagggagcattactgcctgagctccacctgctgtcagagcagcaaaggcattggattatcacagaagcgtgaatgcttttgaactgcattgtggactgcgcataccagggatctaggttgaaccatcccactccctgcccctgctaatcctcaaccaccactca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            188996 250 +   1154217 ggggttgggaatccctggaccacagaccactaatggtctgtggcttgttagcaaccaggccaca-----------------cagtcggaggtgagcagcaggcaagggagcattactgcctgagctccacctgctgtcagagcagcaaaggcattggattctcacaggagcgtgaatgcttttgaactgcattgtagactgcgcatgccagagatctaggctgtaccatcccactccctgcccctgctaaccctcgacccccactca
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14015266 250 +  15232693 ggggttgggaaccactggaccacagaccactaatggtctgtggcctgttaggaaccaggccaca-----------------cagccggaggtgagcagccggcgagggagcattactgcctgagctccacctgctggcagagcggcaaaggcattggattctcacaggagcgtgaatgcttttgaactgcattgtggactgcgcatgccagggatctaggttgtaccatcccactccctgcccctgctaaccctcgacccccactca
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      258075 250 +    446445 ggggttgggaaccgctggaccacagaccactaatgctctgtggcctgttaggaaccaggccacacagccggaggtgagcagca-----------------ggcgggggagcattactgcctgagctccacctgctgtcagagcggcaaaggcattggattctcacaggagagtgaatgcttttgaactgcattgtggactgtgcatgccagcgatctaggttgtaccatcccactccctgcccctgctaatcctcgacccccaccca
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       59568   0 -    115496 C
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138471338   0 + 170955103 C
e rheMac8.chr4             139311029   0 - 172585720 C
e macNem1.NW_012013344v1      187562   0 +    407600 C
e chlSab2.chr17             39638139   0 +  71996105 C
e cerAty1.NW_012003702v1       59937   0 +    463628 C
e otoGar3.GL873550          15324060   0 -  18854210 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=2534208.000000
s hg38.chr6_KI270758v1_alt     25669 805 +     76752 tggcaaaattttcttccacaaaaccagtccctggtgccaaaaatgttggggatcgctgaattagcctatggtcaaattag-ttttattatatgtcattttgcttaaagtcacagcttctaagaacctattgatgatgttaagtgaggactt------TCAGTAAATG----------------TCTGTTGTTTAATCTACTCCATCTGAGTGTCAATGGAGCCAAGTAGAGGACATGGAATTTCACATC-ATCTggcagttttggggtgagagttacatatttaagtcagtagattttaagtaaagtacattgccctccataac-tgggttcccctcatttaatcagttgaatgcctgattagcataagagggaactctccaacagattgtc-tcagactccatctgcaatcctggctcttcctggttccacagcagactacctttgggctcaaactgcaactctgt-cccagtctcctccactgctggcctcttccatcagaatttggactcagtaagcttccacaatcatgtgagcaaattctttaaaagaagtatctttctatatatacatatcctgttagtacaactgctctggagcacc--taatacaGatcccaagggcattattctgagtacaaaatgccagtctcggaaggtcacatatagtataattccatttatataacattttctaaatgataaaattatacagatgaaaatcaaattagtggttggcacagtgtagggatggtggggg---gtgggggaatggtgtgactcttaaggagggcgagtggcatgaggaagatctttgtggtgatggaatatagttct
s panTro5.chr6             142725448 791 - 175400573 tggaaaaattttcttccacaaaaccagtccctggtgccaaaaatgttggggatcgctgaattagcctatggtcaaattag-ttttattatatgtcattttgctttaagtcacag---ctaagaacctattgatgatgttaagtgaggactt--------------TG----------------TCTGTTGTTTAATCTACTCCATCTGAGTGTCAATGGAGCCAAGTAGAGGACATGGAATTTCACATC-ATCTggcagttttggggtgagagttacatatttaagtcagtagattttaagtaaagtacattgccctccgtaac-tgggttcccctcatttaatcagttgagtgcctgactagcataagagggaactctccaacagattgcc-tcagactccatctgcaatcctggctcttcctggttccacagcagactacctatgggctcaaactgcaactctgt-cccagtctcctccactgctggcctcttccatcagaatttggactcagtaagcttccacaatcatgtgagcaaattctttaaaagaaatatctttctatatatacatatcctattagtacaactgctctggagcacc--taatacaGatcccaagggcattattctgagtacagaatgccagtctcggaaggtcacgtatagtataattccatttatataacattttctaaatgataaaattatacagatgaaaatcaaattaatggttggcacagtgtagggacagtggggg---gtgggggaatggtgtgactctt---gagggcgagtggcatgaggaagatctttgtggtgatggagtacagttct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140877029 791 - 173848474 tggaaaaattttcttccacaaaaccagtccctggtgccaaaaatgttggggatcgctgaattagcctatggtcaaattag-ttttattatatgtcattttgctttaagtcacag---ctaagaacctattgatgatgttaagtgaggactt--------------TG----------------TCTGTTGTTTAATCTActccatctgagtgtcaatggagccaagtagaggacatggaatttcacatc-atctggcagttttggagtgagagttacatatttaagtcagtagattttaagtaaagtacattgccctccgtaac-tgggttcccctcatttaatcagttgagtgcctgactagcataagagggaactctccaacagattgcc-tcagactccatctgcaatcctggctcttcctggttccacagcagactacctatgggctcaaactgcaactctgt-cccagtctcctccactgctggcctcttccatcagaatttggactcagtaagcttccacaatcatgtgagcaaattctttaaaagaaatatctttctatatatacatatcctattagtacaactgctctggagcacc--taatacaGatcccaagggcattattctgagtacagaatgccagtctcggaaggtcacgtatagtataattccatttatataacattttctaaatgataaaattatacagatgaaaatcaaattagtggttggcacagtgtagggacggtggggg---gtgggggaatggtgtgactctt---gagggcgagtggcatgaggaagatctttgtggtgatggagtacagttct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2394795 793 +   2807050 tggaaaaattttcttccacaaaaccagtccctggtgccaaaaatgttggggatcgctgaattagcctatggtcaaattag-ttttattatatgtcattttgcttaaagtcacagcttctaagaacctattgatgatgttaagtgaggactt--------------TG----------------TCTGTTGTTTAATCTACTCCGTCTGAGTGTCAATGGAGCCAAGTAGAGGACATGGAATTTCACATC-ATCTggcagttttggggtgagagttacgtatttaagtcagtagattttaagtaaagtacattgccctccgtaac-tgggttcccctcatttaatcagttgaatgcctgactagcataagagggaactctccaacagattgcc-tcagactccatctgcaatcctggctcttcctggttccacagcagactacctatgggctcaaactgcaactctgt-cccagtctcctccactgctggcctcttccatcagaatttggactcagtaagcttccacaatcatgtgagcaaattctttaaaagaaatatctttctatatatacatatcctgttagtacaactgctctggagcacc--taatacaGatcccaagggcattattctgagtacaaaatgccagtctcggaaggtcacgtatagtataattccatttatataacattttctaaacgataaaattatacagatgaaaatcaaattagtggttggcacagtgtagggacggt-gggg---gtgggggaatggtgtgactctt---gagggcgagtggcatgaggaagatctttgtggtgatggagtacagttct
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45687717 803 - 122973662 tggaaaaattttattccacaaaaccggtccctggtgccaaaaatgttggggatcgctgaattagcctatgg-caaattag-ttttattatatgtcattttgcttaaagtcaaagcttctgagaacctattgattatgttaagtgaggactt------TCAGTAAATG----------------TCTGTTGTTTAATCTACTCCATGTGAGTGTCAATGGAGCCAAGTAGAGGACATGGAATTTCACATC-ATCTggcagttttggggtgagagtttcatatttaagtgagtagattttaagtaaagtacattgccctccataat-tgggttcccctcgttcaatcagttgaacgcctgactagcataagagggaactctccaacagattgcc-tcagactccatctgcagtcctggctcttcctggttccacagcagaccacctttgggctcaaactgcaactctttccccagtcttctccactgctggcctcttccgtcagaatttggactcagtaagcttccacgatcatgtgagcaaattctttaaaagaaatatctttctatatatacatatcctattggtacaactgctctggagcacc--taatacaGatcccaagggcattattctgaggacaaaatgctggtctcggaaggtcac--atagtataattccatttatataacattttctaaatgataaaattatacagaagaaaatcaaattagtggttggcacagtgtagggatggtggggg---gtgggggaatgacgtgactcttaaggagggtgaatggcatgaggaagatctttgtggtgatggaatatagttct
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138632535 806 - 171630274 cagaaaaattttatttcacaaaaccagtccctggtgccaaaaatgttggggactgctgaattagcctacgagaaaattgg-ttttattatatgtcatttggcttaaagtcacagtttccaagaacctattaaggatattaagtaaggactt------tctgTAAATG----------------TCTGTTGTTTAATCCACTGCAC-TGGGTGTCAGTGGAGCCAAGTAGAGGAAGTGGAATTTCACATC-ATCTggcagttttaaggtgagagttacatatttaagtcagtagatttggagtgaagcacattgcccttcataatgtgggttcccttcattcagtcagttgaaggcctgactgac-taagagggaactctccaccagactgccttcagactccaactgcagccccggctcttcctggttccacagcagactgcctttggactcaaactgcagctctgtccccagtcccctccactgctggcctcctccaccagagtttggactcagtaagcttctgcaagcatgtgagcaaattctttaaaagaaatatctttctatatatacatatagtattggtacagttgctctggagcaccc-taatacaGatcccaggggcattattctgagtaaaaaatgacaatctcagaaggtcacatatagtataatttcatttatataacattttctgaatgacaaaattatacagataaaaacgaaattagtggctggcatagggtagggatggtggggg--ggtgggggaatgg-gttacccttaagcaggg-gagcggcatgaggaaaatctttgtggtgatggaatatagttct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            189246 806 +   1154217 tagaaaaattttatttcacaaaaccagtccctggtgccaaaaatgttggggattgctgaattagcctatgggaaaattggtttttattatatgtcatttggcttaaagtcacagtttctaagaacctattaatgatattaagtgaggactt------tctgTAAATG----------------TCTGTTGTTTAATCCACTGCATGTGGGTATCAGTGGAGCCAAGTAGAGGACATGGAATTTCACATC-ATCTggcagttttggggtgagagttacatatttaagtcagtagattttgagtgaagcacattgcccttcataatgtgggtcctcttcat----tcaattgaaggcctgactggcataagagagaactctccaccagactgccttcagactccatctgcagccccggttcttcttggttccacagcaggctgcctttggactcaaactgcagctctgtccccagtctcctccactgctggcctcctccaccagagtttggactcagtaagcttccacaatcatgtgagcaaattcttt-aaagaaatatctttctatatatacacatattattggtacaattgctctggagcaccc-taaTacggatcccaagggcattattctgagtacaaaatgacgatctcagaaggtcacatataggataattccatttatataacattttctgaatgataaaattacacagataaaaaccaaattagtggttggcacagggtagggatggtggggg--tgtgcaggaatggtgttacccttaaggggggtgagtagcatgagaaagatctttgtggtgatggaatatagttct
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14015516 812 +  15232693 tggaaaaattttctttcacaaaaccagtccctggtgccaaaaatgttggggattgctgaattagcctatgggaaaattggtttttattatatgtcatttggcttaaagtcacagttgctaagaacctattaatgatattaagcgaggactt------tctgTAAATG----------------TCTGTTGTTTAATCCACTGCATCTGGGTGTCAGTGGAGCCAAGTAGAGGAAGTGGAATTTCACATC-ATCTggcagttttggggtgagagttacatatttaagttagcagattttgagtgaagcacattgcccttcataatgtgggtccccctcattcaatcagttgaaggcctgactggcatgaaaggaaactctccaccagactgtcttcagactccatctgcagccccggctcttcctggttccacagcagactgcctttgaactcaaactgcagctctgtccccagtctcctccactgctggcctcctccaccagagtttggactcagtaagcatccacaatcatgtgagcaaattctttaaaagaaatatctttctatatatacacatattattggtacaattgctctggagcacccttaatacaGatcccaagggcattattctgagttcaaaatgacaatctcagaaggtagcatatagtataattccatttatgtaacattttctgaatgacaaaattatacagataaaaaccaaattagtggttggcacagggtagggatggtgggag--ggtgggggaatggtgatacccttaaggggggcaagtggcatcaggaagatctttgtggtgatggaatatagttct
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      258325 801 +    446445 tagaaaaattttctttcacaaaaccagttcgtggtgccaaaaatgttgaagattgctgaattagcctataagaaaattgg-ttttattatatgtcctttggcttaaagt--cagtttctaagaacctattaatgatcttaagtgaggactt------tctgTAAATG----------------TCTGTTGTTTAATCCACTGCATCTGGGTGTCAGTGGAGACAACAAGAGGAAGTGGAATTTCACATC-ATCTGGCAGTTTTGG-------GTTACatatttaagtcaatagattctgagtgaagcacattgcccttcataacgtgggttcccttcattcaatcagttgaaggcctgactggcataagagggaactctccatcagactgccttcagactccatctgcagccctggctcttcctggtcccacagcagactgcctttggactcagactgcaactctgtccccagtctcctccactgctggcctcctccaccagagtttggactcagtaagcttccacaatcatgtgagcaaattctttaaaagacatatctttctatatatacatatattattggtacaattgctctggagcaccc-taatacaGatcccaagggcattattctgagtacaaaatga--gtctcagaaggtcacatatagtacaattctatttatataacattttctgaatgacaaaattatacagatgaaaaccaaattagtggttggcacagggtagggttggtggggggtggtgggggaatggtgttacccttaaggggggtgagtggcatgaggaagatctttgtggtgatggaatatagttct
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15324060 731 -  18854210 --------------------------------------------------------------------tgataaaattg--ttttgtcatatagcattttgcttaaagtcacagtttccaagaaccaatcaatgatgttaagtgaggactAAATGTCTCTCTAAACATTGAAGCAACTGATATTCCTTTGTTTAATCTCTTCAGTCtg-gtgtcaatggagccaagtagagtatctggaatatcacatctatctggcagCTTTGGG----AAATTac--atttaaattggtagattttgagtgaggcaaattgtcctccatgacacgggtatgcctcgttcaatcagctggtggcctgaatcacacaagcaggacttctccatcagacacct-tcagact-tgtctgaatcatcagctcgtgctggttccacagcaggttgcctgcggactcacactgcagctttgt-cccatcttc--ccactgctggcttcctccatcagagtctga----tggaagcttccatagtcatgtgagcaaattatttaaaataactctttttctatacatacacatcctattggttctgtttctctggagcacac-taatacaGaccccaaaggcaatacactgagcacaaaaaactaatctcaaaaactcatatgcagtatgattccatttatataacgtttttagaagaacaaaattatacagatgata---aaattagtggttggcacaggttagggatggtggagg---ttgggagatgggtgtgata--taaagaggcagcgt----------agatc-ctgtggtaatggtgtggagtcct
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       59568   0 -    115496 C
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1       94098 6018 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138471338   0 + 170955103 C
e rheMac8.chr4             139311029   0 - 172585720 C
e macNem1.NW_012013344v1      187562   0 +    407600 C
e chlSab2.chr17             39638139   0 +  71996105 C
e cerAty1.NW_012003702v1       59937   0 +    463628 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1081499.000000
s hg38.chr6_KI270758v1_alt     26474 279 +     76752 gtattttgatcacagtggtggttacatgaatc--tacacatgtgata-aagtagaaaactg--caaatacattgtatcagtgtcgatttccttgtttcgatattgtgctatagttatgtatgatgtaaccattgggggaaactgggtgaagggtacaagggacctctctgtactattttcatcaactcctgtgaatgtataattattttgaaattaaca--tttaaAAATCATAAAGCATATTATCTAA-TTTTTTCTCTCAAACTTTAAACAAATCAATGTTTACC
s panTro5.chr6             142726239 274 - 175400573 gtattttgatca---tggtggttacatgaatc--tacac--gtgata-aagtagaaaactg--caaacacattgtatcagtgtcgatttcctggtttcaatattatgctacagttatgtatgatgtaaccattgggggaaactgggtgaagggtacaagggacctctctgtactatttgcatcatctcctgtgaatgtataattattttgaaattaaca--tttaaaaaTCATAAAGCATATTATCTAA-TTTTTTCTCTCAAACTTTAAACAAATCAATGTTTACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140877820 274 - 173848474 gtattttgatca---tggtggttacatgaatc--tacac--gtgata-aagtagaaaactg--caaacacattgtatcagtgtcgatttcctggtttcaatattatgctacagttatgtatgatgtaaccattgggggaaactgggtgaagggtacaagggacctctctgtactatttgcatcatctcctgtgaatgtataattattttgaaattaaca--tttaaaaaTCATAAAGCATATTATCTAA-TTTTTTCTCTCAAACTTTAAACAAATCAATGTTTACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2395588 274 +   2807050 gtattctgatca---tggtggttacatgaatc--tacac--gtgata-aagtagaaaactg--caaacacattgtatcagtgtcgatttcctggtttcaatattatgctatagttatgtatgatgtaaccattgggggaaactgggtgaagggtacaagggacctctctgtactatttgcatcatctcctgtgaatgtataattattttgaaattaaca--tttaaaaaTCATAAAGCATATTATCTAA-TTTTTTCTCTCAAACTTTAAACAAATCAATGTTTACC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45688520 280 - 122973662 gtattttgatcacagtggtggttacatgaatc--tacacatgtgata-aagtagaaaactg--caaacacattgtatcagtatcgatttcctggtttcgatattgtgctatagttatgtatgatgtaaccattgggggaaactgggtgaagggtacaagggacctctctgtactattttcatcatctcctgtgaatgtataattattttgaaattaaca--tttaaaaaTCGTAAAGCATATTATCTAATTTTTTTCTCTCAAACTTTAAACAAATCAATGTTTACC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138633341 279 - 171630274 gtgttttgatcacagtggtagtttcgtgaatctatacat--gtgata-aagtagaaaactg--tgaacacattgtatcagtgtcaatttcctgattttaatattgaactatagttatgtgtgatgtaaccattgggggaaactgggtgaagggtacaagagactgctctggactattttcaccatctcctgtgaatgtataattattttgagattaaca--gttAGAAATTATAATACATATTATCTAA-TTTTTTCTCTCAAACTTTAAACAAATCAATATTTACC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            190052 276 +   1154217 gtattttgatcacagtggtagttacatgaatc--tacat--gtgata-aagtagaaaactg--taaacacattgtatcagtgttgatttcctgattttaatattgagctatagttatgtatggtataaccattgggggaaactgggtgaagggtacaagagactgctctggactattttcaccatctcctgtgaatgtataattattttgagattaaca--gtta-aaattataaTACATATTATCTAA-TTTTTTCTCTCAAACTTTAAACAAATCAATGTTTACC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14016328 279 +  15232693 aaattttgatcacagtggtatttacatgaatctacacgt--gtgata-aagtagaaaactg--taaacacattgtatcagtgttgatttcctgattttaatactgagctatagttacgtatggtgtaaccattgggggaaactgggtgaagggtacaagaagccactctgtggtattttcaccatctcctgtgaatgtataattattttgagattaaca--gttaaaAATTACAATACATATTATCTAA-TTTTTTCTCTCAAACTTTAAACAAATCAATGTTTACC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      259126 276 +    446445 gtgttttgatcacggtggtagttacatgaatc--tacat--gtgata-aagtagaaaacta--taaacacattgtatcagtgtcgatttcctgattttaatattgagctgtagttatgtatgatgtaaccattgggggaaactgggtgaagggtacaagagactgctctggactattttcaccatatcctgtgaatgcataattattttgagattaaca--gttaaaAATTATAATACATATTATCTAA--TTTTTCTCTCAAACTTTAAACAAATCAATGTTTACC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      100116 281 +   1371726 GTATTTTGATCACCATGGTGGGTACATGAAGC--CACACAGGTGATATGAATAGAAAACTGTACAACCATGttgtatcaatgtcagtttcctggttttgatatcattgtatagttatatgcaatgtaaccattagggg-aagcgggtgaaaggtacaaggaac--ctctgtattatcttcacaatttcctgtgaatgtataattatttcaaaatttaaattttaaaaaaTTATGATGCATATTATCTAA-TTTTTTCTCTCAAATTTTGAACAAATTAATGATTACC
i proCoq1.NW_012150019v1   I 6018 I 625
s otoGar3.GL873550          15324791 277 -  18854210 ggattttgaacacaatggtggctacatgaatt--tacatatatgata-aagtAGAGGGCTATACAAACCTGttgtgtcaatgtccgtttcctgggcttgatgttgttgtgtagttatatataatgtaaccactagggg-aactgggtggggggtacaagggaccgctctgtactattttcacaatatcctgggactatataattatttcaaaatttaaa--ttaaaaaaTCATGGTGCCTATTATC----TTTTTTCTCTCAAATTTTGAACAAATTAATGTTTACC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       59568   0 -    115496 C
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138471338   0 + 170955103 C
e rheMac8.chr4             139311029   0 - 172585720 C
e macNem1.NW_012013344v1      187562   0 +    407600 C
e chlSab2.chr17             39638139   0 +  71996105 C
e cerAty1.NW_012003702v1       59937   0 +    463628 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1551397.000000
s hg38.chr6_KI270758v1_alt     26753 502 +     76752 ----TTGTAAAT-CTTCTCTGCACTCCCAACAACATTGGATATTCTTTATTTGTAAT-T--TTTTTTAAACTACAGACACA-cctgacttaagatggtttgacttaggattttttgacttttcaatggtgtaaaagcaatatccattctgtataaaccatactttaaattttgatcttattccagaccagcgatactcagtaagatactctttcacaatgccag----------------gcagcc-----tcagccacatgatcatgaaggtgaacaacttatactctacactttcaactcacaatattttcaatttacaat--ggatttattgg----gagttaaccccatcataagttgaagagcatctgTATTACATTTAAAAAC---CCAGGTTATTT----------------------------------------TAAAATAGTTGCTTATATTTACATACTTACAAGATTATTCAGTCTAGCCCAGATTTACAAGGGGGAa-----aaaacacactcaaggtattttaagcccagagagatgtaatacagtgaagtgcattgcaaaagttttg-taag
s panTro5.chr6             142726513 504 - 175400573 ----TTGTAAAT-CTTCTCTGCACTCCCAACAACATTGGATATTCTTTATTTGTAAT-T-CTTTTTTAAACTACAGACACA-cctgacttaagatggtttgacttaggattttttgacttttcaatggtgtaaaagcaatatccattctgtataaaccatactttaaattttgatcttattccagaccagcgatcctcagtaagatactctttcacaatgccag----------------gcagcc-----tcagccacataatcatgaaggtgaacaacttatactctacactttcaactcgcagtattttcaatttacaat--ggatttattgg----gagttaaccccatcataagttgaacagcatctgTATTACATTTAAAAAC---CCAGGTTATTT----------------------------------------TAAAATAGTTGCTTATATTTACATACTTACAAGATTATTCAGTCTAGCCCAGATTTACAaggggaaa-----gaaacacactcaaggtattttaagcccagagagatgtaatacagtgaagtgcattgcaaaagttttgttaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140878094 502 - 173848474 ----TTGTAAAT-CTTCTCTGCACTCCCAACAACATTGGATATTCTTTATTTGTAAT-T-CTTTTTTAAACTACAGACACA-cctgacttaagatggtttgacttaggattttttgacttttcaatggtgtaaaagcaatatccattctgtataaaccatactttaaattttgatcttattccagaccagcgatcctcagtaagatactctttcacaatgccag----------------gcagcc-----tcagccacataatcatgaaggtgaacaacttatactctacactttcaactcgcagtattttcaatttacaat--ggatttattgg----gagttaaccccatcataagttgaacagcatctgTATTACATTTAAAAAC---CCAGGTTATTT----------------------------------------TAAAATAGTTGCTTATGTTTACATACTTACAAGATTATTCAGTCTAGCCCAGATTTACAAGGgg-aa-----aaaacacactcaaggtattttaagcccagagagatgtaatacagtgaagtgcattgcaaaagttttg-taag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2395862 505 +   2807050 ----TTGTAAAT-CTTCTCTGCACTCCCAACAACATTGGATATTCTTTATTTGTCAT-TTTTTTTTTAAACTACAGACACA-cctgacttaagatggtttgacttaggattttttgacttttcaatggtgtaaaagcaatatccattctgtataaaccatactttaaattttgatcttattccagaccagcgatactcagtaagatactctttcacaatgccag----------------gcagcc-----tcagccacatgatcatgaaggtgaacaacttatactctacactttcaactcgcagtattttcaatttacaat--ggatttattgg----gagttaaccccatcataagttgaacagcatctgTATTACATTTAAAAAC---CCAGGTTATTT----------------------------------------TAAAATAGTTGCTTATATTTACATACTTACAAGATTATTCAGTCTAGCCCAGATTTACAAGGGGGAa-----gaaacacactcaaggtattttaagcccagagagatgtaatacagtgaagtgcattgcaaaagttttgttaag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45688800 502 - 122973662 ----TTGTAAAT-CTTCTCTGCACTCCCAACAACACTGGATATTCTTTATTTGTAAT-T-TTTTTTTAAACTACAGACACA-cctgccttaagatggtttgacttagga-tttttgacttttcaatggtataaaagcaatatccattctatataaaccatactttaaattttgatcttattccagaccagcaatacttagtacgatactctttcacaatgccag----------------gcagcc-----tcagccacatgatcatgaaggtgaacaatttatactctacactttcaactcacagtattttcaatttacaat--ggatttattgg----gagctaaccccatcataagttgaagagcatctgTATTACATTTAAAAAC---CCAGGTTATTT----------------------------------------TAAAAAGGTTCCTTATATTTACATACTTACAAGATTATCCAGTCTAGTCCATATTTACAAGGGggaa-----aaaacacactcaaggtattttaagcccagagacatgtaatacagtgaagtgcattgcaaaagttttg-taag
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138633620 501 - 171630274 ----TTGTAAATGTTTCTCTGCACTCCCAACAACATTGGATATTCTTTATTTGCAGA-T-TTTTTTAAAACTACAGACACA--CTGAC--AAgatagttcgacttagga-tttccagctttgcaatggtgcaaaagcaatattcattctgtataaatcatactttgaattttgaccttattccggaccagcggtattcagtaagctactctttcacgatgccaa----------------gcagcc-----tcggccacacaaccacgaagttaaacaactcttactttacactttcaactcacaatattttcaatttacaat--ggatttattgg----aagctaaccccatcataagatgaagagcctccgTATTACATTTAAAAAT---CCAGGTTATTT----------------------------------------TAAAATAGTTGCTTATATTTATGTATTTACAAGATTATTCAGTCTAGCCCAGATCTACAAGGGGGAA----GAAAACACACTCAAGGTATTTTAAGCCCAGAGAGATGTAATACAGTGAAGTGAACTGCAAAAGTTTTG-TAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            190328 499 +   1154217 ----TTGTAAATGTTTCTCTGCACTCCCAACAACATTGGATATTCTTTATTTGTAGA-T-TTTTTTAAAACTACAGACACA-cctgac--aagacagttcgacttagga-tttctgacttttcaatggtgcaaaagctatattcattctgtataaaccatactttgaattttgatcttattccagaccagcgatattcagtaagctactctttcacaatgccag----------------gcagcc-----ttggccacacaaccatgaagttaaacaactcttactttacactttcaactcacactattttcaacttacagt--ggatttattgg----gagctaaccccatcataagctgaagaacatctgTATTACGTTTTAAAAT---CTGGGTTATTT----------------------------------------TAAAATAGTTGCTTATATTTACGTATTTACAAGATTATTCAGTCTAACCCAGATCTACACAGGGGAA----GAAAACACATTCAAGGTA---TAAGCCCAGAGAGATGTAATACAGTGAAGTGAACTACAAAAGTTTTG-TAAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14016607 499 +  15232693 ----TTGTAAATGTTTCTCTGCACTCC---CAACATCGGATATTCTTTATTTGTAGA-T-TTTTTTAAAACTACAGACACA-cctgac--aagatagttcgacttagga-tttctgacttttcaatggtgcaaaagtaatattcattctgtataaaccatactttgaattttgatcttattccagaccaacaatattcagtaagctactctttcacaatgccag----------------gcagcc-----ccggccacacaaccatgaagctaaacaactcttactttacactttcaactcacaatattttcaattcacaat--ggatttattgg----gagccaaccccatcataagctgaagagcatccgTATTACATTTCAAAAT---CTGGGTTATTT----------------------------------------TAAAATAGTTGCTTATATTTATGTATTTACAAGATTATTCAAACTAGCCCAGATCTACACAGGGGAA----GAAAATATATTCAAAGTATTTTAAGCCCGGAGAGATGTAATACAGTGAAGTGAACTGTAAAAGTTTTG-TGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      259402 502 +    446445 ----TTGTAAATGTTTCTCTGCGCTCCCAACGACATTGGATATTCTTTATTTGTAGATT-TTTTTTAAAACTACAGACACA--CTGAC--AAgatagttcgacttagga-tttctgacttttcaatggtgcaaaagcaatattcattctgtataaatcatactttgaattttgatcttattccagaccagcgatattcagtaagctactctttcacgatgccag----------------gcagcc-----tcggccacacaaccgtgaagttaaacaactcttactttacactttcaactcacaatattttcaatttacagt--ggatttattgg----gagctaatgccatcataagctgaagagcctccgTATTACATTTAAAAAT---CCGGGTTATTT----------------------------------------TAAAATAGTTGCTTATATTTATGTATTTACAAGATTATTCAGTCTAGCCCAGATCTACAAGGGGGaa----gaaaacacactcaaagtattttaagcccagagagatgtaatatagtgaagtgaactgcaaaagttttg-taag
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15325068 552 -  18854210 TAAGTAGTAAATGTTTCTCTGCACTCCCAACAGCACTGAATAGCTTTT-----TAGA-C-TTTTTTTCAG-TACAGACAGGTCTTTacttatgatggctcaacttagaa-------------------tgggaaagtggtgtgtattctgtagaaaccatacttt-aattttgatcttatcctgggccaccaacatgcagtacaaaactgtgtggtgatgcctgtgagtggccgcaagttgcagctctcagtcagccacacgaccatgagggcaaataaaaaatactctacattttcatttatgatgggtttaaacccaccattgggttttacaggtttatacataatctcatagtaagttaaggaacatctgTATTCCA--TAAAAACGTTCCGGGTCATTTAAAATCACTTGCCTTCCAATTAATGGTGTCCAGCTTAAACAAAATTACTTGCTTATTTTTGTGTGCTTATATGATT---CTGTCTGGCCGAGATTTACAAGAATAAAAAAAAAAAAAACACTCAAGGTATTTGAAGCCCAGAGAGATG-ACTACAGTAAAGTGGATTGCAAAAGTTATA-CAAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       59568   0 -    115496 C
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      100397 625 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138471338   0 + 170955103 C
e rheMac8.chr4             139311029   0 - 172585720 C
e macNem1.NW_012013344v1      187562   0 +    407600 C
e chlSab2.chr17             39638139   0 +  71996105 C
e cerAty1.NW_012003702v1       59937   0 +    463628 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=738079.000000
s hg38.chr6_KI270758v1_alt     27255 83 +     76752 gacagaaaaagcAAAATTGTGCTTCCAAAGGTCAGGAACTGCAGGAAGCTACTATTGGCCCT--GCAGCACTAAACAAACCCACA
s panTro5.chr6             142727017 76 - 175400573 gacagaaaaagcaaaattgtgcttc-------caggaaCTGCAGGAAGCTACTATTGGCCCT--GCAGCACTAAACaaacccaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140878596 83 - 173848474 gacagaaaaagcaaaattgtgcttccaaaggtcaggaactgcaggaaGCTACTATTGGCCCT--GCAGCACTAAACaaacccaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2396367 83 +   2807050 gacagaaaaagcaaaattgtgcttccaaaggtcaggaactgcaggaagctactattggccct--GCAGCACTAAACaaacccaca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45689302 83 - 122973662 gacagaaaaagcaaaattgtgcttccaaagatcaggaactgcaggaaGCTACTATTGGCCCT--GCAGCACTAAACAGACCCACA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139311029 85 - 172585720 GACAGAAAAACCAAAATTGTGCTTCCAAAGATCAGGAACTACAGGAAGCTACTACTGGCATTAAATAGTACTAAACAGACCCACA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138471338 85 + 170955103 GACAGAAAAACCAAAATTGTGCTTCCAAAGATCAGGAACTACAGGAAGCTACTATTGGCATTAAATAGCACTAAACAGACCCACA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      187562 85 +    407600 GACAGAAAAAGCAAAATTGTGCTTCCAAAGATCAGGAACTACAGGAAGCTACTATTGGCATTAAATAGCACTAAACAGACCCACA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       59937 85 +    463628 GACAGAAAAAGCAAAATTGTGCTTCCAAAGATCAGGAACTACAGGAAGCTACTACTGGCATTAAATAGTACTAAACAGACCCACA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39638139 85 +  71996105 GACAGAAAAAGCAAAATTGTGCTTCCAAAGATCAGGAACTACAGGAAGCTACTACTGGCATTAAATAGTACTAAACAGACCCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       59568 85 -    115496 GACAGAAAAAACAAAATTGTGCTTCCAAAGATCAGGAACTACAGGAAGCTACTATTGGCATTAAATAGTACTAAACAGACCCACA
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138634121 83 - 171630274 GACAGAAAAAGCAAAATTGTGCTTCCAGAGGTCAGGCACTGCAGGAGGCTACTATTGGCCCT--GCAGCGGGGAACAGACCCACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            190827 83 +   1154217 GACGGAAAAAGCAAAATTGTGCTTCCAGAGGTCAGGCACTGCAGGAAGCTACTATTGGCCCT--GCAGCAGTAAGCAGACCCACA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14017106 83 +  15232693 GACAGAAAAAGCAAAATTGTGCTTCCAGAGGTCAGGCACTGCAGGAAGCTACTCTTGGCCCT--GCAGCAGTAAGCAGACCCACA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      259904 83 +    446445 gacagaaaaagcaaaattgtgcttccagaggtcaggcactgcaggaagcctctgttgcccct--GCAGCAGTAAACAGACCCACA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15325620 83 -  18854210 GACAGAAACTGAGAAATTGTGCTTCCAGGTGTCAGGTACTGCAGGAAGCTCCCCTTGGCCCT--GTAGTAGTCAATAGACCCACG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      100397 625 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=424341.000000
s hg38.chr6_KI270758v1_alt     27338 35 +     76752 CTCCTGGCAGCTGCTGCTACTTGCTGTCAGAAGCA
s panTro5.chr6             142727093 35 - 175400573 ctcctggcagctgctgctacttgctgtcagaagca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140878679 35 - 173848474 ctcctggcagctgctgctacttgctgtcagaagca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2396450 35 +   2807050 ctcctggcagctgctgctacttgctgtcagaagca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45689385 35 - 122973662 CTCCTGGCAGCTGCTGCTGCTTGCTGTCAGAAGCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139311114 35 - 172585720 CTCCTAGCAGCTGCTGCTACTTGCTGTCAGAAGCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138471423 35 + 170955103 CTCCTAGCAGCTGCTGCTACTTGCTGTCAGAAGCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      187647 35 +    407600 CTCCTAGCAGCTGCTGCTACTTGCTGTCAGAAGCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       60022 35 +    463628 CTCCTAGCAGCTGCTGCTACTTGCTGTCAGAAGCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39638224 35 +  71996105 CTCCTAGCAGCTGCTGCTACTTGCTGTCAGAAGCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       59653 35 -    115496 CTCCTAGCAGCTGCTGCTACTTGCTGTCAGAAGCA
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138634204 35 - 171630274 CTCCCGGCAGCTGCTGCCACTTGCTGTCAGAAGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            190910 35 +   1154217 CTCCTGGCAGCTGCTGCTACTTGCTGTCAGAAGCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14017189 35 +  15232693 CTCCTGGCAGCTGCTGCTATTTGCTGTCAGAAGCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      259987 35 +    446445 CTCCTGGCAGCTGCTGCTACTTGCTGTCAGAAGCA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      101022 35 +   1371726 CTCCTGGCGGCTGCTGCCACTTGCTGTCAGAAGCA
i proCoq1.NW_012150019v1   I 625 I 97
s otoGar3.GL873550          15325703 35 -  18854210 CTCCTGGCGGCTGCTGTTACTTGCTTTTAGAAGGA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1091221.000000
s hg38.chr6_KI270758v1_alt     27373 123 +     76752 GAATGACAGCAATTTT-CCACTGCCTTCTAATCGCAAGTGAGTGCCTTCCTAAGAAAGGGACTCTGGAAGAAGTGGTGTCCAGGCTTCAACCCCAAGTGATGTGGAAAAA-AGCACAAAACAGGG
s panTro5.chr6             142727128 123 - 175400573 gaatgacagcactttt-ccactgccttccaatcgcaagtgagtgccttcgtaagaaagggactctggaagaagtggtgtccaggcttcaaccccaagtgatacagaaaaa-agcacaaaataggg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140878714 123 - 173848474 gaatgacagcactttt-ccactgccttccaatcgcaagtgagtgccttcgtaagaaagggactctggaagaagtggtgtccaggcttcaaccccaagtgatacagaaaaa-agcacaaaataggg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2396485 121 +   2807050 gaatgacagcactttt-ccactgccttccaatcgcaagtgagtgcctttgtaagaaagggactctggaagaagtggtgtccaggcttcaaccccaagtgatacggaaaaa-agcacaaaac--gg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45689420 123 - 122973662 GAATGACAGCAATTTT-CCACTGCCTTCTAATCACAATTGAGTGCCTTCCTAAGAaagggactctggaagaagtggtgtccaggcttcaaccccaagtgatacggaaaaa-agcacaaaacaggg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139311149 123 - 172585720 GAATGACAGCAATTTT-CCACTCTCTTCTAATTGCAAGTGAGTGTCTTCCTAAGAAAGGGACCCTAGAAGAAGTGGTGTCCAGGCTTCAACCCCAAGTGATATGGAAAAA-AGCACAAAACAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138471458 123 + 170955103 GAATGACAGCAATTCT-CCACTCTCTTCTAATTGCAAGTGAGTGTCTTCCTAAGAAAGGGACCCTAGAAGAAGTGGTGTCCAGGCTTCAACCCCAAGTGATATGGAAAAA-AGCACAAAACAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      187682 123 +    407600 GAATGACAGCAATTTT-CCACTCTCTTCTAATTGCAAGTGAGTGTCTTCCTAAGAAAGGGACCCTAGAAGAAGTGGTGTCCAGGCTTCAACCCCAAGTGATATGGAAAAA-AGCACAAAACAGGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       60057 123 +    463628 GAATGACAACAATTTT-CCACTCTCTTCTAATTGCAAGTGAGTGTCTTCCTAAGAAAGGGACCCTAGAAGAAGTGGTGTCCAGGCTTCAACCCCAAGTGATATGGAAAAA-AGCACAAAACAGGG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39638259 123 +  71996105 GAATGACAGCAATTTT-CCACTCTCTTCTAATTGCAAGTGAGGGTATTCCTAAGAAAGGGACCCTAAAAGAAGTGGTGTCCAGGCTTCAACCCCAAGTGATATGGAAAAA-AGCACAAAACAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       59688 123 -    115496 AAGTGACAGCAATTTT-CCACTCTCTTCTAATTGCAAGTGAGTGTCTTCCTAAGAAAGGTACCCTAGAAGAAGTGGTGTCCAGGCTTCAACCCCAAGTGATATGGAAAAA-AGCACAAAACAGGG
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138634239 119 - 171630274 GAATGGCAGCGATTTT-CCACTGCCTTCTAATCGCGAGTGAGTG----CCTAAGAaagggactctggaagaagcggtgtccaggcttcaacctcaagtgatatagaaaag-agcacaaaacagaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            190945 117 +   1154217 GAATGGCAGCGGTTTT-CCACTGCCTTCTAATCGCAAGTGAGTG----CCTAAGAaagggactctggaagaagtggtgtccaggcttcgacaccaagtgatatggaaaag-agcacaaaacag--
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14017224 119 +  15232693 GAATGGCAGCGATTTT-CCGTTGCCTTCTAATCACAAGTGAGTG----CCTAAGAaagggactctggaagaagtggtgtccaggcttcaaccccaagtgatatggaaaag-agcacaaaacagag
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      260022 119 +    446445 GAATGGCAGCGATTTT-CCACTGCCTTCTAATCGCAAGTTAGTG----CCTAAGAaagggactctggaagaagtggtgtccaggcttcaaccccaagtgatgtggagaag-agcataaaacagag
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15325738 124 -  18854210 AACTGGCAGCTATTTTACCTCTGCTTTATAACTGCGAGTAAATGCCTCTCATAGCAAGGGGCTCTGGAAAACACGCTGTCCAGGCTTCAGCCTCACATGATACAGAAAAAGAGCACAAAAAAGA-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101057  97 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=800404.000000
s hg38.chr6_KI270758v1_alt     27496 84 +     76752 GGAAATTGATTTAGTACCAACAGACAATATCTCCAACTTAAAATATCTTGAATATTTATTCCTGAATATATTAC------CCCTTTCTAA
s panTro5.chr6             142727251 84 - 175400573 gaaaattgatttagtaccaacagacaatATCTCCAACTTAAAATATCTTGAATATTTATTCCTGGATATATTAC------CCCTTTCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140878837 84 - 173848474 gaaaattgatttagtaccaacagacaatATCTCCAACTTAAAATATCTTGAATATTTATTCCTGAATATATTAC------CCCTTTCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2396606 84 +   2807050 gaaaattgatttagtaccaacagacaatATCTCCAACTTAAAATATCTTGAATATTTATTCCTGAATATATTAC------CCCTTTCTAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45689543 84 - 122973662 gaaaattgatttagtaccaacagacagtATCTCCAACTTAAAATATCTTGAATATTTATTCCTGAATATATTAC------CCCTTTTTAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139311272 81 - 172585720 GAAAA---ATTTAGCACCAACAGACAGTATCTCCAACTTAAAATATCTTGAATATTTATTCCTGAATATATTAC------CCTTTTCTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138471581 80 + 170955103 GAAA----AATTAGTACCAACAGACAGTATCTCCAACTTAAAATATCTTGAATATTTATTCCTGAATATATTAC------CCTTTTCTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      187805 84 +    407600 GAAAATTGATTTAGCACCAACAGACAGTATCTCCAACTTAAAATATCTTGAATATTTATTCCTGAATATATTAC------CCTTTTCTAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       60180 84 +    463628 GAAAATTGATTTAGTACCAACAGACAGTATCTCCAACTTAAAATATCTTGAATATTTATTCCTGAATATATTAC------CCTTTTCTAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39638382 83 +  71996105 GAAAATTGATTTAGTACCAACAGACAGTATCTCCAACTTAAAATTTC-GGAATATTTATTCCTGAATATATTAC------CCTTTTCTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       59811 84 -    115496 GAAAATTGGTTTAGTACCAACAGACAGTATCTCCAACTTAAAATATCTTGAATATTTATTCCTGAATATATTAC------TCTTTTCTAG
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138634358 84 - 171630274 gaagactgacttagtaccaacagacaatATTTCCAACTTCAAATATATTGAATATTTATTCCAGAATATATTAC------CCTTTTCTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            191062 82 +   1154217 gaaaattggcttactaccaacagacaatA-TTCCGACTTAAAATATATGGAATATTTATTCCAGAATATATTAC------CCTTTTCTA-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14017343 83 +  15232693 gaaaattgacctagtaccaacagacaatA-TTCCAACTTAAAATATATTGAATATTTATTCCAGAATATATTAC------CCTTTTCTAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      260141 84 +    446445 gaaaattgacttagtaccaacagacaatATTTCCAACTTAAAATATATTGAATATTTATTCCAGAATATATTAC------CCTTTTCTAA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      101154 83 +   1371726 GGAAATGGATTTAGTGTCAAAA-GACATATCTCCAACTTGAAATTTCTTGAATATTTATTCATAAATATATTAC------CCTTTTCTAA
i proCoq1.NW_012150019v1   I 97 I 158
s otoGar3.GL873550          15325862 89 -  18854210 GGAAATGGATTTAGTAACAAAAGGAAGTATCTGCAACCTCAAATTTCCTGACTAGTTATTTGCAAATATATCACGTAATGCCTCCTTTA-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1202688.000000
s hg38.chr6_KI270758v1_alt     27580 137 +     76752 TATCTCTCTTTGCATTCTCCTTATTTGTACTTACATATATATTTGATGAATTTTTAGCA-TTTTTAGTAATTTACTAAATCTATACTTAATAGAAATATTAAACC------------TAATATAATGTATAGCATTATCCGATATAGAAG
s panTro5.chr6             142727335 135 - 175400573 TATCTCTC--TGCATTTTCCTTATTTGCACTTACATATATATTTGATGAATTTTTAGCA-TTTTTAGTAATTTACTAAATCTATATTCAATAGAAATATTAAACC------------TAATATAATGTATAGCATTATCCGATATAGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140878921 135 - 173848474 TATCTCTC--TGCATTTTCCTTATTTGCACTTACATATATATTTGATGAATTTTTAGCA-TTTTTAGTAATTTACTAAATCTATATTCAATAGAAATATTAAACC------------TAATATAATGTATAGCATTATCCGATATAGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2396690 135 +   2807050 TATCTCTC--TGCATTTTCCTTATTTGCACTTACATATATATTTGATGAATTTTTAGCA-TTTTTAGTAATTTACTAAATCTATATTCAATAGAAATATTAAACC------------TAATATAATGTATAGCATTATCCGATATAGAAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45689627 137 - 122973662 TATCTCTCTTTGCATTTTCCTTATTTGTACTTACATATATATTTGATGAATTTTTAGCA-TTTTTAGTAATTTACTAAATCTATATTCAATAGAAATATTAAACC------------TAATATAATGTATAGCATTATccgatatagaag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139311353 138 - 172585720 TATCTCTGTTTACATTTTCCTTATTTGTGTTTACATATCTATTTGATGAATTTTTAGCATTTTTCAGTAATTTACTAAATCTATATTCAATAGAAATATCAAACC------------TAATATAATGTATGACATTATCAGATATAGAAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138471661 137 + 170955103 TATCTCTGTTTACATTTTCCTTATTTGTGTTTACATATCTATTTGATGAATTTTTAGCA-TTTTCAGTAATTTACTAAATCTATATTCAATAGAAATATCAAACC------------TAATATAATGTATGATATTATCAGATATAGAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      187889 138 +    407600 TATCTCTGTTTACATTTTCCTTATTTGTGTTTACATATCTATTTGATGAATTTTTAGCATTTTTCAGTAATTTACTAAATCTATATTCAATAGAAATATCAAACC------------TAATATAATGTATGACATTATCAGATATAGAAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       60264 137 +    463628 TATCTCTGTTTACATTTTCCTTATTTGTGTTTACATATATATTTAATGAATTTTTAGCA-TTTTCAGTAATTTACTAAATCTATATTCAATAGAAATATCAAACC------------TAATATAATGTATGACATTATCAGATATAGAAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39638465 137 +  71996105 TATCTCTGTTTACATTTTCCTTATTTGTGTTTACATATATATTTGATGAATTTTTAGCATTTTT-AGTAATTTACTAAATCTATATTCAATAGAAATATCAAACC------------TAATATAATGTATGACATTATCAGATATAGAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       59895 138 -    115496 TATCTCTGTTTACATTTTCCTTATTTGTGTTTACATATCTATTTGATGAATTTTTAGCATTTTTCAGTAATTTACTAAATCTATATTCAATAGAAATATCAAACC------------TAATATAATGTATGACATTATCAGATATAGAAG
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138634442 137 - 171630274 TATCTCTCTTTACATTTTCTTTATTTGTGCTTACATATATATTTGATGAATTTTTAGGA-ATTTTAGTAATTTAGTAAATCTATATTCTATAGAAATATTAAACC------------TAATATAATGTATAACATTATCAGATATAGAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            191144 134 +   1154217 -ATCTCTCTTTACATTTTCTTTATTTGTGCTTACATATATGTTTGATGAATTTTTAGCA-ATTTTAGTAATTTACTAAATCTGTATTCAATAGAAATATTAAACC------------TAATATAATGTGTAAC--TATCAGGTATAGAAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14017426 135 +  15232693 TATCTCTCTTTACATTTTCTTTATTTGTGCTTACATATATGTTTGATGAATTTTTAGCA-ATTTTAGTAATTTACTAAATCTatattcgatagaaatattaaacc------------taatataatgtgtaac--tatcagatatagaag
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      260225 137 +    446445 TATCTCTCTTTACATTTTCTTTATTTGTGCTTACATATATATTTGATGAATTTTTAGCA-ATTTTAGTAATTTACTAAATCTGTATTCAATAGAAATATTAAACC------------TAATATAATGTATAACATTATCAGATATAGAAG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15325951 146 -  18854210 TATATTTCCTAATTTTTGCTTTGTTTATAC--ATATATAAAATCGATAAAAGTTTGTCA-ATTTTAGTAGCTTACTGACTCTATATTCAATGGGGATATTAATCCTTTTTATATTAATTACATTAGGTATAACATTATCTGATATATAA-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101237 158 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=478984.000000
s hg38.chr6_KI270758v1_alt     27717 46 +     76752 ATCTTAAATGTCATTAATTAAATGTTAGCCTCTTGGATTTTAATTT
s panTro5.chr6             142727470 46 - 175400573 ATCTTAAATGGCATTAATTAAATGTTAGCCTTTTGGGTTTTAATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879056 46 - 173848474 ATCTTAAATGGCATTAATTAAATGTTAGCTTCTTGGGTTTTAATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2396825 46 +   2807050 ATCTTAAATGGCATTAATTAAATGTTAGCCTCTTGGGTTTTAATTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45689764 46 - 122973662 atcttaagtgtcattaattaaatgttagcctcttgggttttaattt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139311491 45 - 172585720 ATCTTAA-TGCCATTAATTAAATGTTAGCCTCTTGGGTTTTAATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138471798 45 + 170955103 ATCTTAA-TGCCATTAATTAAATGTTAGCCTCTTGGGTTTTAATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      188027 45 +    407600 ATCTTAA-TGCCATTAATTAAATGTTAGCCTCTTGGGTTTTAATTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       60401 45 +    463628 ATCTTAA-TGCCATTAATTAAATGTTAGCCTCTTGGGTTTTAATTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39638602 45 +  71996105 ATCTTAA-TGCCATTAATTAAATGTTAGCCTCTTGGGTTTTAATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       60033 45 -    115496 ATCTTAA-TGCCATTAATTAAATGTTAGCCTCTTGGGTTTTAATTT
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138634579 46 - 171630274 ATCTTAAATGTTATTAATTAAATGTTAGCCTCTTGGGTTTTAATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            191278 46 +   1154217 ATCTTAAATGTTATTAGTTAAATGTTAGCCTCTTGGGTTTTAATTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14017561 46 +  15232693 atcttaaatgttattaattaaatgttaGCCTCTTGGGTTTTGATTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      260362 46 +    446445 ATCTTAAATGTTATCAATTAAATGTTAGCCTCTTGGATTTTAATTT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      101395 46 +   1371726 ATCTTAAATGTTATTAATCAAATATTAGCCTCTTGAGTTTTAATTT
i proCoq1.NW_012150019v1   I 158 C 0
s otoGar3.GL873550          15326097 46 -  18854210 ACCTTAATCGTTATTAGATAAATATTAGCCTCTTGAGttttttctt
i otoGar3.GL873550         C 0 I 306
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=458797.000000
s hg38.chr6_KI270758v1_alt     27763 46 +     76752 ATATAAAGCTTAATAAtgtgaaaatacatgaagatcaaccaaatga
s panTro5.chr6             142727516 46 - 175400573 ATATAAAGCTTAATAAtgtgaaaacacatgaagatcaaccaaatga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879102 46 - 173848474 ATATAAAGCTTAATAAtgtgaaaatacatgaagatcaaccaaatga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2396871 46 +   2807050 ATATAAAGCTTAATAAtgtgaaaatacatgaagatcaaccaaatga
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45689810 46 - 122973662 atataaagcttaataatgtgaaaatacatgaagatcaaccaaatga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139311536 46 - 172585720 ATATAAAGCTTAGTTAtgtgaaaatacatgaagatcaaccaaatga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138471843 46 + 170955103 ATATAAAGCTTAGTTAtgtgaaaatacatgaagatcaaccaaatga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      188072 46 +    407600 ATATAAAGCTTAGTTAtgtgaaaatacatgaagatcaaccaaatga
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       60446 46 +    463628 ATATAAAGCTTAGTTAtgtgaaaatacatgaagatcaaccatatga
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39638647 46 +  71996105 ATATAAAGCTTAGTTAtgtgaaaatacatgaagatcaaccaaatga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       60078 46 -    115496 ATATAAAGCTTAGTTAtgtgaaaatacatgaagatcaaccaaatga
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138634625 46 - 171630274 ATATAAAGCTTAGTAAtgtaaaaacacatgaagatcaaccaaatga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            191324 46 +   1154217 ATATAAAGCTTAGTTAtgtaaaaatacatgaagatcaaccaaatga
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14017607 46 +  15232693 ATATAAAGCTTAGTAAtgtaaaaacacatgaagatcaaccaagtga
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      260408 46 +    446445 ATATAAAGCTTAGTAAtgtaaaaatacatgaagatcaaccaaatga
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      101441 46 +   1371726 ATGTAGAGCTGAGTAATGTGGAAATAAATGAAACTCAACCACATGa
i proCoq1.NW_012150019v1   C 0 I 37210
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15326143 306 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1830103.000000
s hg38.chr6_KI270758v1_alt     27809 223 +     76752 aaagagcaaaaattattcacaaattg--ctataacaaaggagtcagccaccatcttttgcattttggcagagactcaaagacaggcaaagaagtaggaaactttatagtggttaaaagggacctgattggaggctgttggcatggggaatgcttaaggggtaactggaagtggagtatcctatgtaattgggtaggatgcatatttagctttccctggttggtcc
s panTro5.chr6             142727562 223 - 175400573 aaagagcaaagattattcacaaattg--ctatgacaaaggagtcagccaccatcatttgcattttggcagagactcaaaggcaggcagagaagtaggaaactttatagtggttaaaagggacctgattggaggctgttggcatggggaatgcttaaggggtaactagaagtggagtaccctatgtaattggttaggatgcatatttagctttccctggttggtcc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879148 223 - 173848474 aaagagcaaagattattcacaaattg--ctatgacaaaggagtcagccaccatcatttgcattttggcagagactcaaaggcaggcagagaagtaggaaactttatagtggttaaaagggacctgattggaggctgttggcatggggaatgcttacggggtaactagaagtggagtaccctatgtaattggttaggatgcatatttagctttccctggttggtcc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2396917 221 +   2807050 aaagagcaaagattattcacaaattg--ctataacaaaggagtcagccaccatcatttgcattttggcagagactcaaaggcaggcagagaagtaggaaac--tatagtggttaaaagggacctgattggaggctgttggcatggggaatgcttacggggtaactagaagtggagtatcctatgtaattggttaggatgcatatttagctttccctggttggtcc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45689856 223 - 122973662 aaagagcaaagattatgcacaaattg--ctataacaaaggagtcagccaccatcatttgcattttggcagagactcaaaggcaggcagagaagtaggaaactttacagtggttaaaagggacctgattggaggctgttggcatggggaaagcttaaggggtaactagaagtggagtaccctatgtaattggttaggatgcatatttagctttccctggttggtcc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139311582 223 - 172585720 aaagagcaaagattattcacaaatgg--ctttaacaaaggagtcagccaccattatttgcattttggcagagactccaaggcaggcagagaagtaggaaactttatagtggtaaaaagggacctgactggaggctgctggcctggggaacatttaacggaaaactagaagtggaatatcctatgtaattggttagggtgcagatttagctttccctggttggtcc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138471889 223 + 170955103 aaagagcaaagattattcacaaatgg--ctttaacaaaggagtcagccaccattatttgcattttggcagagactccaaggcaggcagagaagtaggaaactttatagtggtaaaaagggacctgactggaggctgttggcctggggaacatttaacggaaaactagaagtggaatatcctatgtaattggttagggtgcagatttagctttccctggttggtcc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      188118 223 +    407600 aaagagcaaagattattcacaaatgg--ctttaacaaaggagtcagccaccattatttgcattttggcagagactccaaggcaggcagagaagtaggaaactttatagtggtaaaaagggacctgactggaggctgctggcctggggaacatttaacggaaaactagaagtggaatatcctatgtaattggttagggtgcagatttagctttccctggttggtcc
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       60492 223 +    463628 aaagagcaaagactattcacaaatgg--ctttaacaaaagagtcagccaccattatttgcattttggcagagactccaaggcaggcagagaagtaggaaactttatggtggtcaaaagggacctgactggaggctgctggcctggggaatgtttaagggaaaactagaagtggaatatcctgtgtaattggctagggtgcatatttagctctccccggttggtcc
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39638693 223 +  71996105 aaagagcaaagattattcacaaatgg--ctttaacaaaggagtcagccaccattatttgcattttggcagagactccaaggcaggcagagaagtaggaaactttatagtggtaaaaagggacctgactggaggctgttggcctggggaacatttaacggaaaactagaagtggaatatcctatgtaattggttagggtgcatatttagctttccctggttggtcc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       60124 223 -    115496 aaagagcaaagattattcacaaatgg--ctataacaaagcagtcagccaccatcatttcctttttggcagagactccaaggcaggcagagaagtaggaaactttatagtagtaaaaagggacctgactggaggctgttggcctggggaacgtttaagggaaaatttgaagtggaatatcctatgtaattggttagggtgcatatttagctttccctggttggtcc
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138634671 222 - 171630274 aaagagtgaagactattcacaacttg--ctatagcaaaggagtgagccaccatcacttgcattttggcagagactcaaaggcatgcagagaaatgggaaactttatcatggtgaaagggga-ctgattggaggctgctggcatggggaatatttaaggggtaactagaaatggagtatcctatgtaattggttagggtgcatatttagcttttcctgattggtcc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            191370 222 +   1154217 aaagagtaaagactactcacaacttg--ctatagcaaaggactgagccaccatcacttgcattttggcagagactcaaaggcaggcagagaaatgggaaactctgtcatggtaaaaaggga-ttgattggaggctgctggcatggggaatatttaaggcgtaactagaaatggagtaacctatgtaattggttagggtgcatatttagcttttcctgattggtcc
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14017653 221 +  15232693 aaagagtaaagactattcacaacttc--ctgtagcaaaggactgggtcaccatcacttgcattttggcagagactcaaaagcacgcagagaaatgggaaactttatcatggt-aaaaggga-ctgattggaggctgttggcatggggaatatttaaggggtaactagaaatggagtatcctatgtaattggttacggtacatatttagcttttcctgattggtcc
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      260454 224 +    446445 aaagagtaaagactattcacaacttggtatatagcaaaggagtgagccaccatcacttgcattttggcagagactcaaaggcacgcagagaaatgagaaactttatcatggtaaaagggga-ctgattggaggctgttggcatggggaatatttaaggggtaactagaaatggagtatcctgtgtaattggttaggatgcatatttagcttttcctgattggacc
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15326143 306 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=2091781.000000
s hg38.chr6_KI270758v1_alt     28032 230 +     76752 taagttggaagcaggcacaaatattgggggaactgtcagttattaatcaagtcctggccattttaaaacaattgttataaaagttattatttagcctcctggattgttactagagacagcaatctgacttcctgcaagtcggactta--agcagactaccttgctgtattgtttattgaagataagggaattggttccccaggcaggctgctgtaggctgtgggtcaaag--------gt------------------------------------
s panTro5.chr6             142727785 231 - 175400573 taagttggaagtaggcacaaatattgggggaactgtcagttattaatcaagtcctggccattttagaacaattgttataaaagttattatttagcttcctggattgtcactagagacagcaatctgacttcctgcaagtcggactta-gagcagactaccttgctggattgttcattgtagataagggaattggttccccaggcaggttgctgtaggctgtgggtcaaag--------gt------------------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879371 231 - 173848474 taagttggaagcaggcacaaatattgggggaactgtcagttattaatcaagtcctggccattttagaacaattgttataaaagttattatttagcttcctggattgtcactagagacagcaatctgacttcctgcaagtcggactta-gagcagactaccttgctggattgttcattgtagataagggaattggttccccaggcaggttgctgtaggctgtgggtcaaag--------gt------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397138 231 +   2807050 taagttggaagcaggcacaaatattgggggaactatcagttattaatcaagtcctggccattttagaacaattgttataaaagttattatttagcttcctggattgtcactagagacagcaatctgacttcctgcaagtcagactta-cagcagactaccttgctggattgtttattgtagataagggaattggttccctgggcaggctgctgtaggctgtgggtcaaag--------gt------------------------------------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690079 232 - 122973662 taagttggaagcaggcacaaatattgggggaactgtcagttattaatcaagtcctggccattttagaacaattgttataaaagttattatttagcttcctggattgtcactagagacagcaatctgacttcctgcaagtcgcacttaacggcagactaccttgctggattgtttattgtagataagggaattggttccccaggcaggttgctgtaggctgtgggtcaaag--------gt------------------------------------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139311805 230 - 172585720 taagttggaagcaggcacaaatattggggaaactgtcagttattaatcaagtcctggccatactat-acaattgttataaaagttattatttagcttcctggattatcactagagacagcaatctgacttcctgcacgtctgactta-tagcagactatcttgctggattgtttattgtagataaggggattggttccccgggcaaattgctgtaggctatgggtcaaag--------gt------------------------------------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138472112 231 + 170955103 taagttggaagcaggcacaaatattggggaaactgtcagttattaatcaagtcctggccattttagaacaattgttataaaagttattatttagcttcctggattatcactagagacagcaatctgacttcctgcacgtctgactta-tagcagactatcttgctggattgtttattgtagataaggggattggttccccgggcaggttgctgtaggctgtgggtcaaag--------gt------------------------------------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      188341 230 +    407600 taagttggaagcaggcacaaatattggggaaactgtcagttattaatcaagtcctggccatattat-acaattgttataaaagttattatttagcttcctggatcatcactagagacagcaatctgacttcctgcacgtctgactta-tagcagactatcttgctggattgtttattgtagataagggtattggttccctgggcaaattgctataggctgtgggtcaaag--------gt------------------------------------
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       60715 231 +    463628 taagttggaagcaggcacaaatattggggaaactgtcagttattaatcaagtcctggccattttagagcaattgttataaaagttattatttaacttcctggattatcactagagacagcaatctgacttcctgcacgtctgactta-tagcagactatcttgctggattgtttattgtagataaggggattggttccccgggcaggttgctgtaggctgtgggtcaaag--------gt------------------------------------
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39638916 231 +  71996105 taagttggaagcaggcacaaatattggggaaactgtcagttattaatcaagtcctggccattttagaacaattgttataaaagttattatttagcttcctggattatcactagagacagcaatctgacttcccgcacgtctgactta-cagcagactatcttgctgtattgtttattgtagacaaggggattggttccccgggcaggttgctgtaggctgtgggtcaaag--------gt------------------------------------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       60347 231 -    115496 taagttggaagcaggcacaaatattggggaaactgccagttattaatcaagtcctggccattttagaacaattgttataaaagttattatttagcttcctggattatcactagagacagcaatctgacttcctgcacgtctgactta-cagcagactatcttgctggattgtttattgtagataaggggattggttccccgggcaggttgctgtaggctgtgggtcaaag--------gt------------------------------------
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138634893 176 - 171630274 taagatggaagcaggcacagatattggggaaactgtcggttattaatcaagtcccggccattttagaacaattgttataaaagttattatttagcttcccggattgtcactagagacagcaatgtgacttcctgcaggtctgatgta--------------------------------------------------------cagacagctgaaggctgtgggtcaaag--------gt------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            191592 230 +   1154217 taagatggaagcaggcacgaacgttggggaaactgtcagtaattaatcaagtcccggccattttagaacaattgttataaaagttattatttagcttcctggattgtcactagagac-gcaatctgacttcctgcaggtctgatgta-cagcagactggcttgctggattgtttattgtagataaggggattgattccctgggcagattgctgcaggctgtgggtcaaag--------gt------------------------------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14017874 230 +  15232693 taagatggaagcaggcacaaatattggggaaattgtcagttattaatcaagtcttggccattttagaaccattgttgtaaaagttattattt-gcttcctggattgtcactagagacagcaatctgacttcctgcaggtctgatgta-cagcagactggcttgctggattgtttattgtagataaggggattggttccctgggcagattgctacaggctgcgggtcaaag--------gt------------------------------------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      260678 231 +    446445 taagatggaagcaggcacaaatgttgggaaaactgtcagttactaatcaagtcctggccattttagaacaattgttataaaagttattatttagcttcctggattgtcactagagacagcaatctgacttcctgcagatctgatgta-cagcaaacttgcttgctggattgtttattgtagataaggggattggttccctgggcagattgctgcaggctgtgggccaaaa--------gt------------------------------------
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15326449 270 -  18854210 tgaattagcagtagggacaaatattgagaaagctgtcatt-----attaagcccttgtcattttggaccaattgttatagaagttattatttaccttcccggattgtcactagaaacagccatctggcttcctgcgagtctgacctc-aagcaggtgggcttcttggattgtttattgtagacaaggggattgactccctggacaggttgctacaggttctgagtcaaagtGATATAAGTAATATGAGAGATGAACTTTGAGCCTTGAGCCAAAGC
i otoGar3.GL873550         I 306 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=8666.000000
s hg38.chr6_KI270758v1_alt     28262 1 +     76752 c
s panTro5.chr6             142728016 1 - 175400573 c
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879602 1 - 173848474 c
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397369 1 +   2807050 c
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690311 1 - 122973662 c
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139312035 1 - 172585720 c
i rheMac8.chr4             C 0 I 8
s macFas5.chr4             138472343 1 + 170955103 c
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      188571 1 +    407600 c
i macNem1.NW_012013344v1   C 0 I 8
s cerAty1.NW_012003702v1       60946 1 +    463628 c
i cerAty1.NW_012003702v1   C 0 I 8
s chlSab2.chr17             39639147 1 +  71996105 c
i chlSab2.chr17            C 0 I 8
s manLeu1.NW_012101600v1       60578 1 -    115496 c
i manLeu1.NW_012101600v1   C 0 I 8
s saiBol1.JH378315            191822 1 +   1154217 c
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14018104 1 +  15232693 c
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      260909 1 +    446445 c
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15326719 1 -  18854210 T
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e calJac3.chr4             138635069 0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=16304.000000
s hg38.chr6_KI270758v1_alt     28263 6 +     76752 tatttt
s panTro5.chr6             142728017 6 - 175400573 tatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879603 6 - 173848474 tatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397370 6 +   2807050 tatttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690312 6 - 122973662 tatttt
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378315            191823 6 +   1154217 tatttt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14018105 6 +  15232693 tatttt
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      260910 6 +    446445 tatttt
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15326720 6 -  18854210 TAAGTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       60579 8 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e calJac3.chr4             138635069 0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138472344 0 + 170955103 C
e rheMac8.chr4             139312036 8 - 172585720 I
e macNem1.NW_012013344v1      188572 8 +    407600 I
e chlSab2.chr17             39639148 8 +  71996105 I
e cerAty1.NW_012003702v1       60947 8 +    463628 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=-1636.000000
s hg38.chr6_KI270758v1_alt     28269 33 +     76752 tttttttt---------------------------------------tttcttagatgg-agtcttgctctgt-
s panTro5.chr6             142728023 29 - 175400573 tttttttt-------------------------------------------ttagacgg-agtcttgctctgt-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879609 27 - 173848474 tttttt---------------------------------------------ttagacgg-agtcttgctctgt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397376 38 +   2807050 ttttttttttt----------------------------------tttttttttgatgg-agtcttgctctgt-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690318 33 - 122973662 tttttttt---------------------------------------ttttttagactg-agtcttgctctgt-
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             138472344  8 + 170955103 -------------------------------------------------tttcagag-----------------
i macFas5.chr4             C 0 C 0
s otoGar3.GL873550          15326726 73 -  18854210 -TGCTTATAATACTGAGCAAAAGCCTTAAAAATGGTTAACATCCAGTTTCAATAGAAGGTAGTTCTGCTTTCTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       60579  8 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14018111  0 +  15232693 C
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      260916  0 +    446445 C
e calJac3.chr4             138635069  0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            191829  0 +   1154217 C
e rheMac8.chr4             139312036  8 - 172585720 I
e macNem1.NW_012013344v1      188572  8 +    407600 I
e chlSab2.chr17             39639148  8 +  71996105 I
e cerAty1.NW_012003702v1       60947  8 +    463628 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=115303.000000
s hg38.chr6_KI270758v1_alt     28302 24 +     76752 cgccaggctggagt--gcagtggcac
s panTro5.chr6             142728052 24 - 175400573 tgccaggctggagt--gcagtggcgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879636 24 - 173848474 tgccaggctggagt--gcagtggcgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397414 24 +   2807050 cgccaggctggagt--gcagtggcac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690351 24 - 122973662 tgccaggctggagt--gcagtggtgc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139312044 24 - 172585720 caacaggctggagt--gcagtggcgc
i rheMac8.chr4             I 8 C 0
s macFas5.chr4             138472352 24 + 170955103 caacaggctggagt--gcagtggtgc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      188580 24 +    407600 caacaggctggagt--gcagtggcgc
i macNem1.NW_012013344v1   I 8 C 0
s cerAty1.NW_012003702v1       60955 24 +    463628 caacaggctagagt--gcagtggcgc
i cerAty1.NW_012003702v1   I 8 C 0
s chlSab2.chr17             39639156 24 +  71996105 caacaggctggagt--gcagtggcgc
i chlSab2.chr17            I 8 C 0
s manLeu1.NW_012101600v1       60587 24 -    115496 caacaggctggagt--gcagtggcga
i manLeu1.NW_012101600v1   I 8 C 0
s otoGar3.GL873550          15326799 26 -  18854210 CAACAGGATGGGGCCAGCAGGGGAGC
i otoGar3.GL873550         C 0 I 423
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14018111  0 +  15232693 C
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      260916  0 +    446445 C
e calJac3.chr4             138635069  0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            191829  0 +   1154217 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1120248.000000
s hg38.chr6_KI270758v1_alt     28326 233 +     76752 gatctcagctcactgcaacctccacctcctgggctcaagtgattttcctgcctcagcctcccgagtagctgggactacagctgcgtgccaccatgcccagctaaatttgtatttttagtagagacaggggtttcaccatgttggccaggatggtcttgatctcttgacctcatgatccatccg-cttggcctcccaaagtgctgggattacaggcgtgagccaccatgcccagc
s panTro5.chr6             142728076 234 - 175400573 gatctcggctcactgcaacctccacctcctgggctcaagtgattttcctgcctcagcctcccgagtagcggggactacggctgtgctccaccatgcccagctaaatttgtatttttagtagagacaagggtttcaccatgttggccaggatggtctcgatctcttgacctcatgatccatctgccttggcctcccaaagtgctgggattacaggtgtgagccaccctgcccagc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879660 234 - 173848474 gatctcggctcactgcaacctccacctcctgggctcaagtgattttcctgcctcagcctcccgagtagcggggactacggctgtgctccaccatgcccagctaaatttgtatttttagtagagacaagggtttcaccatgttggccaggatggtctcgatctcttgacctcatgatccatctgccttggcctcccaaagtgctgggattacaggtgtgagccaccctgcccagc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397438 234 +   2807050 gatctcggctcactgaaacctccacctcctgggctcaagtgattttcctgcctcagcctcccaagtagctgggactacagctgtacgccaccatgtccagctaaatttgtatttttagtagagacaggggtttcactatgttggccaggatggtctcgatttcttgacctcatgatccatccgccttggcctcccaaagtgctgggattacaggcgtgagccacagtgcccagc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690375 233 - 122973662 gatctcggctcactgcaacctccacctcctgggctcaagtgattttcctgcctcagcctcccgagtagctgggactacagctgcgtgccaccatgcccagctaaatttgtatttttagtagagacagggg-ttcaccatgttggccaggatggtctcgatctcttgacctcatgatccgtctgccttggcctcccaaagtgctgggattacaggtgtgagccaacgtgcccagc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139312068 234 - 172585720 aatctcggctcactgcgacttctgcctcctgggctcaagtgattttcctgcctcagcctcccgagtagctgggactacagctgcacgccaccatgcccagctaaatttgtagttttagtagagacgggggtttcaccatgttggccaggaaggtctcgatctcttgacctcatgatccatccgtcttggcctcccaaagtgctgggattacaggcttgagccaccatgcccggc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138472376 234 + 170955103 aatctcggctcactgcaacctctgcctcctgggctcaagtgattttcctgcctcagcctcccaagtagctgggactacagctgcacgccaccatgcccagctaaatttgtagttttagtagaggcgggggtttcaccatgttggccaggatggtctcgatctcttgacctcatgatccatctgtcttggcctcccaaagtgctgggattagaggcatgagccaccgtgcccagc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      188604 234 +    407600 aatctcggctcactgcaacctctgcctcctgggctcaagtgattttcctgcctcagcctcccgagtagctgggactacagctgcacgccaccatgcccagctaaatttgtagttttagtagagacgggggtttcaccatgttggccaggaaggtctcgatctcttgacctcatgatccatccgtcttggcctcccaaagtgctgggattacaggcttgagccaccatgcccagc
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       60979 234 +    463628 aatctcggctcactgcaacctctgcctcctgggctcaagtgattttcctgcctcagcctcccaagtagctgggactacagctgcacgccaccatgcccagctaaatttgtagttttagtagaggcaggggtttcaccatgttggccaggatggtctcgatctcttgacctcatgatccatctgtcttggcctcccaaagtgctgggattagaggcatgagccaccgtgtccagc
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39639180 234 +  71996105 aatctcggctcactgcaacctctgcctcctgggctcaagtgattttcctgcctcagcctcccaagtagctgggactacagctgcacgccaccatgcccagctaaatttgtagttttagtagaggcgagggtttcaccatgttggccaggatggtctcgatctcttgacctcatgatccatctgtcttggcctcccaaagtgctgggattagaggcatgagccaccatgcccagc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       60611 234 -    115496 gatctcggctcactgcaacctctgcctcctgggctcaagtgattttcctgcctcagcctcccgagtagctgggactacagctgcacgccaccatgcccagctaaatttgtagttttagtagagacaggggtttcaccatgttggccaggatggtctcgatctcttgacctcatgatccatccgtcttggcttcccaaagtgctgggattacaggcatgagccaccgtgcctggc
i manLeu1.NW_012101600v1   C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14018111   0 +  15232693 C
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      260916   0 +    446445 C
e calJac3.chr4             138635069   0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            191829   0 +   1154217 C
e otoGar3.GL873550          15326825 423 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=20772.000000
s hg38.chr6_KI270758v1_alt     28559 5 +     76752 caggc
s panTro5.chr6             142728310 5 - 175400573 caggc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879894 5 - 173848474 caggc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397672 5 +   2807050 caggc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690608 5 - 122973662 caggc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139312302 5 - 172585720 cagtc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138472610 5 + 170955103 cagtc
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      188838 5 +    407600 cagtc
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       61213 5 +    463628 cagtc
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39639414 5 +  71996105 cagtc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       60845 5 -    115496 cagtc
i manLeu1.NW_012101600v1   C 0 C 0
s otoGar3.GL873550          15327248 5 -  18854210 aaggt
i otoGar3.GL873550         I 423 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14018111 0 +  15232693 C
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      260916 0 +    446445 C
e calJac3.chr4             138635069 0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            191829 0 +   1154217 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=45000.000000
s hg38.chr6_KI270758v1_alt     28564 7 +     76752 ctatttt
s panTro5.chr6             142728315 7 - 175400573 ctatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879899 7 - 173848474 ctatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397677 7 +   2807050 ctatttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690613 7 - 122973662 ctatttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139312307 7 - 172585720 ctatttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138472615 7 + 170955103 ctatttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      188843 7 +    407600 ctatttt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       61218 7 +    463628 ctatttt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39639419 7 +  71996105 ctatttt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       60850 7 -    115496 ctatttt
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138635069 7 - 171630274 ctacttt
i calJac3.chr4             C 0 C 0
s otoGar3.GL873550          15327253 7 -  18854210 ccatttg
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14018111 0 +  15232693 C
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      260916 0 +    446445 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            191829 0 +   1154217 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=2349174.000000
s hg38.chr6_KI270758v1_alt     28571 313 +     76752 tatatatggtctggccattgtctgtttctatatccagtttttcaGAAAGCACAATTTAAAATCTTATTCTT-TTTTCCACCACAGTAtaagatgcattagggtcacagtaggacaaattgtcccactggcaacaactacaaaaataggataaaattttaaaggt-atatttttaaaaagcattgtttagctaag-aaagtaaataggactagatgaataaaaattccaaagaagaaccatgcaaatgtaagctgacgtttggacatcactgtttctcttggtagcatttgctgtttgcaagtgtacgctgcgtttt
s panTro5.chr6             142728322 313 - 175400573 tatatatggtctggccattgtctgtttcaatatccagtttttcaGTAAGCACAATTTAAAATCTTATTCTT-TTTTCCACCACAGTAtaagatgcattagggtcacagtaggacaaattgtcccactggcaacaactaccaaaataggataaaattttaaaggt-atattttaaaaaagcattgtttagctaag-aaagtaaataggactagatgaacaaaaattccaaagaagaaccatgcaaatgtaagctgatgtttggacatcactgtttctcttggtagcatttgatgtttgcaagtgtgcgctgcgtttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140879906 313 - 173848474 tatatatggtctggccattgtctgtttcaatatccagtttttcaGTAAGCACAATTTAAAATCTTATTCTT-TTTTCCACCACAGTAtaagatgcattagggtcacagtaggacaaattgtcccactggcaacaactaccaaaataggataaaattttaaaggt-atatttttaaaaagcattgtttagctaag-aaagtaaataggactagatgaacaaaaattccaaagaagaaccatgcaaatgtaagctgatgtttggacatcactgtttctcttggtagcatttgctgtttgcaagtgtgcgctgcgtttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397684 313 +   2807050 tatatatggtctggccattgtctgtttctatatctagtttttcaGTAAGCACAATTTAAAATCTTATTCTT-TTTTCCACCACAGTAtaagatgcattagggtcacagtaggacaaattgtcccactggcaacaactacaaaaataggataaaattttaaagat-atattttaaaaaagcattgtttagctaag-aaagtaaataggactagatgaacaaaaattccaaagaagaaccatgcaaatgtaagctgatgtttggacatcactgtttctcttggtagcatttgctgtttgcaggtgtgtgctgcgtttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690620 313 - 122973662 tatatatggtctggccattgtctgtttctatatccagtttttcagtaagcacaatttaaaatcttattctt-ttttctaccacagtataagatgcattagggtaacagtaggacaaattgtcccactggcaacaactacaaaaataggataaaattttaaaggt-atatttttaaaaagcattgtttagctaag-aaagtaaataagactagatgaactaaaattccaaagaagaaccatgcaaatgtaagctgatatttggacatcactgtttctcttggtagcatttgctgtttgtaagtgtgcgctgcgtttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139312314 249 - 172585720 tatatatggtctggccattgcctctttctatatccagtttttcaGTGAGCACAATTTAAAATCTTATTCTT-TTTTCCACCACAGTATAAGATGCATTAGGGTCACAGTAGGACA-----------------------------------------------------------------ATTGTTTagctaag-aaagtaaacaggactagatgaactaaaattccaaagaagaactttgcaaatgtaagctgatgtttggacatcacgttttctcttggtagcatttgctgtttgtaagtgtgcgctgcatttt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138472622 249 + 170955103 tatatatggtctggccattgcctctttctatatccagtttttcaGTGAGCACAATTTAAAATCTTATTCTT-TTTTCCACCACAGTATAAGATGCATTAGGGTCACAGTAGGACA-----------------------------------------------------------------ATTGTTTagctaag-aaagtaaataggactagatgaactaaaattccaaagaagaaccatgcaaatgtaagctgatgtttggacatcacattttctcttggtagcatttgctgtttgtaagtgtgcgctgCATTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      188850 249 +    407600 tatatatggtctggtcattgcctctttctatatccagtttttcaGTGAGCACAATTTAAAATCTTATTCTT-TTTTCCACCACAGTATAAGATGCATTAGGGTCACAGTAGGACA-----------------------------------------------------------------ATTGTTTagctaag-aaagtaaacaggactagatgaactaaaattccaaagaagaactatgcaaatgtaagctgatgtttggacatcacgttttcttttggtagcatttgctgtttgtaagtgtgcgctgcatttt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       61225 250 +    463628 tatatatggtctggccattgcctctttctatatccagtttttcaGTGAGCACAATTTAAAATCTTATTCTT-TTTTCCACCACAGTATAAGATGCATTAGGGTCACAGTAGGACA-----------------------------------------------------------------ATTGTTTAGCTAAGAAaagtaaataggactagatgaactaaaattccaaagaagaaccatgcaaatgtaagctgatgtttggacatcacgttttctcttggtagcatttgctgtttgtaagtgtgcgctgcatttt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39639426 249 +  71996105 tatatatggtctggccattgcctctttctatatccagtttttcaGTGAGCACAATTTAAAATCTTATTCTT-TTTTCCACCACAGTATAAGATGCATTAGGGTCACAGTAGGACA-----------------------------------------------------------------ATTGTTTagctaag-aaagtaaataggactagatgaactaaaattccaaaaaagaaacatgcaaatgtaagctgatgtttggacatcacattttctcttggtagcatttgctgtttgtaagtgtgtgctgCATTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       60857 249 -    115496 tatatatggtctggccattgcctctttctatatccagtttttcaGTGAGCACAATTTAAAATCTTATTCTT-TTTTCCACCACAGTATAAGATGCATTAGGGTCACAGTAGGACA-----------------------------------------------------------------ATTGTTTagctaag-aaagtaaacaggactagatgaactaaaattccaaagaagaactatgcaaatgtaagctgatgtttggacatcacgttttctcttggtagcatttgctgtttgtaagtgtgcgctgcatttt
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138635076 307 - 171630274 tatgcatggtctggccattgtctgtttctatatccagtctttcaATAAGCACCATTTAAAATCTTATTCAT-TTttccgccacggtataagttgtattagggtcacaataggacaacttctcccactaacaacaactacaaaaataggatacaattttaaaggt-gtatttttagc----attgtttagctaag-aaagcaaataggactagatgaacttaaatttcaaagaagaaccatgcaaatgtaa--tgatgtttggacatcaccgtttctcctggtagcatttgctgactgtaagcgtgtgctgcgtttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            191829 306 +   1154217 tatgtaaggtctggccattgtccgtttctatatccagtctttcaATAAGCATCATTTAAAATCTTACTCAT-TTTTCCACCACAGTATCAGTtgtattagggtcacaataggacaaattctcccactaacaacaactacaaaaataggataaaattttaaaggt-atatttttagc----attgtttagctaag-aaagcaaataggactagatgaacttaaatttcaaagaagagccatgcaaatgtaagctgatgtttggacatcactttttctcttggtagcatttgctgattgtaagcttgtgctgcgt---
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14018111 309 +  15232693 tatgtatggtctggccattgtccgtttctatatccagtctttcaATAAGCATCATTTAAAATCTTATTCAT-TTTTCCACCACAGTAtaagttgtattagggtcacaataggatgaattctcccactaacaacaactacaaaaataggataaaattttaaaggt-atatttttagc----actgtttagctaag-aaagcaaataggactagatgaacttaaatttcaaagaagaaccatgcaaatgtaagctgatgtttgaacatcactttttctcttggtagcatttgctgattataagcttgtgctgcgttta
i cebCap1.NW_016107339v1   C 0 I 12
s aotNan1.NW_018508875v1      260916 309 +    446445 tatgtatggtctgaccattgtccgtttctatatccaatctttcaATAAGCACCATTTAAAATCTTATTCAT-TTTTCCACCACAGTAtaagttgtattagggtcacaataggacaaattctcccactaacaacaactacaaaaataagataaaattttaaaggt-atatttttagc----attgtttagctaag-aaagcaaataagactagatgaacttaaatttcaaagaagaaccatgcaaatgtaagctgatgtttggacatcactttttctcttggtagcatttgctgattgtaagcttgtgctccgtttt
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15327260 307 -  18854210 tatttagagtttgggcattgtc--tttctatattcagtctctcTGTAAGAACAACTAAAAATCTTTTTTTTGCcttccactttagtataagaagcatta-agtcatggtaaaacaaatttgcctactgaaaacaactagaaaaacagggataaattttaacactcatattttttagaggcatt-cttagctaag-aaagcaaatagtactaggtgaactaaaattcccaagaaga--tattcaaatagaaactaata-ttggacatgacttttactcttggtgacatttgctgattgcatat-tgggctacaaatt
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=8281.000000
s hg38.chr6_KI270758v1_alt     28884 1 +     76752 a
s panTro5.chr6             142728635 1 - 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140880219 1 - 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397997 1 +   2807050 a
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690933 1 - 122973662 a
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139312563 1 - 172585720 a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138472871 1 + 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      189099 1 +    407600 a
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       61475 1 +    463628 a
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39639675 1 +  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       61106 1 -    115496 a
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138635383 1 - 171630274 a
i calJac3.chr4             C 0 I 12
s aotNan1.NW_018508875v1      261225 1 +    446445 a
i aotNan1.NW_018508875v1   C 0 I 12
s otoGar3.GL873550          15327567 1 -  18854210 a
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14018420 12 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            192135 0 +   1154217 C
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=226074.000000
s hg38.chr6_KI270758v1_alt     28885 61 +     76752 gtgccatttttctgctaccgttttctgctgtagaaaagttttctgctacaattttcctaca
s panTro5.chr6             142728636 61 - 175400573 gtgccatttttctgctaccattttctgctgtaggaaagttttctgctacaattttcctaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140880220 61 - 173848474 gtgccatttttctgctaccattttctgctgtaggaaagttttctgctacaattttcctaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2397998 61 +   2807050 gtgccatttttctgctaccgttttctgctgtaggaaagttttctgctacaattttcctaca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690934 61 - 122973662 gtgccatttttctgctaccattttctgctgtaggaaagttttctgctacaattttcctaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139312564 59 - 172585720 atgtcatttttctgctacagttttctgctgtaggaaaattttctgctacaattttcct--a
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138472872 59 + 170955103 GTGTCATTTTTCTGCTACAGTTTTCTGCTGTAGGAAAATTTTCTGCTACAATTTTCCT--A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      189100 59 +    407600 atgtcatttttctgctacagttttctgctgtaggaaaattttctgctacaattttcct--a
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       61476 59 +    463628 gtgtcatttttctgctacagttttctgctgtaggaaaattttctgctacaattttcct--a
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39639676 59 +  71996105 GTGTCATTTTTCTGCTACAATTTTCTGCTGTAGGAAAATTTTCTGCTACAATTTTCCT--A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       61107 58 -    115496 atgtcatttttctgctacagttttctgctgtaggaaaattttc-gctacaattttcct--a
i manLeu1.NW_012101600v1   C 0 C 0
s saiBol1.JH378315            192135 15 +   1154217 --------------------tgatctgaggcagag--------------------------
i saiBol1.JH378315         C 0 C 0
s otoGar3.GL873550          15327568 19 -  18854210 gtgct-tatctcaggcacag-----------------------------------------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14018420 12 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      261226 12 +    446445 I
e calJac3.chr4             138635384 12 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1117967.000000
s hg38.chr6_KI270758v1_alt     28946 119 +     76752 gttttctgctgtaagaaagaaatcagcagcaattatggggccagtgtgatgtaactagaaaactgaggcatctcaaacactctggtt-tcttcaaaacacgttggttaacttctgatgct
s panTro5.chr6             142728697 119 - 175400573 gttttctgctgtaagaaagaaatcagcagcaattatggggccagtgtgatgtaactagaaaactggggcatctcaaacacactggtt-tcttcaaaacacgttggttaacttctgatggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140880281 119 - 173848474 gttttctgctgtaagaaagaaatcagcagcaattatggggccagtgtgatgtaactagaaaactggggcatctcaaacacactggtt-tcttcaaaacacgttggttaacttctgatggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2398059 119 +   2807050 gttttctgctgtaagaaagaaatcagcagcaattatggggccagagtgatataactagaaaactgaggcatctcaaacactctggtt-tcttcaaaacacgttggttaacttctgatgct
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45690995 119 - 122973662 gttttctgctgtaagaaagaaatcagcagcaattatggggtcagtgtgatgtaactagaaaaccgaggcatctcaaacactctggtt-tcttcaaaacgcgttggttaacttctgatgct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139312623 119 - 172585720 gttttctgttgtaagaaagaaaccagcagcaattatggggtcagattgatgtaactagaaaactgaggcatctcaaacattctggtt-tcctcaaaacacattggttaacttctgatgct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138472931 119 + 170955103 GTTTTCTGTTGTAAGAAAGAAACCAGCAGCAATTATGGGGTCAGATTGATGTAACTAGAAAACTGAGGCATCTCAAACACTCTGGTT-TCCTCAAAACACATTGGTTAACTTCTGATGCT
i macFas5.chr4             C 0 I 9092
s macNem1.NW_012013344v1      189159 119 +    407600 gttttctgttgtaagaaagaaaccagcagcaattatggggtcagattgatgtaactagaaaactgaggcatctcaaacattctggtt-tcctcaaaacacattggttaacttctgatgct
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       61535 119 +    463628 gttttctgttgtaagaaagaaaccagcagcaattatgggatcagattgatgtaactagaaaaccgaggcatctcaaacactctggtt-tcctcaaaacacattggttaacttccgatgtt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39639735 119 +  71996105 GTTTtctgttgtaggaaagaaaccagcagcaattatgggatcagattgatgtaactagaaaaccgaggcatctcaaacactctggtt-tcctcaaaacacattggttaacttctgatgct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       61165 119 -    115496 gttttctgttgtaagaaagaaaccagcagcaattatggggtcagattgatgtaactagaaaactgaggcatctcaaacattctggtt-tcctcaaaacactttggttaacttctgatgct
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138635396 119 - 171630274 gttttctgctggaggaaagagaccagcagcaactatggggccagagtgatgtacccagaaaaccaaagcatctcaaacactctggct-tcctcaaagcacattggttaacttctgatgat
i calJac3.chr4             I 12 C 0
s saiBol1.JH378315            192150 119 +   1154217 gttttctgctggaggaaagagaccagcagcaactatggggccagagtgatgtacctagaaaaccaaagcatctcaaacactctggct-tcgtcaaaacacattggttaacttctgatgct
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14018432 119 +  15232693 gttttctgctggaggaaagagaccagcagcaaccatggggccagagtgatgtacctagaaaaccaaagcatctcaaacactctagct-tccgcaaaacacattggttaacttctgatgct
i cebCap1.NW_016107339v1   I 12 C 0
s aotNan1.NW_018508875v1      261238 119 +    446445 gttttctgctggaggaaagagaccagcagcaattatggggccagagtgatgtacctagaaaaccaaagcatctcaaacactctggct-tcctcaaaacacattggttaacttctgatgtt
i aotNan1.NW_018508875v1   I 12 C 0
s otoGar3.GL873550          15327587 120 -  18854210 gtttactgcaggaggaatgagaccagcagcaattatggggctgaagtgacataattagaagactctggcacctcaaacattttgattctactcataacacatttattaaattctgatgct
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=903859.000000
s hg38.chr6_KI270758v1_alt     29065 117 +     76752 acggtagaaggtaaaac------------aaaaaactaaagtgtcaacttctgaaaggcagtgcaaaa-tctttcactgtccagtggtgttgaggaaacaaagacctaccattgataagggccctaaaac
s panTro5.chr6             142728816 117 - 175400573 acggtagaaggtaaaac------------aaaaaactagagtgtcaacttctgaaaggcagttcaaaa-tctttcgctgtccattggtgttgaggaaacaaagacctaccattgataaggggcctaaaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140880400 117 - 173848474 acggtagaaggtaaaac------------aaaaaactagagtgtcaacttctgaaaggcagttcaaaa-tctttcgctgtccattggtgttgaggaaacaaagacctaccattgataaggggcctaaaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2398178 117 +   2807050 acagtagaaggtaaagc------------aaaaaactagagtgtcaacttctgaaaggcagtgcaaaa-tgtttgactgtccagtggtgttgaggaaacaaagacctaccattgataaggggcctaaaac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45691114 117 - 122973662 atggtagaaggtaaaac------------aaaaaactagagtgtcaacttctgaaaggcagtgcaaaa-tctttcactgtccagtggtgttgaggaaacaaagatgtaccattgataaggggcctaaaac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139312742 117 - 172585720 atggtaaaaggcaaaac-----------aaaaaaactagagtgtcaacttct-aaaggcaatgcaaaa-tctttcactgtccagtggtgttgaggaaacaaagacctaccattgataaggggcctaaaac
i rheMac8.chr4             C 0 I 2403
s macNem1.NW_012013344v1      189278 118 +    407600 atggtaaaaggtaaaac-----------aaaaaaactagagtgtcaacttctgaaaagcagtgcaaaa-tctttcactgtccagtggtgttgaggaaacaaagacctaccattgataaggggcctaaaac
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       61654 118 +    463628 atggtaaaaggtaaaac-----------aaaaaaactagagtgtcaacttctgaaaggtagtgcaaaa-tctttcactgtccagtggtgttgaggaaacaaagacctaccattgataaggggcctaaaac
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39639854 118 +  71996105 atggtaaaaggtgaaac-----------aaaaaaactagagtgtcaacttctgaaaggtagtgcaaaa-tctttcactgtccagtggtgttgaggaaacaaagatctaccattgataaggggcctaaaac
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       61284 118 -    115496 atggtaaaaggtaaaac-----------aaaaaaactagagtgtcaccttctgaaaggcagtgcaaaa-tctttcactgtccagtggtgttgaggaaacaaagacctaccattgataaggggcctaaaac
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138635515 129 - 171630274 acggtagaaagttaaaaaataaaaataaaaaataactagaatgtcaacttctgaaaggcaatgcaaaa-tctctcactgcccagtgatgttgaggaaacaaagacctaccattgataagagccccaaaac
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            192269 129 +   1154217 atggtagaagttcaaaaaataaaaataaaaaataactagagtgtcaacttctgaaaggcagtgcaaaa-tctctcactgtccagtgatactgaggaaactgagacctatcattgataagggccctaaaac
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14018551 129 +  15232693 atggtagaaggttaaaaaataaaaataaaaaataactagagggtcaacttctgaaaggcagtgcaaaa-tctctcactgtccagtgatgttgaggaaaaaaagacctaccattgatatgggccctaaaat
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      261357 128 +    446445 atggtagaaggttaaaaactaaagat-aaaaataactagagtgtcaacttctgaaaggcagtgcaaaa-tctctcactgtccagtgatgttgaagaaacaaagatctaccattgataagggccctaaaac
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15327707 122 -  18854210 atggtgaaaggtgaaac--------aaagaaaaaactagactgacaagttctgaaaggtggtacaaaactctcttgaagctgaatggtgtttaggaaacaaagacctactgtggggagggaccctaaaac
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138473050 9092 + 170955103 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=70002.000000
s hg38.chr6_KI270758v1_alt     29182 10 +     76752 aaaacAGACG-------
s panTro5.chr6             142728933 10 - 175400573 aaaacAGACA-------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140880517 10 - 173848474 aaaacAGACA-------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2398295 10 +   2807050 aagacAGACA-------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45691231 10 - 122973662 aaaacAGACA-------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139315262 10 - 172585720 AAAACAGACG-------
i rheMac8.chr4             I 2403 C 0
s macNem1.NW_012013344v1      189396 10 +    407600 aaaacAGATG-------
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       61772 10 +    463628 aaaacAGACA-------
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39639972 10 +  71996105 aaaacAGACG-------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       61402 10 -    115496 aaaacAGACA-------
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138635644 10 - 171630274 aaaacAGACG-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            192398 10 +   1154217 aaaacAGACG-------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14018680 10 +  15232693 aaaaTAGATG-------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      261485 10 +    446445 aaaacAGATG-------
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15327829 17 -  18854210 taaacAGACCAGAGATA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138473050 9092 + 170955103 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=4224462.000000
s hg38.chr6_KI270758v1_alt     29192 473 +     76752 TAAGTTTCAGAAGAACTGGTGAATTGATGCCAAGTAGCAAcaaccacttatca--cctgaggacacttactgatctgagtgcttctttgg-agctaataatccaggtttggcctctgacaataggct-----cctccagtggactaagaaaatagcaagtgttttgtcatttgacgtggtgctgcaatgacaagatttgagagttgatgacttcaagcactttgtaggtgtctttttcaaaacacttgttaaatgttgaagatgtatggagtagaagactaatgagctaagctgaaaatttctttaagttcagcctaaatctcctt-cagctcttcaggattgaggagatgaaagctatcgggtttttcattgaaa-gtcatggaggactatgctctagaaatggggcaaaAC-----TGAagtcaggcatcacttagctaaagggacaagctctgagaaatgtgtcattaggtgatt--tcatctttgt
s panTro5.chr6             142728943 473 - 175400573 TAAGTTTCAGAAGAACTGGTGAATTGATGCCAAGTAGCAAcaaccacttatca--cctgaggacacttactgatctgagtgcttgtttgg-agctaataatccaggtttggcccctgacaatgggct-----cctccaatggactaagaaaatagcaagtgttttgtcatttgatgtggtgctgaaatgacaagatttgagagttgatggcttcaagcactttgtaggtgtccttttcaaaacacttgttaaatgttgaagatgtatggagtagaagactaatgagctaagctgaaaatttctttaagttcagcctaaatctcctt-cagcccttcaggattgagaagatgaaaactattgggtttttcattgaaa-gtcatggaggaccatgctctacaaatggggcaaaAC-----TTAagtcatgcatcacttagctaaagggacaggctctgagaaatgtgtcattaggtgatt--tcatctttgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140880527 473 - 173848474 TAAGTTTCAGAAGAACTGGTGAATTGATGCCAAGTAGCAAcaaccacttatca--cctgaggacacttactgatctgagtgcttgtttgg-agctaataatccaggtttggcccctgacaatgggct-----cctccaatggactaagaaaatagcaagtgttttgtcatttgatgtggtgctgaaatgacaagatttgagagttgatggcttcaagcactttgtaggtgtccttttcaaaacacttgttaaatgttgaagatgtatggagtagaagactaatgagctaagctgaaaatttctttaagttcagcctaaatctcctt-cagcccttcaggattgagaagatgaaaactattgggtttttcattgaaa-gtcatggaggaccatgctctacaaatggggcaaaAC-----TTAagtcatgcatcacttagctaaagggacaggctctgagaaatgtgtcattaggtgatt--tcatctttgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2398305 473 +   2807050 TAAGTTTCAGAAGAACTGGTGAATTGATGCCAAGCAGCAAcaaccacttatca--cctgaggacacttactgatctgagtgcttgtttgg-agctaataatccaggtttggcctctgacaataggct-----cctccagtggactaagaaaatagcaagtgttttgtcatttgatgtggtgctgaaatgacaagatttgagagttgatgacttcaagcactttgtaggtttccttttcaaaacacttgttaaatgttgaagatgtatggagaagaagactaatgagataagctgaaaatttctttaagttcagcctaaatctcctt-cagcccttcaggattgagaagatgaaaactatcgggtttttcattgaaa-gtcatggaggaccatgctctagaaatggggcaaaAC-----TTAagtcatgcgtcatttagctaaagggacaggctctgagaaatgtgttattaggtgatt--tcatctttgt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45691241 473 - 122973662 TAAGTTTCAGAAGAACTGGTGAATTGATGCCAAATAGCAAcaaccacttatca--cctgaggacacttactgatctgagtgcttgtttgg-agctaataatccagatttggcctctgacaataggct-----cctccaatggactaagaaaatagtaagtgtcttgtcatttgatgtggtgctgaaatgacaagatttgagagttgatgacttcaggcactttgtaggtgtccttttcaaaacgcttgttaaatgttgaagatgtatggagtagaagactaatgagctaagatgaaaatttctttaagttcagcctaaatctcctt-cagcccttcaggattgagaagatgaaaactattgggtttttcattgaaa-gtcatggaggaccatgctctagaaatggggcaaaAC-----TTAagtcatgcgtcacttagctaaagggacaggctctgagaaatgtgtcattaggtgatt--tcatctttgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139315272 473 - 172585720 TAAGTTTCAGAAGAACAGGTGAATTGATGCCAAGTAGCAACAACCACTTATCA--CCTGAGGACACTTACTGATCTGAGTGCTTGTGTGG-AGCTAATAATCCAGGTGTGGCCTCTGACAATAGGCT-----TCTCCAGTGGACTAAGAAATTAGCAAGTGTTGTGTCATTTGATGTGGTGCTGAAATGACAAGATTTGAGAGTTGATGAcctcaagcgctttgtaggtgtccttttcaaaacacttgttaaatgttgaagatatatggagtaaaagactaatgaactaagctgaaaatttctttaggttcagcttaaatctcctt-cagcccttcaggattgagaagatgaaaactactgggtttttcactgaaa-gtcgtggaggaccatgctctagaaatggggcaaaAC-----TTAagtcatgcatcacttagctaaagggacaggctctgagaaatgtgtcattaggtgatt--tcatctttgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138482142 473 + 170955103 TAAGTTTCAGAAGAACTGGTGTACTGATGCCAAGTAGCAAcaaccacttatca--cctgaggacacttactgatctgagtgcttgtgtgg-agctaataatccaggtttgggttctgacaatgggct-----cctccagtggactaagaaattagcaagtgttgtgtcatttgatgtggtgctgaaatgacaagatttgagagttgatgacctcaagcgctttgtaggtgtccttttcaaaacacttgttaaatgttgaagatgtatggagtaaaagactaatgagctaagctgaaaatttctttaagttcagcttaaatctcctt-cagcccttcaggattgagaagatgaaaactattgggtttttcactgaaa-gtcgtggaggaccatgctctagaaatggggTAAAAC-----TTAagtcatgcatcacttagctaaagggacaggctctgagaaatgtgtcattaggtgatt--tcatctttgt
i macFas5.chr4             I 9092 C 0
s macNem1.NW_012013344v1      189406 471 +    407600 TAAGTTTCAGAAGAACTGGTGAATTGATGCCAAGTAGCAACAACCACTTATCA--CCTGAGGACACTTACTGATCTGAGTGCTTGTGTGG-AGGTAATAATCCAGGTGTGGCCTCTGACAATAGGCT-----CCTCCAGTGGACTAAGAAATTAGCAAGTGTTGTGTCATTTGATGTGGTGCTGAAATGACAAGATTTGAGAGTTGATGAcctcaagcgctttgtaggtgtccttttcaaaacacttgttaaatgttgaagatgtatggagtaaaagactaatgaactaagctgaaaatttctttaagttcagcttaaatctcctt-cagcccttcaggattgagaagatgaaaactattgggtttttcactgaaa-gtcgtggaggaccatgctctagaaatggggtaaaAC-----TTAagtcatgcatcacttagctaaagggacaggctctgagaaa--tgtcatgaggtgatt--tcatctttgt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       61782 473 +    463628 TAAGTTTCACAAGAACTGGTAAATTGATGCCAAGTAGCAAcaaccacttatca--cctgaggacccttactgatctgagtgcttgtgtgg-agctaataatccaggtttggcctctgacaataggct-----cctccagtgaactaagaaattagcaagtgttgtgtcatttgatgtggtgctgaaatgacaagatttgagagttgatgacctcaagcgctttgtaggtgtccttttcaaaacacttgttaaatgttgaagatgtatggagtaaaagactaatgagctaagctgaaaatttctttaagttcagcttaaatctcctt-cagcccttcaggactgagaagatgaaaactattgggtttttcactgaaa-gtcgtggaggaccatgctctagaaatggggcaaaAC-----TTAagtcatgcatcacttagctaaagggacaggctctgagaaatgtatcattaggtgatt--tcatctttgt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39639982 473 +  71996105 TAAGTTTCAGAAGAACTGGTGAATTGATGCCAAGTAGCAACAACCACTTATCA--cctgaggacacttactgatctgagtgcttgtgtgg-agctaataatccaggtttggcctctgacaataggct-----cctccagtggactaagaaattagcaagtgttgtgtcatttgacgtggtgctgaaatgacaagatctgagagttgatgacctcaagcgctttgtaggtgtccttttcaaaacacttgttaaatgttgaagatgtatggagtaaaagactaatgagctaaactgaaaatttctttaagttcagcttaaatctcctt-cagcccttcaggattgagaagatgaaaacTATTGGGTTTTTCACAGACA-GTCGTGGAGGACCATGCTCTAGAAATGGGGCAAAAC-----TTAagtcatgcttcacttagctaaagggactggctctgagaaatgtgtcattaggtgatt--tcacctttgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       61412 473 -    115496 TAAGTTTCAGAAGAACTGGTGAATTGATGCCAAGTAGCAAcaaccacttatca--cctgaggacacttactgatctgagcgcttgtgtgg-agctaataatccaggtttggcctctgacaatgggct-----cctccagtggactaagaaattagcaagtgttgtgtcatttgatgtggtgctgaaatgacaagatttgagagttgatgacctcaagcgctttgtaggtgtccttttcaaaacacttgttaaatgttgaagatgtatagagtaaaagactaatgagctaagctgaaaatttctttacgttcagcttaaatctcctt-cagcccttcaggattgagaagatgaaaactattgggtttttcactgaaa-gttgtggaggaccatgctgtagaaatggggcaaaAC-----TTAagtcatgcatcacttagctaaagggacaggctctgagaaatgtgtcattaggtgatt--tcatctttgt
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138635654 443 - 171630274 GAAGTTTCAGAAGAACTGATGAATTGATGCCAAGTATCAACAACTAATTATCACCTCTGAGGACACTTACTGATCTGAGGGCTTGTCTGG-AGCTAAAAACCCAGGTTTGGCCTCTGACAATGGGCT-----CTTCCAATGGACTAA-------------------------GATgtgatgctgaaataatgatatttcagagctgatgacctcaagcactttgtaggtgtccttttcaagacacttgtttcattttgaagatatatgg------agactaatgagctaagccgaaaatatctttaagttcagcctaaacctcctt-cagtccttcaggactgagaagatgaaaacaatggggtttttcattgaaa-gtcatggaggaccgtgctctagaaat-gggaaaacc-----TTAagtcacgcatcacttagctaaagggataggtcctgagaaatgtatcactgggtgaat--tcatctctgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            192408 448 +   1154217 TAAGTTTCAGAAGAACTggtgaattgatgccaagtatcaacaactacttatca--tctgaggacacttactgatctgagtgcttgtttgg-agctaaaaatccaggtttggcctctgacaatgggct-----cctccaatggactaa-------------------------gatgtagtgctgaaataatgctatttgagagctgaagacctcaagcactttgcaggtgtccttttcaagacacttgtctcattttgaagatagatggagtagaagagtaatgagctaagctgaaaatttcattaagttcagcctaaatctcctt-cagtccttcagaactgagaagatgaaaactatgaggtttttcattgaaa-gtcatggaggaccatgctctagaaatggggaaaaac-----TTAagtcatggatcacttatctaaagggataggtcctgagaaatgtatcattgggtgatt--tcatctttgt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14018690 449 +  15232693 TAAGTTTCAGAAGAACTGATGAATTGACGCCAAGTATCAACAACTACTTATCA--CCTGAGGATACTTACTGATCTGAGTGCTTGTTTGG-AGCTAAAAATCCAGGTTTGGCCTCTCACAATGGGCT-----CTTCCAATGGTCTAA-------------------------GATgtggtgctgaaataatgatatttgagagccgatgacctcaagcactttgtaggtgtccttttcaagacacttgttgcattttgaagatatatggagtagaagagtaatgagctaagctgaaaatttctttaagttcagcctaaatctcctt-cagtccttcaggactgagaagatgaaaactatggggtttttcattgaaaggtcatggaggactgtgctttagaaatggggaaaaac-----TTAagtcatgtgtcacttatctaaagggataggtcctgagaaatgtatcattaggtgatt--tcatctttgt
i cebCap1.NW_016107339v1   C 0 I 3845
s aotNan1.NW_018508875v1      261495 447 +    446445 TAAGTTTCAGAAGAACTGGTAAATTGATGCCAAGTATCAACAACTACTTATCA--CCTGGGGACACTTAATGATCTGAGTGCTTGTTTGG-AGCTAAAAATCCAGGTTTGGCCTCTGACAATGTGCT-----CTTCCAATGGACTAA-------------------------GATAGGATgctgaaataatgatatttgagagctgatgacctcaagcactttgtaggtgtccttttcaagacacttgtttcattttgaagatatatggagtagaagactaatgagctaagctgaaaatttctttaagttcagcctaaatctcctt-cagtccttcaggactgagaaggtg-aaactatggggtttttcattgaaa-gtcatggaggaccgtgctctagaaatggggaaaaac-----TTAagtcatgcatcatttagctaaagggataggtcctgagaaatgtatcattgggtgatt--tcatctttat
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15327846 417 -  18854210 TAATTTTGGGAAGAAGGGATGAAATGATACTA----------------TATCA--CCCAAGGGCAACTA-----TTGAATGCTCGCTAAGTAGCTAAAAATCCAGGTTTGGCCTCTAACAATTGGCTCCCCACCCCCAATGGATTAAGAAAATAGCAGATATTTGGTCATTTGCTGTAGTACTGAAATGGCGATATTTGAGAGttgg------------------------------------------caaatactgaagatgtaaagagtagaagactaatgagctaagttgaaaatttc-tcaagttcagccttaatctccttccagcccttcaggactgaaaagatgaaaactgttggccttgtcattaaaa-gtcatggaggaccaggctctaggaaggaggagaaacacaagtagagtcaagcgtcacttcactggggggaag---catgagaaatgcaccgttaggctgtttgtcattct---
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1544035.000000
s hg38.chr6_KI270758v1_alt     29665 218 +     76752 gtgaacatcacagagtgtccttac-gcaaactagatgttatagcctactatacatttaggctatatggtacaccctattacccctaggcgacaaacctgtacagcatgtgactgtattgaatactattggtaattgtaacacaatgctaactgtttatgtatctaaacatacaaaaggtgtggtgaaaataccatatgaaagatttttaaatggtagat
s panTro5.chr6             142729416 218 - 175400573 gtgaacatcacagagtgtccttat-gcaaactagatgttatagcctactgcacatttaggctatatggtacagcctattacccctaggcgacaaacctgtacagcatgtgactgtattgaatactattggtaattgtaacacaatgctaactgtttatgtatctaaacatagaaaaggtgtaatgaaaataccatatgaaagatttttaaatggtagat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140881000 218 - 173848474 gtgaacatcacagagtgtccttat-gcaaactagatgttatagcctactgcacatttaggctatatggtacagcctattacccctaggcgacaaacctgtacagcatgtgactgtattgaatactattggtaattgtaacacaatgctaactgtttatgtatctaaacatagaaaaggtgtaatgaaaataccatatgaaagatttttaaatggtagat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2398778 218 +   2807050 gtgaatatcacagagtgtccttat-gcaaactagatgttatagcctactacacatttaggctatatggtacagcctattacccctaggcgacaaacctgtacagcatgttgctgtattgaatactactggtaattgtaacacaatgctaactgtttatgtatttaaacatagaaaagatgtagtgaaaataccatatgaaagatttttaaatggtggat
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45691714 216 - 122973662 gtgaacatcacagactgtccttaa-gcaaactagatgttatagcctactacacatttaggctatatggtacagcctattgccccta-gcgacaaacctgtacagcatgtgactgtactgaatactgttggtaattgtaacacaatgctaactgtttatgtatctaaatgtagaaaaggtgtagtgaaaataccatatgaaaga-ttttaaatggtagat
i nomLeu3.chr1a            C 0 M 206
s rheMac8.chr4             139315745 218 - 172585720 gtgaacatcacagagtgtccttac-gcaaactagatactatagcctactacacatttaggctacctggtacagcctattacccctaggcgacaaacctgtacagcatgtgactgtactgaatgctattggtaattgtaacgcaatgctaactgtttgtgtatctaaacatagaaaaggtgtagtgaaaataccatatgaaagatttgtaagtggtacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138482615 218 + 170955103 atgaacatcacagagtgtcctgac-gcaaactagatactatagcctactacacatttaggctacctggtacagcctattacccctaggcgacaaacctgtacagcatgtgactgtactgaatgctattggtaattgtaacgcaatgctaactgtttgtgtatctaaacatagaaaaggtgtagtgaaaataccatatgaaagatttgtaagtggtacgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      189877 218 +    407600 atgaacatcacagagtgtcctgac-gcaaactagatactatagcctactacacatttaggctacctggtacagcctattacccctaggcgacaaacctgtacagcatgtgactgtactgaatgctattggtaattgtaacacaatgctaactgtttgtgtatctaaacatagaaaaggtgtagtgaaaataccatatgaaagatttgtaagtggtacat
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       62255 218 +    463628 gtgaacatcacagagtgtccttac-gcaaactagatactatagcctactacacatttaggctacctggtacagcctattacccctaggcgacaaacctgtacagcaagtgactgtactgaatgctattggtaattgtaacacaatgctcactgtttgtgtatctaaacatagaaaaggtgtagtgaaaataccatatgaaagatttgtaagtggtacat
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39640455 218 +  71996105 gtgaacatcacagagtgtccttat-gcaaactagatattatagcctactatacatttaggctacctggtacagcctattacccctaggcgacaaacctgtacagcacgtgactgtactgaatactattggcaattttaacataatgctaactgtttgtgtatctaaacatagaaaaggtgtagtgaaaataccatatgaaagatttgtaagtggtacat
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       61885 218 -    115496 gtgaacatcacagagtgtccttac-gcaaactagatactatagcctactacacatttaggctacctggtacagcctattacccctaggcgacaaacctgtacagcaagtgactgtactgaatgctattggtaattgtaacacaatgctaactgtttgtgtatctaaacatagaaaaggtgtagtgaaaataccatatgaaagatttgtaagtggtacat
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138636097 192 - 171630274 gtgaacatcac--agtgtccttac-acacactagatgttatagcctactgcacatttaggctgtatggtacggcctattactcctaagctacaaacatatacagcatgtgactatactgaatcctactggcaattgtaacataaggctaagtgtttgtgtgtctaa------------------------accatatgaaatgtttgtaaatggcacat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            192856 192 +   1154217 gtgaacatcacagagtatccttac-acaaacgagatgttatagcctgctacacatttaggctgtatggtacggcctattactcctaagctacaaacatatacagcatgtgactatactgaatcctactagtaattgtaatataaggctaagtgtt--tgtatttaa------------------------accatatgaaatatttttaaatggtacat
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      261942 194 +    446445 gtgaacatcacagattattcttac-gcaaactagatgttatagcctactacacatttagactatatggtacggcctatcactcctaagctacaaacatatacagcatgtgactatactgaatcctactggtaattgtaacataaggctaagtgtttgtgtatctaa------------------------accatatGAAATATTTTTaaatggtacat
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15328263 189 -  18854210 ----gca----agagtgcactaacaggaaactcaagggtgcagcct------------ggctgc------tggcctactgctccaaggctacaaacccaggcagcatgtgac-atactgaatattgtgtgcag-tgcaacacaatggtaaatatttgtgtatgtaaacatagaaaatgtacagtaaaaataaagtataaaagataaata--tggtacag
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=837407.000000
s hg38.chr6_KI270758v1_alt     29883 125 +     76752 ctttctaggacacttaccatgaatggagcttgcagaactggaagttgccct-gatgagtcagtgagtgagtggtgagtgaatgcaagggcctaaggcattactatacattactgtagactttataa
s panTro5.chr6             142729634 125 - 175400573 ctttctaggacatttaccatgaatggagcttgcaggactggaagttgccct-ggtgagtcagtgagtgagtggtgagtgaatttgagggcctagggcattactatacactactgtagactttataa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140881218 125 - 173848474 ctttctaggacatttaccatgaatggagcttgcaggactggaagttgccct-ggtgagtcagtgagtgagtggtgagtgaatttgagggcctagggcattactatacactactgtagactttataa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2398996 125 +   2807050 ctttctaggacacttaccatgaacggagcttgcaggactggaagttgccct-gatgagtcagtgagtgagtggtgagtgaatgcgagggcctaaggcattactatacattactgtagactttataa
i gorGor5.CYUI01000036v1   C 0 C 0
s rheMac8.chr4             139315963 126 - 172585720 ctgtctaggacacttaccatgaatggagcttgcaggactggaagttgccctgggcgagtcagtgagtgagtggtgagtgaatgtgagagcctagggcattactgtacactactgtagactttataa
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138482833 126 + 170955103 ctgtctaggacacttaccatgaatggagcttgcaggactggaagttgccctgggcgagtcagtgagtgagtggtgagtgaatgtgagggcctagggcattaccctacactactgtagactttataa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      190095 126 +    407600 ctgtctaggacacttaccatgaatggagcttgcaggactggaagttgccctgggcgagtcagtgagtgagtggtgagtgaatgtgagagcctagggcattactgtacactactgtagactttataa
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       62473 126 +    463628 ctgtctaggacacttaccatgaatggagcttgcaggactggaagttgccctaggctagtcagtgagtgagtggtgagtgaatgtgagagcctagggcattactgtacactactgtagactttataa
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39640673 126 +  71996105 ctgtctaggacatttaccatgaatggagcttgcaggattggaagttgccctgggcgagtcagtgagtgagtggtgagtgaatgtgagggcctagggcattactgtacactactgtagactttataa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       62103 126 -    115496 ctgtctaggacacttaccatgaatggagcttgcaggactggaagttgccctgggcgagtcagtgagtgagtggtgagtgaatgtgagagcctagggcattactgtacactactgtagactttataa
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138636289 126 - 171630274 ctgtctagggcacttaccaggaatggagcttgcaggactggaagttgctctgggggagtcggtgagtgagtggtgagtgaatgtgaaggcctaggacattactgtgccctactgcagactttataa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            193048 113 +   1154217 ctgtctagggcacttaccatgaatggagcttgcaggaccggaagttgctctgtgt--gtcagtgagtgag-----------tgtgaaggcctagggtattactataccctactgcagactttataa
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      262136 126 +    446445 ctgtctagggcacttaccatgaatggagcttgcaggactggaagttgctctgggtgagtcagtgagtgagtggtgagtgaatgtgaaggcctggggcattactgttccctactgcagactttatga
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15328452  95 -  18854210 ttgtccaggtcacttacctcaaa---------------tggaagttgctct---------ggtgattgagttgtgag----tgtgagggtccaggacattactgagcactactgcagacctta---
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I
e nomLeu3.chr1a             45691930 206 - 122973662 M

a score=1546164.000000
s hg38.chr6_KI270758v1_alt     30008 194 +     76752 atactgta-actaagacaacattaaatttatgaaaaatg-tt---tttctacaat----aattaaccttagcttactctaactttttaaactttatatactt--aatttttt----aactttttgactgttttgtaatagcacagcttaaaacacaa--acactatacaaaaatat----tttctttatatccttatactatgagcttttt--tcta
s panTro5.chr6             142729759 200 - 175400573 atattgta-actaagacaacactaaatttatgaaaaatgttt---tttctacaataatgaattaaccttagcttactgtaactttttaaactttataagctt--aa-ttttt----aactttttgactgttttgtaatagcacagcttaaaacacaaacacactatacaaaaatat----tttctttatatccttatactatgagcttttt--tcta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140881343 200 - 173848474 atattgta-actaagacaacactaaatttatgaaaaatgttt---tttctacaataatgaattaaccttagcttactgtaactttttaaactttataagctt--aa-ttttt----aactttttgactgttttgtaatagcacagcttaaaacacaaacacactatacaaaaatat----tttctttatatccttatactatgagcttttt--tcta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2399121 199 +   2807050 atactgta-actaagacaacactaaatttatgaaaaatgttt---tttctacaataatcaattaaccttagcttactataactttttaaactttatgtactt--aatttttt----aattttttgactgttttgtaatagcacagcttaaaacacaagcacac--tacaaaaatat----tttctttatatccttatactatgagcttttt--tcta
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45692136 201 - 122973662 atactgta-actaagacaacactaaatttatgaaaaatgttt---tttctacaataatgaattaaccttagcttactataactttttaaactttataaactt--aatttttt----aactttttgactgttttgtaatagcacagcttaaaacacaaacacactatacaaaaatat----tttctttatatccttatactatgagcttttt--tcta
i nomLeu3.chr1a            M 206 C 0
s rheMac8.chr4             139316089 200 - 172585720 atactgta-actaagactacactaaacttatgaaaaa-attt---tttctacagtaatgaattaaccttagcttactgtaattttttaaactttataaactt--aatttttt----aactttttgactgttttgtaatagcacagtttaaaacacaaatacactatccaaaaatat----tttatttatatccttatactatgagcttttt--tcta
i rheMac8.chr4             C 0 I 5
s macFas5.chr4             138482959 200 + 170955103 atactgta-actaagactacactaaacttatgaaaaa-attt---tttctacagtaatgaattaaccttagcttactgtaattttttaaactttataaactt--aatttttt----aactttttgactgttttgtaatagcacagtttaaaacacaaatacactatccaaaaatat----tttctttatatccttatactatgagcttttt--tcta
i macFas5.chr4             C 0 I 313
s macNem1.NW_012013344v1      190221 200 +    407600 atactgta-actaagactacactaaacttatgaaaaa-attt---tttctacagtaatgaattaaccttagcttactgtaattttttaaactttataaactt--aatttttt----aactttttgactgttttgtaatagcacagtttaaaacacaaatacactatccaaaaatat----tttatttatatccttatactatgagcttttt--tcta
i macNem1.NW_012013344v1   C 0 I 5
s cerAty1.NW_012003702v1       62599 200 +    463628 atactgta-actaagactacactaaacttacgaaaaa-attt---tttctacagtaatgaattaaccttagcttactgtaattttttaaactttataaactt--aatttttt----aactttttgactgttttgtcatagcacagtttaaaacacaaatacactatccaaaaatat----tttctttatatccttatactatgagcttttt--tcta
i cerAty1.NW_012003702v1   C 0 I 9
s chlSab2.chr17             39640799 200 +  71996105 atactgta-actaagactacactaaacttaggaaaaa-attt---tttctacagtaatgaattaaccttagcttactgtaattttttaaactttataaactt--aatttttt----aactttttgactgttttgtaatagcacagtttaaaacacaaatacactatacaaaaatat----tttctttatatccttatactatgagattttt--tcta
i chlSab2.chr17            C 0 I 7
s manLeu1.NW_012101600v1       62229 200 -    115496 atactgta-actaagactacactaaacttatgaaaaa-attt---tttctacagtaatgaattaaccttagcttactgtaattttttaaactttataaactt--aatttttt----aactttttgactgttttgtaatagcacagtttaaaacacaaatacactatccaaaaatat----tttctttatatccttatactatgagcttttt--tcta
i manLeu1.NW_012101600v1   C 0 I 5
s calJac3.chr4             138636415 201 - 171630274 atactgta-actaagactacactaaatttatgaaaaatgttt---tttcttcaacaatgaattaaccttagcttactataactttttaaacttcataaactt--tctttttt----aactttgtgactgttttgtaacagcacagtttaaaacac----acactgtacaaaaatattttctttctttatatccttatactatgagcctttt--tcta
i calJac3.chr4             C 0 I 10
s saiBol1.JH378315            193161 201 +   1154217 atactgta-actaagactacactaaatttatgaaaaatgttt---tttcttcaacaatgaattaaccttagctttctataactttttaaactttataaactt--tatttttt----aactttgtgactgttttgtaatagcacagtttaaaacgt----acactgtacaaaaatattttctttctttatactcttatactatgagcctttt--tcta
i saiBol1.JH378315         C 0 I 8
s aotNan1.NW_018508875v1      262262 196 +    446445 acactgta-actaagactacactaaatttatgaaaaatgttt---tttcttcaacaatgaattaaccttagcttactataactttttaaactttatggactt--tatttttt----aactttgtgactgttttgtaataacacagtttaaaacac----acactgtacaaaaata-----tttctttatatccttatactatgagtctttt--tcta
i aotNan1.NW_018508875v1   C 0 I 8
s otoGar3.GL873550          15328547 212 -  18854210 acatagtacactcaagctacattgaatttatgaaaaa-gtcttggtttcttcaaaaatcaattaaccttaacttattgtaacttttt-tactccataaacttacaatttttttaaaaactttttgacttttttgt-ata--acagcttaaaacacaaatacattacacaaaattattttctttctttatattttcatttcataagcttttttgtcta
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=3340064.000000
s hg38.chr6_KI270758v1_alt     30202 459 +     76752 cttaa---------------ttttttttt-ttcactttttaaac-tt---------------aaaaaaaaatctaagaaacacacacattagcctaggcctactcagagtcaggatcatcaatatcactgtttcccacttccacatcttgtcctaccaaaatgtcttca-ggggccatagcacacatggagaggccatctcctatgataactacactttcttctggaattcctcctgaaggacctgcttgaggctcttcttgaggaggtgtcactc--ttcagaaacaggtccatgatggtttgcttggttt-----ccttttttcatcatagatttgcttataagcagatgattcaccgtgaacattcctctttattaatgaaaaccttgttgtgctggggttcatgttttcaaa-tttttaaggagcttgttgaggtctgcaaaagctcctgctaaaccctgcacagggaattttatttggggttcttcttcttcttc
s panTro5.chr6             142729959 476 - 175400573 tttaatttttttttttttttttttttttt-tttactttttaaac-tta-------------aaaaaaaaaatctaagaaacacacacattagcctaggcctactcagggtcagggtcatcaatatcactgtttcccatttccacatcttgtcctaccaaaatatcttca-ggggccatagcacacatggagatgccatctcctatgataactacactttcttctggaattcctcctgaaggacctgcttgaggctcttcctgaggaggtgtcactc--ttcagaaacagatctgtggtggtttgcttggttt-----ccttttttcatcatag-tttgcttataagcagatgattcaccatgaacattcctctttattaatgaaaaccgtgctgtgctggggttcatgttttcaaactttttagggagcttgttgaggtctgcaaaagctcctgctaaaccctgcacagggaattttatttggggttcttcttcttcttc
i panTro5.chr6             C 0 I 1658
s panPan2.chr6             140881543 465 - 173848474 tttaa-------ttttttttttttttttt-ttaacttttaaaac-tt----------------aaaaaaaatctaagaaacacacacattagcctaggcctactcagggtcagggtcatcaatatcactgtttcccatttccacatcttgtcctaccaaaatatcttca-ggggccatagcacacatggagatgccatctcctatgataactacactttcttctggagttcctcctgaaggacctgcttgaggttcttcctgaggaggtgtcactc--ttcagaaacagatctgtggtggtttgcttggttt-----ccttttttcatcatag-tttgcttataagcagatgattcaccatgaacattcctctttattaatgaaaaccgtgctgtgctggggttcatgttttcaaactttttaaagagcttgttgaggtctgcaaaagctcctgctaaaccctgcacagggaattttatttggggttcttcttcttctt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2399320 445 +   2807050 tttaa----------ttttttttttcttt-tttactttttaaac-tt--------------aaaaaaaaaatctaagaaacacacacattagcctaggcctactcagagtcaggatcatcagtatcactgtttc-----------------cctaccaaaatgtcttca-ggggccatagcacacatggagaggccatctcctatgataactacactttcttctggaattcctcctgaaggacctgcttgaggctcttcttgaggaggtgtcactc--ttcagaaacaggtccatgatggtttgctttgttt-----ccttttttcatcatagatttgcttataagcagatgattcaccatgaacattcctctttattaatgaaaaccttgttgtgct-gggttcatgttttcaaactttttagggagcttgttgaggtctgcaaaagctcctgctaaaccctgcagagggaattttatctggggttcttcttcttc---
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45692337 459 - 122973662 tttat--------------ttatttattt-tttactttttaaac-tt----------------aaaaaaaatctaagaaacacacacatcagcctaggcctactcagggtcagggtcatcaatatcactgtttcccacttccacatcttgtcctaccaaaatgtcttca-ggggccatagcacacatggagaggccatctcctatgataactacaccttctt-tggaatttctcctgaaggacctgcttgaggctcttcttgaggaggtgtcactc--ttcagaaacaggtccatggtggtttgcttggttt-----ccttttttcgtcatagatttgcttataagcagatggttcatcatgaacattcctctttattaatgaaaaccttattgtgctggggttcatgttttcaaactttttaaggagcttgttgaggtctgcaaaagctcctgctaaaccctgcacagggaattttatttggggttcttcttcttcttc
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139316294 451 - 172585720 ---------------ttatttatttattt-tttactttttaaac-tt---------------aaaaaaaaatctaagaaacacacacattagcttaggcctactcggggtcaggatcatcaatatcactgttttccacgtccacatcttgtcttaccaaaatgtcttca-ggggccatagtacacaaggagatgccctctcctatgataactatactttattctcgaattccccctgaagaacctgcttaaggctctttttgaggaggtgtcactc--ttcagaaacaggtccatgatggtttgtttggttt-----ctttttttcatcatagatttgcttataagcagataattcaccatgaacattcctctttattaatgaaaacctttttgtgctggggttcatgctttcaaactttttaaggagtttgttgaggtctgcaaaagctcctgctaaaccctgcgt---gaattttatttggggttcttc---ttc---
i rheMac8.chr4             I 5 C 0
s macFas5.chr4             138483472 456 + 170955103 ---------------tttttttttttttt-tttactttttaaac-tta-------------aaaaaaaaaatctaagaaacacacacattagcttaggcctactcggggtcaggatcatcaatatcactgttttccactttcacatcttgtcctaccaaaatgtcttca-ggggccatagcacacatggagatgccctctcctatgataactatactttattctcgaattccccctgaaggacctgcttaaggctctttttgaggaggtgtcactc--ttcagaaacgggtccatgatggtttgtttggttt-----ctttttttcatcatagatttgcttataagcagataattcaccatgaacattcctctttattaatgaaaacctttttgtgctgcggttcatgctttcaaactttttaaggagtttgttgaggtctgcaaaagctcctgctaaaccctgcgt---gaattttatttggggttcttctttttc---
i macFas5.chr4             I 313 C 0
s macNem1.NW_012013344v1      190426 451 +    407600 ---------------ttatttatttattt-tttactttttaaac-tt---------------aaaaaaaaatctaagaaacacacacattagcttaggcctactcggggtcaggatcatcaatatcactgttttccacgtccacatcttgtcttaccaaaatgtcttca-ggggccatagtacacaaggagatgccctctcctatgataactatactttattctcgaattccccctgaagaacctgcttaaggctctttttgaggaggtgtcactc--ttcagaaacaggtccatgatggtttgtttggttt-----ctttttttcatcatagatttgcttataagcagataattcaccatgaacattcctctttattaatgaaaacctttttgtgctggggttcatgctttcaaactttttaaggagtttgttgaggtctgcaaaagctcctgctaaaccctgcgt---gaattttatttggggttcttc---ttc---
i macNem1.NW_012013344v1   I 5 C 0
s cerAty1.NW_012003702v1       62808 455 +    463628 ---------------tttttttttttttt-tttactttttaaac-tt--------------aaaaaaaaaatctaagaaacacacacattagcttaggcctactcgggctcaggatcatcaatatcactgttttccacttccacatcttgtcttaccaaaatgtcttca-ggggccatagcacacatggagatgccctctcccatgataactatactttattctcgatttccccctgaagaacctgcttaaggctctttttgaggaggtgtcactc--ttcagaaacaggtccatgatggtttgtttggttt-----ctttttttcatcatagatttgcttataagcagataattcaccatgaacattcctctttattaatgaaaacctttttgtgctggggttcatgctttcaaactttttaaggagtttgttgaggtctgcaaaagctcctgctaaaccctgcat---gaattttatttggggttcttcttcttc---
i cerAty1.NW_012003702v1   I 9 C 0
s chlSab2.chr17             39641006 455 +  71996105 ---------------tttttttttttttt-tttactttttaaac-tt--------------aaaaaaaaaatctaagagacacacacattagcttaggcctactcggggtcaggatcatcaatatcgctgttttccacttccacatcttgtcctaccaaaatgtcttca-ggggccatagcacacatggagatgccctctcctatgataactacactttattctcgaattcctcctgaaggacctgcttgaggctctttttgaggaggtgtcactc--ttcagaaacaggtccatgatggtttgtttggttt-----ctttttttcatcatagatttgcttataagcagataattcaccatgaacattcctctttattaatgaaaacctttttgtgctgcggttcatgctttcaaactttttaaggagtttgttgaggtctgcaaaagctcctgctaaaccctgcat---gaattttatttggggttcttcttcttc---
i chlSab2.chr17            I 7 C 0
s manLeu1.NW_012101600v1       62434 451 -    115496 ------------------ttttttttttt-tttactttttaaac-tt---------------aaaaaaaaatctaagaaacacacacattagcttaggcctactcggggtcaggatcatcaatatcactgttttccacttccacgtcctgtcctaccaaaatgtcttca-ggggccatagcacacatggagatgccctctcctatgataactatactttattctcgaattccccctgaagaacctgcttaaggctctttttgaggaggtgtcactc--ttcagaaacaggtccatgatggtttgtttggttt-----ctttttttcatcatagatttgcttataagcagataattcaccatgaacattcctctttattaatgaaaacctttttgtgttgcggttcatgctttcaaactttttaaggagtttgtcgaggtctgcaaaagctcctgctaaaccctgtgt---gaattttatttggggttcttcttcttc---
i manLeu1.NW_012101600v1   I 5 C 0
s calJac3.chr4             138636626 449 - 171630274 tttgt----------ttgtgtgtttgtttgtttactttttaaac-tt---------------aaaaaaaaattttagaaacacacgcattagcctaggcctgctcagggtcaggatcatcaatatcactgttttccacttccacatcttgtcctaccaaaatgtctccagggggccacagcacacatggagatgtcaactcctctgataagttcactttcttctggaagtcctcctgaaggacctgctt-gggctcttgttgaggaggtgtcgctc--ttcagaaacaggtccatggtggtttgcctggttt-----cc-tctttcatcgtagctttgcttagcagcagagaattca-cgtgaacattcctcctcattaatgaaaacctttctgtgctggggttcatgttttcaaacattttaaggagcttcttgaggtctgcaaaagctcctgctaagccctgcacagggaattttatttgggg---------------
i calJac3.chr4             I 10 C 0
s saiBol1.JH378315            193370 451 +   1154217 tttgt----------ttatttatttgtttgtttactttttcaac-aa---------------aaaaaaaagtctaagaaagacacacattagcctaggcctgctcagggtcaggatcatcaatatcacttttttccacttccacatcttttcctaccaaaatgtctccagggggccatagcacacgtggagatgtcaactcctttgataagcacactttcttctggaag---tcctaaaggacctgcttggggctcttcttgagaaggtgtcattc--ttcagaaacaggtccatggtggtttgcctggttt-----ccttttttcatcagagatttgcttataagcagataattca-catgaacattcctccttattaatgaaaacgtttttgtgctggggttcgtgttttcaaactttttaaggagcttgttgaggtctgcaaaagctcctgctaaaccatgcacggggaattttatgtgggg---ttc---------
i saiBol1.JH378315         I 8 C 0
s aotNan1.NW_018508875v1      262466 454 +    446445 tttgt----------t----tgtttgtttgtttactttttaaactta---------------aaaaaaaaaactaagaaacacacacattagcctaggcctactcagggtcaggatcatcaatatcactgtttcccacttccacatcttttcctaccaaaatgtctccagggggccatagcacacatggagatgtcaactcctttgataagttcactttctcctggaagtcctcctgaaggacctgcttggggctcttcttgaggaggtgtcactc--ttcagaaacaggtccatggtggtttacctggctt-----ccttttttcatcatagatttgcttataagtgtataattca-catgaacattcctccttattaatgaaaaccattttgtgctggggttcatgttttcaaactttttaaggagcttgttgaggtctgcaaaatctcctgctaaaccctacacagggaattttatgtggggttcttc---------
i aotNan1.NW_018508875v1   I 8 C 0
s otoGar3.GL873550          15328759 440 -  18854210 ---------------------------tt-taaactttttaaac-ttatttgttaagaactgaaacagaaacctttg---tgtaggctttagcctaggcctacacaaagttaggatgatcaccatcactgtattccacctccacatcttgtcccactggaa-------a-------------------gagctgtcatctcctatgataacaatgccttcttctggactacttcctgaaggacctgcctgaggcttttcctggggcagtgtcactcttttcagaaatgtgttcatggtggtttgcttggtctgatgcttttatttcaccctggatctgctataaggcagataatacacaatgaccattcctctttattaataaaaatgtattaatgttgggatccatattttcaaactttttaaggagattttt--ggtgtgcaagaatctctgattagctcttggtggtgaattttcttggtggttgttctttttcttc
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=3111612.000000
s hg38.chr6_KI270758v1_alt     30661 446 +     76752 tccttcagtttcctttttttctgaccactac--ttcaactatgcattcctgtctcagttccaacaactcct-----cattagtcaattcc-aaggaactacc------tctaggagctcct-aatgccatcctcatccgtactcagtttaaagttgtttgccatctcaaccaaagccttgtagatttttgcaatctcctcatccttggcaaaccctttgaactcacagacaaacctcctgagtgtcttcttccagatgccattcacacac----tcctcggtgacatcatccccatcccaagcaaggttcttgatgtagccatagctgttgttatccttccagaattgcatcactgtcttctcagtgtcttcctgagttaccataataacatgggcaaaggccctcttcagat----agtaaaccttaaaagctgctataattccttg-atccattggttggattaaaga---------
s panPan2.chr6             140882008 444 - 173848474 --cttcagtttcctttttttctgaccactac--ttcaactatgcattcctgtctcagttccagcaactcct-----cattagtcaattcc-aaggaactacc------tctaggagctcct-aatgccatcctcatccacactcagtttaaagttgtttgccatctcaacaaaagccttgtagatttttgcaatctcctcatccttggcaaaccctttgaactcacagacaaacctcctgagtgtcttcttccagatgccattcacacag----tctttggtgacatcatccccatcccaagcaaggttcttgatgtagccatagctgttgttatccttccagaattgcatcagtgtcctctcaatgtcttcctgagttaccgtaataaccggggcaaaggccctcttcagat----agtaaaccttaaaagctgctataattccttg-atccattggttggattaaaga---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2399765 446 +   2807050 tccttcagtttcctttttttctgaccactac--ttcaactatgcattcctgtctcagttccaacaactcct-----cattagtcaattcc-gaggaactacc------tctaggagctcct-aatgccatcctcatccatactcagtttaaagttgtttgccatctcaaccaaagccttgtagatttttgcaatctcctcatccttggcaaaccctttgaactcacagacaaacctcctgagtgtcttcttccagatgccattcacacac----tccttggtgacatcatccccatcccaagcaaggttcttgatgtagccatagctgttgttatccttccagaattgcatcagtgtcttctcaatgtcttcctgagttaccgtaataacctgggcaaaggccctcttcagat----agtaaaccttaaaagctgctataattccttg-atccattggttggattagaga---------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45692796 445 - 122973662 tccttcagtttcctttttttctgaccactac--ttcaactatgcattcctgtctcagttccaacaactcct-----cgttagtcaattcc-aaggaactacc------tctaggagctcct-aatgccgtcctcatccatactcagtttaaagttgtttgccgtctcaaccaaggccttgtagatttttgcaatctactcatccttggcaaaccctttgaactcatagacaaacctcctgagtgtcttcttccagatgccattcacacac----tctttggtgacatcatccctatcccaagcaaggttcttgatgtagccatagctgttgttatccttccagaa-tgcatcagtgtcttctcaatgtcttcctgagataccgtgataacctgggcaaaggccctcctcagag----agtacaccttaaaagctgctataattccttg-atccattggttggattaaaga---------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139316745 444 - 172585720 tccttcagtttcctttttgtctcaccactac--ttcagctatgcattcctgtctcagttccaacaactcct-----cattagtcaattcc-aagaaactacc------tctaggagctcct-aatgccatcctcatctatactcagtttaaagttgtttgccatctcaaccaaagccttctagatttttgcaatctcctcatctctggcaaaccctttgaactcacagacaaacctcctgagtttcttattccagatgccgttcacacgc----tccttggtgacatcatccc--tcccaagcaaggttcttgatgtagccgtagctgttcttatccttccagaattgcatcagtgtcttctcaatgtcttcctgagttgccgtaataacgtgggcaaaggccctcctcagat----agtaaaccttaaaagctgctataattccttg-atgcattggttggattaaaga---------
i rheMac8.chr4             C 0 I 13
s macFas5.chr4             138483928 444 + 170955103 tccttcagtttcctttttttctcaccactat--ttcagctatgcattcctgtctcagttccaacaactcct-----cattagtcaattcc-aagaaactacc------tctaggagctcct-aatgccatcctcatctatactcagtttaaagttgtttgccatctccaccaaagccttgtagatttttgcaatctcctcatccctggcaaaccctttgaactcacagacaaacctcctgagtgtcttcttccagatgccgttcacacac----tccttggtgacatcatccc--tcccaagcaaggttcttgatgtagccatagctgttcttatccttccagaattgcatcagtgtcttctcaatgtcttcctgagttgccgtaataacctgggcaaaggccctcctcagat----agtaaaccttaaaagctgctgtaattccttg-atgcattggttggattaaaga---------
i macFas5.chr4             C 0 I 13
s macNem1.NW_012013344v1      190877 444 +    407600 tccttcagtttcctttttgtctcaccactac--ttcagctatgcattcctgtctcagttccaacaactcct-----cattagtcaattcc-aaggaactacc------tctaggagctcct-aatgccatccttatctatactcagtttaaagttgtttgccatctccaccaaagccttgtagatttttgcaatctcctcatccctggcaaaccctttgaactcacagacaaacctcctgagtgtcttcttccagatgccattcacacac----tccttggtgacatcatccc--tcccaagcaacgttcttgatgtagccatagctgttcttattcttccagaattgcatcagtgtcttctcaatgtcttcctgagttgccgtaataacctgggcaaaggccctcctcagat----agtaaaccttaaaagctgctataattccttg-atccattggttggattaaaga---------
i macNem1.NW_012013344v1   C 0 I 13
s cerAty1.NW_012003702v1       63263 444 +    463628 tccttcagtttcctttttttctcaccactat--ttcagctatgcattcctgtctcagttccaacaactcct-----cattagtcaattcc-aagaaactacc------tctaggagctcct-aatgccatcctcatctatactcagtttaaagttgtttgccatctcaactaaagccttgtagatttttgcaatctcctcatccctggcaaaccctttgaactcacagacaaacctcctgagtgtcttattccagatgccgttcacacgc----tccttggtgacatcatccc--tcccaagcaaggttcttgatgtagccgtagctgttcttatccttccagaattgcatcagtgtcttctcaatgtcttcctgagttgctgtaataacgtgggcaaaggccctcctcagat----agtaaaccttaaaagctgctataattccttg-atgcattggttggattaaaga---------
i cerAty1.NW_012003702v1   C 0 I 13
s chlSab2.chr17             39641461 443 +  71996105 tccttcagtttcctttttttctcaccactaa--ttcagctatgcattcctgtctcagttccaacaactcct-----cattagtcaattcc-aaggaactacc------tctaggagctcct-aatgccatccctgtctatactcaatttgaagttgtttgccgtctcaaccaaaggcttgtagatttttgcaatctcctcatccctggcaaaccctttgaactcacagac-aacctcctgagtgtcttcttccagatgccattcacacaa----cccttggtgacatcatccc--tcccaagcaaggttctcaatgtagccatagctgttcttatccttccagaattgcatcagtgtcttctcaatgtcttcctgagttgccgtaataacctgggcaaaggccctcctcagat----agtaaaccttaaaagctgctataattccttg-atccattggttggattaaaga---------
i chlSab2.chr17            C 0 I 13
s manLeu1.NW_012101600v1       62885 444 -    115496 tccttcagtttcctttttgtctcaccactac--ttcagctatgcattcctgtctcagttccaacaactcct-----cattagtcaattcc-aaggaactacc------tctaggagctcct-aatgccatcctcatccatactcagtttaaagttgtttgccatcttaaccaaagccttgtagatttttgcaatctccgcatccctggcaaaccctttgaactcagagacaaacctcctgagtgtcttcttccagatgccattcacacac----tccttggtgacatcatccc--tcccaagcaaggttcttgatgtagccatagctgttcttatccttccagaattgcatcagtgtcttctcaatgtcttcctgagttgccgtaataacctgggcaaaggccctcctcagat----agtaaaccttaaaagctgctataattccttg-atgcattggttggattaaaga---------
i manLeu1.NW_012101600v1   C 0 I 1426
s calJac3.chr4             138637075 446 - 171630274 ttcttcattttcctttttttctggcctctacctctcagctgtgcattcctgtttcagttccaacaactcct-----cattagtgaattcc-aaggcaccacc------tctaggaaggcct-aatgacgtcctcatccatactcagtttacag-ggttgaccatctcaacaaaagccatgtagatttttgccatgtcctcatccttggcaaatgctttgaactcgtggacaaacctcctgagtgtcttcttccagataccgttcacacat----tccttggtgacgtcatccc-atcccaagcaaggttcttgatgtagccatagctgttgttatccttccagaattgcatcaatgtcttctcaatgtcttccttagttactgaaataacctgggtgaaggcccttctcaaat----agtaaaccttaaaagccgctatgattccttg-atccactggttggattaaaga---------
i calJac3.chr4             C 0 I 13
s saiBol1.JH378315            193821 438 +   1154217 ttcttcatttttctttttttctggcctctac--ttcagctgtgcgttcctgtttcagtttcaacaactcct-----cattagtcaattcc-aaggaaccacc------tctaggagctcct-aatgacatcttcatccatactcagtttaaagttgttgaccatctcaacaaaagccatgtcaatttttgcaatttcctcatccttggcaaatcctttgaactcacggacaaacctcctgaacatgt-------gataccattcacacat----tccttggtgacatcatccc-atcccaagcaaggttcttgatgtagccatcgctgttgttatccttccagaattgcatcaatgtcttcccaatgtcttcctgagttactgtaataacctgggcaaaggcccttctcaaat----agtaaaccttaaaagctgctatggttccttg-atccactggttggattaaaga---------
i saiBol1.JH378315         C 0 I 17
s aotNan1.NW_018508875v1      262920 438 +    446445 ttcttcattttcctttttttctggcctctac--ttcagctatgcattcctgtttcagttccaagaactcct-----cattagtcaattcc-aaggaaccacc------tctaggagctcct-aatgacatcctcatccatactcagtttaaagttgttgaccatctcaacaaaagccatggagatttttgcaatttcctcatccttggcaaatccttagaactcatggacaaacctcctgaacgtgt-------gataccattcacacat----tccttggtgacatcatccc-atcccaagcaaggttcttgatgtagccatagctgttcttatccttccagaattgcatcagtgtcttcccaatgtcttcctgagtaactgtaataacctgggcaaaggcccttctcaaat----agtaaaccttaaaagctgctatgattccttg-atccactggttggattaaaga---------
i aotNan1.NW_018508875v1   C 0 I 13
s otoGar3.GL873550          15329199 455 -  18854210 tcctgcagtttccttttc-tcttgcctcttc--ttcagctatacattcttgttccagttccagcaactcgttagtccattagtcaattccttaggaactacctctaggtctaggagtgcctcaatgtcattctc------acccagatgaaagtcgcttgccatctcagccacagccttgttgatgtttgcaatctcctcacccttggcaaacc--ttaaagtcatggatgaatctctggaatgtctttttccagatgccattcatgcatgatgtccttggtgacatcatcca-ggcccaagaaatattcttgatgtcatcataactgctgtaatccttccagaattg------------ctcaaggttttcctcagttacagcagtagcctgggaaaaggtcttcttgagataggaagtaggccttaaaagctgctataactccttgaatctattggttgcactaagagatggtatta
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I
e panTro5.chr6             142730435 1658 - 175400573 I

a score=796512.000000
s hg38.chr6_KI270758v1_alt     31107 138 +     76752 gggagaagcaccacttcgatattgggataaagatcattaataacaggaggatgtgcaggaga-acaaataaccataaacaaaatcttgaaag---------ttatgg--tatttttcagacaatgcctctctatttctctggcatagcaa
s panPan2.chr6             140882452 138 - 173848474 gggagaagcaccacttcgatattgggataaagatcattaataacaggaggatgtgcaggaga-acaaataaccttaaacaaaatcttgaagg---------ttatgg--tattcttcaaacaatgcctctctatttctctggcatagcaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2400211 138 +   2807050 gggagaagcaccacttcgatattgggataaagatcattaataacacgaggatgtgcgggaga-acaaataaccataaacaaaatcttgaaag---------ttatgg--tattcttcagacaatgcctctctatttctctggcatagcaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45693241 139 - 122973662 gggagaagcaccacttcgatattaggataaagatcattaataacaggaggatgtgcaggagatacgaataaccataaacaaaatcttgaaag---------ttacag--tattcttcactcaatgcctctctatttccctggcatagcaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139317202 138 - 172585720 gggagaaacaccacttcaatattgggataaagatcattaataacaggaggatgtgcagaaga-actaataaccataaacaaaatcttgaaag---------ttatgg--tattcttcaaacaatgcctctctatttctctggcatagaaa
i rheMac8.chr4             I 13 C 0
s macFas5.chr4             138484385 138 + 170955103 gggagaaacaccacttcaatattgggataaagatcattaataacaggaggatgtgcagaaga-actaataaccataaacaaaatcttgaaag---------ttatgg--tattcttcaaacaatgcctctctatttctctggcatagaaa
i macFas5.chr4             I 13 C 0
s macNem1.NW_012013344v1      191334 138 +    407600 gggagaaacaccacttcaatattgggataaagatcattaataacaggaggatgtgcaggaga-actaataaccataaacaaaatcttgaaag---------ttatgg--tattcttcaaacaatgcctctctatttctctggcatagaaa
i macNem1.NW_012013344v1   I 13 C 0
s cerAty1.NW_012003702v1       63720 138 +    463628 gggagaaacaccacttcaatattgggataaagatcattaataacaggaggatgttcagaaga-actaataaccataaacaaaatcttgaaag---------ttatgg--tattcttcaaacaatgcctctctatttctctggcatagaaa
i cerAty1.NW_012003702v1   I 13 C 0
s chlSab2.chr17             39641917 138 +  71996105 gggagaaacaccacttcaatattgggataaagatcattaataacaggaggatgtgcagaaga-actaataaccataaacaaaatcttgaaag---------tgatgg--tattcttcaaacaatgcctctctatttctctggcatagaaa
i chlSab2.chr17            I 13 C 0
s calJac3.chr4             138637534 123 - 171630274 gggagaaacaccacttcg-tattgggataaagatcatcagtaacaggaggatgtgtaggagg-------------aaacaaaatcttgaaag---------gcatgg--tattcttcaaacaatgc--ctctgtttctttggcgtagcaa
i calJac3.chr4             I 13 C 0
s saiBol1.JH378315            194276 137 +   1154217 gggagaaacaccacttca-tattgagataaagatcatcagtaacaggaggatgtgtaggagg-actaataaccataaacaaaatcttgaaag---------gcacgg--tattcttcaaacaatgcctctctatttctctggcatagcaa
i saiBol1.JH378315         I 17 I 696
s aotNan1.NW_018508875v1      263371 137 +    446445 gggagaaacaccacttcg-tattgggataaagatcatcagtaacaggaggatgtgtaggaga-actaataaccataaacaaaatcttgaaag---------gcatgg--tattcttcaaacaatgcctctctatttctctggcatagcaa
i aotNan1.NW_018508875v1   I 13 C 0
s otoGar3.GL873550          15329654 140 -  18854210 gggagaaacaccacttttcaattgagatgaagaccaccgataaaaggagggtg----------tttatcaacaataagcaaaatcttgaaagaatgttgttttgttgtttattctccaaacagtacttctccattttgctggcacagcaa
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       63329 1426 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I
e panTro5.chr6             142730435 1658 - 175400573 I

a score=409922.000000
s hg38.chr6_KI270758v1_alt     31245 81 +     76752 tttaggatgtaatcatggaagaggagatgggtcatccatgatgttttattacacctgtagtgtactggcaggatatacttt
s panPan2.chr6             140882590 81 - 173848474 tttaggatgtaatcatggaagaggagatgggtcatccatgatgttttattacacctgtagtgtactggcagggtatgcttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2400349 81 +   2807050 tttaggatgtaatcatggaagaggagatgggtcatccatgatgttttattacacctgtagtgtactggcagggtatgcttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45693380 81 - 122973662 tttaggatgtaatcatggaagaggagatgggtcatccatgacgttttattacacctgtagtgtactggcagggtatgcttt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139317340 81 - 172585720 tttaggatgttatcatggaagaggagatgggtcatccatgatgttttattgcacctgtagtgtactggcagggtatgctgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138484523 81 + 170955103 tttaggatgtaatcatggaagaggagatgggtcattcatgatgttttattgcacctgtagtgtactggcagggtatgctgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      191472 81 +    407600 tttaggatgtaatcatggaagaggagatgggtcatccatgatgttttattgcacctgtagtgcaccggcagggtatactat
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       63858 81 +    463628 tttaggatgtaatcatggaagaggagatgggtcatccatgatgttttattgcacctgtagtgtactggcagggtatgctgt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39642055 81 +  71996105 tttaggatgtaatcatggaagaggagatgggtcatccatgatgttttattgcacctgtagtgtaccagcagggtatgctgt
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             138637657 81 - 171630274 tttaggatgtcatcctggaagaggagatgggtcatccatgatgttttattgcacctgtggtatactggcagggtatgcttt
i calJac3.chr4             C 0 C 0
s aotNan1.NW_018508875v1      263508 81 +    446445 tttaggatgtcatcatggaagaggagatgggtcatccatgatgttttattgcacctgtagtatactggcagggtatgcttt
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15329794 78 -  18854210 ttcaaggagacatc-tagaaga-gagctgggccatccactgctgcctatggc-tctgtagctcactggcagtgttggcttt
i otoGar3.GL873550         C 0 I 6847
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       63329 1426 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            194413 696 +   1154217 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I
e panTro5.chr6             142730435 1658 - 175400573 I

a score=14432.000000
s hg38.chr6_KI270758v1_alt     31326 6 +     76752 atatat
s panPan2.chr6             140882671 6 - 173848474 ttatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2400430 6 +   2807050 ttatat
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45693461 6 - 122973662 tcacat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139317421 6 - 172585720 gtgtgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138484604 6 + 170955103 gtgtgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      191553 6 +    407600 atatat
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       63939 6 +    463628 gtgtgt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39642136 6 +  71996105 atatat
i chlSab2.chr17            C 0 C 0
s calJac3.chr4             138637738 6 - 171630274 ttatat
i calJac3.chr4             C 0 I 1566
s aotNan1.NW_018508875v1      263589 6 +    446445 ttatat
i aotNan1.NW_018508875v1   C 0 I 2784
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       63329 1426 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            194413 696 +   1154217 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I
e panTro5.chr6             142730435 1658 - 175400573 I

a score=-2321.000000
s hg38.chr6_KI270758v1_alt     31332 3 +     76752 ata---
s rheMac8.chr4             139317427 3 - 172585720 ---gtg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138484610 3 + 170955103 ---gtg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      191559 3 +    407600 ---aca
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       63945 3 +    463628 ---gta
i cerAty1.NW_012003702v1   C 0 I 76
s chlSab2.chr17             39642142 3 +  71996105 ---aca
i chlSab2.chr17            C 0 I 2
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       63329 1426 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      263595 2784 +    446445 I
e calJac3.chr4             138637744 1566 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            194413 696 +   1154217 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e panPan2.chr6             140882677 0 - 173848474 C
e colAng1.NW_012115555v1      687892 886 -   1936607 I
e nomLeu3.chr1a             45693467 0 - 122973662 C
e gorGor5.CYUI01000036v1     2400436 0 +   2807050 C
e panTro5.chr6             142730435 1658 - 175400573 I

a score=-3703.000000
s hg38.chr6_KI270758v1_alt     31335 50 +     76752 tatatatatatatatatatatatatatatatatatatatttttttttttt
s panPan2.chr6             140882677 16 - 173848474 ----------------------------------tctttttttttttttt
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01000036v1     2400436 27 +   2807050 -----------------------tcttttttttttttttttttttttttt
i gorGor5.CYUI01000036v1   C 0 I 1
s nomLeu3.chr1a             45693467 24 - 122973662 --------------------------tctttttttttttttttttttttt
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             139317430 25 - 172585720 tgtgtgtgtgtatatatatata-------------------------ttt
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             138484613 25 + 170955103 tgtgtgtgtgtgtAAATATATA-------------------------ttt
i macFas5.chr4             C 0 I 3
s macNem1.NW_012013344v1      191562 49 +    407600 tatatatatacatatacatatacaattatatatatatatat-tttttttt
i macNem1.NW_012013344v1   C 0 I 3
s chlSab2.chr17             39642147 50 +  71996105 tatatatacacatatataaatatatatacacacacacacatatgtatatT
i chlSab2.chr17            I 2 I 3
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       63329 1426 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      263595 2784 +    446445 I
e calJac3.chr4             138637744 1566 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            194413 696 +   1154217 I
e cerAty1.NW_012003702v1       63948 76 +    463628 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I
e panTro5.chr6             142730435 1658 - 175400573 I

a score=1700072.000000
s hg38.chr6_KI270758v1_alt     31385 581 +     76752 atggaatctagctctgtcttccagactggaatgcagtggcatgatctcggctcactgcaagctccacctcccagattcacaccattctcctgcctcagcctcctgagtagctgggactacaggtgcccaccaccacacccggctaactttttgtatttttagtagagacagggtttcactgtgttagccaagatggtcttgatctcctgacctcgtgatccgcccacctcggcctcccaaagtgctgggattacaggcgtgagccaccgtatctggcctctttttatattcttaaaggaaggtcctggggttttcaccttgctggatcacaaagggctttaatttgtagcctgcaacattgccctcaagcaagaccgttatctgtacttaaaagccttgaaagctagcattgacttggcctccttatgggttaaattcctttcaggcaGTgagaacaaagacacaacataccagaatttctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcagaaaagatctaaaatcaacatcctaacatcacaatt
s panPan2.chr6             140882694 580 - 173848474 acggagtctcgctctgtcttccaggctggaatgcagtggcgcgatctcggctcactgcaagctccacctcccaggttcatgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccaccaccacgcccagctaactttttgtatttttagtagagacagggtttcactgtgttagccaggatggtcttgatctcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggcgtgagccaccgtatctggcctctttttatattcttaaaggaaggtcctggggttttcaccttgctggatcacaaagggctttaatttgtagcctgcaacattg-cctcaagtaagaccgttatctgtacttaaaagccttgaaagctagcattgacttggcctccttatgggttaaattcctttcaggcaatgagaacaaagacacaacataccagaatttctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcgggaaagatctaaaatcaacaccctaacatcacaatt
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01000036v1     2400464 581 +   2807050 atggagtctcgctctgtcttccaggctggaatgcagtggtgtgatttcggcttactgcaagctccacctcccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggtgcccgccaccacgcccggctaactttttgtatatttagtagagacagggtttcactgtgttagccaggatggtcttgatctcctgacctcgtgatctgcccacctcggcctcccaaagtgctgggattacaggtgtgagccaccgtatctggcctctttttatattcttaaaggaaggtcctggggttttcaccttgccggatcacaaagggctttaatttgtagcctgcaacattgccctcaagcaagaccgttatctgtacttaaaagccttgaaagctagcattgacttggcctccttatgggttaaattcctttcaggtaatgagaacaaagacacaacataccagaatttctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaatcaacaccctaacatcacaatt
i gorGor5.CYUI01000036v1   I 1 C 0
s nomLeu3.chr1a             45693492 580 - 122973662 acagagtcttgctctgtcatccaggctggaatgcagtggcgcgatttcggctcactgcaagctccaattcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggtgcctgccaccaagcccagctaactttttgtatttttagtacagacaggatttcaccgggttagccaggatggtcttgatctcctgacctcgtgatctgcccacctcggcctcccaaagtgctgagattataggcgtaagccactgtatctggcctctttttatattctt-aaggaaggtcctggggttttcaccttgccagatcacaaagggctttaatttgcagcctgcaacattgccctcaagcaagaccattatctgtacttaaaagccttgaaagctagcattgacttggcctccttatggattaaattcctttcaggcaatgagaacaaagacaaaacataccagaatctctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaatcgacaccctaatatcacaatt
i nomLeu3.chr1a            I 1 C 0
s rheMac8.chr4             139317458 559 - 172585720 acggattctcactctgtcgtacaggctggactgcagtggcatgatctgggctcactgcaagctccac--cccaggttcatgccattctcctgcctcagcctcccgagtaactgggactacaggcgcccaccaccacgcctggctaattttttgtgtttttagtagagacagggtttcaccgtgttagccagcatggtctcgatctcctgacctcatgatccacccgtctcggcctcctaaagtgctgggattacaagcgtgagccactgtgtcaggtctctttttatattcttaaaggaaggtcctggggttttcaccatgccagatcacaacgggctttaattcgtagcctgc-------------------aacattatctgtacttaaaagccttgaaagctagcattgacttggcctcc-tgtggattaaattcctttcaggcaatgagaccaaagacacaaggtaccagaatctctgggacacatttaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggagagatctaaaatcaacaccctaatatcacaatt
i rheMac8.chr4             I 3 C 0
s macFas5.chr4             138484641 559 + 170955103 acggattctcactctgtcgtccaggctggactgcagtggcatgatctcggctcactgcaagctccac--ctcaggttcatgccattctcctgcctcagcctcccgagtaactgggactacaggtgcctgccaccacgcctggctaattttttgtgtttttagtagagacagggtttcaccgtgttagccagcatggtctcgatctcctgacctcatgatccaccctcctcggcctcctaaagtgctgggattacaagcgtgagccactgtgtcaggtctctttttatattcttaaaggaaggtcctggggttttcaccatgccagatcacaacgggctttaattcatagcctgc-------------------aacattatctgtacttaaaagccttgaaagctagcattgacttggcctcc-ggtggattaaattcctttcaggcaatgagaacaaagacacaacttaccagaatctctgggacacatttaaagcagtgtgtaaagggaaatttatagcactaaatgcccacaagagaaagcaggagagatctaaaatcaacaccctaatatcacaatt
i macFas5.chr4             I 3 C 0
s macNem1.NW_012013344v1      191614 579 +    407600 atggattctcactgtgtcgtccaggctggactgcagtggcacgatcttggctcactacaagctccac--cccaggttcacgccattctcctgcctcagcctcccgagtaactgggactacaggtgcccgccaccactcccggctaattttttgtgtttttagtagagacagggtttcaccgtgttagccaacacggtctcgatctcctgacctcatgatccacccgtctcggcctcctaaagtgctgggattacaagcatgagccactgtgtcaggtctctttttatattcttaaaggaaggtcctggggttttcaccatgccagatcacaacgggctttaatttgtagcctgcatcattgccctcgagcaagaccattatctgtacttaaaagccttgaaagctagcattgacttggcctccttgtggattaaattcctttcaggcaatgagaacaaagacacaaggtaccagaatctctgggacacatttaaagcagtgtgtaaagggaaatttatagcactaaatgcccacaagagaaaacaggagagatctaaaatcaacaccctaacatcacaatt
i macNem1.NW_012013344v1   I 3 C 0
s cerAty1.NW_012003702v1       64024 578 +    463628 acggattctcactctgtcgtccaggctggactgcagtggcatgatctcggctcactgcaagctccac--cccaggttcatgccattctcctgcctcagcctcccgagtaactgggactacaggcacccgccaccacacctggctaattttttgtgtttttagtagagacagggtttcaccgtgttagccagcatggtctcgatctcctgacctcatgatgcacccgtctcggcctcctaaagtgctgggattacaagcgtgagccactgtgtcaggtctctttttatattcttaaaggaaggtcctggggttttcaccatgccagatcacaacgggctttaattcgtagcctgcaacattgccctcaagcaagaccattatctgtacttaaaagccttgaaagctagcattgacttggcctcc-tgtggattaaattcctttcaggcaatgagaacaaagacacaatttaccagaatctctgggacacatttaaagcagtgtgtaaagggaaatttatagcactaaatgcccataagagaaagcaggagagatctaaaatcaacaccctaatatcacaatt
i cerAty1.NW_012003702v1   I 76 C 0
s chlSab2.chr17             39642200 565 +  71996105 acggattctcactctgtcgtccagggtggactgcagtggcacgatctcggctcactgcaagctccac--cccaggttcacgccattctcctgcctcagcctcccgagtaactgggactacaggtgcccgccaccacacctggctaattttttgtgtttttagtagagacagggtttcactgtgttagccagcacggtctcaatctcctgacctcatgatccacctgccacggcctcctaaagtgctgggG--------------CACTGTGTCAGGTCTCTTtttatattcttaaaggaaggtcctggggttttcaccatgccagatcacaaagggctttaattcgtagcctgcaacattgccctcaagcaagactattatctgtacttaaaagccttgaaagctagcattgactcggcctccttgtggattaaattcctttcaggcaatgagaacaaagacacaacttaccagaatctctgggacacatttaaagcagtgtgtaaagggaaatttataacagtaaatgcccataagagaaagcaggagagatctaaaatcaacaccctaacatcacaatt
i chlSab2.chr17            I 3 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       63329 1426 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      263595 2784 +    446445 I
e calJac3.chr4             138637744 1566 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            194413 696 +   1154217 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I
e panTro5.chr6             142730435 1658 - 175400573 I

a score=2202543.000000
s hg38.chr6_KI270758v1_alt     31966 601 +     76752 aaaagaactagag----aagggcaaacaaattcaaaagctagcagaaggcaagaaataactaagatcagagcataactgaaggagatagagacatgaaaaaccctt--c-aaaaaatcaatgaatccaggagctgg----gtttttttttttttgtaaaaaaagatcaatagatagaccgctaaccagactaataaagaagaaatgagagaagaatcaaatagatgcaataaaaa-tgataaaggggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctgatagaacagactttaaaccagcaaaaatcaaaagagacaaaagagggcattacacaatggtaaagggattaattcaacaaaaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagttcttagagatctacaaagagacttagactcccacataataatagtgggagacttcaacactccactgtcaatattagacagatcaacaagacagaaaattaacaaggatattcaggacttgaacttagctctggaccaagcagacctaatagacatctac
s panTro5.chr6             142732093 592 - 175400573 aaaagaactagag----aagggcaaacaaattcaaaagctag---aaggcaagaaataactaagatcagagcagaactgaaggagatagagacatgaaaaaccctt--c-aaaaaatcaatgaatccgggagctgg----gtttttttttttttgtaaaaaaagatcaatagatagaccgctaaccagactaataaggaagaaatgagacaagaatcaaatagatgcaataaaaaatgataaaggggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctgataaaaca--ctttaaaccagcaaaaatcaaaagagacaaaggagggcat-----aatggtaaaggtattaattcaacaaaaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagttcttagagacctacaaagagacttagactcccacataataatagtgggagacttcaacactccgctgtcaatattagactgatcaacaagacagaaaattaacaaagatattcaggacttgaactcagctctgcaccaggcagacctaatagacatctac
i panTro5.chr6             I 1658 C 0
s panPan2.chr6             140883274 596 - 173848474 aaaagaactagag----aagggcaaacaaattcaaaagctagcagaaggcaagaaataactaagatcagagcataactgaaggagatagagacatgaaaaaccctt--c-aaaaaatcaatgaatccaggagctgg---------tttttttttgtaaaaaaagatcaatagatagaccactaaccagactaatacagaagaaatgagagaagaatcaaatagatgcaataaaaa-tgataaaggggatatcaccgctgatcccacagaaatacaaactaccatcagagaatactataaacacctctgatagaacagactttaaaccagcaaaaatcaaaagagacaaaggagggcattacacaatggtaaagggattaattcaacaaaaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagttcttagagatctacaaagagacttagattcccacataataatagtgggagacttcaacactccactgtcaatattagacagatcaacaagacagaaaattaatgaagatattcaggacttgaacttagctctggaccaagcagacctaatagacatctac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2401045 599 +   2807050 agaagaactagag----aagggcaaacaaattcaaaagctagcagaaggcaagaaataagtaagatcagagcagaactgaaggagatagagacacgaaaaaccctt--c-aaaaaatcaatgaatccaggagctggttttttttttttttttttgtaaaaaaagatcaatagatagactgctaaccagactaataaagaagaaatgagacaagaatcaaatagatgcaataaaaaatgataaaggggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctgataaaaca--ctttaaaccagcaaaaatcaaaagagacaaaggagggcat-----aatggtaaagggattaattcaacaaaaagaactaactatcctaaatatatacgcaaccaatacaggagcacccagattcataaagcaagttcttagagacctacaaagagacttagactcccacataataatagtgggagacttcaacactctgctgtcaatattagactgatcaacaagacagaaaattaacaaagatattcaggacttgaactcacctctgcaccaggcagacctaatagacatctac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45694072 596 - 122973662 aaaagaactagag----aagggcaaacaaattcaaaagctagcagaaggcaagaaataaccaagatcagagcagaactgaaggagatagagacacgaaaaactctt--caaaaaaatcaatgaatccaggagctgt-----------tttttttttaaaaaaagatcaatagatacaccgctaaccagactaataaagaagaaatgagagaagaatcaaatagatgcaataaaaaatgataaaggggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctgataaaacagtctttaaaccagcaaagatcaaaagagacaaaggaggtcattacataatggtaaagggatcaattcaacaaaaagagctaactatcctgaatatatatgcacccaatacaggagcacccagattcataaagcaagttcttagggacctaaaaagagacttagactatcacataataatagtgggagacttcaacactccactgtcaatattagacagatcaacaagacagaaaattaacaaagatattcaggacttgaacttagctctggaacaagcggacctaatagacatctac
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139318017 595 - 172585720 aaaagaactagagaagcaagggcaaacaaattcaaaagctaacagaaggtaagaaataactaagatcagagaagaactgaaggagatagagacacgaaaaaccctt--a-aaaaaatcagtgaatccagaagctgg----------ttttttt----aaaaaagatcaatggatagactgctgactagactaacaaagaagaaaagagagaagaatcaaatagataccataaaatacaataaaggggatatcaccaccgaccccacataaatacaaactaccatcagagaatattataaacacctctgataaaacagactttaaaccagcaaagatcaaaagagacaaaggagggcattacataatggtaaagggatcaattcgacaaaaagagctaactatcctaaacatatatgcacccaatacaggagcacccagatttataaagcaagttcttagagacctacaaagagacttagactcccacataataatagtgggagactttaacgctccactgtcaatattagacagatcaacaaggcagaaaattaacaaggatatccaggacttg-acttagctctggaccaagcagacctaatagacatctac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138485200 598 + 170955103 aaaagaactagagaagcaagggcaaacaaattcaaaagctaacagaaggtaagaaataactaagatcagagaagaactgaaggagatagagacacgaaaaacccttaaa-aaaaaatcagtgaatccagaagctgg----------ttttttt---aaaaaaagatcaatggatagactgctgaccagactaacaaagaagaaaagagagaagaatcaaatagatacaataaaatacgataaaggggatatcaccaccgaccccacagaaatacaaactaccatcagagaatactataaacacctctgataaaacagactttaaaccagcaaagatcaaaagagacaaaggagggtattacataatggtaaagggatcaattcgacaaaaagagctaactatccgaaacatatatgcacccaatacaggagcacccagattcataaagcaagttcttagagacctacaaagagacttagactcccacataataatagtgggagactttaacactccactgtcaatattagacagatcaacaaggcagaaaattaacaaggatatccaggacttg-acttagctctggaccaagcagacctaatagacatctac
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      192193 597 +    407600 aaaagaactagagaagcaagggcaaacaaattcaaaagctaacagaaggtaagaaataactaagatcagagaagaactgaaggagatagagacacgaaaaacccttaaa-aaaaaatcagtgaatccagaagctgg----------ttttttt----aaagaagatcaatggatagactgctgaccagactaataaagaagaaaagagagaagaatcaaatagataccataaaatacaataaaggggatatcaccaccgaccccacataaatacaaactaccatcagagaatattataaacacctctgataaaacagactttaaaccagcaaagatcaaaagagacaaaggagggcattacataatggtaaagggatcaattcgacaaaaagagctaactatcctaaatatacatgcacccaatacaggagcacccagattcataaagcaagttcttagagacctacaaagagacttagactcctacataataatagtgggagactttaatactccactgtcaatattagacagatcaacaagacagaaaattaacaaggatatccaggacttg-acttagctttggaccaagcagacctaatagacatctac
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       64602 596 +    463628 aaaagaactagagaagcaagggcaaacaaattcaaaagctaacagaaggtaagaaataactaagatcagagaagaactgaaggagatagagacacgaaaaacccttaaa-aaaaaatcagtgaatccagaagctgg----------ttttttt---taaaaaagatcagtggatagactgctgaccagactaacaaaga--aaaaaagagaagaatcaaatggatacaataaaatacgataaaggggatatcaccaccgaccccacataaatacaaactaccatcagagaatattataaacacctctgataaaacagactttaaaccagcaaagatcaaaagagacaaaggagggcattacataatggtaaagggatcaattcaacaggaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacttacaaagagacttagactcccacataataatagtgggagacttcaacgctccactgtcaatattagacagatcaacaagacagaaaattaacaaggatatccaggacttg-acttagctctggaccaagcagacctaatagacatctac
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39642765 600 +  71996105 aaaagaactagagaagcaagggcaaacaaattcaaaagctaacagaaggtaagaaataactaagatcagagaagaactgaaggagatagagacacgaaaaaccctt-aa-aaaaaatcagtgaatccagaagctgg----------ttttttttaaaaaaaaagatcaatagatagactgctgaccagactaataaagaagaaaagagagaagaatcaaatagatacaataaaacatgataaaggggatatcaccaccgaccccacagaaatacaaactaccatcagagaatattataaacacctctgataaaacagactttaaatcagcaaagatcaaaagagacaaaggagggcattacataatggtaaagggatcaattcaacaaaaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagttcttagagacctacaaagagacttagactcctacataataatagtgggagactttaatactccactgtcaatattagacagatcaataagacagaaaattaacaaggatatccaggacttg-acttagctttggaccaagcagacctaatagacatctac
i chlSab2.chr17            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       63329 1426 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      263595 2784 +    446445 I
e calJac3.chr4             138637744 1566 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            194413 696 +   1154217 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1292054.000000
s hg38.chr6_KI270758v1_alt     32567 273 +     76752 agaactctccaccccaaatcaacagaatata--catacttctcagcaccacatcgcacttgttctaaaattgaccacataattggaagtaaaacactcctcagcaaatgcaaaagaatggaaatcataaca----gtttctcagaccacagtgcaatcaaattagaactcaggattatgaaagtcactcaaaaccacacaaatacatgcaaactgaacaacctgctcctgaatgactactgggtaaataacaaaacgaagacaggaataaagacattct
s panTro5.chr6             142732685 276 - 175400573 agaactctccaccccaaatcaacagaaaata--cattcttctcagcacctcatcgcacttgttctaaaattgaccacataattggaagtaaaacactcctcagcaaatgcaaaagaatggaaatcataacaaatagtttctcagaccacagtgcaatcaaattagaactcaggattatgaaactcactcaaaaccacacaactacacgcaaactgaaca-cctgctcctgaatgactactcggtaaataacaaaacgaagacagaaataaagacattct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140883870 274 - 173848474 agaactctccaccccaaatcaacagaatata--cattcttctcagcaccacatcgcacttgttctaaaattgaccacataattggaagtaaaacactcctcagcaaatgcaaaagaatggaaatcataacaaatagtttctcagaccacagtgcaatcaaattagaactcaggattatgaaactcactcaaaaccacacaactatatgcaaactgaacaacctgctcctgaatg---actgggtaaattacaaaacgaagacaggaataaagacattct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2401644 276 +   2807050 agaactctccaccccaaatcaacagaaaata--cattcttctcagcacctcatcgcacttgttctaaaattgaccacataattggaagtaaaacactcctcagcaaatgcaaaagaatggaaatcataacaaatagtttctcagaccacagtgcaatcaaattagaactcaggattatgaaactcactcaaaaccacacaactacacgcaaactggacaacctgct-ctgaatgactactcggtaaataacaaaacgaagacagaaataaagacattct
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45694668 275 - 122973662 agaactctccaccccaaatcaacagaatata--cattcttctcagcaccacatcgcccttgttctaaaattgaccac--aattggaagtaaaacactcctcagcaaatacaaaagaatggaaatcataataaatagtttctcagaccacagtgcaatcaaattagaactcaggattatgaaactcactcaaaaccgcacaaccacatgcaaactgaacaacctgctcctgaacgactactgggtaaataacaaaatgaagaaaggaatacagacattct
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139318612 277 - 172585720 agaaccctccaccccaaatcaacagaatata--cattcttctcagcaccacatcgcacttattctaaaattgaccacagaattggaagtaaaacactcctcagcaaatgcaaaagaatggaaatcataacaaatagtttctcagaccacagtgcaatcaaactagaactcaggattatgaaactcactcaaaactgcacaactgcatgcaaactgaacaacctggtccagaatgactaccgggtaaataagaaaatgaagacaggaataaagacgttct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138485798 277 + 170955103 agaaccctccaccccaaatcaacagaatata--cattcttctcagcaccacatcgcacttattctaaaattgaccacagaattggaagtaaaacactcctcagcaaatgaaaaagaatggaaatcataacaaatagtttctcagaccacagtgcaatcaaattagaactcaggattatgaaactcactcaaaactgcacaactgcatgcaaactgaacaacctggtcctgaatgactacggggtaaataacaaaatgaagacaggaataaagacgttct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      192790 279 +    407600 agaactctccaccccaaatcaacagaatataacaattcttctcagcaccacattgcacttattctaaaattgaccacagaattggaagtaaaacactcctcagcaaatgaaaaagaatggaaatcataacaaatagtttctcagaccacagtgcaatcaaattagaactcaggattatgaaactcactcaaaactgcacaactgcatgcaaactgaacaacctggtcctgaatgactaccgggtaaataacaaaatgaagacaggaataaagacgttct
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       65198 277 +    463628 agaaccctccaccccaaatcaacagaatata--cattcttctcagcaccacatcgcacttattctaaaattgaccacagaattggaagtaaaacactcctcagcaaatgcagaagaacggaaatcataacaaatagtttctcagaccacagtgcaatcaaactagaactcaggattatgaaactcactcaaaactgcacaactgcatgcaaactgaacaacctggtccagaatgactaccgggtaagtaacaaaatgaagacaggaataaagacgttct
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39643365 277 +  71996105 agaactctccaccccagatcaacagaatata--cattcttctcagcaccacattgtacttattctaaaattgaccacagaattggaagtaaaacactcctcagcaaatgaaaaagaatggaaatcataacaaatagtttctcagaccacagtgcaatcaaattagaactcaggattatgaaactcactcaaaactgcacaactgcatgcaaactgaacaacctggtccagaatgactaccgggtaaataacaaaatgaagacaggaataaagacgttct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       64755 277 -    115496 agaactctccaccccaaatcaacagaatata--cattcttctcagcaccacatcgcacttattctaaaattgaccacagaattggaagtaaaacactcctcagcaaatgcaaaagaatggaaatcataacaaatagtttctcagaccacagtgcaatcaaattagaactcaggattatgaaactcactcaaaactgcacaactgcatgcaaactgaacaacccggtcctgaatgactaccgggtaaataacaaaatgaagacaggaataaagacgttct
i manLeu1.NW_012101600v1   I 1426 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      263595 2784 +    446445 I
e calJac3.chr4             138637744 1566 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            194413 696 +   1154217 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1205423.000000
s hg38.chr6_KI270758v1_alt     32840 162 +     76752 ttaaatttccactcttagccttactttttgtgtgtctgcatccttgatctctatggccacgagacaacaaacctcaggtcaccccagacaaacgaggctgcttcaatcccacttatatgaggtgtctaggtagccaatctcatagaaacagagaataggttg
s panTro5.chr6             142732961 162 - 175400573 ttaaatttccactcttagcctcactttttgtgtgtctgcatccttggtctccatggccacgtgacaacaaacctcaggtcaccccagacaaacgaggctgcttcaatcccacttatatgaggtgtctacgtagccaatctcatagaaacagagaataggttg
i panTro5.chr6             C 0 I 3211
s panPan2.chr6             140884144 162 - 173848474 ttaaatttccactcttagcctcactttttgtgtgtctgcatccttgatctccatggtcacgagacaacaaacctcaggtcaccccagacaaacgaggctgcttcaatcccacttatatgaggtgtctaggtagccaatctcatagaaacagagaataggttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2401920 162 +   2807050 ttgaatttccactcttagcctcactttttgtgtgtctgcatccttggtctccatggccacgagacaacaaacctcaggtcaccccagacaaacgaggctgcttcaatcccacttatatgaggtatctaggtagccaatctcatagaaacagagaataggttg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45694943 160 - 122973662 ttaaatttccactc--agcctcactttttgtgtgtctgcatccttgatctccatggccatgagacaacaaacctcaggacaccccagacaaacgaggctgcttcaatcccacttatatgaggtgtctaggtagccaatctcatagaaacagagagtaggttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139318889 162 - 172585720 ttaaatttccactcttagcctcactttttgtgtgtctgcatcctcgatctccatggccatgagacaaggaacctcaggtcaccccagacaaatgaggctgcttcaatcccacttatacgagatgtctaggtagccagtctcatagaaacagagaataggttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138486075 162 + 170955103 ttaaatttccactcttagcctcactttttgtgtgtctgcatcctcgatctccatggccacgaaacaacgaacctcaggtcaccccagacaaatgaggctgcttcaatcccacttatatgagatgtctaggtagccagtctcatagaaacagacagtaggttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      193069 162 +    407600 ttaaatttccactcttagcctcactttttgtgtgtctgcatcctcgatctccatggccacgaaacaacgaacctcaggtcaccccagacaaatgaggctgcttcaatcccacttatacgagatgtctaggtagccagtctcatagaaacagagagtaggttg
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       65475 162 +    463628 ttaaatttccactcttatcctcactttttgtgtgtctgcatcctcgatctccatggccacgaaacaacgaacctcaggtcaccccagacaaatgaggctgcttcaatcccacttatatgaggtgtctaggtagccagtctcatagaaacagacagtaggttg
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39643642 162 +  71996105 ttaaatttccactcttagcctcactttttgtgtgtctgcatcctcgatctccatggccatgagacaacgaacctcaggtcaccccagacaaaccaggctgcttcaatcccacttatatgaggtgtctaggtagccagtctcatagaaacagagagtaggttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       65032 162 -    115496 ttaaatttccactcttagcctcactttttgtgtgtctgcatcctcgatctccatggccacaaaaaaacgaacctcaggtcaccccagacaaatgaggctgcttcaatcccacttatatgaggtgtctaggtagccagtctcatagaaacagagagtaggttg
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138639310 160 - 171630274 ttacattttcactcttaatctcactttttgtgtgtctgcatccttggtctccatggctgtgagatagtgattctcaggtcaccccagac-aatgaggccacttcaatcccacttatatgaggtgtctag-tagccagtcccatagaaacagagagtaggttg
i calJac3.chr4             I 1566 C 0
s saiBol1.JH378315            195109 160 +   1154217 ttaaattttcactcttaatctcactttttgtgtgtctgcatttttggtctccatgaccatgagataataatcctcaggtcacccca-ac-gacgaggccacttcaatcccacttacatgaggtgtctagatagccagtctcatagaaacagagagtaggttg
i saiBol1.JH378315         I 696 C 0
s aotNan1.NW_018508875v1      266379 160 +    446445 ttaaattttcactcttaatctcactttttgtgtgtctgcatccttggtctccatggccatgagataatgatcctcaggtcaccccaaac-aacgaggccacttcaatcccacttgtatgaggtgtctag-tagccagtctcatagaaacagtgagtaggttg
i aotNan1.NW_018508875v1   I 2784 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=1265770.000000
s hg38.chr6_KI270758v1_alt     33002 191 +     76752 gtggttgccagagactgggggcaaggtaaatgggggagttactgttcaaccaatataacattttagttatgcaagatgaataagttctagagatctactatacaacattgtgcctatagttaacaatactgtgttgt--agttaaaaacttgtaaagaggg-tatatttcatgtaaggtgttcttatc---a--caaCA
s panTro5.chr6             142736334 191 - 175400573 gtggttgccagagactgggggcaagataaatgggggagttactgttcaacaaatataacattttagttatgcaagatgaataagttctagagatctactatacaacattgtgcctatagttaacaatactgtgttat--agttaaaaacttcttaagaggg-tatatttcatgtaaggtgttcttatc---a--caaca
i panTro5.chr6             I 3211 C 0
s panPan2.chr6             140884306 191 - 173848474 gtggttgccagagactgggggcaaggtaaatgggggagttactgttcaacaaatataacattttagttatgcaagatgaataagttctagagatctactatacaacattgtgcctatagttaacaatactgtgttat--agttaaaaacttcttaagaggg-tatatttcatgtaaggtgttcttatc---a--caaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2402082 195 +   2807050 gtggttgccagagactgggggcaaggtaaatgggggagttactgttcaaccaatataacattttagttatgcaagatgaataagttctagagatctactatacaacattgtgactatagttaacaatactgtgttgt--agttaaaaacttcttaagagggttatatttcatgtaaggtgttcttatcacaa--caaCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45695103 191 - 122973662 gtggttgccagagactgggggcaacgtaaatgggggagttactcttcaacaaacacaacattttagtcatgcaaggtgaataagttctagagatctactatacaacattgtgcctatagttaacaatacggtgttat--agttaaaaacttgtaaagaggg-tatatatcatgtaaggtgtccttatc---a--caaca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139319051 194 - 172585720 gtggttgccagagactgggggcaaggtaaatgggggagtcactgttcaacaaatataacattttagttacgcaagatgaataagttctagagatagactatacaacattgtgcctatagttaacaatactgtgttat--agttaaaaacttataaagaggg-tatatttcatgtaatgtgttcttatcacaa--taata
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138486237 194 + 170955103 gtggttgccagagactgggggcaaggtaaatgggggagtcactgttcaacaaatataacattttagttatgcaagatgaataagttctagagatagactatacaacattgtgcctatagttaacaatactgtgttat--agttaaaaacttataaagaggg-tatatttcatgtaatgtgttcttatcacaa--taaTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      193231 194 +    407600 gtggttgccagagactgggggcaaggtaaatgggggagtcactgttcaacaaatataacattttagttacgcaagatgaataagttctagagatagactatacaacattatgcctatagttaacaatactgtgttgt--agttaaaaacttataaagaggg-tatatttcatgtaatgtgttcttatcacaa--taaTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       65637 194 +    463628 gtggttgccagagactgggggcaaggtaaatgggggagtcactgttcaacaaatataacattttagttatgcaagatgaataagttctagagatagactatacaacattgtgcctatagttaacaatactgtgttat--agttaaaaacttataaaaaggg-tatatttcatgtaatgtgttcttatcacaa--taaTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39643804 193 +  71996105 gtggttgccagagactgggggcaaggtaaatgggggagttactgttcaacaaatataacattttagttatgcaagatgaataagttctagagatagactatacaacattgtgcctatagttaacaatactgtgttat--agtt-aaaacttataaagaggg-tatatttcatgtaatgtgttcttatcacaa--taaTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       65194 194 -    115496 gtggctgccagagactgggggcaaggtaaatgggggagtcactgttcaacaaatataacattttagttatgcaagatgaataagttctagagatagactatacaacattgtgcctatagttaacaatactgtgttat--agttaaaaacttataaagaggg-tatatttcgtgtaatatgttcttatcacaa--taaTA
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138639470 132 - 171630274 gtggttgccaggggttggggacagggtaaatgggggagttactgttcgacaa-----------------------------------------------------------gcctatggttaacaatactgtataatacacttaaaaaatggttaagaggg-tatatttcatgtaatgtgaccttatcacaa-------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            195269 190 +   1154217 gttgttgccaggggctggggacagggtaaat-ggggagttactactcaacaagtataacattttagttgtgcaagaggaataagttctagagatctactatacaacaatgtgcctatagttaacaatactgtgttatacacttaaaaaattgttaagaggg-tatatttcatgtaaggtgtccttatcacaa-------
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      266539 193 +    446445 gtggttgccaggggctggggacagggtaaatgggggagttactgttcaacaagtataatattttagttatgcaagaggaataagttctagagatctactatacaacaatgtgcctgtagttaacgatactatgttatacacttgaaaaatcgttaagaggg-tttatttcacgtaaggtgtccttatcacaata-----
i aotNan1.NW_018508875v1   C 0 I 9
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=58181.000000
s hg38.chr6_KI270758v1_alt     33193 13 +     76752 CAATGAAATAAAT
s panTro5.chr6             142736525 13 - 175400573 caaTGAAATAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140884497 13 - 173848474 caatgaaataaat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2402277 13 +   2807050 CAATGAAATAAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45695294 13 - 122973662 caatgaaataaat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139319245 13 - 172585720 caatgaaataaac
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138486431 13 + 170955103 CAATGAAATAAAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      193425 13 +    407600 CAATGAAATAAAC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       65831 13 +    463628 CAATGAAATAAAC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39643997 13 +  71996105 CAATGAAATAAAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       65388 13 -    115496 CAATGAAATAAAC
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138639602 11 - 171630274 taaTACAATTG--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            195459 11 +   1154217 taaTACAATTG--
i saiBol1.JH378315         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      266732  9 +    446445 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=4242302.000000
s hg38.chr6_KI270758v1_alt     33206 558 +     76752 TGGAAAATGAAGGTGgtccagaatttatcattgttaccagcaagaggggtatttcaatacaaactactccgtcaataccagaggcCATGACTCTccttccagagcttttaattaagacccaggtaggtctctgttcctacaaatgtcagtgagagattcagccctgaacttcagtacttgctggcccagctccctggcctccttctc-aggtggcttcaggagcaggcacatgtgaaaacggggagacccaccttgtgctcgaCAGACCCAGGCTGAAGgcagttctccgtgtcctgaacacaagcaacatggaggagtcctcattctgcctttggagtttggggcctggctcatagctc-agtgctgcaccacagctcaagaaatatcttgtggggaaatcacgccatgaatttgagaatttgagaacctcaaatatctaatttc-ttagtctgtccctgtgtcccttgcttggtttccctttctccagcagattccctcctgagcccatgacacctcttctgtatgaacaatgaattggcaaatgccccatgggtggca
s panTro5.chr6             142736538 559 - 175400573 TGGAAAATGAAGGTGgtccagaatttatcattgttaccagcaagagggttatttcaatacaaactactccgtcagtatcagaggcCATGACTCTccttccagagcttttaattaagacccaggtaggtctctgttcctacaaatgtcagtgagagattcagccctgaacttcagtacttgctggcccagctccctggcctccttctc-aggtggcttcaggagcgggcacatgtgaaaatggggagacccaccttgtgCCCAGCAGACCCAGGCTGAAGgcagttctctgtgtcctgaacacaagcaacatggaggaggcctcattctgcctttggggtttggggcctggctcatagctc-attgctacaccacagctcaagaaatatcttgtggggaaatctggccgtgaacttgagaatttgagaacctcaaatatctaatttcattattcagtccctgtgtcccttgcttggtttccctttctccagcagattccctcctgagcccatgacacctcttctgtatgaacaatgaattggcaaatgccccatgggtggca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140884510 559 - 173848474 tggAAAATGAAGGTGgtccagaatttatcattgttaccagcaagagggttatttcaatacaaactactccgtcagtatcagaggcCATGACTCTccttccagagcttttaattaagacccaggtaggtctctgttcctacaaatgtcagtgagagattcagccctgaacttcagtacttgctggcccagctccctggcctccttctc-aggtggcttcaggagcgggcacatgtgaaaatggggagacccaccttgtgCCCAGCAGACCCAGGCTGAAGgcagttctctgtgtcctgaacacaagcaacatggaggaggcctcattctgcctttggggtttggggcctggctcatagctc-attgctgcaccacagctcaagaaatatcttgtggggaaatctggccgtgaacttgagaatttgagaacctcaaatatctaatttcgttattcagtccctgtgtcccttgcttggtttccctttctccagcagattccctcctgagcccatgacacctcttctgtatgaacaatgaattggcaaatgccccatgggtggca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2402290 558 +   2807050 TGGAAAATGAAGGTGgtccagaatttatcattgttaccagcaagagggttatttcgatacaaactactccgtcaataccagaggcCATAGCTCTccttccagagcttttaattaagacccaggtaggtctctgttcctacaaatgtcagtgagagattcagccctgaacttcagtacttgctggcccagctccctggcctccttctc-aggtggcttcaggagcgggcacatgtgaaaacggggagacccaccttgtgctcggcagacccaggctgaaggcagttctctgtgtcctgaacacaagcaacatggaggaggcctcgttctgcctttggggtttggggcctggctcatagctt-aatgctgcaccaaagctcaagaaatatcttgtagggaaatctggccatgaatttgagaatttgagaacctcaaatatctaatttc-ttagtcagtccctgtgtcccttgcttggtttccctttctccagcagattccctcctgagcccatgacacctcttctgtatgaacaatgaattggcaaatgccccatgggtggca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45695307 558 - 122973662 tggAAAATGAAGGTGgtccagagtttaccattgttaccagcaagagggttatttcaatacaaactactccgtcaataccagaggcCATAGCTCTccttccagagcttttaattaaggcccaggtaggtctttgttcctacaaatgtcagtgagagattcagccttgaacttcagtatttgctggcccagctccctggcctccttctc-aggtagcttcaggagcgggcacatgtgaaaagggggagacccaccttgtgCCCAGCAGACCCAGGCTGAAGgcagttctctgtgtcctgaacacaagcaacatggaggaggcctcattctgcctttggggtttggggcctggctcatagctc-agtgctgcaccacagctcaagaaatatcctgtgggaaaatctggccatgaatttgagaatttgagaacctcaaatatctaatttc-ttagtcagtccctgtgtgccttgcttggtttccctttctccagcagattccctcccgagcccatgacacctcttctgtatgaacaatgaattggcaaatgccccatgggtggca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139319258 557 - 172585720 tggaaaatgaaggtgAtccagaatttatcattgttaccagcaagagggttatttcaatacaaactactccaccaataccagaggcCATAGCTCTccttccagagcctttaattaagactcaggtaggtctctgttcctacaaatgtcagtgagagattcaaccctgaatttcagttcttgctggcccagctccctggccgcctcctc-aggtagc-tcaggagctggaacatgtgaaaagggggagacccaccttgtgctcgaCAGACCCAGGCTGAAGgcagttctctgtgtcctgaacacaagcaacatggaggaggcctcattctgcctttggagtttggggcctggctcatagctc-agtgctgcaccaaagctcaagaaatatcttgtggggaaatctggccatgaatttgagaatttgagaacctcaaatatctaatttc-ttactcagtctctgtgtcccttacttggttcccctttctccagcagattccctcctgagcccatgacacctcttctgtatgaacaatgagttggcaaatgccccatgggtggca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138486444 557 + 170955103 TGGAAAATGAAGGTGAtccagaatttatcattgttaccagcaagagggttatttcaatacaaactactccaccaataccagaggcCATAGCTCTccttccagagcttttaattaagacccaggtaggtctctgttcctacaaatgtcagtgagagattcaaccctgaatttcagttcttgctggcccagctccctggcctccttctc-aggtagc-tcaggagctggcacatgtgaaaagggggagacccaccttgtgctcgaCAGACCCAGGCTGAAGgcagttctctgtgtcctgaacacaagcaacatggaggaggcctcattctgcctttggagtttggggcctggctcatagctc-agtgctgcaccaaagctcaagaaatatcttgtggggaaatctggccatgaatttgagaatttgagaacctcaaatatctaatttc-ttactcagtctctgtgtcccttacttggttcccctttctccagcagattccctcctgagcccatgacacctcttctgcatgaacaatgagttggcaaatgccccatgggtggca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      193438 556 +    407600 TGGAAAATGAAGGTGAtccagaatttatcattgttaccagcaagagggttatttcaatacaaactactccaccaataccagaggcCATAGCTCTccttccagagcctttaattaagactcaggtaggtctctgttcctacaaatgtcagtgagagattcaaccctgaatttcagttcttgctggcccagctccctggccgcctcctc-aggtagc-tcaggagctggcacatgtgaaaagggggagacccaccttgtgctcgaCAGACCCAGGCTGAAGgcagttctctgtgtcctgaacacaagcaacatggaggaggcctcattctgcctttggagtttggggcctggctcatagctc-agtgctgcaccaaagctcaagaaatatcttgtggggaaatctggccatgaattc-agaatttgagaacctcaaatatctaatttc-ttactcagtctctgtgtcccttacttggttcccctttctccagcagattccctcctgagcccatgacacctcttctgcatgaacaatgagttggcaaatgccccatgggtggca
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       65844 557 +    463628 TGGAAAATGAAGGTGAtccagaatttatcattgttaccagcaagagggttatttcactacaaactactccaccaataccagaggcCATAGCTCTccttccagagcttttaattaagacccaggtaggtctctgttcctgcaaatgtcagtgagagattcaaccctgaacttcagttcttgctggcccagctccctggcctccttctc-aggtagc-tcaggagctggcacctgtgaaaagggggagacccaccttgtgctcgaCAGACCCAGGCTGAAGgcagttctctgtgtcctgaacacaagcaacatggtggaggcctcattctgcctttggagtttggggcctggctcatagttc-agtgctgcaccaaagctcaagaaatatcttgtggggaaatctggccatgaatttgagaatttgagaacctcaaatatctcatttc-ttactcagtctctgtgtcccttacttagttcccctttctccagcagattccctcctgagcccatgacacctcttctgcatgaacagtgagttggcaaatgccccatgggtggca
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39644010 557 +  71996105 TGGAAAATGAAGGTGAtccagaatttatcattgttaccagcaagagggttatttcaatacaaactactccaccaataccagaggcCATAGCTCTccttccagagcttttaattaagactcaggtaggtctctgttcctgcaaatgtcagtgagagattcaaccctgaacttcagttcttgctggcccagctccctggcctccttctt-aggtagc-tcaggagctgacacatgtgaaaagggggagacccaccttgtgctcgaCAGACCCAGGCTGAAGgcagttctctgtgtcctgaacacaagcaacatggaggaggcctcattctgcctttggagtttggggcctggctcatagctc-agtgctgcaccaaagctcaagaaatatcttgtggggaaatctggccatgaatttgagaatttcagaacctcacatacctaatttc-ttattcagtctctgtgtcccttacttggttcccctttctccagcagattccctcctgagcccatgacacctcttctgcatgaacaatgagttggcaaatgccccatgggtggca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       65401 548 -    115496 TGGAAAATGAAGGTGATCCAGAATTTATCATT-TTACCAGCAAGTGGGTTATTTCAATACAAACTACTACACCAATACCAGAGGCCATAGCTCTccttccagagcttttaattaagacccaagtaggtcactgttcctgcaaatgtcagtgagagattcaaccctgaacttcagttcttgctggcccagctccctggcctccttctc-aggtagc-tcaggagctgacgcatgtgaaaagggggagacccaccttgtgCTCAACAGACCCAGGCTGAAGgcagttctctgtgtcctgaacacaagcaacatggaggaggcctcattctgcctttggagtttggggcctggctcatagctc-agtgctgcaccaaagctcaagaaatatcttgtggggaaatctggccatgaatttgagaatttgagaacctcaaatatctaatttc-ttactcagtccctgtgtcccttacttggttcccctttctccagcagattccctcc--------tgacacctcttctgcatgaacaatgagttggcaaatgccccatgggtggca
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138639613 556 - 171630274 TGGGAAAAGAAGGTGGCTcagaatttataattgttaccagcaagagggttatttcaataaaaactactccaccaataccagaggcCATTGCTCTccttccagagcttttaattaa-acccaggtaggtctctgttcctgtgaatgtcagtgagagattcagccctgaacttcagtacttgctggcccagctccctggcttccttctccaggtagctccaggagcaggcacatgtgaaaacggggagatcaacctcatgctggacagacccagcctgaaggcaggtctctgtgtcctgaacacaggcaacatgggggaggccccattctgcctttggggttgtgggcctggctcacagttc-agtgctgcaccaaagctaaagaaacgacttgtggggaaatctggccatgactttgagaatttgagaacctcaaatgtctaatttc-ttactcagtccctgtatcccttacttggttcccctttctccagcagattccctcctgaacca-tgacacctcctctgcctgaacagtgaattggcaaatgccccatgggtgga-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            195470 557 +   1154217 TGGGAAAAGGAAGTGgcccagaatttataattgttaccagcaagagggttatttcaatacaaactactccaccaataccagaggcCACTGCTCTccttccagagcttttaattaagacccaagtaggtctctgtttctgtaactgtcagtgagagattcagccctgaacttcagtacttgctggcccagctccctggcctccttctccaggtagcttcaggagcaggtacatgtgaaaacggggagatcagccttgtgctGCACAGACCCAGGCTGAAGgcagttctctgtgtcctgaacacaggcagcatggaggaggcctcattctgcctttggggttttgggcctggctcacagttcaaatgctgcaccaaagctcaagaaacaacttgtggggaaatctggccatgaatttgagaatttgagaacctcaaatatctaatttc-tcgctcagtccctgtgtcc--gacttggttcccctttctccagcagattccctcctgagccagtgacacctcctctgcctgaacaatgaattggcaaatgccccatgcgtgga-
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      266741 559 +    446445 TGGGGAAAGAAGGTGgcccagaatttatcattgctaccagcaagagggttatttcaatacaaactactccaccaataccagaggcCATTGCTCTccttccagagcttttaattaagacccagataggtctctgttcctgtaaatgtgagtgagagattcagccctaaacttcagtacttgctggcccagctccctggcctctttctctaagtagcttcaggagcaggcacatgtgaaaacggggagatcaaccttgtgctagacagacccagGCTGAAggcagttctctgtgtcctgaccacaggcaacatggaggaggccccattctgcctttggggttttgggcctggctcacagttcaaatgctgcaccaaagctcaagaaacaacttgtggggaaatctggccgtggatttgagaatttgagaacctcaaatatctaatttc-ttgctcagtccctgtgtcccttacttggtttccctttctccagcagactccctcttgaaccaatgacacctcctctgcctgaacaatgaattggcaaatgacccatgggtgga-
i aotNan1.NW_018508875v1   I 9 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      687892 886 -   1936607 I

a score=6982991.000000
s hg38.chr6_KI270758v1_alt     33764 860 +     76752 ggggaagagctgtga-ttgtcagctcacctcaaaaggatcacctattctctgcaattgtatttcatctagtgcatgttgcttccacagctctccttttcctttaaagtacgaattttgtgttttaaatttttaacttttctagctggtgtactgggagtgttgAGTTAATCTAGCAGTATCCCA-CAGAGAAGTCAAAGTCATATATTTATGttctgttatgtttttcttggattttattattttttgttttctta---tatatt-ttttaattgatgccatgcagaagaaaaatatgagtgataatttgaggctccaggaaatattatatttctctagaggttatttagttttgcttgtgtcaggcaatgaggctatgaggctaaggtcattaatatctcaaatcacccaaatctagtctaggattagttagttagaactcaggattcagttcctatgaaggatgatctgtttctgtttcaccttattccacatattagacttccaaggtttctatggaaagcgtatttttatcttatggagtccttcctttatttgtgaggcatgaaatccaaatttgtccctctagccctttgaACATTTTGTGGGGTTTTTGTGCTTAATGGAAGTTGAGCCAAATGAAAAGGAACACAGGTATCAAACACCACATGGAAGCTGAAGCAGCTAGCTGTATTGAACATGTTTCCCCCTCACATAATAAATAGCATATATTCTTATCAAGCTGGAGCTGGCATCGTAGGAAGCACTTTTTCTCTTTGCATTTACATCTTCTGATCTTTG----GGAATGAAAATCGTCTGTATACGTGATTCTTTCCTACTTGGTTGTGGCCATTATCTTGTTCCCTT
s panTro5.chr6             142737097 856 - 175400573 ggggaagagctgtga-ttgtcagctcacctcaaaagggtcacctattctctgcaattgtatttcatctagtgcatgttgcttccacagctctccttttcctttaaagtacgaattttgtgttttaaatcttgaacttttctagctgttgtactgggagtgttgagttaatctagcagtatccca-cagagaagtcaaagtccTATATTTATtttctgttatgtttttcctggattttattattttttgttttctta---ttgatt-ttttaattgaggccatgcagaagaaaaatatgagtgataatttgaggctccaggaaatattatatttctctagaggttatttagttttgcttgtgtcaggcaatgaggcta--------agggcattaatatctcaaatcacccaaatctagtctaggattggttagttagaactcaggattcagttcctatgaaggatgatctgtttctatttcaccttatcccacatattagacttccaaggtttctatggaaagtgtatttttatcatatggagtccttcctttatttgtgaggcatgaaatccaaatttgtccccctggccctttgaACATTTTGTGAGGTTTTTGTGCTTAATGGAAGTTGAGCCAAATGAAAAGGAACACAGGTATCAAACACCACATGGAAGCTGAAGCAGCTAGCTGTATTGAACATGTTTCCCCCTCACATAATAAATAGTATACATTCTTATCAAGCTGGAGCTGGCATCATAGGAAGCACCTTTTCTCTTTGCCTTTACTTCTTCTGATCTTTGACTGGGAATGAAAACCATCTGTATATGTGATTCTTTCCTACATGGTCATGGCCATTATCTTGTTCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140885069 856 - 173848474 ggggaagagctgtga-ttgtcagctcacctcaaaagggtcacctattctctgcaattgtatttcatctagtgcatgttgcttccacagctctccttttcctttaaagtacgaattttgtgttttaaatcttgaacttttctagctgttgtactgggagtgttgagttaatctagcagtatccca-cagagaagtcaaagtccTATATTTATtttctgttatgtttttcctggattttattattttttgttttctta---ttgatt-ttttaattgaggccatgcagaagaaaaatatgagtgataatttgaggctccaggaaatattatatttctctagaggttatttagttttgcttgtgtcaggcaatgaggcta--------agggcattaatatctcaaatcacccaaatctagtctaggattggttagttagaactcaggattcagttcctatgaaggatgatctgtttctatttcaccttatcccacatattagacttccaaggtttctatggaaagtgtatttttatcttatggagtccttcctttatttgtgaggcatgaaatccaaatttgtccccctggccctttgaACATTTTGTGAGGTTTTTGTGCTTAATGGAAGTTGAGCCAAATGAAAAGGAACAGAGGTATCAAACACCACATGGAAGCTGAAGCAGCTAGCTGTATTGAACATGTTTCCCCCTCACATAATAAATAGCATATATTCTTATCAAGCTGGAGCTGGCATCATAGGAAGCACCTTTTCTCTTTGCCTTTACATCTTCTGATCTTTGACTGGGAATGAAAACCGTCTGTATATGTGATTCTTTCCTACATGGTCATGGCCATTATCTTGTTCCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2402848 855 +   2807050 ggggaagagctgtga-ttgtcagctcacctcaaaagggtcacctattctctgcaattgtatttcatctagtgcatgttgcttccacagctctccttttcctttaaagtatgaattttgtgttttaaatctttaacttttctagctgttgtactgggagtgttgagttaatctagcagtatccca-cagagaagtcaaagtccTATATTTATGttctgttatgtttttcctggattttattattttttgttttctta---ttt-tt-ttttaattgaggccatgcagaagaaaaatacgagtgataatttgaggctccaggaaatattatatttctctagaggttatttagttttgcttgtgtcaggcaatgaggcta--------agggcattaatatcccaaatcacccaaatctagtctaggattggttagttagaactcaggattcagttcctatgaaggatgatctgtttctatttcaccttatcccacatattagacttccaaggtttctatggaaagtgtatttttatcgtatggagtccttcctttatttgtgaggcatgaaatccaaatttgtccccctggccctttgaACATTTTGTGAGGTTTTTGTGCTTAATGGAAGTTGAGCCAAATGAAAAGGAACACAGGTATCAAACACCACATGGAAGCTGAAGCAGCTAGCTGTATTGAACATGTTTCCCCCTCACATAATAAATAGCATACATTCTTATCAGGCTGGAGCTGGCATCATAGGAAGCACCTTTTCTCTTTGCCTTTACATCTTCTGATCTTTGACTGGGAATGAAAACCGTCTGTATATGTGATTCTTTCCTACATGGTCATGGCCATTATCTTGTTCCCTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45695865 852 - 122973662 gaggaagagctgtga-ttgtcagctcacctcaaaagggtcacctattctctgcaattgtatttcatctagtgtttgttgcttccacagctctcctttccctttaaagtatgaattttgtgtcttaaatttttaacttttctagctgttgtactgggagtgttgagttaatctagcagtatccca-cagagaagccaaagtcctatatttattttctgttatgtttttcctggcttttattattttttgttttctta---tatatt-ttttaattgaggccatgcagaagaaaaatatgagtgataatttgaggctccaggaaatattatatttctctagaggttatttagttttgcttgtgtcaggcaatgaggcta--------agggcattaatatctcaaatcacccaaatctagtctagga----ttagttagaactcaggattcagttcctatgaaggatgatctgtttctatttcaccttattccacatattagacttccaaggtttctatggaaagtgtatttttatcttatggagtccttcctttatttgtgaggcgtgaaatccaaatttgtccccctagccctttgaACATTTTGTGAGGTTTTTGTGCTTAATGGAAGTTGAGCCAAATGAAAAGGAACACAGGTATCAAACACCACATGGGAGCTGAAGCAGCTAGCTGTATTGAACATGCTTCCCCCTCATGTAATGAATAGCATATATTCTTATCAAGCTGCAGCTGGCATCATAGGAAGCACCTTTTCTCTTTGCCTTTACGTCTTCTGATGTTTGACTGGGAATGAAAATCGTCTGTATATGTGATTCTTTCCTACTTGGTTGTGGCCATTATCTTGTTCCCTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139319815 837 - 172585720 ggggaagagctgtga-ctgtcagctcagctcaaaaggatcacctgttctctgctattgtatttcatctagtgcacgttgcttccacagccctccttttcctttaaagtatgaattttgtgtttaaaatttttaacttttctagctattgtactaggagtgttgagttaatctagcgatatccca-cagagaagtcaatgtcctatatttattttctgttatgtttttcctggcttttattattttctgttttctta---t---tt-ttttaattgagaccatgcagaagaaaaatatgagtgataatttgaggctccaggaaatattatatgtctctagaggttatttagtttagcttgtgtcaggcaacgaggcta--------agggcattaatatctcaaatcacccgaatctagactagaattagttagatagagctcaggattcagttcctatgaaggatgatcggtttctatttcaccttattccacacattagacttctaaggtttctatggaaagtgtatttttatcttatggggcccttcctttatttgtgaggcatgaaatccaaatttgcccctctagccctttgaACATTTTGTGAGGTTTTTGTGCTTAATGGAAGTTGAGCCACATGAAAAGGAACACAGGTATCAAACACCACGTGGAAGCTGAAGCAGCTAGCTGTATTGAACATGTCTCCCCCTCACAT----AATAGCATATATTCTTATCCAGCTGGAGCTGGCATCATAGGAAGCACCTTTTCTCTTTGCCTTTACATCTTCTGATCTTTGACAGGGAAAGAAAATCTTCTGTATATGTGATTCTTTCCTACTTGGTCA------------TGTTCCCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138487001 837 + 170955103 ggggaagagctgtga-ctgtcagctcagctcaaaaggatcacctgttctctgcaattgtatttcatctagtgcacattgcttccacagccctccttttcctttaaagtatgaattttgtgttttaaatttttaacttttctagctattgtactgggagtgttgagttaatctagcaatatcccacccgagaagtcaatgtcctatatttattttctgttatgtttttcctggcttttattattttttgttttctta---t---tt-ttttaattgagaccatgcagaagaaaaatatgagtgataatttgaggctccaggaaatattatatgtctctagaggttatttagtttagcttgtgtcaggcaacgaggcta--------agggcattaatatctcaaatcacccgaatctagactagaattagttagatagagctcaggattcagttcctatgaaggatgatcggtttctatttcaccttattccacacattagacttctaaggtttctatggaaagtgtatttttatcttatggggcccttcctttatttgtgaggcatgaaatccaaatttgcccctctagccctttgaACATTTTGTGAGGTTTTTGTGCTTAATGGAAGTTGAGCCACATGAAAAGGAACACAGGTATCAAACACCACGTGGAAGCTGAAGCAGCTAGCTGTATTGAACATGTCTCCCCCTCACAT----AATAGCATATATTCTTATCCAGCTGGAGC-AGCATTATAGGAAGCACCTTTTCTCTTTGCCTTTACATCTTCTGGTCTTTGACAGGGAAAGAAAATCTTCTGTATATGTGATTCTTTCCTACTTGGTCG------------TGTTCCCTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      193994 837 +    407600 ggggaagagctgtga-ttgtcagctcagctcaaaaggatcacctgttctctgcaattgtatttcatctagtgcacgttgcttccacagccctccttttcctttaaagtatgaattttgtgtttaaaatttttaacttttctagctattgtactaggagtgttgAGTTAATCTAGCGATATCCCA-CAGAGAAGTCAATGTCctatatttattttctgttatgtttttcttggcttttattattttctgttttctta---t---tt-ttttaattgagaccatgcagaagaaaaatatgagtgataatttgaggctccaggaaatattatatgtctttagaggttatttagtttagcttgtgtcaggcaacgaggcta--------agggcattaatatctcaaatcacccgaatctagactagaattagttagatagagctcaggattcagttcctatgaaggatgatcggtttctatttcaccttattccacacattagacttctaaggtttctatggaaagtgtatttttatcttatggggcccttcctttatttgtgaggcatgaaatccaaatttgcccctctagccctttgaACATTTTGTGAGGTTTTTGTGCTTAATGGAAGTTGAGCCACATGAAAAGGAACACAGGTATCAAACACCACATGGAAGCTGAAGCAGCTAGCTGTATTGAACAGGTTTCCCCCTCACAT----AATAGCATATATTTTTATCAAGCTGGAGCTGGCATTATAGGAAGCACCTTTTCTCTTTGCCTTTACATCTTCTGGTCTTTGACTGGGAATGAAAATCTTCTGTATATGTGATTCTTTCCTACTTGGTCG------------TGTTCCCTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       66401 833 +    463628 ggggaagaactgt-a-ttgccagctcagctcaaaaggatcacctgttctctgcaattgtatttcatctagtgcgtgttgcttccacagctctccttttcctttaaagtatgaattttgtgttttaaatttttaacttttctagctgttgtactggaagtgttgacttaatctagtgatatccca-cagagaagTCAATTTCctatatttattttctgttatgtttttcctggcttttattattttttgttttctta--tt---tt-ttttaattgaggccatggagaagaaaaatatgagtgataatttgaggctccaggaaatactatatttctctagaggttatttagtttagcttgtgtcaggcaacgaggcta--------agggcattaatatctcaaatcacccaaatctagactagggttagttagatagaactcaggattcagttcctatgaaggatgatcggtttctatttcaccttattccacatattagacttccaaggtttctatggaaagtgtatttttatcttatggggcccttcctttatttgtgaggcatgaaatccaaatttgtccctctagccctttgaACATTTTGTGAGGTTTTTGTGCTTAATGGAAGTTGAGCCAAATGAAAAGGAACACAGGTATCAAACACCACATGGAAGCTGAAGCAGCTGGCTGTATTGAACATGTTTCCCCCTCACAT----AATAGCATATATTCTTATCAAGCTGGAGCTGGCATTATAGGAAGTACCTTTTCTCTTTGCCTTTACATCTTCTGATCTTT----GGGAATGAAAATCTTCTGTATATGTGATTCTTTCCTACTTGGTCG------------TGTTCCCTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39644567 839 +  71996105 ggggaagagctgtga-ctgtcaactcagctcaaaaggatcacctgttctctgcaattgtatttcatctagtgcacgttgcttccacagccctccttttcctttaaagtatgaattttgtgttttaaatttttaacttttctagctgttgtactgggagtgttgAGTTAATCTAGCGATATCCCA-CAGAGAAGTCAATGTCTTATAtttattttctgttatgtttttcctggcttttattattttttgttttcttatatt---tt-ttttaattgatgccatgcagaag-aaaatataagtgataatttgaggctccaagaaatattatatttctctagaggttatttagtttagcttgtgtcaggcaatgagacta--------atggcattaatatctcaaatcacgcaaatctagtctaggatcggttagatagaactcaggattcagttcctatgaaggatgattggtttctatttcaccttattccacatattagacttccaaggtttctatggaaagtgtatttttatcttatggggcccttcctttatttgtgaggcatgaaatccaaatttgtccctctagccctttgaACATTTTGTGAGGTTTTTGTGCTTAATGGAAGTTAAGCTAAATGAAAAGGAACACAGGTATCAAACACCACATGGAAGCTGAAGCAGCTAGCTGTATTGAACATGTTTCCCCCTCAAAT----AATAGCATATATTCTTATCCAGCTGGAGCTGGCATCATAGGAAGCACCTTTTCTCTTTGCCTTTACATCTTCTGATCTTTGACAGGGAAAGAAAATCTTCTGTATATGTGATTCTTTCCTACTTGGTCG------------TGTTCCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       65949 837 -    115496 ggggaagagctgtga-ctgtcaactcagctcaaaaggatcacctgttctctataattgtatttcatctagtgcacgttgcttccacagctctccttttcctttaaagtatgaattttgtgttttaaatttttaacttttctagctgttgtactgggagtgttgAGTTAATCTAGTGATATCCCA-CAGAGAAGTCAATGTCCTATATTTATTTTCTGTTATGTTTTTCCTGGCTTTTATTATTTTTTGTTTTCTTA---T---Tt-ttttaattgaggccatgcagaagaaaaatatgagtgatcatttgaggctccaggaaatactatatttctctagaggttatttagtttagcttgtgtcaggcaacgaggcta--------agggcattaatatctcaaatcacccaaatctagactaggattagttagatagaactcaggattcagttcctatgaaggatgatcggtttctatttcaccttattccacatattagacttccaaggtttctatggaaagtgtatttttatcttatggggcccttcctttatttgtgaggcatgaaatccaaatttgtccttctagccctttgaACATTTTATGAGGTTTTTGTGCTTAATGGAAGTTGAGCCACATGAAAAGGAACACAGGTATCAAACACCACATGGAAGCTGAAGCAGCTAGCTGTATTGAACATGTTTCCCCCTCACAT----AATAGCATATATTCTTATCAAGCTGGAGTTGGCATTATAGGAAGTACCTTTTCTCTTTGCCTTTACATCTTCTGATCTTTGACTGGGAATGAAAATCTTCTGTATATGTGATTCTTTCCTACTTGGTCG------------TGTTCCCTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      688778 837 -   1936607 GGGGaagagctgtga-ttgtcagctcagctcaaagggatcacctgttctctgcaattgtatttcatctagtgcacgttgcttccacaaccctccttttcctttaaagtatgaattttgtgttttaaacttttaacttttctagctgttgtactggaagtgttgagttaatctagcaatatccca-cagagaagtcaatgtccTATATTTATTTTCTGTTATGTTTTTCCTTGCTTTTATTATTTTTTGTTTTCtta---t---tt-ttttaaatgaggccatgcagaagaaaaatatgagtgataatttgaggctccaggaaatattatatttctctagaggttatttagtttagcttgtgtcaggcaacgaggcta--------agggtattaatatctcaaatcacccaaatctagactaggattagttagactgaactcaggattcagttcctatgaaggatgatcagtttctatttcaccttattccacatattagacatccaaggtttctatggaaagtgtatttttatcttatgggccccttcctttatttgtgaggcatgaaatccaaatttgtccctctagccctttgaACATTTTGTGAGGTTTTTGTGCTTAATGGAAGTTGAGCCACATGAAAAGGAACACAGGTATCAAACACCACATGGAAGCCGAAGCAGCTAGCTGTATTGAACATGTTTCCCCCTCACAT----AATAGCATATATTCTTATCAAGCTGGAGCTGGCATTATAGGAAGCACTTTTTCTCTTTGCCTTTACATCTTCTGATCTTTGACTGGGAATGAAAATCTTCTGTATATGTGATTCTTTCCTACTTGGTCT------------TGTTCCCTT
i colAng1.NW_012115555v1   I 886 C 0
s calJac3.chr4             138640169 820 - 171630274 agggaagacctgtgatttgtcagctcacctcagaagaatcacctgttctctgcaattgta---------------------ttcacaactctccttttcctttgaagtatgaattttgcattttaaatttttaatttttctagctgttgta-tgaaagtgttgagttgatctagcggtatccca-cagagaagtcaaagtcTTCTACTTATTTTCTGTTACGTTTTTCCTGGCTTTTATTGTT---TATTTTCTTA---TAAATatttttaattgaggccat---aaagaaaaatatgagtgataatttgaggctccaagaaatattatatttctctagaggt---ttagttttgcttgtgtcaggcaacgaggcta--------agggcattaatatctcaaatcaccaaaatctagtctaggattacttagttagaactcaggcttcagttcctgtgaaggattaactgtttctattttaccttattccacatatttgacatccaa-gtttccatagaaagtgta-ttttatcttatggagcccttcctttatttgtgagccataaattccaaatttgtccctcaagcccTTTAAACA-TTTGTGA-GTTTTTGTGCTTAATGGAAGTTGAGTCCAATGAAAAGGAACACAGGTATCAAACGCCACATGGAAACTGAAGCAAATAGCTGTGTTGAACATGTTTCCCCCTCACATAAC-AATAGCATATATTCCTATCCAGCTGGAGCTGGCATCATAGGAAGCACCTGTTCTC--TGTCTTTGTATCTTCTGATCTTTGGCTGGGAATGAAAATCATCTGTATATGTGATTCTTTCCTACTTGGTCGTGGCCAGTATCTTGTTCCCCT
i calJac3.chr4             C 0 I 1
s saiBol1.JH378315            196027 822 +   1154217 agggaagagctgtga-ttgtcagctcacctcagaagaatcacctgttctctgcaactgta---------------------ttcccagctctccttttcctctgaagtatgaattttgcattttaaatttttaatttttctagctgttgtactgaaagtgttgAGTTGATCCAGCGGTATCCCA-CAGAAAAGTCAAAGTCTCCTACTTAttttctgttatgtttttcctggcttttattgtt---tattttctta---tacatatttttagttgaggccat---aaagaaaaatatgagtgataatttgaggctccagtaaatattatatttctctagaggttacttagttttgcttgtgtcagacaatgaggcta--------aggtcattaatatctcaaatcaccaaaatctagtctagaa----ttagttagaactcaggcttcagttcctatgaaggattaactgtttctattttaccttattccACATATTTGACATCCAA-GTTTCCATAGAAAGTGTATTTTTATCTTATGGAGCCCTTCCCTTATTTGTGAGGTATAAATTTCAAATTTGTCCCTCAAGCCCTTTAAACA-TTTGTGA-GTTTTTGTGCTTAAGCCAAGTTGAGTCAAATGAAAAGGAACACAGATATCAAACGCCACATGGAACCTAAAGCAACTAGCTATGTTGAACATGTTTCCCCCTCACATAAC-AAGAGCATATATTCCTATCCAGCTGGAGCTGGCATCATAGAAAGCACCTTTTCTCTTTGTCTTTATATCATCTGATCTTTGACTGGGAATGAAAATCATCTGTATATGTGATTCTTTCCTACTTGGTCATGGCCAGCATCTTGTTCCCCT
i saiBol1.JH378315         C 0 I 199
s aotNan1.NW_018508875v1      267300 824 +    446445 agggaagagctgtga-ttgtcagctcgcctcaaaaggatcacctgttctctgcaattgta--------------------tttcatagctctcgttttcctttgaagtatgaattttgcattttaaatttttaatttttctagctgttGCACTGAAAGTGTTGAGTTGATCTAGCGGTATCCCA-CAGAAAAGTCGAAGTCTTCTACTtattttctgttatgtttttcctggcttttattgtt---tatttcctta---tacatg-ttttaattgaggccat---aaagaaaaatatgagtgataatttgagactccaggaaatattatatttctctagaggttatttagtttcgcttgtgtcaggcaatgaggcta--------agggcattaatatctcaaatcaccaaaatctagtctaggattagttagttagaactcaggcttcagttcctatgaaggattaactgtttctattttaccttattccacgtatttgacatccga-gtttccatagaaagtgtatttttatcttatggagcccttcctttatttgtgaggcataaattccaaatttgtccctcaagcccTTTAAACA-TTTGTGA-CTTTTTGTGTTTAATGGAAGTTGAGTCAAATGAAAAGGAACATAGGTATCAAATGCCACATGGAAACTGAAGCAGCTAGCTATGCTGAACGTGTTTCCCTCTCACATAAC-AATAGC--ATATTCCTATCCAGCTGGAGCTGGCATCATAGGAAGCACCTTTTCTCTTTGTCTTTATATCTTCTGATCTTTGGCTGGGAATGAAAATCATCTGTACATGTGATTCTTTCCTACTTGGTCATGGCCAGTATCTTGTTCCCCT
i aotNan1.NW_018508875v1   C 0 I 1
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=7082.000000
s hg38.chr6_KI270758v1_alt     34624 3 +     76752 ACT
s panTro5.chr6             142737953 3 - 175400573 ATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140885925 3 - 173848474 ATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2403703 3 +   2807050 ATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45696717 3 - 122973662 ACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139320652 3 - 172585720 ACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138487838 3 + 170955103 ACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      194831 3 +    407600 ACT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       67234 3 +    463628 ACT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39645406 3 +  71996105 ACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       66786 3 -    115496 ACT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      689615 3 -   1936607 ACT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138640990 2 - 171630274 AT-
i calJac3.chr4             I 1 I 1
s aotNan1.NW_018508875v1      268125 2 +    446445 AT-
i aotNan1.NW_018508875v1   I 1 I 1
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            196849 199 +   1154217 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=6402833.000000
s hg38.chr6_KI270758v1_alt     34627 763 +     76752 CTAAGGAATTATCTAGATGTTGGATGATTTGGGG------------CTGGATAATGATGGATGTGAAGTTGTATTTTACTTGCTCATGGTTAGCTGGAACGTTTCCCTCCCCACCATCTACCTAAGTAGTTTCCAAGCTGCCTATATCAGATCAATCAGGTCCAGGTGAGCAGGAATAGAATCCAGAGCCGCCACATACACTGGGATATGAGGATGTCTGTTGAGTTGTGTTTTGTATAAATtgtgaaaggaaactaaaaatttggcaccccaattcaccatgtcaaaaggaaagaattaaggtgaaagctgagtcacgcaagaaattgcctttcctttggtttccaagcagatagctacag---ataaaaggttaaaaatatccccaccggtagctactctatgttcacctaatcatatgcaaagcgatgatttactgagagcaagatgaatacataactgactcttcccctacctgcccctttttccttgcaacatgtggattgccataccttctctctttccctgtcagcccacttttcccctttaaatattg---------aaatcatctttggagaaagacacagaccagattgcctgtgtcatttgatga-----ttttttctttccagcatgtccctaaccttgggaaaataaacttctaaattgcttaagacctgtctcagacactttttggtttacaACCTTGACATATATCAGAGTTTCAACCTATGTGATAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACACTATTGGAGCTATT
s panTro5.chr6             142737956 763 - 175400573 CCAAGGAATTATCTAGATGTTGGATGATTTGGGG------------CTGGATAATGACAGATATGAAGTTGTATTTTACTTGCTCATGGTTAGCTGGAACATTTCCCTCCCCACCATCTACCTAAGTAGTTTCCAGGCTGCCTGTATCAGCTCAATCAGGTCCAGGTGAGCAGGAATAGAATCCAGAGCCGCCACATACACTGAGCCATGAGGATGTCTGTTGAGTTGTGTTTTGTATAAATtgtgaaagaaaactaaaaacttggcaccccaattcaccatgtcaaaaggaaagagttaaggtgaaagctgagtcatgcaagaaattgcctttcctttggtttccaagcagatagctacag---ataaaaggttaaaaatatccccaccggtagctactctatgttcacctaatcatatgcaaagcgatgatttactgagtgcaagatgaatacataactgactcttcccctacctgcccctttttcctcgcaacatgtggattgccataccttctctctttccctgtcagcccgcttttcccctttaaatatcg---------aaatcatctttggagaaagatacagaccagattgcctgtgtcattcgatga-----ttttttctttccagcatgtccctaaccttgggaaaataaacttctaaattgcttaagacctgtctcagatactttttggtttacaACGTTGACATATATCAGAGTTTCAACCTATGTGATAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACACTATTGGAGCTATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140885928 763 - 173848474 CCAAGGAATTACCTAGATGTTGGATGATTTGGGG------------CTGGATAATGACGGATATGAAGTTGTATTTTACTTGCTCACGGTTAGCTGGAACATTTCCCTCCCCACCATCTACCTAAGTAGTTTCCAGGCTGCCTGTATTTGATCAATCAGGTCCAGGTGAGCAGGAATAGAATCCAGAGCCGCCACATACACTGAGCCATAAGGATGTCTGTTGAGTTGTGTTTTGTATAAATtgtgaaagaaaactaaaaacttgacaccccaattcaccatgtcaaaaggaaagaattaaggtgaaagctgagtcatgcaagaaattgcctttcctttggtttccaggcagatagctacag---ataaaaggttaaaaatatccccactggtagctactctatgttcacctaatcatatgcaaagcgatgatttactgagtgcaagatgaatacataactgactcttcccctacctgcccctttttccttgcaacatgtggattgccataccttctctctttccctgtcagcccacttttcccctttaaatatcg---------aaatcatctttggagaaagacacagaccagattgcctgtgtcattcgatga-----ttttttctttccagcatgtccctaaccttgggaaaataaacttctaaattgcttaagacctgtctcagatactttttggtttacaACCTTGGCATATATCAGAGTTTCAACCTATGTGATAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACACTATTGGAGCTATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2403706 762 +   2807050 CCAAGGAATTATGTAGATGTTGGATGATTTGGGG------------CTGGATAATGACGGATATGAAGTTGTATTTTACTTGCTCATGGTTAGCTGGAACATTTCCCTCCCCACCATCTACCTAAGTAGTTTCCAGGCTGCCTGTATCAGATCAATCAGGTCCAGGTGAGCAGGAATAGAATCCAGAGCCGCCACATACACTGAGCCATGAGGATGTCTGTTAAGTTGTGTTTTGTATTAATtgtgaaagaaaactaaaaacttggcaccccaattcaccatgtcaaaaggaaagaattaaggtgaaagctgggtcatgcaagaaattgcctttcctttggtttccaagcagatagctacag---ataaaaggttaaaaatatacccactggtagctgctctatgttcacctaatcatatgcaaagcgatgatttactgagtgcaagatgaatacataactgactcttcccctacctg-ccctttttccttgcaacatgtggattgccataccttctctctttccctgtcagcccacttttcccctttaaagatcg---------aaatcatctttggagaaagacacagaccagattgcctgtgtcatttgatga-----ttttctctttccagcatgtccctaaccttgggaaaataaacttctaaattgcttaagacctgtttcagatcctttttggtttacaACCTTGACATATATCAGAGTTTCAACCTATGTGATAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACACTATTGGAGCTATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45696720 760 - 122973662 CCAAGGAATTATCTAGATGTTGGATGATTTGGGG------------CTGGATAATGACGGATGTAAAGTTGTATTTTACTTGCTCATGGTTAGCTGGAATGTTTCCCT---TACCATCTACCTAAGTAGTTTCCAGGCTGCCTGTATCAGATCAATCAGGTCCAGGTGAGCAGGAATAGAATCCAGAGCCGCCACATACACTGGGATATGAGGATGTCTGTTGAGTTGTGTTTTGTATAAATtgtgaaagaaaactaaaaacttggcaccccagttcaccgtgtcaaaaggaaagaattaaggtgaaggctgagtcatgcaagaaattgcctttcctttggtttccaagcagatagctacag---ataaaaggttaaaaatatccccaccggtagctactctacgttcacctaatcacatgcaaagcgatgatttactgagtgcaagatgaatacataactgactcttcccctacctgcccctttttccttgcaacatgtggattgccataccttctctctttccccgtcagcccacttttcccctttaaatatcg---------aaatcacctttggagaaagacacagaccagatcgcccgtgtcatccgatga-----ttttttctttccagcatgtccctaaccttgggaaaataaacttctaaattgcttaagacctgtctcagatactttttggtttacaACCTTGACATATATCAGAATTTCAACCTATGTGATAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACACTATTGGAGCTATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139320655 772 - 172585720 CCAAGGAAATATCTAGATGTTGGATGATTTGGGG------------CTGGATAATGATGGATGTGAAGTTGTATTTTACTTGCACATGGTTAGCTGGGACGTTTCCCTCTCCACCATCTA-CTAAGTAGTTTCCAGGCTCCCTGTATCAGATCAAACAGGTCCAGGTGAGCAGGTACAGAATCCAGAGACACCACATACACTGGGACATGAGGATGTCTGTTCAGTTGTGTTTTGTATAAATtgtgaaagaaaaataaaaactaggcaccccaattcatcgtgccaaaaggaaaaaattaagctgaaagctgagtcatgcaagaaattgcctttcttttggtttccaagcagatagctacag---ataaaaggttaaaaatatccccaccagtagctatactacgttcacctagtcatatgcaaaatgacgatttactgaacgcaagataaatacataacggcctcttcccctacctgcccctttttccttgcaacatgtggattgccataccttctctctttccctgtcagcccacttttcccctttaaatatcgaggccttcaaaatcatctttggagaaagacacagaccagattgcctgtgtcattcgatga----tttttttctttccagcatgtccctaatcttgggaaaataaacttctaaattgcttaagacctgtctcagataccttttggtttacaACCTTGACACATATCAGAGTTTCAACCTATGTGACAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACACTATTGGAGCTATT
i rheMac8.chr4             C 0 I 6306
s macFas5.chr4             138487841 769 + 170955103 CCAAGGAAATATCTAGATGTTGGATGATTTGGGG------------CTGGATAATGATGGATGTGAAGTTGTATTTTACTTGCACATGGTTAGCTGGGACGTTTCCCTCTCCACCAT----CTAAGTAGTTTCCAGGCTCCCTGTATCAGATCAAACAGGTCCAGGTGAGCAAGTGTAGAATCCAGAGATGCCACATACACTGGGACATGAGGATGTCTGTTCAGTCGTGTTTTGTATAAATtgtgaaagaaaaataaaaactgggcaccccaattcatcatgccaaaaggaaaaacttaagctgaaagctgagtcatgcaagaaattgcctttcttttggtttccaagcagatagctacag---ataaaaggttaaaaatatccccaccggtagctatactaagttcacctagtcatatgcaaaatgacgatttactgagtgcaagatgaatacataacggccttttcctttacctgcccctttttccttgcaacacgtgggttgccataccttctctctttcgctgtcagcccacttttcccctttaaatatcgaggccttcaaaatcatctttggagaaagacacaaaccagattgcctgtgtcattcgatga----tttttttctttccagcatgtccctaatcttgggaaaataaacttctaaattgcttaagacctgtctcagatactttttggtttacaACCTTGACACATATCAGAGTTTCAACCTATGTGACAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACACTATTGGAGCTATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      194834 773 +    407600 CCAAGGAAATATCTAGATGTTGGATGATTTGGGG------------CTGGATAATGATGGATGTGAAGTTGTATTTTACTTGCACATGGTTAGCTGGGACGTTTCCCTCTCCACCATCTACCTAAGTAGTTTCCAGGCTCCCTGTATCAGATCAAACAGGTCCAGGTAAGCAGGTGTAGAATCCAGAGATGCCACATACACTGGGACATGAGGATGTCTGTTCAGTTGTGTTTTGTATAAATtgtgaaagaaaaataaaaactgggcaccccaattcatcatgccaaaaggaaaaaattaagctgaaagctgagtcatgcaagaaattacctttcttttggtttccaagcagatagctacag---ataaaaggttaaaaatatccccaccggtagctatgctacgttcacctagtcatatgcaaaatgatgatttactgagtgcaagatgaatacataactgcctcttcccctacctgcccctttttccttgcaacatgtggattgccaaaccttctctctttccctgtcagcccacttttcccctttaaatatcgaggccttcaaaatcatctttggagaaagacacagaccagattgcctgtgtcattcgatga----tttttttctttccagcatgtccctaatcttgggaaaataaacttctaaattgcttaagacctgtctcagataccttttggtttacaACCTTGACACATATCAGAGTTTCAACCTATGTGACAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACACTATTGGAGCTATT
i macNem1.NW_012013344v1   C 0 I 6807
s cerAty1.NW_012003702v1       67237 772 +    463628 CCAAGGAAATATCTAGATGTTGGATGATTTGGGG------------CTGGATAATGATGGATGTGAAGTTGTATTTTACTTGCACATGGTTAGCTGGGACGTTTCCCTCTCCACCATCTA-CTAAGTAGTTTCCAGGCTCCCTGTATCAGATCAAACAGGTCCAGGTGAGCAGGTACAGAATCCAGAGACGCCACATACACTAGGACATGAGGATGTCTGTTCAGTTGTGTTTTGTATAAATtgtgaaagaaaaataaaaactaggcaccccaattcatcgtgccaaaaggaaaaaattaagctgaaagctgagtcatgcaagaaattgcctttcttttggtttccaagcagatagctacag---ataaaaggttaaaaatatccccaccggtagctatgctacattcacctagtcatatgcaaaatgacgatttactgaacgcaagataaatacataacggcctcttcccctacctgcccctttttccttgcaacatgtggattgccaaaccttctttctttccctgtcagcccacttttcccctttaaatatcgaggccttcaaaatcatctttggagaaagacacagaccagattgcctgtgtcatttgatta----tttttttctttccagcatgtccctaatcttgggaaaataaacttctaaattgcttaagacctgtctcagatactttttggtttacaACCTTGACACATATCAGAGTTTCAATCTATGTGACAGTCCAAGGAACAGTGAAAATTACTAAGGAAAGTGCACTATTGGAGCTATT
i cerAty1.NW_012003702v1   C 0 I 6322
s chlSab2.chr17             39645409 775 +  71996105 CCAAGGAAATATCTAGATGTTGGATGATTTGGGG------------CTGGATAATGATGGATGTGAAGTTGTATTTTACTTGCACATGGTTAGCTGGGACGTTTCCCTCTTCACCATCTA-CTGAGTAGTTTCCAGGCTCCCTGTATCAGATCAAACAGGTCCAGGTGAGCAGGTGTAGAATCCAGAGATGCCACATACACTGGGACATGAGGATGTCTGTTCAGTCGTGTTTTGTATAAATtgtgaaagaaaaataaaaactgggaaccccaattc-ccatgccaaaaggaaaaaattaagctgaaagctgagtcatgcaagaaattgcctttcctttggtttccaagcagatagctatag---ataaaaggttaaaaatatccccaccggtagctatgctacgttcacttagtcataagcaaaatgacaatttactgagtgcaagatgaatacataacggcctcttcccctacctgcccctttttccttgcaacacgtcggttgccaaaccttctctctttccctgtcagcccacttttcccctttacatattgatgccttcaaaatcatctttggagaaagacacagaccagattgcctgtgtcattcgatgatttttttttttctttccaacatgtccctaatcttgggaaaataaacttctaaattgcttaagacctgtctcagatactttttggtttacaACCTTGACACGTATCAGAGTTTCAACCTATGTGACAGTCCAAGGAACAGTGAAAATTACTAAGGAAAGTACACTATTGGAGCTATT
i chlSab2.chr17            C 0 I 6285
s manLeu1.NW_012101600v1       66789 771 -    115496 CCAAGGAAATATCTAGATGTTGGATGATTTGGGG------------CTGGATAATGATGGATGTGAAGTTGTATTTTACTTGCACATGGTTAGCTGGGACGTTTCCCTCTCCACCATCTACCTAAGTAGTTTCCAGGCTCCCTGTATCAGATCAAACAGGTCGAGGTGAGCAAGTGTAGAATCCAGAGATGCCACATACACTGGGACGTGAGGATGTCTGTTCAGTCGTGTTTTGTATAAATtgtgaaagaaaaataaaaactgggcaccccaattcatcatgccaaaaggaaaaaattaagctgaaagctgagtcatgcaagaaattgcctttcttttggtttccaagcagatagctacag---ataaaaggttaaaaatatccccaccggtagctatgctacgttcacctagtcatatgcaaaatgacgatttactgagtgcaagatgaatacataactgcctcttcccctacctgcccctttttccttgcaacatgtgggttgccaaaccttctctctttccctgtcagcccacttttcccctttaaatatcgaggccttcaaaatcatctttggagaaagacacagaccagattgcctgtgtcattcgatta----tttttttctttccagcatgtccctaatcttgggaaaataaacttctaaactgcttaagacctgtctc--atactttttggtttacaACCTTGACACATATCAGAGTTTCAACCTATGTGACAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACACTATTGGAGCTATT
i manLeu1.NW_012101600v1   C 0 I 7922
s colAng1.NW_012115555v1      689618 771 -   1936607 CCAAGGAAATATCTAGATGTTGGATGATTTGGGG------------CTGGATAATGATGGATGTGAAGTTGTATTTTACTTGCACATGGTTAGCTGGGACGTTTTCCTCTCCACCACCTACCTAAGTAGTTTCCAGGCTCCCTGTATCAGATCAAACAGGTCCAGGTGAGCAGGTGTAGAATCCAGAGATGCCACATACACTGGGACATGAGGATGTCTGTTCAGTTGTGTTTTGTATAAATtgtgaaagaaaaataaaaactgggcaccccaattcgtcatgccaaaaggaaaaaattaagctgaaagctgagtcatgcaagaaattgcctttcctttggtttccaagcagatagcgacag---ataaaaggttaaaaatatccccaccggtagctatgctacgttcacctagtcatatgcaaaatgacgatttactgagtgcaagatgaatacgtaactgcctcttcc-ctacctgcccctttttccttgcaacatgtggactgccataccttctctctttccctgtcagccc-cttttcccctttaaatatcgaggccttcaaaatcatctttggagaaagacacagaccagattgcctgtgtcattcaatga----tttttttctttccagcatgtccctaatcttgggaaaataaacttctaaattgcttaagacctgtctcagatactttttggtttacaACCTTGACACATATCAGAGTTTCAACCTATGTGACAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACACTGTTGGAGCTATT
i colAng1.NW_012115555v1   C 0 I 6667
s calJac3.chr4             138640993 768 - 171630274 CCAAGGAATTATCTAGATATTGGATGA-TTGGGGCTGGACAATTTCCTGGATAATGATGGAGGTAAAGTTGTGTTTTACTTACACATGTTTAGCTGGAACATTTCCCACTCCACCATCTACCTAAGTCGTTTCCAGGCTGCCTGTAACAGATCAAACAGGTCCAGGTGAGCACATATAGAATCCAGAGCTGCCACATATATTGGGACATGAGGATGTC----CAGTTGTGTTTTGTATAAATtgtgaaagaaacataaaaacttggcacccc-aacgtttttcccaaaaggaaaaaattaagctgaaagctga------taagaaattgccttttcttcggttttcaagcagattgctacag---aaaaaaggttaaaagtatccccaccggtagctactctatgctcacctaatagtacgcaaagtgatgatttactgcgtgcaagatgaatacaccactgactattcccctacctgctccttttcccttacggcatgtggattggcacaccttcc-tctttccccaccagcccactttttccctttaaataccgaggccttcaaaatcagccttggagaaatacacagaccagattgtctgtgtaattccatga-----ttttttctttccagcatgtccctaaccttggcaaag-taaattctaaattgcttaagacctgtctcagttacgtttttgtttacaACATTGACATATATCAG--CGTCAATCTCTGTGACAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACAATCTTGGAGCCACT
i calJac3.chr4             I 1 I 6161
s saiBol1.JH378315            197048 778 +   1154217 CCAAAGAATTATCTAGATGTTGGATGATTTGAGGCTGGATAATTTCCTGGATAATGATGGATGTAAAGTTTTATTTTACTTGCACATGTTTAGCTGGAACGTTTCCCACTCCACCATCTACCTAAGTAGTTTCCAGGCTGCCTGTATCAGATCGAACAGGTCCAGGTGAGCACATAGAGAATCCAGAGCTGCCACATATATTGAGACATGTGGATGTC----CAGTTGTGTTTTGTATAAACtgtgaaagaaaaataaaaacttggcaccca-atttgccatccctaaaggaaaaaattaagctgaaagctgagtcatgcaagaaattgccttttcttcggttttcaagcagatagctacagaaaaaaaaaggttaaaagtgtccccaccagtagctactctatgctcacctaatagtatgcaaagcggtgacttactgagtgcaagatgaatacataactgactattcccctacctgctccttttcccttgcagcatgtggattggcataccttcc--ctttccccatcagcccacctttgccctttaaataccgaggccttcaaaatcatccctggagaaagacacagaccagattgcatgtgtcattccatga-----ttttttctttccagcatgtccctaaccttggcaaaattaacttctaaactgcttaagacctgtctcagatactttttcatttacaACATTGACATATATCAG--CTTCTACCTACGTAACAGTCCAAGGAAGAGTGAAAATTACCAAGGAAAGTACTATCTTGGAGGTATT
i saiBol1.JH378315         I 199 I 5994
s aotNan1.NW_018508875v1      268128 779 +    446445 CCAAGGAATTATCTAGATACTGAATGATTTGGGGCTGGATAATTTCCTGGATAATGATGGATGTAAAGTTGTATTTTACTTGCACATGTTTAGCTGGAACGTTTCCCACTCCACCATCTACCTAAGCAGTTTCCAGGCTGCCTGTATCAGATCAAACAGGTCCAGGTGAACACATATAGAATCCAGAGCTGCCACATATATTGGGACATGAGGATGTC----CAGTTGTGTTTTGTATAAATtgtgaaagaaaaataaaaacttggcaccccaatttgccgtcccaaaaggaaaaaattaagctgaaagctgagtcatgcaagaaattgccttttctttggttttcaagcagacagctacgg--acaaaagggttaaaagtatccccaccggtagccactctatgctcacctaatagtatgcaaagcaatgatttactgagtgcaagatgaatacataactgactattcccctacctgctccttttcccttacagcatgtatattggcataccttcc-tctctccccatcagcccccttttcccctttaaatacccaggccttcaaaatcatccttggagaaagacacagaccagattgcctgtgtaattccatga----tttttttctttccagcatgtccctaaccttggcaaaataagcttctaaattgcttaagacctgtctcagatacttttttgtttacaACATTGACATATATCAG--CTTCAATCTATGTGACAGTCCAAGGAAGAGTGAAAATTATCAAGGAAAGTACCATCTTGGAGCTATT
i aotNan1.NW_018508875v1   I 1 I 6114
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=742.000000
s hg38.chr6_KI270758v1_alt     35390 2 +     76752 CA
s panTro5.chr6             142738719 2 - 175400573 CC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140886691 2 - 173848474 CC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404468 2 +   2807050 CC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697480 2 - 122973662 ct
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       67560 7922 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14019139 3845 +  15232693 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e aotNan1.NW_018508875v1      268907 6114 +    446445 I
e calJac3.chr4             138641761 6161 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            197826 5994 +   1154217 I
e macFas5.chr4             138488610 0 + 170955103 C
e rheMac8.chr4             139321427 6306 - 172585720 I
e macNem1.NW_012013344v1      195607 6807 +    407600 I
e chlSab2.chr17             39646184 6285 +  71996105 I
e cerAty1.NW_012003702v1       68009 6322 +    463628 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      690389 6667 -   1936607 I

a score=107999.000000
s hg38.chr6_KI270758v1_alt     35392 35 +     76752 Attctccctccagtctgctt--ttcacctttaaatat
s panTro5.chr6             142738721 35 - 175400573 Attctccctccagtctgctt--ttcacctttaaatat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140886693 35 - 173848474 Attctccctccagtctgctt--ttcacctttaaatat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404470 35 +   2807050 Attctccctccagtctgctt--ttcacctttaaatat
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697482 35 - 122973662 gttctccctccagtctgctt--ttcacctttaaatat
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             138488610 26 + 170955103 -----------GGTCTGCTTTCTTTGCTTCTAAAGAT
i macFas5.chr4             C 0 I 6270
s calJac3.chr4             138647922 35 - 171630274 attcgccctccaacctgctt--ttctcctttaaatat
i calJac3.chr4             I 6161 C 0
s saiBol1.JH378315            203820 35 +   1154217 attccccctccaacctgctt--ttctcctttaaatat
i saiBol1.JH378315         I 5994 C 0
s cebCap1.NW_016107339v1    14022984 35 +  15232693 attctacctccaacctgctt--ttctcctttaaatat
i cebCap1.NW_016107339v1   I 3845 C 0
s aotNan1.NW_018508875v1      275021 35 +    446445 attccccctccaacctgctt--ttctcctttaaatat
i aotNan1.NW_018508875v1   I 6114 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       67560 7922 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e rheMac8.chr4             139321427 6306 - 172585720 I
e macNem1.NW_012013344v1      195607 6807 +    407600 I
e chlSab2.chr17             39646184 6285 +  71996105 I
e cerAty1.NW_012003702v1       68009 6322 +    463628 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      690389 6667 -   1936607 I

a score=353871.000000
s hg38.chr6_KI270758v1_alt     35427 115 +     76752 tgaaggcttctaaatcatctttggagaaagccacagacttgtcttctgggcattgtcttaaaccctagcaaaataaacttctaaattgattgagatctgtctcagata-tttttgg
s panTro5.chr6             142738756 116 - 175400573 tgaagccttctaaatcatctttggagaaagccacagacctgtcttctgggcattgtcttaaaccctagcaaaataaacttctaaattgattgagacctgtctcagatactttttgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140886728 116 - 173848474 tgaagccttctaaatcatctttggagaaagccacagacctgtcttctgggcattgtcttaaaccctagcaaaataaacttctaaattgattgagacctgtctcagatactttttgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404505 116 +   2807050 tgaagccttctaaatcatctttggagaaagccacagacctgtcttctgggcattgtcttaaaccctagcaaaataaacttctaaattgattgagacctgtctcagatactttttgg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697517 116 - 122973662 tgaaggcttctaaatcatctctggagaaagccacagacctgtcttctgggcattgtcttaaaccctagcgaaataaacttctaaattgattgagacctgtctcagatactttctgg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138647957 116 - 171630274 tgaagtcttcaaaaacatctttggagaaatgcacagacctgtcttctgggcattgtctgaaaccctagcaaaataaacttctaaattgattgagacctgtctccgatactttttgg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            203855 116 +   1154217 taaagtcttcaaaaacatctttggagaaacgcacagacctgtcttctggacattgtcttaaaccctagcaaaataaacttctaaattgattgagacctgtctcagatgctttttgg
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023019 116 +  15232693 tgaagtcttcaaaaacatctttggagaaatgcagagacctgtcttctgggcattgtcttaaaccctagcaaaataaacttctaaattgattgagacctgtctcagatactttttgg
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      275056 116 +    446445 tgaagtcttcaaaatcatctttggagaaaggcacacacctgtcttctgggcattgtcttaaaccctagcaaaataaacttctaaattgattgagacctgtctcagatactttttgg
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       67560 7922 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138488636 6270 + 170955103 I
e rheMac8.chr4             139321427 6306 - 172585720 I
e macNem1.NW_012013344v1      195607 6807 +    407600 I
e chlSab2.chr17             39646184 6285 +  71996105 I
e cerAty1.NW_012003702v1       68009 6322 +    463628 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      690389 6667 -   1936607 I

a score=23805.000000
s hg38.chr6_KI270758v1_alt     35542 5 +     76752 tttaG
s panTro5.chr6             142738872 5 - 175400573 tttaA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140886844 5 - 173848474 tttaA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404621 5 +   2807050 tttaA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697633 5 - 122973662 tttaA
i nomLeu3.chr1a            C 0 C 0
s macNem1.NW_012013344v1      202414 5 +    407600 TTTAA
i macNem1.NW_012013344v1   I 6807 C 0
s cerAty1.NW_012003702v1       74331 5 +    463628 TTTAA
i cerAty1.NW_012003702v1   I 6322 C 0
s calJac3.chr4             138648073 5 - 171630274 tttaA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            203971 5 +   1154217 tttaA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023135 5 +  15232693 tttaA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      275172 5 +    446445 tttaA
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       67560 7922 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e macFas5.chr4             138488636 6270 + 170955103 I
e rheMac8.chr4             139321427 6306 - 172585720 I
e chlSab2.chr17             39646184 6285 +  71996105 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      690389 6667 -   1936607 I

a score=15351.000000
s hg38.chr6_KI270758v1_alt     35547 2 +     76752 AG
s panTro5.chr6             142738877 2 - 175400573 AG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140886849 2 - 173848474 AG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404626 2 +   2807050 AG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697638 2 - 122973662 AG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327733 2 - 172585720 AG
i rheMac8.chr4             I 6306 C 0
s macFas5.chr4             138494906 2 + 170955103 AG
i macFas5.chr4             I 6270 C 0
s macNem1.NW_012013344v1      202419 2 +    407600 AG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74336 2 +    463628 AG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652469 2 +  71996105 AG
i chlSab2.chr17            I 6285 C 0
s manLeu1.NW_012101600v1       75482 2 -    115496 AG
i manLeu1.NW_012101600v1   I 7922 C 0
s calJac3.chr4             138648078 2 - 171630274 CG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            203976 2 +   1154217 AG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023140 2 +  15232693 AA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      275177 2 +    446445 AG
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15329872 6847 -  18854210 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      690389 6667 -   1936607 I

a score=36558.000000
s hg38.chr6_KI270758v1_alt     35549 5 +     76752 TATTG
s panTro5.chr6             142738879 5 - 175400573 TATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140886851 5 - 173848474 TATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404628 5 +   2807050 TATTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697640 5 - 122973662 TATTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327735 5 - 172585720 TATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138494908 5 + 170955103 TATTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202421 5 +    407600 TATTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74338 5 +    463628 TATTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652471 5 +  71996105 TATTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       75484 5 -    115496 TATTA
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138648080 5 - 171630274 TTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            203978 5 +   1154217 TATTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023142 5 +  15232693 TATTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      275179 5 +    446445 CATTG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15336719 5 -  18854210 TATCC
i otoGar3.GL873550         I 6847 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I
e colAng1.NW_012115555v1      690389 6667 -   1936607 I

a score=800521.000000
s hg38.chr6_KI270758v1_alt     35554 77 +     76752 TAACTATGGTCTTTGTACTTGCCGCACTGCCTCCTCTCCGTTTGATTTACCAATGCCCAATGAAGCCATGTTTTCAG
s panTro5.chr6             142738884 77 - 175400573 TAACTGTGGTCTTTGTACCTGCCGCACTGCCTCCTCCCCGTTTGATTTACCAATGCCCAATGAAGCCATGTTTTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140886856 75 - 173848474 TAACTATGGTC--TGTACCTGCCGCACTGCCTCCTCCCCGTTTGATTTACCAATGCCCAATGAAGCCATGTTTTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404633 77 +   2807050 TAACTATGGTCTTTGTACCTGCCGCACTGCCTCCTCCCCGTTTGATTTACCAATGCCCAATGAAGCCATGTTTTCAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697645 77 - 122973662 TGACTATGGTCTTTGTACCTGCCGCACTGCCTCCTCCCCGTTTGATTTACCAATGCCCAATGAAGCCATGTTTTCAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327740 77 - 172585720 TAACTATGGTCTTTGTACCTGCCTCACTGCCTCCTCCCCATTTGATTTACCAATGCCCAATGAAGCCATGTTTCTAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138494913 77 + 170955103 TAACTATGGTCTTTGTACCTGCCTCACTGCCTTCTCCCCATTTGATTTACCAATGCCCAATGAAGCCATGTTTCTAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202426 77 +    407600 TAACTATGGTCTTTGTACCTGCTGCACAGTCTCCTCCCCATTTGATTTACCAATGCCCAATGAAGCCATGTTTCCGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74343 77 +    463628 TAACTATGGTCTTTGTACCTGCCGCACTGCCTCATCCCCGTTTGATTTACCAATGCCCAATGAAGCCATGTTTCCGG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652476 77 +  71996105 TAACTATGGTCTTTGTACCTGCCGCACTGCCTCCTCCCCGTTTGATTTACCAGTGCCCAATGAAGCCATGTTTCTAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       75489 77 -    115496 TAACTATGGTCTTTGTACCTGCCTCACTGCCTCCTCCCCATTTGATTTACCAATGCCCAATGAAGCCATGTTTCTAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      697056 77 -   1936607 TAACTATGGTCTTTGTACCTGCCGCACTGCCTCCTCCCCGTTTGATTTACCAATGCCCAATGAAGCCATGTTTCCGG
i colAng1.NW_012115555v1   I 6667 C 0
s calJac3.chr4             138648085 77 - 171630274 TAACTATGTTCTTTGCACCTGCCGCACTGCGTCCTCCCCATTTGATTTACCAATGCCCAATGAAGCCATGTTTTTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            203983 76 +   1154217 TAACTCTGTTCTTTGCACCTGCCGCACTGTGTCCT-CCCATTTGATTTACCAATGCCCAATGAAGCCATATTTTTAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023147 77 +  15232693 TAACTATGTTCTTTGCACCTGCCGCACTGCGTCCTCCACATTTGATTTACCAATGCCCAATGAAGCCACGTTTTTAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      275184 77 +    446445 TAACTATGTTCTTTGCACCTGCCGCACTGCGTCCTCCCCATCTGATTTACCAATGCCCAATGAAGCCATGTTTTTAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15336724 74 -  18854210 TAACTATGGTCTCT--ATTTTCTGCACTGCC-CCTGCCCCTTTTATTTACCAATGTTCAATAAGAGCATGCTTTTTA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      101487 37210 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=42477.000000
s hg38.chr6_KI270758v1_alt     35631 4 +     76752 CAT--G
s panTro5.chr6             142738961 4 - 175400573 CAT--G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140886931 4 - 173848474 CAT--G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404710 4 +   2807050 CAT--G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697722 4 - 122973662 CAT--G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327817 4 - 172585720 CAT--A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138494990 4 + 170955103 CAT--A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202503 4 +    407600 CAT--G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74420 4 +    463628 CAT--G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652553 4 +  71996105 CAT--G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       75566 4 -    115496 CAT--A
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      697133 4 -   1936607 CAT--G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138648162 4 - 171630274 CAT--G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            204059 4 +   1154217 CAT--G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023224 4 +  15232693 CAT--G
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      275261 4 +    446445 CAT--G
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      138697 4 +   1371726 CAT--G
i proCoq1.NW_012150019v1   I 37210 C 0
s otoGar3.GL873550          15336798 6 -  18854210 TATTGG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            474426 1485 +    935526 I

a score=432501.000000
s hg38.chr6_KI270758v1_alt     35635 30 +     76752 CAAAACCCAGGAAAGAAATTCTACAAAACT
s panTro5.chr6             142738965 30 - 175400573 CAAAACCCAGGAAAGAAATTCTACAAAACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140886935 30 - 173848474 CAAAACCCAGGAAAGAAATTCTACAAAACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404714 30 +   2807050 CAAAACCCAGGAAAGAAATTCTACAAAACT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697726 30 - 122973662 CAAAACCCAGGAAAGAAATTCTACAAAACT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327821 30 - 172585720 CAAAACCCAGGAAAGAAATTCTACAAAACT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138494994 30 + 170955103 CAAAACCCAGGAAAGAAATTCTACAAAACT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202507 30 +    407600 CAAAACCCAGGAAAGAAATTCTACAAAACT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74424 30 +    463628 CAAAACCCAGGAAAGAAATTCTACAAAACT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652557 30 +  71996105 TAAAACCCAGGAAAGAAATTCTACAAAACT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       75570 30 -    115496 CAAAACCCAGGAAAGAAATTCTACAAAACT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      697137 30 -   1936607 CAAAACCCAGGAAAGAAATTCTACAAAACT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138648166 30 - 171630274 CAAAACCCAGGAAAGAAATTCTACAAAACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            204063 30 +   1154217 CAAAACCCAGGAAAGAAATTCTACAAAACT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023228 30 +  15232693 CAAAACCCAGGAAAGAAATTCTACAAAACT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      275265 30 +    446445 CAAAACCCAGGAAAGAAATTCTACAAAACT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      138701 30 +   1371726 GAAAACCCAGGAAAGAAATTCTACAAAACT
i proCoq1.NW_012150019v1   C 0 I 72
s otoGar3.GL873550          15336804 28 -  18854210 AAAAATATAGGAAAGAAATTCTACGAAC--
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            459944 30 -    935526 CAAAATCCAGCAAAGATATTCTTCAAAACT
i dasNov3.JH569424         n 1485 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I

a score=932460.000000
s hg38.chr6_KI270758v1_alt     35665 87 +     76752 TGCCAAGCAAGAACTCAATGTTGCACAAAACTCATAATGATAGTGCACCAGCTCATC-GAGAGGGGAGCCAATTCACAAACAAGCATG
s panTro5.chr6             142738995 87 - 175400573 TGCCAAGCAAGAACTCAGTGTTGCACAAAACTCATAATGATAGTGCACCAGCTCATC-AAGAGGGGAGCCAATTCACAAACAAGCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140886965 87 - 173848474 TGCCAAGCAAGAACTCAATGTTGCACAAAACTCATAATGATAGTGCACCAGCTCATC-GAGAGGGGAGCCAATTCACAAACAAGCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404744 87 +   2807050 TGCCAAGCAAGAACTCAATGTTGCACAAAACTCATAATGATAGTGCACCAGCTCATG-CAGAGGGGAGCCAATTCACAAACAAGCATG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697756 87 - 122973662 TGCCAAGCAAGAACTCAATGTTGCACGAAACTCATAATGATAGTGCAACAGCTCGTC-GAGAGGGGAGCCAATTCACAAACAAGCATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327851 87 - 172585720 TGCCAAGCAAGAACTCAATGTTGCACAAAACTCATAATGATAGTGCACCAGCACACC-GAGAGGGGAGCCAATTCACAAATAAGCACG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138495024 87 + 170955103 TGCCAAGCAAGAACTCAATGTTGCACAAAACTCATAATGATAGTGCACCAGCACACC-GAGAGGGGAGCCAATTCACAAATAAGCACG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202537 87 +    407600 TGCCAAGCAAGAACTCAATGTTGCACAAAACTCATAATGATAGTGCACCAGCTCACT-GAGAGGGTAGCCAATTCACAAATAAGCATG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74454 87 +    463628 TGCCAAGCAAGAACTCAATGTTGCACAAAACTCATAATGATAGCGCACCAGCTCACC-GAGAGGGGAGCCAATTCACAAATAAGCACA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652587 87 +  71996105 TGCCAAGCAAGAACTCAATGTTGCACAAAACTCATAATGATAGTGCACCAGCTCACC-GAGAGGGGAGCCATTTCACAAATAAGCACA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       75600 87 -    115496 TGCCAAGCAAGAACTCAATGTTGCACAAAACTCATAATGATAGTGCACCAGCTCACC-GAGAGGGGAGCCAATTCACAAATAAGCACG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      697167 87 -   1936607 TATCAAGCAAGAACTCAATGTTGTACAAAACTCATAATGATAGTGTACCAGCTCACC-GAGAAGGGAGCCAATTCACAAATAAACACG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138648196 86 - 171630274 TGCCAAGCAAGACCTCATTGTTACACAAAACTCACAATTATAGTGCACCAGCACACC-CAGAGGGGAG-CAACTCACAAATAAGCACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            204093 87 +   1154217 TGCCAAGCAAGAACTCACTGTTACACAAAACTCACAATGATAGTGCTCCAGCACACC-CAGAGGGAAGCCAATTCACAGATAAACACT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023258 87 +  15232693 TGCTAAGCAAGAACTCATTGTTACACAAAACTCATAATGATAGTGCACCAGCACACC-CACAGGGGAGCCAATTCACAGATAAGCACT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      275295 87 +    446445 TGCCAAGCAAGAACTCATTGTAACACAAAACTCATAATGATAGTGCACCAGCACACC-CAGAGGGGAGCCAATTCACAAATAAATACT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15336832 73 -  18854210 ------------ACTCATTGTTAGACGACACTCATAATGACAGCGCCGCAGCCCA---AGGGAGAGGGCCAGTTCACCAAGGTGCACT
i otoGar3.GL873550         C 0 I 4
s dasNov3.JH569424            459974 88 -    935526 TATCCAGGAAGGACTCAGCATTAGATAAAACTCATAATAATTGTTCACCAGTATGCCAGAGATGAGAGCCAATTGTGAAATAGGCATC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      138731 72 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I

a score=485504.000000
s hg38.chr6_KI270758v1_alt     35752 38 +     76752 -----AGAAAATCTAGATGAAGGCCATTTTACCAGCCCTAAAA
s panTro5.chr6             142739082 38 - 175400573 -----AGAAAATCTAGATGAAGGCCATTTTACCAGCCCTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887052 38 - 173848474 -----AGAAAATCTAGATGAAGTCCATTTCACCAGCCCTAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404831 38 +   2807050 -----AGAAAATCTAGATGAAGGCCATTTTACCAGCCCTAAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697843 38 - 122973662 -----AGAAAATCTAGATGAAGGCCATTTTACCAGCTCTAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327938 38 - 172585720 -----AGAAAATCTAGGTGAAGGCCATTTTACCAGCCCTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138495111 38 + 170955103 -----AGAAAATCTAGGTGAAGGCCATTTTACCAGCCCTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202624 38 +    407600 -----AGAAAATCCAGATGAAGGCCATTTTACCAGCCTTAAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74541 38 +    463628 -----AGAAAATCCAGATGAAGGCCATTTTACCAGCCCTAAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652674 38 +  71996105 -----AGAAAATCCAGATGAAGGCCATTTTACCAGCCCTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       75687 38 -    115496 -----AGAAAATCTAGGTGAAGGCCATTTTACCAGCCCTAAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      697254 38 -   1936607 -----AGAAAATCCAGATAAAGGCCATTTTACCAGCCCTAAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138648282 38 - 171630274 -----AGAATACCCAGATGAAGACCATTTTACCAGCCCTGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            204180 38 +   1154217 -----AGAATATCCAGATGAAGGCCATTTTACCAGCCCTGAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023345 38 +  15232693 -----AGAATATCCAGGTGAAGGCCATTTTACCAGCCCTGAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      275382 38 +    446445 -----AGAATATCCAGATGAAGGCCATTTTACCAGCCCTGAAA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      138803 38 +   1371726 -----AGAAAATCTCGGTGAAGGCCATTTCAACAGCCCTAAAA
i proCoq1.NW_012150019v1   I 72 C 0
s otoGar3.GL873550          15336909 37 -  18854210 -----ATAAAATCTAGATGAAAGGCA-TTCAACAGCCCCTCAA
i otoGar3.GL873550         I 4 C 0
s dasNov3.JH569424            460062 42 -    935526 ATTTCTGAAAATCTAGAT-AAGGCCATTTGAGCAACCCTAAAA
i dasNov3.JH569424         C 0 n 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I

a score=27846.000000
s hg38.chr6_KI270758v1_alt     35790 2 +     76752 AA
s panTro5.chr6             142739120 2 - 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887090 2 - 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404869 2 +   2807050 AA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697881 2 - 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327976 2 - 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138495149 2 + 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202662 2 +    407600 AA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74579 2 +    463628 AA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652712 2 +  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       75725 2 -    115496 AA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      697292 2 -   1936607 AA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138648320 2 - 171630274 AA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            204218 2 +   1154217 AA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023383 2 +  15232693 AA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      275420 2 +    446445 AA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      138841 2 +   1371726 AA
i proCoq1.NW_012150019v1   C 0 I 589
s otoGar3.GL873550          15336946 2 -  18854210 AA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            460104 0 -    935526 I

a score=13600.000000
s hg38.chr6_KI270758v1_alt     35792 1 +     76752 G
s panTro5.chr6             142739122 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887092 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404871 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697883 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327978 1 - 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138495151 1 + 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202664 1 +    407600 G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74581 1 +    463628 G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652714 1 +  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       75727 1 -    115496 G
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      697294 1 -   1936607 G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138648322 1 - 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            204220 1 +   1154217 G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14023385 1 +  15232693 G
i cebCap1.NW_016107339v1   C 0 I 8681
s aotNan1.NW_018508875v1      275422 1 +    446445 G
i aotNan1.NW_018508875v1   C 0 I 7383
s otoGar3.GL873550          15336948 1 -  18854210 G
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      138843 589 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            460104 0 -    935526 I

a score=7397.000000
s hg38.chr6_KI270758v1_alt     35793 1 +     76752 C
s panTro5.chr6             142739123 1 - 175400573 C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887093 1 - 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404872 1 +   2807050 C
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697884 1 - 122973662 C
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327979 1 - 172585720 C
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138495152 1 + 170955103 C
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202665 1 +    407600 C
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74582 1 +    463628 C
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652715 1 +  71996105 C
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       75728 1 -    115496 C
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      697295 1 -   1936607 C
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            204221 1 +   1154217 C
i saiBol1.JH378315         C 0 I 7688
s otoGar3.GL873550          15336949 1 -  18854210 T
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e proCoq1.NW_012150019v1      138843 589 +   1371726 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648323 0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            460104 0 -    935526 I

a score=61155.000000
s hg38.chr6_KI270758v1_alt     35794 8 +     76752 TATTTCTg
s panTro5.chr6             142739124 8 - 175400573 TATTTCTg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887094 8 - 173848474 TATTTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404873 8 +   2807050 TATTTCTg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697885 8 - 122973662 TATTTCTg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327980 8 - 172585720 TATTTCTG
i rheMac8.chr4             C 0 I 11
s macFas5.chr4             138495153 8 + 170955103 TATTTCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202666 8 +    407600 TATTTCTG
i macNem1.NW_012013344v1   C 0 I 11
s cerAty1.NW_012003702v1       74583 8 +    463628 TATTTCTG
i cerAty1.NW_012003702v1   C 0 I 11
s chlSab2.chr17             39652716 8 +  71996105 TATTTCTG
i chlSab2.chr17            C 0 I 11
s manLeu1.NW_012101600v1       75729 8 -    115496 TATTTCTG
i manLeu1.NW_012101600v1   C 0 I 1010
s colAng1.NW_012115555v1      697296 8 -   1936607 TATTTCTG
i colAng1.NW_012115555v1   C 0 I 462
s calJac3.chr4             138648323 8 - 171630274 TATTTATG
i calJac3.chr4             C 0 I 9792
s otoGar3.GL873550          15336950 8 -  18854210 TATTCATG
i otoGar3.GL873550         C 0 I 6
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e proCoq1.NW_012150019v1      138843 589 +   1371726 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e dasNov3.JH569424            460104 0 -    935526 I

a score=245522.000000
s hg38.chr6_KI270758v1_alt     35802 300 +     76752 accgggcgtggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggaggatcacgcggtcaggagatcgagaccaccctagctaacatggtgaaacctcgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactgggaaggctgaggcaggagaatggtgtgaacccggaaggcagagcttgcagtgagccgagatcatgccactgcactccagcctgggcaacagagcaagactccgtctca-aaaaaaaaaGCTATTTCCA
s panTro5.chr6             142739132 300 - 175400573 accgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaactccgtctctactaaaaatacaaaaaattagccgggcgtggtggggggcgcctgtagtcccagctgctcagaaggctgaggcaggagaatggtgtgagcctgggaggcggagcttgcagtgagcggaaatcatgccactgcactccagcccgggcaacagagttagactccgtctca-aaaaaaaaaGCTATTTCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887102 299 - 173848474 AAcgggcgcggtggctcatgcctgtaatcccagcactttgggaggccaaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcagaaggctgaggcaggagaatggtgtgagcccggggggcggagcttgcagtgagccgagatcacgccactgcactccagcccaggcgacagagcgagactccgtctc--aaaaaaaaaGCGATTTCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2404881 299 +   2807050 accgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcatgaggtcaggagatggagaccatcctggctaacacagtgaaactccgtctctactaaaaatacaaaaaattagccgggcgtggtgg-gggcgcctgtagtcccagctactcggaaggctgaggcaggagaatggtgtgagcccaggaggcggagcttgcagtaagccgaaatcatgccactgcactccagcccgggcaacagagcgagactccgtctca-aaaaaaaaaGCTATTTCTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45697893 289 - 122973662 gccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggaccacgaggtcaggagattgagac------------cacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgtaaggctgaggcaggagaatggtttgaggccgggaggcggagcctgcagtgagccgagattgcgccactgcactccagcctgggcgacagagcgagactccgtctcacaaaaaaaaGGCTGTTTCTG
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       75737 1010 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e proCoq1.NW_012150019v1      138843 589 +   1371726 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e macFas5.chr4             138495161   0 + 170955103 C
e rheMac8.chr4             139327988  11 - 172585720 I
e macNem1.NW_012013344v1      202674  11 +    407600 I
e chlSab2.chr17             39652724  11 +  71996105 I
e cerAty1.NW_012003702v1       74591  11 +    463628 I
e otoGar3.GL873550          15336958   6 -  18854210 I
e dasNov3.JH569424            460104   0 -    935526 I
e colAng1.NW_012115555v1      697304 462 -   1936607 I

a score=35897.000000
s hg38.chr6_KI270758v1_alt     36102 37 +     76752 TTTATGAATTTAACTataaataactatatagtataaa
s panTro5.chr6             142739432 37 - 175400573 CTTATGAATTTAACTATAAATAACTATATAGTATAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887401 37 - 173848474 TTTATGAATTTAACTATAAATAACTATATAGTATAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2405180 37 +   2807050 TTTATGAATTTAACTATAAATAACTATATAGTGTAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45698182 37 - 122973662 TTTATGAATTTAACTataaataactatatagtataaa
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             138495161 19 + 170955103 TTTATGAATTAAACTATAa------------------
i macFas5.chr4             C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       75737 1010 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e proCoq1.NW_012150019v1      138843 589 +   1371726 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e rheMac8.chr4             139327988 11 - 172585720 I
e macNem1.NW_012013344v1      202674 11 +    407600 I
e chlSab2.chr17             39652724 11 +  71996105 I
e cerAty1.NW_012003702v1       74591 11 +    463628 I
e otoGar3.GL873550          15336958  6 -  18854210 I
e dasNov3.JH569424            460104  0 -    935526 I
e colAng1.NW_012115555v1      697304 462 -   1936607 I

a score=1365.000000
s hg38.chr6_KI270758v1_alt     36139 1 +     76752 t
s panTro5.chr6             142739469 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887438 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2405217 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45698219 1 - 122973662 t
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550          15336964 1 -  18854210 T
i otoGar3.GL873550         I 6 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       75737 1010 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e proCoq1.NW_012150019v1      138843 589 +   1371726 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e macFas5.chr4             138495180 0 + 170955103 C
e rheMac8.chr4             139327988 11 - 172585720 I
e macNem1.NW_012013344v1      202674 11 +    407600 I
e chlSab2.chr17             39652724 11 +  71996105 I
e cerAty1.NW_012003702v1       74591 11 +    463628 I
e dasNov3.JH569424            460104 0 -    935526 I
e colAng1.NW_012115555v1      697304 462 -   1936607 I

a score=514528.000000
s hg38.chr6_KI270758v1_alt     36140 137 +     76752 aactataattgatatgaaaatatataaaGTT--------attcagttgttaatggatacttaagttgttttgatgttttgctattaggaatgaagttgtaatgaacttgcaatag---ttcttgatgtatgttctagagtagcattgt
s panTro5.chr6             142739470 137 - 175400573 AACTATAattgatatgaaaatatataaagtt--------attcagttgttaatggatacttaagttgttttgatgttttgctattaggaatgaagttgtaatgaacttgcaatag---ttcttgatgtatgttctagagtagcattgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887439 137 - 173848474 AACTATAattgatatgaaaatatataaagtt--------attcagttgttaatggatacttaagtggttttgatgttttgctattaggaatgaagttgtcaagaacttgcaacag---ttcttgatgtatgttctagagtagtattgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2405218 140 +   2807050 AACTATAattgatatgaaaatatataaagtt--------attcagttgttaatggatacttaagttgttttgatgttctgctcttaggaatgaagttgtcatgaacttgcaatagttcttcttgatgtatgttcaagagaagtattgt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45698220 140 - 122973662 aactataattgatatgaaaatatataaaGTT--------attcagttgttaatggatgcttaagttgttttgatgttttgctattaggaatgaagttgtcatgaacttgcaatagttcttcttgatgtatgttcaagagtagtattgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139327999 126 - 172585720 AACTATAATTGATATGAAAATATATAAAGTT--------attcagttgttaatggatacttaagttgttttgatgttttgctattaggaataaa---gtcatgaacttgcaataattcttcttgatgtatgttcaag-----------
i rheMac8.chr4             I 11 C 0
s macFas5.chr4             138495180 118 + 170955103 --------ttgatatgaaaatatataaagtt--------attcagttgttaatggatacttaagttgttttgatgttttgctattaggaataaa---gtcatgaacttgcaataattcttcttgatgtatgttcaag-----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202685 126 +    407600 AACTATAATTGATATGAAAATATATAAAGTT--------ATTCAGTTGTTAATGGATACTTAAGTTGTTTTGATGTTTTGCTATTAGGAATAAA---GTCATGAACTtgcaataattgttcttgatgtatgttcaag-----------
i macNem1.NW_012013344v1   I 11 C 0
s cerAty1.NW_012003702v1       74602 126 +    463628 AACTATAATTGATATGAAAATATATAAAGTT--------ATTCAGTTGTTAATGGATACTTAAGTTGTTTTGATGTTTTGCTATTAGGAATAAA---GTCACGAACTtgcaataattgttcttgatgtatgttcaag-----------
i cerAty1.NW_012003702v1   I 11 C 0
s chlSab2.chr17             39652735 126 +  71996105 AACTATAattgatatgaaaatatataaagtt--------attcagttgttaatggatacgtaagttgttttgatgttttgctattaggaataaa---gtcatgaacttgcaataattgttcttgatgtatgttcaag-----------
i chlSab2.chr17            I 11 C 0
s otoGar3.GL873550          15336965 138 -  18854210 ACCTATAATTGACACGAAGGTATATAaagttatttacccattcaattgttaatggctacttg----ttttcaatgttttgctattacaaataaagttgttaggaacttgcaatagtttctccaggtatatattcaagagtag------
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       75737 1010 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e proCoq1.NW_012150019v1      138843 589 +   1371726 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e dasNov3.JH569424            460104   0 -    935526 I
e colAng1.NW_012115555v1      697304 462 -   1936607 I

a score=2135924.000000
s hg38.chr6_KI270758v1_alt     36277 421 +     76752 agtagtaatgtagtatgataatgtatatatattttcaaccttactatgttatgctgacttgttttccaaaatgatcctaacaatttctatttccttcag--aagtctgttggtagaaacattgacccacatcc--ttgctaggttttgatatttttattgttttttcagtgtggcgtttatttacatttctctgacttataatgaagagtttgaaattttttcacatattcacatgtcatttatacatgt-------tactataaaatgtttcttcttgcctttacca--ttttttttctcagaaaaatatagtcctttactaattgatttgta-----------------------ggaggcctttctatgttctgggtactaatccttttcatggtttaatatgttgtaagtatctttatccaGTTTACCAAAAaaa-tttcctctctctagtgag-
s panTro5.chr6             142739607 422 - 175400573 agtagtaatgtagtatgataatgtatatatattttcaaccttactatgttatgctgacttgttttccaaaatgatcctaacaatttctatttccttcag--aagtctgttggtagaaacattgacccacatcc--ttgctaggttttgatatttttattgttttttcagtgtggtgtttatttacatttctctgacttataatgaagcatttgaaattttttcacatattcacatgtcatttatacatgt-------tgctataaaatgtttcttcttgcctttacca--ttttttttctcagataaatatagtcctttactaattgatttgta-----------------------ggaggccttcctatgttctgggtactaaTCCTTTTCATGGTTTAATATGTTGTAAGTATCTTTATCCAGTTTACCAAAAAaaatttcctctctctagtgag-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887576 423 - 173848474 agtagtaacgtagtatgataatggatatatattttcaacgttactatgttatgctgacttgttttccaaaatgatcctaacaatttctatttccttcagaaaagtctattggtagaaacattgacccacatcc--ttgccaggttttgatatttttattgttttttcagtgtggtgtttatttacatttctctgacttataatgaagagtttgaaattttttcacatattcacatgtcatttatacatgt-------tactataaaatgttttttcttgcctttacca--ttttttttctcagataaatatagtcctttactaattgatttgta-----------------------ggaggcttttctatgttctgggtactaatccttttcatggtttaatatgttgtaagtatctttacccagtttatCAAAAaaa-tttcctctctctagtgag-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2405358 421 +   2807050 agtagtaatgtagtatgataatgtatatatattttcagcgctactatgttatgctgacttgttttccaaaatgatcctaacaatttctatttccttcag--aagtctgttggtagaaacattgacccacatca--ttgctatgttttgatattttcattattttttcagtgtggcgtttattttcatttctctgacttataatgaggagtttgaaattttttcacatattcacatgtcatttatacatgt-------tgctataaaatgtttcttcttgcctttacca--ttttttttctcagataaatatagtcctttactaattgatttcta-----------------------ggaggccttcctatgttctgggtactaATCCTTTCCATGGTTTAGTATGTTGTAAGTATCTTTACCCAGTTTACCAAAAaaa-tttcctctctctagtgag-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45698360 421 - 122973662 agtggtaacgtagtatgataatgtatatatattttcaacgttactatgttatgctgacttgttttccaaaatgatcctaacaatttctatttccttcag--aagtctgttggtagaaacattgacccacatcc--ttgccgggttttgatatttttattgtttttccagtgtggcgtttatttacatttctctgacttataatgaagagtttgaaattttttcacacatttacatgttatttatacatgt-------tgctataaaatgtttcttcttacctttacca--ttttttttctcagagaaatatagtcatttactaattgatttgta-----------------------ggaggtctttctatgttctaggtactaatcgctgtcatggtttaatatgttgtaagtatctttacccaGTTTACCAAGAaaa-tttcctctctctagtgag-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139328125 422 - 172585720 agtagtaatgtagtatcataatgtatatatattttcaacgttactatgttatgttgatttgttttccaaaatgattctaacaatttatatttccttcag--aggtctgttggtagaaacattgacccacatcc--ttgctaggttttgatatttttattcttttttcagtgtggtgtttatttacacttctctgacttataatgaagagtttgaaatgttttcacacattcacatgtcatttatacatgt-------tgctataaaatgtttcttcttgcctttacca-tttttttttctcagataaatatagtccttcactaattgatttgta-----------------------ggaggcctttctatgttctgggtactaatccttttcatggtttaatatgttgcaagtatctttacccagtttACCAAAAaaa-tttcctctctctagtgag-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138495298 422 + 170955103 agtagtaatgtagtatcataatgtatatatattttcaacgttactatgttatgttgatttgttttccaaaatgattctaacaatttatatttgcttcag--aggtctgttggtagaaacattgacccacatcc--ttgctaggttttgatatttttattcttttttcagtgtggtgtttatttacacttctctgacttataatgaagagtttgaaatgttttcacacattcacatgtcatttatacatgt-------tgctataaaatgtttcttcttgcctttacca-tttttttttctcagataaatatagtccttcactaattgatttgta-----------------------ggaggcctttctatgttctgggtactaatccttttcatggtttaatatgttgcaagtatctttacccaGTTTACCAAAAaaa-tttcctctctctagtgag-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      202811 422 +    407600 agtagtattgtagtatgataatgtatatatattttcaaccttactatgttatgttgatttgttttccaaaatgatcctaacaatttatatttccttcag--aggtctgttggtagaaacattgacccacatcc--ttgctacgttttgatatttttattattttttcagtgtggcctttatttacatttctctgacttataatgaagagtttgaaattttttcacatattcgcatgtcatttatacatgt-------tgctataaaatgtttcttcttgcctttacca-tttttttttctcagataaatatagtccttcactaattgatttgtc-----------------------agaggcctttctatgttctgggtactaatccttttcatggtttaatatgttgcaagtatctttacccaGTTTACCAAAAaac-tttcctctctctagtgag-
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       74728 421 +    463628 agtagtaatgtagtatcataatgtatatatattttcaacgttactatgttatgttgatttgttctccaaaatgatcctaacaatttatatttccttcag--aggtctgttggtagaaacattgacccacatcc--ttgctaggttttgatatttttattattttttcagtgtggcctttatttacatttctctgacttataatgaagagtttgaaattttttcacatattcacatgtcatttatacatgt-------tgctataaaatgtttcttcttgcctttacca--ttttttttctcagataaatatagtccttcactaattgacttgta-----------------------ggaggcctttctatgttctgggtactaatccttttcatggtttaatatgctgcaagtatctttacccaGTTTACCAAAAaaa-tttcctctctctagtgag-
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39652861 421 +  71996105 agtagtaatatagtatgataatgtatatatattttcaacgttactatgttatgttgatatgttttccaaaatgatcctaacaatttatatttccttcag--aggtctgttggtagaaacattgacacacatcc--ttgctaggttttgatattttttttattttttcagtgtggcctttatttacatttctctgacttaaaatgaagagtttgaaattttttcacacattcacatgtcatttatacatgt-------tgctataaaatgtttcttcttgcctttacca--ttttttttctcagataaatatagtccttcactaattgacttgta-----------------------ggaggcctttctatgttctgggtactaatccttttcatgttttaatatgctgcaagtatctttacccaGTTTACCAAAAaaa-tttcctctctctagtgag-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      697766 420 -   1936607 agtagtaatgtagtatgataatgtatatatattttcagtgttactgtgttatgttgacttgttttccaaaatgatcctaacaatttatatttccttcag--aggtctgttggtagaaacattgacccatatcc--ttgctgggttttgatatttttattgttttttcagtgtggtgtttgtttacatttctctgacttataatgaagagtttgaaattttttcacatattcacatatcatttatacatgt-------tgctgtaaaatgtttcttcttgcctttacca---tttttttctcagataaatatagtcctttactaattgatttgta-----------------------ggaggcctttctatgttctgggtactaatccttttcatggtttaatatgttgcaagtatctttacctagtttatcaaaaaaa-tttcctctctctagtgag-
i colAng1.NW_012115555v1   I 462 C 0
s otoGar3.GL873550          15337103 435 -  18854210 ------aatgaactattataac--aaatatattttcagtgctaccacataatgttgacttgttttccagaatgatcctaataa----tatttctaccaa--tagcacattggtataaatattgtaccacatccaattgatacattttgacatttttattatttttccagtgttatctttgt----gtttttctgattagccatgaggagttagataaactttcatgtatatatgtgtcatttgtgtatccaatcctatgctatagaaattttctccttgcctttcccactgtttttccctcagataaattcattcctttactagttgatttgtgtataaaccttaactacttgatttgtagatctttacatgttctagatactgaGCCTTTT-ATGGTTTAACATGCCGCACCTG-ATTTACCCAGCGTACTAGGGC---tttcccctctgcag-gaga
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       75737 1010 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e proCoq1.NW_012150019v1      138843 589 +   1371726 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e dasNov3.JH569424            460104   0 -    935526 I

a score=2463922.000000
s hg38.chr6_KI270758v1_alt     36698 410 +     76752 tgattccaatcagcatataaacatgccacggcatttccttttccctaaatccaactctgctaatgaatttttacttctaatctgaaggaaactcttaaaaatattgggctgcacctgttatttccattcctccccattcttcttccactcttcacagatcagg----ctacagtccacatctttaactgaa---ctccttgtcactgacatgtgttagctccatgttgccaaatccaatggtcatctctaggatgtcattttattcatcatatcagaagca-ttttatgtagttaaccactactgcatcattgatgtattttcttgacttgttactaaacctcactgtcttgagattctcatcacacgagaataacagccagatctcagcctgccttgccaagtctcc-catcttccca
s panTro5.chr6             142740029 410 - 175400573 tgattccaatcagcatataaacatgccacggcatttccttttccctaaatccaactctgctaacgaatttttacttctaatctgaaggaaacccttaaaaatactgggctgcacctgttatttccattcctccccattcttcttccactcttcacagatcagg----ctacagtccacatctttaactgaa---ctccttgtcactgacatgttttagctcaatgttaccaaatccaatggtcatctctaggacgtcattttattcatcatatcagaagca-ttttatgtagttaaccactactgcatcattgatgtattttcttgacttgttactaaacctcactgtcctgggattctcatcacacgagaataacagccagatctcagcctgccttgccaagtctcc-catcttccca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140887999 409 - 173848474 tgattccaatcagcatataaacatgccacggcatttccttttccctaaatccaactctgctaacgaatttttacttctaatctgaaggaaacccttaaaaatact-ggcttcacctgttatttccattcctccccattcttcttccactcttcacagatcagg----ctacagtccacatctttaactaaa---ctccttgtcactgacatgtgttagctccatgttgccaaatccaatggtcatctctaggacgtcattttattcatcatatcagaagca-ctttatgtagttaaccactactgcatcattgatgtattttcttgacttgttactaaatctcactgtcctgggattctcatcacacaagaataacagccaggtctcagcctaccttgccaagtcccc-catcttccca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2405779 409 +   2807050 tgattccaatcagtatataaatacgccactgcatttccttttccctaaatccaactctgctaatgaatttttacttctaatctgaaggaaacccttaaaaatact-ggctgcacctgttattttcattcttccccattcttctttcactcttcacagatcagg----ctacagttcacatctttaactgaa---ctccttgtcactgacatgtgttagctccatgttgccaaatccagtggtcatctctaggacgtcattttattcatcatatcagaagca-ctttatgtagttaaccactactgcatcattgatgtattttcttgacttgttactaaacctcactgtcctgggattctcatcacatgagaataacagccatgtctcagcctgccttgccaagtcccc-catcttccca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45698781 406 - 122973662 tgattccaatcagcatataaacatgccactgcatttccttttccctaaatccaactctgctaatgaatttttacttctaatctgaaggaaacccttaaaaatactgggctgcacctgttatttccattcctcctcattcttctttcactcttcacagatcagg----ctacaatccacatctttaactgaa---ctccttgtcactgacatatgttagctccatgttgccaaatccaatggtcatctctaggatgtcattttattcatcatatcagaagca-ttttgtgtagtt----actactgcatcattgatgtattttcttgacttgttactaagcctcactgtcttgggattctcatcacacaagaataacagccaggtctcagcctgccttgccaagtctcc-catcttccca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139328547 410 - 172585720 tgattccaatcagtatataaacacgccaccgcatttcgttttccctaaatccaactttgctaatgaatttttacttctaatctgaaggaaacccttaaaaatactgggctgcacctgttatttccattcctccccattcttctttcactcttcacagatcagg----ctacagttcacatctttaactgag---ctccttgtcatcgacatgtgttagctcaatgttgccaaatccaatggtcatctctaggatgtcattttattcgtcatatcagaagca-ttttatgtagttaacagctactgcatcattgatgtattttcttgacttgttactaaaccttactgtcctgggattctgatcacacaagaataacagccaggtttcagcctgccttgccaagtcccc-catcttccca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138495720 410 + 170955103 tgattccaatcagtatataaacacgcCACCGCATTTCGTTTTCCCTAAATCCAACTTTGCTAATGAATTTTTACTTCTAATCTGAAGGaaacccttaaaaatactgggctgcacctgttatttccattcctccccattcttctttcactcttcacagatcagg----ctacagttcacatctttaactgag---ctccttgtcatcgacatgtgttagctcaatgttgccaaatccaatggtcatctctaggatgtcattttattcgtcatatcagaagca-ttttatgtagttaacagctactgcatcattgatgtattttcttgacttgttactaaaccttactgtcctgggattctgatcacacaagaataacagccaggtttcagcctgccttgccaagtcccc-catcttccca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      203233 410 +    407600 tgattccaatcagtatataaacatgccaccgcatttccttttccctaaatccaactctgctaatgaatttttacttctaatctgaaggaaacccttaaaaatactgggctgcacctgttatttccattcctccccattcttctttcactcttcacagatcagg----ctacagttcacatctttaactgag---tcccttgccatcgacatgtgttagctcaatgttgccaaatcgaatggtcatctctaggatgtcattttattcgtcatatcggaagca-ttttatgtagttaacagctactgcatcattgatgtattttcttgacttgttactaaaccttactgtcctgggattctgatcacacaagaataacagccaggtttcagcctgccctgccaagtcctc-catcttccca
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       75149 410 +    463628 tgattccaatcagtatataaacatgccaccgcatttccttttccctaaatccaactttgctaatgaatttttacttctaatctgaaggaaacccttaaaaatactgggctgcacctgttatttccattcttccccattcttctttcactcttcacagatcagg----ctacagttcacatctttaactgag---ctccttgtcatcgacatgtgttagctcaatgttgccaaatccaatggtcatctctaggatgtcattttattcgtcatatcggaagca-ttttatgtagttaacagttactgcatcattgatgtattttcttgacttgttactaaaccttactgtcctgggattctgatcacacaagaataacagccaggtttcagcctgccttgccaagtcctc-catcttccca
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39653282 410 +  71996105 tgattccaatcagtatataaacacgcCACCGCATTTCCTTTTCCCTAAATCCAACTCTGCTAATGAATTTTTACTTCTAATCTGAAGGaaacccttaaaaatactgggcttcacctgttatttccattcctccccattcttctttcactcttcacagatcagg----ctacagttcacatctctaactgag---ctccttgtcatcgacatgtgttagctcaatgttgccaaatccaatggtcatctctaggatgtcattttattcgtcatatcggaagca-ttttatgtagttaacagttactccatcactgatgtattttcttgacttgttactaaaccttactgtcctgggattctgatcacacaagaataacagccaggtttcagcctgccttgccaagtcctc-catcttccca
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      698186 410 -   1936607 tgattccAATCAGTATATAAACACGCCACCGCATTTCCTTTTCCCTAAATCCAACTCTGCTAATGAATTTTTACTTCTAATCTGAAGGaaacccttaaaaatactgggctgcacttgttatttccattcctccccattcttctttcactcttcacagattagg----ctacagttcacatctttaactgag---ctccttgtcatcgacatgtgttagctcaatgttgccaaatccaacggtcatctctaggatgtcattttattcgtcatatcggaagca-ttttatgtagttaacagttactgcatcattgatgtattttcttgacttgttactaaaccttactgtcctgggattctgatcacacaaggataacagccaggtttcagcctgccttgccaagtcctc-catcttccca
i colAng1.NW_012115555v1   C 0 C 0
s proCoq1.NW_012150019v1      139432 414 +   1371726 tgattccagtcagcatacaaacgcactgtggtattttcttttccctaaatccaactctgctaacgtacttttacttctaagttgaaggaaatccctaaaaatgtt-ggctgcacttgtcatatccattcccttccattcttccttcaaccaacacaaatcagg----caacagttcacacctttaactgaaatccttcttgtaattattgtaagttagctcagtgttgccaaatccaatggccggttctaggatgccaatttgttcatcgtattagaagtatttttacatcgttaatcactactgcataatcgacatattttcttgatttgtcactaaacattactctcttgggagtctcatcactctggactgacagtcatatctgaggctgctacacggattcccctcgtcttccca
i proCoq1.NW_012150019v1   I 589 C 0
s otoGar3.GL873550          15337538 414 -  18854210 tgattcccatcagcacacaaacatgcaaaagcattttctttttcttaagtctgactatgataatggacttttacttctactttgaagaaaagccctaaaaatatt-ggctgcccctgccat-ttcatcccctcccatccttccttcaacctacacaaatcaggtaaccaacagtccacatctttaaccaacatcctccctgctattgtcctaagttagctcaatgttgctaactccaatggttgcttctaggatgtcaatttattcattgtattagaagta-ttatacatagttaatcactgctgcataatcaacatattttcttgatttgtcagtaaacattgctctcttgggattctcatcacaccagaccgatagtcctatctctgtctgctatgctgagtccc--cAACCTCTca
i otoGar3.GL873550         C 0 I 185
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       75737 1010 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e dasNov3.JH569424            460104   0 -    935526 I

a score=266300.000000
s hg38.chr6_KI270758v1_alt     37108 43 +     76752 acttctaaatgactgagggcccaggactcatctcttgcatttg
s panTro5.chr6             142740439 43 - 175400573 acctctaaatgactgagggcccaggactcatctcttgcatttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140888408 43 - 173848474 acctctaaatgactgagggcccaggactcatctcttgcatttc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406188 43 +   2807050 acctctaaatgactgagggcccaggactcatctcttgcatttc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699187 43 - 122973662 acctctaaatgactgagggcccaggactcatctcttgcatttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139328957 43 - 172585720 acctctaaatgactgagggcctaggactcaactcttgcatttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138496130 43 + 170955103 acctctaaatgactgagggcctaggactcaactcttgcatttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      203643 43 +    407600 acctctaaatgactgagggcctaagactcatctcttgcatttg
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       75559 43 +    463628 acctctaaatgactgagggcctaggactcatctcttgcatttg
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39653692 43 +  71996105 acctctaaatgactgagggcctaggactcatctcttgcatttg
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      698596 43 -   1936607 acctctaaatgactgagggcctaagactcatctcttgcatttg
i colAng1.NW_012115555v1   C 0 C 0
s proCoq1.NW_012150019v1      139846 43 +   1371726 acctctaaatgattgagggctacaggcccatctcttgtatttg
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15338137 42 -  18854210 ACGCCTGCATGACTGAGGGCTCAGGGCTCATCTGCTGC-TTTG
i otoGar3.GL873550         I 185 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       75737 1010 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e dasNov3.JH569424            460104  0 -    935526 I

a score=425669.000000
s hg38.chr6_KI270758v1_alt     37151 64 +     76752 tttcctatgcatcttcat--tccagaatctcccatggattcccacaactaagcacaattctttgtt
s panTro5.chr6             142740482 64 - 175400573 tttcctatgcatcttcat--tccagaatctcccatggattcccacaactaagcacaattctttgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140888451 64 - 173848474 tttcctatgcatcttcat--tccagaagctctcatgtattcccataactaagcacaattctttgtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406231 63 +   2807050 tttcctatgcatcttcat--tccagaagctctcatgtatt-ccataactaagcacaattctttgtt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699230 64 - 122973662 tttcctatgcatcttcat--tccagaagctctcatgcattcccataactaagcacaattctttgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139329000 63 - 172585720 -ttcctatgcatcttcat--tccagaagctctcatgcattcccataactaagcacaattctttgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138496173 63 + 170955103 -ttcctatgcatcttcat--tccagaagctctcatgcattcccataactaagcacaattctttgtt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      203686 64 +    407600 tttcctacgcatcttcat--tccagatgctctcatgcattcccataactaagcacaattctttgtt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       75602 64 +    463628 tttcctatgcatcttcat--tccagaagctctcatgcattcccataactaagcacaattctttgtt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39653735 64 +  71996105 tttcctatgcatcttcat--tccagaagctctcatgcattcccataactaagcacaattctttgtt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       76747 64 -    115496 TTTCCTATGCATCTTCAT--TCCAGATGCTCTCATGCATTCCCATAACTAAGTACAATTCTTTGTT
i manLeu1.NW_012101600v1   I 1010 C 0
s colAng1.NW_012115555v1      698639 64 -   1936607 tttcctatgcatcttcat--tccagacgctctcatgcattcccataactaagtacaattctttgtt
i colAng1.NW_012115555v1   C 0 C 0
s proCoq1.NW_012150019v1      139889 65 +   1371726 ttgtctgtgtaccttcattctccagaagctcttatccatgcccacaacgaagcacagtt-tttgtt
i proCoq1.NW_012150019v1   C 0 I 96
s otoGar3.GL873550          15338179 65 -  18854210 TTGTCTGTGTACCGTCCTTCTCTAGAATCTTTCATTCATGCCTGCAGCTTAGCATATTT-TCTGTT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e dasNov3.JH569424            460104  0 -    935526 I

a score=531137.000000
s hg38.chr6_KI270758v1_alt     37215  94 +     76752 gaagtttctctaacttacattactagccttgacATGTTGCccatagctttgaagcatgacttg------------------------------------------------------------------------aaaccaagctttgcatatttcttctgtcctt
s panTro5.chr6             142740546  94 - 175400573 gaagtttctctaacttacattactagccttgacATGTTGCACATAGCTTTGAAGCATGACTTG------------------------------------------------------------------------AAACCAAGCTTTGCATAtttcttctgtcctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140888515  94 - 173848474 gaagtttctctaacttacattactagccttgacATGTTGCCCATAGCTTTGAAGCATGACTTG------------------------------------------------------------------------AAACCAAGCTTTGCATAtttcttctattctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406294  94 +   2807050 gaagtttctctaacttacattactagccttgacATGTTGCctgtagctttgaagcatgacttg------------------------------------------------------------------------aaaccaagctttgcatatttcttctgttctt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699294  92 - 122973662 gaagtttctctaacttacattactagccttgacATGTTGCccatagctttgaagcatggcttg------------------------------------------------------------------------aaatcaagctttgcatatttcttc--ttgtt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139329063  93 - 172585720 aaagttgctctaacttacatt-ctagccttgacatgttgcctgTAGCTTTGAAGCGTCACTTG------------------------------------------------------------------------AAACCAAGCTTTGCATAtttcttctgttctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138496236  93 + 170955103 aaagttgctctaacttacatt-ctagccttgacatgttgcctgTAGCTTTGAAGCGTGACTTG------------------------------------------------------------------------AAACCAAGCTTTGCATAtttcttctgttctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      203750  93 +    407600 aaagttgctctaacttacatt-ctagccttgacATGTTGCctgtagctttgaagcatgacttg------------------------------------------------------------------------aaactaagctttgcatatttcttctgttctt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       75666  93 +    463628 gaagttgctgtaacttacatt-ctagccttgacATGTTGCctgtagctttgaagcatgacttg------------------------------------------------------------------------aaaccaagctttgtatatttcttctgttctt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39653799  93 +  71996105 aaagttgctctaacttacatt-ctagccttgacatgttgcctgTAGCTTTGAAGTGTGACTTG------------------------------------------------------------------------AAACCAAGCTTTGTATAtttcttctgttctt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       76811  93 -    115496 GAAGTTGCTGTAACTTACATT-CTAGCCTTGACATGTTGCctgtagctttgaagcgtgacttg------------------------------------------------------------------------aaaccaagctttgcatatttcttctgttctt
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      698703  93 -   1936607 gaagttgctgtaacttacatt-ctagccttgacATGTTGCctgtagctttgaagcgtgacttg------------------------------------------------------------------------aaaccaagctttgcatatttcttctgttctt
i colAng1.NW_012115555v1   C 0 C 0
s otoGar3.GL873550          15338244 162 -  18854210 GAAG----TCTAAATCGCATCACTAGCCCTGACATATTCCCTGTAGGTTTGAAGTGTAACTTGGAATCACACTTTTTTTTCCCCCCTCAGGATTGGGGGaattttttttttttttattaaatGGTAACTATGTATGAATCACACTTTGAATATTcattttgtcctt
i otoGar3.GL873550         C 0 I 3
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e proCoq1.NW_012150019v1      139954  96 +   1371726 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e dasNov3.JH569424            460104   0 -    935526 I

a score=1176963.000000
s hg38.chr6_KI270758v1_alt     37309 177 +     76752 tttcaaataagttttggctattgtagatcctttgtattttcatataaattttagaattgtctattgccacaaagaaacccagtgggaatattgatcaagatcgtgttg---agaactgttatttcaaaaatatcaattcttcccaaatcaaaatatattatatctctttacacatttaga
s panTro5.chr6             142740640 177 - 175400573 tttcaaataagttttggctattgtagatcctttgtattttcatataaattttagaattgtctattgccacaaagaaacccagtgggaatattgatcaagattgtgttg---agaactgttatttcaaaaatatcaattcttcccaaatcaaaatatattatatctctttacacatttaga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140888609 177 - 173848474 tttcaagtacgttttggctattgtagatccttttcatttttgtataaatattagaattctctatggctacaaaaaaacccagtgggaatattgatcaagattgtgttg---agaattggtatttcgaaaatatcaattctacccaaatcaaaacatattatacctctttacacatttaga
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406388 177 +   2807050 tttcaaatatattttgactattgtagatcttttgcattttcatataaattttagaattgtctattgccacaaagaaacccagtgggaatattgatcaagattgtgttg---agaattgttatttcaaaaatatcaattcttcccaaatcaaaacatattatatctctttacacatttaga
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699386 177 - 122973662 tttcaagtaagttttggctattgtagatcctttgtattttcatataaattttagaattgtctattgccacaaagaaacccagtgggaatattgatcaagattgtgttg---agaactgttatttcaaaaatatcgattcttcccaaatcaaaatatattatatctctttacacatttaga
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139329156 176 - 172585720 tctcaaatacattttggctattgtagatcctttgcgttttcatataaatattagaattgtctattgtta-aaaaatacccagtgggaatattgatcaagattgtgttg---agaattggtatttcaaaaatattaattcttcccaaatcaaaacatattttatctctttatagatttaga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138496329 176 + 170955103 tctcaaatacattttggctattgtagatcctttgtgttttcatataaatattagaattgtctattgtta-aaaaatacccagtgggaatattgatcaagattgtgttg---agaattggtatttcaaaaatattaattcttcccaaatcaaaacatattttatctctttatagatttaga
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      203843 176 +    407600 tttcaaatacgtttcggctactgtagatcctttgcattttcatataaatattagaattgtctattgcta-aaaaatacccagtgggaatattgatcaagattgtgttg---agaattggtatttcaaaaatattaattcttcccaaatcaaaacatattttatctctttatagatttaga
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       75759 176 +    463628 tttcaaatacattttggctattgtagattctttgcgttttcatataaatattagaattgtctattgcta-aaaaatacccagtgggaatattgatcaagattgtgttg---agaattggtatttcaaaaatattaattcttcccaaatcaaaacatattttatctctttatagatttaga
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39653892 176 +  71996105 tttcaaatacattttggctactgtagatcctttgcgttttcatataaatattagaattgtctattgcta-aaaaatacccagtgggaatatttatcaagattgtgttg---agaattggtatttcaaaaatattaattcttcccaaatcaaaacatattttatctctttatagatttaga
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       76904 176 -    115496 tttcaaatacattttggctattgtagattctttgtgttttcatataaatattagaattgtctattgcta-aaaaatacccagtgggaatattgatcaagattgtgttg---agaattggtatttcaaaaatattaattcttcccaaatcaaaacatattttatctctttatagatttaga
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      698796 176 -   1936607 tttcaaatacattttggctattgtagatcctttgcattttcatataaatattacaattgtctattgcta-aaaaatacccagtgggaatattgatcaagattgtgttg---agaattggtatttcaaaaatatgaattcttcccaaatcaaaacatattttatctctttatagatttaga
i colAng1.NW_012115555v1   C 0 C 0
s proCoq1.NW_012150019v1      140050 180 +   1371726 tttcaaaatagttttggctattttaggtcctttgcatttccatataaattttaaagttgtctatttctataaagaaatgcagtgggaatattgatcaagattgcgttgaagagacttggtatttcaacaagatcaattcttctaaaaccaaaacatgccatatctcttcacatgttcagg
i proCoq1.NW_012150019v1   I 96 C 0
s otoGar3.GL873550          15338409 169 -  18854210 tttcaaaataggcttggttatattagatccttttcattttcatttgaattttagaattgtctttttctacaaagaaatttgatggaaacattgatcaggat----------agaattggtatttcaacaataccgattctttt-aaaccaaaacataacatatcccttcacatatttggg
i otoGar3.GL873550         I 3 I 269
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e dasNov3.JH569424            460104   0 -    935526 I

a score=1034487.000000
s hg38.chr6_KI270758v1_alt     37486 165 +     76752 attttatcagtttctctcatcagtattttatagtttc----------acatcacacatctttcggttcagtttatgtctaagtattttatgtttttattgctgtcataatgaagtgat-ttttaaattttatatatgatattctgctg-tggtgtatagaattacaatttgtttttg
s panTro5.chr6             142740817 165 - 175400573 attttatcagtttctctcatcagtattttattgtttc----------acgtcacacatctttcggttcagtttatgtctaagtattttatgtttttattgctgtcataatgaagtgat-ttttaaattttatatgtgatattctgctg-tggtgtatagaattacaatttgtttttg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140888786 165 - 173848474 attttatcattttctttcatcaatattttattgtttc----------acatcacacatcttttggttcagtttatgtctaagtattttatgtttttattgctgtcataatgaagtgat-ttttaaattttatatgtgatattctgctg-tggtgtatagaattacgatttgtttttg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406565 165 +   2807050 attttatcagtttctctcatcagtgttttacagtttc----------acatcacacatcttttggttcaagttatgtctaagtattttatgtttttattgctgtcataatgaagtgat-tttaaaattttatatgtgatattctgctg-tggtgtatagaattacaatttgtttttg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699563 165 - 122973662 attgtatcagtttctctcatcagtattttacagtttc----------acatcgcacatcttttggttcagtttatgtctaagtattttatgtttctattgctgtcataatgaagtgat-ttttaaattttatatgtgatattctgctg-tggtgtatagaattacaatttgtttttg
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139329332 164 - 172585720 attttatcagtttctctcatcaatattttatagtttc----------acatcacacatcttttggttcaatttctgtctaagtattttatgtttttattggtatcataatgaagtgat-ttt-atattttttatgtgatattctgctg-tggtgtatagaattacaatttgtttttg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138496505 164 + 170955103 attttatcagtttctctcatcaatattttatagtttc----------acatcacacatcttttggttcaatttctgtctaagtattttatgtttttattggtatcataatgaagtgat-ttt-atattttttatgtgatattctgctg-tggtgtatagaattacaatttgtttttg
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204019 164 +    407600 gttttatcagtttctctcatcaatattttatagtttc----------acatcacacatcttttggttcaatttctgtctaagtattttatgtttttattgctatcataatgaagtgat-tgt-atattttttctgtgatattctgccg-tggtgtatagaattacaatttgtttttg
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       75935 160 +    463628 attttctcagtttctctcatcaatattttatagtttc----------acatcacacatcttttggttcaatttctgtctaagtattttatgtttttattgctatcataatgaagtgat-tgt-ata----ttatgtgatattctgctg-tggtgtatagaattacaatttgttattg
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654068 159 +  71996105 attttatcagtttctctcatcaatattttatagtttc----------acatt-cacatcttttggttcaatt----tctaagtattttatgtttttattgctatcataatgaagggat-tgt-atattttttatgtgatattctgctg-tggtgtatagaattacaatttgtttttg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77080 164 -    115496 attttatcagtttctctcatcaatattttatagtttc----------acatcacacatcttttggttcaatttctgtctaagtattttatgtttttattggtatcataatgaagtgat-ttt-atattttttatgtgatattctgctg-tggtgtatagaattacaatttgtttttg
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      698972 163 -   1936607 attttatcagtttctctcatcagtattttatagtttc----------acatcacacatcttttggttcaatttctgtctaagtattttatgtttttattgctagcataatgaagtgat-ttt-atattttttatgtgat-ttctgctg-tggtgtatagaattacaatttgtttttg
i colAng1.NW_012115555v1   C 0 C 0
s proCoq1.NW_012150019v1      140230 173 +   1371726 atttca-tagtttctct-atcagtgctttgtagttttcactgcagagacattacacatctttcggctcaatttattgctaagtgctttctggttttgttgctattgcgatgaaattac-ttt-ttattttatatgcaggattctactgctggtatatagaattataactgtttttta
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15338847 170 -  18854210 atttcattagtttctctcatctgtgctttgtagttttcactgaagagacgtaacacatct---ggctcaactcatcactaagtgctttatgttttagttgctattataattaaatcactttt-ttattttatatgcaagattctactgattgtatacagaattgtaa---tttttta
i otoGar3.GL873550         I 269 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14023386 8681 +  15232693 I
e aotNan1.NW_018508875v1      275423 7383 +    446445 I
e calJac3.chr4             138648331 9792 - 171630274 I
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            204222 7688 +   1154217 I
e dasNov3.JH569424            460104   0 -    935526 I

a score=1599764.000000
s hg38.chr6_KI270758v1_alt     37651 143 +     76752 tattttaccattgttaaattcacacattctaggca-ttttcaatagctctctt-agggttttatatataagcaatcaAGCTTTCCAGGCTGTAATGTTTACTGTTTGCCAAAAGGAGTCTGAAATTATGTGAAATCTGCTAGGCT
s panTro5.chr6             142740982 143 - 175400573 tattttaccattgttaaattcacacgttctaggca-ttttcaatagctctctt-agggttttatatataagcaatcaAGCTTTCCAGGCTGTAATGTTTACTGTTTGCCAAAAGGAGTCTGAAATTATGTGAAATCTGCTAGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140888951 143 - 173848474 tattttaccattgttaaattcacacattctaggca-ttttcaatagctctctt-agggttttatatataagcaatcaAGCTTTCCAGGCTGCAATGTTTACTCTTCGCCAAAAGGAGTCTGAAATTTTGTGAAATCTGCTTGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406730 143 +   2807050 tattttaccattgttaaattcacacattctaggca-ttttcaatagctctctt-agggttttatatataagcaatcaAGCTTTCCAGGCTGCAATGTTTACTCTTTGCCAAAAGGAGTCTGAAATTATGTGAAATCTGCTTGGTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699728 143 - 122973662 tattttaccattgttaaattcacacattctaggca-ttttcaatagctctctt-agggttttatatataagcaatcaAGCTTTCCAGGCTGTAATGTTTACTCTTTGCCAGAAGGAGTCTGAAATTATGTGAAATCTGCTAGGCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139329496 143 - 172585720 tattttgccattgttaaattcacacattctaggca-ttttcaatagctctctt-agggttttttatataagcaatcaAGCTTTCCAGGCTACAATGTTTACTCTTTGCCAAAAGAAGTCTGAAATTATGTGAAATCTGCTTGGTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138496669 143 + 170955103 tattttgccattgttaaattcacacattctaggca-ttttcaatagctctctt-agggttttttatataagcaatcaAGCTTTCCAGGCTACAATGTTTACTCTTTGCCAAAAGAAGTCTGAAATTATGTGAAATCTGCTTGGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204183 144 +    407600 tattttaccgttgttaaattcacacattctaggcatttttcaataactccctt-agggttttttatataagcaatcaAGCTTTCCAGGCTACAATGTTTACTCTTTGCCAAAAGGAGTCTGAAATTATGTGAAATCTGCTTGGTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76095 143 +    463628 tattttgccattgttaaattcacacattctaggca-ttttcaatagctctctt-agggttttttatataagcaatcaAGCTTTCCAGGCTACGATGTTTACTCTTTGCCAAAAGGAGTCTGAAATTATGTGAAATCTGCTTGGTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654227 143 +  71996105 tattttaccattgttaaattcacacattctagaca-ttttcaatagctctctt-agggttttttatataagcaatcaAGCTTTCCAGGCTGCAATGTTTACTCTTTGCCAAAAGGAGTCTGAAATTATGTGAAATCTGCTTGGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77244 143 -    115496 tattttgccgttgttaaattcacacattctgggca-ttttcaatagctctctt-agggttttttatataagcaatcaagtTTTCCAGGCTACAATGTTTATTCTTTGCCAAAAGGAGTCTGAAATTATGTGAAATCTGCTTGGTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699135 144 -   1936607 tattttaccgttgttaaattcacacgttctaggca-ttttcaatagctctcttaagggttttttatataagcaatcaAGCTTTCCAGGCTACAGTGTTTACTCTTTGCCAAAAGGAGTCTGAAATTATGTGAAATCTGCTTGGTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138658123 137 - 171630274 TGTTTTGTCACTGTTAAATTCACACATTCTAGGCA-TTTTCAATAGCTCTCTT-AGGGTTTTATATATAAGTAATCATGCTTTCCAGGCTGCAAGGTTTATTCTTTGTCAAAAGGAATCTGAAATTATGTAAAATCTGC------
i calJac3.chr4             I 9792 C 0
s saiBol1.JH378315            211910 137 +   1154217 TATTTTGTCACTGTTAAATTCACACATTCTAGGAA-TTTTCAATAGCTCTCTT-AGGGTTTTATATATAAGCAATCATGCTTTCCAGGCTGCAAGGTTTATTCTTTGTCAAAAGGAGTCTGAAATTATGTAAAATCTGC------
i saiBol1.JH378315         I 7688 C 0
s cebCap1.NW_016107339v1    14032067 137 +  15232693 TATTTTGTCACTGTTAAATTCACACATTCTAGGCA-TTTTCAAAAGCCCTCTT-AGGGTTTTATATATAAGCAATCATGCTTTCCAGGCTGCAAGGTTTATTCTTTGGCAAAAGGAGTCTGAAATTATGTAAAATCTGC------
i cebCap1.NW_016107339v1   I 8681 C 0
s aotNan1.NW_018508875v1      282806 136 +    446445 TATTTTGTCACTGTTAAATTCACACATTCTAGGCA-TTTTCAATAGCTCTCTT-AGGGTTTTATATATAAGCAATCATGC-TTCCAGGCTGCAAGGTTTATTCTTTGTCAAAAGGAGTCAAAAATTATGTAAAATCTGC------
i aotNan1.NW_018508875v1   I 7383 C 0
s proCoq1.NW_012150019v1      140403 137 +   1371726 tattttattaactt------cacacattctaggcatttttttacagctttctt-agggttctgtatgtaaacaatcatgCTTTCCAGGCTGCAATGTTTATTCTTTGCC-AAAGGAGTATGAAATTGTGTGAACTCTGCTTGGCT
i proCoq1.NW_012150019v1   C 0 I 186
s otoGar3.GL873550          15339017 126 -  18854210 tattttgctgtagt--------taagttctaggcattttttcatagctttctt-agga----------aggcagtcatgccattcaggctgcaaTGTTTATTCTTTGCCAAAAGGAGTGTGAAATTGTGTGTACTCTCCCTGGCT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            460104   0 -    935526 I

a score=74640.000000
s hg38.chr6_KI270758v1_alt     37794 11 +     76752 TAAACTAATTT
s panTro5.chr6             142741125 11 - 175400573 TAAACTAATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140889094 11 - 173848474 TAAACTAATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406873 11 +   2807050 TAAACTAATTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699871 11 - 122973662 TAAACTAATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139329639 11 - 172585720 TAAACTAATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138496812 11 + 170955103 TAAACTAATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204327 11 +    407600 TAAACTAATTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76238 11 +    463628 TAAACTAATTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654370 11 +  71996105 TAAACTAATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77387 11 -    115496 TAAACTAATTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699279 11 -   1936607 TAAACTAATTT
i colAng1.NW_012115555v1   C 0 C 0
s otoGar3.GL873550          15339143 11 -  18854210 TAAATTAtttt
i otoGar3.GL873550         C 0 I 117
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14032204  0 +  15232693 C
e proCoq1.NW_012150019v1      140540 186 +   1371726 I
e aotNan1.NW_018508875v1      282942  0 +    446445 C
e calJac3.chr4             138658260  0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            212047  0 +   1154217 C
e dasNov3.JH569424            460104  0 -    935526 I

a score=52752.000000
s hg38.chr6_KI270758v1_alt     37805 8 +     76752 TTAAAATA
s panTro5.chr6             142741136 8 - 175400573 TTAAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140889105 8 - 173848474 TAAAAATA
i panPan2.chr6             C 0 I 335
s gorGor5.CYUI01000036v1     2406884 8 +   2807050 TTAAAATA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699882 8 - 122973662 TTAAAATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139329650 8 - 172585720 TTAAAATA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138496823 8 + 170955103 TTAAAATA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204338 8 +    407600 TTAAAATA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76249 8 +    463628 TTAAAATA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654381 8 +  71996105 TTAAAATA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77398 8 -    115496 TTAAAATA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699290 8 -   1936607 TTAAAATA
i colAng1.NW_012115555v1   C 0 C 0
s otoGar3.GL873550          15339271 8 -  18854210 TTGAAATA
i otoGar3.GL873550         I 117 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14032204 0 +  15232693 C
e proCoq1.NW_012150019v1      140540 186 +   1371726 I
e aotNan1.NW_018508875v1      282942 0 +    446445 C
e calJac3.chr4             138658260 0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            212047 0 +   1154217 C
e dasNov3.JH569424            460104 0 -    935526 I

a score=15334.000000
s hg38.chr6_KI270758v1_alt     37813 3 +     76752 ATA
s panTro5.chr6             142741144 3 - 175400573 ATA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406892 3 +   2807050 ATA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699890 3 - 122973662 ATA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139329658 3 - 172585720 ATA
i rheMac8.chr4             C 0 I 646
s macFas5.chr4             138496831 3 + 170955103 ATA
i macFas5.chr4             C 0 I 303
s macNem1.NW_012013344v1      204346 3 +    407600 ATA
i macNem1.NW_012013344v1   C 0 I 313
s cerAty1.NW_012003702v1       76257 3 +    463628 ATA
i cerAty1.NW_012003702v1   C 0 I 313
s chlSab2.chr17             39654389 3 +  71996105 ATA
i chlSab2.chr17            C 0 I 310
s manLeu1.NW_012101600v1       77406 3 -    115496 ATA
i manLeu1.NW_012101600v1   C 0 I 313
s colAng1.NW_012115555v1      699298 3 -   1936607 ATA
i colAng1.NW_012115555v1   C 0 I 313
s otoGar3.GL873550          15339279 3 -  18854210 ACG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14032204 0 +  15232693 C
e proCoq1.NW_012150019v1      140540 186 +   1371726 I
e aotNan1.NW_018508875v1      282942 0 +    446445 C
e calJac3.chr4             138658260 0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            212047 0 +   1154217 C
e dasNov3.JH569424            460104 0 -    935526 I
e panPan2.chr6             140889113 335 - 173848474 I

a score=-1294.000000
s hg38.chr6_KI270758v1_alt     37816 1 +     76752 -A
s panTro5.chr6             142741147 1 - 175400573 -A
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406895 1 +   2807050 -A
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699893 1 - 122973662 -A
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550          15339282 1 -  18854210 T-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       77409 313 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14032204 0 +  15232693 C
e proCoq1.NW_012150019v1      140540 186 +   1371726 I
e aotNan1.NW_018508875v1      282942 0 +    446445 C
e calJac3.chr4             138658260 0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            212047 0 +   1154217 C
e macFas5.chr4             138496834 303 + 170955103 I
e rheMac8.chr4             139329661 646 - 172585720 I
e macNem1.NW_012013344v1      204349 313 +    407600 I
e chlSab2.chr17             39654392 310 +  71996105 I
e cerAty1.NW_012003702v1       76260 313 +    463628 I
e dasNov3.JH569424            460104 0 -    935526 I
e panPan2.chr6             140889113 335 - 173848474 I
e colAng1.NW_012115555v1      699301 313 -   1936607 I

a score=3910.000000
s hg38.chr6_KI270758v1_alt     37817 10 +     76752 -AAG-TTGAAAG
s panTro5.chr6             142741148 10 - 175400573 -AAG-TTGAAAG
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406896 11 +   2807050 -AAGTTTGAAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699894 10 - 122973662 -AAG-TTGAAAT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             138497137 10 + 170955103 -AGG-TTGGAAT
i macFas5.chr4             I 303 C 0
s otoGar3.GL873550          15339283 10 -  18854210 TATT-TTAAAA-
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e manLeu1.NW_012101600v1       77409 313 -    115496 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14032204  0 +  15232693 C
e proCoq1.NW_012150019v1      140540 186 +   1371726 I
e aotNan1.NW_018508875v1      282942  0 +    446445 C
e calJac3.chr4             138658260  0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            212047  0 +   1154217 C
e rheMac8.chr4             139329661 646 - 172585720 I
e macNem1.NW_012013344v1      204349 313 +    407600 I
e chlSab2.chr17             39654392 310 +  71996105 I
e cerAty1.NW_012003702v1       76260 313 +    463628 I
e dasNov3.JH569424            460104  0 -    935526 I
e panPan2.chr6             140889113 335 - 173848474 I
e colAng1.NW_012115555v1      699301 313 -   1936607 I

a score=74902.000000
s hg38.chr6_KI270758v1_alt     37827 18 +     76752 AAAAATCCAGGTCAATTT
s panTro5.chr6             142741158 18 - 175400573 AAAAAGCCAGGTCAATTT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406907 18 +   2807050 AAAAAGCCAGGTCAATTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699904 18 - 122973662 AAAAAGCTAGGTCAATTT
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             138497147 18 + 170955103 AAAAAGCCAGGTCAATTT
i macFas5.chr4             C 0 I 661
s macNem1.NW_012013344v1      204662 18 +    407600 AAAAAGCCAGGTCAATTT
i macNem1.NW_012013344v1   I 313 C 0
s cerAty1.NW_012003702v1       76573 18 +    463628 AAAAAGCCACGTCAATTT
i cerAty1.NW_012003702v1   I 313 C 0
s chlSab2.chr17             39654702 18 +  71996105 AAAAAGCCAGGTCAATTT
i chlSab2.chr17            I 310 C 0
s manLeu1.NW_012101600v1       77722 18 -    115496 AAAAAGCCAGGTCAATTT
i manLeu1.NW_012101600v1   I 313 C 0
s colAng1.NW_012115555v1      699614 18 -   1936607 AAAAAGCCAGGTCAATTT
i colAng1.NW_012115555v1   I 313 C 0
s otoGar3.GL873550          15339293 18 -  18854210 TATAAGTCAACTTAATTA
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14032204  0 +  15232693 C
e proCoq1.NW_012150019v1      140540 186 +   1371726 I
e aotNan1.NW_018508875v1      282942  0 +    446445 C
e calJac3.chr4             138658260  0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            212047  0 +   1154217 C
e rheMac8.chr4             139329661 646 - 172585720 I
e dasNov3.JH569424            460104  0 -    935526 I
e panPan2.chr6             140889113 335 - 173848474 I

a score=3652.000000
s hg38.chr6_KI270758v1_alt     37845 1 +     76752 A
s panTro5.chr6             142741176 1 - 175400573 A
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406925 1 +   2807050 A
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699922 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139330307 1 - 172585720 a
i rheMac8.chr4             I 646 C 0
s macFas5.chr4             138497826 1 + 170955103 A
i macFas5.chr4             I 661 C 0
s macNem1.NW_012013344v1      204680 1 +    407600 A
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76591 1 +    463628 A
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654720 1 +  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77740 1 -    115496 A
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699632 1 -   1936607 A
i colAng1.NW_012115555v1   C 0 C 0
s otoGar3.GL873550          15339311 1 -  18854210 A
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14032204 0 +  15232693 C
e proCoq1.NW_012150019v1      140540 186 +   1371726 I
e aotNan1.NW_018508875v1      282942 0 +    446445 C
e calJac3.chr4             138658260 0 - 171630274 C
e canFam3.chr12             70378021 7050 -  72498081 I
e saiBol1.JH378315            212047 0 +   1154217 C
e dasNov3.JH569424            460104 0 -    935526 I
e panPan2.chr6             140889113 335 - 173848474 I

a score=100949.000000
s hg38.chr6_KI270758v1_alt     37846 10 +     76752 AAAAATAAAG
s panTro5.chr6             142741177 10 - 175400573 AAAAATAAAG
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406926 10 +   2807050 AAAAATAAAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699923 10 - 122973662 AAAAATAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139330308 10 - 172585720 aaaaataaaG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138497827 10 + 170955103 AAAAATAAAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204681 10 +    407600 AAAAATAAAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76592 10 +    463628 AAAAATAAAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654721 10 +  71996105 AAAAATAAAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77741 10 -    115496 AAAAATAAAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699633 10 -   1936607 AAAAATAAAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138658260  8 - 171630274 --AAATAAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            212047  8 +   1154217 --AAATAAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14032204  8 +  15232693 --AAATAAAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      282942  8 +    446445 --AAATAAAG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      140726 10 +   1371726 AAAATTAAAG
i proCoq1.NW_012150019v1   I 186 C 0
s otoGar3.GL873550          15339312 10 -  18854210 AAAATTAAAG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            460104  0 -    935526 I
e panPan2.chr6             140889113 335 - 173848474 I

a score=509861.000000
s hg38.chr6_KI270758v1_alt     37856 43 +     76752 AATATTTTAAAAATAGTTTCCCATGCCCAATTTTATGTTAAAA
s panTro5.chr6             142741187 43 - 175400573 AATATTTTAAAAATAGTTTCCCATGCCCAATTTTATGTTAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140889448 43 - 173848474 AATATTTAAAAAATAGTTTCCCATGCCCAATTTTATGTTAAAA
i panPan2.chr6             I 335 C 0
s gorGor5.CYUI01000036v1     2406936 43 +   2807050 AATATTTTCAAAATAGTTTCCCATGCCCAATTTTATGTTAAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699933 42 - 122973662 -AAATTTTAAAAATAGTTTCCCATGCCCAATTTTATGTTAAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139330318 43 - 172585720 AATATTTTCAAAATAGTTTCCCATGCCCAATTTTATGCTAAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138497837 43 + 170955103 AATATTTTCAAAATAGTTTCCCATGCCCAATTTTATGCTAAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204691 43 +    407600 AATATTTTCAAAATAGTTTCCCATGCCCAATTTTATGCTAAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76602 43 +    463628 AATATTTTCAAAATAGTTTCCCATGCCCAATTTTATGCTAAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654731 43 +  71996105 AATATTTTCAAAATAGTTTCCTATGCCCAATTTTATGCTAAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77751 43 -    115496 AATATTTTCAAAATAGTTTCCCATGCCCAATTTTATGCTAAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699643 43 -   1936607 AATATTTTCAAAATAGTTTCCCATGCCCAATTTTATGCTAAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138658268 43 - 171630274 AATATTTTTAAAAGAGGTTCCCATGCCCAATTTTATGTTAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            212055 43 +   1154217 AATAGTTTAAAAATAGTTTCCCATGCCCAATTTTATGTTAAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14032212 43 +  15232693 AATATTTTAAAAATAGTTACCCATGCCCAATTTTATGTTAAAA
i cebCap1.NW_016107339v1   C 0 I 322
s aotNan1.NW_018508875v1      282950 43 +    446445 AATATTTTTAAAATAGTTTCCCGTGCCCAATTTTATGTTAAAA
i aotNan1.NW_018508875v1   C 0 I 342
s proCoq1.NW_012150019v1      140736 43 +   1371726 AATACTTTAAAAATTGTTTCTTATACCCAATTTTATGTCGAAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15339322 41 -  18854210 AATACTTT--AAATTGTTTCCTATACCCAATTTTCCGTTAAAT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            460104  0 -    935526 I

a score=3735.000000
s hg38.chr6_KI270758v1_alt     37899 1 +     76752 T
s panTro5.chr6             142741230 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140889491 1 - 173848474 C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406979 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699975 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139330361 1 - 172585720 T
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138497880 1 + 170955103 T
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204734 1 +    407600 T
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76645 1 +    463628 C
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654774 1 +  71996105 T
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77794 1 -    115496 T
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699686 1 -   1936607 T
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138658311 1 - 171630274 C
i calJac3.chr4             C 0 I 310
s saiBol1.JH378315            212098 1 +   1154217 C
i saiBol1.JH378315         C 0 C 0
s proCoq1.NW_012150019v1      140779 1 +   1371726 C
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15339363 1 -  18854210 C
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e cebCap1.NW_016107339v1    14032255 322 +  15232693 I
e aotNan1.NW_018508875v1      282993 342 +    446445 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            460104 0 -    935526 I

a score=13923.000000
s hg38.chr6_KI270758v1_alt     37900 1 +     76752 A
s panTro5.chr6             142741231 1 - 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140889492 1 - 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406980 1 +   2807050 A
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699976 1 - 122973662 A
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139330362 1 - 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138497881 1 + 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204735 1 +    407600 A
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76646 1 +    463628 A
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654775 1 +  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77795 1 -    115496 A
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699687 1 -   1936607 A
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138658622 1 - 171630274 A
i calJac3.chr4             I 310 C 0
s saiBol1.JH378315            212099 1 +   1154217 A
i saiBol1.JH378315         C 0 I 320
s cebCap1.NW_016107339v1    14032577 1 +  15232693 A
i cebCap1.NW_016107339v1   I 322 C 0
s aotNan1.NW_018508875v1      283335 1 +    446445 A
i aotNan1.NW_018508875v1   I 342 C 0
s proCoq1.NW_012150019v1      140780 1 +   1371726 A
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15339364 1 -  18854210 A
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            460104 0 -    935526 I

a score=1720334.000000
s hg38.chr6_KI270758v1_alt     37901 151 +     76752 CAACCAG----------ACATAGTTAAATGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTCATATCAATTTCAATGGCTAGGCTATCCTTTGGGGTATAGTTTTCCTTTCATCCTGCTAACCCATTAATTATCCTTT
s panTro5.chr6             142741232 151 - 175400573 CAACCAG----------ACATAGTTAAGTGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTCATATCAATTTCAATGGCTAGGCTATCCTTTGGGGTATAGTTTTCCTTTCATCCTGCTAACCCATTAATTATCCTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140889493 151 - 173848474 TAACCAG----------ACATAGTTAAATGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTCATATCAATTTCAATGGCTAGGCTATCCTTTGGGGTATAGTTTTCCTTTCATCCTGCTAATCCATTAATTATCCTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2406981 150 +   2807050 CAACCAG----------ACATAGTTAAATG-TTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTTATATCAATTTCAACGCCTAGGCTATCCTTTGGGGTATAGTTTTCCTTTCATCCTGCTAATCCATTAATTATCCTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45699977 151 - 122973662 CAACCAG----------ACATAGTTAAATGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTGATCTCAATTTCAATGGCTAGGCTAGCATTTGGGGTATAGTTTTCCTTTCATCCTGCTAATCCATTAATTATCCTTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139330363 151 - 172585720 CAACCAT----------AGTTAGTTAAATGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTTATATCAATTTAAATGGCTAGGCTATCCTTTGAGGTATAGTTCTCCTTTCATTCTGCTAATTCATTAATTATCCTTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138497882 151 + 170955103 CAACCAT----------AGTTAGTTAAATGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTTATATCAATTTAAATGGCTAGGCTATCCTTTGAGGTATAGTTCTCCTTTCATTCTGCTAATTCATTAATTATCCTTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204736 150 +    407600 CAACCAT----------AGTTAGTTAAATGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTTATAGCAATTTCAATGGCTAGGCTATCCTTTGGGGTAT-GTTCTCCTTTCATCCTGCTAATTCATTAATTATCCTTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76647 151 +    463628 CAATCAT----------AGTTAGTTAAATGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTTATATCAATTTCAATGGCTAGGCTATCCTTTGGGGTATAGTTCTCCTTTCATCCTGCTAATTCATTAATTATCCTTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654776 151 +  71996105 CAACCAT----------AGTTAGTTAAATATTTTATATGTGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTTATATCAATTTCAATGGCTAGGCTATCCTTTGGGGTATAGTTCTCCTTTCATCCTGCTAATTCATTAATTATCCTTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77796 151 -    115496 CAACCAT----------AGTTAGTTAAATGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTTATATCAATTTAAATGGCTAGGCTATCCTTTGAGGTATAGTTCTCCTTTCATTCTGCTAATTCATTAATTATCCTTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699688 151 -   1936607 CAACCAT----------AGTTAGTTAAATGTTTTAGATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTTATATCAATTTCAATGGCTAGGCTATCCTTTGGGGTATAGTTCTCCTTTCATCCTGCTAATTCATTAATTATCCTTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138658623 151 - 171630274 CAACCAA----------ACATGGTTAAATGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTCTTTTCATATTCCAGTTGATATCAATTTCAATGGGTAGGGTATCCTTTGAGGTATAGTTTTTCTTTCATTCTGCTAATCCATTAATTATTCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            212420 116 +   1154217 CAACCAG----------ACATAGTTAAATGTTTTATATATGGTCATAAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTTATATCAATTTCAATGGGTAGGGTATCCT-----------------------------------TTAATTATTCCTT
i saiBol1.JH378315         I 320 C 0
s cebCap1.NW_016107339v1    14032578 151 +  15232693 CAACCAG----------ACATAGTTAAATGTTTTACATATGGTCATGAAACTAAATTGTTCCCAATTATTTTCATATTCCAGTTTATATCAATTTCAGTGGGTAGGGTATCATTTAGGGTATAGTTTTCCTTTCATCCTGCTAATCCATTAATTATTCTTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      283336 151 +    446445 CAACCAG----------ACATAGTTAAATGTTTTATATATGGTCATGAAACTAAATTGTCCCCAATTATTTTCATATTCCAGTTTATATCAATTTCAATGGGTAGGGTATCCTTTGGGGTATAGTTTTCCTTTCATCCTGCTAATCCATTAATTATTCTTT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      140781 149 +   1371726 TAACC------------ATTTAGTTACATGTCTTATATATGATCATGAAGCTAAATAGTCAGCAATTATTTCCACATTCCAGTTTAGATCACTTTCAATGGTTAGGGTATCTTTTGGGATATAGTTTCCCTTTTTCCCTGCTAATTTATTAATTATTCTTT
i proCoq1.NW_012150019v1   C 0 I 424
s otoGar3.GL873550          15339365 161 -  18854210 TAACCAGAGTTTGTTAAACTCATTTGTTTGTCTTACAAATGATCATGAGGCTAAATAGCCACTAATTATTTTCATATTCCAGCTTATATCAACTTTAATGGCTAGGGTATCTTTGGGGGCATTATATTCCTTTCTCTCTGCTAATCTATTAATTATTCTTT
i otoGar3.GL873550         C 0 I 3
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            460104   0 -    935526 I

a score=194409.000000
s hg38.chr6_KI270758v1_alt     38052 19 +     76752 TCTACGTGTCCACAAAtgt
s panTro5.chr6             142741383 19 - 175400573 TCTACGTATCCACAAAtgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140889644 19 - 173848474 TCTACGTGTCCACAAAtgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2407131 19 +   2807050 TCTATGTGTCCAAAAAtgt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45700128 19 - 122973662 TCTATATGTCCACAAAtgt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139330514 19 - 172585720 TCTATGTGTCCACAAAtgt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138498033 19 + 170955103 TCTATGTGTCCACAAAtgt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204886 19 +    407600 TCTATGTGTCCACAAAtgt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76798 19 +    463628 TCTATGAGTCCACAAAtgt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654927 19 +  71996105 TCTATGTGTCCACAAAtgt
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77947 19 -    115496 TCTATGTTTCCACAAAtgt
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699839 19 -   1936607 CCTGTGTGTCCACAAAtgt
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138658774 19 - 171630274 TCTACGTATCCACAAAtgt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            212536 19 +   1154217 TCTATGTAACCACAAAGgt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14032729 19 +  15232693 TCTGTAAATCCACAAAtgt
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      283487 19 +    446445 TCTACGTATCCACAAAtgt
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15339529 19 -  18854210 TCCGTGTGCCCACAAATGT
i otoGar3.GL873550         I 3 I 556
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      140930 424 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e dasNov3.JH569424            460104  0 -    935526 I

a score=6666105.000000
s hg38.chr6_KI270758v1_alt     38071 686 +     76752 cagaggtgtttgagccggagcaactccatcttgaataggggctgggtacaatgaggctgagagctactgggctgcattcccaggaggttaaggcacttt-cagtcacaggatgagataggaggtctgcacaggatacaggtcatgaagaccttgctgataaaacaggttgcagttaagaaacgggccaaaacccaccaaaaccaacatggccacaagagtgacctctggtcatcctcactgctcattatatgctaattataaagtattagcatgctaaaagacactcccaccagcgccatgacagtttacagatgccatggcaacatccaaaattaccctatatggtctaaaaaggagagaag--cccttagtccaggaattgcccaccaccttcccggaaaactcatgagtaatccaccccttatttagcttgtaatcaagaaatGCTAAACCTACATGAAGTATGAACGATTCCTTACATTCCATTCCATGCACCACATCCTCCCTGAAGATTGTCTTGATTCCTTCATAGTTATTGAATTATTATAATATTAGTGCCTATGTTCTCTACTCTCAAAA-GTGCAAATGACATTAATAACTGAACTTATAATATTTTCTGCTTTGCTACC-TTAAGAATGAGTGCCTGGTATTGCGACGTGATTACAACGAATTTAAGACAATGAAGCAG----
s panTro5.chr6             142741402 686 - 175400573 cagaggtgtttgagccggagcaactccatcttgaataggggctgggtacaatgaggctgagagctactgggctgcattcccaggaggttaaggcatttttcagtcacaggatgagataggaggtctgcacaggatacaggtcatgaagaccttgctgataaaactggttgcagttaagaaacgggccaaaacccaccaaaaccaacatggccacaagagtgacctctggtcatcctcactgctcattatatgctaattataaagtattagcatgctaaaagacactcccaccagcgccatgacagtttacagatgccatggcaacatccaaaattaccctatatggtctaaaaaggagagaaa--cccttagtccaggaaatgcccaccaccttcccggaaaactcatgagtaatccaccccttatttagcttgtaatcaagaaatGCTAAACCTACATGGAGTAGGAACGATTC-TTACATTCCATTCCATGCACCACATCCTCCCTGAAGATTGTCTTGATTCCTTCATAGTTATTGAATTATTATAATATTAGTGCCTATGTTCTCTACTCTCAAAA-GTGCAAATGACATTAATAACTGAATTTATAATATTTTCTGCTTTGCTACC-TTAAGAGTGAGTGCCTGGTATTGCGACGTGATTACAACGAATTTAAGACAATGAAGCAG----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140889663 681 - 173848474 cagaggtgtttgagccggagcagctccatcttgaataggggctgggtacaatgaggctgagagctactgggctgcattcccaggaggttaaggcacttt-cagtcacaggatgagataggaagtctgcacaggatacaggtcatgaagaccttgctgataaaacgggttgcagttaag-aacgggccaaaacccaccaaaaccaatatggccacaagagtgacctctggttgtcctcactgctcattatacgctaattataatgtattagcatgctaaaggacactcccaccagcgccatgacagtttacagatgccatggcaacatccaaaattaccctataaggtctaaaaaggagagaaa--cccttagtccaggaaatgcccaccaccttcccggaaaactcatgagtaatccaccccttatttagcttgtaatcaagaaatGCTAAACCTACATGAAGTATGAACGATTCCTTACATTCCATCCCATGAACCACATCCTTCCTGAAGATTGTCTTGATTCCTTCATAGTTATTGAATTATTATAATATTAGTGCCTATGTTCTCTACTCTCAAAA-GTGCAAATGACATTAAGAACTGAATTTGTAGTATTTTCTACTTTGCTACC-TTAA----GAGTGCCTGGTATTGCGACGTGATCACAACGAATTTAAGACAATGAAGCAG----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2407150 686 +   2807050 cagaggtgtttgagccggagcaactccatcttgaataggggctgggtacaatgaggctgagagctactgggctgcattcccaggaggttaaggcacttt-cagtcacaggatgagataggaggtctgcacaggatacaggtcatgaagaccttgctgataaaacgggttgcagttaagaaacgggccaaaacccaccgaaaccaacatggccacaacagtgacctctggtcgtcctcactgctcattatatgctaattataatgtattagcatgctaaaaggcactcccaccagcgccatgacagtttacagatgccatggcaacatccaaaattaccctatgtggtctaaaaaggagagaaa--cccttagtccaggaattgcccaccaccttcccggaaaactcatgagtaatccaccccttatttagcttgtaatcaagaaatGCTAAACCTACATGAAGTATGAACGATTCCTTACATTCCATTCCATGCACCACATCCTCCCTGAAGATTGTCTTGATTCCTTCATAGTTATTGAATTATTATAATATTAGTGCCTATGTTCTCTACTCTCAAAA-GTGCAAATGACATTAATAACTGAATTTATAATATTTTCTGCTTTGCTACC-TTAAGAGTGAGTGCCTGGTATTGCGACGTGATTACAACAAATTTAAGACAATGAAGCAG----
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45700147 681 - 122973662 cagaggtgtttgagccagagcaactccatcttgaataagggctgggtgcaatgaggctgagagctactgggctgcattcccaggaggttaaggcatttt-cagtcacaggatgagataggaagtctgcacaggacagaggtcatgaagaccttgctgataaaacaggttgcagttaagaaacgggccaaaacccaccgaaaccagcatggccacaacagtgacctctggtcgtcctcactgctcattatacgctaattataatgtattagcatactaaaagacactcccaccagcgccatgacagtttacagatgtcatggcaacatccaaaattaccctatatggtctaaaagggggagaaa--cccttagttcaggaattgcccaccaccttcccggaaaactcatgagtaatccaccccttatttagcttgtaatcaagaaatGCTAAACCTACATGAAGTATGAACGATTCCTTACATTCCATCCCATGCACCACATCCTCCCTGTAGACTGTCTTGATTCCTTCAAAGTGATTGAATTATTATAATATTAGTGCCTATGTTCTCTACTCTCAAAA-GTGCAAATGACATTAATAACTGAATTTATAATATTTTCTGCTTTGCTACC-TTA-----GAGTGCCTGGTATTGCGAAGTGATCACAACGAATTTAAGACAATGAAGCAG----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139330533 683 - 172585720 cagaggtgtttgaaccagagcaactccatcttgaacaggggctgggtacaataaggctgagagctactgggctgcattcccaggaggttaagtcattct-cagtcacaggatgagacaggaggtctgcacaggatacaggtcatgaagaccttgctgataaaacaggttgcagttaagaaacgggccaaaacccaccgaaaccagcatggccacaagagtgacttctggtcgtcctcactgctcattatacgctaattataatgtgttagcgtgctaaaagacactcccacccacgccatgacagtttacagatgccatggcaacatccaaaattaccctatgtgatctaaaaaggggagaaa--cccttagtccagaaattgcccaccaccttccc-gaaaactcctgagtaacccaccccttattgagcttgtaatcaataaatGCTAAACCTACATGAAGTATGAACGATTCCTTACGTTCCATCCCTTGCACCACACCCTCCCTGAAGACTGTCTTGATTCCTTCATAGTTACTGAATTATT---ATATTAGTGCCTACGTTCTCTACTCTCAAAA-GTGCAAATGACATTAAGAATTGAATTTATAATATTTTCTGCTTTGCTACCTTTAA----GAGTGCCTGGTATTGCGACGCGATCACAACGAATTTAAGACATTGAAGCAGTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138498052 685 + 170955103 cagaggtgtttgaaccagagcaactccatcttgaacaggggctgggtacaaaaaggctgagagctactgggctgcattcccaggaggttaagtcattct-cagtcacaggatgagacaggaggtctgcacaggatacaggtcatgaagaccttgctgataaaacaggttgcagttaagaaacgggccaaaacccaccgaaaccagcatggccacaagagtgacttctggtcgtcctcactgctcattatacgctaattataatgtattagtgtgctaaaagacactcccacccgcgccatgacagtttacagatgccatggcaacatccaaaattaccctatgtggtctaaaaaggggagaaa--cccttagtccaggagttgcccaccaccttcct-gaaaactcgtgagtaacccaccccttatttagcttgtaatcaataaatGCTAAACCTACATGAAGTATGAACGATTCCTTACGTTCCATCCCTTGCACCACATCCTCCCTGAAGACTGTCTTGATTCCTTCCTAGTTACTGAATTATTATAATATTAGTGCCTACGTTCTCTACTCTCAAAA-GTGCAAATGACATTAAGAATTGAATTTATAATATTTTCTGCTTTGCTACC-TTAA----GAGTGCCTGGTATTACGACGTGATCACAACGAATTTAAGACAATGAAGCAGTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      204905 685 +    407600 cagaggtgtttgaaccagagcaactccatcttgaacaggggctgggtacaaaaaggctgagagctactgggctgcattcccaggaggttaagtcattct-cagtcacaggatgagacaggaggtctgcacaggatacaggtcatgaagaccttgctgataaaacaggttgcagttaagaaacggaccaaaacccactgaaaccagcatgaccacaagagtgacctctggtcgttctcactgttcattatacgctaattataatgtattagtgtgctaaaagacactcccacccgcgccatgacagtttacagatgccatggcaacatccaaaattaccctatgtggtctaaaaaggggagaaa--cccttagtccaggagttgcccaccaccttcct-gaaaactcgtgagtaacccaccccttatttagcttgtaatcaataaatGCTAAACCTACATGAAGTATGAACGATTCCTTACGTTCCATCCCTTGCACCACATCCTCCCTGAAGACTGTCTTGATTCCTTCATAGTTACTGAATTATTATAATATTAGTGCCTACGTTCTCTACTCTCAAAA-GTGCAAATGACATTAAGAATTGAATTTATAATATTTTCTGCTTTGCTACC-TTAA----GAGTGCCTGGTATTGCGACGCCATCACAACGAATTTAAGACAATGAAGCAGTCAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       76817 684 +    463628 cagaggtgtttgaaccagagcaactccatcttgaacaggggctaggtacaataaggctgagagctactgggctgcattcccaggaggttaagtcattct-cagacacaggatgagacaggaggtctgcacaggatacaggtcatgaagaccttgctgataaaacaggttgcagttaagaaatgggctaaaacccaccgaaaccagcatgaccacaagagtgacctctggttgtcctcactgctcattatacgctaattataatgtattagcgtgctaaaagacactcccacccgcgccatgacagtttacagatgccatagcaacattcaaaattaccctatgtggtctaaaaaggggagaaa--cccttagtccaggaattgcccaccaccttccc-caaaactcgtgagtaacccaccccttatttagcttgtaatcaa-aaaTGCTAAACCTACATGAAGTATGAACGATTCCTTACTTTCCATCCCTTGCACCACATCCTCCCTGAAGACTGTCTTGATTCCTTCATAGTTACTGAATTATTATAATATTAGTGCCTACGTTCTCTACTCTCAAAA-GTGCAAATGACATTAAGAATTGAATTTATAATATTTTCTGCTTTGCTACC-TTAA----GAGTGCCTGGTATTGCGACGTGATCACAACGAATTTAAGACAATGAAGCAGTCAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39654946 685 +  71996105 cagaggtgtttgaaccagagcaactccatcttgaacaggggctgggtacaataaggctgagagctactgggctgcgttcccaggaggttaagtcattct-cagtcacaggatgagacaggaggtctgcacaggatacaggtcatgaagaccttaatgataaaacaggttgcagttaagaaacgggccaaaacccaccgaaaccagcatgaccacaagagtgacctctggtcgtcctcactgctcattatacgctaattataatgtattagcgtgctaaaagacactcccacccgcgccatgacagtttacagatgccatggcaacatccaaaattaccctatgtggtctgaaaaggggagaaa--cccttagtccagaaattgcccaccaccttccc-gaaaactcctgagtaacccaccccttatttagcttgtaatcaacaaatGCTAAACCTACATGAAGTATGAACGATTCCTTACGTTTCATCCCTTGCACCACATCCTCCCCGAAGACTGTCTTGATTCCTTCATAGTTACTGAATTATTGTAATATTAGTGCCTACGTTCTCTACTCTCAAAA-GTGCAAATGACATTAAGAATTGAATTTATAATATTTTCTGCTTTGCTACC-TTAA----GAGTGCCTGGTATTGTGACGCGATCACAACGAATTTAAGACAATGAAGCAGTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       77966 685 -    115496 cagaggtgtttgaaccagagcaactccatcttgaacaggggctgggtacaataaggctgagagctactgggctgcattcccaggaggttaagtcattct-cagtcacaggatgagacaggaggtctgcacaggatacaggtcatgaagaccttgctgataaaacaggttgcagttaagaaacgggccaaaacccaccgaaaccagcatggccacaagagtgacttctggtcgtcctcactgctcattatacgctaattataatgtattagcgtgctaaaagacactcccacccgcgccatgacagtttacagatgccatggcaacatccaaaattaccctatgtggtctaaaaaggggagaaa--cccttagtccaggaattgcccaccaccttccc-caaaactcgtgagtaacccaccccttatttagcttgtaatcaataaatGCTAAACCTACATGAAGTATGAACGATTCCTTACGTTCCATCCCTTGCACCACATCCTCCCTGAAGACTGTCTTGATTCCTTCATAGTTACTGAATTATTATAATATTAGTGCCTACGTTCTCTACTCTCAAAA-GTGCAAATGACATTAAGAATTGAATTTATAATATTTTCTGCTTTGCTACC-TTAA----GAGTGCCTGGTATTACGACGTGATCACAACGAATTTAAGACAATGAAGCAGTCAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      699858 685 -   1936607 cagaggtgtttgaaccagagcaactccatcttgaacagtggctgggtacaataaggctgagagctactgggctgcattcccaagaggttaagttattct-cagtcacagggtgagacaggaggtctgcacaggatacaggtcatgaagaccttgctgataaaacaggttgcagttaagaaacgggccaaaacccaccgaaaccagcatgaccacaagagtgacctctggtcgtcctcactgcccattataagctaattatagtgtattagcatgctaaaagacactcccacccgcgccatgacagtttacagatgccatggcaacatccaaaattaccctatgtggtctaaaaaggggagaaa--cccttagtccaggaattgcccaccaccttccc-gaaaactcgtgagtaacccaccccttatttagcttgtaatcaataaatGCTAAACCTACATGAAGTATGAACGATTCCTTACATTCCACCCCTTGCACCACATCCTCCCTGAAGACTGTCTTGATTCCTTCATAGTTACTGAATTATTATAATATTAGTGCCTACGTTCTCTACTCTCAAAA-GTGCAAATGACATTAAGAATTGAATTTGTAATATTTTCTGCTTTGCTACC-TTAA----GAGTGCCTGGTATTGCGACGTGATCACAACGAATTTAAGACAGTGAAGCAGTCAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138658793 670 - 171630274 cagaggtgtttgaatgggagcaactccatcttgaataggggctgggtacaatgag-----gacctactgggctgcattcccaggaggttaaggcattct-cagtcacaggatgagacaggaggtctgcggaaggtacaggtcaggaaggtcttgctgataaaacaggttgcagttaagaagccggccaaaacccaccaacaccaagatggcc-caagagtgacctctggttgtcctcactgctcattataagccagttaaaatgtattagcatgctaaaagacactcccaccagcaccatgacagtttacagatgccatggcaacgtccgaaattaccctatacggtctaaaaaggggaggaa--cccttagtccaggaattgcccaccaccttcccagaaaacgcatcagtaatccatcccatgtttagcctgtaatcacgaaatGCTAAACCTAAATGAAGTATGAACGATTCCTTACGTTCTGTCCCACACACCACAACCTCCGTAAAGATTGTCTTGCTTCCTTCATAGTTATTGAATTATT---ATGTTAGCGCCTATGTTCTCTACTCTTAAAA-GTGTAAATGACATTAAGAACTGAAT-TA-AATATTTTCTGCTTTGCTTCC-TTAA----GAGTGCCTGATACTGAGATGTGATCACAGCGAATTT-AGACAATTAAGCAG----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            212555 679 +   1154217 cagaggtgtttaaacgggagcaactccatcttgaataggggctggtcacaatgag-----agcctactgggctgcattcccaggaggttaaggcattct-cagtcacaggatgagacaggaggtctgcacaaggtataggtcaggaaggtcttgctgataaaacaggttgcagttaagaagccggccaaaacccaccaacaccaagatggccacaagagtgacctctggttgtcctcactgctcattaaaagccaattaaaatgtattagcatgctaaaagacactcccaccagcgccatgaaagtttacagatgccatggcaacatccaaaatcaccctatatgatctaaaaaggggagaaattcccttagtccaggaattacccgccaccttcccagaaaactcatgagtaatccatcccatgtttagcctgtaaccaagaaatGCTAAACCTAAATGAAGTATGAACGATTCCTTACATGCTATCCCACGCACCACATCCTCCGGAAAGATTATCTCGATTCCTTCCTAGTTATTGAATTATTATAATATTAGTGCCTATGTTCTCTGCTCTTAAAG-GTGTAAATGACATTAAGAACTGAATGTATAATATTTTCTACTTTGCTTCC-TTAA----GAGTGCCCGGTATTGAGACGTGATCACAGCGAATTTAAGACCATGAAGCAG----
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14032748 678 +  15232693 cagaggcgtttgaacgggagcaactccagcttgaataggggctgggtacaatgag-----gacctactgggctgcattcccaggaggttgaggcattct-cagtcacaggatgagacaggaggtctgcacaaggtacacgtcaggaaggtcttgctgataaaacaggttgcagttaagaagtcggccaaaacccaccaacaccaagatggccacaaaagtgacctctggttgtcctcactgctccttataagcaagttaaaatgtattagcatgctaaaagacactcccaccagcgccatgacagtttacagatgccacggcaacgtccgaaattaccctatatgatctaaaacggggaggaa--cccttagtccaggaattgcccaccaccttcccagaaaactcatgagtaatccatcccatgtttagcccgtaatcaagaaatGCTAAACCTAAATGAAGTGTGAACGATTCTTTACATTCTATCCCACGCACCACATCCTCCGTAAAGATTGTCTTGATTCCTTCATAGTTATTGAATTATTATGATATTAGTGCCTATGTTCTCTACTCTTAAAGAGTGTAAATGACATTAAGAACTGAATTTATAATATTTTCTACTTTGCCTCC-TTAA----GAGTGCCTGGTATTGAGCCGAGATCACAGCGAATTTCAGACAATGAAGCAG----
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      283506 677 +    446445 cagaggtatttgaacaggagcaactccatcttgaataggggctgggtacaatgag-----gacctactgggctgcattcccaggaggttaaggcattct-cagtcacaagatgagacaggaggtctgcacaaggtacaggtcaggaaggtcttgctgataaaacaggttgcagttaagaagccagccaaaacccaccaacaccaagatggccacaagagtgacctctggttgtcctcactgctcattataagccagttaaaatgtattagcatgctaaaagacactcccaccagcgccatgacagtttacagatgccatggcaacgtccaaaattaccctatatgatctgaaaaggggaggaa--cccttagtctaggaattgcccaccaccttcccagaaaactcatgagtaatccatcccatgtttagcctgtaatcaagaaatGCTAAACCTAAATGAAGTATGAACGATTCCTTACATTCTATCCCACGCACCACATCCTCCGTAAAGATTGTCTTGATTCCTTCATAGTTATTGAATTATTATAATATTAGTGCCTATGTTCTCTACTCTTAAAA-GTGTAAATGACATCAAGAACTGAATTTATAATATTTTCTACTTTGCTTCC-TTAA----CAGTGCCTGGTATTGGGACGTGATCACAGCTAATTTAAGACAATGAAGCAG----
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      140930 424 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            460104   0 -    935526 I

a score=68328.000000
s hg38.chr6_KI270758v1_alt     38757 6 +     76752 TCctct
s panTro5.chr6             142742088 6 - 175400573 TCctct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140890344 6 - 173848474 TCctct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2407836 6 +   2807050 TCGtct
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45700828 6 - 122973662 TCCTCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331216 6 - 172585720 tcctct
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138498737 6 + 170955103 TCctct
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      205590 6 +    407600 TCctct
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       77501 6 +    463628 TCctct
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39655631 6 +  71996105 TCctct
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       78651 6 -    115496 TCctct
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      700543 6 -   1936607 TCCTCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138659463 6 - 171630274 TCctct
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            213234 6 +   1154217 TCCCCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14033426 6 +  15232693 TCctct
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284183 6 +    446445 TCctct
i aotNan1.NW_018508875v1   C 0 C 0
s dasNov3.JH569424            475911 6 +    935526 ttctct
i dasNov3.JH569424         I 1485 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      140930 424 +   1371726 I
e canFam3.chr12             70378021 7050 -  72498081 I
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=587427.000000
s hg38.chr6_KI270758v1_alt     38763 81 +     76752 ctccctatctccctcatatcctctctgg------ctctct------------ct---ctctctctgtccttctct----------cctcctctctttcCC-CCGCATTCTCCC----------
s panTro5.chr6             142742094 81 - 175400573 ctccctatctccctcatatcctctctgg------ctctct------------ct---ctctctctgtccttctct----------cctcctctctttcCC-CCGCATTCTCCC----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140890350 79 - 173848474 ctccctatctccctcatatcctctctgg--------ctct------------ct---ctctctctgtccttctct----------cctcctctctttcCC-CCGCATTCTCCC----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2407842 87 +   2807050 ctccctatctccctcatattctctctggctctctctctct------------ct---ctctctctgtccttctct----------cctcctctctttcCC-CCGCATTCTCCC----------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45700834 77 - 122973662 CTCCCCATCTCCCTCATTTCCTCTCTAG----------CT------------CT---CTCTCTCTGTCCTTCTCT----------CCTCCTCCCTCTCCC-CTGCATTCTCCC----------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331222 78 - 172585720 ctccccatctccctcatttcctctctag--------ctct------------ct---ctctctctcctcctc-ct----------cctcctccctctccc-ctgcattctccC----------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138498743 78 + 170955103 ctccccatctccctcatttcctctctag--------ctct------------ct---ctctctgtcctcctc-ct----------cctcctccctctccc-ctgcattctccc----------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      205596 79 +    407600 ctccccatctccctcatttcctctctag--------ctct------------ct---ctctgtctctccttctct----------cctcctccctctcCC-CTGCATTCTCCC----------
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       77507 76 +    463628 ctccccatctccctcatttcctctctag--------ctct------------ct---ctctgtctcttct---ct----------cctcctccctctcCC-CTGCATTCTCCC----------
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39655637 81 +  71996105 ctccccatctccctcatttcctctctag--------ctct------------ct---ctctgtctctctctctctcc--------cctcctccctctcCC-CTGCATTCTCCC----------
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       78657 79 -    115496 ctccccatctccctcatttcctctctag--------ctct------------ct---ctctgtctctccttctct----------cctcctccctctcCC-CTGCATTCTCCC----------
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      700549 79 -   1936607 CTCCCCATCTCCCTCATTTCCTCTCTAG--------CTCG------------CT---CTCTGTCTCTCCTTCTCT----------CCTCCTCCCTCTCCC-CTGCATTCTCCC----------
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138659469 72 - 171630274 ctccc-atctccctcatttcctctttgg--------ctct------------ct---ctgtccttctccc----------------ccgctccctctctc-ctgcactctccc----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            213240 81 +   1154217 CTCCC-ATCCCCCTCATTTCCTCTGCGG--------ccct------------ctgtcctctccccctccctctgt-----------cctctccccctccctctgtcctctccc----------
i saiBol1.JH378315         C 0 M 960
s cebCap1.NW_016107339v1    14033432 71 +  15232693 ctccc-atctccctcctttcctctctgg--------ctct------------ct---ccatcctcctctc----------------cccct-cctctctc-ctgcactctcCC----------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284189 90 +    446445 ctccc-atctccctcatttcctctttgg--------ctcttcctctctgtccct---ctctcccactccctctct----------ccccctccctctctc-CTGCATTCTCCC----------
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70385071 90 -  72498081 CTGTCTAATTTCTCCAACTATTCTTGGA-------TTTCC------------CT---CCATTGCTAATCTTTGCTTACAGAGATGTTTCTTCATGATTCC-CATCCTCATCTC----------
i canFam3.chr12            I 7050 C 0
s dasNov3.JH569424            475917 89 +    935526 ttcctttcatcccttattcgatctctct--------ttct------------tt---ctctccctgccttcttct----------ctccctccctctctt-tctgtctctccccccctctcca
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      140930 424 +   1371726 I
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=173549.000000
s hg38.chr6_KI270758v1_alt     38844 21 +     76752 AGGGTGGTTCAGTGGCAGAAT
s panTro5.chr6             142742175 21 - 175400573 AGGGTGGTTCAGTGGCAGAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140890429 21 - 173848474 AGGGTGATTCAGTGGCAGAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2407929 21 +   2807050 AGGGTGGTTCAGTGGCAGAAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45700911 21 - 122973662 AGGGTGGTTCAGCGGCAGAAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331300 21 - 172585720 AGGGTGGTTCAGGGGCAGAAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138498821 21 + 170955103 AGGGTGGTTCAGGGGCAGAAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      205675 21 +    407600 AGGGTGGTTCAGGGGCAGAAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       77583 21 +    463628 AGGGTGGTTCAGGGGCAGAAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39655718 21 +  71996105 AGGGTGGTTCAGGGGCAGAAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       78736 21 -    115496 AGGGTGGTTCAGGGGCAGAAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      700628 21 -   1936607 AGGGTGATTCAGGGGCAGAAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138659541 21 - 171630274 AGCGTGGTTCAGTGGCAGAAT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14033503 21 +  15232693 AACGTGGTTCAGGGGCAGAAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284279 21 +    446445 AGCGTGGTTCAGTGGCAGAAT
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70385161 20 -  72498081 CAAGTGGTTCAGTCACCTAT-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            476006 15 +    935526 -----aGTTTAGTTTCTAAT-
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34348491 900 +  94987271 I
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      140930 424 +   1371726 I
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=135487.000000
s hg38.chr6_KI270758v1_alt     38865 36 +     76752 TCTGCTGGGACCTTTAAGAGAGAGAAGCATATTCAG
s panTro5.chr6             142742196 36 - 175400573 TCTGCTGGGACCTTTAAGAGAGAGAAGCATATTcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140890450 36 - 173848474 TCTGCTGGGACCTTTAAGAGAGAGAAGCATATTcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2407950 34 +   2807050 TCTGCTGGGACCTTTA--AGAGAGAAGCATATTcag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45700932 36 - 122973662 TCTGCGGGGACCTTTAAGAGCGAGAAGCATATTcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331321 32 - 172585720 TCTGTTGGGGCCTTTGAGAGAG----GCATATTCAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138498842 36 + 170955103 TCTGTTGGGGCCTTTAAGAGAGAGACGCATATTCAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      205696 13 +    407600 TCTGTTGGGGCCT-----------------------
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       77604 36 +    463628 TCTGTTGGGGCCTTTAAGAGAGAGACGCATATTCAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39655739 36 +  71996105 TCTGTTGGGGCCTTTAAGAGAGAGACGCATATTCAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       78757 36 -    115496 TCTGTTGGGGCCTTTAAGAGAGAGACGCATATTCAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      700649 36 -   1936607 TCTGTTGAGGTCTTTAAGAGAGAGACGCATATTCAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138659562  4 - 171630274 TC--------------------------------AG
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14033524  4 +  15232693 TC--------------------------------AG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284300  4 +    446445 TC--------------------------------AG
i aotNan1.NW_018508875v1   C 0 C 0
s mm10.chr17                34349391 35 +  94987271 TCCTCTGGGGTCCTTAGGAGAGTTG-ACATAGTTGG
i mm10.chr17               I 900 C 0
s canFam3.chr12             70385181 36 -  72498081 TCTGCTAAGGTCCTGAGGAGACCGAAGCATACTGGA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            476021 36 +    935526 TCTTCTGGGACCCAGAGGAAACTTATGCATATTAGG
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4442607 35761 + 123392446 I
e proCoq1.NW_012150019v1      140930 424 +   1371726 I
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=379242.000000
s hg38.chr6_KI270758v1_alt     38901 40 +     76752 CAGCAGCAGCAG---------------------TTTTCCTATTCCTGCCCCCA-TCCGCGGC-
s panTro5.chr6             142742232 43 - 175400573 cagcagcagcag------------------cagTTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140890486 61 - 173848474 cagcagcagcagtagcatcatcagcagcagcagTTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2407984 61 +   2807050 cagcagcagcagtagcagcagcagcagcagcagTTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45700968 61 - 122973662 cagcagcagcggcagcagcagcagcaacagcagTTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331353 43 - 172585720 CAGCAGCAGCGG------------------CAGTTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138498878 43 + 170955103 CAGCAGCAGCGG------------------CAGTTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      205709 28 +    407600 ---------------------------------TTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       77640 43 +    463628 CAGCAGCAGCGG------------------CAGTTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39655775 43 +  71996105 CAGCAGCAGCGG------------------CCGTTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       78793 43 -    115496 CAGCAGCAGCGG------------------CAGTTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      700685 43 -   1936607 CAGCAGCAGCGG------------------CAGTTTTCCTATTCCTGCCCCCA-TCCGCGGC-
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138659566 40 - 171630274 CAGCAGCAGCA---------------------GTTTTCCTCTTCCTGCCTCCA-ACCGCAGC-
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14033528 43 +  15232693 CAGCAGCAGCAG------------------CGGTTTTCCTGATCCTGCCTCCA-TCCGCAGC-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284304 43 +    446445 CAGCAGCGGCAG------------------CAGTTTTCCTAATCCTGCCTCCA-TCCGCAGC-
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      141354 41 +   1371726 ---CAGCGGCAG------------------CAGTTTTCCCATTCCTGCCCCCATTCTGCGGG-
i proCoq1.NW_012150019v1   I 424 I 1
s mm10.chr17                34349426 42 +  94987271 TGACAGCAGCTA-------------------ATTTTTTTTTCTTCTTCCCCCA-TACCCAGG-
i mm10.chr17               C 0 I 1
s canFam3.chr12             70385217 33 -  72498081 ------CCGCAG------------------TAATTTTCCTATACTTGCC-CCA-TTCTC----
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            476057 36 +    935526 ---------CAG------------------CAGCTTTCCTATTCCTGCTACCACTCTGCGAGC
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4442607 35761 + 123392446 I
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=473869.000000
s hg38.chr6_KI270758v1_alt     38941 39 +     76752 TTTGAACTGAGTTTACCACGAAATACAAAAACA---CAATTT
s panTro5.chr6             142742275 39 - 175400573 TTTGAACTGAGTTTACCACGAAATACAAAAACA---CAATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140890547 39 - 173848474 TTTGAACTGAGTTTACCACGAAATACAAAAACA---CAATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408045 39 +   2807050 TTTGAACTGAGTTTACCACGAAATACAAAAACA---CAATTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701029 39 - 122973662 TTTGAACTGAGTTTACCACGAAATATAAAAACA---CAATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331396 39 - 172585720 TTTGAACTGCGTTTACCACGAAATATAAAAACA---CAATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138498921 39 + 170955103 TTTGAACTGCGTTTACCACGAAATATAAAAACA---CAATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      205737 39 +    407600 TTTGAACTGCGTTTACTACGAAATATAAAAACA---CAATTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       77683 39 +    463628 TTTGAACTGCGTTTACCACGAAATATAAAAACA---CAATTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39655818 39 +  71996105 TTTGAACTGCGTTTACCACGAAATATAAAAACA---CAATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       78836 39 -    115496 TTTGAACTGCGTTTACCACGAAATATAAACACA---CAATTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      700728 39 -   1936607 TTTGAACTGCGTTTACCACGAAATATAATAACA---CAATTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138659606 39 - 171630274 TTTGATCTGAGTTTACCACGAAATATAAAAACA---CACTTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14033571 39 +  15232693 TTTGATCTGAGTTTACCACGAAATATAAAAACA---CAATTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284347 39 +    446445 TTTGATCTGAGCTTACCACGAAATATAAAAACA---CAATTT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4478368 39 + 123392446 TTTGAACTGAGTTCACCACGCAATGTAAAAACA---CAATTT
i micMur3.chr6             I 35761 I 928
s proCoq1.NW_012150019v1      141396 39 +   1371726 TTTGAACTGAGTTTACCCCTAAATATAAAAACA---CAGTTT
i proCoq1.NW_012150019v1   I 1 C 0
s mm10.chr17                34349469 37 +  94987271 GCTGAATTGAGTATGCT-----ATATAAAAAAAAGTTAATTT
i mm10.chr17               I 1 C 0
s canFam3.chr12             70385250  8 -  72498081 -------------------------------CA---CAATTT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            476093 39 +    935526 TTTGACCTTAGATCACCACGACATCTAAAAGCA---CAACCT
i dasNov3.JH569424         C 0 C 0
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=348476.000000
s hg38.chr6_KI270758v1_alt     38980 34 +     76752 TAGAAAGAAAGA--TATTGGCAGTTAAGATTTGGGA
s panTro5.chr6             142742314 34 - 175400573 TAGAAAGAAAGA--TATTGGCGGTTAAGATTTGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140890586 34 - 173848474 TAGAAAGAAAGA--TATTGGCAGTTAAGATTTGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408084 34 +   2807050 TAGAAAGAAAGA--TATTGGCGGTTAAGATTTGGGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701068 34 - 122973662 TAGAAAGAAAGA--GATTGGCAGTTAAGATTTGGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331435 34 - 172585720 TAGAAAGAAAGA--GATCGACAGTTAAGATTTGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138498960 34 + 170955103 TAGAAAGAAAGA--GATCGACAGTTAAGATTTGAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      205776 34 +    407600 TAGAGAGAAAGA--GATCGACAGTTAAGATTTGAGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       77722 34 +    463628 TAGAAAGAAAGA--GATCGACAGTTAAGATTTGAGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39655857 34 +  71996105 TAGAAAGAAAGA--GATCGACAGTTAAGATTTGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       78875 34 -    115496 TAGAAAGAAAGA--GATCGACAGTTAAGATTTGAGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      700767 34 -   1936607 TAGAAAGAAAGA--GATCGACAGTTAAGATTTGAGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138659645 34 - 171630274 TAGAAAAAAAGA--AGTTGGCACTTAAGATTTCGAA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14033610 34 +  15232693 TAGAAAAAAAGA--AGTTGGCAGTTAAGATTTCGAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284386 34 +    446445 TAGAAAAAAAGA--AGTTGACAGCTAAGATTTCGAA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      141435 34 +   1371726 AAGAAAGGAAGA--GATTGGAAGTTAAGGTTGGGGA
i proCoq1.NW_012150019v1   C 0 I 2212
s mm10.chr17                34349506 31 +  94987271 --GATTGAATGATGGATTGA---GCAATATTAGTGA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70385258 34 -  72498081 ATGAAAAGAAGA--GGTTGAAAGTTAAAATCTGGGA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            476132 34 +    935526 CCGAAAGGAAGA--GATTGGAAGTTAAGACTTGGTG
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4478407 928 + 123392446 I
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=2208583.000000
s hg38.chr6_KI270758v1_alt     39014 260 +     76752 AGTTTCTAA-ATGGGACTC-TCAGTCCTTCCC--------GC-CACTCTGAAATCGCGGTGCAGTAGTAAAATCTTGGAGGCGGTTCTTGAACAAAC-CTGTCATCTACTGGCCATGTG-TGGAACTGCAACAGCCCGGTGGGGAATGCACTTCGCAGAGATGGAGAT--CCTCTCAGAGGCCCCAAGAGGACCAAGTAAAAGAACCCAGGATGAATGGCAGGCTGGATGGGTGCAAATGCAGGAGGCTTAGTA--TATCGGTATGATTTTCTTT-GC
s panTro5.chr6             142742348 260 - 175400573 AGTTTCTAA-ATGGGACTC-TCAGTCCTTCCC--------GC-CACTCTAAAATCGCGGTGCAGTCGTAAAATCTTGGAGGCGGTTCTTGAACAAAC-CTGTCATCTACTGGCCATGTG-TGGAACTGCAACAGCCCGGTGGGGAATGCACTTCGCAGAGATGGAGGG--GCTCTCAGAGGCCCCAAGAGGACCAAGTAAAAGAACCCAGGATGAATGGCAGGCTGGATGGGTGCAAATGCAGGAGGCTTAGTA--AATCGGTGTGCTTTTCTTT-GC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140890620 260 - 173848474 AGTTTCTAA-ATAGGACTC-TCAGTCCCTCCC--------GC-CACTCTGAAATCGCGGTGCAGTCGTAAAATCTTGGAGGCGGTTCTTGAACAAAC-CTGTCATCTACTGGCCATGTG-TGGAACTGCAACAGCCCGGTGGGGAATGCACTTCGCAGAGATGGAGGG--GCTCTCAGAGGCCCCAAGAGGACCAAGTAAAAGAACCCAGGATGAATGGTAGGCTGGATGGGTGCAAATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTTCTTT-GC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408118 260 +   2807050 AGTTTCTAA-ATGGGACTC-TCAGTCCTTCCC--------GC-CACTCTGAAATCGCGGTGCAGTCGTAAAATCTTGGAGGCGGTTCTTGAACAAAC-CTGTCATCTACTGGCCATGTG-TGGAACTGCAACAGCCCGGTGGGGAATGCACTTCGCAGAGATGGAGAT--CCTCTCAGAGGCCCCAAGAGGACCAAGTAAAAGAACCCAGGATGAATGGCAGGCTGGATGGGTGCAAATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTTCTTT-GC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701102 261 - 122973662 CGTTTCTAA-ATGGGACTC-TCAGTCCTTCCC--------GT-CACTCTGAAATCGCGGTGCCATCGTAAAATCTTGGAGGCGGCTCTTGAACAAAC-CTGTCATCTACTGGCCATGTG-AGGAACTGCAACAGCCCGTTGGAGAATGTACTTCGCAGGGGTGGAGAT--CCTGTCAGAGGCCCCAAGAGGACCAAGTAAAAGAACCCAGGATGAATGGCAGGCCGGATGGGTGCAAACGCAGGAGGCTTAGTA--GATCGGTGTGCTTTTCTTTAGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331469 259 - 172585720 CGTTTCTGA-ATGGGACTC-TCAGTCCTTCCC--------GC-CACTCTGAAATCGCTGTGCCGTGGTAAAATCTTGGAGGCGGTTCTTGAACAAAC-CTGCCGTCTACTGGCCATGTG-AGGAACTGCAACAGCCCAATGG-GAATGCACTTCGCAGAGATGGAGAT--TCTGTCAGAGCCACCAAGAGGACCAAGTAAAAGAACCCAGGATGAATGGCAGGTT-GATGGCTGCAAATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTTCTTTAGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138498994 259 + 170955103 CGTTTCTGA-ATGGGACTT-TCAGTCCTTCCC--------GC-CACTCTGAAATCGCTGTGCCGTGGTAAAATCTTGGAGGCGGTTCTTGAACAAAC-CTGCCGTCTACTGGCCATGTG-AGGAACTGCAACAGCCCAATGG-GAATGCACTTCGCAGAGATGGAGAT--CCTGTCAGAGGCACCAAGAGGACCAAGTAAAAGAACCCAGGATGAATGGCAGGTT-GATGGCTGCAAATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTTCTTTAGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      205810 258 +    407600 AGTTTCTGA-ATGGGACTC-TCAGTCCTTCCC--------GC-CACTCTGAAATCGC-GTGCCGTGGTAAAATCTTGGAGGCGGTTCTTGAACAAAC-CTTCCATCTACTGGCCATGTG-AGGAACTGCAACAGCCCAATGG-GAATACACTTCGCAGAGATGGAGAT--CCTGTCAGAGGCACCAAGAGGACCAAGTAAAAGAACCCAGGATGAATGGCAGGTT-GATGGCTGCAAATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTTCTTTAGC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       77756 259 +    463628 CGTTTCTGA-ATGGGACTC-TCAGTCCTTCCC--------GC-CACTCTGAAATCACTGTGCCGTGGTAAAATCTTGGAGGCGGTTCTTGAACAAAC-CTGTCATCTACTGGCCATGTG-AGGAACTGCAACAGCCCAATGG-GAATGCACTTCGCAGAGATGGAGAT--CCTGTCAGAGGCACCAAGAAGACCAAGTAAAAGAAACCAGGATGAATGGCAGGTT-GATGGCTGCAAATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTTCTTTAGC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39655891 259 +  71996105 CGTTTCTGA-ATGGGACTC-TCAGTCCTTCCC--------GC-CACTCTGAAATCGCTGTGCCGTGGTAAAATCTTGGAGGCGGTTCTTGAACAAAC-CTGCCGTCTACTGGCCGTATG-AGGAACTGCAACAGCCCAATGG-GAATGCACTTCGCAGAGATGGAGAT--CCTGTCAGAGGCACCAAGAGGACCAAGTAAAAGAACCCAGGATGAATGGCAGGTT-GATGGCTGCAGATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTTCTTTAGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       78909 259 -    115496 CGTTTCTGA-ATGGGACTT-TCAGTCCTTCCC--------GC-CACTCTGAAATCGCTGTGCCGTGGTAAAATCTTGGAGGCGGTTCTTGAACAAAC-CTGCCGTCTACTGGCCGTATG-AGGAACTGCAACAGCCCAATGG-GAATGCACTTCGCAGAGATGGAGAT--CCTGTCAGAGGCACCAAGAGGACCAAGTAAAAGACCCCAGGATGAATGGCAGGTT-GATGGCTGCAAATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTTCTTTAGC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      700801 257 -   1936607 CGTTTCTGA-ATGGGAC---TCAGTCCTTCCC--------GC-CACTCTGAAATCACTGTGCCCCGGTAAAATCTTGGAGGCGGTTCTTGAAAAAAC-CTGCCGTCTACTGGCCATGTG-AGGAACTGCAACAGCCCAATGG-GAATGCACTTCGCAGAGATGGCGAT--CCTGTCAGAGGCACCAAGAGGACCAAGTAAAAGAACCCAGGATGAATGGCAGGTT-GATGGCTGCGAATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTTCTTTAGC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138659679 264 - 171630274 CTTTTCTAAAATGGGACTT-TCAGTCCTCTCC--------GC-CACTCTGAAATAGCGGTGCAGTCGTGAAATCTCGGAGGTGATTCTTGAACAATC-CTGCCATCTACTGGTCATGTG-AGGAACTGGACCAGCCTGGTGGGGCATGCGCTTCTCAGAGATGGAGATCCCCTGTCAGAGGCACCAAGAGGGCCAAGTAAAAGAACCCAGGCAGGATGGCAGGCTGGATGGGTGCAAATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTGTTTTAGC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14033644 262 +  15232693 CGTTTCTAAAATGGGACTT-GCAGTCCTTCCC--------GC-CACTCTGAAAT--CTGTGCAGTCCTGAAATCTTGGAGGTGGTTCTTGAACAAAC-CTGCCATCTACTGGTCACGTG-AGGAACTGGCCCCGCCCGGTGGGGGATGCGCTTCTCAGAGATGGAGATCCCCTGCCAGAGGCACCAAGAGGGCCAAGCCAAAGAACCCAGGTAGGATGGCAGGCTGGACGGGTGCAAATGCAGGAGCCTTAGCA--GATCGGTGTGCTTTGTTTTAGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284420 262 +    446445 CGTTTCTAAGATGGGACTT-TCAGTCCTTCTC--------GC-CACTCTGAAATCGCTGTGCAGTCGTGAAATCTTGGAGGTGGTTCTTGAACAAAC-CTGCCATCTACTGGTCACGTG-GGGAACTGGACGAGCCCGGTGGGGGATGCGCTTCTC--AGATGGAGAATCCCTGTCGGAGGCACCAAGAGGGCCAAGTAAAAGAACCCAGGTAGCATGGCAGGCTGGATGGGTGCAAATGCAGGAGGCTTAGTA--GATCGGTGTGCTTTGTTTTAGC
i aotNan1.NW_018508875v1   C 0 C 0
s mm10.chr17                34349537 230 +  94987271 GGCTTTGGA-GAGCAGCTCTTCAGACCTTATCCAAATTGTGC-CACCTTGAAAC-----------ACTAGCATCTTG--------TCTTG-TCAATT-CCGCCATCTACTGGTCATTCG-TGGAACTTCACCA------TTG-GGTTGCATTTCGCAGAGATGGA-----GCCACAAGGGG----AAGGGACCCAATAGGTGGGACCCAATA-----GGTGGGTTTCAAGGATACAAAGGCTG--GGACTAGTAGTGCCCAGTAAGCTTTATTTTTA-
i mm10.chr17               C 0 C 0
s canFam3.chr12             70385292 223 -  72498081 CGTTTTAGG-ATACAACTC-------------------------AGTCTGAAGGCATGGTGCCTACTTAAAACTCAG-----------TGGACAAGC-CTGTCATCTACTGGCCACATG-AGGAACTACAGTAACCCTCTT--GGATGTGGTGTAGAGAGTGGAAAAT--GAGTATAGAAGT-TTGGCAGGGC-------AAGAACCTAGAA-GTTTGGCAGGGCAAGCAGGTGCAAATGCAAGGGGTTCGGTA--GGATGATGTGCTTCTCTTAAC-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            476166 244 +    935526 CGTTTCACC-AGAGGCCTT-GGACACCTTGCC--------CCGGGGTCTGAAGTCCCTGCACCTCTTTCTACGCGGAGCGCATGTTCTTGAAGAAGCACTGCCATCTGCTGGTCATGTGTGGGAACTGCAATGACTCTATAGGGAACGGATTTCACGCAGACGCGGAG---------------CAAGCAGCAGTAAGTAAAAGAACCAAGGAAGTACAACAAGAT-AAAGGACGCAAATGCAGGAGGCTTAGTA--AATTGATTCTCTTAGT------
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4478407 928 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=613666.000000
s hg38.chr6_KI270758v1_alt     39274 53 +     76752 ------CTTCTTTCTCCCAATATTTGGAAGGGTCCCCTATTTCCAGTGTGAGACATGCC
s panTro5.chr6             142742608 53 - 175400573 ------CTTCTTTCTCCCAATATTTGGAAGGGTACCCTATTTCCAGTGTGAGACATGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140890880 53 - 173848474 ------CTTCTTTCTCCCAATATTTGGAAGGGTACCCTATTTCCAGTGTGAGACATGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408378 53 +   2807050 ------CTTCTTTCTCCCAATATTTGGAAGGGTACCCTATTTCCAGTGTGAGACATGCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701363 53 - 122973662 ------CTTCTTTCTCCCAATATTTGGAAGGGTCCCCTATTTCCAGTGTGAGACATGCC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331728 53 - 172585720 ------CTTCTTTCTCCCAATATTTGGAAGGGTCCCCTATTTCCAGTGTGAGACATGCC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138499253 53 + 170955103 ------CTTCTTTCTCCCAATATTTGGAAGGGTCCCCTATTTCCAGTGTGAGACATGCC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206068 53 +    407600 ------CTTCTTTCTCCCAATATTTGGAAGGGTCCCCTATTTCCAGTGTGAGACATGCC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78015 53 +    463628 ------CTTCTTTCTCCCAATATTTGGAAGGGTCCCCTATTTCCAGTGTGAGACATGCC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656150 53 +  71996105 ------CTTCTTTCTCCCAATATTTGGAAGAGTCCCCTATTTCCAGTGTGAGACATGCC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       79168 53 -    115496 ------CTTCTTTCTCCCAATATTTGGAAGGGTCCCCTATTTCCAGTGTGAGACATTCC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      701058 53 -   1936607 ------CTTCTTTCTCCCAATAGTTGGAAGGGTCCCTTATTTCCAGTGTGAGACATGCC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138659943 53 - 171630274 ------CTTCTTTCTCCCAACGTTTGATAGGGTCTCCTATTTCTAGTGTGTGACATCCC
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14033906 53 +  15232693 ------CGTCTTTCCCCCAACATTTGATAGGGTCTCCTGTTTCTAGTGTGAGACATCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284682 53 +    446445 ------CTTCTTTCTCCCAACATTTGATAGGGTCTCCTATTTCTAGTGTGAGACATCCC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4479335 53 + 123392446 ------CTTCTTTCCCGCAACATTCGGAAGGTTCTCCTACTTCCAGCGTGAGACATGCC
i micMur3.chr6             I 928 I 2231
s mm10.chr17                34349767 51 +  94987271 --------TTTTTTTCTCAACACTAGGATGCTCCTCTTATTCCCAGAGTGACATGAACC
i mm10.chr17               C 0 I 7
s canFam3.chr12             70385515 53 -  72498081 ------ACTCTTTCTCTTAGCATTCAGAAGATTCTCCTCTTTCCAGTGCAAGACATGCC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            476410 56 +    935526 AGATTGGTTCTTTGCCTCAACATTCTGAGGGATCTCATATTTCCTGTGTGACTCGT---
i dasNov3.JH569424         C 0 C 0
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=1248186.000000
s hg38.chr6_KI270758v1_alt     39327 141 +     76752 CGGATATCTCTGTGAGTGCAGCTT----CTTTGGGGTCCTGGGAGGAGTGTGATGGTATTAACACATTCTGTACACCCTCTCCCCGCAATTCCCCAA-G-GGGGCATCTGCATTAGTTTTGGAGTCAACTGAGGTGGGCTTCACCGA
s panTro5.chr6             142742661 141 - 175400573 CGGATATCTCTGTGAGTGCAGCTT----CTTTGGGGTCCTGGGAGGAGTGTGATGGTATTAACACATTCTGTACACCCTCTCCCCGCAATTCCCCAA-G-GGGGCATCTGCATTAGTTTAGGAGTCAACTGAGGTGGGCTTCACCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140890933 141 - 173848474 CGGATATCTCTGTGAGTGCAGCTT----CTTTGGGGTCCTGGGAGGAGTGTGATGGTATTAACACATTCTGTGCACCCTCTCCCCGCAATTCCCCAA-G-GGGGCATCTGCATTAGTTTAGGAGTCAACTGAGGTGGGCTTCACCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408431 141 +   2807050 CGGATATCTCTGTGAGTGCAGCTT----CTTTGGGGTCCTGGGAGGAGTGTGATGGTATTAACACATTCTGTACACCCTCTCCCCGCAATTCCCCAA-G-GGGGCATCTGCATTAGTTTTGGAGTCAACTGAGGTGGGCTTCACCGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701416 141 - 122973662 CGGATATCTCTGTGAGTGCAGCTT----CTTTGGGGTCCTGGGAGGAGTGTGATGGTATTAACACATTCTGTACACCCTCTCCCCGCAATTCCCCAA-G-GGGGCATCTGCATTAGTTTAGGAGTCAACTGAGGTGGGTTTCACCGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331781 141 - 172585720 CGGATATCTCAGTGAGTGCAGCTT----CTTTGGGGTCCTGGGAGGAGTGAGATGGTATTAACACATTCTATACACCCTCTCCCCGCAGTTCCCCAA-G-GGGGCATCTGCGTTAGTTTAGGAGTCAACTGAGGTGGGCTTCACCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138499306 142 + 170955103 CGGATATCTCAGTGAGTACAGCTT----CTTTGGGGTCCTGGGAGGAGTGAGATGGTATTAACACATTCTATACACCCTCTCCCCGCAGTTCCCCAAGG-GGGGTATCTGCGTTAGTTTAGGAGTCAACTGAGGTGGGCTTCACCGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206121 142 +    407600 CGGATATCTCAGTGAGTACAGCTT----CTTTGGGGTCCTGGGAGGAGTGAGATGGTATTAACACATTCTGTACAACCTCTCCCCGCAGTTCCCCAAGG-GGGGCATCTGCGTTAGTTTAGGAGTCAGCTGAGGTGGGCTTCACCGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78068 141 +    463628 CGGATATCTCAGTGAGTACAGCTT----CTTTGGGGTCCTGGGAGGAGTGAGATGGTATTAACACATTCTATACACCCTCTCCCCGCAGTTCCCCAA-G-GGGGCATCTGCGTTAGTTTAGGAGTCAACTGAGGTGGGCTTCACCAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656203 141 +  71996105 CGGATATCTCAGCGAATACAGCTT----CTTTGGGGTCCTGGGAGGAGTGAGATGGTATTAACACATTCTGTACACCCTCTCCCCGCAGTTCCCCAA-G-GGGGCATCTGCGTTAGTTTAGGAGTCAACTGAGGTGGGCTTCACCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       79221 141 -    115496 CGGATATCTCAGTGAGTACAGCTT----CTTTGGGGTCCTGGGAGGAGTGAGATGGTATTAACACATTCTATACACCCTCTCCCCGCAGTTCCCCAA-G-GGGGCATCTGCGTTAGTTTAGGAGTCAACTGAGGTGGGCTTCACCGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      701111 141 -   1936607 CGGATATCTCAGTGAGTACAGCTT----CTTTGGGGTCCTGGGAGGAGTGAGATGGTATTAACACATTCTATACACCCTCTCCCCGCAGTTCCCCAA-G-GGGACATCTGCGTTAGTTTAGGAGTCAGCTGAGGTGGGCTTCACCGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138659996 141 - 171630274 CAGATATCTCTGTGAGCGCAGCTT----CCTTGGGGTCCTTTGAGGAGTGCGATGGGACTAACACATTCTGTACCCTCACTCCCTGCAATTTCCCAA-G-GGGGTATCTGCATTAGTTTAGTAGTCAGCTGAGGTGAGTTTCACCGA
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14033959 141 +  15232693 CAGATATCTCTGTGAGCGCAGCTT----CTTTGGGGTCCTTCGAGGAGTGTGAAGGTACTAACACATTCTGTACTCTCTCTCCCTGCAATTTCCCAA-G-GGGGTATCTGCATTAGTTTAGTAGTCAACTGAGGTGCTTTTCACCGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284735 141 +    446445 CAGATATCTCTGTGAGCGCAGCTT----TTCTGGAGTCCTTCGAGGAGTGTGATGGTACTAACACATTCTGTACTCTCTCTCCCTGCAATTTCCCAA-G-GGGGTATCTGCGTTAGTTTAGTAGTCAGCTGAGGTGAGTTTCACCGA
i aotNan1.NW_018508875v1   C 0 C 0
s mm10.chr17                34349825 101 +  94987271 CTGAAATGTTGAAGGTCGCACCTCCCTGCTTTCTTCCTCTGGGAGA--------------------------GCATCTTCTTCACACAGGGCCGCAG-C-A----------ATCAGCTTTGAA--------AGAGGGGATTGACTGA
i mm10.chr17               I 7 I 411
s canFam3.chr12             70385568 134 -  72498081 TAACTATCTCTGTGAGTGCA--CT----CTCTCGGGTCCTAGGAAGAATGGAAAGGCATTAACAGCATTTGCAATTTTTCT------AATTCCCCAA-GTGAGGCATCAATGCTGGTTTGCTAGTCAACTAGTGCGAGCTTCATTGG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            476466  56 +    935526 --------TCTGTGGCTGT--CTT----C-----------------------------------------------------------ATTCCCCAA-GAGGGACATTTGCATTTGTTTGCTAGTCACCC-----------------
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=759734.000000
s hg38.chr6_KI270758v1_alt     39468 80 +     76752 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTATAGGCTCCCACCTGCAGTAGAATCAATTTTAGGTAATTTCATCATTT
s panTro5.chr6             142742802 80 - 175400573 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTACAGGCTCCCACCTGCAGTAGAATCAATTTTAAGTAATTTCATCATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891074 80 - 173848474 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTACAGGCTCCCACCTGCAGTAGAATCAATTTTAAGTAATTTCATCATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408572 80 +   2807050 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTACAGGCTCCCACCTGCAGTAGAATTAATTTTAAGTAATTTCATCATTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701557 80 - 122973662 AGCTTACATCTCTTCCTGGGAACTTGAGACTTAGAGGCTCCCACCTGCAGTAGAATCAATTTTAGGTAATTTCATTATTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139331922 80 - 172585720 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTACAGGCTCCCACCTTCAGTAAAATCAATTTTAGGTAATTTCATCATTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138499448 80 + 170955103 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTACAGGCTCCCACCTTCAGTAAAATCAATTTTAGGTAATTTCATCATTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206263 80 +    407600 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTATAGGCTCCCACCTTCAGTAAAATCAATTTTAGGTAATTTCATCATTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78209 80 +    463628 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTATAGGCTCCCACCTTCAGTAAAATCAATTTTAGGTAATTTCATCATTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656344 80 +  71996105 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTATAGGCTCCCACCTTCAGTAAAATCAATTTTAGGTAATTTCATCATTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       79362 80 -    115496 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTACAGGCTCCCACCTTCAGTAAAATCAATTTTAGGTAATTTCATCATTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      701252 80 -   1936607 AGCTTACATCTCTTCCTGGGAACTTTAGTCTTAGAGGCTCCCACCTTCAGTAAAATCAATTTTAGGTAATTTCATCATTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660137 77 - 171630274 TGCTTACATCTCTTCCTGGGA---TTCTTCTTACAGGTTCCCACCAGCAGTAGAATCAATTTTAGGTGATTTCATCGTTT
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14034100 77 +  15232693 TGCTTACATCTCTTCCTGGGA---TTGGTCTTACAGGTTCCCACCAGCAGTAGAATCAATTTTAGGTAATTTCATCATTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      284876 77 +    446445 TGCTTACATCTCTTCCTGGGA---TTCATCTTATAGGTTCCCACCAGCAGTAGAATCAATTTTAGGTAATTTCATCATTT
i aotNan1.NW_018508875v1   C 0 I 735
s canFam3.chr12             70385702 75 -  72498081 TGCTTATATCTCTTCTCAGGA-TTTGACTCCTACAGGCACCCA----CAGTGGAATTCATTTATTTTAATTTTGCCATTT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            476522 61 +    935526 -GTTTATATCTCCTCC------------------AGGCTAAAATTTGCAACAGAATTTATTTTAGGCAATTTTATCATTT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34349926 411 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=581812.000000
s hg38.chr6_KI270758v1_alt     39548 70 +     76752 TCAAAAAATAATAGATGATC----------ATTGTGATTG-TCTTAAACTTCTGTAACTCTTTCAtaaaa------gtaaatttaaa
s panTro5.chr6             142742882 70 - 175400573 TCAAAAAATAATAGATGATT----------ATTATGATTG-TCTTAAACTTCTGTAACTCTTTCATAAAA------GTAAATTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891154 70 - 173848474 TCAAAAACTAATAGATGATT----------ATTATGATTG-TCTTAAACTTCTGTAACTCTTTCAtaaaa------gtaaatttaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408652 70 +   2807050 TCAAAAAATAATAGATGATT----------ATTATGATTG-TCTTAAACTTCTGTAACTCTTTCAtaaaa------gtaaatttaaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701637 69 - 122973662 TCAAAAA-TAATAGATGATC----------ATTATGATTG-TCTTAAACTTCTGTAACTCTTTCATAAAA------GTaaatttaaa
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332002 70 - 172585720 TCAAAAAATAATAGATGATC----------AATGTGATTG-TCTTAAACTTCTGTAACTCTTTCATAAAA------GTAAATTTAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138499528 70 + 170955103 TCAAAAAATAATAGATGATC----------AATGTGATTG-TCTTAAACTTCTGTAACTCTTTCAtaaaa------gtaaatttaaa
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206343 70 +    407600 TCAAAAAATAACAGATGATC----------ATTGTGATTG-CCTTAAACTTCTGTAACTCTTTCAtaaaa------gtaaatttaaa
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78289 70 +    463628 TCAGAAAATAATAGATGATC----------ATTGTGATTG-TCTTAAACTTCTGTAACTCTTTCAtaaaa------gtaaatttaaa
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656424 70 +  71996105 TCAAAAAATAACAGATGATC----------ATTGTGATTG-CCTTAAACTTCTGTAACTCTTTCAtaaaa------gtaaatttaaa
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       79442 70 -    115496 TCAAAAAATAATAGATGATC----------AATGTGATTG-TCTTAAACTTCTGTAACTCTTTCATAAAA------GTAAATTTAAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      701332 70 -   1936607 TCAAAAAATAATAGATGATC----------ATTGTGATTG-TCTTAAACTTCTGTAACTCTTTCATAAAA------GTAAATTTAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660214 65 - 171630274 ---AAAAAAAATAGATGATC----------ATTGTGATTA-TCTTAAACTTTTATAACTCTTTCATAAAA------GTAAGTTtt--
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14034177 76 +  15232693 ----AAAAAAATAGATGATCACATAATATAATTGTGATTA-TCTTAAACTTTTATAACTCTTTCATAAAA------GTAAATTTGAA
i cebCap1.NW_016107339v1   C 0 C 0
s canFam3.chr12             70385777 71 -  72498081 TCAAAAAATCATGGTTGATA----------TTAGTGATTGtttttaaacttttatagttttttcataaaa------gtaaatttaaa
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            476583 68 +    935526 TCAAAAAATAGTGAATGGTA----------AGTGTTTTCC-GCT--------TGTAAATTTTTCACAATACATATTGTAAACTTAGA
i dasNov3.JH569424         C 0 I 17800
e mm10.chr17                34349926 411 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=63279.000000
s hg38.chr6_KI270758v1_alt     39618 34 +     76752 agtaaaaattt-----attttatttta-------------ttttatttta------tt---
s panTro5.chr6             142742952 34 - 175400573 AGTAAAatttt-----attttatttta-------------ttttatttta------tt---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891224 29 - 173848474 agtaaa----------attttatttta-------------ttttatttta------tt---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408722 25 +   2807050 agcaaa----------attttatttta-------------ttttat----------tt---
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701706 40 - 122973662 agtaaaatttt-----attttatttta-------------ttttattttattttattt---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332072 19 - 172585720 AGTAAA----------Attttattgta-----------------------------tt---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138499598 19 + 170955103 agtaaa----------attttttttta-----------------------------tt---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206413 19 +    407600 agtaaa----------attttatttta-----------------------------tt---
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78359 19 +    463628 agtaaa----------attttatttta-----------------------------tt---
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656494 19 +  71996105 agtaca----------attttatttta-----------------------------tt---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       79512 19 -    115496 AGTAAA----------Attttatttta-----------------------------tt---
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      701402 19 -   1936607 AGTAAA----------Attttatttta-----------------------------tt---
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660279 22 - 171630274 ----------------tctttctttct-------------ttctttttc-------tc---
i calJac3.chr4             C 0 C 0
s cebCap1.NW_016107339v1    14034253 28 +  15232693 AGTAAA----------Attttttttct-------------tttcttttc-------tt---
i cebCap1.NW_016107339v1   C 0 C 0
s canFam3.chr12             70385848 55 -  72498081 agtaaaataagtaaaaatttaattttaaaaatacactatttttttttttt------ttaat
i canFam3.chr12            C 0 C 0
e mm10.chr17                34349926 411 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=4276.000000
s hg38.chr6_KI270758v1_alt     39652 2 +     76752 ta-----
s panTro5.chr6             142742986 2 - 175400573 ta-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891253 2 - 173848474 ta-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408747 2 +   2807050 ta-----
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701746 2 - 122973662 ta-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332091 2 - 172585720 ta-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138499617 2 + 170955103 ta-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206432 2 +    407600 ta-----
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78378 2 +    463628 ta-----
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656513 2 +  71996105 ta-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       79531 2 -    115496 ta-----
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      701421 2 -   1936607 ta-----
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660301 7 - 171630274 tttctct
i calJac3.chr4             C 0 I 14
s cebCap1.NW_016107339v1    14034281 2 +  15232693 tt-----
i cebCap1.NW_016107339v1   C 0 C 0
e mm10.chr17                34349926 411 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e canFam3.chr12             70385903 0 -  72498081 C
e saiBol1.JH378315            213321 960 +   1154217 M
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=866031.000000
s hg38.chr6_KI270758v1_alt     39654 101 +     76752 ttttttgagacagagtctcactctgttgcccaggctggagtgcaatggcgcaatttcagctcactgcaacctccgcctcccaggttcaagtgattctccta
s panTro5.chr6             142742988 101 - 175400573 ttttttgagacagagtctcactctgttgcccaggctggagtgcaatggcacaatctcagctcactgcaacctccgcctcccaggttcaagtgattctccta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891255 101 - 173848474 ttttttgagacagagtctcactctgttgcccaggctggagtgcaatggcgtaatctcagctcactgcaacctccgcctcccaggttcaagtgattctccta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408749 101 +   2807050 ttttttgagacagagtctcactctgttgcccaggctggagtgcaatgccgcaatctcagctcactgcaacctccgccgcccaggttcaagtgattctccta
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701748 101 - 122973662 ttttttgagacagagtctcactctgtcgcccaggctggagtgcagtggcacaatctcagctcactgcaacctccgcctcccaagttcaagtgattcgccta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332093 101 - 172585720 ttttttgagatagagtcccaatctgtcacccaggctggagtgcaatggcgcaatctcagctcactgaaacctctgcctcccaggttcaagtgattctccta
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138499619 101 + 170955103 ttttttgagatagagtcccaatctgtcacccaggctggagtgcaatggcgcaatctcagctcactgaaacctctgcctcccaggttcaagtgattctccta
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206434 101 +    407600 ttttttgagatacagtctcagtctgtcacccaggctggagtgcaatggcgcaatctcagctcactgaaacctccgcctcccaggttcaagtgattctccta
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78380 101 +    463628 ttttttgagatagagtctcaatctgtcacccaggctggagtgcaatggcgcaatctcagctcactgaaacctccgcctcccaggttcaagtgattctccta
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656515 101 +  71996105 ttttttgagatagagtctcaatctgtcacccaggctggagtgcaatggcgcaatctcagctcactgaaacctctgcctcccaggttcaagtgattctccta
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       79533 101 -    115496 ttttttgagatagagtcccaatctgtcacccaggctggagtgcaatggcgcaatctcagctcactgaaacctctgcctcccaggttcaagtgattctcctA
i manLeu1.NW_012101600v1   C 0 M 505
s colAng1.NW_012115555v1      701423 101 -   1936607 ttttttgagatagagtctcaatctgtcacccaggctggagtgcaatggcgcaatctcagctcactgaaacctctgcctcccaggttcaagtgattctccta
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660322 101 - 171630274 ttttttgaggcagagtcttgctctgtcacccaggctggagtgcaatggcataatcttggctcactgcaacctctgcctcctgggttcaagtgattctccta
i calJac3.chr4             I 14 C 0
s saiBol1.JH378315            214296  99 +   1154217 tttttt--ggcagagtcttgctctgtcacccaggctggagtgcaatggcacaacctgggctcactgcaacctctgcttcccgggttcaagtgagtctcata
i saiBol1.JH378315         M 960 C 0
s cebCap1.NW_016107339v1    14034283  98 +  15232693 -ttttt--agcagagtcttgctctgtcacccacgctggagtgcaatggcgcaacctcggctcactgcaacctctgcctcccgggttcaagtgagtctccta
i cebCap1.NW_016107339v1   C 0 C 0
e mm10.chr17                34349926 411 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e canFam3.chr12             70385903   0 -  72498081 C
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=1232906.000000
s hg38.chr6_KI270758v1_alt     39755 167 +     76752 ccttagcctctggagtagctgggattacaggcgtgcaccaccacgcccagctaatttttgtatttttagtaaaaacggggtttcaccatgttgcccaggctggtctcaaactcctgacctcaggtgattcacatgcctcggcctcccaaagtgctgaaattacaggt
s panTro5.chr6             142743089 167 - 175400573 ccttagcctccggagtagctgggattacaggcgtgcaccaccacgcccagctaatttttgtatttttagtaaaaacggggtttcaccatgttgcccaggctggtctcaaactcctgacctcgggtgattcacatgcctcggcctcccaaagtgctgagattacaggt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891356 167 - 173848474 ccttagcctccggagtagctgggattacaggcgtgcaccaccacgcccagctaatttttgtatttttagtataaacggggtttcaccatgttgcccaggctggtctcaaactcctgacctcgggtgattcacatgcctcggcctcccaaagtgctgagattacaggt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2408850 167 +   2807050 ccttagcctccggagtagctgggattacaggcgtgcaccaccacgcccagctaatttttgtttttttagtaaaaacggggtttcaccatgttgcccaggctggtctcaaactcctgacctcaggtgattcacatgcctcggcctcccaaagtgctgagattacaggt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45701849 167 - 122973662 ccttagcctccagagtagctgggattacaggcgtgcaccaccatgcccaactaatttttgtactttcagtaaaaacagggtttcaccatgttgcccagactggtctcaaactcctgacctcagatgatccacatgccttggcctcccaaagtgctgagattccaggt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332194 167 - 172585720 catgagcctctggagtagctgggattacaggcgtgcaccaccatgcccagctaatttttgtatttttagtgaaaacggggtttcaccatgttgcccagactggtctcaaactcctgacctcaggtgatccacatgcctcggcctcccaaagtgctgagattacaggT
i rheMac8.chr4             C 0 I 321
s macFas5.chr4             138499720 167 + 170955103 cctgagcctctggagtagctgggattacaggcgtgcaccaccatgcccagataatttttgtatttttagtgaaaacggggtttcaccatgttgcccagactggtctcaaactcctgacctcaggtgatccacatgcctcggcctcccaaagtgctgagattacaagt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206535 167 +    407600 cctgagcctctggagtagctgggataacaggcgtgcaccaccatgcccagctaatttttgtatttttagtgaaaacggggtttcaccatgttgcccagactggtctcaaactcctgacctcaggtgatccacatgcctcggcctgccaaagtgctgagattacaggt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78481 167 +    463628 cctgagcctccggagtagctgggattacaggcgtgcaccaccatgcccagctaatttttgtatttttagtgaaaacggggtttcaccatgttgcccagactggtctcaaactcctgacctcaggtgatccacatgccttggcctcccaaagtgctgagattacaggt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656616 167 +  71996105 cctgagcctccagagtagctgggattacaggcgtgcaccaccatgcccagctaatttttgtatttttagtgaaaacggggtttcaccatgttgcccagactggtctcaaactcctgacctcaggtgatccacatgcctcagcctcccaaagtgctgagattacaggt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      701524 167 -   1936607 cctgagcctccggagtagctaggattacaggcgtgcaccaccatgcccagctaatttttgtatttttagtgaaaacgggttttcactatgttgcccagactggtctcaaactcctgacctcaggtgatccacatgcctcggcctcccaaagtgctgagattacaggt
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660423 167 - 171630274 cctcagcctcctgaggagctgggattacaggcatgtaccaccatgcctggctaagttttgtatttttagtagagacgacgtttcaccatgttgcccgggctgctctcaaactccagacctcaggtgatccacctgccttggcctcccaaagtgctgatgttacaggt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            214395 164 +   1154217 actcagcctcctgagtagctgggattac---catgagccaccatgcctggccaagttttgtgtttttagtagagatggggtttcaccatgttggccaggctgttcttgaactccagacctcagttgatacacctgccttggcctctcaaagtgctgaggttacaggt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14034381 167 +  15232693 cctcagccgcctgagtagctgggattacaggtatgtgccaccatgtctgcctaagttttgtgtttttagtagagatggggtttcaccatgttgcccagactgttcttgaaatccagacctcaggtgatccgcctgccttggcctttcaaagtgctgagattacaggt
i cebCap1.NW_016107339v1   C 0 C 0
e mm10.chr17                34349926 411 +  94987271 I
e manLeu1.NW_012101600v1       79634 505 -    115496 M
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e canFam3.chr12             70385903   0 -  72498081 C
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=149577.000000
s hg38.chr6_KI270758v1_alt     39922 28 +     76752 gtgagccaccacacccaacct-aaa--tttt
s panTro5.chr6             142743256 28 - 175400573 gtgagccaccacacccaaccT-AAA--TTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891523 29 - 173848474 gtgagccaccacacccaacctaaaa--tttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409017 28 +   2807050 gtgagccaccacacccaacct-aaa--tttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702016 28 - 122973662 gtgagccaccacgcccaacct-aaa--tttt
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             138499887 28 + 170955103 attagccatcgcacctgacct-aaa--tttt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206702 28 +    407600 attagccatcgcacctgacct-aaa--tttt
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78648 28 +    463628 attagccatcgcacctgacct-aaa--tttt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656783 28 +  71996105 attagccatcgcacctgacct-aaa--tttt
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      701691 28 -   1936607 attagccatcgcacctgaccT-AAA--TTTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660590 28 - 171630274 gtgagccactgcacccagcct-aaa--tttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            214559 30 +   1154217 gtgagccactgcacccagccT-ACatttttt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14034548 28 +  15232693 gtgagccactgcacccagccT-ACA--TTTT
i cebCap1.NW_016107339v1   C 0 C 0
e mm10.chr17                34349926 411 +  94987271 I
e manLeu1.NW_012101600v1       79634 505 -    115496 M
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e canFam3.chr12             70385903  0 -  72498081 C
e rheMac8.chr4             139332361 321 - 172585720 I
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=9399.000000
s hg38.chr6_KI270758v1_alt     39950 2 +     76752 tt-
s panTro5.chr6             142743284 2 - 175400573 TT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891552 2 - 173848474 tt-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409045 2 +   2807050 tt-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702044 2 - 122973662 tt-
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             138499915 2 + 170955103 tt-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206730 2 +    407600 tt-
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78676 2 +    463628 tt-
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656811 2 +  71996105 tt-
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      701719 2 -   1936607 TT-
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660618 2 - 171630274 tt-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            214589 2 +   1154217 tt-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14034576 2 +  15232693 TT-
i cebCap1.NW_016107339v1   C 0 C 0
s mm10.chr17                34350337 2 +  94987271 -TG
i mm10.chr17               I 411 C 0
e manLeu1.NW_012101600v1       79634 505 -    115496 M
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e canFam3.chr12             70385903 0 -  72498081 C
e rheMac8.chr4             139332361 321 - 172585720 I
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=79728.000000
s hg38.chr6_KI270758v1_alt     39952 12 +     76752 aaaattaaaaGT
s panTro5.chr6             142743286 12 - 175400573 AAAATTAAAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891554 12 - 173848474 aaaattaaaagt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409047 12 +   2807050 aaaattaaaaGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702046 12 - 122973662 aaaatttaaagt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332682 12 - 172585720 aaaaTTAAAAGT
i rheMac8.chr4             I 321 C 0
s macFas5.chr4             138499917 12 + 170955103 aaaattaaaaGT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206732 12 +    407600 aaaattaaaaGT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78678 12 +    463628 aaaattaaaaGT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656813 12 +  71996105 aaaattaaaaGT
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      701721 12 -   1936607 AAAATTAAAAGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660620 12 - 171630274 ttaattaaaaat
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            214591 12 +   1154217 ttaattaaaaat
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14034578 12 +  15232693 TTAATTGAAAAT
i cebCap1.NW_016107339v1   C 0 C 0
s mm10.chr17                34350339 12 +  94987271 AAAAATTAAACA
i mm10.chr17               C 0 C 0
e manLeu1.NW_012101600v1       79634 505 -    115496 M
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e canFam3.chr12             70385903  0 -  72498081 C
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=307790.000000
s hg38.chr6_KI270758v1_alt     39964 32 +     76752 TTTAGAGGAACTGGTTTGTCAGACACTTTTTG
s panTro5.chr6             142743298 32 - 175400573 TTTAGAGGAACTGGTTTGTCAGACACTTTTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891566 32 - 173848474 TTTAGAGGAACTGGTTTGTCAGACACTTTTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409059 32 +   2807050 TTTAGAGGAACTGGTTTGTCAGACACTTTTTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702058 32 - 122973662 ttTAGAGGAACTGATTTGTCAGACACTTTTTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332694 32 - 172585720 TTTAGAGGAACTGGTTTGTCAGACACTTTTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138499929 32 + 170955103 TTTAGAGGAACTGGTTTGTCAGACACTTTTTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206744 32 +    407600 TTTAGAGGAACTGGTTTGTCAGACACTTTTTG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78690 32 +    463628 TTTAAAGGAACTCGTTTGTCAGACACTTTTTG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656825 32 +  71996105 TTTAGAGGAACTGGTTTGTCAGACACTTTTTG
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      701733 32 -   1936607 TTTAGAGGAACTGGTTTGTCAGACACTTTTTG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660632 32 - 171630274 tttaaaGAAACTGGTTTGTCAGACACGTTTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            214603 32 +   1154217 tttaGAGAAACTGGTTTGTCAGACACTTTTTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14034590 32 +  15232693 TTTAGAGGAACTGTTCTGTCAGACACTTTTTG
i cebCap1.NW_016107339v1   C 0 C 0
s mm10.chr17                34350351 32 +  94987271 TTCAGAGGATCTGGTTTGTCAGAATCTTTTTG
i mm10.chr17               C 0 I 3799
s canFam3.chr12             70385903 32 -  72498081 ttGAGAGGAATGGGATTGTCACATAGGTTTTG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       79634 505 -    115496 M
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=191065.000000
s hg38.chr6_KI270758v1_alt     39996 27 +     76752 TAAAGTATATGACAGCCATGTATGTAA--------
s panTro5.chr6             142743330 27 - 175400573 TAAAGTATATGATAGCCATGTATGTAA--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891598 27 - 173848474 TAAAGTATATGATAGCCATGTATGTAA--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409091 27 +   2807050 TAAAGTATATGACAGCCACGTATGTAA--------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702090 27 - 122973662 TAAAGTGTATGACAGCCATGTATGTAA--------
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332726 27 - 172585720 TAAAGTATATGACAGCCATGTATATAG--------
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138499961 27 + 170955103 TAAAGTATATGACAGCCATGTATATAG--------
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206776 27 +    407600 TAAAGTATATGACAGCCATGTATATAG--------
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78722 27 +    463628 TAAAGTATATGACAGCCATGTATGTAA--------
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656857 27 +  71996105 TAAAGTATATGACAGCCATGTATGTAA--------
i chlSab2.chr17            C 0 C 0
s colAng1.NW_012115555v1      701765 27 -   1936607 TAAAGTATATGACAGTCATGTATGTAA--------
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660664 27 - 171630274 TAAAGTATATGGCAGCAGTGTTTATAA--------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            214635 27 +   1154217 TAAAGTATATGACAGCAATGTATGTAA--------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14034622 27 +  15232693 TAAAGTATATGACAGCAATGTATGTAA--------
i cebCap1.NW_016107339v1   C 0 C 0
s canFam3.chr12             70385935 32 -  72498081 --GATTCTGAGACAGT-GTGGATCTGATAGTACAA
i canFam3.chr12            C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e manLeu1.NW_012101600v1       79634 505 -    115496 M
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=867636.000000
s hg38.chr6_KI270758v1_alt     40023  99 +     76752 AGAGCTCAAC---TTAGACTGTAGGTCAGCCAGAACTAAGA-ATACCTCAGTCCTCCATCCCTAAATGTTTGGGCATTT-------TCCTATTCAGAAGTTCTACTGCCT
s panTro5.chr6             142743357  99 - 175400573 AGAGCTCAAC---TTAGACTGTAGGTCAGCCAGAACTAAGA-ATACCTCAGTCCTCCATCCCTAAATGTTTGGGCATTT-------TCCTATTCAGAAGTTCTACTCCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891625  55 - 173848474 AGAGCTCAAC---TTAGACTGTAGGTCAGCCAGAACTAAGA-ATACCTCAGTCCTCCAT---------------------------------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409118  99 +   2807050 AGAGCTCAAC---TTAGACTGTAGGTCAGCCAGAACTAAGA-ATATCTCAGTCCTCCATCCCTAAATGTTTGGGCATTT-------TCCTATTCAGAAGTTCTACTGCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702117  98 - 122973662 AGAGCTCAAC---TTAGACTGTAGGTCAGCCAGAACTAAGA-ATACCTCAGTCCT-CATCCCTAAATGTTTGGGCATTT-------TACTATTCAGAAGTTCTACGGCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332753  99 - 172585720 AGAGCTCAAC---TTAGACTATAGGTCAGCCAGAACTAAGA-ATACCTCAGTCCTCCATCCCTAAATGTTTGGGCATTT-------TACTATTCAGAAGTTCTACTGCTT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138499988  99 + 170955103 AGAGCTCAAC---TTAGACTATAGGTCAGCCAGAACTAAGA-ATACCTCAGTCCTCCATCCCTAAATGTTTGGGCATTT-------TACTATTCAGAAGTTCTACTGCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206803  99 +    407600 AGAGCTCAAC---TTAGACTATAGCTCAGCCAGAACTAAGA-ATACCTCAGTCCTCCATCCCTAAATGTTTGGGCATTT-------TACTATTCAGAAGTTCTACTGCCT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78749  99 +    463628 AGAGCTCAAC---TTAGGCTATAGGTCAGCCAGAACTAAGA-ATACCTCAGTCCTCCATCCCTAAATGTTTGGGCATTT-------TACTGTTCAGAAGTTCTACTGCCT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656884  99 +  71996105 AGAGCTCAAC---TTAGACTATAACTCAGCCAGAACTAAGA-ATACCTCAGTCCTCCATCCCTAAATGTTTGGGCATTT-------TACTATTCAGAAGTTCTACTGCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80139  99 -    115496 AGAGCTCAAC---TTAGACTATAGGTCAGCCAGAACTAAGA-ATACCTCAGTCCTCCATCCCTAAATGTTTGGGCATTT-------TACTATTCAGAAGTTCTACTGCTT
i manLeu1.NW_012101600v1   M 505 C 0
s colAng1.NW_012115555v1      701792  99 -   1936607 AGAGCTCAAC---TTAGACTATAGGTCAGCCAGAACTAAGA-ATACCTCAGTCCTCCATCCCTAAATGTTTGGGCATTT-------TACTATTCAGAAGTTCTACTGCCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660691  99 - 171630274 AGAGCTCAAC---TTAGACTGTAGGTCAGCCAGCGCTAAGA-ATGCCTCAGTCCTCCACTCCTGAATGTTTGGGTATTT-------TACTATTCAGAAGTTCTACTGCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            214662  99 +   1154217 AGAGCTCAAC---TTAGACTGTAGGTCAGCCAGAACTAAGA-ATGCTTCAGTCCTCCGCTCCTAAATGTTTGGATATTT-------TACTATTCAGAAGTTCTTCTGCCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14034649  98 +  15232693 AGAGCTCAAC---TTAGACTGTAGGTCAGCCAG-ACTAAGA-ATGCTTCAGTCCTCCGCCCCTAAATGTTTGGGTATGT-------TACTCTTCAGAAGTTCTTCTGCCT
i cebCap1.NW_016107339v1   C 0 C 0
s canFam3.chr12             70385967 110 -  72498081 AGACCTCTTCCTTTCAGACTGTAGGTCTGTCAGAACCAGGATATAGCTCAGTTCCCCATGCCTAGATGTTTGGGTATTTCAAGTACCACTCTGCAGAAGTTCTATTGCCT
i canFam3.chr12            C 0 I 2833
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=198820.000000
s hg38.chr6_KI270758v1_alt     40122 41 +     76752 GCccttcc--------------------tc---------ctttcttctcttttctttctttt--cttctttt-----
s panTro5.chr6             142743456 41 - 175400573 GCCCTTCC--------------------TC---------Ctttcttctcttttctttttttt--cttctttt-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891680 48 - 173848474 -------CNNNNNNNNNNNNNNNNNNNNtt---------ctttc------tttcttttcttt--cttctttt-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409217 43 +   2807050 GCctttcc--------------------tc---------ctttcttctcttttctttttttttcttcctttt-----
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702215 50 - 122973662 GCccttcc--------------------tcccttcttctctttcttctcttttcttttcttt--cttctttt-----
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332852 41 - 172585720 GCccttcc--------------------tc---------ccttcttctcttttcttttcttt--cttctttt-----
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500087 41 + 170955103 GCccttcc--------------------tc---------ccttcttctcttttcttttcttt--cttctttt-----
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206902 41 +    407600 GCccttcc--------------------tc---------ccttcttctcttttcttttcttt--cttctttt-----
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78848 36 +    463628 GCccttcc--------------------tc---------ccttcttc-----tcttttcttt--cttctttt-----
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39656983 34 +  71996105 GCccttcc--------------------tc---------ccttcttc-----tcttttctt----ttctttc-----
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80238 36 -    115496 GCccttcc--------------------tc---------ccttcttc-----tcttttcttt--cttctttt-----
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      701891 41 -   1936607 GCccttcc--------------------tc---------ccttcttctcttttcttttcttt--cttctttt-----
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660790 29 - 171630274 GCccttct--------------------tc---------ccttcttt-----tcttttcttt--c------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            214761 29 +   1154217 ACccttct--------------------tc---------ccttcttg-----tctttccttt--c------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14034747 41 +  15232693 GCccttcc--------------------tc---------tcttcttt-----tcttttcttt--ctccttttctttt
i cebCap1.NW_016107339v1   C 0 I 1530
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e canFam3.chr12             70386077 2833 -  72498081 I
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=585554.000000
s hg38.chr6_KI270758v1_alt     40163 107 +     76752 t-----tcttttcttttctttccctccctccttcctcccccctccctcccttcctccctttcttcctttcttctttccttctttcc--ttctttTT-GCCAATCAAGAAA-AATGG
s panTro5.chr6             142743497  99 - 175400573 t-----tcttttcttttctttccctccctcctccctcccccctccctcccttcctcccttccttcctttcttctttccttcttt----------TT-GCCAATCAAGAAA-AATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891728 103 - 173848474 t-------cttttctttctttccctccctcctccctcccccctccctcccttcctcccttccttcctttcttctttccttcttc----ctcttttt-GCCAATCAAGAAA-AATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409260 100 +   2807050 t-----tcttttcttttctctccctccctcctccct-cccccttcctcccttccttcctttcttctttccttctttccttcttt--------tttt-GCCAATCAAGAAA-AATGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702265 113 - 122973662 t-cttttcttttcttttccatccctccctcctccctgccccctccttcccttcctcccttccttcctttcttctttccttctttccttctttTTTT-GCCAATCAAGAAA-AATGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332893 102 - 172585720 ttattttcctttcttttccctcccttcctcctccctcctcactccctcccttcctcccttctttc------------cttctttccttctttTTTT-GCCAATCAAGAAA-AATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500128 102 + 170955103 ttattttcctttcttttccctcccttcctcctccatcctcactccctcccttcctcccttctttc------------cttctttccttctttTTTT-GCCAATCAAGAAA-AATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      206943 114 +    407600 ttcttttcctttcttttccctccctccctccaccctccccactccctcccttcctcccttccttcctttcttcttctcttctttccttcttttTTT-GCCAATCAAGAAA-AATGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78884 106 +    463628 ttcttttcctttcttttccctcccttcctcctccctcctcactccctcccttcctccctttcttc--------tttccttctttccttctttTTTT-GCCAATCAAGAAA-AATGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657017 114 +  71996105 ttcttttcctttcttttccctcccttcctccaccctccccactccctccattcctcccttccttcctttcttcttcccttctttccttcttttTTT-GCCAATCAAGAAA-AATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80274 115 -    115496 ttcttttcctttcttttccctcccttcctcctccctccccactccctcccttcctcccttccttcctttcttcttcccttctttccttctttTTTT-GCCAATCAAGAAATAATGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      701932 106 -   1936607 ttcttttcctttcttttccctcccttcttcctccctccccactccctcccttcctccctttcttc--------tttccttctttccttctttTTTT-GCCAATCAAGAAA-AATGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660819  83 - 171630274 -----ttcttttcttttccctccctctcttc----------cttccttctttccttccttccttccttttttctttTTTt-----------------gtcaatcaagaaa-aacga
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            214790 100 +   1154217 -----ttcttttcttttccctccctcccttc----------cttccttctttccttccttccttttttttttttttttttttttttttttttttttGgtcagtcaagaaa-aatga
i saiBol1.JH378315         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e cebCap1.NW_016107339v1    14034788 1530 +  15232693 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e canFam3.chr12             70386077 2833 -  72498081 I
e otoGar3.GL873550          15339548 556 -  18854210 I
e dasNov3.JH569424            476651 17800 +    935526 I

a score=19845.000000
s hg38.chr6_KI270758v1_alt     40270 3 +     76752 -CCA
s panTro5.chr6             142743596 3 - 175400573 -CCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891831 3 - 173848474 -CCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409360 3 +   2807050 -CCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702378 3 - 122973662 -CCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332995 3 - 172585720 -CCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500230 3 + 170955103 -CCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207057 3 +    407600 -CCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78990 3 +    463628 -CCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657131 3 +  71996105 -CCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80389 3 -    115496 -CCA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702038 3 -   1936607 -CCA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660902 3 - 171630274 -caa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            214890 3 +   1154217 -cca
i saiBol1.JH378315         C 0 I 1513
s dasNov3.JH569424            494451 3 +    935526 CCC-
i dasNov3.JH569424         I 17800 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e cebCap1.NW_016107339v1    14034788 1530 +  15232693 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e canFam3.chr12             70386077 2833 -  72498081 I
e otoGar3.GL873550          15339548 556 -  18854210 I

a score=11504.000000
s hg38.chr6_KI270758v1_alt     40273 1 +     76752 G
s panTro5.chr6             142743599 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891834 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409363 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702381 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332998 1 - 172585720 G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500233 1 + 170955103 G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207060 1 +    407600 G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78993 1 +    463628 G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657134 1 +  71996105 G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80392 1 -    115496 G
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702041 1 -   1936607 G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138660905 1 - 171630274 g
i calJac3.chr4             C 0 I 1408
s saiBol1.JH378315            216406 1 +   1154217 G
i saiBol1.JH378315         I 1513 C 0
s cebCap1.NW_016107339v1    14036318 1 +  15232693 G
i cebCap1.NW_016107339v1   I 1530 C 0
s otoGar3.GL873550          15340104 1 -  18854210 G
i otoGar3.GL873550         I 556 C 0
s dasNov3.JH569424            494454 1 +    935526 A
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e canFam3.chr12             70386077 2833 -  72498081 I

a score=252698.000000
s hg38.chr6_KI270758v1_alt     40274 31 +     76752 AGGTGCAGATTGAACCGTGGCCACGC-TGTGA
s panTro5.chr6             142743600 31 - 175400573 AGGTGCAGATTGAACCGTAGCCACGC-TGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891835 31 - 173848474 AGGTGCAGATTGAACCATAGCCACGC-TGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409364 31 +   2807050 AGGTGCAGATTGAACCGTGGCCACGC-TGTGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702382 31 - 122973662 AGGTGCAGATTGAACCGCGGCCACGC-TGTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139332999 31 - 172585720 ATGTGCAGATTGAACCGTGGTCATGC-TGTGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500234 31 + 170955103 ATGTGCAGATTGAACCGTGGTCATGC-TGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207061 31 +    407600 ATGTGCAGATTGAACCGTGGTCATGC-TGTGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       78994 31 +    463628 ATGTGCAGATTGAACCGTGGTCATGC-TGTGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657135 31 +  71996105 ATGTGCAGATTGAACCGTGGTCATGC-TGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80393 31 -    115496 ATGCGCAGATTGAACCGTGGTCATGC-TGTGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702042 31 -   1936607 ATGTGCGGATTGAACCGTGGTCATGC-TGTGA
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            216407 31 +   1154217 AGGTGCAGACTGAACCATGTCCACAC-TGTGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14036319 31 +  15232693 AGGTGCAGACTGAACCATGGCCACAC-TGTGA
i cebCap1.NW_016107339v1   C 0 C 0
s otoGar3.GL873550          15340105 30 -  18854210 AGGTGCTCCCTGAACTGCGGTCACTC--GTGA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            494455 32 +    935526 AGATGCTGACTGAACTCTGGTCCTACTTGCAA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e aotNan1.NW_018508875v1      284953 735 +    446445 I
e calJac3.chr4             138660906 1408 - 171630274 I
e canFam3.chr12             70386077 2833 -  72498081 I

a score=1635331.000000
s hg38.chr6_KI270758v1_alt     40305 160 +     76752 GGAAAGGCCTC--CGT---CCTGTGAGCACC-ACCCTCCCCTCACTGGCCTCGGGAATCCCAGGCCCCCCACTCACATCTGGGGGAGGAGTCGCAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGTCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTG
s panTro5.chr6             142743631 160 - 175400573 GGAAAGGCCTC--CGT---CCTGTGAGCACC-ACCCTCCCCTCACTGGCCTCGGGAATCCCAGGCCCCCCACTCACATCTGGGGGAGGAGTCGCAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGTCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140891866 160 - 173848474 GGAAAGGCCTC--TGT---CCTGTGAGCACC-ACCCTCCCCTCACTGGCCTCAGGAATCCCAGGCCCCCCACTCACATCTGGGGGAGGAGTCGCAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGTCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409395 160 +   2807050 GAAAAGGCCTC--CGT---CCCACGAGCACC-ACCCTCCCCTCACTGGCCTCGGGAATCCCAGGCCCCCCACTCACATCTGGGGGAGGAGTCGCAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGTCAGCAACCCGA-GGGGACTGTGGA-GGACAAGCCACTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702413 160 - 122973662 GGAAAGGCCTC--CGT---CTCGTGAGCACC-ACCCTCCCCTCACTGGCCTCGGGAATCCCAGGCCCCCCATTCACATCTGGGGGAGGAGTCGCAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGGCAGCAAACCGA-AGGGGCTGTGGA-GGACAAGCCACTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139333030 159 - 172585720 GGAAAGGCCTC--CGT---CCCGTGAGCACC-AGCCTCCCCTCACTGGCCTCGGGAATCCCAGG-CCCCCACTCACATCTGGGGGAGGAGGTGTAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGGCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500265 159 + 170955103 GGAAAGGCCTC--CGT---CCCGTGAGCACC-AGCCTCCCCTCACTGGCCTCGGGAATCCCAGG-CCCCCACTCACATCTGGGGGAGGAGGTGTAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGGCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207092 159 +    407600 GGAAAGGCCTC--CGT---CCCGTGAGCACC-AGCCTCCCCTCACTGGCCTCGGGAATCCCAGG-CCCCCACTCACATCTGGGGGAGGAGGCGTAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGGCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       79025 159 +    463628 GGAAAGGCCTC--CGT---CCCACAAGCACC-AGCCTCCCCTCACTGGCCTCGGGAATCCCAGG-CCCCCACTCACATCTGGGGGAGGAGGCGTAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGGCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657166 160 +  71996105 GGAAAGGCCTC--CGT---CCCGTGAGCACC-AGCCTCCCCTCACTGGCCTCGGGAATCCCAGG-CCCCCACTCACATCTGGGGGAGGAGGCGTAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGGCAGCAAACCGAGGGGGACTGTGGA-GGACAAGCCACTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80424 160 -    115496 GGAACGGCCTC--CGT---CCCGTGAGCACC-AGCCTCCCCTCACTGGCCTCGGGAATCCCAGG-CCCCCACTCACATCTGGGGGAGGAGGTGTAGGGCTTCTGCAGGTGCTCTCTCTCCTCCAGTCAGGCAGCAAACCGAGGGGGACTGTGGA-GGACAAGCCACTG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702073 159 -   1936607 GGAAAGGCCTC--CGT---CCGGTGAGCACC-AGCCTCCCCTCACTGGCCTCGGGAATCCCAGG-CCCCCACTCACATCTAGGGGAGGAGTCGTAGGGCTTCTGCAGGTGCTGTCTCTCCTCCCGTCAGGCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138662314 155 - 171630274 GGAAGGGCCTC--CTT---CCCGTGAGCACC-ACCCTCCC--CAGTGCCCTTGGGAACCCCAGGCCCACCACTCACATCTGGGGGAGGAGCCA-AGGGCTTCTGCCAGTGC--TCCCTCCTCCAATCAGGCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTC
i calJac3.chr4             I 1408 C 0
s saiBol1.JH378315            216438 155 +   1154217 GGAAAGGCCTC--CGT---CCCGTGAGCACC-ACCCTCCC--CAGTGCCCTCGGGAACCCCAGGCCCACCACTCGCATCTGGGGGAGGAGCTG-AGGGCTTCTGCCCGTCC--TCTGTCCTCCAGTCAGGCAGCAAACCGA-GGGGACCGTGGA-GGACAAGCCACCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14036350 155 +  15232693 GGAAAGGCCTC--CGT---CCCATGAGCACC-ACCCTCCC--CAGTGCCCTCGGGAACCCCAGGCCCACCCCTCGCATCTGGGGGAGGAGCTG-AGGGCTTCTGCCCATGC--TCTCTCCTCCAGTCAGGCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      285688 155 +    446445 GGAAGGGCCTC--CTT---CCCGTGAGCACC-ACCCTCCC--CAGTGCCCTCGGGAACCCCAGGCCCACCACTTGCATCTAGGGGAGGAGCCA-AGGACTTCTGCCGGTGC--TCTCTCCTCCAATCAGGCAGCAAACCGA-GGGGACTGTGGA-GGACAAGCCACTC
i aotNan1.NW_018508875v1   I 735 C 0
s otoGar3.GL873550          15340135 158 -  18854210 AGAAAGGCCTC--TGTCCACCTGTGAGCATC-GTCCTCCCCTCAGTGTCCTTGGAAATGCCAGGCCCATGACACAAAATCTAGATGGGCATCTCAGGGCTCCTGTCAGTGCTTTCTC-CCCCCAGACAG-TAGCACA-CAA-GAGGACTATGGA---ACAACTAACTG
i otoGar3.GL873550         C 0 I 3
s dasNov3.JH569424            494487 161 +    935526 AGAAAGACCCCATCTA---CCTGTAAGCCCCTGCCCTCCCCTCAGTGCTCTTGGGAACACCAGCCTCATGACACAGCGTTCCAGTGGGTGGCTCAGAGCTTCTGTCAGGGCT-GCTCCACTCCAGTGACAAAGCA--CCAA-GAAGACTGGAGAAAGACATACTACTC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      141469 2212 +   1371726 I
e canFam3.chr12             70386077 2833 -  72498081 I

a score=674047.000000
s hg38.chr6_KI270758v1_alt     40465 52 +     76752 TGCCTCCAGGAGATGAGAGCTGCTGATTTTTCTTTCCTTTCCCTGAGGAA--AC
s panTro5.chr6             142743791 52 - 175400573 TGCCTCCAGGAGATGAGAGCTGCTGATTTTTCTTTCCTTTCCCTGAGGAA--AC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892026 52 - 173848474 TGCCTCCAGGAGATGAGAGCTGCTGATTTTTCTTTCCTTTCCCTGAGGAA--AC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409555 52 +   2807050 TGCCTCCAGGAGATGAGAGCTGCTGATTTTTCTTTCCTTTCCCTGAGGAA--AC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702573 51 - 122973662 TGCCTCCAGGAGATGAGAGCTGCTGATTTTTC-TTCCTTTCCCTGAGGAA--AC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139333189 52 - 172585720 TGCCTCCAGGAGATGAGAGCTGCTGCTTTTTCTTTCCTTTCCCTGAGGAA--AC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500424 52 + 170955103 TGCCTCCAGGAGATGAGAGCTGCTGCTTTTTCTTTCCTTTCCCTGAGGAA--AC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207251 52 +    407600 TGCCTCCAGGAGATGAGAGCTGCTGCTTTTTCTTTCCTTTTCCTGAGGAA--AC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       79184 52 +    463628 TGCCTCCAGGTGATGAGAGCTGCTGATTTTTCTTTCCTTTCCCTGAGGAA--AC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657326 52 +  71996105 TGCCTCCAGGAGATGAGAGCTGCTGATTTTTCATTCCTTTCCCTGAGGAA--AC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80584 52 -    115496 TGCCTCCAGGAGATGAGAGCTGCTGATTTTTCGTTCCTTTCCCTGAGGAA--AC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702232 52 -   1936607 TGCCTCCAGGAGATGAGAGCTGCTGATTTTTCTTTCCTTTCCCTGAGGAA--AC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138662469 52 - 171630274 AGCCTCCAGGAGATGAGCGCTGCTGATTTTTCTTTCCTTTCCCTGAGGAA--AC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            216593 54 +   1154217 TGTCTCCAGGAGGTGAATGCTGCTGATTTTTCTTTCCTTTCCCCGAGGAAACAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14036505 52 +  15232693 TGCCCCCAGGAGATGAGCGCTGCTGATTTTTTTTTCCTTTCCCTGAGGAA--AC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      285843 54 +    446445 TGCCTCCAGGAGATGAGCGTTGCTGATTTTTCTTTCCTTTCGCTGAGGAAACAC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      143681 52 +   1371726 TGCCACCACGAGATGGGGGCTGCTGATTTTTCCTTCCTTTCCCCGAGGGA--AC
i proCoq1.NW_012150019v1   I 2212 I 114
s otoGar3.GL873550          15340296 52 -  18854210 CACCACCAGGAGCTGGGGGCTGCTGACTTTCCTTTCCTTTCCCCAGGGAA--GT
i otoGar3.GL873550         I 3 C 0
s dasNov3.JH569424            494648 52 +    935526 TGCCACAAGGATGGGAATGTTTTAAATTTTTCTTTCTTTTCCCTGAAGGA--AC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e canFam3.chr12             70386077 2833 -  72498081 I

a score=1287858.000000
s hg38.chr6_KI270758v1_alt     40517 116 +     76752 GATACCTGTATAAGTCTCACTGCTGGGAGACTCCACAAAGT-----AATCATCTTTCTGGTGAGTTGATCTGAGAGCTCTCAAAACATCTTTCAACCAGGTCCCCAAGAAACAGCTGATGG
s panTro5.chr6             142743843 116 - 175400573 GATACCTGTATAAGTCTCACTGCTGGGAGACCCCGCAAAGT-----AATCATCTTTCTGGTGAGTTGATCTGAGAGCTCTCAAAACATCTTTCAACCAGGTCCCCAAGAAACAGCTGATGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892078 116 - 173848474 GATACCTGTATAAGTCTCACTGCTGGGAGACCCCGCAAAGT-----AATCATCTTTCTGGTGAGTTGATCTGAGAGCTCTCAAAACATCTTTCAACCAGGTCCCCAAGAAACAGCTGATGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409607 116 +   2807050 GATACCTGTATAAGTCTCACTGCTGGGAGACTCCACAAAGT-----AATCATCTTTCTGGTGAGTTGATCTGAGAGCTCTCAAAACATCTTTCAACCAGGTCCCCAAGAAACAGCTGATGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702624 116 - 122973662 GATACCTGTATCAGTCTCACTGCTGGGGGACTCCACAAAGT-----AATCATCTTTCTGGTGAGTTGATCTGAGAACTCTCAAAACACCTTTCAACCAGGTCCCCAAGAAACAGCTGATGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139333241 116 - 172585720 GATACCTGTATAAGTCTCACTATTGGGAGACTCCACAAAGT-----AATCATCTTTCTGGTGAGTTGATCTGAGAGCTCTCAAAACATCTTTCAACCAGGTCCCCAAGAAACAGCTGATGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500476 116 + 170955103 GATACCTGTATAAGTCTCACTGTTGGGAGACTCCACAAAGT-----AATCATCTTTCTGGTGAGTTGATCTGAGAGCTCTCAAAACATCTTTCAACCAGGTCCCCAAGAAACAGCTGATGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207303 116 +    407600 GATACCTGTATAAGTCTCACTATTGGGAGACTCCACAAAGT-----AATCATCTTTCTGGTGAGTTGATCTGAGAGCTCTCAAAACATCTTTCAGCCAGGTCCCCAAGAAACAGCTGATGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       79236 116 +    463628 GATACCTGCATAAGTCCCACTGTTGGGAGACTCCACAAAGT-----AATCATCTTTCCGGTGAGTTGATCTGAGAGCTCTCAAAACATCTTTCAACCAGGTCCCCAAAAAACAGCTGATGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657378 116 +  71996105 GATACCTGTATAAGTCTCACTGTTGGGAGACTCCACAAAGT-----AATCATCTTTCTGGTGTGTTGATCTGAGAGCTCTCAAAACATCTTTCAACTAGGTCCCCAAGAAACAGCTGATGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80636 116 -    115496 GATACCTGTATAAGTCTCACTGCGGGGAGACTCCACAAAGT-----AATCATCTTTCCGGTGAGTTGATCTGAGAGCTCTCAAAACGTCTTTCAACCAGGTCCCCAAGAAACAGCTGATGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702284 116 -   1936607 GATACCTATATAAGTCTCACTGTTGGGAGACTCCACAAAGT-----CATCATCTTTCTGGTGAGTTGATCTGAGAGCTCTCAAAACATCTTTCAACCAGGTCCCCAAGAAACAGCTGATGG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138662521 116 - 171630274 AATACATGTGTAAGTCTCACTGCTGGGGGACTCCACAAAAT-----TATCATCTTTCTGCTGAGCTGATCTAATAACTTTCAAAACATCTTTCATCCAAGTCCTCAGGAAACAGCTGATGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            216647 116 +   1154217 AATACATGTGTAAGTCTCGCTGCTGGGGGACTCCACAAAAT-----TATCATCTTTCTGGGGAGCCGATCTGAGAACTTTCAAAACATCTTTCATCCAAGTCCCCAAGACACAGCTGATGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14036557 116 +  15232693 AATACATGTGTAAGTCTCACTGCTGGGGGACTCCACAAAAT-----TGTCATCTTTCTGGTGAGCTGATCTGAGAACTTTCAAAACATCTTTCATCCAAGTCCCCAAGAAACAGCTGATGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      285897 116 +    446445 AATACATGTGTAAGTGTCACTGCTGGGGGACTCCACAAAAT-----TATCATCTTTCTGGTGAGCTTATCTGACAACTTTTAAAACATCTTTCATCCAAGTCCCCAAGAAACAGCTGATGG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15340348 114 -  18854210 ---GCATTTCTAAGTCCCATTACTGAGCGACTCTACCAAAT----AAATTATCTTTCTGGTGAGCTGATCTGACAACTTTCAGAAAACCTTTCCACCAGGTCCGAAAGAAGCAGCTGATGA
i otoGar3.GL873550         C 0 I 1
s dasNov3.JH569424            494700 114 +    935526 TCTACATTTGTAAGTTCTGTCGCTAGG-GTCTCTTTGAAATATATAAGTAATTTTTCGGATGAGTTGATCTGACAATCCCCCCAAT-TTTTTCCACCACATCCCCAGGA-----CTGATGG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      143733 114 +   1371726 I
e canFam3.chr12             70386077 2833 -  72498081 I

a score=67003.000000
s hg38.chr6_KI270758v1_alt     40633 6 +     76752 -CGTCGC
s panTro5.chr6             142743959 6 - 175400573 -CGTCGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892194 6 - 173848474 -CGTCGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409723 6 +   2807050 -CGTCGC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702740 6 - 122973662 -CGTCGC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139333357 6 - 172585720 -CGTCGC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500592 6 + 170955103 -CGTCGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207419 6 +    407600 -CGTCGC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       79352 6 +    463628 -CGTCGC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657494 6 +  71996105 -CGTCGC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80752 6 -    115496 -CGTCGC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702400 6 -   1936607 -CGTCAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138662637 6 - 171630274 -CATCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            216763 6 +   1154217 -CATCAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14036673 6 +  15232693 -CACCAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      286013 6 +    446445 -CATCAC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15340463 6 -  18854210 -CCCCAC
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70388910 6 -  72498081 -CATCAC
i canFam3.chr12            I 2833 C 0
s dasNov3.JH569424            494814 7 +    935526 CCACTAC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      143733 114 +   1371726 I

a score=2285485.000000
s hg38.chr6_KI270758v1_alt     40639 187 +     76752 CTGAACTTCTCCATATTCATAGCAACACTTTCCTGACAT-TTCTTGGATTGACCTTGATTTCTTATCTTCATTTCT-AATCTCCTCTATTTTTCTA-TCCACCTTCTTTCCAAGACCTTCCATTCCCAGTAATGACACCT-------------AATAGCTATATAGG-------------------------------------------GA-TTTTGTATCATGATTATATtcttactttatcctt
s panTro5.chr6             142743965 185 - 175400573 CTGAACTTCTCCATATTCATAGCAACACT--CCTGAAAT-TTCTTGGATTGACCTTGATTTCTTATCTTCATTTCT-AATCTCCTCTGTTTTTCTA-TCCACCTTCTTTCCAAGACCTTCCACTCCCAGTAatgacacct-------------tatagctatacagg-------------------------------------------ga-ttttgtatcatgattatattcttactttatcctt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892200 185 - 173848474 CTGAACTTCTCCATATTCATAGCAACACT--CCTGACAT-TTCTTGGATTGACCTTGATTTCTTATCTTCATTTCT-AATCTCCTCTGTTTTTCTA-TCCACCTTCTTTCCAAGACCTTCCACTCCCAGTAatgacacct-------------aatagctatacagg-------------------------------------------ga-ttttgtatcacgattatattcttactttatcctt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409729 185 +   2807050 CTGAACTTCTCCATATTCATAGCAACACT--CCTGACAT-TTCTTGGATTGACCTTGATTTCTTATCTTCATTTCT-AATCTCCTCTATTTTTCTA-TCCACATTCTTTCCAAGACCTTCCACTCCTAGTAATGACACCT-------------AATAGCTATATAGG-------------------------------------------AA-TTTTGTATCATGATTATATTCTTACTTTATCCTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702746 185 - 122973662 CTGAACTTCTCCATATTCATAGCAGCACT--CCTGACAT-TGCTTGGATTGACCTTGTTTTCTTATCTTCATTTCT-AACCTCTTCTATTTTTCTA-TCCACCTTCTTTCCAAGGCCTTCCACTCCCAGTAatgacacct-------------tatagcattacagg-------------------------------------------gc-ttttgtatcgtgattatattcttactctatcctt
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139333363 185 - 172585720 CTGAACTTCTCCATATTCATAGCAACACT--CCTAACAT-TGCTTGGATTGATCTTGTTTTCTTATCTTCAGTTCT-AACCTCCTCTATTTTTCTA-TCCACCTTCTTTCCAAGGCCTTCCACTCCCAGTAatgacacct-------------tatagctatatagg-------------------------------------------ga-ttttgtatcatgattatattcttactctatcctt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500598 185 + 170955103 CTGAACTTCTCCATATTCATAGCAACACT--CCTAACAT-TGCTTGGATTGATCTTGTTTTCTTATCTTCAGTTCT-AACCTCCTCTATTTTTCTA-TCCACCTTCTTTCCAAGGCCTTCCACTCCCAGTAATGACACCT-------------TATAGCTATATAGG-------------------------------------------GA-TTTTGTATcatgattatattcttactctatcctt
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207425 186 +    407600 CTGAACTTCTCCATATTCATAGCAACACT--CCTAACAT-TGCTTGGATTGATCTTGTTTTCTTATCTTCAGTTCTAAACCTCCTCTATTTTTCTA-TCCACCTTCTTTCCAAGGCCTTCCACTCCCAGTAATGACACTT-------------TATAGCTATATAGG-------------------------------------------AA-TTTTGTATCATGATTATATTCTTACACTATCCTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       79358 185 +    463628 CTGAACTTCTCCATATTCATAGCAACACT--CCTAACAT-TGCTTGGATTGATCTTGTTTTCTTATCTTCAGTTCT-AACCTCCTCTATTTTTCTA-TCCACCTTCTTTCCAAGGCCTTCCACTCCCAGTAatgacacct-------------tatagctatatagg-------------------------------------------ga-ttttgtgtcatgattatattcttactctatcctt
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657500 185 +  71996105 CTGAACTTCTACATGCTCATAGCAACACT--CCTAACAT-TGCTTGGATTGATCTTGTTTTCTTATCTTCAGTTCT-AACCTCCTCTATTTTTCTA-TCCGCCTTCTTTCCAAGACCTTCCACTCCCAGTAATGACACCT-------------TATAGCTATATAGG-------------------------------------------GA-TTTTGTATCATGATTATATTCTTACTCTATCCTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80758 186 -    115496 CTGAACTTCTCCGTATTCATAGCAACACT--CCTAACAC-TGCTTGGATTGATCTTGTTTTCTTATCTTCAGTTCTAAACCTCCTCTATTTTTCTA-TCCACCTTCTTTCCAAGGCCTTCCACTCCCAGTAATGACACCT-------------TATAGCTATATAGG-------------------------------------------GA-TTTTGTATcatgattatattcttatactatcctt
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702406 185 -   1936607 CTGAACTTCTCCATATTCATAGCAACACT--CCTAACAT-TGCTTGGATTGATCTTGTTTTCTTACTTTCAGTTCT-AACCTCCTCTGTTTTTCTA-TCCACCTTCTTTCCAAGGCCTTCCACTCCCAGTAatgacacct-------------tatagctatatagg-------------------------------------------ga-ttttgtatcatgattatattcttcctctatcctt
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138662643 179 - 171630274 CTGAA---CTCAGTATTCAT---AACACT--CCCGATAT-TGCTTGGATTGACCTTGTTTTCTTATCTTCATTTCT-AACCTCCTCTACTTTTCTA-TCCACCTTCTTTCCAAGGACTTCCACTCCCAGTAATGACATCT-------------TACAGCTCTGTGGG-------------------------------------------AA-TTTTGTGTCATGATTATATTCTTACTCTATCCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            216769 182 +   1154217 CGGAACTTCTCCGTATTCAT---AACACT--CCCGACAT-TGCTTGGATTGAGCTTGTTTTCTTATCTTCATTTCT-AACCTTCTCTATTTTTCTA-TCCACCTTCTTTCCAAGGACTTCCACTCCCAATAATGACACCT-------------TACAGCTCTGTGGG-------------------------------------------GA-TTTTGTATCATGATCATATTCTTACTCTATCCTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14036679 182 +  15232693 CTGAACTTCTCCGTATTCAT---AACACT--CCTGATAC-TGCTTGGATTGACCTTGTTATCTTATCTTTATTTCT-AACCTCCTCTATTTTCCTA-TCCACCTTCTTTCCAAGGACTTCCACTCCCAGTAATGACACCT-------------TACAGCTCTGTGGG-------------------------------------------GA-TCTGGTATCATGATCATATTCTTACTCTATCCTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      286019 182 +    446445 CTGAACTTCTCCATATTCAT---AACACT--CTTCATAT-TGCTTGGATTGACCTTGTTTTCTTGTCTTCATTTCT-AACCTCCTCTATTTTTCTA-TCCACCTTCTTTCCAAGGACTTCCACTCCCAATAATGACACCT-------------TACAGCTCTGTGGG-------------------------------------------GA-TTTTGTATcatgattatattcttactctatcctg
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      143847 185 +   1371726 CTGAATTTCTCCATATTCATAGCAAGAGT--CCTGATAT-CTCTCGGATTAATGTTGTTTTCTTATTCTCATTTCT-TATTTCCTCCACTTTTCTAGTCTACTTTCTTTCCAATCCCTT-CACTCCCAATAACAACGCCT-------------TACATCTAAGCAGG-------------------------------------------GA-TTTTGTGTCATGattatcttttcactctaccttt
i proCoq1.NW_012150019v1   I 114 C 0
s otoGar3.GL873550          15340469 182 -  18854210 CTGCCTTTCTCCATATCCGCAGCAAAAAC--CCTGACAT-CTATTGCGTTAA---TGTTTTCTTATTCTCATTTCT-TATCTCCTCTA-GTTTCTAGTCTACTTTCCTCCCAAGACCTTCCACTCCCAATAACGATGCCT-------------TATATCTAAATGGG-------------------------------------------GATTTTTGTGCCATGATTATATTTTCACTCT-TCTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70388916 230 -  72498081 CTGAATTTCTCCAAATTATTAGCAGGGCT--CCTGACTC-CTCTTGCATTAGTCT---TTTCTTGC---CATTTCC-TATCTACTCTATTTTA--G-TCACCCTTCTCTCCACAA--TGTCACTCCCATTACTGAAACCTATACCTAAATAGATTTACCTATTTAGGTATAGGTTTACCAAATAACCTAAAATTTAGGTTTACCAAAATAAA-TTTTGTGTCATGATTATATTCTCACACTA-CCTT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            494821 181 +    935526 CTGAATTTCTCTATATTTGTAGAAAGCTT--CCTAATATGCTATTGGAGTAAC-----TGAATTATTTTCATTTCT-TATCTCCACTATTTTCTAG-TCTCCCTTCTTTCCAAGACTCTCCATACCCAATAACAACACCT-------------TGTATCTAAATAAG-------------------------------------------GA-CTTTGTATAATGCTTATATTCTAACTCTATCCTT
i dasNov3.JH569424         C 0 I 274
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I

a score=309788.000000
s hg38.chr6_KI270758v1_alt     40826 31 +     76752 acaacgatactttaatgtgagccacccacat
s panTro5.chr6             142744150 31 - 175400573 acaacagtactttaatgtgagccacccacat
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892385 31 - 173848474 acaacgatactttaatgtgagccacccacat
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409914 31 +   2807050 ACAACCGTACTTTAATGTGAGCCACCCACAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702931 31 - 122973662 acagcggtactttaacgtgagccacccacat
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139333548 31 - 172585720 acaacggtactttaatgtgagtcatccacat
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500783 31 + 170955103 acaacggtactttaatgtgagtcatccacat
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207611 31 +    407600 ACAATGGTACTTTAATGTGAGTCATCCACAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       79543 31 +    463628 acaacggtactttaatgtgagtcatccacat
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657685 31 +  71996105 ACAACGGTGCTTTAATGTGAGCCATCCACAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80944 31 -    115496 acaatggtactttaatgtgagtcatccacat
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702591 31 -   1936607 acaacggtactttaatgtgagccatccacat
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138662822 31 - 171630274 ACACCAGCACTTTAATGTGAGCCAGGCACAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            216951 31 +   1154217 ACACCAGCACTTTAACGTGAGCCATGCACAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14036861 31 +  15232693 ACACCAGCACTTTAATGTGAGCCATGCACAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      286201 31 +    446445 acaccagcactttaacgtgagccatgcacat
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      144032 26 +   1371726 tatacaata-----atgtgagcagtgcacac
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15340651 30 -  18854210 TAAACAATATTTTCACGTgagcagtgcac-c
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70389146 31 -  72498081 TTAGGAACATTTTAATATGAATAGTGCATAT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e dasNov3.JH569424            495002 274 +    935526 I

a score=1955869.000000
s hg38.chr6_KI270758v1_alt     40857 150 +     76752 a------ctatccctgtg--------------------------------------taaaaactaagaaaattgagacccctggaaagaacagacttacccaaagtaaagcttgcccaaatgtatagcaaagctagaatgaaaatctcagtcagcctaaactcagggcTTCTTTTGTCGTCTAGTGGCTGAGGG
s panTro5.chr6             142744181 150 - 175400573 a------ctatccctgtg--------------------------------------taaaaactaagaaaattgagacccctgaaaaggacagacttacccaaagtaaagcttgcccaaatgtatagcaaagctagaatgaaaatctcagtcagcctaaactcAGGGCTTCTTTTGTCGTCTAGTGGCTGAGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892416 150 - 173848474 a------ctatccctgtg--------------------------------------taaaaactaagaaaattgagacccctggaaagaacagacttacccaaagtaaagcttgcccaaatgtatagcaaagctagaatgaaaatctcagtcagcctaaactcagggcTTCTTTTGTCGTCTAGTGGCTGAGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2409945 147 +   2807050 T------AAAAC---GTG--------------------------------------TAAAAACGAAGAAAATTGAGACCCCTGGAAAGAACAGACTTACCCAAAGTAAAGCTTGCCCAAATGTATAGCAAAGCTAGAATGAAAATCTCAGTCAGCCTAAACTCAGGGCTTCTTTTGTCGTCTAGTGGCTGAGGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45702962 150 - 122973662 a------ctatcactgtg--------------------------------------taaaaactaagaaaattgagacccctgaaaagaacagacttacccaaagtaaagcttgcccaaatgtatagcaaagctagaatgaaaatctcagtcagcctaaactcaggGCTTCTTTTGTCGTCTAGTGGCTGAGGG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139333579 150 - 172585720 a------ctattcctgtg--------------------------------------taaaaactaagaaaattgagacccctgaaaagaacagacttatccaaagtaaagcttgcccaaatgtatagcaaagctagaatgaaaatatcagtcagcctaaactcagggcTTCTTTTGTCGTCTAGGGGCTGAGGG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500814 149 + 170955103 a------ctatccctgtg--------------------------------------taaaaactaagaaaattgagacccctgaaaagaacagacttatccaaagtaaagcttgcccaaatgtatagcaaagctagaatgaaaatatcagtcagcctaaactcagggcTTC-TTTGTCGTCTAGGGGCTGAGGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207642 150 +    407600 A------CCATCCCTGTG--------------------------------------TAAAAACTAAGAAAATTGAGACCCCTGAAAAGAACAGACTTATCCAAAGTAAAGCTTGCCCAAATGTATAGCAAAGCTAGAATGAAAATATCAGTCAGCCTAAACTCAGGGCTTCTTTTGTGGTCTAGGGGCTGAGGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       79574 150 +    463628 a------ccatccctgtg--------------------------------------taaaaactaagaaaattgagacccctgaaaagaacagacttatccaaagtaaagcttgcccaaatgtatagcaaagctagaatgaaaatatcagtcagcctaaactcagggcTTCTTTTGTCGTCTAGGGGCTGAGGG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657716 150 +  71996105 A------CTATCCCTGTG--------------------------------------TAAAAACTAAGAAAATTGAGACCCCTGAAAAGAACAGACTTATCCAAAGTAAAGCTTGCCCAAATGTATAGCAAAGTTAGAATGAAAATATCAGTCAGCCTAAACTCAGGGCTTCTTTTGTGGTCTAGGGGCTGAGGG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       80975 149 -    115496 a------ccatccctgtg--------------------------------------taaaaactaagaaaattgagacccctgaaaagaacagacttatccaaagtaaagcttgcccaaatgtatagcaaagctagaatgaaaatatcagtcagcctaaactcagggcTTC-TTTGTCGTCTAGGGGCTGAGGG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702622 150 -   1936607 a------ctatccctgtg--------------------------------------taaaaactaagaaaattgagacccctgaaaagaacagacttatccaaagtaaagcttgcccaaatgtatagcaaagctagaaTGAAAATATCAGTCAGCCTAAACTCAGGGCTTCTTTTGTCGTCTAGGGGCTGAGCG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138662853 141 - 171630274 A------CTATCCCTGTG--------------------------------------CAAAAACTCAGAAAATTGAGACCCCTGAAAAGAACAGACTT------AGTAAAGCTTGCCCAAATGTATAGCAAAGCTAGAATGAAAATCTCAGTCAGCCTAAACTCGGGGCTTCTTTT---GCCTAGTGGCCGAGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            216982 147 +   1154217 A------CTCGCCCTGTG--------------------------------------CAAAAACTAAGAAAACTGAGACCCCTGAAAAGAACAGACTTATCCAAAGTAAAGCTTGCCCAAATGTATAGCAAAGCTAGAATGAAAATCTCAGTCAGCCTAAACTCAGGGCTTCTTTT---GTCCAGTGGCCGAGGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14036892 147 +  15232693 A------CTATCCCTGTG--------------------------------------CAAAAACTAAGAAAATTGAGACCCTTGAAAAGAACAGACTTATCCAAAGTAAAGCTTGCCCAAATGTATAGCAAAGCTAGAATGAAAATCTCAGTCAGCCTAAACTCAGGGCTTCTTTT---GTCTAGTGGTCGAGGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      286232 147 +    446445 a------ctatcccggtg--------------------------------------caaaaactaagaaaattgagacccctgaaaagaacagactaatccaaagtaaagcttgcccaaatgtatagcaaagctagaatgaaaatctcggtcagcgtaaacccagggcttctttc---GTCTAGTGGCTGAGGG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      144058 150 +   1371726 a------ttaccgctatg--------------------------------------ttaaaactaagaaaactgagaccccagaaatgaacggacttatccaaagtaaagcttgcccagatttgcagcaaatctagaatgaaaatgccaggcatcctaagctcaggcctccttttgccatctgcTGGCTGAGGG
i proCoq1.NW_012150019v1   C 0 I 81
s otoGar3.GL873550          15340681 150 -  18854210 a------ttatccctatg--------------------------------------ctgaaactaagaaaattgagaccccagaaatgaatggacttatccaaaataaaacttacccaaattcatagcgaatctagaattaaaatgccagtcttcctaagctcaagcctctttttgtcatctaccgtctgAAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70389177 150 -  72498081 ATTAGCCTTATccttatt--------------------------------------ttaaagctaaggaaattaaagccct----acaaataaacttattcaaagtaaagtttacctaaattcatagcaaaactagaattaaaatctcagatatcctaagctcAAGATTCCTTTTGTCA--TACTGTCTGAGGG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            495276 169 +    935526 A------CTACCCTTGTAAGAATACTTGAACATGAACAGTGCCTCTATGAAGCCATTTAAAGCCAAGGAAATTAAGATCCTCAAAGTGAACAGACATGTGCAAATCAAAGCTT---------------AAAACTAGAATTAAAAGCTCAAGCATCCTAAGCCCAGAGCTCCTGCTGCCAGC-ACTGCCTGA---
i dasNov3.JH569424         I 274 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I

a score=508334.000000
s hg38.chr6_KI270758v1_alt     41007  88 +     76752 AGTTATG-AATG---TGGGTCACAGGTGACCGCCGCATTTGAAGAAGA------GTCTGTAAGTG----AATC--GACTTG---CGGAACATC--------------CT-TGAAGCC---GACAG
s panTro5.chr6             142744331  88 - 175400573 AGTTATG-AATG---TGGGTCACAGGTGACCGCCGCATTTGAAGAACA------GTCTGTAAATG----AATC--GACTTG---CGGAACAGC--------------CT-TGAAGCC---GACAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892566  86 - 173848474 AGTTATG-AA-----TGGGTCACAGGTGACCGCCGCATTTGAAGAAGG------GTCTGTAAGTA----AATC--GACTTG---CGGAACAGC--------------CT-TGAAGCC---GACAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2410092  86 +   2807050 AGTTATG-AA-----TGGGTCACAGGTGACCGCCGCATTTGAAGAAGG------GTCTGTAAGTA----AATC--GACTTG---CGGAACACC--------------CT-TGAAGCC---GACAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45703112  92 - 122973662 AGTTATG-AATG---TGGGTCACAGGTGACCTCCGCATTTGAAGAAGG------ATCTGTAAGTGAATCAATC--GACTTG---CGGAACAGC--------------CT-TGAAGCC---GACAG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139333729  77 - 172585720 AGTTATG-AATG---TGGGTCACAGGGGACCGCCGCATTTGAAGAAGG-AAGG-GTCTGTAGGTG----AAT--------------------C--------------CA-TGAAGCC---GACAG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138500963  77 + 170955103 AGTTATG-AATG---TGGGTCACAGGGGTCCGCCGCATTTGAAGAAGG-AAGG-GTCTGTAGGTG----AAT--------------------C--------------CA-TGAAGCC---GACAG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207792  77 +    407600 AGTTATG-AATG---TGGGTCACAGGGGACCGCCGCATTTGAAGAAGG-AAGG-GTCTGTAAGTG----AAG--------------------C--------------CA-TGAAGCC---GACAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       79724  77 +    463628 AGTTAAG-CATG---TGGGTCACAGGGGACCGCCGCATTTGAAGAAGG-AAGG-GTCTGTAAGTG----AAG--------------------C--------------CA-TGAAGCC---GACAG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657866  78 +  71996105 AGTTATG-AATG---TGGGTCACAGGGGACCGCCGCATTTGAAGAAGGAAAGG-GTCTGTAACTG----AAT--------------------C--------------CA-CGAAGCC---GACAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       81124  77 -    115496 AGTTATG-AATG---TGGGTCACAGGGGACCGCCGCATTTGAAGAAGG-AAGG-GTCTGTAAGTG----AAT--------------------C--------------CA-TGAAGCC---GACGG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702772  77 -   1936607 AGTTATG-AATG---TGGGTCACAGGGGACCGCCGCATTTGAAGAAGG-AAGC-GTCTGCAAGTG----AAG--------------------C--------------CA-TGAAGCC---GACAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138662994  78 - 171630274 AGTTATA-AATG---TGGGCCGCAGGTGACCTCCGCATTGGAAGAAGT----------------G----AATC--CTCTTG---CAGAACAGC--------------CT-TGAAGCC---GACCG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            217129  78 +   1154217 AGTTATG-AATG---TGGGCCGCAGGGGACCGCCGCGTTTGAAGAAGT----------------G----AATC--GTCTCG---CAGAACATG--------------CC-TGAAGCC---GACCG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14037039  78 +  15232693 AGTTATG-AATG---TGGGCCACAGGGGACCGCCGCATTTGAAGAAGT----------------G----GATC--GTCTTG---CAGAATGGC--------------AT-TGAAGCA---GACGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      286379  78 +    446445 AGTTATG-AATG---TGGGCCACAGGTGACCGCCGCATTTGAAGAAGT----------------G----AATC--GTCTTG---CAGAACATC--------------CT-TGAAGCC---GACCG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15340831  97 -  18854210 AGTGGTG-ACTG---TGGGCCACACATGACAGCTGCTTCTGAACGAGG-AATC-ATC--CAAGTG----AGTC-AGGCCTGGGAAGAAAAGCC--------------CT-TGATGACCAAGACCG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70389327  86 -  72498081 AGTCATG-AATG---T--GTCATGCATGATAGCAGTATTTGGAGGAGG-AAAT--------AGTG----AATCAAGTCTTG---GGGAAAAGC--------------CAGTGAAGGC---CAAAT
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            495445 114 +    935526 AGTCATGCAATGAGCTGGGTCACCCACCACAGCAGCATCTGAACCAGG-AACCAACTTCTGAAGA----AAGG--CCCCTGGGAGAGGGCAGCGGCGCCCCATCCTGcc-tgacgcc---agggg
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      144208  81 +   1371726 I

a score=614311.000000
s hg38.chr6_KI270758v1_alt     41095  51 +     76752 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCAGATCCATGACTCCCCT
s panTro5.chr6             142744419  51 - 175400573 -------------------------------------TGAGCCTGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCCAATCCATGACTCCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892652  51 - 173848474 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCCGATCCATGACTCCCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2410178  51 +   2807050 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCAGATCCGTGACTCCCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45703204  51 - 122973662 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCCGATCCATGACTCCCCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139333806  51 - 172585720 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCCGATCCATGACTCCCCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138501040  51 + 170955103 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCCGATCCATGACTCCCCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207869  51 +    407600 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCCGATCCATGACTCCCCT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       79801  51 +    463628 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCCGATCCATGACTCCCCT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657944  51 +  71996105 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCCCATCCATGACTCCCCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       81201  51 -    115496 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCCGATCCATGACTCCCCT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702849  51 -   1936607 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCCGATCCATGACTCCCCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138663072  51 - 171630274 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCCCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCGGATCCATGACTCCCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            217207  50 +   1154217 -------------------------------------TGAGCCCGTCTCTGCTGC---------------CCGCTGGT-------------------------------------------------------------------------------------------------------------------------GG-CA-------GGCAGATCCCTGACTCCCCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14037117  51 +  15232693 -------------------------------------TGAGCCAGTCTCTGCTGC---------------CCCCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGTGCATCCATGACTCCCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      286457  51 +    446445 -------------------------------------TGAGCCTGTCTCTGCTGC---------------CCCCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------GGCGGATCCATGACTCCCCT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      144289  51 +   1371726 -------------------------------------TGAGCCTGTCTCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCA-------CGCAGATCCATGACTCCCCT
i proCoq1.NW_012150019v1   I 81 I 186
s otoGar3.GL873550          15340928  51 -  18854210 -------------------------------------TGGGTGTGTCGCTGCTGC---------------CCTCTGGT-------------------------------------------------------------------------------------------------------------------------GGCCG-------TGTAGATCCATGCCGCCCCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70389415  58 -  72498081 -------------------------------------TGAGCGTGTCTCTGCTGC---------------CCTCTAGT-------------------------------------------------------------------------------------------------------------------------GACCATGTATCTAGTAGATACATGATTCTTCT
i canFam3.chr12            I 2 I 3
s dasNov3.JH569424            495559 218 +    935526 agaggccggggccagggtctccctcagcgcctgcagaaggacacagccctgctgtcatcttgatttcggacccctggtctcctgaactctgagagaataaatttctgttattttaagccagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaCAAGCCCTTGAAGGCAGCAGGAAGCCGCTGCTGCGCCTGCGGGCCT-------TGCGGATCC----CTCCC--
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I

a score=1797905.000000
s hg38.chr6_KI270758v1_alt     41146 178 +     76752 CTCCTGTTCCTC-CTGCCCTCGCCGGATGCTTGTTTTTCCC-TCTCCTCAGTTCTAGCAGCTTATG---------CCTTGTTTTCCCGCTTCTCCTGGAGGTGGACTCTAGTCAGAATGGC--AGAGATTGTGACTC----CTTTTTTTCTCTCCCACACACCAACATCTTCCTGCACAAAA-TGGCCTCCCATAA
s panTro5.chr6             142744470 178 - 175400573 CTGCTGTTCCTC-CTGCCCTCGCCGGATGCTTGTTTTTCCC-TCTCCTCAGTTCTAGCAGCTTATG---------CCTTGTTTTCCCGCTTCTCCTGGAGGTGGACTCTAGTCAGAATGGC--AGAGATTGTGACTC----TTTTTTTTCTCTCCCACACACCAACATCTTCCTGCACAAAA-TGGCCTCCCATAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892703 178 - 173848474 CTCCTGTTCCTC-CTGCCCTCGCCGGATGCTTGTTTTTCCC-TCTCCTCAATTCTAGCAGCTTATG---------CCTTGTTTTCCTGCTTCTCCTGGAGGTGGACTCTAGTCAGAATGGC--AGAGATTGTGACTC----TTTTTTTTCTCTCCCACACACCAACATCTTCCTGCACAAAA-TGGCCTCCCATAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2410229 178 +   2807050 CTCCTGTTCCTC-CTGCCCTCGCCGGATGCTTGTTTTTCCC-TCTCCTCAGTTCTAGCAGCTTATG---------CCTTGTTTTCCCGCTTCTCCTGGAGGTGGACTCTAGTCAGAATGGC--AGAGATTGTGACTC----TTTTTTTTCTCTCCCACACACCAACATCTTCCTGCACAAAA-TGGCCTCCCATAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45703255 176 - 122973662 CTCCTGTTCCTC-CTGCCCTCGCCGGATGCTTGTTTTTCCC-TCTCCTCCGTTCTAGCAGTTTACG---------CCTTGTTTTCCCGCTTCTCCTGGATGTGGACTCTAGTCAGAATGGC--AGAGATTGTGACT------TTCTTTTCTCTCCCACACACCAACATCTTCCTGCACAAAA-TGGCCTCCCATAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139333857 178 - 172585720 CTCCTGTTCCTC-CTGCCCTCGCCGGGTGCTTGTTTTTCCC-TCTTCTCAGTTCTAGCAGCTTGTG---------CCTTGTTTTCCCGCTTCTCCTGGAGGTGGACTCTAGTCAGAATGGC--AGAGATTGTGACTC----TTTTTCTTCTCTCCCACACACCAACATCTTCCGGCACAAAA-TGGCCTCCCATAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138501091 178 + 170955103 CTCCTGTTCCTC-CTGCCCTCGCCGTGTGCTTGTTTTTCCC-TCTCCTCAGTTCTAGCAGCTTGTG---------CCTTGTTTTCCCGCTTCTCCTGGAGGTGGACTCTAGTCAGAATGGC--AGAGATTGTGACTC----TTTTTCTTCTCTCCCACACACCAACATCTTCCGGCACAAAA-TGGCCTCCCATAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      207920 174 +    407600 CTCCTGTTCA-----GCCCTCGCCGGGTGCTTGTTTTTCCC-TCTCCTCAGTTCTAGCAGCTTGTG---------CCTTGTTTTCCCGCTTCTCCTGGAGGTGGACTGTAGTCAGAATGGC--AGAGATTGTGACTC----TTTTTCTTCTCTCCCGCACACCAACATCTTCCGGCACAAAA-TGGCCTCCCATAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       79852 187 +    463628 CTCCTGTTCCTC-CTGCCCAGGCTGGGTGCTTGTTTTTCCC-TCTCCTCAGTTCTAGCAGCTTATGGAGGTGGACTCTAGTTTTCCCGCTTCTCCTGGAGGTGGACTCTAGTCAGAATGGC--AGAGATTGTGACTT----TTTTTCTTCTCTCCCGCACACCAACATCTTCCGGCACAAAA-TGGCCTCCCATAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39657995 178 +  71996105 CTCCTGTTCCTC-CTGCCCTCGCTGGGTGCTTGTTTTTCTC-TCTCCTCAGTTCTAGCAGCTTGTC---------CCTTGTTTTCCCGCTTCTCCTGGGAATGGACTCTAGTCAGAATGGC--AGAGATTGTGACTC----TTTTTCTTCTCTCCCACACACCAACATCTTCCGGCACAAAA-TGGCCTCCCATAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       81252 175 -    115496 CTCCTGTTCCTC-CTGCCCTCGCTGGGTGCTTGTTTTTCCC-T---CTCAGTTCTAGCAGCTTGTG---------CCTTGTTTTCCCGCTTCTCCTGGAGGTGGACTCTAGTCAGAATGGC--AGAGATTGTGACTC----TTTTTCTTCTCTTCCGCACACCAACATCTTCCGGCACAAAA-TGGCCTCCCATAA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      702900 174 -   1936607 CTCCTGTTCT-----GCTCTCGCCGGGTGCTTGTTTTTCCC-TCTCCTCAGTTCTAGCAGCTTGTG---------CCTTGTTTTCCCGCTTCTGCTGGAGGTGGACTCTAGTCAGAATGGC--AGAGATTGTGACTC----TTTTTCTTCTCTCCCACACACCAACATCTTCCGGCACAAAA-TGGCCTCCCATAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138663123 178 - 171630274 CTCCTGTTGCTC-CTGCGCTCTCCGG-TGCTTGTTCTTCCC-TCTCCTCAATTCTAGCAGCATAAG---------CTTTGTTTTCCCGCTTCTCCCAGAGGCGGACTCTAGTCAGAATGGCAAAGAGACCGTGACCC-----TTTTTTTCTTTCCCACACACCAACATCTTCCTGCACAAAA-CACCCTCCCATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            217257 175 +   1154217 CCCC----GCTG-CTCTGCTCTCCGGATGCTTGCTCTTCCC-TCTCCTCACTTCTAGCAGCATCAG---------CTTCGTTTTCCCGCGTCTCCCAGAGGCGGACTCTAGTCAGAATGGCAAAGAGATCGTGACCC-----TTTTCTTCTTTCCCACTCACCAACATCTTCCTGCACAAAA-CGGCCTCCCGTAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14037168 178 +  15232693 CTCCTGTGGCT--CTGCGCTCTCCGGATGCTTGTTCTTCCC-TCTCCTCAGTTCTAGCAGCCTAAG---------CTTTGTTTCCCCGCGTCTCCCAGAGGTGGACTCTAGTCAGAATGGCAAAGAGATCGTGACCC-----TTTTTTTCTTTCCCACACACCAACATCTTCCTGCACAAAA-CGGCCTCCCATAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      286508 184 +    446445 CTCCTGTTGCTC-CTGCGCTCTCCAGATGCTTGTTCTTCCC-TCGCCTCAATTCTAGCAGCATAAG---------CTTCGTTGTCCCGCTTCTCCCAGAGGTGGACTCTAGTCAGAATGGCAAAGAGATCGTGACTCCTTTTTTTTTTCCTTTCCCACACACCAACATCTTCCTGCACAAAA-TAGCCTCGCATAA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15340979 153 -  18854210 -TCCCGTTA---------------------TTTTCCTGTCT-TCTCCTCAG----GGCTGCATTTG---------TCTTGCTGTCCTGCTTCTCCCAGAAGTGGACTCTAGTCAGAATGGCAAAGAGATTGTGACTC------TTTTTTCTCTCCTATATATCCATATGTCCCTATGCAAAA-TGGCCATCTATAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70389476 113 -  72498081 CTTCTGTTCTGT-CTTCTCTC---AGATCCTTGTTCGGCC------------------------TG---------CCTGGTCTCC----------------------------------GC--A------GCATCTC----CTGCCTTTTTCTCCCACGTGTCAACATGTCCCTACAAAAAACCGGACACCTGTAA
i canFam3.chr12            I 3 C 0
s dasNov3.JH569424            495777 173 +    935526 CTCCGGCTCCCCTCGGCCTGCTCCCAACCCTTGTTTTTCGCGTCTCCTCAGGGCTAAGACCCTTTG-----------TCGTTCTCCCGCCCCTCC-AGACTGGGACCCTAATCAGAACGGC--ATAGATAGTGGCTC-------TTTTTCTCTCCAACAT-CCAACATGTCCCTACGCAAAA-CGGTCACCCATAA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      144340 186 +   1371726 I

a score=331231.000000
s hg38.chr6_KI270758v1_alt     41324 28 +     76752 TATGTAGCATAATTTAGGACACAGT-----TCT
s panTro5.chr6             142744648 28 - 175400573 TAGGTAGCATAATTTAGGACACAGT-----TCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892881 28 - 173848474 TATGTAGCATAATTTAGGACACAGT-----TCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2410407 28 +   2807050 TATGTAGCATAATTTAGGACACAGT-----TCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45703431 28 - 122973662 TAGGTAGCATAATTTAGGACACAGT-----TCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139334035 33 - 172585720 TATGTAGCATAATTTAGGACACAGTTCTCATCT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138501269 33 + 170955103 TATGTAGCATAATTTAGGACACAGTTCTCATCT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      208094 33 +    407600 CATGTAGCATAATTTAGGACACAGTTCTTATCT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       80039 33 +    463628 CGTGTAGCATAATTTAGGACACAGTTCTCATCT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39658173 33 +  71996105 TATGTAGCATAATTTAGGACACAGTTCTTATCT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       81427 33 -    115496 TATGTAGCATAATTTAGGACACAGTTCTTATCT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      703074 33 -   1936607 TATGTAGCATAATTTAGGACACAGTTCTTATCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138663301 33 - 171630274 CATGTAGCATAAATGAGAGTACAGTTCTTATCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            217432 33 +   1154217 CATGTAGCCTAGTTGAGGATACAGTTCTTATCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14037346 33 +  15232693 CATGCAGCATAATTGAGGATATAGCTCTTATCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      286692 33 +    446445 CATGTAGCATAACTGAGGATACAGCTCTTATCT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      144526 28 +   1371726 TATGTAGCATAGTTTAGGACACAGTTCT-----
i proCoq1.NW_012150019v1   I 186 I 385
s otoGar3.GL873550          15341132 28 -  18854210 TGCATAGCATAATTTAGGGCACAGTTTC-----
i otoGar3.GL873550         C 0 I 5
s canFam3.chr12             70389589 28 -  72498081 TTCATAGCATAATTCAGGACAGAGTTCT-----
i canFam3.chr12            C 0 I 5
s dasNov3.JH569424            495950 28 +    935526 GACACAGCATAACTGAGGACACGGTTCT-----
i dasNov3.JH569424         C 0 I 5
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I

a score=2933756.000000
s hg38.chr6_KI270758v1_alt     41352 279 +     76752 CAGCACAGGCAGACC------TCTGAGAAAGTGTATGCAGATGATTTGTGAGAACACACACACGCGAGTGTAAACGGAGCTTCTTTACGCGGTGAGTTGGCGCTGATGTGACTGACCATA---AAAAATTCAAAT-------------------------AATTCCAGCATTTGGTACCATAGAGATGATACTACAGAATGCATGCAATGAGCGGCATCTTT-----Tcaca-c-----attcaggtgt-ataaagtaaa-tttctatattttcctattacggattttaatttgtatgccaagcattattatg------------------------------------------------tcttctgacagag
s panTro5.chr6             142744676 279 - 175400573 CAGCACAGGCAGACC------TCTGAGAAAGTGTATGCAGATGATTTGTGAGAACACACACACGCGAGTGTAAACAGAGCTTCTTTACGCGGTGAGTTGGCGCTGATGTGACTGACCATA---AAAAATTCAAAT-------------------------AATTCCAGCATTTGGTACCATAGAGATGATACTACAGAATGCATGCAATGAGCGGCATCTTT-----Tcaca-c-----attcagatgt-ataaagtaaa-tttctgtattttcctattacggattttaatttgtatgcaaagcattattatg------------------------------------------------tcttctgacagag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140892909 273 - 173848474 CAGCACAGGCAGACC------TCTGAGAAAGTGTATGCAGATGATTTGTGAGAACACACACACGCGAGTGTAAACAGAGCTTCTTTACGCGGTGAGTTGGCGCTGATGTGACTGACCAT----AAAAATTCAAAT-------------------------AATTCCAGCATTTGGTACCATAGAGATGATACTACAGAATGCATGCAATGAGCGGCATCTTT-----Tcaca-c-----attcaggtgt-a-----taaa-tttctatattttcctattacggattttaatttgtatgccaagcattagtatg------------------------------------------------acttctgacagag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2410435 279 +   2807050 CAGCACAGGCAGACC------TCTGAGAAAGTGTATGCAGATGATTTGTAAGAACACACACACGCGAGTGTAAACAGAGCTTCTTTACGCGGTGAGTTGGTGCTGATGTGACTGACCATA---AAAAATTCAAAT-------------------------AATTCCAGCATTTGGTACCATAGAGATGATACTACAGAATGCATGCAATGAGCGGCATCTTT-----Tcaca-c-----attcaggtgt-ataaagtaaa-tttctatattttcctattacggattttaatttgtatgccaagcattattatg------------------------------------------------tcttctgacagag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45703459 281 - 122973662 TAGCACAGGCAGACC------TCTGAGAAAGTGTATGCAGATGATTTGTGAGAACACACACACACAAGTGTAAACAGAGCTTCTTTACGCGGTGAGTTGGCGCTGATGTGACTGACCATAAACAAAAATTCAAAT-------------------------AATTCCAGCATTTGGTACC-TAGAGATGATACTACAGAATGCATGCAATGAGCGGCATCTTT-----Tcaca-c-----attcaggtgt-ataaagtaaa-tttctatattttcctattacggattttaatttgtatgccaagcaccattatg------------------------------------------------tcttctgacagag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139334068 282 - 172585720 CAGCACAGGCAGACC------TCCGAGAAAGTGTATGCAGATGAGTTGTGAGAAAACACGCACACGAGTGTAAACAGAGCTTCTTGACGCGGTGAGTTGGCGCTGACGTGACGGACCATAAACAAAAAATCAAAT-------------------------AATTCCAGCATTTGGTGCCATAGAGATGATACTACAGAATGCATGCAATGAGCAGCATCTTT-----Tcaca-c-----attccggtgt-ataaagtaaa-tttctatgttttcctattacggattttaatttgcatgccaaacactattatg------------------------------------------------tcttctgacagag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138501302 282 + 170955103 CAGCACAGGCAGACC------TCCGAGAAAGTGTATGCAGATGAGTTGTGAGAAAACACGCACACGAGTGTAAACAGAGCTTCTTGACGCGGTGAGTTGGCGCTGACGTGACTGACCATAAACAAAAAATCAAAT-------------------------AATTCCAGCATTTGGTGCCATAGAGATGATACTACAGAATGCATGCAATGAGCGGCATCTTT-----Tcaca-c-----attccggtgt-ataaagtaaa-tttctatgttttcctattacggattttaatttgcatgccaagcactattatg------------------------------------------------tcttctgacagag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      208127 282 +    407600 CAGCACAGGCAGACC------TCCGAGAAAGTGTATGCAGATGAGTTGTGAGAAAACACGCACACGAGTGTAAAGAGAGCTTCTTGACGCGGTGAGTTGGCGCTGACGTGACTGACCATAAACAAAAAATCAAAT-------------------------AATTCCAGCATTTGGTGCCATAGAGATGATACTACAGAATGCATGCAATGAGCGGCATCTTT-----TCACA-C-----ATTCCGGTGT-ATAAAGTAAA-TTTCTATGTTTTCCTATTACGGATTTTAATTTGCATGCCAAGCACTATTATG------------------------------------------------TCTTCTGACAGAG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       80072 281 +    463628 CAGCACAGGCAGACC------TCCGAGAAAGTGTATGCAGATGAGTTGTGAGAAAACACGCACACGAGTGTAAACAGAGCTTCTTGACGCGGTGAGTTGGCGCTGACGTGACTGACCATAAACAAAAATTCAAAT-------------------------AATTCCAGCATTTGGTGCCATAGAGATGATACTACAGAATACATGCAATGAGCAGCATCTTT-----Tcaca-c-----attcaggtgt-ataaatt-aa-tttctgtgttttcctattacggattttaatttgcatgccaagcactattaca------------------------------------------------tcttctgacagag
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39658206 282 +  71996105 CAGCACAGGCAGACC------TCCGAGAAAGTGTATGCAGATGAGTTGTGAGAAAACACGCACACGAGTGTAAACAGAGCTTCTTGACGCGGTGAGTTGGCGCTGATGTGACGGACCATAAACAAAAATTCAAAT-------------------------AATTCCAGCATTTGGTGCCATAGAGATGATACCACAGAATGCATGCAATGAGCAGCATCTTT-----TCACA-C-----ATTCCGGTGT-ATAAAGTAAA-TTTCTATGTTTTCCTATCACGGATTTTAATTTGTATGCCAAGCACGATTATG------------------------------------------------TCTTCTGACAGAG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       81460 282 -    115496 CAGCACAGGCAGACC------TCCGAGAAAGTGTATGCAGATGAGTTGTGAGAAAACACGCACACGAGTGTAAACAGAGCTTCTTGACGCGGTGAGTTGGCGCTGACGTGACTGACCATAAACAAAAAATCAAAT-------------------------AATTCCAGCATTTGGTGCCATAGAGATGATACTACAGAATGCATGCAATGAGCGGCATCTTT-----TCACA-C-----ATTCCGGTGT-ATAAAGTAAA-TTTCTATGTTTTTCTAGTACAGATTTTAATTTGCATGCCAAGCACTATTATG------------------------------------------------TCTTCTGACAGAG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      703107 281 -   1936607 CAGCACAGGCAGACT------TCTGAGAAAGTGTATGCTGATGAGTTGTGAGAAAACACGCACACGGGTGTAAACAGAGCTTTTTGACGCGGTGAGTTGGCGCTGATGTGACTGACCATAAACAAAAATTCAAAT-------------------------AATTCCAGCATTTGGTGCCATAGAGATGATACTACAGAATGCATGCAATGAGCGGCATCATT-----Tcaca-c-----attgaggtat-ataaatt-aa-tttctatgttttcctattacggattttaatttgcatgccaagcactgttatg------------------------------------------------tcttctgacagag
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138663334 328 - 171630274 CGGCGCAGGTGGACC------TCTGAGAAAGTGTATGCAGATGATGTGCAAGAAAACACGCACACGAGTGTAAACAGAGTTTCTTTACGCGGTCAGTTGGCGCTGGTGTGACTGTTCATTAA-AAAAATTCAAAT-------------------------AATTCCAGCACTGGGTACCACAGAGATGATACTACAGAAAGCATGCAATGGGTGGGATC-TT-----TCACA-C-----ATTCAGGTGT-ATAAAGTAAA-TTTCTGTATTTTCCCATTACGGATTCTAATTTTTATGCCAAGCCCTATTATGTGTGAAATAATAGTGTGAATTTATTATTTATTACCCGATGAACTCCTCTATTATAACAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            217465 280 +   1154217 CAGCACAGGTGGACC------TCTGAGAAAGTGCATGCAGATGATTTGCGAG-AAACACGCACACGAGTGTAAACAGAGCTTCTTTACGTGGTCAGATGGCGCTGGTGTGACTGATCATTTT-AAAAATTCAAAT-------------------------AATTCCAGCACTGGGTACCATAGAGATGATACTACAGAAGGCATGCAATGGGTGGGATCTTT-----Tcaca-c-----attcaggtgt-ataaagtaaa-tttctgcattttcctattacggattctaatttttatgccaagcactattgtg------------------------------------------------tcttataacagag
i saiBol1.JH378315         C 0 I 227
s cebCap1.NW_016107339v1    14037379 274 +  15232693 CAGCACAGGTGGACC------TCTGAGAAAGTATATGCAGATTATTTGCAAGGAAACACGCACTTGAGTGTGAACAGGGCTTCTTTACGTGGTCAGTTGGCGCTGGTGTGACTGATCATTAA-AAAAATTTAAAT-------------------------AATTCCAGCACTGGGTACCACAGAGATGATACTACAGAAAGCATGCAATGGGTGGGATTTTT-----TGACA-C-----GTTCAGATGT-GTAAAGTAAA-TTTCTGCATTTTCCTATTACAGATTCTAATTTTTATGCCAAGCCCTATTATG------------------------------------------------T-------CAGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      286725 328 +    446445 CAGCACAGGTGGACC------TCTGAGAAAGTGTATGCAGATGATTTGCGAGAAAACACGCACATGAGTGTAAACAGAGCTTCTTTACGCGGTCAGTTGGCGCTGCTGTGACTGACCATTAA-AAAACTTCAAAT-------------------------AATTCCAGCACTGGGTACCACAGTGATGATACTACAGAAAGCATGCAAT-GGTGGGATCTTT-----TCACA-C-----ATTCAGGTGT-ATAAAGTAAA-TTTCTGCATTTTCCTATTACGGATTCTAATTTTTATGCCAAGCACTATTATGTGTGAAATAATAGTGTGAATTTATTATTTATTACCCGATGAACTCCTCTATTATAACAGAG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15341165 300 -  18854210 CAGCTCAAGTGGACC------TCTGAGGAAGTGAATGTAGGGGGTCTGTGAGAAAAGGTGCACAAGAGTTCAAGCAGAGCTTCT--GCACAGTCAGTTGGTGCTTAGGTGACTGATCACAAGCAAAAGTGCAAAGGTGGATACT-AAGACTCCT--AGAAGAATCCAACACTGTGTATC-TCAAGATGAT---ACAGAATGTGTGTAACAGATAGTATATTT-----TCACACC-----ATTGAGAGGTGAAAAAATAAA-CTTCTGTGTTTTTCTATTAATTATTCTAATGGTTATGCCGGATGCTAGTATG------------------------------------------------TCTTATAGCAGAG
i otoGar3.GL873550         I 5 C 0
s canFam3.chr12             70389622 302 -  72498081 CCAAACTGGAAGACC------T-TGAGAAAGTATATGTAAGGGCTTTTTGAGAAGAGATGTACAAAAATTTAAAT-GAGCTTCCTTAAGTGGGCAGTTGCTACTACTGTGACTGACCATAAA-TAAAATGCAAAGGTAGGTACTAAAGATTTCTG-GGAGAATTCCAGCATCCTATATAATTGAAATGAT---ATGGAATATGTGCAATGGGTAGAATagtt-----tcaca-ccacaaagttaagtgt-aaaaaat----tttctgtattttcctattactgatcctaatttttatgtcaagcgctataatg------------------------------------------------ccttttggcagag
i canFam3.chr12            I 5 C 0
s dasNov3.JH569424            495983 283 +    935526 CAAAACTGGTAGACCAGGGTGTATGTAAAAGTTTTTGTGCTTTTTTTTTAA-------TGCACAAAAGTTTAAACAGA--TTCTTTAAGGGGTCAGTTGGTGCTAATATGTTTAATCATAAACACAAATGCAAATGTGGGTACTAAGAGCCCGGGTAG--AATTCCAACAGTGCATCTCATCAGAATGGC---ACAGCATCTGTGCAGGGGGCCGTACAtttgcaagccaca-a-----aattgggcgt-gaaaacaaaagtgtctgtattctcctattactgat-ctaatt---------------------------------------------------------------------tcctatagcagtg
i dasNov3.JH569424         I 5 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      144554 385 +   1371726 I

a score=844525.000000
s hg38.chr6_KI270758v1_alt     41631 85 +     76752 aagttcatc---tggtaatttccagataaattcagtGGCT------TTCAC-ACAAT---TAATTTAATAGCAGCCTCTTCTTCAC--CCGCCGTGT---GAT
s panTro5.chr6             142744955 85 - 175400573 gagttcacc---tggtaatttccagataaattcagtGGCT------TTCAC-ACAAT---TAATTTAATAGCAGCCTCTCCTCCAC--CCGCCGTGT---GAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140893182 85 - 173848474 gagttcatc---tggtaatttccggataaattcagtGGCT------TTCAC-ACAAT---TAATTTAATAGCAGCCTCTCCTTCAC--CCGCCGTGT---GAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2410714 85 +   2807050 gagttcatc---tggtaatttccagataaattcagtGGCT------TTCAC-ACAAT---TAATTTAATAGCAGCCTCTCCTTCAC--CCGCCGTGT---GAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45703740 70 - 122973662 gagttcatc---tggtaatttccagataaattcagtGGCT------TTCAC-ACAAT---TAATTTAATAGCA-----------------GCCGTGT---GAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139334350 85 - 172585720 gagttcatc---tggtaatttccagataaattcagtGGCT------TTCAC-ACAAT---TAGTTTAATAGCAGCCTCTCCTTCAT--CCACCGTGT---GAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138501584 85 + 170955103 gagttcatc---tggtaatttccagataaattcagtgact------tTCAC-ACAAT---TAGTTTAATAGCAGCCTCTCCTTCGC--CCACCCTGT---GAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      208409 85 +    407600 GAGTTCATC---TGGTAATTTCCAGATAAATTCGGTGGCT------TTCAC-ACAAT---TAGTTTAATAGCAGCCTCTCCTTCGC--CCACCCTGT---GAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       80353 85 +    463628 gagttcatc---tggtaatttccagataaattcagtGACT------TTCAC-ACAAT---TAGTTTAATAGCAGCCTCTCCTTCAC--CCACCGTGT---GAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39658488 85 +  71996105 GAGTTCATC---TGGTAATTTCCAGATAAATTCGGTGGCT------TTCAC-ACAAT---TAGTTTAATAGCAGCCTCTCCTTCAT--CCACCGTGT---GAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       81742 85 -    115496 GAGTTCATC---TGGTAATTTCCAGATAAATTCGGTGGCT------TTCAC-ACAAT---TAGTTTAATAGCAGCCTCTCCTTCAC--CCACCGTGT---GAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      703388 85 -   1936607 gagttcatc---tggtaatttccagataaattcagtGCCT------TTCAC-ACAAT---TAGTTTAATAGCAGCCTCTCCTTCAC--CCACCCTGT---GAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138663662 76 - 171630274 ------------GAGTAATTTTCAGATAAATTCGCTGGCT------TTCAC-ACAGT---TAACTTAAAAACAGCCTCTCCCTCAC--CCGCCGTGT---GAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            217972 85 +   1154217 aaaTTCATC---CGGTAATTTCCAGCTAAATTCGCTGGCT------TTCAC-ACAAT---TAACTTAAAAACAGCCTCTCCCTCTC--CCACCCTGT---GAT
i saiBol1.JH378315         I 227 C 0
s cebCap1.NW_016107339v1    14037653 77 +  15232693 GAGTTCATC---TGGTAATTTCCAGATAAATTCGCTGGCT------TTCAC-ACAAT---TAACTTAAAAACAGCCTCTCTCTCTC--CCAC-----------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      287053 85 +    446445 GAGTTCATC---CGGTAATTTCCAGATAAATTGGCTGGCT------TTCAC-ACAAT---TAACTTAAAAACAGCCTCTCCCTCTC--CCACCGTGT---GAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15341465 90 -  18854210 GAGTTTATC---TGGGAATTTCCAGATGAATTCAGTGGCT------TTCAT-ACAGT---TAATTTAAAAACACTTCCCCCACCACTGCCACCCTGCCCAGAG
i otoGar3.GL873550         C 0 I 4
s canFam3.chr12             70389924 81 -  72498081 gaattaagc---tagtaattgctgaggaaagtcagtggca------ttcaTAACAATTAATAATTTAAAAACATCCCT----------CTGCCTAGG---GTT
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            496266 87 +    935526 -agctaatctagtggtaatttcctgataaactccgtggcttcaggattttc-acagt---ta-cctgttgaaacctcCCCCCGGGG--GCGTCCT--------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      144554 385 +   1371726 I

a score=4675316.000000
s hg38.chr6_KI270758v1_alt     41716 410 +     76752 TTCTAAGTTCTGAGGTGGGAGGTGGTGCAGGGCTGGTGTAGAAGTCTCTCCTCACATTTGCATCATCAGCTCCCACAATATGTCACTATCCCATCGTGTTT-CC-----------------------TGGT--------CGTCACTGTCCTTCCCACAGTGGTGACGATCACTGTTATGTCCTTGATGCCACTCTCCTCTTGCTGGAACATTCCATCCCAGCATTTTAGGCAGCAAACTTTCATCCCACTGTTGGAGCCTTCCAGAGTCTGCCACTTCTTGCCTTGGAGAACTTTTCCTTTGCTGC--------CACTCT---------------GAGAG-GGACATCTGTGGGCATCG--CTACCATTCTGGGAACCGGAGGTGAAGTGGGGTTCATTCCCCTCTACTCCAATTGAGAGAGAACCAGGGTAAAGAGACCCTCCTATCCTCGTCCATgtttaatt--gtt
s panTro5.chr6             142745040 412 - 175400573 TTCTAAGTTCTGAGGTGGGAGGCGGTGCAGGGCTGGTGTAGAAGTCTCTCCTCACATTTGCATCATCAGCTCCGACAATATGTCACTATCCCGTCGTGTTT-CC-----------------------TGGT--------CGTCACTGTCCTTCCCACAGAGGTGACGATCACTGTTATGTCCTTGATGCCACTCTCCTCTTGCTGGAACATTCCATCCCAGCATTTTAGGCAGCAAACCTTCATCCCACTGTTGGAGCCTTCCAGAGTCTGCCACTTCTTGCCTTGGGGAACTTTTCCTTTGCTGC--------CACTCT---------------GAGAG-GGACATCTGTGGGCATCG--CTACCATTCTGGGAACCGGAGGTGAAGTGGGGTTCATTCCCCTCTACTGCAATTGAGAGAGAACCAGGGTAAAGAGACCCTCCTATCcccatccatgtttaattatgtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140893267 412 - 173848474 TTCTAAGTTCTGAGGTGGGAGGTGGTGCAGGGCTGGTGTAGAAGTCTCTCCTCACATTTGCATCATCAGCTCCCACAATATGTCACTATCCCGTCGTGTTT-CC-----------------------TGGT--------CGTCACTGTCCTTCCCACAGTGGTGACGATCACTGTTATGTCCTTGATGCCACTCTCCTCTTGCTGGAACATTCCATCCCAGCATTTTAGGCAGCAAACTTTCATCCCACTGTTCGAGCATTCCAGAGTCTGCCACTTCTTGCCTTGGGGAACTTTTCCTTTGCTGC--------CACTCT---------------GAGAG-GGACATCTGTGGGCATCG--CTACCATTCTGGGAACCAGAGGTGAAGTGGGGTTCATTCCCCTCTACTGCAATTGAGAGAGAACCAGGGTAAAAAGACCCTCCTATCCCCATCCATGTTTAATTATGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2410799 412 +   2807050 TTCTAAGTTCTGAGGTGGGAGGCGGCGCAGGGCTGGTGTAGAAGTCTCTCCTCACATTTGCATCATCAGCTCCCACAATATGTCACTATCCCGTCGTGTTT-CC-----------------------TGGT--------CGTCACTGTCCTTCCCACAGTGGTGACGATCACTGTTATGTCCTTGATGCCACTCTCCTCTTGCTGGAACATTCCATCCCAGCATTTTAGGCAGCAAACTTTCATCCCACTGTTGGAGCCTTCCAGAGTCTGTCACTTCTTGCCTTGGGGAACTTTTCCTTTGCTGC--------CACTCT---------------GAGAG-GTACATCTGTGGGCATCG--CTACCATTCTGGGAACCGGAGGTGAAGTGGGGTTCATTCCCCTCTACTGCAATTGAGAGAAAACCAGGGTAAAGAGACCCTCCTATCCTCATCCATGTTTAATTATGTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45703810 412 - 122973662 TTCTAAGTTCTGAGGGGGGAGGTGGTGCAGGGCTGGTGTAAAAGTCTCTCCTCATATTTGCATCATCAGCTCCCACAATATGTCACTATCCCGTCGTGTTT-CC-----------------------TGGT--------CGTCATTGTCCTTCCCACAGTGGTGACAATCACTGTTATGTCCTTGATGCCACTCTCCTCTTGCTGGAACATTCCATGCCAGCATTTTAGGCAGCAAACTTTCATCCCACTGTTGGAAACTTCCAGAGTCTGCCACTTCTTGCCTTGGAGAACTTTTCCTTTGCTGC--------TACTCT---------------GAGAG-GGACGTCTGTGGGCATCG--CTACCATTCTGGGAGCCAGAGGTGAAGTGGGGTTCATTCCCCTCTACTCTAATTGAGAGAGAACCAGGGTAAAGAGACCCTCCTATTCTCATCCACGTTTAATTATGTT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139334435 412 - 172585720 TTCTAAGTTCTGAGGTGGGAGGTGGTGCAGGGCTGGTGTAAAAGTCTCTCCTCATATTTGCACCATCAGCTCCCATAATATGTCACTATCCCGTCGTGTTT-CC-----------------------TGAT--------CGTCACTGTCCTTCCCACAGTGGTGATGATCATTGTTATGTCCTTGATGCCACTCTCCTCTTGCTGGAACATTCCATGCCAGCATTTTAGGCAGCAAACTTTCATCCCACGGTTGGAGCCTTCCAGAGTCTGCCACTTCTTGCCTTGGGGAACTTTTCCTTTGCTGC--------TACTCT---------------GAGAG-GGACGTCTGTGGGCATCG--CTACCATTCTGGGAACCAGAGGTGAAGTGGGGTACGTTCCCCTCTACTCTAATTGAGAGAGAACCAGGGTAAAGAGACCCTCCTATCctcacccatgtttaattatgtt
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138501669 412 + 170955103 TTCTAAGTTCTGAGGTGGGAGGTGGTGCAGGGCTGGTGTAAAAGTCTCTCCTCATATTTACATCATCAGCTTCCATAATATGTCACTATCCCGTCGTGTTT-CC-----------------------TGGT--------CGTCACTGTCCTTCCCACAGTGGTGATGATCATTGTTATGTCCTTGATGCCACTCTCCTCTTGCTGGAACATTCCATGCCAGCATTTTAGGCCGCAAACTTTCATCTCACTATTGGAGCCTTCCAGAGTCTGCCACATCTTGCCTTGGGGAACTTTTCCTTTGCTGC--------TACTCT---------------GAGAG-GGACGTCTATGGGCATCA--ATACCATTCTGGAAACCAGAGGTGAAGTGGGGTTCATTCCCCTCTACTCTAATTGAGAGAGAACCAGGGTAAAGAGACCCTCCTATCCTCACCCATGTTTAATTATGTT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      208494 400 +    407600 TTCTAAGTTCTGAGGTGGGAGGTGGTGCAGGGCTGGTGTAAAAGTCTCTCCTCATATTTGCATCATCAACTCCCATAATATGTCACTATCCTGTCGTGTTT-CC-----------------------TGGT--------CGTCACTGTTCTTCCCACAGTG------------GTTATGTCCTTGATGCCACTCTCCTCTTGCTGGAACATTCCATGCCAGCATTTTAGGCAGCAAACTTTCATCTCACTATTGGAGCCTTCCAGAGTCTGCCACATCTTGCCTTGGGGAACTTTTCCTTTGCTGC--------TACTCT---------------GAGAG-GGACGTCTATGGGCATCA--ATACCATTCTGGGAACCAGAGGTGAAGTGGGGTTCATTCCCCTCTACTCTAATTGAGAGAGAACCAGGGTAAAGAGACCCTCCTATCCTCACCCATGTTTAATTATGTT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       80438 412 +    463628 TTCTAAGTTCTGAGGTGGGAGGTGGTGCAAGGCTGGTGTAAAAGTCTCTCCTCATATTTGCATCATCAGCTCCCATAATATGTCACTATCCCGTCGTGTTT-CC-----------------------TGGT--------CGTCACTGTCCTTCCCACAGTGGTGATGATCATTGTTATGTCCTTGATGCCACTCTCCCCTTGCTGGAACATTCCATGCCAGCATTTTAGGCAGCAAACTTTCATCCCACGGTTGGAGCCTTCCAGAGTCTGCCACTTCTTGCCTTGGGGAACTTTTCCTTTGCTGC--------TACTCT---------------GAGAG-GGACATCTGTGGGCATCG--CTACCATTCTGGGAACCAGAGGTGAAGTGGGGTTCATTCCCCTCTACTCTAATTGAGAGAGAACCAGGGTAAAGAGACCCTCCTATCCTCACCCATGTTTAATTATGTT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39658573 411 +  71996105 TTCTAAGTTCTGAGGTGGGAGGTGGTGCAGGGCTGGTGTAAAAGTCTCTCCTCATATTTACATCATCAGCTTCCATAATATGTCACTATCCCGTCATGTTT-CC-----------------------TGGT--------CATCACTGTCCTTCCCACAGTGGTGATGATCATTGTTATGTCCTTGATGCCACTCTCCTCTTGCTGGAACATTCCATGCCAGCATTTTAGGCAGCAAACTTTCATCTCACTATTGGAGCCTTCCAGAGTCTGCCACATCTTGCCTTGGGGAACTTTTCCTTTGCTGC--------TACTCT---------------AAGAG-GGATGTCTATGGGCATCA--ATACCATTCTGGGAACCAGAGGTGAAGTGGGGTTCATTCCCCTCTACTCTAATTGAGAGAGAACCAGGGTAAAGAGACCCTCCTAT-CTCACCCATGTTTAATTATGTT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       81827 412 -    115496 TTCTAAGTTCTGAGGTGGGAGGTGGTGCAGGGCTGGTGTAAAAGTCTCTCCTCATATTTGCATCATCAACTCCCATAATATGTCACTATCCTGTCGTGTTT-CC-----------------------TGGT--------CGTCACTGTTCTTCCCACAGTGGTGACGATCATTGTTATGTCCTTGATGCCACTCTCCTCTTGCTGGAACATTCCATGCCAGCATTTTAGGCCGCAAACTTTCATCTCACTATTGGAGCCTTTCAGAGTCTGCCACATCTTGCCTTGGGGAACTTTTCCTTTGCTGC--------TATTCT---------------GAGAG-GGACGTCTATGGGCATCA--ATACCATTCTGGGAACCAGAGGTGAAGTGGGGTTCATTCCCCTCTACTCTAATTGAGAGAGAACCAGGGTAAAGAGACCCTCCTATCCTCACCCATGTTTAATTATGTT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      703473 412 -   1936607 TTCTAAGTTCTGAGGTGGGAGGTGGTGCAGGGCTGGTGTAAAAGTCTCTCCTCATATTTGCATTATCAGCTCCCATAATATGTCACTATCCCGTCGTGTTT-CC-----------------------TAGT--------CGTCACTGTCCTTCCCACAGCGGTGACGATCATTGTTATGTCCTTGATGCCACTCTCCCCTTGCTGGAACTTTCCATGCCAGCATTTTAGGCAGCAAACTTTCATCCCACTGTTGGAGCCTTTCAGAGTCTGCCGCTTCTTGCCTTGGGGAACTTTTCCTTTGCTGC--------TACTCT---------------GAGAG-GGACGTCTGTGGGCATCG--CTACCATTCTGGGAACCAGAGGCGAAGTGGGGTACATTCCCCTCTACTCTAATTAAGAGAGAACCAGGGTAAAGAGACCCTCCTATCCTCACCCATGTTTAATTATGTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138663738 438 - 171630274 CTCTAGGTTCTGAGGTGGGAGG--GCGCAGGGCTGGTGAGGAAGGCTCTCCTCACGTTTGCATCTTCAGCCCCCACAGTATGTCACTATCCCATCGTGCTC-CCCACAGTATGTCACTATCCCATCGTGGCTCCCATCGCGCCAGTGTCCTTCCCACACTGGCGGTGATCACGGTTTTGTCCTTGGCACCGCTCTCCTCTTGCTGGAACATTCCATGCCAGCATCTTAGGCAGCAAACTTTCATCCCACTGTTGGAGCTTTCCAGAG-CTGCCACTTCTTGCCTTGGGGAGCTCTTCCCTTGCTGC--------TACTCT---------------GAGAG-GGACGTCCGTGGGCATCG--CCATCATTCTGGGAACAAGAGGTGCAGTGGGGTTCGTTCCCCTCTACTCTAATTGAGAGAGAAACAGGGTAAAGAGGCTCTCCTATCCTTATGCACATTTAATT--GTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            218057 399 +   1154217 TTCTAGGTTCTGAGGTGGGAGG-AGGGCAGGGCTGGTGCGGAAGGCTCTCCTCACGTTTGCGTCTTCAGCCCCCGCAATATGTCACTATCCCATCGTATTC-CC-----------------------TGGT--------CGTCACTGTCCTTCC--TACTGGTGGTAATTACTGTTATGTCCTTGACACCACTCTCCTCTTGCTGGAACATTCCATGCCGGCATCTTATGCAGCGAAATTTCATCCCACT-CTGGAACTTTCCAGAGTCTGCCACTTCTTGCCTTGGGGAGCTTTTCCCTTGCAGC--------TACTCT---------------GAGAG-GGACATCTGTGGGCATCG--CCATCATTCTGGGAACAAGAAGTGCGGTGGGGTGCATTTCC-----CTCTAATTGAGAGAGAAACAGGGTAAAGAGA--CTCCTATCCTCATGCATgtttaatt--gtt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14037730 394 +  15232693 ---------CTGAGGTGGGAGG-GGCTCAGGGCTGGTGCGGAAGGCTCTCCTCACATTTGCATCTTCAGCCCCCACAATATGTCACTATCCCATCGTGTTC-CC-----------------------TGGT--------GGTCACTGCCCTTCCCACACTGGTGGTGATCACTGTTATGTCCTTGACACCACTCTCCTCTTGCTGGAACATTCCGTGCCAGCATCTTACACAGCAAACTTTCATCCCACTGTTGGAGCTTTCCAGAGTCTGCCACTTCTTGCCTTGGGGAGCTTTTCCCTTGCTGC--------TACCCT---------------GAGAG-GGACATCTGTGGGCATCA--CCATCATTCTGGGAACAAGAGGGGCAGTGGGGTTCATTCCC-----CTCTAAGTGAGAGAGAAACAGGGCAAAGAGACTCTCCTATCCTCGTGCATGTTTAATT--GT-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      287138 409 +    446445 TTCTAGGTTCTGAGGTGGGAGG-GGCGCAGGGCTGGTACGGAAGGCTCTCCTCGCGTTTGCATCTTCAGCCCCCACAATATGTCACTATCCCATCATGTTC-CC-----------------------TGGT--------CGTCACTGTCCTTCCTACACTGGTGATAATCACTGTTATGTCCTCGACACCACTCTCCTCTTGCTGGAACATTCCATGTCAGCATCTTAGGCAGCAAACTTTCATCCCGCTGTTGGAGCTTTCCAGAATCTGCCACTTCTTGCCTTGGGGAGCTTTTGCCTTGCTGC--------TACTCT---------------AAGAG-GGACGTCCGTGGGCATCG--CCATCATTCTGGGAACAAGAGGTGCAGTGGGGTTCATTCCCCTCTACTCTAATTGAGAGAGAAACAGGGTAAAGAGACTCTCCTATCCTCATGTATGTTTAATT--GTT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      144939 426 +   1371726 TTCTGAGTTCTGCGGTGGGAGGTGGTGCAGGGTTGGTGCAGAAGGCTCTCCTCATGTTTCCAGCACCGACTCTCACTATGTGTCGTGGTCCCACGGTGCTC-CA-----------------------TGGT--------CGGCACTGTCCTTCCCACACTGGTGATGGTGACTGTTATGTCCATGATCCCACTCTCCTCTTGCTAGAATATTCTATGCCAGCATTTTAGACAGCAAATTTTCATTCCCCTGTTCGAGCCTTCCAGGGCCCACTTTTTGTTGCTTTGGGGAACTGTTCC-TTGCTAC--------TACTCTTCAGTGTCATGGCAGGAGAG-GGACGTCTGTGGGCACCATCCCCCCCTTCCGGGGACCAGAGGTGAAGTGGGGTGCAGTCCCCTCTACTCTAAGTGAGAGAGAAACAGAGTAAAGAGACCCTCATAACCTCATCTATGTTTAATTATT--
i proCoq1.NW_012150019v1   I 385 I 35
s otoGar3.GL873550          15341559 357 -  18854210 TTCTGAATTTTGAGGTGGGAGGTAGTGCAGGATTGGTACA-AAGGTTCTTGCC-------------------------TGTAT----ATCCCCTGGTGCTCATC-----------------------TGGA--------TGTCACTGTCCCTCCCATACTAGTGACCATGACTGCTATGTCCATGACTCCACATTCCTCTTGCTAGAACATTCCATGACAGCATTTTAG---GCAACCTTTTGTTCCACTATTCGAGCCTTTTAGGGTCCATCTTTTGTTG------------------------T--------TACTCTTCAGTGTCACTGCAG--GAG-GGACATCTGTGGGCACCG--CTGTTATTCTGGAGGCCAGAGGTGAAGTGGGGTGCAGTCCCCTCTACTC----TGAGAGACAGATGGAGTAAAGAGA-CCTCATAACCTCATTAATG-----TTATT--
i otoGar3.GL873550         I 4 C 0
s canFam3.chr12             70390007 383 -  72498081 -------TTCTAAGGTAGG-GATGATGCAGGGTTGCTGTGGAAGGCTGTCCTCATATTTCCACCACTGACTCCCACTATATGCCTTGGTAACATCTTGCCT-CC-----------------------TAGT--------GGTCACTGTCCTTCCCACATTGGTGCTGAT----GTTCTTTTCACAACA------TCCTCTTGCTGTATCATTCCACACCAGCATTTTGGGTTGCAAACTTTCCCTCCAGCATTTGAGCCTTACAAGGTCCACCTCTTCTTACGTTGGGTGACT-TTCCTTTGCTGCCTTCATGTTATTGT---------------GGGAGAGGAAGTATGT-GGCACTG--CAGCCGGTCTAGGAATCAGAAGTAAAGTGGAGCACTTGCCCC----ATCTACCTGAGAGAGA----GAGTCAGGAGA--------TGCTCAACAATGTTTAATTATT--
i canFam3.chr12            I 2 I 2
s dasNov3.JH569424            496353 270 +    935526 CGGCAGGTTCCGCGCTGGG------------GCAGGTGCAGGAGG--GTCCCCGGATCTCCAGCGCCGGCTCGGCCCGTTCACGACAGTCCGGGC-----C-TG-----------------------AGGT--------CCTCACCCTCCGTTCCACACTC-TGGTGATGGCTGTCACAGCCGCAGCACCCCTTGCCTC-TGCTGTA-CTTGCCCCGCCAGCGTTGTGGGTGGAAGCATTTCA--------------------------------------------------------------C--------CACGCA---------------GCACA-GG--------------------------------------------GTGAGGCGCGGTCCCCTCGACTC------GGAGAGCAGCAGGGC---GAGAGCC------CCTCACCCG-GCTTAGTTAGGCT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I

a score=391201.000000
s hg38.chr6_KI270758v1_alt     42126 35 +     76752 tctcttctctccaaatctctcatcctctacagtga
s panTro5.chr6             142745452 35 - 175400573 tctcttctctccaaacctctcatcctctacagtga
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140893679 35 - 173848474 TCTCTTCCCTCCAAACCTCTCATCCTCTACAGCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411211 35 +   2807050 TCTCTTCTCTCCAAACCTCTCATCCTCTACAGTGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704222 35 - 122973662 TCTCTTCTCTCCAAACCTCTCATCCTCTGCAGTGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139334847 35 - 172585720 tctcttctctccaaacctctcatcctctacagtga
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138502081 35 + 170955103 TCTCTTCTCTCCAAACCTCTCATCCTCTACAGTGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      208894 35 +    407600 TCTCTTCTCTCCAAACCTCTCATCCTCTACAGTGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       80850 35 +    463628 TCTCTTCTTTCCAAACCTCTCATCCTCTACAGTGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39658984 35 +  71996105 TCTCTTCTCTCCAAACCTCTCATCCTCTACAGTGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       82239 35 -    115496 TCTCTTCTCTCCAAACCTCTCATCCTCTACAGTGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      703885 35 -   1936607 TCTCTTCTCTGCAAACCTCTCATCCTCTACAGTGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138664176 34 - 171630274 TCTCTTCTCTGCAAACCTCTCATCCCCTACAATG-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            218456 35 +   1154217 tctcttctctccaaacctctcatcctctacagtga
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14038124 13 +  15232693 ----------------------TCCTCTACAGTGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      287547 35 +    446445 TCTCTTCTCTCCAAACCTCTCATCCTCTACAGTGA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15341916 30 -  18854210 ----TCTTCTTTAAACCACTCATCCGCCGGAGTG-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70390392 34 -  72498081 TCTCTCCTCTTCAAAATCCTCTTTCTCCACAGTG-
i canFam3.chr12            I 2 C 0
s dasNov3.JH569424            496623 35 +    935526 CCTCTCCTCTCCCAGCTCCTCTTCCTCCCCAGGCA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      145365 35 +   1371726 I

a score=1844821.000000
s hg38.chr6_KI270758v1_alt     42161 150 +     76752 ----------ggggagggtctttgtctagactgaaggatggaggG-GGAAACCCTTACATTAAGAATCGTAACCGTAAGTCAGGGGACCCAATTATGGGCTGCTCAT----AAC---GGGA-GGGAAAGAAACTTAAGG--AAAAAATCGGCTCAAACCTTGTAACATCat---
s panTro5.chr6             142745487 150 - 175400573 ----------ggggagggtctttgtctagactgaaggatggaggG-GGAAACCCTTACATTAAGAATCATAACCGTAAGTCAGGGGACCCAATTATGGGCTGCTCAT----AAC---GGGA-GGGAAAGAAACTTCAGG--AAAAAATCGGCTCAAACCTTGTAACATCat---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140893714 149 - 173848474 ----------GGGGAGGGTCTTTGTCTAGA-TGAAGGATGGAGGG-GGAAACCCTTACATTAAGAATCATAACCGTAAGTCAGGGGACCCAATTATGGGCTGCTCAT----AAC---GGGA-GGGAAAGAAACTTCAGG--AAAAAATTGGCTCAAACCTTGTAACATCat---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411246 149 +   2807050 ----------GGGGAGGGTCTTTGTCTACA-AGAAGGATGGAGGG-GGAAACCCTTACATTAAGAATCATAACCGTAAGTCAGGGGACCCAATCATGGGCTGCTCAT----AAC---GGGA-GGGAAAGAAACTTCAGG--AAAAAATCGGCTCAAACCTTGTAACATCAT---
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704257 149 - 122973662 ----------GGGGAAGTTCTTTGTCTAGACTGAAGGATGGAGGG-GGAAACCCTTACATTGAGAATTGTAACCGTAAGTCAGGGGACCCAATTAGGGGCTGCTCAT----AAT---GGGA-GGGAAAGAAACTTCAGG--AAAAAGTCAGCTCAAACCTTGT-ACATCAT---
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139334882 150 - 172585720 ----------agagagggtctttgtcaggactgaaggatggaggG-GGAAACCCTTACATTAAGAATAGTAACCATAAGTCAGGGGACCCAATTATGGGCTGCTCAC----AAC---GGGA-GGGAAAGAAACTTCAGG--AAAAAATCGGCTCAAACCTTGTAACATCat---
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138502116 150 + 170955103 ----------AGAGAGGGTCTTTGTCGAGACTGAAGGATGGAGGG-GGAAACGCTTACATTAAGAATAGTAACCATAAGTCAGGGGACCCAATTATGGGCTGCTCAT----AAC---GGGA-GGGAAAGAAACTTCAGG--AAAAAATCGGCTCAAACCTTGTAACATCAT---
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      208929 151 +    407600 ----------AGAGAGGGTCTTTGTCGAGACTGAAGGATGGAGAG-GGAAACCCTTACATTAAGAATAGTAACCATAAGTCAGGGGACCCAATTATGGGCTGCTCAT----AAC---GGGAGGGGAAAGAAACTTCAGG--AAAAAATCGGCTCAAACCTTGTAACATCAT---
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       80885 151 +    463628 ----------AGAGAGGCTCTTTGTCAAGACTGAAGGATGGAGGG-GGAAACCCTTACATTAAGAATAGTAACCATAAGTCAGGGGACCCAATTATGGGCTGCTCAT----AGC---GGGAGGGGAAAGAAACTTCAGG--AAAAAATCAGCTCAAACCTTGTAACATCAT---
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39659019 151 +  71996105 ----------AGAGAGGGTCTTTGTCGAGACTGAAGGATGGAGGG-GGAAACGCTTACGTTAAGAATAGTAACCATCAGTCAGGGGACCCAATTATGGGCTGCTCAT----AAC---GGGAGGGGAAAGAAACTTCAGG--AAAAAATCGGCTCAAACCTTGTAACATCat---
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       82274 151 -    115496 ----------AGAGAGGGTCTTTGTCGAGACTGAAGGATGGAGGG-GGAAACGCTTACATTAAGAATAGTAACCATAAGTCAGGGGACCCAATTATGGGCTGCTCAT----AAC---GGGAGGGGAAAGAAACTTCAGG--AAAAAATCGGCTCAAACCTTGTAACATCAT---
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      703920 150 -   1936607 ----------AGAGAGTGTCTTTGTCGAGACTGAAGGATGGAGGG-GGAAACCCTTACATTAAGAATAGTAACCATAAGTCAGGGGACCCAATTATGGGCTGCTCAT----AAC---AGGA-GGGAAAGAAACTTCAGG--AAAAAATTGGCTCAAACCTTGTAACATCat---
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138664210 147 - 171630274 ---------------GGGTCTTTGTCTCCACTGAAGGATGGAGCA-GGGAGCCCTTACATTAAGAATAGTAACCATAAGTTAGGGGGCCCAATTATGGGCTGCTCAT----AAC-AGTGGA-GGGAAAGAAACTTCAGG--AAAAAATTGACTCAAACCTTGTAACATCAT---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            218491 151 +   1154217 ----------ggagagggtctttgtctccactgaaggatggag-g-GGAAGCCCTTATATTAAGAAGAGTAACCTTAAATTAGGGGGCCCAATTATGGGCTGCTCAT----AAC-AGGGGA-GGGAAAGAAACTTCAGG--AAAAAATTGACTCAAACCTTGTAACACCAT---
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14038137 151 +  15232693 ----------GGAGAGGGTCTTTGTCTCCACTGAAGGGTGAAG-G-GGAAGCCCTTTTATTAAGAATAGTAACCATCAGTTAGGGGGCCCAATTATGGGCTGCTCCC----TCC-CGGGGA-GGGAAAGAAACTTCAGG--AAAAAATTAACTGAAACCTTGTAACATCAT---
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      287582 152 +    446445 ----------GGAGAGGGTCTTTGTCTACAATGAAGGATGGAGGG-GGAAGCCCTTACATTAAGAATAGTAGCCATAAGTTAGGGGGCCCAATTATGGGCTGCTCAT----AAC-AGGGGA-GGGAAAGAAACTTCAAG--AAAAAATTGACTCAAACCTTGTAACAGCAT---
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      145400 153 +   1371726 ----------GGGAAGGGCCTTTATCTGGACTGAAGGATGGAGGC-GGAAATTCTCACATTTACAACAGTAAC-TCAAGTTAGGTGGCCCAATTACAGGCTGATCAG----AACAGGGGGA-GGGAGAGAAATTTCAGG-AAAGAAATTTGCTCAAACCTTATGGCATCAT---
i proCoq1.NW_012150019v1   I 35 C 0
s otoGar3.GL873550          15341946 153 -  18854210 -----------GGGAGGGTCTTTATCTGCACTGAAGGGTGGAGGG-GGAGATCCTTATATTTAGAACAGTAACTTCAAATTAGGTGGCCCAATTATAGGCTGATCAT----AAT-GGAGAA-GGGAGGGAAATTTCAGGAAAAAAAATTAGTTCAAGACTTACGACATCat---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70390426 155 -  72498081 -----------GGAAGGGTCTTCACCTACATTGAAAGATGAAGGGAAAAAAATCTTACATTAAGAATAGCAACTTCAAGTTAGGTG-CCCAAATATGGGCTTATCATTCAGATT---GTGA-AGTGAAGACACTTCAGGAAAAAAAATAAACTCAAACCATATCACATCAT---
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            496658 168 +    935526 GGGGTGGTGAGGACGGCGTCTTTATCCAGCCTGGAGAATGGAGGG-GACATTTCTCACAGTAAGAATAGCAACCTCAAATTAGACGGTCCAAATATGGGCTGATCAC----CACAGGGGGA-GGGAAAGAAACGTCAGGGCAAGAAATCAACTTGCATTTTATCTTATCATCAT
i dasNov3.JH569424         C 0 I 495
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I

a score=451486.000000
s hg38.chr6_KI270758v1_alt     42311 44 +     76752 aatgctgcatatgcttttattattacattgacatgaaaatctgc
s panTro5.chr6             142745637 44 - 175400573 aatgccgcatatgcttttattattacattgacatgaaaatctgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140893863 44 - 173848474 aatgctgcatatgcttttattattacatcgacatgaaaatctgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411395 44 +   2807050 AATGCTGCATatgtttttattattacattgacatgaaaatctgc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704406 44 - 122973662 AATGCTGCATATGCTTTTATTATTACATTGACATCAAAATCTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139335032 44 - 172585720 aatactgcatatgcttttattattacattgacatgaaaatctgc
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138502266 44 + 170955103 AATACTGCATATGCTTTTATTATTACATTGACATGAAAATCTGC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      209080 44 +    407600 AATACTGCATATGCTTTTATTATTACATTGACATGAAAATCTGC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       81036 44 +    463628 AATACTGCATATGCTTTTATTATTACATTGACATGAAAATCTGC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39659170 44 +  71996105 gatactgcatatgcttttattattacattgacatgaaaatctgc
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       82425 44 -    115496 AATACTGCATATGCTTTTATTATTACATTGACATGAAAATCTGC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      704070 44 -   1936607 aatactgaatatgcttttattattacattgacatgaaaatctgc
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138664357 35 - 171630274 AATGCTACAAAGT---------TTATATTGACATGAAAATCTAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            218642 35 +   1154217 AATACTACAAAGT---------TTACATTGACATAAAAATCTAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14038288 35 +  15232693 AATGCTACAAAGT---------TTACATTGACATGAAAATCTAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      287734 35 +    446445 AATGCTACAAAGT---------TTACATTGACATGAAAATCTAC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      145553 44 +   1371726 AATGTCACAtatgctaatattgttacattgaaatgaaaatctaa
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15342099 44 -  18854210 tatgcagcatatgcttatattattacattgaaataaaaatctaa
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70390581 43 -  72498081 AATATCACAAatgcttatatt-ttatattgaaatgaacatctaa
i canFam3.chr12            C 0 C 0
e mm10.chr17                34350383 3799 +  94987271 I
e micMur3.chr6               4479388 2231 + 123392446 I
e dasNov3.JH569424            496826 495 +    935526 I

a score=722819.000000
s hg38.chr6_KI270758v1_alt     42355 53 +     76752 aattaaattaaaaattgttctggagaactcttgaaatcctgagactatatctg
s panTro5.chr6             142745681 53 - 175400573 aattaaattaaaaattgttctggagaactcttgaaatcctgagactatatctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140893907 53 - 173848474 aattaaattaaaaattgttctggagaactcttgaaatcctgagactatatctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411439 53 +   2807050 aattaaattaaaaattgttctggagaactcttgaaatcctgagactatatctg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704450 53 - 122973662 AATTAAATTAAAAATTGTTCTGGAGAACTCTTGAAATCCTGAGACTATATCTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139335076 53 - 172585720 aattaaattaaaaattgttctggagaactcttgaaatcctgagactatatctg
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138502310 53 + 170955103 AATTAAATTAAAAATTGTTCTGGAGAACTCTTGAAATCCTGAGACTATATCTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      209124 53 +    407600 AATTAAATTAAAAATTGTTCTGGAGAACTCTTGAAATCCTGAGACTATATCTG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       81080 53 +    463628 AATTAAATTAAAAATTGTTCTGGAGAACTCTTGAAATCCTGAGACTATATCTG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39659214 53 +  71996105 aattaaattaaaaattgttctggagaactcttgaaatcctgagactatatctg
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       82469 53 -    115496 AATTAAATTAAAAATTGTTCTGGAGAACTCTTGAAATCCTGAGACTATATCTG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      704114 53 -   1936607 aattaaattaaaaattgttctggagaactcttgaaatcctgagactatatctg
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138664392 52 - 171630274 AATTAAATT-AAAATTATTCTGGAGAACTTTTGAAATCCTGAGTCTCTATCGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            218677 49 +   1154217 AATTAAATTAAAAATTATTCTGGAAAACTTTTGAAATCCTGAGTCTCT----G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14038323 52 +  15232693 AATTAAATCAAAAATTATTCTGGAGAACTTTTG-AATCCTGAATGTCTCTCTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      287769 53 +    446445 AATTAAATTAAAAATTATTCTAGAGAACTTTTGAAATCCTGAGTCTCTATCTG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      145597 53 +   1371726 aattaaattaaaaattatcctggagaactcttgaaaccctgagactatatctg
i proCoq1.NW_012150019v1   C 0 I 6137
s otoGar3.GL873550          15342143 53 -  18854210 aattaaattaaaaattattctgtagaactcttgagaccctgagacaatatctg
i otoGar3.GL873550         C 0 I 2
s mm10.chr17                34354182 45 +  94987271 AAATAAGTTTAAAACTGCTCTTCCCAGCTCTTGAAA--------GTGGATCTG
i mm10.chr17               I 3799 I 1
s canFam3.chr12             70390624 53 -  72498081 cgttaaattttaaattattctggagaactcttgaatccctgagaacatctctg
i canFam3.chr12            C 0 I 1
e micMur3.chr6               4479388 2231 + 123392446 I
e dasNov3.JH569424            496826 495 +    935526 I

a score=843639.000000
s hg38.chr6_KI270758v1_alt     42408  83 +     76752 agacccc-------------ctctagctcaa----ggaacacAGACTTAAGGGGAACGTAAAGGAAAATCTGGCAGAAACAAAAA--CACACAC----------------------AAAATATG
s panTro5.chr6             142745734  83 - 175400573 agacccc-------------ctctagctcaa----ggaacacAGACTTAAGGGGAACGTAAAGGAAAATCTGGCAGAAACAAAAA--CACACAT----------------------AAAATGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140893960  83 - 173848474 agacccc-------------ctctagctcaa----ggaacacAGACTTAAGGGGAACGTAAAGGAAAATCTGGCAGAAACAAAAA--CACACAC----------------------AAAATGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411492  83 +   2807050 agacccc-------------ctctagctcaa----ggaacacAGACTTAAGGGGAACGTAAAGGAAAATCTGGCAGAAACAAAAA--CACACAC----------------------AAAATGTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704503  83 - 122973662 AGATCCC-------------CTCTAGCTCAA----GGAACACAGACTTAAGGGGAATGTAAAGGAAAATCTGGCAGAAACAAAAA--CACACAC----------------------AAAATGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139335129  83 - 172585720 agacccc-------------ctctagctcaa----ggaacacAGACTTAAGGGGAATGTAAAGGAAAATCTGGCAGAAATAAAAA--CACACAC----------------------AAAATGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138502363  83 + 170955103 AGACCCC-------------CTCTAGCTCAA----GGAACACAGACTTAAGGGGAATGTAAAGGAAAATCTGGCAGAAACAAAAA--CACACAC----------------------AAAATGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      209177  83 +    407600 AGACCCC-------------CTCTAGCTCAA----GGAACACAGACTTAAGGGGAATGTAAAGGAAAATCTGGCAGAAACAAAAA--CACACAC----------------------AAAATGTG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       81133  83 +    463628 AGACCCC-------------CTCTAGCTCAA----GGAACACAGACTTAAGGGGAATGTAAAGGAAAATCTGGCAGAAACAAAAA--CACACAC----------------------AAAATGTG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39659267  83 +  71996105 agacccc-------------ctctagctcaa----ggaacacAGACTTAAGGGGAATGTAAAGGAAAATCTGGCAGAAACAAAAA--CACACAC----------------------AAAATGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       82522  83 -    115496 AGACCCC-------------CTCTAGCTCAA----GGAACACAGACTTCAGGGGAATGTAAAGGAAAATCTAGCAGAAACAAAAA--CACACAC----------------------AAAATGTG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      704167  83 -   1936607 agacccc-------------ctctagctcaa----ggaacacAGACTTAAGGGGAATGTAAAGGAAAATCTGGCAGAAACAAAAA--CACACAC----------------------AAAATGTG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138664444  83 - 171630274 AGA--CC-------------CTCTAGCTCAC----GGAACACAGACTTAAGGGGAATGTAAAGGAAAATCTAGCAGAGACAAACACGCACACAC----------------------AAAATGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            218726  83 +   1154217 AGA--CC-------------CTCTAGCTCAA----GGAACACAGACTTAAGGGGGGTGTAAAAGAAAATCTAGCAGAAACAAACGCACACACAC----------------------AAAATATG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14038375  78 +  15232693 AGA--CC-------------CTCTAGCTCAA----GGAACACAGA-TTAAGGGGAATGTAAAGGAAAATCTAGCAG----AAACACACACACAC----------------------CAAATGTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      287822  83 +    446445 AGA--TC-------------CTCTAGCTCAA----GGAATACAGACTTAAGGGGAATGTAAAGGAAAATCTGGCAGAAATAAACACGCGCACAC----------------------ACAATGTG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15342198  62 -  18854210 AGTTGCC--------CCACACTCCAGAGCAA----GGGAAACGGACTTAA-----------------------TAGGAAAAAAGA--TGCCTAT----------------------AAA---TC
i otoGar3.GL873550         I 2 C 0
s mm10.chr17                34354228  78 +  94987271 AGACCCC--------------------TCAATAGTGTGAAAGAGAATTTAGGGGATCCCCAAGAAGGACT--GAAGAAAGAAGAG--CACATAA----------------------CAGGGGTG
i mm10.chr17               I 1 C 0
s canFam3.chr12             70390678 117 -  72498081 ggaacccagGGAGACTTGCACTCTGATTCAA----GAAA-ATTGACTTAAGGGAAATTTAAGGGAAAATCTAACCTAAACAAAGA--CACATGCCaaaaaaaaaaaaaaaaaaaagaaaGTGTG
i canFam3.chr12            I 1 C 0
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      145650 6137 +   1371726 I
e dasNov3.JH569424            496826 495 +    935526 I

a score=474251.000000
s hg38.chr6_KI270758v1_alt     42491 50 +     76752 CCT---------A--------------TCATTAT------ACTCTTCATGCCCAAATATTATGCTGAGAAGGTTATTAC
s panTro5.chr6             142745817 50 - 175400573 CCT---------A--------------TCATTAT------ACTCTTCATGCCCGAATATTATGCTGAGAAGCTAATTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894043 50 - 173848474 CCT---------A--------------TCATTAT------ACTCTTCATGCCCGAATATTATGCTGAGAAGCTAATTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411575 50 +   2807050 CCT---------A--------------TCATTAT------ACTCTTCATGCCTGAATATTATGCTGAGAAGGTTATTAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704586 50 - 122973662 CCT---------A--------------TCATTAT------ACTCTTCATGCCCAAATATTATGCTGAGAAGCTTATTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139335212 50 - 172585720 CCT---------A--------------TCATTAT------ACTCTTCATGCCCAGATATTATGCTGAGAAGCTTATTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138502446 49 + 170955103 CCT---------A--------------TCATTAT------ACTCTTCATG-CCAGATACTATGCTGAGAAGCTTGTTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      209260 49 +    407600 CCT---------A--------------TCATTAT------ACTCTTCATG-CCAGATACTATGCTGAGAAGCGTGTTAC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       81216 50 +    463628 CCT---------A--------------TCATTAT------ACTCTTCATGCCCAGATACTATGCTGAGAAGCTTGTTAC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39659350 49 +  71996105 CCT---------A--------------TCATTAT------ACTCTTCATG-CCAGATACTATGCTGAGAAGCTTGTTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       82605 50 -    115496 CCT---------A--------------TCATTAT------ACTCTTCATGCCCAGATACTATGCTGAGAAGCTTGTTAC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      704250 50 -   1936607 CCT---------A--------------TCATTAT------ACTCTTCATGCCCAGATATTATGCTGAGAAGCTTATTAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138664527 61 - 171630274 CCTGTAA----AA--------------TCCCTATTATTACACTCTTTGTGCCCAAGTATTATGCTGAGAAGCTTATTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            218809 55 +   1154217 CCTGTAA----AA--------------TCCCTAT------ACTCTTCGTGCCCAAGTATTATGCTGAGAAGCTTATTAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14038453 61 +  15232693 CCTGTAA----AA--------------TCCCTGTTATTATGCTCTTCGGGCCCAAGTATTATGCTGAGAAGCTTATTAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      287905 58 +    446445 CCTGTAA----AA--------------TCCCTATTAT---ACTCTTTATGCCTAAATATTATGCTGAGAAGCTTATTAA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15342260 50 -  18854210 TCT---------G--------------TGGTTAT------GCACTTTGTGCCCAAACACTGTGTTGAAAAGTTTCTTAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34354306 64 +  94987271 TCC---------AAGGCCCTCCATTACTAGCCAT------GCTCATTGTACCCACACGCTATATCAGAAAGCTTATTAC
i mm10.chr17               C 0 C 0
s canFam3.chr12             70390795 59 -  72498081 CCTGTAGTTTTAA--------------TCATTAT------TATTTTTGTGCCCAAACATCTGGTTGATAAGCTTATTAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            497321 50 +    935526 TCT---------A--------------TTTTTGT------ACTCCCTGTGCCCAAGCATTGAATTAAGAAGTACAGCAA
i dasNov3.JH569424         I 495 C 0
e micMur3.chr6               4479388 2231 + 123392446 I
e proCoq1.NW_012150019v1      145650 6137 +   1371726 I

a score=584691.000000
s hg38.chr6_KI270758v1_alt     42541 43 +     76752 ATTTCTTTGGTAAACATCTGAGAGTAATTAAACCTTTTATTAC
s panTro5.chr6             142745867 43 - 175400573 ATTTCTTTGGTAAATATCTGAGAGTAATTAAACCTTTTATTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894093 43 - 173848474 ATTTCTTTGGTAAATATCTGAGAGTAATTAAACCTTTTATTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411625 43 +   2807050 ATTTCTTTGGTAAATATCTGAGAGTAATTAAACCTTTTATTAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704636 43 - 122973662 ATTTCTTTGGTAAAAATCTGAGAGTAATTAAACCTTTTATTAC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139335262 43 - 172585720 ATTTCTTTGGTAAATATCTGAGAGCAATTAAACCTTTTATTAC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138502495 43 + 170955103 ATTTCTTTGGTAAATATCTGAGAGCAATTAAACCTTTTATTAC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      209309 43 +    407600 ATTTCTTTGGTAAATATCTGAGAGCAATTAAACCTTTTATTAC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       81266 43 +    463628 ATTTCTTTGGTAAATATCTGGGAGCAATTAAACCTTTTATTAC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39659399 43 +  71996105 ATTTCTTTGGTAAATATCTGAGAGCAATTAAGCCTTTTATTAC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       82655 43 -    115496 ATTTCTTTGGTAAATATCTGAGAGCAATTAAACCTTTTATTAC
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      704300 43 -   1936607 ATTTCTTTGGTAAATATCTGAGAGCAATTAAACCTTTTATTAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138664588 42 - 171630274 ATTTCTTTGGTAAATAT-TGAGAGTAATTAAACCTTTTATCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            218864 43 +   1154217 ATTTCTTTGGTAAATATCTGAGAGTAATTAAACCCTTTATCAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14038514 43 +  15232693 ATTTCTTTGGTAAATATATGCGAGTAATTAAACCTTTTATGAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      287963 43 +    446445 ATTTATTTGGTAACTATCTGAGAGTAATTAAACCTTTTATCAC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4481619 43 + 123392446 ATTTCTTTGGCAAATATCTGAGAGTAATTAAGCCCTTCATTAC
i micMur3.chr6             I 2231 I 346
s otoGar3.GL873550          15342310 43 -  18854210 ATTTCTTAGGTAAGTATCTGAGAGTAATTAAAGCCTTTATTAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34354370 25 +  94987271 ATTTCTTGGGTG-----------------AAGCCTTTGTTTT-
i mm10.chr17               C 0 C 0
s canFam3.chr12             70390854 32 -  72498081 GTTTTCTTAGTA----TCTCAGAGTCAATA-------TCTGAC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            497371 43 +    935526 ATATCTTTGGTAACTATCTGAGAGTAACTAGAGTCTTCATTAC
i dasNov3.JH569424         C 0 C 0
e proCoq1.NW_012150019v1      145650 6137 +   1371726 I

a score=2988578.000000
s hg38.chr6_KI270758v1_alt     42584 252 +     76752 TCAGCAAAGGGAGATAAAGTACCTGAGTAAAAAGAGCAATAAAGTAGCCCACAAGGGACCTTGGCCCAGAGCTCtgatcctggagagggcagttcctttctctgggtctctgttttctcatcagtggaatga--gggATGGCACGTTTGATATTCAGTTTTGCTTCCAA-C--TCC--AGCCCGATGAGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TT--GGGAATCTTTGATGTGTGGCAAGGTGGAGGGAAGGGTG
s panTro5.chr6             142745910 252 - 175400573 TCAGCAAAGGGAgataaagtacctgagtaaaaagagcaataaagtagcccacaagggaccttggcccagagctctgatcctggagagggcagttcctttctctgggtctctgttttctcatcagtggaatga--gggATGGCACGTTTGATATTCAGTTTTGCTTCCAA-C--TCC--AGCCCGATGAGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TT--GGGAATCTTTGATGTGTGGCAAGGTGGAGGGAAGGGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894136 252 - 173848474 TCAGCAAAGGGAgataaagtacctgagtaaaaagagcaataaagtagcccacaagggaccttggcccagagctctgatcctggagagggcagttcctttctctgggtctctgttttctcatcagtggaatga--gggATGGCACGTTTGATATTCAGTTTTGCTTCCAA-C--TCC--AGCCCGATGAGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TT--GGGAGTCTTTGATGTGTGGCAAGGTGGAGGGAAGGGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411668 252 +   2807050 TCAGCAAAGGGAgataaagtacctgagtaaaaagagcaataaagtagcccacaagggaccttggcccagagctctgatcctggagagggcagttcctttctctgggtctctgttttctcatcagtggaatga--gggACGGCACGTTTGATATTCAGTTTTGCTTCCAA-C--TCC--AGCCCGATGAGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TT--GGGAATCTTTGATGTGTGGCAAGGTGGAGGGAAGGGTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704679 251 - 122973662 TCAGCAAAGGGAGATAAAGTACGTGAGTAAAAAGAGTAATAAAATAGCCAACAAGGGACCTTGGCCTGGAGCTCtgatcctggaaagggcagttcctttctctgggcctctgttttctcatcagtggaacga--aggatggcacgtttgatactcag-tttgcttccaa-c--tcc--agccctatgaGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TT--GGGAATCTTTAATGTGTGGCAAGGTGGAGGGAAGGGTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139335305 248 - 172585720 TCAGCAAAGGGAgataaagtacctgagtaaaaagagcaataaagtagcccacaagggaccttggcccggtgctgtgatcctggagagggcagttcctttctctgggcctctgttttctcatcagtggaatgagggggatggcacatttgatattccgttttgcttccaa-c--tcc--agccctatgaGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TC--GGGAATCTTTGATGTGTGGCA------AGGGAAGGGTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138502538 248 + 170955103 TCAGCAAAGGGAGATAAAGTACCTGAGTAAAAAGAGCAATAAAGTAGCCCACAAGGGACCTtggcccggtgctgtgatcctggagagggcagttcctttctctgggcctctgttttctcatcagtggaatgagggggatggcacatttgatattctgttttgcttccaa-c--tcc--agccctatgaGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TC--GGGAATCTTTGATGTGTGGCA------AGGGAAGGGTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      209352 246 +    407600 TCAGCAAAGGGAgataaagtacctgagtaaaaagagcaataaagtagcccacaagggaccttggcccggtgctgtgatcctggagagggcagttcctttctctgggcctctgttttctcatcagtggaatga--gggATGGCACATTTGATATTCCGTTTTGCTTCCAA-C--TGC--AGCCCTATGAGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TC--GGGAATCTTTGATGTGTGGCA------AGGGAAGGGTG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       81309 246 +    463628 TCAGCAAAGGGAgataaagtacctgagtaaaaagagcaataaagtagcccacaagggaccttggcccggtgctctgatcctggagagggcagttcctttctctgggcctctgttttctcatcagtggaatga--gggatggcatatttgatattccgttttgcttccaa-c--tcc--agccctatgaGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TC--GGGAATCTTTGATGTGTGGCA------AGGGAAGGGTG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39659442 246 +  71996105 TCAGCAAAGGGCGATAAAGTACCTGAGTAAAAAAAGCAATAAAGTAGCCCACAAGGGACCTtggcccggtgctgtgatcctggagagggcagttcctttctctgggcctctgttttctcatcagtggaatga--gggatggcatatttgatattccattttgcttccaa-c--tcc--agccctatgaGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TC--GGGAATCTTTGATGTGTGGCA------AGGGAAGGGTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       82698 246 -    115496 TCAGCAAAGGGAgataaagtacctgagtaaaaagagcaataaagtagcccaaaagggaccttggcccggtgctctgatcctggagagggcagttcctttctctgggcctctgttttctcatcagtggaatga--gggatggcacatttgatattccgttttgcttccaa-c--tcc--agccctatgaGTGCCATGCTCTGGTGGAGACTTGGCACTA-G-TC--GGGAATCTTTGATGTGTGGCA------AGGGAAGGGTG
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      704343 252 -   1936607 TCAGCAAAGGGAgataaagtacctgagtaaaaagagcaataaaggagcccacaagggaccttggcccagtgctctgatcctggggagggcagttcctttctctgggcctctattttctcatcagtggaatga--gggatggcacatttgatattcggttttgcttccaa-c--tcc--agccctatgaGTGCCATGCTCTGGTGGAGACTCGGCACTA-G-TC--GGGAATCTTTGATGTGTGGCAAGGTGGAGGAAAGGGTG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138664630 250 - 171630274 TCAGCAAAAGGAGATAAAGTACCTAAGGAAAAACAGCACTAAAGTAGCCCGCGAGGGACCTTGGCCTGGTGCTCtgatcctggaaagggcagttcctttctctgggcctcgac--tctcatcagtggaatga--gggAAGGCACATTTGACATTCAGTTTTGCTTCCAG-C--TCC--AGCCCTATGAGTGCCATGCTCTGGTGGAGACTTGACACTA-G-TT--GGGAATCTTTGATGTGTGGCAAGGTGGAGGGAAGAGTG
i calJac3.chr4             C 0 I 2
s saiBol1.JH378315            218907 252 +   1154217 TCGGCAAAGGGAGATAAAGTACCTGAGTAAAAAGAGCACTAAAGTAGCCCACAAGGGACCTTGCCCTAGTGCTCCgatcctggagagggcagttcctttctctgggcctctactttttcatcagtggaataa--ggCAAGGCACATTTGACATTCAGTTTTGCTTCCAA-C--TCC--AGCCCTATGAGTGCCATGCTCTGGTGGAGACTTGACACTA-G-CT--GAGAATCTTTGATGTGTGGCAAGGGGGAGGGAAGTGTG
i saiBol1.JH378315         C 0 I 2
s cebCap1.NW_016107339v1    14038557 249 +  15232693 TCAGCAAAGGGAGATAAAGTACCTGAGT-AAAGGAGCACTGACGTAG-CCGCAAGGGACCGTGG-CTGGTGCTCTGATCCTGCAGAGGGACATTCCTTTCCCTGGGCCTCTACTTTCTCATCAGTGGAATAA--GGGAAGGCACATTTGACGTTCAGTTTTGCTTCCAA-C--TCC--AGCTCTATGAGTGCCATGCTCTGGTGGAGACTTGACACTA-G-TT--GGGAATCTTTGATGTGTGGCAAGGTGGAGGGAAGTGTG
i cebCap1.NW_016107339v1   C 0 I 2
s aotNan1.NW_018508875v1      288006 252 +    446445 TCAGCAAAGGGAgataaagtacctgagtaaaaagagcactacagtagcctacaagggaccttggtctggtgctctgatcctggaaagggcagttcctttctctgggcctctactttctcatcagtgggatga--gggAAGGCACATTTGACATTCAGTTTTGCTTCCAA-C--TCC--AGCCCTGTGAGTGCCATGCTCTGGTGGAGACTTGACACTA-G-TT--GGGAATCTTTGATGTGAGGCAAGGTGGAGGGAAGTGTG
i aotNan1.NW_018508875v1   C 0 I 23
s otoGar3.GL873550          15342353 250 -  18854210 CTGGCAAAGGGAGATAAAGAACCAAAGTAAGAGGAGTAATAAACTGGCCCACAGGGGACCTTGGCCCGGGGCTCTGATCGGGAGGAG----ATTCCTTTCTCCTGGCCTCTAGCTTTTCATCAGT-TAATGC--GGGATGGGACATTCCATATTCAGTCTTGCTTCCAC-CTTTCC--AGCCCTAGGAGTGCCGTGTTCTGGTGGCAACTTGGCACTATG-TG--GGGAATCTTTGGTGTGTGGTGGGGCAGAGGGAAGGGGA
i otoGar3.GL873550         C 0 I 3
s mm10.chr17                34354395 232 +  94987271 CCAGTAAAAG------------------AGAAAGAACAAAGAAAAAACACAC-AGGCACCTTGGCCTGATGTTCTGGTCTTGGACAGGGAACATCC--CCTCCTAGACTTGGTTTTCTACTCAGTAGGGTGA--AGGTTGA-GTATCTGATAGACAGTCATGCTCTGCA-C--TCTGAGGGTCCACAGACTCCGTGTTGTGAGAGAG-CTTGGCCCTA-GATG--GGGAATCATAGAAGTTCAGCAAGCTGAAGGACAGGACA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70390886 245 -  72498081 TCAGCAAAGAGGAATAGAGAATCAAGATAAAAAGAGCAATAAACTTGCACATATGAGACCTTAGCTGGGTGCCATGATGTTGGGGAGGGTAATTCCTTTCTTTAG---CCTGTTTTCTCACCAGTAAAAGCA--GAGATGGGGCATTTGCTTTTCAGTCTTGCTTTTAA-C--TCT--AATCCCTAGCAAACTGCATTCAGAAGCAAA-----CAGTA-G-GTGGGGGGACCCTTGATGTGTGGGA-GGTGGAGAAAAGGTTG
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            497414 231 +    935526 CCAGCAAAGGGAGATAAAGAACCGAAATAAAAAGTGCAATAAACTAGGGCG-AAGGGGCCTTGGC---AGGCACTGCCCCGGGAGGTGGTAAGTCCCTTCTCTGGG------TTTTCTCGTCACTAAAGTGC--GGGCTGGGAAGTGTGATACCGAGTCCTGCTTGCGCTC--TGC--AGGCCCCTGCGCGCAGGGCTCAGGTgcgcgcg-ggcgcca-g-gt--gggcagcc---gggcgcggtg------aggggagcg--
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4481662 346 + 123392446 I
e proCoq1.NW_012150019v1      145650 6137 +   1371726 I

a score=79359.000000
s hg38.chr6_KI270758v1_alt     42836 12 +     76752 GATGG--CACCCGC--
s panTro5.chr6             142746162 12 - 175400573 GATGG--CACCCGC--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894388 12 - 173848474 GATGG--CACCCCC--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411920 12 +   2807050 GATGG--CACCCGC--
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704930 12 - 122973662 GACAG--CACCCGC--
i nomLeu3.chr1a            C 0 I 1
s rheMac8.chr4             139335553 12 - 172585720 GACAG--CACCCGC--
i rheMac8.chr4             C 0 I 3
s macFas5.chr4             138502786 12 + 170955103 GACAG--CACCCGC--
i macFas5.chr4             C 0 I 3
s macNem1.NW_012013344v1      209598 12 +    407600 GACAG--CATCCGC--
i macNem1.NW_012013344v1   C 0 I 9
s cerAty1.NW_012003702v1       81555 12 +    463628 GACAG--CACCCGC--
i cerAty1.NW_012003702v1   C 0 I 9
s chlSab2.chr17             39659688 12 +  71996105 GACAG--CACCCGT--
i chlSab2.chr17            C 0 I 9
s manLeu1.NW_012101600v1       82944 12 -    115496 GACAG--CACCCGC--
i manLeu1.NW_012101600v1   C 0 I 9
s colAng1.NW_012115555v1      704595 12 -   1936607 GACAG--CACCCGC--
i colAng1.NW_012115555v1   C 0 I 9
s calJac3.chr4             138664882 12 - 171630274 GACAG--CACCCGA--
i calJac3.chr4             I 2 I 1
s saiBol1.JH378315            219161 12 +   1154217 GACAG--CACCCAC--
i saiBol1.JH378315         I 2 I 1
s cebCap1.NW_016107339v1    14038808 12 +  15232693 GACAG--CACCCAA--
i cebCap1.NW_016107339v1   I 2 I 1
s otoGar3.GL873550          15342606 12 -  18854210 AGCAA--CACTGGC--
i otoGar3.GL873550         I 3 C 0
s mm10.chr17                34354627  9 +  94987271 --AAG--TAGCCA---
i mm10.chr17               C 0 C 0
s canFam3.chr12             70391133 13 -  72498081 GACAGACCACCAC---
i canFam3.chr12            I 2 I 2
s dasNov3.JH569424            497645  9 +    935526 -------ggcctgcgg
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4481662 346 + 123392446 I
e proCoq1.NW_012150019v1      145650 6137 +   1371726 I
e aotNan1.NW_018508875v1      288258 23 +    446445 I

a score=2111.000000
s hg38.chr6_KI270758v1_alt     42848 5 +     76752 TGATG
s panTro5.chr6             142746174 5 - 175400573 TGATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894400 5 - 173848474 TGATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411932 5 +   2807050 TGATG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704943 5 - 122973662 CGAGG
i nomLeu3.chr1a            I 1 I 3
s rheMac8.chr4             139335568 5 - 172585720 TGGTG
i rheMac8.chr4             I 3 I 1
s macFas5.chr4             138502801 5 + 170955103 AGGTG
i macFas5.chr4             I 3 I 1
s calJac3.chr4             138664895 5 - 171630274 CGAGG
i calJac3.chr4             I 1 I 3
s saiBol1.JH378315            219174 5 +   1154217 CGAGG
i saiBol1.JH378315         I 1 I 3
s cebCap1.NW_016107339v1    14038821 5 +  15232693 CAAGG
i cebCap1.NW_016107339v1   I 1 C 0
s otoGar3.GL873550          15342618 5 -  18854210 ACAGG
i otoGar3.GL873550         C 0 I 3
s mm10.chr17                34354636 5 +  94987271 TGATT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70391148 3 -  72498081 CTA--
i canFam3.chr12            I 2 C 0
s dasNov3.JH569424            497654 5 +    935526 tgcgg
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       82956 9 -    115496 I
e micMur3.chr6               4481662 346 + 123392446 I
e proCoq1.NW_012150019v1      145650 6137 +   1371726 I
e aotNan1.NW_018508875v1      288258 23 +    446445 I
e macNem1.NW_012013344v1      209610 9 +    407600 I
e chlSab2.chr17             39659700 9 +  71996105 I
e cerAty1.NW_012003702v1       81567 9 +    463628 I
e colAng1.NW_012115555v1      704607 9 -   1936607 I

a score=590235.000000
s hg38.chr6_KI270758v1_alt     42853 68 +     76752 TGT-GGGACGGTGGGGTCTGTGTGAGGACCTAACTGG----------------------GGGGTTGCAGA-------------TGAGGCCTC--CATGAAGGCCTT
s panTro5.chr6             142746179 68 - 175400573 TGT-GGGACGGTGGGGTCTGTGTGAGGACCTAACTAG----------------------GGGGTTGCAGA-------------TGAGGCCTC--CATGAAGGCCTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894405 68 - 173848474 TGT-GGGACGGTGGGGTCTGTGTGAGGACCTAACTGG----------------------GGGGTTGCAGA-------------TGAGGCCTC--CATGAAGGCCTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2411937 68 +   2807050 TGT-GGGACGGTGGGGTCTGTGTGAGGACCTAACTGG----------------------GGGGTTGCAGA-------------TGAGGCCTC--CATGAAGGCCTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45704951 68 - 122973662 TGT-GGGACGGTGGGGTCTGCGTGAGGACCTAACTGG----------------------GGGGTTGCAGA-------------TGAGGCCTC--CATGAATGCCTT
i nomLeu3.chr1a            I 3 C 0
s rheMac8.chr4             139335574 68 - 172585720 TGT-GGGTCAGTGGGGTCTGCGTGAGGACCTAACTGG----------------------GGAGTTGCAGA-------------TGAGGCCCC--CATAAATGCCTT
i rheMac8.chr4             I 1 C 0
s macFas5.chr4             138502807 68 + 170955103 TGT-GGGTCAGTGGGGTCTGCGTGAGGACCTAACTGG----------------------GGAGTTGCAGA-------------TGAGGCCTC--CATAAATGCCTT
i macFas5.chr4             I 1 C 0
s macNem1.NW_012013344v1      209619 68 +    407600 TGT-GGGTCAGTGGGGTCTGCGTGAGGACCTAACTGG----------------------GGAGTTGCAGA-------------TGAGGCCCC--CATAAATGCCTT
i macNem1.NW_012013344v1   I 9 C 0
s cerAty1.NW_012003702v1       81576 68 +    463628 TGT-GGGTCAGTGGGGTCTGCGTGAGGACCAAACTGG----------------------GGAGTTGCAGA-------------TAAGGCCTC--CATAAATGCCTT
i cerAty1.NW_012003702v1   I 9 C 0
s chlSab2.chr17             39659709 68 +  71996105 TGT-GGGTCAGTGGGGTCTGCGTGAGGACCTAACTGG----------------------GGAGTTGCAGA-------------TGAGGCCTC--CATAAATGCCTT
i chlSab2.chr17            I 9 C 0
s manLeu1.NW_012101600v1       82965 68 -    115496 TGT-GGGTCAGTGGGGTCTGCGTGAGGACCTAACTGG----------------------GGAGTTGCAGA-------------TGAGGCCTC--CATAAATACCTT
i manLeu1.NW_012101600v1   I 9 C 0
s colAng1.NW_012115555v1      704616 68 -   1936607 TGT-GGGTCAGTGGGGTCTGCGTGAGGACCTAACTGG----------------------GGAGTTGCAGA-------------TGAGGCCCC--CATAAATGCCTT
i colAng1.NW_012115555v1   I 9 C 0
s calJac3.chr4             138664903 90 - 171630274 TGC-GGGACGGTGGGGTCTGCGTGAGGACCTAACTGGGGGGAAGGTGTGGGGGAGTTGGGGGGCTGCAGA-------------TAAGGCTCC--CATGGATGCCTT
i calJac3.chr4             I 3 C 0
s saiBol1.JH378315            219182 90 +   1154217 TGC-GGGACGGTGGGGTCTGCGTGAATACCTAACTGGGGGGAAGGTGTGGGGGAGTTGAGGGGCTGCAGA-------------TAAGGCTCC--CATGAATGCCTT
i saiBol1.JH378315         I 3 C 0
s cebCap1.NW_016107339v1    14038826 90 +  15232693 TGC-GGGATGGTGGCGTCTGCGTGAGGACCTAACTGGGGGGAAGGTGTGGGGGAGTTGGGGAGCTGCAGA-------------TAAGGCTCC--CATGAATGCCTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      288281 90 +    446445 TGC-GGGACAGTGGGGTCTGTGTGAGGACCTAACTGGGGGGAAGGTGTGGGGGAGTTGGGGGGCTGCAGA-------------TAAGGCCCC--CGTGAATGCCTT
i aotNan1.NW_018508875v1   I 23 C 0
s otoGar3.GL873550          15342626 85 -  18854210 TGCAGGGACAGCAG-GTCTGTGCGAGGGCCTAACTGG-----AGACGTCTGTGCACAGACCAGTGTCAGG-------------TGGGGGCTCAGCATGAGTCCC--
i otoGar3.GL873550         I 3 C 0
s mm10.chr17                34354641 70 +  94987271 --T-AGGCCACTGCCAGATGTCAGGTCACCTACCTGCTGGACA----------------GGGCATGGAGC-------------AGGGTCCAG--CCTGCGTGCT--
i mm10.chr17               C 0 C 0
s canFam3.chr12             70391151 69 -  72498081 -------------GGTGCTGTGTGAGGGCCAGTTGGA----------------------GATGGCACAGACTAGTTGTCAAATTGGGCCCAG--TGTTAGTGCCCT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            497659 47 +    935526 cgc-gggccggcgggg-------gaagcccgcgcgggcg--------------------gcgggcgcggg-------------cggcg------------------
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4481662 346 + 123392446 I
e proCoq1.NW_012150019v1      145650 6137 +   1371726 I

a score=1730277.000000
s hg38.chr6_KI270758v1_alt     42921 120 +     76752 GGCTTTCT-GGGGAAGGTGAGAATTGCCAGTGTCATGA-TTTTGTGTGCACGTCTACAGAATTCACAACTGAACCCAGCCAAAGTCCACTTGTCC----CCGGAGTTTCACTGTTGAGAGGATTAT
s panTro5.chr6             142746247 120 - 175400573 GGCTTTCT-GGGGAAGGTGAGAATTGCCAGTGTCATGA-TTTTGTGTGCATGTCTGCAGAATTCACAACTGAACCCAGCCAAAGTCCACTTGTCC----CCGGAGTTTCACTTTTGAGAGGATTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894473 120 - 173848474 GGCTTTCT-GGGGAAGGTGAGAATTGCCAGTGTCATGA-TTTTGTGTGCACGTCTGCAGAATTCACAACTGAACCCAGCCAAAGTCCACTTGTCC----CCGGAGTTTCACTTTTGAGAGGATTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412005 120 +   2807050 GGCTTTCT-GGGGAAGGTGAGAATTGCCAGTGTCATGA-TTTTGTGTGCACGTCTGCAGAATTCACAACTGAACCCAGCCAAAGTCCACTTGTCC----CCGGAGTTTCACTTTTGAGAGGATTAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705019 120 - 122973662 GGCTTTCT-GGGGAAGGTGAAAATTGTCAGTGTCATGA-TTTTGTCTGCACGTCTGCAGAATTCACAGCCGAACCCAGGCAAAGTCCACTTGTCC----CCTGAGTTTCACTTTTGAGAGGATTAT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139335642 120 - 172585720 GGCTTTCT-GGGGAAGGTGAGAATTGCCGGTGTCATGA-TTTTGTCTGCAAGTCTGCAGAATTCACAACCGAACCCAGCCAAAGTCCACTTGTCC----CCTGAGTTTCACTTTTGAGAGGATTAT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138502875 120 + 170955103 GGCTTTCT-GGGGAAGGTGAGAATTGCCGGTGTCATGA-TTTTGTCTGCAAGTCTGCAGAATTCACAACCGAACCCAGCCAAAGTCCACTTGTCC----CCTGAGTTTCACTTTTGAGAGGATTAT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      209687 120 +    407600 GGCTTTCT-GGGGAAGGTGAGAATTGCCGGTGTCATGA-TTTTGTCTGCAAGTCTGCAGAATTCACAACCGAACCCAGCCAAAGTCCACTTGTCC----CCTGAGTTTCACTTTTGAGAGGATTAT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       81644 118 +    463628 GGCTTTCT-GGGGAAGGTGAGAATTGCCGGTGTCATGA-TTTTGTCTGCAAGTCTGCAGAATTCACAACTGAACCCAGCC--AGTCCACTTGTCC----CCTGAGTTTCACTTTTGAGAGGATTAT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39659777 119 +  71996105 GGCTTTCT-GGGGAAGGTGAGAATTGCCGGTGTCATGATTTTTGTCTGCAAGTCTGCAGAATTCATAACTGAACCCAGCC--AGTCCACTTGTCC----CCTGAGTTTCACTTTTGAGAGGATTAT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       83033 120 -    115496 GGCTTTCT-GGGGAAGGTGAGAATTGCCGGTGTCATGA-TTTTGTCTGCAAGTCTGCAGAATTCACAACCGAACCCAGCCAAAGTCCACTTGTCC----CCTGAGTTTCACTTTTGAGAGGATTAT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      704684 120 -   1936607 GGCTTTCT-GGGGAAGGTGAAAATTGCCGGTGTCATGA-TTTTGTCTGCATGTCTGCAGAAATCACAACCGAACCCAGCCAAAGTCCACTTGTCC----CCTGAGTTTCACTTTTGAGAGGATTGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138664993 123 - 171630274 GGCTTTCT-GGGGAAGGTGAGAAGTGCCAGTGTCGTGA--TTTGTCTGCAGGTCTGCGGAATTCACAACTCAACCCAGCCAAAGTCCACTTGTCCAACTCGTGAGTGTCACTTTCAAGAGGATTAT
i calJac3.chr4             C 0 I 415
s saiBol1.JH378315            219272 119 +   1154217 GGCTTTCT-GGGGAAGGTGAGAACTGCCAGTGTCGTGA--TTTGTCTGCGGGTCTGCAGAATTCACAACTGAACCCAGCCAAAGTCCACTTGTGC----CCTGAGTTTCACTTTCGAGAGGATTAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14038916 119 +  15232693 GGCTTTCT-GCGGAAGGTGAGAATTGCCAGTGTCGTGA--TTTGTCTGCAGGTCTGCAGAATTCGCAACTGAACCCAGCCAAAGTCCACTTGTCC----CCTGAGTTTCACTTTCAAGAGGATTAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      288371 119 +    446445 GGCTTTCT-GGGGAAGGTGAGAATTGCCAGTGTCGTGA--TTTGTCTGCAAGTCTGAAAAATTCACAACTGAACCCAGCCAAAGTCCACTTGTCC----CCTGAGTTTCACTTTCGAGAGGATTGC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4482008 120 + 123392446 GGCTTTCT-GGGGAGGGTGGGGAGTGCCAGTGTCACGA-TTCTGGCCGCAGGTCCCGAGAACCCACAGCTGGACCTAGTCAAAGTCCACTTGTCC----CCGGAGTTTCACTTTCGAGAGGATTAC
i micMur3.chr6             I 346 C 0
s proCoq1.NW_012150019v1      151787 120 +   1371726 GGCTTTCC-GGGGAGGGTGAGGAGTGCCAGTGTCACAG-TTTTGTCTGCAGGTCCCGAGAACCCACAGCTGAACCCAGTCAAAGTCCACCTGCCC----TCTGAGTTTCACTTTTGAGAGGATGAC
i proCoq1.NW_012150019v1   I 6137 C 0
s otoGar3.GL873550          15342711 116 -  18854210 GGATTTCTGGGGGAGGAGGATGAGCACCAGCATCACAA-TTTTGTCTGCAGGTCCTGAGAA-CCACAGCACAACC----CAAAGTCCACTTGTCC----TCTGAGTTTCACTTTTAAGCGCCTTAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34354711 108 +  94987271 GGTGTTCT-GAAGA----GATAAGGGTCAACATTATCA-CTGTGTCTAGAAGGCTAGATGAATCAGAACAGAGCC----CAAAGTCCACCTGCCTTCCTTCTGAGTTTCACTTTTGAG--------
i mm10.chr17               C 0 C 0
s canFam3.chr12             70391220 117 -  72498081 GGCTTTCT-GGGCCTGGTGAGGAGTGTTAATGTCACAA-TTTCATCTGCAAGCCTGAAGAACTCATAACGAAACCCAGTCAAAGTCCACTTGTCG-------GAGTTTCACTTTTCTGAGGATTAC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            497706  92 +    935526 ---------ggcAAAGGTGGG---TGCCGGGGTCACCA-TTTCGCCTGCGGGTGTAAAGAACT----------------CAAAGTCCACAGGTGC----CC-GGGTTTCACTTTTGCGGCGAGGAC
i dasNov3.JH569424         C 0 C 0

a score=452507.000000
s hg38.chr6_KI270758v1_alt     43041 32 +     76752 AGCTGTTAGGAGGTGAATGTGCTATTCTGATT
s panTro5.chr6             142746367 32 - 175400573 AGCTGTTAGGAGGTGAATGTGCTATTCTGATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894593 32 - 173848474 AGCTGTTAGGAGGTGAATGTGCTATTCTGATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412125 32 +   2807050 AGCTGTTAGGAGGTGAATGTGCTATTCTGATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705139 32 - 122973662 AGCTGGTAGGAGGCGAATGTGCTATTCTGATT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139335762 32 - 172585720 AGCTGGTAGGAGGTGAATGTGCTATTCTGATT
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138502995 32 + 170955103 AGCTGGCAGGAGGTGAATGTGCTATTCTGATT
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      209807 32 +    407600 AGCTGGTAGGAGGTGAATGTGCTATTCTGATT
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       81762 32 +    463628 AGCTGGTAGGAGGTGAATGTGCTATTCTGATT
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39659896 32 +  71996105 AGCTGGTAGGAGGTGAATGTGCTATTCTGATT
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       83153 32 -    115496 AGCTGGTAGGAGGTGAATGTGCTATTCTGATT
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      704804 32 -   1936607 AGCTGGTAGGAGGTGAATGTGCTATTCCAATT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138665531 32 - 171630274 AGCTGGTAGTAGGTGAGTGTACTATTCTGATT
i calJac3.chr4             I 415 C 0
s saiBol1.JH378315            219391 32 +   1154217 AGCTGGTAGGAGGTGAATGTGCTATTCTGACT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14039035 32 +  15232693 AGCTGGTAGAAGGTGAATGTGCTATTCTGATT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      288490 32 +    446445 AGCAGGTAGGAGGTGAATGTGCTATTCTGATT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4482128 32 + 123392446 GGCTGATAGCAGGTGAATGCGCCATCCTGATT
i micMur3.chr6             C 0 I 696
s proCoq1.NW_012150019v1      151907 32 +   1371726 GATGGATAGCAGGTGCCTGTGCTATTCTGATT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15342827 29 -  18854210 AACTGA---CAGATGACTGTGCTATTCTGACT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34354819 25 +  94987271 ------CAGAAGGTAAATGTGCTGCTCTGAC-
i mm10.chr17               C 0 C 0
s canFam3.chr12             70391337 29 -  72498081 AGCCAGTAGGAGGTGAACACGCTATTCTT---
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            497798 24 +    935526 AGCCGG-GGGAGCTGACCCTGCTCT-------
i dasNov3.JH569424         C 0 C 0

a score=749780.000000
s hg38.chr6_KI270758v1_alt     43073 65 +     76752 TTCGGAATGCA-ATCTCATTTTCACA--GGGCCTCCGGGATTTGGCTCTGCCTTCAACTGGGGTGAGA
s panTro5.chr6             142746399 65 - 175400573 TTCAGAATGCA-ATCTCATTTTCAGA--GGGCCTCTGGGATTTGGCTCTGCCTTCAACTGGGGTGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894625 65 - 173848474 TTCAGAATGCA-ATCTCATTTTCAGA--GGGCCTCTGGGATTTGGCTCTGCCTTCAACTGGGGTGAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412157 65 +   2807050 TTCAGAATGCA-ATCTCATTTTCAGA--GGGCCTCCGGGATTTGGCTCTGCCTTCAACTGGGGTGAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705171 65 - 122973662 TTCAGAATGCA-ATCTCATTTTCAGA--GGGCCTCCGGGATTTGGCTCTGCCTTCAACTGGGGTGAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139335794 65 - 172585720 TTCAGAATGCA-ATCTCATTTTCAGA--GGGCCTCTGGGATTTGGCTCTGTCTTCAGCTTGGGTGAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138503027 63 + 170955103 TTCAGAATGCA-G--TCATTTTCAGA--GGGCCTCCGGGATTTGGCTCTGTCTTCAGCTTGGGTGAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      209839 65 +    407600 TTCAGAATGCA-ATCTCATTTTCAGA--GGGCCTCCGGGATTTGGCTCTGTCTTCAGCTTGGGTGAGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       81794 63 +    463628 TGCAGAATGCA-A--TCATTTTCAGA--GGGCCTCCGGGATTTGGCTCTGTCTTCAGCTTGGGTGAGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39659928 63 +  71996105 TTCAGAATGCA-A--TCATTTTCAGA--GGGCCTCCGGGATTTGGCTCTGTCTTCAGCTTGGGTGAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       83185 65 -    115496 TTCAGAATGCA-ATCTCATTTTCAGA--GGGCCTCCGGGATTTGGCTCTGTCTTCAGCTTGGGTGAGA
i manLeu1.NW_012101600v1   C 0 C 0
s colAng1.NW_012115555v1      704836 65 -   1936607 TTCAGAATGCA-ATCTCATTTTCAGA--GGGCCTCCGGGATTTGGCTCTGTCTTCAGCTTGGGTGAGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138665563 66 - 171630274 TTCATAATGCACATCTTATTTTCAGA--GGGCCTCAGGGATTTGGCTCTGCCTTCAGCTTGGGTGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            219423 62 +   1154217 TTCATAATGCAAAT----TTTTCAGA--CGGCCTCAGGGACTTGGCTCTGCCTTCAGCTCGGGTGAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14039067 65 +  15232693 TTCATAATGCA-ATCTCATTTTCAGA--GGGCCTCAGGGATTTGGCTCTGCCTTCAGCTTGGGTAAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      288522 65 +    446445 TTCATAATGCA-ATCTCATTTGCAGA--GGGCCTCAGGGATTTGGCTCTGCCTTCAGCTTGGGTGAGA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      151939 57 +   1371726 --------CGA-ATCTCATTTTCGGA--GGGCCTCGGGGATTTGCCTCTGCCTTCAGCTTGGGTGAGA
i proCoq1.NW_012150019v1   C 0 I 676
s otoGar3.GL873550          15342856 57 -  18854210 --------GGA-GTCTCTTTTTCAGA--GGGCCTCAGGGATTTGCCTCTGCCTTCAGCTTGGGTGAGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34354844 55 +  94987271 -------TGGA-GCCTCATTTT-AGACTGACCCTCGGGGACTCAACTCTGCCTACAGATTGACA----
i mm10.chr17               C 0 C 0
s canFam3.chr12             70391366 60 -  72498081 -----TTTGGA-ATCTCATGTTCAGGGTGGGCCTCCAGGACTAGGTTTGTGCT--AGTTTAGGTGACA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            497822 27 +    935526 TTCTGGCTGGA-GTCGCGTTTCCAGG--GA--------------------------------------
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4482160 696 + 123392446 I

a score=1472469.000000
s hg38.chr6_KI270758v1_alt     43138 153 +     76752 GGGCTTAAATCC-TCCTTCACCCAAAGTCCTGGAGGAG--------GCCTCCACACTCTCTGGC----TCTCCCACACTCTCTGGCTCTCTGGTGTGTCTTTGATCAGCACACCCCAGGGCTCTGACCTGTTTCTGACCACCTGCTATGTGGATGAA-GATACATCT
s panTro5.chr6             142746464 139 - 175400573 CGGCTTAAATCC-TCCTTCACCCAAAGTCCTGGAGGAG--------GCCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCGGCACACCCCAGGGCTCTGACCTGTTTTTGACCACCTGCTATGTGGATGAA-GATACATCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894690 139 - 173848474 TGGCTTAAATCC-TCCTTCACCCAAAGTCCTGGAGGAG--------GCCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCAGCACACCCCAGGGCTCTGACCTGTTTTTGACCACCTGCTATGTGGATGAA-GATACATCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412222 153 +   2807050 CGGCTTAAATCT-TCCTTCACCCAAAGTCCTGGAGGAG--------GCCTCCACACTCTCTAGC----TCTCCCACACTCTCTGGCTCTCTGGTGTGTCTTTGATTGGCACACCCCAGGGCTCTGACCTGTTTTTGACCACCTGCTATGTGGATGAA-GATACATCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705236 139 - 122973662 CGGCTTAAATCC-TCCTCCACCCAAAGTTCTGGGGGAG--------GCCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCAGCACACCCCAGGGCTCTGACTTGGTTTTGACCACCTGTTATGTGGATGAA-GATACCTCT
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139335859 146 - 172585720 CGGCTTAAATCC-TCCTTCACCCAAAGTCCTGGGGGAGCTGCA-CCGCCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCAGCACACCCCGGGGCTCTGACCTGTTTTTGACCACCTGCTATGGGAATGAA-GATACATct
i rheMac8.chr4             C 0 I 2540
s macFas5.chr4             138503090 146 + 170955103 CGGCTTAAATCC-TCCTTCACCCAAAGTCCTGGGGGAGCTGCA-CCGCCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCAGCACACCCCGGGGCTCTGACCTGTTTTTGACCACCTGCTATGGGAATGAA-GATACATct
i macFas5.chr4             C 0 I 2555
s macNem1.NW_012013344v1      209904 146 +    407600 CGGCTTAAATCC-TCCCTCACCCAAAGTCCTGGGGGAGCTGCA-CCGCCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCAGCACACCCCGGGGCTCTGACCTGTTTTTGACCACCTGCTATGGGAATGAA-GATACATct
i macNem1.NW_012013344v1   C 0 I 2557
s cerAty1.NW_012003702v1       81857 147 +    463628 CGGCTTAAATCC-TCCTTCACCCAAAGTCCTGGGGGAGCTGCAGCCGCCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCAGCACACCCCGGGGCTCTGACCTGTTTTTGACCACCTGTTATGGGAATGAA-GATACATct
i cerAty1.NW_012003702v1   C 0 I 2552
s chlSab2.chr17             39659991 147 +  71996105 CAGCTTAAATCC-TCCTTCACCCAAAGTCCTGGGGGAGCTGCAGCCGCCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCAGCACACCCTGGGGCTCTGACCTGTTTTTGACCACTTGCTATGGGAATGAA-GATACATct
i chlSab2.chr17            C 0 I 3009
s manLeu1.NW_012101600v1       83250 147 -    115496 CGGCTTAAATCC-TCCTTCACCCAAAGTCCTGGGGGAGCTGCAGCCGCCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCAGCACACCCCGGGGCTCTGACCTGTTTTTGACCACCTGCTATGGGAATGAA-GATACATct
i manLeu1.NW_012101600v1   C 0 I 2673
s colAng1.NW_012115555v1      704901 147 -   1936607 CGGCTTAAATCC-TCCTTCACCCAAAGTCCTGGGGGAGCTGCAGCCGCCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCAGCACACCCCAGGGCTCTGACCTGTTTTTGACCACCTGCTATGTGGATGAA-GATGCATCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138665629 146 - 171630274 CGGCTTACCGTC-TCCTTCACCCAAAGTCCTGGGGGAGCTGCAGCCACCTCCACACTCTCTGG------CTCCCACAGT--------------TCTGTCTTTGATCTGCACACCTCGGGACTCTGACCTGTCTTTGACCCCCTGCTATATGGATGAAGGATACATCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            219485 148 +   1154217 CGGTTTACTGTC-TCCTTCACCCAGAGTCCTGTGGGGGCTGCAGCCACCTCCACACTCTCTGGC----TCTCCCACAGT--------------CCTGCCTTTGCTCTGCACACCTCAGGACTCTGACCTGTCTTGGACCCCCTGCTATATGGATGAAGGATACATCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14039132 148 +  15232693 CGGCTTACCGTC-TCCTTCACCCAAAGTCCCGGGGGAGCTGCAGCCACCTCCACAGTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCTGCACACCTCAGAACTCTGACCTATCTTTGACCCCCTGCTCTATGGATGAAGGATACATCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      288587 148 +    446445 CGGTTTACCGTC-TCCTTCACCCAAAGTCCTGGGGGAGCTGCAGCCACCTCCACACTCTCTGGC----TCTCCCACAGT--------------TCTGTCTTTGATCTGCACACCTCAGGACTCTGACCTGTCTTTGACCCCCTGCTTTCTGGATGGAGGATACATCT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15342913 150 -  18854210 CTGCATAAATCCTTCCTTTACCCAAAGCCTGGGGGAAGTGGGA--CACCTCTACCCCCTCTGGCTCTGTCTCCCGTGGT--------------TCTCTCTCAGATCCCTGCACCCTAGAGCTCTGATCTGTCTTTGGACACCTGCT-TGTGGATGAAGGTTACACCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34354899 118 +  94987271 CCATTCAAATCT-TCCTTCACGCAAA---CTGGTGA---------CGCTTCCACTTTCCTTGCC----T--------GC--------------TCCATCACCAGTCACTATGCTCT----------CCTGTCCTTAGACACCTGCTATGTGAATGAAGGACACACTT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70391426 146 -  72498081 CAGCACA-GTCT-CCCTTCACCCAAAGCCAGGGGTCACTGGGGGCTACCTCCACACCATCTGGC----TGTCTCTCAGT--------------TCTCACGCCAGTCAGCAC-CCTCAGGACCCTGACCTCCTTTTGGACACCTTCTGCATGGATGAAGGGTACACCT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            497849  72 +    935526 -------------------------GGGCTTGGGG----------------------CTCTGGC------------AGT--------------CCAGGCTGCCGTCAGCGCACCC----GCACCGG---------GGACTCCTGCCGTGTGGGTGGA-A--------
i dasNov3.JH569424         C 0 C 0
e micMur3.chr6               4482160 696 + 123392446 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I

a score=445349.000000
s hg38.chr6_KI270758v1_alt     43291 89 +     76752 GGGGCCAAGTGAGAAGACCCAGTAGCACCAGGT-TTCGCCCC-AAAGGAGAGAGGGAGACACGTGAGTGGTTTGG--AT--------TCCCTGGTGAAGGA
s panTro5.chr6             142746603 89 - 175400573 GGGGCCAAGTGAGAAGACCCAATAGCACCGGGT-TTCGCCCC-AAAGGAGAGAGGGAGACACGTGAGTGGTTTGG--AT--------TCCCTGGTGAAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894829 89 - 173848474 GGGGCTAAGTGAGAAGACCCAGTAGCACCGGGT-TTTGCCCC-AAAGGAGAGAGGGAGACACGTGAGTGGTTTGG--AT--------TCCCTGGTGAAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412375 89 +   2807050 GGGGCTGAGTGAGAAGACCCAGTAGCACCGGGT-TTTGCCCC-AAAGGAGAGAGGGAGACACGTGAGTGGTTTGG--AT--------TCCCTGGTGAAGGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705375 89 - 122973662 GGGGCCAAGTGAGAAGACCCAGTAGCACCGGGT-TTCACCCC-AAAGGAGAGAGGGAGACACATGAGTGGTTTGG--AT--------TCCCTGGTGAAGGA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705048 89 -   1936607 GGGGCCAAGTGAGAAGACCCAGTAGCACCGGGT-TTCACCCC-AAAGGAGAGAGGGAGACACGTGAGTGGTTTGG--AG--------TCCCTGGTGAAGGA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138665775 87 - 171630274 GGGGCCAAGTGAGAAGACCCAGTAGCACCAGGTGGTCACCCC-AAAGGAGAGAGGGAGACACGTGAATG---TGG--GG--------GCCCTGGTGAAAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            219633 88 +   1154217 GGGGCCAAGTGAGAAGACCCAGTAGCACCAGGTGTTCACCCT-AAAGGAGAGAGGGAGACACGTGAGTG--TTGG--AG--------TCCCTGGTGAAGGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14039280 88 +  15232693 GGGGCCAAGTGAGAAGACCCAGCAGCACCAGGTGTTCACCCC-AAAGGAGAGAGGGAGACACGTGAGTG--TTGG--AG--------TCCCTGGTGAAGGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      288735 87 +    446445 GGGGCCAAGTGAGAAGACCCAGTAGCACCAGGTGTTCACCCC-AAAGGAGAGAGGGAGACACGTGAGTG--TTGA--AG--------TCCC-GGTGAAGGA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15343063 92 -  18854210 GAGACCAGGTAAGAAGACCCTGCAGCCTTGGGT-TTCACCCCTGGAGGAGAGAGGGAGATGTGTGAGCGGTTTGGAAAG--------TCCCTGGTGAAGGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34355017 84 +  94987271 GTGACTGGGTGAGA----CCAACAGCCTCC-AT-TTCACCCT-AAAGGAAAGA--GCAACAGGTGAGTGGCTTGGAGAG--------TCTCTCATGAAGGA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70391572 90 -  72498081 GAGACCCACTGAGAAGACCCAGCAGCTTCTGGT-TTCATCCT-GAAGGAGAGA-AGAGACACGTGAGTGGCTTGATGAG--------TCCCTGGCAGCTGA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            497921 83 +    935526 GAGGTCAAGGCAGGGGA--CAGCAGTCCCGGGC-TCCTCTGC-----------GCGGAGCGGGTGAGTG--TCAG--AGCGCTCCCTCCCCTGGGGAAGGA
i dasNov3.JH569424         C 0 I 138
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4482160 696 + 123392446 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=382265.000000
s hg38.chr6_KI270758v1_alt     43380 96 +     76752 TGGCCACGGGA---------AGCTG-----GGGA--CATTGTCTCAGATTACAGAGTAGGACATACGGACGGAATCAATGTCCTTTAGGGAAATGCTGCCACCTGTTACACT
s panTro5.chr6             142746692 96 - 175400573 TGGCCACGGGA---------AGCTG-----GGGA--CATTGTCTCAGATTAGAGAGTAGGACATACGGACGGAATCAATGTCCTTTAGGGAAATGCTGCCACCTGTTACACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140894918 96 - 173848474 TGGCCACGGGA---------AGCTG-----GGGA--CATTGTCTCAGATTAGAGAGTAGGACATACGGACGGAATCAATGTCCTTTAGGGAAATGCTGCCACCTGTTACACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412464 96 +   2807050 TGGCCACGGGA---------AGCTG-----GGGA--CATTGTCTCAGATTAGAGAGTAGGACATACGGACGGAATCAATGTCCTTTAGGGAAATGCTGCCACCTGTTACACT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705464 96 - 122973662 TGGCCATGGGA---------AGCTG-----GGGA--CATTGTCTCAGATTAGAGAGTAGGACATACGGACAGAATCAACGTCCTTCAGGGAAATGCTGCCACTTGTTACACT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705137 95 -   1936607 CGGCCATGGGA---------AGCTG-----GGGA--CGTTGTCTCAGATTAGAGAGTAGGACATAC-AACAGAATCAATGTCCTTTAGGGAAATGCTGCCGCTTGTTACACT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138665862 85 - 171630274 TGGCCATGGGA---------AGCT------GGGA--CATTGTCTCAGATTAGAAAGTAGGACATATGGACAGAATCAATGTCCTTGAGGGAAACTCTA----------CACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            219721 96 +   1154217 TGGCCACGGGA---------AGCTG-----GGGA--CATTGTCTCAGATTAGAAACTAGGACATGTGGACAGAATCAATGTCCTTGAGGGAAATGCTGCCACTTGCTCCACT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14039368 96 +  15232693 TGGCCACGGGA---------AGCTG-----GGGA--TGTTGTCTCAGATTAGAAAGTAGGACATATGGACAGAATCAATGTCCTTGAGGGAAATGCTGCCACTTGCTACACT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      288822 96 +    446445 TGGCCACGGGA---------AGCTG-----GGGG--CATTGTCTCAGATTAGAAAGTAGGACATATGGACAGAATCAATGTCCTTGAGGGAAATGCTGCCACTTGCTACACT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15343155 74 -  18854210 TGGCTGTGGGA---------AGTCGACTGTAGGG--AAATGTC-----------AGCACCCCGTAGGGG----------------TAGGGAAGTGCTGCTACTTGTAACGCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34355101 80 +  94987271 TGGACATGGGAGTGGGGGTGGGGTG-----GGGAGGAGTCAACTAAGATGAGGAAGTAGG---------TAGAGTCAGCATCCTGTCAGGAAA------------------T
i mm10.chr17               C 0 C 0
s canFam3.chr12             70391662 92 -  72498081 TGACCATGGGA---------AATTG-----GGGA--AGTCGACTAAGATGAGGAAGTGGAGCATGTGGACAG--TCA--GCCCCCACAGGAAACTCTGCTACTTGCCATTAT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4482160 696 + 123392446 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            498004 138 +    935526 I

a score=162133.000000
s hg38.chr6_KI270758v1_alt     43476 42 +     76752 GCCTCcc-ac-------t--tatatttatatccca--ctgtgcagtcttcaaag
s panTro5.chr6             142746788 42 - 175400573 GCCTCcc-ac-------t--tatatttatatccca--ctgtgcagtcttcaaag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895014 42 - 173848474 GCCTCcc-ac-------t--tatatttatatccca--ctgtgcagtcttcaaag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412560 42 +   2807050 GCCTCcc-ac-------t--tatatttatatccca--ctgcgcagtcttcaaag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705560 49 - 122973662 GCCTCCC-ACTTATATGt--tatatttatatccca--ctgtgcagtcttcaaag
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705232 49 -   1936607 GCCTCCC-ACTTATATGt--tatatttatatcccc--ctgtgcagtcttcaaag
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138665947 46 - 171630274 GCCTCCC-ACTTGTATGt--tacattgatat-cca--ccgtgcag--gtcagag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            219817 47 +   1154217 GCCTCCC-ACTTATATGt--tacatttatatccca--ctatgcag--gtcagag
i saiBol1.JH378315         C 0 I 1
s cebCap1.NW_016107339v1    14039464 47 +  15232693 GTCTCCC-ACTTATATGt--tacatttatatccca--ctgtgcag--gtcagag
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      288918 47 +    446445 GCCTCCC-ACT--TATGt--tacatttatatccca--ctgtgcagtcttcagag
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15343229 53 -  18854210 GCCTTCC-ACCTATACATTGTGTACTTATATCCCATCCTATGTATttttcaaag
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34355181 42 +  94987271 GGCTCTT-ACT------T--CCTGTTGATCT-CCA--CTGCACATTTTTTAGAG
i mm10.chr17               C 0 I 126
s canFam3.chr12             70391754 50 -  72498081 ACCTTCCAACTTTCATCA--GATACTTGTACCCCA--CTCCATGTTTTTCAAAG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            498142 42 +    935526 GCCACCC-GG-------C--CCCGTTTACGCGGCA--CTGGATATTTTTCAGAA
i dasNov3.JH569424         I 138 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4482160 696 + 123392446 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1189571.000000
s hg38.chr6_KI270758v1_alt     43518 258 +     76752 tgcgatcgtagcccatttgaccctcacagtgttctcgtgaagcaggctgagTGAGGAAGAAGCACGAAATTAAAAACAAGAAAACCAGGATCACATT-TTCATTTGTCATGGATGATGTGGGGCATGTGTCCCTGAGCCTTAACGTCTTCTTCTGTCACATGGTCATGACACAGCTTGGAAAACG-----Ttaggatgattgtctccaccacacagcagagaaaatacaggctcaagaaagtaaaga-aagatgtccaaggtcac
s panTro5.chr6             142746830 258 - 175400573 tgcgattgtagcccatttgaccctcacagtgttctcgtgaagcaggctgagTGAGGAAGAAGCACGAAATTAAAAACAAGAAAACCAGGATCACATT-TTCATTTGTCCTGGATGATGTGGGGCATGTGTCCCTGAGCCTTGACGTCTTCTTCTGTCACATGGTCATGACACAACTTGGAAAACG-----Ttaggatgattgtctccaccacacagcagagaaaatacaggctcaagaaagtaaaga-aagatgtccaaagtcac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895056 258 - 173848474 tgcgattgtagcccatttgaccctcacagtgttctcgtgaagcaggctgagTGAGGAAGAAGCACGAAATTAAAAACAAGAAAACCAGGATCACATT-TTCATTTGTCATGGATGATGTGGGGCATGTGTCCCTGAGCCTTAACGTCTTCTTCTGTCACATGGTCATGACACAGCTTGGAAAACG-----Ttaggatgattatctccaccacacagcaaagaaaatacaggctcaagaaagtaaaga-aagatgtccaaggtcac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412602 258 +   2807050 tgcgattgtagcccatttgaccctcacagtgttctcatgaagcaggctgagTGAGGAAGAAGCACTAGATTAAAAACAAGAAAACCAGGATCACATT-TTCATTTGTCATGGATGATGCGGGGCCTGTGTCCCTGAGCCTTGACGTCTTCTTCTGTCACATGGTCATGACACAGCTTGGAAAACG-----Ttaggatgattgtctccaccacacagcagagaaaatacaggctcaagaaagtaaaga-aagatgtccaaggtcac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705609 259 - 122973662 tgcgattgtggcccatttgaccctcacagtgttcctgtgaagcaggctgagtgaggaagaagcactagattaaaaacaagaaaaccaggatcaTATTATTCATTTATCATGGATGATGTGGGGCATGTGTCCCTGAGCCTTGACGTCTTCTTCTGTCACAAGctcatgacacagctgggaaaaca-----ttaggatgattgtctccaccagacagtagagaaaatagaggctcaagaaagtaaaga-aaaatgtccaaggtcac
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705281 258 -   1936607 tgcgactgtagcccatttgaccctcacagtgttcttgtgaagcaggctgagtgaggaagaagcaccagattaaaaacaagaaaaccaggatcaCATTATTCATTTGTCATGGATGATGTGGGGCTTGTGTCCCTGAGCCTTGACGTCCTCTTCTGTCACATGCTCATGGCACAGCTTGGTAAACA-----TTAAGAt-attgtctccaccagacagtagagaaaatagaggctcaaggaagtaaaga-aagatgtccaaggtcac
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138665993 258 - 171630274 tgccattacagcccatttgatcctcacagtgttcttgtgaagcaggctgagTGAGGAAGAGGCACTAGATTAAAAACAAGAAAACCAGGTTCACATTATTCATTTGTCTTGGGTGATGTGGGGCT--CGTCTCTGGGCCTTGATGTCCTCCTCGGTCACGTGGTCATGACATCGCTGGGCCAACG-----Ttacgatgattgtctccagcagacagtagagaaaatggaggcccaagaaagtaaagtaaaggtgtccaaggtcac
i calJac3.chr4             C 0 I 30
s saiBol1.JH378315            219865 257 +   1154217 tgccattgcagcccatttgatcctcacagtgttcttgtgaagcaggcTAAGTGAGGAAGAGGCACTAGACTAAAAATAAGAAAACCAGGATCACATTATTCATTTGTCTTGGGTGGTGTGGGGCT--TGTCCCTGAGCCTCGATGTCCTCTTCAGTCACATGGTCATGACACAGCTGGGGAAACG-----Ttaggatgattgtctccaccagacagttgagaaaatggaggctcaagaaagtaaagt-aagatgtccaaggtcac
i saiBol1.JH378315         I 1 C 0
s cebCap1.NW_016107339v1    14039511 257 +  15232693 tgccattacagcccatttgatcctcacagtgttcttgtggagcaggcTAAGTGAGGAAGAGGCACTATATTAAAAACAAGAAAACCAGGATCACATTACTCATTTGTCTTGGGTGATGTGGGGCT--TGTCTCTGAGCCTTGATGTCCCCTTCAGCCACATGGTCATGACATAGCGTGGGAAACG-----TTTGGatgattgtctccaccagacagtagagaaaatggaggctcaagaaagtaaaat-aagatgtccaagatcac
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      288965 257 +    446445 tgccattacagcccatttgatcctcacagtgttcttgtgaagcaggctaagtgaggatgaggcactagattaaaaacaagaaaaccaggatcaCATTATTCATTTGTCTTGGGTGATGTGGGGCT--TGTCTCTGAGCCTTGATGTCCTCTTCAGTCACATGGTCGTGACATAGCTCGGGAAACG-----Ttaggatgatggtctccaccagacagtagagaaaatggaggctcaagaaagtaaagt-aagatgtccaaggtcac
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15343282 241 -  18854210 cactatcctagctcatttgatcctcacagggttcctgcaaagctggcagggTGTGGAACAGGCTCTAGATTACAAATTTAAAAACCAGGATGGCATTATTCCTTTGTCT------------------GGtctctgagccttgatttcctcatctgtcacctggtgatgacaCAGTTAGAAAAATG-----TTAGGATGATGGTCTCCGTCAGAGAGGAGAGAAACTAGAGGTTTAGCAAAATAAAGT-AAAATGTCCTATGTCAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70391804 234 -  72498081 -TCTGCCATAGCTTATGTGATCCTTATAGTATTGCTGTGCAGTGGGAGGGGTGAGG-----GCACTAGATTACAACTCAGAAAAGTAGGCTCATGTTATTCATTTGTCATGCATGTTGTTGTGCTTGTGTCTCTGGGCCTCA-----CTTGTGTGTCATGTGGTGATGATACAGCTGAGAAAATG-----TTAGG--GAT-----------GAGAGGAGGGAAAGGAGAGTTTCAAGAAAATAAAAG-GAGAT-TCTCAGGTCAC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            498184 244 +    935526 TGCTGCCACATTCC-TTTGATTTCCA-----TTTCTGTGACGCCGGCTGGGTGAGGAAG-GGCTCTGGATTAAAAATCAGAAAATCAGGATCAAGTTAGTCGTTTGTCATGTATGCTCTTGGCGTTGTGTCCCTGAGCCGTGATGTCCT-GTCCATCACATGGTGGTGACA--GCCAGAAAAACTGTTTCTCGGGACAGCTGTCACCATCAG--AGGTGAGAAAGTAGAGGTTTAAGGAAGT------GAGATGCCCAAGGT---
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4482160 696 + 123392446 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=4095.000000
s hg38.chr6_KI270758v1_alt     43776 1 +     76752 a
s panTro5.chr6             142747088 1 - 175400573 a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895314 1 - 173848474 a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412860 1 +   2807050 a
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705868 1 - 122973662 a
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705539 1 -   1936607 a
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            220122 1 +   1154217 a
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14039768 1 +  15232693 a
i cebCap1.NW_016107339v1   C 0 I 54
s aotNan1.NW_018508875v1      289222 1 +    446445 a
i aotNan1.NW_018508875v1   C 0 I 34
s canFam3.chr12             70392038 1 -  72498081 A
i canFam3.chr12            C 0 I 4
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4482160 696 + 123392446 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I
e calJac3.chr4             138666251 30 - 171630274 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15343523 0 -  18854210 C
e dasNov3.JH569424            498428 0 +    935526 C

a score=-6944.000000
s hg38.chr6_KI270758v1_alt     43777 21 +     76752 caCACACA--------CACACAA---AAACCC
s panTro5.chr6             142747089 16 - 175400573 caCACAAA-------------AA---AAACTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895315 19 - 173848474 caCACACA----------CACAA---AAACCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412861 19 +   2807050 caCACACA----------CACAA---AAACCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705869 20 - 122973662 caCATACA----------CAAAA--GAAAACC
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705540 29 -   1936607 caCACACACGCGCGCACACACAC---AAACCC
i colAng1.NW_012115555v1   C 0 C 0
s saiBol1.JH378315            220123 24 +   1154217 -aaaaaaa----ttaatttaaaa---aaaatt
i saiBol1.JH378315         C 0 I 4
s canFam3.chr12             70392043  8 -  72498081 TAAACACA------------------------
i canFam3.chr12            I 4 C 0
s dasNov3.JH569424            498428 15 +    935526 ----------------CCCAAAAGGGGAGCT-
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4482160 696 + 123392446 I
e cebCap1.NW_016107339v1    14039769 54 +  15232693 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I
e aotNan1.NW_018508875v1      289223 34 +    446445 I
e calJac3.chr4             138666251 30 - 171630274 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15343523  0 -  18854210 C

a score=14862.000000
s hg38.chr6_KI270758v1_alt     43798 8 +     76752 AATTCACT
s panTro5.chr6             142747105 8 - 175400573 AATTCACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895334 8 - 173848474 AATTCACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412880 8 +   2807050 AATTCACT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705889 8 - 122973662 AATTCACT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705569 8 -   1936607 AATTCACT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138666281 8 - 171630274 aatCTGCC
i calJac3.chr4             I 30 C 0
s saiBol1.JH378315            220151 8 +   1154217 aattttCC
i saiBol1.JH378315         I 4 C 0
s otoGar3.GL873550          15343523 1 -  18854210 ------C-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70392051 8 -  72498081 AAGTCACC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            498443 8 +    935526 AAGTCTCC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4482160 696 + 123392446 I
e cebCap1.NW_016107339v1    14039769 54 +  15232693 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I
e aotNan1.NW_018508875v1      289223 34 +    446445 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=55406.000000
s hg38.chr6_KI270758v1_alt     43806 11 +     76752 TTGTCTCCTAG
s panTro5.chr6             142747113 11 - 175400573 TTGTCTCCTAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895342 11 - 173848474 TTGTCTCCTAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412888 11 +   2807050 TTGTCTCCTAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705897 11 - 122973662 TTGTCTCCTAG
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705577 11 -   1936607 TTGTCTCCTAG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138666289 11 - 171630274 TTGTCACCTAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            220159 11 +   1154217 TTGTCTCCTAG
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      289257 11 +    446445 TTGTCTGCTAG
i aotNan1.NW_018508875v1   I 34 C 0
s otoGar3.GL873550          15343524 11 -  18854210 TTGAGTCCTAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70392059 10 -  72498081 -TGTCTTCCAG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            498451 11 +    935526 TTGTCTCCTAG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4482160 696 + 123392446 I
e cebCap1.NW_016107339v1    14039769 54 +  15232693 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=149814.000000
s hg38.chr6_KI270758v1_alt     43817 29 +     76752 AAATCTTATTTTA----GCTTT--CTCT--ATAAAAA-
s panTro5.chr6             142747124 29 - 175400573 AAATCTTATTTTA----GCTTT--CTCT--ATAAAAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895353 29 - 173848474 AAATCTTATTTTA----GCTTT--CTCT--ATAAAAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412899 29 +   2807050 AAATCTTATTTTA----GCTTT--CTCT--ATAAAAA-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705908 29 - 122973662 AAATCTTATTTTA----GCTTT--CTCT--ATAAAAA-
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705588 29 -   1936607 AAATCTCATTTTA----GCTTT--CTCT--ATAAAAA-
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138666300 29 - 171630274 AAATCTTATTTTA----GCTTT--CTCT--ACAAAAA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            220170 29 +   1154217 AAATCTTATTTTA----GCTTT--CTCT--ACAAAAA-
i saiBol1.JH378315         C 0 I 287
s cebCap1.NW_016107339v1    14039823 29 +  15232693 AAATCTTATTTTA----GCTTT--CTCT--ACAAAAA-
i cebCap1.NW_016107339v1   I 54 C 0
s aotNan1.NW_018508875v1      289268 29 +    446445 AAATCTTATTTTA----GTTTT--CTCT--ACAAAAA-
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15343535 30 -  18854210 AACTCTTCTTTT-----GCTTT--CTCTTCATAAAAA-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70392069 35 -  72498081 AATTCTTATTTTACTTTGCTTT--CTCTCTATAAAAA-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            498462 35 +    935526 AAGTCTTATTTTATTT-GCTTCTACTCT--AGTAAAAG
i dasNov3.JH569424         C 0 I 4
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4482160 696 + 123392446 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=21539.000000
s hg38.chr6_KI270758v1_alt     43846 4 +     76752 TGTA
s panTro5.chr6             142747153 4 - 175400573 TGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895382 4 - 173848474 TGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412928 4 +   2807050 TGTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705937 4 - 122973662 TGTG
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705617 4 -   1936607 TGTA
i colAng1.NW_012115555v1   C 0 I 318
s calJac3.chr4             138666329 4 - 171630274 TGTA
i calJac3.chr4             C 0 I 310
s saiBol1.JH378315            220486 4 +   1154217 TGTT
i saiBol1.JH378315         I 287 C 0
s cebCap1.NW_016107339v1    14039852 4 +  15232693 TGTA
i cebCap1.NW_016107339v1   C 0 I 339
s aotNan1.NW_018508875v1      289297 4 +    446445 TGTA
i aotNan1.NW_018508875v1   C 0 I 313
s otoGar3.GL873550          15343565 4 -  18854210 TGTG
i otoGar3.GL873550         C 0 I 2
s canFam3.chr12             70392104 4 -  72498081 TGTG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            498501 4 +    935526 TGTT
i dasNov3.JH569424         I 4 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4482160 696 + 123392446 I
e proCoq1.NW_012150019v1      151996 676 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1202844.000000
s hg38.chr6_KI270758v1_alt     43850 180 +     76752 TT-----AACATATGATAAACTATAGCTGTTTTTAATGTCTACA---TAG----ATAC--------ATAAGCTTTCGACTTC-------GTGAACTAAGTTAATTTATTCTTACCAGTCAGTTA----------------------CTATGGCTGCTTGGCATTTTGAGGAGC--AACATTTGAGG-CTTTTAC-TGAAAAAA-----G--------TTCTAATGACCCATGATACATAGTAATTT
s panTro5.chr6             142747157 185 - 175400573 TTGTTTTAACATATGATAAACTATAGCTGTTTTTAATGTCTACA---TAG----ATAC--------ATAAGCTTTCGACTTC-------GTGAACTAAGTTAATTTATTCTTACCAGTCAGTTA----------------------CTATGGCTGCTTGGCATTTTGAGGAGC--AACATTTGAGG-CTTTTAC-TGAAAAAA-----G--------TTCTAATGACCCATGATACGTAGTAATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895386 185 - 173848474 TTGTTTTAACATATGATAAACTATGGCTGTTTTTAATGTCTACA---TAG----ATAC--------ATAAGCTTCCGACTTC-------GTGAACTAAGTTAATTTATTCTTACCAGTTAGTTA----------------------CTATGGCTGCTTGGCATTTTGAGGAGC--AACATTTGAGG-CTTTTAC-TGAAAAAA-----G--------TTCTAATGACCCATGATACGTAGTAATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2412932 185 +   2807050 TTGTTTTTACATATGATAAACTATAGCTGTTTTTAATGTCTACA---TAG----ATAC--------ATAAGCTTCCGACTTC-------GTGAACTAAGTTAATTTATTCTTACCACTTAGTTA----------------------CTATGGCTGCTTGGCATTTTGAGGAGC--AACATTTGAGG-CTTTTAC-TGAAAAAA-----G--------TTCTAATGACCCATGATACGTAGTAATTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45705941 185 - 122973662 TTGTTTTAACATATGATAAACTATAGCTGCTTTTAATGTCTGCA---TAG----ATAC--------ATAAGCTTCCAACTTC-------ATGAACTAAGTTAATTTATTCCTACCACTTAGTTA----------------------CTATGGCTACTTGGCATTTTGAGGAGC--AACGTTTGAGG-CTTTTAC-TGAAAAAA-----G--------TTCTAATGACCCATGATACATAGTAATTT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      705939 180 -   1936607 -----TTAACATATGATAAACTATAGCTGTTTTTAATGCCTACA---TAG----ATAC--------ATAAGCTTCCAACTTC-------CTGAACTAAGTTAATTTATTCTTACCACTGAGTTA----------------------CTGTGACTActtggcattttgaggagc--aacatttgagg-cttttac-tgaaaaaa-----a--------ttctaatgacccatgatatgtagtaattt
i colAng1.NW_012115555v1   I 318 C 0
s calJac3.chr4             138666643 187 - 171630274 -----TTAACATATGATAAACTACAGCTGTTTTTAATGTCTACA---CAG----ACAT--------ATAAGCTTCCAACTTCATGAGCTGTGAACTAAATTAACTTATTCTCACCACTTAGTTA----------------------CTGTGGTTACTTGGCATTTTGAGGAGT--AACATTTGAGG-CTTTTAC-TGAAAAAA-----A--------TTCTAATGACCTATGATAGGTAGTAATTT
i calJac3.chr4             I 310 C 0
s saiBol1.JH378315            220490 187 +   1154217 -----TTAACATATGATAAACTATAGCTGTTTTTAATGTCTGCA---TAG----ATAC--------ATAAGTTTCCAACTTCATGAACTGTGAACTAATTTAACTTATTCTCACCACTTAGTTA----------------------CTATGGTTACTTGGTATTTTGAGGAGT--AATATTTGAGG-CTTTTAC-TGAAAAAA-----A--------TTCTAATGACCCGTGATACGTAGTAATTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14040195 191 +  15232693 -----TTAACATATGATAAACTACAGCTGTTTTTAATGTCTACA---TAGATATATAT--------ATAAGCTTCCAACTTCGTGAACTGTGAACTAAATTAACTTATTCTCACCACTTAGTTA----------------------CTATGGTTActtggcattttgagaagt--aacatttgagg-cttttac-tgaaaaaa-----a--------ttctgatgacccatgatacgtagtaattt
i cebCap1.NW_016107339v1   I 339 C 0
s aotNan1.NW_018508875v1      289614 187 +    446445 -----TTAACATATAATAAACTATAGCTGTTTTTAACATCTACA---TAG----ATAT--------ATAAGCTTCCAACTTCGTGAACTGTGAACTAAATTAATTTATTCTCACTACTTAGTTA----------------------CTATGGCTACTTGGCATTTTGAGGAGT--AACATTTGAGG-CTTTTAC-TGAAAAAA-----A--------TTCTAATGATCCATAATACGTAGTAATTT
i aotNan1.NW_018508875v1   I 313 C 0
s micMur3.chr6               4482856 178 + 123392446 -----TTAACATACAATAAACTATAGTTGTTTTTAAGGTCTATA---TAG----ATAC--------ATAAGCTTCAAACTTC-------GTGAACTG----AATTTATTCTCACCACTTAATTG----------------------CTATGGCTATTTTGCATTTTGAGGATT-TAACATTTAAGG-CTCTTAAATGAAAAAA-----A--------TCCTAATGACCCATGATATGtagtaattt
i micMur3.chr6             I 696 I 35
s proCoq1.NW_012150019v1      152672 178 +   1371726 -----TTAACATATGATAAACTATAGCCGTTTTTTAGGTCTGTA---TAG----ATAC--------ATAAGCTTCAAACTTC-------GTGAACTG----AATTTATTCTCGCCACTTAATTA----------------------CTATGGCTATttggcattttgaggatt-taacatttaagg-cttttaaaagaaaaaa-----a--------tcctaatgacccatgatatgtagtaattt
i proCoq1.NW_012150019v1   I 676 C 0
s otoGar3.GL873550          15343571 189 -  18854210 -----GTTTCATAGGATAAGCTGTAGCTG-TTTTAAAGTCTATATTGTGG----ATACATATACGTATAAGCGTCTCACCTC-------ATGAACTG----ACTTTATTCTCGCCACTTCCTAA----------------------CTATAGCTATTTGTCATTTTGAGGATTAAAATATTCTGGG-CTCTTACATGAAAAAA-----A--------TTCTAATGACGCAGGATATGTAGTGATTT
i otoGar3.GL873550         I 2 C 0
s canFam3.chr12             70392108 190 -  72498081 -----TTAACATATAATCAATTATATCTATTTTTAAAATTAATA---CAG----ATAT--------ATAAACTTCAAATTTT-------GTGAACTTAATAAATTTATTCTCACCAGGTTATTA----------------------CTgtggtcacttggcattttgagtatt-taacatttgaggttttttac-tggaaaaa-----aaaccccacctctaatgacccatgacatatagtaattt
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            498505 208 +    935526 -----TTAACCTATGATAAACTATAGCTGTTTTTTGAGGCTACG---TAG----ATAT--------ATAAACTTCATACTTC-------ATAAACTGAGCACATTTGTTCTCACCAGTTAATTAACATTTTAAAATAAATCAAATGCTGTAGCTACTTGACATTTTATGTTTT--GACATTTGAGG-CTTTTAACTGAAAAAAGTAGGA--------TCCTAATGATCTATGGCATACAGTAATTT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=18129.000000
s hg38.chr6_KI270758v1_alt     44030 3 +     76752 GCA
s panTro5.chr6             142747342 3 - 175400573 GCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895571 3 - 173848474 GCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2413117 3 +   2807050 GCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45706126 3 - 122973662 GCA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      706119 3 -   1936607 gca
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138666830 3 - 171630274 GAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            220677 3 +   1154217 GCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14040386 3 +  15232693 gca
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      289801 3 +    446445 GCG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      152850 3 +   1371726 gta
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15343760 3 -  18854210 GTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70392298 3 -  72498081 gta
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            498713 3 +    935526 GCA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4483034 35 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1842471.000000
s hg38.chr6_KI270758v1_alt     44033 290 +     76752 ATTTTCTTTGATATGAGTTTTAGCAGTGCAGG-ATAGGCCTTGAAATTCAGAATTGTTCATCATCTAATGCCTAAACATAAGCTACCACTTAT-------TATTACAATTTAACACTTATAC--TTTATCCAGAAAATTAAATTAAATTAAACATGGGTTTTTGAGAATTCGATGATACATTTGCATATTAGATCATATATCTTGACAACACCAAAATTTACTATATTTAATAGGA---ACAACAGTTTCAGAAGATTCTT-GCATTACATCCAAATAGTAAAACGGAGGGGTCAAAAGCTTAT--------------------------
s panTro5.chr6             142747345 290 - 175400573 ATTTTCTTTGATATGAGTTTTAGCAGTGCAGG-ATAGGCCTTGAAATTCAGAATTGTTCATCATCTAATGCCTAAACATAAGCTACCACTTAT-------TATTACAATTTAATACTTATAC--TTTATCCAGAAAATTAAATTAAATTAAACATGGGTTTTTGAGAATTTGATGATACATTTGCATATTAGATCATATATCTTGACAACACCGAAATTTACTATATTTAATAGGA---ACAGCAGTTTCAGAAGATTCTT-GCATTACATCCAAATAGTAAAACGGAGGGGTCAAAAGCTTAT--------------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895574 290 - 173848474 ATTTTCTTTGACATGAGTTTTAGCAGTGCAGG-ATAGGCCTTGAAATTCAGAATTGTTCATCATCTAATGCCTAAACATAAGCTACCACTTAT-------TGTTACAATTTAACACTTATAC--TTTATCCAGAAAATTAAATTAAATTAAACATGGGTTTTTGAGAATTTGATGATACATTTGCATATTAGATCATATATCTTGACAACACCAAAATTTACTATATTTAATAGGA---ACAGCAGTTTCAGAAGATTCTT-GCATTACATCCAAATAGTAAAATGGAGGGGTCAAAAGCTTAT--------------------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2413120 290 +   2807050 ATTTTCTTTGATATGAGTTTTAGCAGTGCAGG-ATAGGCCTTGAAATTCAGAATTGTTCATCATCTAATGCCTAAACATAAGCTACCACTTAG-------TATTACAATTTAACACTTATAC--TTTATCCAGAAATTTAAATTAAATTAAACATGGGTTTTTGAGAATTTGATGATACATTTGCATATTAGATCATATATCTTGACAACACCAAAATTTACTATATTTAATAGGA---ACAGCAGTTTCAGAAGATTCTT-GTATTACATCCAAATAGTAAAATGGAGGGGTCAAAAGCTTAT--------------------------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45706129 290 - 122973662 GTTTTCTTTGATGTGAGTTTTAATAGTGCAGG-ATAGGACTTGAAATTCAGAATTGTTCATCATCTAATGCCTAAACATAAGCTACCACTTAT-------TATTACAATTTAACACTTATAC--TTTATCCAGAAAATTAAATTAAATTAAATATGGGTTTTTGAGAATTTGATGATACATTTGCATATTAGATCATATATCTTGACAACACCAAAATTTACTATATTTAATAGGA---ACAGCAGTTTCAGAAGATTCTT-GCATTACATCCAAATAGTAAAACGGAGGGTTCAAAAGCTTAT--------------------------
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      706122 280 -   1936607 attttctttgatatgagttttagtagtgcAGG-ATAGGCCTTGAAATTCAGAATAGTTCATCATCTAATACCTAAACATAAGCTACCACTTAT-------TACTACAATTTAACACTTATAC--TTTATCCAGAAAATTAAAT----------ATAGGTTTTTGAGAATTTGATGATACATTTGCATATTAGATCATATATCTTGATGACACCAAAATTTACTATATTTAATAGGA---ACAGCAGTTTCCAAAGATTCTT-GCATTACATCCAAATAGTAAAACAGAGGGGTCAAAAGCTTAT--------------------------
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138666833 273 - 171630274 ATTTTCTTTGAAATGAACTTCAGTAGTGCAGG-ATGGGCCTTGAAATCCAGAATTGTTCATCATCTAATGCCTAAACATAAGTTGTCACTTAT-------TGTTACAATTTAACAC--------TTTATCCAGAAAATTAAATTAA-------ATGAGTTTATGAGAATTTGATGATACATTTGCATATTAGATCATGTATCTTG---ACATCAAAATTTACTATATTTAATAAGA---ACAGCGGTTTCAGAAGATTCTT-GCACTACATCCAAATGGT-AAACAGAGGGTTCAAAAGCTTAT--------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            220680 283 +   1154217 ATTTTCTTTGAAATGAATTTTAGTAGTGCAGG-ATGGGCCTCGAAATCCAGAATT-TTAATCATCTAATGCCTAAACATAAGCTGCCACTTAC-------TGTTACACTTTAACAC--ATACTTTTTATCCAGAAAAATAAATTAAAT-----ATGAGTTTATGAGAATTTGATGATACGTTTGCATATTAGATCATATATCTTGACAACACCAAAATTTACTATATTTAATAAGA---ACAGCAGTTTCAGAAGATTCTT-GCACTACATCCAAATGGTAAAACAGAGGGTTC-AAAGCTTAT--------------------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14040389 281 +  15232693 attttctttgaaatgaatttTAGGAGCGCAGG-GTGGGCCTTGAAATCCAGAATTGTTAATCATCTAATGCCTAAACATAAGCTGCTAATTAT-------TGTTACAATTTAACAC--ATAC--TTTATCCAGAAAATTAAATTAA-------ATGAGTTTATGAAAATTTGATGATACATTTGCATATTAGATCATATATCTTGACAACACCAAAATGTACCGTATTTAATAAGA---ACAGCAGTTTCAGAAGATTCTT-GCACTACATCCAAATGGTAAAACAGAGGGTTCAAAAGTTTAT--------------------------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      289804 283 +    446445 ATTTTCTTTGAAATAAATTTTAGTAATGCAGG-ATAGGCCTTGAAATCCAGAATTGTTAATCATTTAATGCCTAAACATAAGCTACCACTTAT-------TGTTACAATTTAACAC--ATAC--TTTATCCAGAAAATTAAATTAAAT-----ATGAGCTTATGAGAATTTGATGATACATTTGCATATTAGATCATATGTCTTGACAACACCAAAATTTACTATATTTAATAAGA---ACAGCAGTTTCAGAAGGTTCTT-GTACTACATCCAAATGGTAAAACAGAGGGTTCAAAAGCTTAT--------------------------
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4483069 285 + 123392446 atttTATTTAATATGAATTTTAGCAGTGCAGG-ATAAGCCTTGAAATTCAGAATCGTTATTCACCTAATGCCTAAACATAGACTACCACTTAG-------TGTTGCCTTCTAACACATACAC--TTCACCCAGAAAATTAAATCAAAT-----ATGGGATTTTAAGAATTTGATGATACATCTACATATTAGGTCATATATCTTGACAGTAACAAAGTTTACCACGTTTAATAAGA---ATAGCAGTTTCAGAAGATTATT-GCTCTACATTCAAATGGTTAAACAGAGATGTCAAAAGCTTAT--------------------------
i micMur3.chr6             I 35 I 746
s proCoq1.NW_012150019v1      152853 285 +   1371726 gttttctttgatatgaattttagtagtgcAGG-ATAAGCCTTGAAATTCAGAATTGTTATTCACCTAATGCCTAAACATAATCTACCACTTAT-------TGTTGCATTCTAACACATACAT--TTCATCCAGAAAATTAAACCAAAT-----ATGGGATTTTAAGAATTTGATGATACATCTACATACTAGGTCATATATCTTGACATTAACAAAATTTGCCACATTTAATAAGA---ATAACAGTTTCAGAAGACTCTT-GCTCTACATTCAAATGGCAAAACAGAGATGTCAAAAGCTTAT--------------------------
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15343763 282 -  18854210 ATTTTCATCAATATGAGTTTTAGTAGTGCAAG-GTAGGCCTTAAAATTCAGAATTGTTATTCACCTAATGCCTAAACAGAAACTCTCCCTTAT-------TGTTTCATTCTAATACTTACAC--TTCACCCAGAAAATGAAATTAAAT-----ATGGGA-GTTGAGAATTTGATAATACATCTACACATTAGATCCTATATCTTGACATTAACAAAGTTTA-CACATTTAATAAGA---ATAGCAGTTTCAGAAGATTCTT-GCTCTATATTCAAATAGTACAACAGGGATGTC-AAAGCTTAC--------------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70392301 254 -  72498081 agtttATTTGGTAGTAATTGTAACAGTG---------ACCTTGGAATTCAGAATTGTTATTCA-------CCTCAACACATGCTACCACTTATCACTCACCATTCCATCTTAACAT-TAGAC--TTTATTCAGAAAATTAAATGAAAC-----ATGGGTTTTTGAACATTCAATGATATATATACATATTAGATCACATTTCTTGACAATACCCAACTTTACCATATTC------------------------TGATTCTC-AGCCTATATTCAAATAGTAAAATAGAAATGTCAAAAGCCTT---------------------------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            498716 307 +    935526 ATTTTCCTTGACATGAGCTTTTGTAGTTCATGCATAGACCTTGGTATTCAGAATTTGTCATTTACCTATGCCTAAAATCAAGC---AAGTTAT-------TGTTGCATCTTAATACAGGTAC--TTTATTCAGAAAATTAAAT----------GTGCATTTTTGAGAATTTGAAGATTCACATACAT-TTAGATCATATTCCTCATCAATATCACAGCTTATCATATTTAATACTATCCATGGCAGTTTCAGAAGACTCTTGGTCTTGCATTCAAATGGTGAAATAAAGATGCCAAGAGCTTACAATGAAAATGCTTTGATTTATCTAAT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=437707.000000
s hg38.chr6_KI270758v1_alt     44323 111 +     76752 CGTTTT-AAAAGGTTTTTACT----------------------TAAAGATGGCAATTTAAGTCT------------------------------AGTTATCTATTTTC---------AAAAAATGTGCCAAAGCTTTT-CAGCA-----TCCTGACAGCAAACCCTGTGGCAGGGCATT
s panTro5.chr6             142747635 111 - 175400573 CATTTT-AAAAGGTTTTTACT----------------------TAAAGATGGCAATTTAAGTCT------------------------------AGTTATCTATTTTC---------AAAAAATGTGCCAAAGCTTTT-CAGCA-----TCCTGACAGCAAACCCTGTGGCAGGGCATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895864 111 - 173848474 CATTTT-AAAAGGTTTTTACT----------------------AAAAGATGGCAATTTAAGTCT------------------------------AGTTATCTATTTTC---------AAAAAATGTGCCAAAGCTTTT-CAGCA-----TCCTGACAGCAAACCCTGTGGCAGGGCATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2413410 111 +   2807050 CATTTT-TAAAGGTTTTTACT----------------------TAAAGATGGCAATTTAAGTCT------------------------------AGTTATCTATTTTC---------AAAAAATGTGCCAAAGCTTTT-CAGCA-----TCCTGACAGCAAACCCTGTGGCAGGGCATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45706419 111 - 122973662 CATTTT-AAAAGGTTTTTACT----------------------TAAAGATTGCAATTTAAGTCT------------------------------AGTTATCTATTTTC---------AAAAAATGTGCCAAAGCTTTT-CAGCA-----TCCTGACTGCAAACCTTGTCGCAGGGCATT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      706402 107 -   1936607 CATTTT-AAAAGGTTTTTACT----------------------TAAAGATTGCGATTCAAGTCT------------------------------AGTTATCTATTTTC---------AAAAAATGTGCCAAAGCTTGT-CCGCA-----CCCTGACAGCAAGCCT----GCGCAGCTTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667106  95 - 171630274 CATTTT----------------------------------------AGATTGCAATTTAAGTCT------------------------------AGTTATCTATTTTC--------AAAAAAATATGCCACAGCTTTT-CAGCA-----TCCTGACAGCAAACCCTGTGGCAGGCCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            220963  95 +   1154217 CATTTT----------------------------------------TGATTGCAATTTACGTCT------------------------------AGTTATCTAATTTC--------AAAAAAATGTGCCAAAGCTTTT-CGGCA-----TCCTGACAGCAAACCCTGTAGcagggcttc
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14040670  96 +  15232693 CATTTT----------------------------------------AGACTGCAATTTAAGTCT------------------------------AGTTATCTATTTTC-------AAAAAAAAAGTGCCAAAGCTTTT-CAGCA-----TCCTGACAGCAAACCCTGTGGcagggcttt
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290087  95 +    446445 CATTTT----------------------------------------AGATTGCAATATAAGTCT------------------------------AGTTATCTATTTTC--------AAAAAAATGTGCCAAAGCTTTT-CAGCA-----TCCTGACAGCAAACCCTGTGGcagggcttt
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      153138 108 +   1371726 --AATT-AAAATGTTTTGATT----------------------TA-AATTTGCAATTTAAGTCC------------------------------AGATATCTATTTCC---------AAAAATTGTGCCAAAGATTTT-CAACA-----TGCTGACAGCAAACTCCATGGcagggtttt
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15344045 107 -  18854210 --AATT-AAAATGTTTTTATT----------------------TA-AATTTGCAATTTAGGTCC------------------------------AGTTACCTATTTAC---------AAAAGAAATGCCAAATATTTT-GAACA-----CACCGACAGC-AACCCTATGGCAGGTTTCT
i otoGar3.GL873550         C 0 I 121
s canFam3.chr12             70392555 108 -  72498081 -GTAATGAAAATGTTTTAATT----------------------TAAAGTTTGCAGTGTAAGTCC------------------------------AGTTGTTTATTTAC---------AAAAAATCTGCCAAAAGTTTT-CATCATAGATTTATGA--------TCTATGGCAGTGTTAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            499023 166 +    935526 -TTTTT-TAAAATTTCTTAGTGATATGTAAGAAATATTTCCACTAGAACTAACAGTTTTAGCTTCCGTTTTTAAAAAATGTAAGGTTCAGTATAGGTTACCtatttataaaaaaaaaaaaaaaaGTTCCAAAGATTTTCCAGCA-----TGCCAACAGC------TGTGGAagagttct
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4483354 746 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1132091.000000
s hg38.chr6_KI270758v1_alt     44434 220 +     76752 ---Tcctcggcaccaccggccttctgggctggatgactctttgttgtggggg-----------ctgccacgtgcctcatagaatgttta-gcaacacccctggtttctactcaatatatgtcccctcc-cccagtcgtgacaactgaaaatgttcccagacattgccaaatgtcctctaagggc-aaaacagcctctttccccattaagaaccCTGGTCCAAGGTGGT-TATCCTCCC
s panTro5.chr6             142747746 220 - 175400573 ---Tcctcggcaccaccggccttctgggctggatgattctttgttgtggggg-----------ctgccacgtgcctcatagaatgttta-gcagcatccctggtttctactcaatatatgtcccctcc-cccagttgtgacaactgaaaatgttcccagacattgccaaatgtcctctaagggc-aaaacagcctctttccccattaagaaccCTGGTCCAAGGTGGT-TATCCTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140895975 220 - 173848474 ---Tccttggcaccaccggccttctgggctggatgattctttgttgtggggg-----------ctgccacgtgcctcatagaatgttta-gcagcatccctggtttctactcaatatatgtcccctcc-cccagttgtgacaactgaaaatgttcccagacattgccaaatgtcctccaagggc-aaaacagcctcttttcccattaagaaccCTGGTCCAAGGTGGT-TATCCTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2413521 220 +   2807050 ---Tcctcggcaccaccggccttctgggctggatgattctttgttgtggggg-----------ctgccacgggcctcatagaatgttta-gcagcatccctggtttctactcaatatatgtcccctcc-cccagttgtgacaactgaaaatgttcccagacattgccaaatgtcctctaagggc-aaaacagcctctttccccattaagaaccCGGGTCCAAGGTGGT-TATCCTCCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45706530 221 - 122973662 ---Tccttggcaccaccggccttctgggctggatgattctttgttgtggggg-----------ctgccacgtgcctcatagaatgttta-gcagcatccctggtttctaccctatatatgtcccctctgcctagttgtgacaactgaaaatgtccccagacattgccaaatatcttctaagggc-aaaaccgcctctttccccattaagaaccCTGGTCCAAGGTGGT-TATTTTCCC
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      706509 219 -   1936607 ---Tcctcggcaccagcggccttctgggctggaggattctttattgtggggg-----------ctgccacatgcctcacagaatgttca-gcagcatccctggtttccacccaatatatgtcccctccccctagttgtgacaactgaaaatgtccccagac--ttccaaatgtcctccaagggcaaaaaccgcctctttccccattgagaaccCTAGTCCAA-GTGGT-TATTCTCGC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667201 219 - 171630274 ---Tcctctgcaccaccgatgttctgggct-gaggattgtctgctgt-gggg-----------ctgccatgcgcatcatagaatgttca-gaagcatccctggtttctacccaatatatgtcccctccccc-agttgtaaccactgaaaatgaccccagacattgccaaatgtcctctaagggcaaaaaccacgtgtttccccattaagaaccCTGGTCCAAGGTGGT-TATTCTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221058 217 +   1154217 ---tcctcagcaccatcgatgttctgggctagaggatcgtttgttgtggggg-----------ctgccacgtgcatcatagaatgttca-gcagcatctctggttgctacccaatatatgtcccctccccctagttgtaaccactgaaaacgtccccagacattgccaaatgtcctctaaggg-----gccacctgtttccccattaagaaccCTGGTCCAAGGTGGT-TATTCTCCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14040766 222 +  15232693 ---tcctcagcaccaccaatgttctgggctggatgattgtttgttgtggggg-----------ctgccatgtgcatcgcagaatgttca-gcagcatctctggtttctacccaatatatgtcccctccccctagttgtaacaactgaaaatgtccccagacattgccaaatgtcctctaagggcaaaaaccacctgtttccccattaagaaccCTGGTCCAAGGTGGT-TATTCTCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290182 222 +    446445 ---tcctcagcaccaccaatgttctaggctggatggttgtttgttgtggggg-----------ctgccatgtgcatcatagaatgttca-ggagcatccctggtttctacccaatatatgtccccttcccctagttgtaaccactgaaaatgtccccagacattgccaaatgtcctctaagggcaaaaaccacctgtttacccattaaggaccCTGATCCCAGGTGGT-TATTCTCCC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      153246 219 +   1371726 ---tccttggcattattgacattcggggctggatgggtctttgtt-t-gggg-----------ctgtcctgtgcattgcaggatgttta-gcagcatccttgacttctgcccattataggtcccctccccccagtcgtgacaaccaacaatgtctccagatgttgccaaatgtcccctaggggc-aaaaccatcttcttccccattgagaaccCTGGCCCAAGGCAGT-TATTCTCCC
i proCoq1.NW_012150019v1   C 0 I 178
s otoGar3.GL873550          15344273 218 -  18854210 ---Tccttggcattattgacctttggggctggatgattctttgtt-tggggg-----------gtgtcctgtgtattataggatgttta-gcagggtccctgacttccacccattatacttacc--tcccccagatgtgac-actgaaaatgtctccagaggtggccaaatgtcctgtaatggc-aaaaccatcaccttccccactgagaaccCTGGTCCACAGCAGTGTATTCTTCC
i otoGar3.GL873550         I 121 C 0
s canFam3.chr12             70392663 206 -  72498081 ---Tccttggcattattgacactttgggctggataattctttgatctaaggg-----------cttttctgtgaattgtaggatattta-gcagca---------------cactgaatgccctcttaccccagttatgaccaccaaaaacttctgcagaaattgctaaagatcctccaagggC-AAGACTATCAATTTTCCCATTCAGAACCCTAGTCGAAGGCAGT-TATTCCCCC
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            499189 201 +    935526 gaaaccttgacactatggacactttgagcagaatcattctttgctgagggggtggaggtgggactctcccatgcactgtaggatgtttgtttagcaacactagctgtca--------atagcaactcc----aaatgtaacaaccagaaatatctgcagacattgccaaacgttccccaggagC-------------------ACTGAGAACCAGAGTCCCCTGCAGT-CACA-----
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4483354 746 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=792176.000000
s hg38.chr6_KI270758v1_alt     44654 166 +     76752 TGATATATTCTCTCA-CAATCTAT--CTGAGCACTGGA---------GATGGATTCTCCCAACATTCTTCGAAAGCTTCATTGATTTGAGCAATTTTTTTG--AGAGTTCACTTGTAGA----TTTTCCCTCCCACCGCTTTGACATGAAAGACCTACAGGAACACA--AGCCTCTGAAGTGGTCT
s panTro5.chr6             142747966 166 - 175400573 TGATATATTCTCTCA-CAATCTAT--CTGAGCACTGGA---------GATGGATTCTCCCAACATTCTTCGAAAGCTTCATTGATTTGAGCAATTTTTTTG--AGAGTTCACTTGTAGA----TTTTCCCTCCCACCGCTTTGATATAAAAGACCTACAGGAACGCA--AGCCTCTGAAGTGGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896195 166 - 173848474 TGATATATTCTCTCA-CAATCTAT--CTGAGCACTGGA---------GATGGATTCTCCCAACATTCTTCGAAAGCTTCATTGATTTGAGCAATTTTTTTG--AGAGTTCACTTGTAGA----TTTTCCCTCCCACCGCTTTGACATAAAAGACCTACAGGAACGCA--AGCCTCTGAAGTGGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2413741 166 +   2807050 TGATATATTCTCTCA-CAATCTAT--CTGGGCACTGGA---------GATGGATTCTCCCAACATTCTTCGAAAGCTTCATTGATTTGAGCAATTTTTTTG--AGAGTTCACTTGTAGA----TTTTCCCTCCCACCGCTTTGATGTAAAAGACCTACAGGAACGCA--AGCCTCTGAAGTGGTCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45706751 176 - 122973662 TGATATATTCTCTCACCAGTCTAT--CTGAGCACTGGAGAAGGTTAGGATGGATTCTCCCAACATTCTTCAAAAGCTTCATTGATTTGAGCAATTTTTTTG--AGAGTTCACTTGTAGA----TTTCCCCTCCCACCGCTTTTATATAAAAGATCTACAGGAACACA--AGCCTCTAAAGTGGTCT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      706728 176 -   1936607 TGATATATTCTCTCACCAATCTAT--CTGAGCACTAGAGAAGGTTAGGATGGATTCTCCCAACATTCTTCAAAACCTTCATCGATTTGAGCAATTTTTTTG--AGAGTTCACTTGTAGA----TTTTCCCTCCCACCGCTTTGATATAAAAGATCTACAGGAACACA--AGCCTCTAAAGTGGTCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667420 174 - 171630274 TGATACA--GTCTCACCAATCTGT--CTGAGCGCTAAAGAAAGGGACGGTGTATTTCCCCAACATTCTTCAAAGGCTTCATTGATTTGAGCAATTTTTTTG--AGAGTTCATTTGTAAG----CTTTCCCTCCCACTGCTTTGATATAAAAGACCTGCAGGAATACA--AGCCTCTAAAGGGGACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221275 176 +   1154217 TGATACACTCTCTCACCAGTCTAT--CTGAGCACTAGAGAAAGTTAGGATGTATTTTCCCAACATTCTTCGAAGGCTTCATTGATTTGAGCAATTTTTTTG--AGAGTTCATTTGTAAG----TTTTCCCTCCCACTGCTTTGATATAAAAGACCTGCAGGAATACA--AGCCTCTAAAGGGGTCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14040988 176 +  15232693 TGATACAATCTCTCACCAATCTAT--CTGAACACTAGAGAAAGTTAGGATGTATTTTCCCAACATTCTTCGAAGGCTTCATTGATTTGAGCAATTTTTTTG--AGAGTTCATTTGTAAG----TTTTCCCTCCCACTGCTTTGATATAAAAGACCTGCAGGAATACA--AGCCTCTAAAGGCGTCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290404 176 +    446445 TGACACACTCTCTCACCAATCTAT--CTGAGCACTAGAGAAAGTTGGGATGTATTTTCCCAACATTCTTCAAAGGCTTCATTGATTTGAGCAATTTTTTTG--AGAGTTCATTTGTAAG----CTTTCCCTCCCACTGTTTTGATATAAAAGACCTGCAGGAATACA--AGCCTCTAAAGGGGTCT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15344491 173 -  18854210 CTTTTCTCTCTCTCACAAATGCATCCCTGAGCACCAGAGGAGGTTATGCTGCATTTCCCCAACATTGTTCAGAAGTTGCACTGATTAGGGCCATGTTTATT--AGAGTTCATTTGTAGG----CTCCCCCACCACTTGCTTTAATATAAAAGAC-----AGAACACA--AACCTATCAAGTGGTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70392871 177 -  72498081 GTTTACGCTTGCTCATGAATTTGTCTCTGAGCACCAATGAAGGTTAAGATGCATTTTCACAACTTTCTTCAAATGCTTTGCTAATTTGAGCAATTTTTTTTCCAAGTTACATTTGTAGG----TTTCCCC-----CTGTTTTAACTTGAAAGACCTAAAGGAACACATTTATCTATAAACCAGTTT
i canFam3.chr12            I 2 C 0
s dasNov3.JH569424            499390 170 +    935526 ---------CTCTCACAAATCT----CTGAGAACTAAAAAAGGTTAAGATGCATTTTAACAACATTCTTCAAAAGCTTCATTGATATGGGAAATTTTTTTTCTAGAGTGCAGTCATAGATTTTTTTTTCCCCTTCCCACTTTAGCATAAAAGTACCA-AGGAACACA--AACCCATAAGCTTGTTT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4483354 746 + 123392446 I
e proCoq1.NW_012150019v1      153465 178 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=230419.000000
s hg38.chr6_KI270758v1_alt     44820 31 +     76752 GTAGCAAGTGTGAGTTCATTTTAGTTCACAC
s panTro5.chr6             142748132 31 - 175400573 GTAGCAAGTGTGAGTTCATTTTAGTTCACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896361 31 - 173848474 GTAGCAAGTGTGAGTTCATTTTAGTTCACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2413907 31 +   2807050 GTAGCAAGTGTGAGTTCATTTTAGTTCACAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45706927 31 - 122973662 GTAGCAAGTGTGGGTTCGTTTTAGTTCACAC
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      706904 31 -   1936607 GCAGTAAGTGTGGGTTCGTTTTAGTTCACAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667594 31 - 171630274 GTAGCAAGTGTGGTTTCATTTTAGTTCACAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221451 31 +   1154217 GTAGCAAGTGTGGGTTCATTTTAGTTCACAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041164 31 +  15232693 GTAGCAAGTGTGGGTTCATTTTAGTTCACAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290580 31 +    446445 GTAGCAAGTGTGGGTTCATTTTAGTTCACAC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      153643 31 +   1371726 GTAGCAAGTGTGGGTTCTTTTTAGTTCACAC
i proCoq1.NW_012150019v1   I 178 I 29
s otoGar3.GL873550          15344664 31 -  18854210 GTAGCAAGTGTGGGCTCTTTTTAGTTCACAC
i otoGar3.GL873550         C 0 I 4
s canFam3.chr12             70393048 31 -  72498081 GTAGCAAATGTGCGTCCTTCTTAGTTCACAC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            499560 31 +    935526 GTAGCAAATGCGGGTTCTTTTTAGTTCATGC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4483354 746 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=116641.000000
s hg38.chr6_KI270758v1_alt     44851 29 +     76752 -GGCTGAGAAATCATGCT-TGGTATGGATGT
s panTro5.chr6             142748163 29 - 175400573 -GGCTGAGAAATCATGCT-TGGTATGGATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896392 29 - 173848474 -GGCTGAGAAATCATGCT-TGGTATGGATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2413938 29 +   2807050 -GGCTGAGAAATCATGCT-TGGTATGGATGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45706958 29 - 122973662 -GACTGAGAAATCATGCT-TGGTACGGATGT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      706935 29 -   1936607 -GGCTGAGAAATCATGTT-AGGCATGGATGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667625 29 - 171630274 -AGCTGAGAAATCACACT-TGGCATGGATGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221482 29 +   1154217 -AGCTGAGAAATCATGCT-TGGCATGGATGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041195 29 +  15232693 -ATCTGAGAAATCACGCT-TGGCATGGATGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290611 29 +    446445 -AGCTGAGAAATCACGCT-TGGCATGGATGT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15344699 25 -  18854210 -GACCAAGGGCTCATGGTGTGGTCTG-----
i otoGar3.GL873550         I 4 C 0
s canFam3.chr12             70393079 29 -  72498081 -GACTGAGTAGTGGTGCT-TGGGATGAAGTT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            499591 30 +    935526 AACCCCCAGAAGGGTGCT-TGGCATGGCCAC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4483354 746 + 123392446 I
e proCoq1.NW_012150019v1      153674 29 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=327793.000000
s hg38.chr6_KI270758v1_alt     44880 53 +     76752 TGTGGGGCTTTCTTTACTCTTACTTGGTGG--AAAAA-AAT-GTTCCTGCTTTTCAC
s panTro5.chr6             142748192 54 - 175400573 TGTGGGGCTTTCTTTACTCTTACTTGGTGG--AAAAA-AAAAGTTCCTGCTTTTCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896421 53 - 173848474 TGTGGGGCTTTCTTTACTCTTACTTGGTGG--AAAAA-AAA-GTTCCTGCTTTTCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2413967 53 +   2807050 TGTGGGGCTTTCTTTACTCTTACTTGGTGG--AAAAA-AAA-GTTCCTGCTTTTCAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45706987 53 - 122973662 TGTGGGGCTTTCTTTTCTCTTACTTGGTGG--AAAAA-AAA-GTTCCTGCTTTTCAC
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      706964 53 -   1936607 TGTGGGGCTTTCTTTGCTCTTACTTGCTGG--GAAAA-AAA-GTTTCTGCTTTTCAC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667654 54 - 171630274 TGTGGGGCTTTGTTTGCCCTTACTTGGTGGG-AAAAA-ATA-GTTCCTGCTTTTCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221511 55 +   1154217 TGTAGGGATGTCTTTGCCCTTACTTGGTGGGAAAAAA-AAA-GTTCCTGCTTTTCAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041224 54 +  15232693 TGTAGTGCTTTCTTTGCCCTTACTTGGTGGG-GGAAA-AAA-GTTCCTGCTTTTCAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290640 54 +    446445 TGTAGGGCTTTCTTTGCCCTTACTTGGTGGG-AAAAA-AAA-GTTCCTGCTTTTCAC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      153703 53 +   1371726 TGTGGGGCTTTCTTTGCTCTTACTTGGTGG--AAAGA-GAT-GTTTCTGCTTTTCAC
i proCoq1.NW_012150019v1   I 29 I 133
s otoGar3.GL873550          15344724 54 -  18854210 TGTGGGGCTTTCCTTGCTCTTACTCGGCAG--AAAAATAAT-GTTTCTGCTTCTCAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70393108 52 -  72498081 TGCAG-GCTTTATTTGCTCTTACCTGGTGG--AACGA-AAG-GTTTCTGCTTTTCAC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            499621 51 +    935526 TGCATGGCTTTCTTTGCTCTTACTTGGTGG--AACAG-A---GTTTCTGCCTTTCAC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4483354 746 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=573381.000000
s hg38.chr6_KI270758v1_alt     44933 133 +     76752 AAAAGGAGTCAAGGAGGCATCAGCAACACCCTTCAGTCTAAGGGGAGGTGACTGGTAAGTTTCAGGTGGCAAGGTGCTCATGGTCTGC----ACTGTCTTCTAA---CACCCAACCCCATTTTCACAT--------------------AAATATCATACT
s panTro5.chr6             142748246 133 - 175400573 AAAAGGAGTCAAGGAGGCATCAGCAACACCCTTCAGTCTAAGGGGAGGTGACTGGTAAGTTTCAGGTGGCAAGGTGCTCATGGTCTGC----ATTGTCTTCTAA---CACCCAACCCCATTTTCACAT--------------------AAATATCTTACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896474 133 - 173848474 AAAAGGAGTCAAGGAGGCATCAGCAACACCCTTCAGTCTAAGGGGAGGTGACTGGTAAGTTTCAGGTGGCAAGGTGCTCATGGTCTGC----ATTGTCTTCTAA---CACCCAACCCCATTTTCACAT--------------------AAATATCACACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414020 132 +   2807050 AAAAGGAGTCAAGGAGGCATCAGCAACACCCTTCAGCCTAAGGGGAGGTGACTGGTAAGTTTCAGGTGGCGAGGTGCTCATGGTCTGC----ACTGTCTTCTAA---CACCCAA-CGCATTTTCACAT--------------------AAATATCATACT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707040 133 - 122973662 AAGAGGAGTCAAGGAGGCATCAGCAACACCCTTCAGTCTAAGGGGAGGGAACTGATAAGTTTCAGGAGGCAAGGTGCTCATGGTCTGC----ACTGTCTGCTAA---CACCCAACCCCATTTTCACAT--------------------AAATATCATACT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707017 133 -   1936607 AAGAGGAGTCAAGGAGGCATCAGCAGCACCCTTCAGTCTAAGGGGAGGGGACTGATAAGTTTCAGGTGGCAAGGTGCTCATGGTCTGC----ACTGTCCTGTAA---CACCCAACCCCGTTTTCACAT--------------------AAATATCATACT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667708 126 - 171630274 AGGAGGAGGCAAGGAGGCATCAGCAACACCCT-------AAGGGGTAGTGACTGGTAAGTTTCAGGTGGTAAGAGGCTCATGATCTGC----ACTCTCTTATAG---CACCCAGCCCCATTTTCACAT--------------------AAACATCATACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221566 135 +   1154217 AAGAGGAGGCAAGGAGGCATCAGC-ACACCCTTCGGTC-TAAGGGAAGTGACTGGTAAGTTTCAGGTGGCAAGAGGCTCATGATCTGCACTGACTGTCTTGTAA---CAGCCAGCCCCATTTTCACAT--------------------AAATACCACACT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041278 133 +  15232693 AAGAGGAGGCAAGGAAGCATCAACAACACCCTTCAGTCTAAGGGGAAGTGACTGGTAAGTTTCAGGTGGCAAGAGGCTGATGATCTGC----ACTGTCTTGTAA---CCGGCAGCTGCATTTTCACAT--------------------AAATATCATACT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290694 130 +    446445 AAGAGGAGGCAAGGAGGCATCAGCAACACCCTTCGGTCTAAGGGGAAGTGACTGGTAAGTTTCAGGTGGCAAGAGGCTCATGATCTGC----ACTGTCTTGTAA---CACCCAGCCCCA---TCACAT--------------------AAATACCATACT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15344778 132 -  18854210 AAGAGGGACTGAGCAAACATCTGCAAGGACCTTCAGTAGAGGAGGAGCTGAATGGTACATCTCAGGTAGCAAGATGGTGATGG-CTGT----GCTATCTTGTTA---GGCTCAGTCCCATTTTAATAC--------------------AAATATTTCAGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70393160 145 -  72498081 AAGAGGAG--------GCATTGGCAATCCCCTTCATTCGGAGGGGAAGTGACTGATATGTATCCAGTGGTGAGCTACAGGCTGTCTAT----GCTGTCTCCTAA---CGCTCAGTCCTATTTTCATATTGATATTTGTGGGtttttaaaaatattttatt
i canFam3.chr12            C 0 I 197
s dasNov3.JH569424            499672 135 +    935526 AGCAGGAGTCAAGGAGCCAGTGGCATTG-CCTTCAGCCTAAGGGGAAGTGATCCAGACCTTACAAATGGCAAACTGCTAAGGGTCTGC----ATTGTCTTACAAACTCTCAGAGTCATGTTTTCATAC--------------------ATGTGTTTTATT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4483354 746 + 123392446 I
e proCoq1.NW_012150019v1      153756 133 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=17376.000000
s hg38.chr6_KI270758v1_alt     45066 4 +     76752 GCCC
s panTro5.chr6             142748379 4 - 175400573 GCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896607 4 - 173848474 GCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414152 4 +   2807050 GCCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707173 4 - 122973662 GCCC
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707150 4 -   1936607 GCCC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667834 4 - 171630274 GCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221701 4 +   1154217 GCCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041411 4 +  15232693 GCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290824 4 +    446445 GCCC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15344910 4 -  18854210 GCTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70393502 3 -  72498081 GCC-
i canFam3.chr12            I 197 C 0
s dasNov3.JH569424            499807 3 +    935526 -TTC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4483354 746 + 123392446 I
e proCoq1.NW_012150019v1      153756 133 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=255121.000000
s hg38.chr6_KI270758v1_alt     45070 33 +     76752 TTTTCGATCTAGGTATTGTGAATGGGCTCATAT
s panTro5.chr6             142748383 33 - 175400573 TTTTCGATCTAGGTATTGTGAATGGGCTCATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896611 33 - 173848474 TTTTCGATCTAGGTATTGTGAATGGGCTCGTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414156 33 +   2807050 TTTTCGATCTAGGTATTGTGAGTGGGCTCATAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707177 33 - 122973662 TTTTAGATCTAGGTATTGTGAATGGGCTCATAT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707154 33 -   1936607 TTGTAGATCTAGGTATTGTGAATGGGCTCATAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667838 33 - 171630274 TTTCAGATCTGGGTGTTGTGAATGGGCTCATGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221705 33 +   1154217 TTTTAGATCTGGGCACTGTAATTGGGCTCATGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041415 33 +  15232693 TTTTAGATCTGGGTATTGTGATTGGGCTCATGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290828 33 +    446445 TTTTAGATCTGGGTATTGTGAATGGGCTCATGA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4484100 33 + 123392446 TTTTAGATCTAGGTATTGTGACTGGGCTCATAT
i micMur3.chr6             I 746 I 189
s proCoq1.NW_012150019v1      153889 33 +   1371726 TTTTAGATCTAGGTATTGTGACTGGGCTCATGT
i proCoq1.NW_012150019v1   I 133 C 0
s otoGar3.GL873550          15344914 33 -  18854210 TTTTAGTTCTAGGTATTGTGACTGGGCTCATAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70393505 33 -  72498081 TTTGAGATCTAGGTGTTGTGACTGGGCTTGTAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            499810 33 +    935526 TTTTAGATCTAGGCATTGCGATTGGGCTCATAT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=227298.000000
s hg38.chr6_KI270758v1_alt     45103 42 +     76752 AAGTTTCCTTAAAGAT-ATCTTA-TATGAAAGTACATATTTTTT
s panTro5.chr6             142748416 42 - 175400573 AAGTTTCCTTAGTGAT-ATCTTA-TATGAAAGTACATATTTTTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896644 42 - 173848474 AAGTTTCCTTAGAGAT-ATCTTA-TATGAAAGTATATATTTTTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414189 42 +   2807050 AAGTTTCCTTAGAGAT-ATCTTA-TATGAAAGTACATATTTTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707210 42 - 122973662 ACGTTTCCTTAGAGAT-ATCTTA-TATGAAAGTACATATTTTTT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707187 42 -   1936607 AAGTTTCCTTAGAGAT-ATCTTA-TATGAAAGTACATATTTTTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667871 42 - 171630274 AAGTTTCCTTAGAGATAATCTTA-TATGAAAGTACATA-TTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221738 43 +   1154217 AAGTTTCCTTAGAAATAATCTTA-TATGAAAGTACATATTTTTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041448 43 +  15232693 AAGTTTCCTTAGAGATAATCTTA-TATGAAAGTACATATTTTTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290861 43 +    446445 AAGTTTCCTTAGAGATGATCTTA-TATGAAAGTACATACTTTTT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      153922 42 +   1371726 CCATTTCCTTAGATAC-GCCTTA-AATGAAAGCACATATTTTTT
i proCoq1.NW_012150019v1   C 0 I 147
s otoGar3.GL873550          15344947 38 -  18854210 -----CAGTTATATCT-ATGTTATAATGAAAGTACTTATTTTTT
i otoGar3.GL873550         C 0 I 2
s canFam3.chr12             70393538 40 -  72498081 CAGTTTCCCTAGAGCT-ATTTTA-GATGAAAACATGCATTTT--
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            499843 42 +    935526 CAGTTTCCCTAGAGAT-ACTTTA-AATGAAAACATATATCTTTT
i dasNov3.JH569424         C 0 I 1
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484133 189 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=622391.000000
s hg38.chr6_KI270758v1_alt     45145 149 +     76752 ATAAAGCAA---AT-GGGCAATATTTGTGTAACAACAATCTCCTGACTCATTTGATTGTTAAATCTCCATTTCA----GAATGTTGA--TTTTTACCCCTGTCCCATAAAATCTTACTAGCAG--------TAGGTTCTTGGAAAGGGGGAAACTGTAATTGACTTG
s panTro5.chr6             142748458 149 - 175400573 ATAAAGCAA---AT-GGGCAATATTTGTGTAACAACAATCTCCTGACTCATTTGATTGTTAAATCTCCATTTCA----GAATGTTGA--TTTTTACCCCTGTCCCATAAAATCTTACTAGCAG--------TAGTTTCTTGGAAAGGGGGAAACTGTAATTGACTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896686 149 - 173848474 ATAAAGCAA---AT-GGGCAATATTTGTGTAACAACAATCTCCTGACTCATTTCATTGTTAAATCTCCATTTCA----GAATGTTGA--ATTTTACCCCTGTCCCATAAAATCTTACTAGCAG--------TAGTTTCTTGGAAAGGGGGAAACTGTAATTGACTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414231 149 +   2807050 ATAAAGCAA---AT-GGGCAATATTTGTGTAACAACAATCTCCTGACTCATTTGATTATTAAATCTCCATTTCA----GAATGTTGA--TTTTTACCCCTGTCCCATAAAATCTTACTAGCAG--------TAGTTTCTTGGAAAGGGGGAAACTGTAATTGACTTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707252 148 - 122973662 ATAAAGCAA---AT-GGGCAATATTTGTGTAACAACAATCTCCTGACTCATTTGATTGTTAAATCTCCATTTCA----GAATGTTGA--TTTTT-CCCCCGTCCCATAAAATCTTACTAGCAT--------TAGTTTCTGGGAAAGGGGGAAGCTGTAATTGACTTG
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707229 154 -   1936607 ATAAAGCAA---GT-GGGCAATATTTGAGTAACAACAATCTCCTGACTCATTTGATTGTT-AATCTCCATTTCA----GAATGTTGA--TTTTT--CCCCATCCCATAAAATGTTTCTGGGAAACATTTCCTAGTTTCTCGGAAAGGGGGAAGCTGTAATTGACTCG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138667913 150 - 171630274 ATAAAGCAA---AT-GGGCAATATTTGAGTAACAATAATCTCCTGACTCATTTGCTTGTC-AACCTCCATTTCA----GAATGTTGATTTTTTTTCCCCTGTCCCATAAAATCGTACTAACAT--------TCATTTCTGGGAAAAAAGGAAGCAGTAATTGATTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221781 150 +   1154217 ATAAAGCAA---AT-GGGCAATATTTGAGTAACAATAATCTCCTGACTCATTTGGTTGTT-AATCTCCATTTCA----GAATGTTGATTTTTTTTCCCTCGTCCCATAAAATCTTACTAATAT--------TAGTTTCTGGGAAAGGAGGAAGCAGTAATTGACTCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041491 149 +  15232693 ATCAAGCAA---AC-GGGCAATATATGAGTAACAATAATCTCCTGACTCATTTGGTTGTT-AATCTCCATTTCA----GAATGTTGA-TTTTTTTCCCTCGTCCCATAAAATCTTACTAACAT--------TAGTTTCTGGGAAAGGAGGAAGCAGTAATTGACTCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      290904 149 +    446445 ATAAAGCAA---AT-GGGCAATATTTGAGTAACAATAATCTCCTGACTCATTTGGTGGTT-AATCTCCATTTCA----GAATGTTGA-TTTTTTTCCCTCGTCCCATAAAATCTTACTAACAT--------TAGTTTCTGGGAAAGGAGGAAGCAGTAATTGACTCA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15344987 150 -  18854210 AGAAAACAAAATAA-AAGTAATATTTCAGTAATAATAATCTCCTTGATTATTTGATTATT-AATTTCTATTTCA----GACTGCTGA--TTTTTTCTCCCGTCCCATAAAATCTTACTAGAAT--------TAGTTTCTGGGGAA-AAGGAAGCGGTAATTAATTCA
i otoGar3.GL873550         I 2 C 0
s canFam3.chr12             70393578 124 -  72498081 -AAAAACAG-------------------TTATAAATAATCTCCTGAATCACTTGGT--TT-ATACTCTATTTCAG--TGACTGTTGC----TTTTCCCCTGCCCTCTGGAATCTTACTGGCAT--------TAGCTTCTGGGAAAAGA-GAAGCAATCATCA-----
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            499886 136 +    935526 AGAAAGCAG---ATAAAAAAATAATAGAATAATAATAATCTTCAGAACCACTCGATTCAC-TATCTCCATTTCGGATGGACTGTTGA--TTTTTTTCCCTGCCCCGT------------------------TGGCCTCTGTGCAAAGGGG-AGCAGAACTAGAGCAG
i dasNov3.JH569424         I 1 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484133 189 + 123392446 I
e proCoq1.NW_012150019v1      153964 147 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=665945.000000
s hg38.chr6_KI270758v1_alt     45294 103 +     76752 ACA-TTGCTCCTGAGCTGGTTTCTCTACTTTGTGTGAAGCAAGTTTT-CTTTCAATAAAATACTTGACACATCACATATAGTAAGTCTTAGACTTCTTTCACTCT
s panTro5.chr6             142748607 103 - 175400573 ACA-TTGCTCCTGAGCTGGTTTCTCTACTTTGTGTGAAGCAAGTTTT-CTTTCAATAAAATACTTGACACATCACATATAATAAGTCTTAGACTTCTTTCACTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896835 103 - 173848474 ACA-TTGCTCCTGAGCTGGTTTCTCTACTTTGTGTGAAGCAAGTTTT-CTTTCAATAAAATACTTGACACATCACATATAATAAGTCTTAGACTTCTTTCACTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414380 103 +   2807050 ACA-TTGCTCCTGAGCTGGTTTCTCTACTTTGTGTGAAGCAAGTTTT-CTTTCAATAAAATACTTGACACATCACATATAATAAGTCTTAGACTTCTTTCACTCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707400 102 - 122973662 ACA-CTGCTCCTGAGCTGGTTTCTCTACTTTGTGTGAAGCAAGTTTT-CTCTCAATAAAATACTTGACACCTCACATATAATAAGTCTTAGACTTCTTTCACTC-
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707383 103 -   1936607 ACA-CTGCCTCTGAGGTACTTTCTCTACTTTTTGTGGAGCAAGTTTT-CTTTCAAAGAAATACTTGACACATCACACATAATAAGTCTTAGACTTCTTTCACTCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668063 103 - 171630274 ACA-TTGCTCCTGAGCTGGTTTCTCCACTTGATGTGAAGCAAGTTTT-CTTTGAATAAAACACTCGACACATGACATGTAAGAAGTCCTAGACTTCTTTCACTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            221931 102 +   1154217 ACA-TTGCTCCTGAGCTGGCTTTTCTACTTGGTGTGAAGCATGTTTT-CTTTTAATAAGATACTTGAC-TATCACATGTAATAAATCCTAGAATTCTTTGACTCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041640 102 +  15232693 ACA-TTGCTCCTGAGCTGGCTTTTCTACTTGGTGTGAAGCAAGTTTT-CTTTTAATAAAATACTGGAC-TATCACATGTAATAAATCCTAGAATTCTTTCACTCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291053 102 +    446445 ACA-TTATTCCTGAGCTGGCTTTTCTACTTGGTGTGAAGCAAGTTTT-CTTTTAATAAAATACTTGAC-TATCACATGTAATAAATCCTAGAATTCTTTCACTCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4484322 102 + 123392446 ACA-TTGTCCCTGAGCTGGTTCTTCTACTTGGTGTGAAGCTAA-TTT-ATTTCAATAAAATACTTGCCACATCAGATATAATTCGTCTTAGGCTTCTTCCACTCT
i micMur3.chr6             I 189 I 280
s proCoq1.NW_012150019v1      154111 102 +   1371726 ACA-TTGCCCCTAAGCTGGTTCTTCTACTTGGTGTGAAGCAAA-TTT-CTTTCAATAAAATACTTGCCACATAACATATAATATGTCTTAGGCTTCTTTCACTCT
i proCoq1.NW_012150019v1   I 147 C 0
s otoGar3.GL873550          15345137 102 -  18854210 ACA-TTGCCCCTGAGTTGGTTCTTCTACTTGGTATGAAGCAAA-TTT-CCATCAGTAAAATACTTGCCACGTCAGCTATAATAAGGCTTAGACTTCTTTCACTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70393702  85 -  72498081 ------GCTCCTGAACAAGTCCTTCTAGTTGGTGAGAGAC-------------AGTAAGATACTCGACAC-TCAGATGGATTGAGTCTTAGGCTTCTTTCACTCT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            500022 104 +    935526 -CATTTGCCCCTGAGCAGGTTCTTCTACTTGACATGAAGCAAGTTTTCCTTTCAATAAAATACTTGACACATCAGAGAAAATAAATCTTGGGCTTCTTTCACTCT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=83625.000000
s hg38.chr6_KI270758v1_alt     45397 17 +     76752 GAAGTTTGTATTTTTCA--
s panTro5.chr6             142748710 17 - 175400573 GAAGTTTGTATTTTTCA--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896938 17 - 173848474 GAAGTTTGTATTTTTCA--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414483 17 +   2807050 GAAGTTTGTATTTTTCA--
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707502 16 - 122973662 -AAGTTTGTATTTTTCA--
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707486 17 -   1936607 GAAGTTTGTATTTTTCA--
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668166 17 - 171630274 GAATTTTGTGTTTTTCA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222033 17 +   1154217 GAATTGTGTGTTTTTCA--
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041742 17 +  15232693 GAATTTTGTGTTTTACA--
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291155 17 +    446445 GAATTTTGTGTTTTTCA--
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      154213 17 +   1371726 GAATTTTTCATTTTTCA--
i proCoq1.NW_012150019v1   C 0 I 97
s otoGar3.GL873550          15345239 17 -  18854210 GATTTTTTTCTCTTTCA--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70393787 17 -  72498081 GCATTTCTCAGTTTTCG--
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            500126 19 +    935526 GAATTTTTCATTTTTTCCA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484424 280 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=386317.000000
s hg38.chr6_KI270758v1_alt     45414 92 +     76752 ATGGTAAAACTAGC-CTTCTATCCTTG----TCCTGGTAAGTTTTAAAGTTTTTAGCTGTGT-GAAGTATTTTTGTTCAGCTGGGACAGTGGGGTTGC
s panTro5.chr6             142748727 92 - 175400573 ATGGTAAAACTAGC-CTTCTATCCTTG----TCCTGGTAAGTTTTAAACTTTTTAGCTGTGT-GAAGTATTTTTGTTAAGCTGGTACAGTGGCGTTGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140896955 92 - 173848474 ATGGTAAAACTAGC-CTTCTATCCTTG----TCCTGGTAAGTTTTAAACTTTTTAGCTGTGT-GAAGTATTTTTGTTAAGCTGGTACAGTGGCGTTGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414500 92 +   2807050 ATGGTAAAACTAGC-CTTCTATCCTTG----TCCTGGTAAGTTTTAAACTTTTTAGCTGTGT-GAAGTATTTTTGTTAAGCTGGTACAATGGGGTTGC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707518 91 - 122973662 ATGGTAAAACTAGC-CTTCTATCCTTG----TCCTGGTAAGTTTTAAACTTTTTAG-TGTGT-GAAGTATTTTTGTTAAGCTGGTACATTGGGGTTGT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707503 93 -   1936607 ATGGTAAAACTAGC-CTTCTATCTTTG----TCCTGGTAAGTTTTAAACTTTTTAGCTGTGTAGAAGTATTTTTGTTATGCTGGTACAGTGGGGTTGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668183 89 - 171630274 GTAGTACAGCTAGC-CTTCCAGCCTTG----TCCTGGTCAGTTTTAGGCTTTTCAGCTGT---GAAGTGTTTTTGTTATGCTGGTGCAGT-GGGCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222050 90 +   1154217 ATAGCACAACTAGC-CTTCTAGCCTTG----TCCCGGTAAGTTTTAAACTTTTTAGCTGT---GAAGTGTTTTCGTTATGCAGGTACAGTGGGGTTTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041759 93 +  15232693 AGAGTACAATTAGC-CTTCTAGCCTTG----TCCTGTTAAGTTTTAAACTTTTTAGCTGTGTAGAAGTGTTTTTGTTATGCTGGTACAGTGGGGTTTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291172 93 +    446445 ATAGTACAACTAGC-CTTCTAGCCTTG----TCCTGGTAAGTTTTAAACTTTTTAGCTGTGTAGAAGTGTTTTTGTTATGCTGGTACAGTGGGGTTTT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15345256 96 -  18854210 GCACTAAACTGAGC-ATTCAGTGTTTGCCCTTCCTAATCAGTTTTAGACTTCTGAGCTGTGT-GGAATATTTTTATCATGCTAGGACAGTGGGCTTGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70393804 93 -  72498081 AAATTAAAGCTGGC-ATGTGATTTTTG----TCCTGGTAGTCTTAAAACTTTTTAGCTGTGTGGAAATATTTTTATAATGCTGATGTAATGAACATGT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            500145 83 +    935526 GAAGTATAGCTAGCACCTCTACTTTCA----TCCCAGTAATTTTGCAACTTTGCAGCTATA--AAACTCTTTTTACAGTGCTGATACAG---------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484424 280 + 123392446 I
e proCoq1.NW_012150019v1      154230 97 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=196300.000000
s hg38.chr6_KI270758v1_alt     45506 29 +     76752 TGGGTTTGCCAGTTTCTGCCAGTTGGGC--T
s panTro5.chr6             142748819 29 - 175400573 TGGGTTTGCCAGTTTCTGCCAGTTGGGC--T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897047 29 - 173848474 TGGGTTTGCCAGTTTCTGCCATTTGGGC--T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414592 29 +   2807050 TGGGTTTGCCAGTTTCTGCCAGTTGGGC--T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707609 29 - 122973662 TGGGTTTGCCAATTTCTGCCAGTTGGGC--T
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707596 29 -   1936607 TGGGTTTGCCAATTTCTGCCAGTTGGGC--T
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668272 29 - 171630274 GGGGTTTGCCAATTTCTGGCAGTTGGGC--T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222140 29 +   1154217 GGGGTTTGCCCATTTCTGGCAGTTGGGC--T
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041852 29 +  15232693 TGGGTTTGCCAATTTCTGGCAGTTGGGC--T
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291265 31 +    446445 TGGGTTTGCCAATTTCTGGCAGTTGGGCTTT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      154327 29 +   1371726 TGGGTTTGCCAATCTCTGCCAGTTGGGC--T
i proCoq1.NW_012150019v1   I 97 I 146
s otoGar3.GL873550          15345352 29 -  18854210 CGTGTTTGTCAGTCTCTGCCAGTTGGGC--T
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70393897 28 -  72498081 TGGGTTTGCCAATCTCTG-CAGTTGGGC--T
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            500228 29 +    935526 TGAGTTGGCCAAACTCTACCAGTTGGGC--T
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484424 280 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=459013.000000
s hg38.chr6_KI270758v1_alt     45535 135 +     76752 TTTTG---TTTTTTTAATTCATTC----GTGTTTTT-----AAGTC-------------TATTCTAAAAGGCCA--------------CTTACAGATATTTTCCCG-ACTATC----------------TTTCTACTACTCTTTCTTTCACTT-TCCACGGCATCTCTGTGTCCC-GGGTTCTCTGAGCGCTA
s panTro5.chr6             142748848 135 - 175400573 TTTTG---TTTTTTTAATTCATTC----GTGTTTTT-----AAGTC-------------TATTCTAAAAGGCCA--------------CTTACAGATATTTCCCTG-ACTATC----------------TTTCTACTACTCTTTCTTTCACTT-TCCATGGCATCTCTGTGTCCC-GGGTTCTCTGAGTGCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897076 135 - 173848474 TTTTT---TTTTTTTAATTCATTC----GTGTTTTT-----AAGTC-------------TATTCTAAAAGGCCA--------------CTTACAGATATTTTCCCG-ACTATC----------------TTTCTACTACTCTTTCTTTCACTT-TCCACGGCATCTCTGTGTCCC-GGGTTCTCTGAGTGCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414621 135 +   2807050 TTTTG---TTTTTTTAATTCATTC----ATGTTTTT-----AAGTC-------------TGTTCTAAAAGGCCA--------------CTTACAGATATTTTCCCG-ACTATC----------------TTTCTACTACTCTTTCTTTCACTT-TCCACGGCATCTCTGTGTCCT-GGGTTCTCTGAGTGCTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707638 134 - 122973662 TTTTG----TTTTTTAATTCATTC----GTGTTTTT-----AAGTC-------------TATTCTAAAAGGCCA--------------CTTACAGATATTTTCCCA-ACTATC----------------TTTCTACTACTCTTTCTTTCACTT-TCCACTGCATCTCTTTGTCCC-GGGTTCTCCGAGTGCTA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707625 141 -   1936607 TTTTTTTTTTTTTTTAATTCATTCC--TGTGTTTTT-----AGGTC-------------TATTCTAAAAGGCCA--------------CTTACAGATATTTTCCCG-ACTATC----------------TTTCTGCTACTCTTTCTTTCACTT-TCCACGGCGTCTCTGTGCCCCTGGGTTCTCTGAGTGCTA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668301 129 - 171630274 --------TCTTTTAAATTCATTCC--TGTGTTTTT-----AAGTC-------------TATTCTAAA-GGCCA--------------CTTACAGATATTTTCCCG-GCCATC----------------TTTCTACTACTCTTTCTTTCACTT-CCCATAGCATCCCTGTGCCCCCGG---TTCTGAGTGTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222169 133 +   1154217 --------TTTTTTTAATTCATTCC--TGTGTTTTT-----AAGTC-------------TATTCTAAAGGGCCA--------------CTTACAGATATTTTCCCG-ACCACC----------------TTTCTAATACTCTTTCTTTCACTA-TCCATAGCATCCCTGTGCCCCTGGGTTCTCTGAGTGTGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14041881 133 +  15232693 --------TTTTTTTAATTCACTCC--CGTGTTTTT-----AAATC-------------TATTCTACAGGGCGA--------------CTTACAGATATTTTCCAG-ACCACC----------------TTTCTACTACTCTTTCTTTCACTT-TCCGTAGCATCCCTGTGCCCCTGGGTTCTCTGCGTGTGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291296 133 +    446445 --------TTTTTTTTATTCATTCC--TGTGTTTTT-----AAGTC-------------TATTGTAAAGGGCCA--------------CTTACAGATATTTTCCCG-ACCACC----------------TTTCTACCACTCTTTCTTTCACTT-TCCATAGCATCCCTGTGCCCCTGGGTTCTCTGAGTGTGA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15345381 161 -  18854210 -------ATTTCTTTTATTCATTGCTATGTGTTTTC-----AAGATACTAAATTTAGGGTGTTTTAAAAGGGTG--------------TTT--AGGGGTTTCCTTG-TTTGTCTTCTGCTGCAGCCGGATTTCCACCACTC--TCCTTCATTT-TCCAAGACTTCCCTGTGGCCCTGGCTTCTCTGGATGTTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70393925 151 -  72498081 -------ATTTCTTTTACTCATTCCTATGTG-TTTC-----AAGAC-------------GACACTGAAAGGCCATTGAGGGTGGTCTCCTTGGAGGTATCTTACTGTAGTACC---------------ATTTCCATCACTCTTTCTTTCCCTT-TCCAAGGTGAACCCCAGACCTTGGCCTCTCCCAAGGCAC
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            500257 117 +    935526 -------ATTTCCTCCACT-ATTCTCATATGGCTTCATATAAAGTT-------------CCTTCTAA--GGTCG--------------------------TCCTCG-GCCATC----------------TT----CTGCTCGAGTCTCCACTTCTCCATCTTCTCTTCCTTTTCC-GGGTGAACTGAG-----
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484424 280 + 123392446 I
e proCoq1.NW_012150019v1      154356 146 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=7397.000000
s hg38.chr6_KI270758v1_alt     45670 1 +     76752 G
s panTro5.chr6             142748983 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897211 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414756 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707772 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707766 1 -   1936607 G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668430 1 - 171630274 G
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222302 1 +   1154217 G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042014 1 +  15232693 G
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291429 1 +    446445 G
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      154502 1 +   1371726 G
i proCoq1.NW_012150019v1   I 146 C 0
s otoGar3.GL873550          15345542 1 -  18854210 A
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70394078 1 -  72498081 G
i canFam3.chr12            I 2 C 0
s dasNov3.JH569424            500374 1 +    935526 G
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484424 280 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1108123.000000
s hg38.chr6_KI270758v1_alt     45671 181 +     76752 CACTGAATGTTGGCTTTCTGGCTGCAGTGTGGAGACGCAGAGCCTTCCTGCCCTTTCCTCCATGTGTAGAAAACAGTGGTAAAGAAAGGCTTTGCAGGAGGAGTTGGGAGGAGGACAGG---AAAAAATATTTGAATCTTGCTCTATAAGTTTTGCAAGCTCACAACAGATGAACCTAAGGAgt
s panTro5.chr6             142748984 181 - 175400573 CACTGAATGTTGGCTTTCTAGCTGCAGTGTGGAGATGCAGAGCCTTCCTGCCCTTTCCTCCATGTGTAGAAAACTGTGGTAAAGAAAGGCTTTGCAGGAGGAGTTGGGAGGAGGACAGG---AAAAAATATTTGAATCTTGCTCTATAAGTTTTGCAAGCTCACAACAGATGAACCTAAGGAgt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897212 182 - 173848474 CACTGAATGTTGGCTTTCTGGCTGCAGTGTGGAGATGCAGAGCCTTCCTGCCCTTTCCTCCATGTGTAGAAAACTGTGGTAAAGAAAGGCTTTGCAGGAGGAGTTGGAAGGAGGACAGG--AAAAAAATATTTGAATCTTGCTCTATAAGTTTTGCAAGCTCACAACAGATGAACCTAAGGAgt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414757 181 +   2807050 CACTGAATGTTGGCTTTCTGGCTGCAGTGTGGAGACGCAGAGCCTTCCTGCCCTTTCCTCCATGTGTAGAAAACTGTGTTAAAGAAAGGCTTTGCAGGAGGAGTTGGGAGGAGGACAGG---AAAAAATATTTGAATCTTGCTCTATAAGTTTTGCAAGCTCACAACAGATGAACCTAAGGAgt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707773 181 - 122973662 CACTGAATGTTGGCTTTCTGGCTGCAGTGTGGAGACGCAGAGCTGTCCTGCCCTTCCCTCCACGTGTAGAAAACTGTGGTAAAGAAAGGCTTTGCAGGAGGAGCTGGGAGGAGGACAGG---AAAAAATATTTGAATCTTGCTCTGTAAATTTTGCAAGCTCACAACAGATAAACCTAAGGAgt
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707767 180 -   1936607 CACTGAATGTTGGCTTTCTGGCTGCAGTGTGGAGACGCAGAGCCTTCCTGCTGTTCCCTCCAGTTGTAGAAAACTGTGGTAAAGAAAGCCTTTGAAGGAGGAGTTGGGAGGAGGACAGG----AAAAATTTTTGAATCTTGCTCTATACGTTTTGCAAGCTCACAACAGACGAACCTAAGGAgt
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668431 176 - 171630274 CACTGAATGTCGGCCTTCTGGGTGCAGTCTTGGGATGCAGGGTCTTCCTGCCCTTCCCTCCGCATGTTGAAAACTGTGGCAAAGAAAGGTTTTGAAGGCGGAATTGGGAGGAGGACAAG--AAAAAAACACTTGAA------TCTATAAGTTTTGCAAGCTCACAACCGATGAATCTAAGGAGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222303 178 +   1154217 CACTGAATGTTGGCTTTCTGGGTGCCGTGTGGGGATGCAGGGTCTTCCTGCCCTTCCCTCCACATGTAGAAAACTGTGGCAAAGAAAGGTTTTGCAGGAGGAATTGGGAGGAGGACAAGAAAAAAAAATACTGGAA------TCTATAAGTTTTGCAAGCTCAGAACAGATGAATCTAAGGAGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042015 178 +  15232693 CACTGAATGTTGGCCTTCTGCCTGCAGTCTTGGGATGCAGGGTCTTCCTGCCCTTCCCTCCACATGTAGAAAACTGTGGCAAAGAAAGGTTTTGCAGGAGGAATTGGGAGGAGGACAAGAAAAAAAAATACTTGAA------TCTATAAGTTTTGCAAGCTCACAACAGATGAATCGAAGGAGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291430 177 +    446445 CACTAAATTTTGGCTTTCTGGCTGCAGTCTTGGGATGCAGGGTCTTCCTGCCCTTCCCTCTACATGTAGAAAACTGCGGCAAAGAAAGGTTTTGCAGGAGGAATTGGGAGGAGAACAAG-AAGAAAAATACTTGAA------TCTATAAGTTTTGCAAGCTCACAACAGATGAATCTAAGGAGT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4484704 181 + 123392446 CACTGGATGTTGGCTTCCTGGCTGCAGCGTGGGGAGGCAGGGCCTGCCTGCTCCTTCCTCCACAGGTAGAAAACTGTGGTGAAGAAGGACTTTGCAAGAGAAGGTGGGAGGAGGATGAG--AAAAA-ATATTTAAATTCTCTTCTGTAATTTCTGCATGCTCACAACAGATGAACCTAAGGAGT
i micMur3.chr6             I 280 I 110
s proCoq1.NW_012150019v1      154503 181 +   1371726 CACTGGATGTTGGCTTCCTGGTGGCAGCGT-GGGAAGCAGAGCCTTCCTGCTCTTTCCTCCACATGTAGAAAACTGTAGTGAAGATGGACTTTGCAAGAGAAGGTGGGAGGAGGATGAG--AAAAAGATATTTAAATTCTTCTCTAAAATTTCTGCATGCTCACAACAAATGGACTTAAGGAGT
i proCoq1.NW_012150019v1   C 0 I 109
s otoGar3.GL873550          15345543 179 -  18854210 GACCCCATGTTGGCTTACTGGCTGCAGAGTGGGGAGGCTGAGCCTTCCTACTCTTTGCTGTTCTGTT---TCACTGTAGTGAGGAAGGACTTTGCAAGACAAGGTGGGAGGAGGATGAG--AAAAAAATACTTGAATTCTCCTCTATAATTTCTGGATGTTCACAACAGATGGGGCTAAGGAGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70394079 174 -  72498081 -------CGATGGCTTCCTGGCGGAAGAGTGAGGATGCAGAGCCTTCTTGCTCTTTCCTGTACATCTAGGAGAGGGTAGTGATGAAGAACTTTGCAGGAGGGGCTGGGAGGAGGGCAAG---AAAAAATATCTGAATCCTACCCTATAATTTCTGCCTGCTCAGAATAAATGGACCTTAGAAAG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            500375 155 +    935526 CACCCAGGGAAGGCTTCCTGGCTGCAGCTCTGGGACCCAGAGCGTTCCTACTCTGTA-GCTACATCTAGGAAAC--TAGCAATGAAGGACTTCGCGAGATGGGCTGGGAGAAGGAAGAG----AAAAATATTTGAT----------------------GCCCACAACAGATGGGCCTAAGGAAT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=65790.000000
s hg38.chr6_KI270758v1_alt     45852 26 +     76752 tttgtttgctttggtttggtttggG-G
s panTro5.chr6             142749165 26 - 175400573 tttgtttgcttcggtttggtttggG-G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897394 26 - 173848474 tttgtttgctttggtttggtttggG-G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414938 26 +   2807050 tttgtttgctttggtttggtttggg-t
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707954 27 - 122973662 tttgtttgctttggtttggtttgggtt
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707947 26 -   1936607 tttgtttgctttggtttggtttggG-G
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668607 26 - 171630274 TCTGTTTGGTTTGATTTGGTCTGGG-T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222481 26 +   1154217 TCTGTTTGGTTTGATTTGGTCTGGG-T
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042193 26 +  15232693 TCTGTTTGGTTTGATTTGGTCTGGG-T
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291607 26 +    446445 TCTGTTTGGTTTGATTTGGTCTGGG-T
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15345722  5 -  18854210 ---GTTT-------------------T
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70394253  9 -  72498081 --TTTTTAAAA----------------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            500530 24 +    935526 --ATTTTGTTTTCGTTAGGTTTTAA-A
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355223 126 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=316890.000000
s hg38.chr6_KI270758v1_alt     45878 63 +     76752 TTTT----TTTAATATTATTGTTCCTTTACCTCAAG--TGT-TTTTTCATTTCAGTCACAAGACTTCCTT-
s panTro5.chr6             142749191 63 - 175400573 TTTT----TTTAATATTATTGTTCCTTTACCTCAAG--TGT-TTTTTCATTTCAGTCACAAGACTTCCTT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897420 63 - 173848474 TTTT----TTTAATATTATTGTTCCTTTACCTCAAG--TGT-TTTTTCATTTCAGTCACAAGACTTCCTT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2414964 63 +   2807050 tTTT----TTTAATATTATTGTTCCTTTACCCCAAG--TGT-TTTTTCATTTCAGTCACAAGACTTCCTT-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45707981 63 - 122973662 TTTT----TTTAATATTATTGTTCCTTTACTTCAAG--TGT-TTTTTCATTTCAGTCACAAGACTTCCTT-
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      707973 63 -   1936607 TTTT----TTTAATATTATTGTTCCTTTACCTCAAG--TGT-TTTTTCATTTCAGTCACAAGACTTCCTC-
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668633 66 - 171630274 TTTTA-AAAAAAATATTATTGTCCCTTTACCTGAAG--TGT-CTTTTCATTTCAGTCACAAGACTTCCTC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222507 63 +   1154217 TTTT----TAAAATATTATTGTCCCTTTACCTGAAG--TGT-TTTTCCATTTCAGTCACAAGACTTCCTT-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042219 63 +  15232693 TTTT----AAAAATATTATTGTCCCTTTACCTGAAG--TGT-TTTTTCATTTCAGTCACAAGACTTCTTT-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291633 63 +    446445 TTTT----TAAAATATTATTGTCCCTTTACCTGAAG--TGG-TTTTTCATTTCAGACACAAGTCTTCTTT-
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15345727 64 -  18854210 TATT----TTTAATATTATTGTTCATTCAGCTAAAG--AGTGTTTTTCATTCCAACCAGAAAGGTTCCCT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34355349 65 +  94987271 TCTT----TTTAACATCATTGTCTCTTTAGCTCAGGACTGA-TTTTTCTTTCCAATCAAAAAACTTCCTT-
i mm10.chr17               I 126 I 735
s canFam3.chr12             70394262 64 -  72498081 ----ACAAATAAATATTGTTGTCACTTTAACTCAGG--AGGGCTTTTCATTTCAGTCAGAAATCTTCCCT-
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            500554 53 +    935526 ----------------TTTTGTCACTTTAGCTAAAG--AATGTTTTTCGTTTCAATCAAAAAGCTTCCTTT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=97614.000000
s hg38.chr6_KI270758v1_alt     45941 21 +     76752 A-CACCT--AAAAAATTGCTTAAA
s panTro5.chr6             142749254 21 - 175400573 A-TACCT--AAAAAATTGCTTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897483 21 - 173848474 A-TACCT--AAAAAATTGCTTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415027 21 +   2807050 A-CACCT--AAAAAATTGCTTAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708044 21 - 122973662 A-TGCCT--AAAAAATTGCTTAAA
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      708036 21 -   1936607 A-TGCCT--AAAAAATTGCTTAAA
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668699 21 - 171630274 A-TGCGT--AAAAACTTGCTTAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222570 21 +   1154217 A-TGCAT--AAAAACTTGCTTAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042282 21 +  15232693 A-TGCAT--AAAAACTTGCTTAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291696 21 +    446445 A-TGCAT--AAAAACTTGCTTAAA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15345791 22 -  18854210 AGGGCTT--AAAAAATAATTTAAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70394327 21 -  72498081 A-GGCCT--AAAAAATAGTTTAAA
i canFam3.chr12            I 1 I 67
s dasNov3.JH569424            500607 23 +    935526 A-GACCTAAAAAAAAATGCTTAAA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=18800.000000
s hg38.chr6_KI270758v1_alt     45962 4 +     76752 ATAT
s panTro5.chr6             142749275 4 - 175400573 ATAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897504 4 - 173848474 ATAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415048 4 +   2807050 ATAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708065 4 - 122973662 ATAT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      708057 4 -   1936607 ATAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138668720 4 - 171630274 ATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222591 4 +   1154217 ATAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042303 4 +  15232693 ATAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291717 4 +    446445 ATAT
i aotNan1.NW_018508875v1   C 0 C 0
s dasNov3.JH569424            500630 4 +    935526 GTAt
i dasNov3.JH569424         C 0 I 573
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e canFam3.chr12             70394348 67 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15345813 0 -  18854210 C

a score=101451.000000
s hg38.chr6_KI270758v1_alt     45966 26 +     76752 TGTCTCATgaaattagggttgttgag
s panTro5.chr6             142749279 26 - 175400573 TGTCTCATgaaattagggttgttgag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897508 26 - 173848474 TGTCTCATgaaattagggttgttgag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415052 26 +   2807050 TGTCTCATgaaattagggttgttgag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708069 26 - 122973662 TGTCTCATgaaattagggttgttgaa
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      708061 26 -   1936607 TGTCTCATGAAATTAGGGTTGTTGAG
i colAng1.NW_012115555v1   C 0 I 641
s calJac3.chr4             138668724 26 - 171630274 tgtcttctgaaattagggttgttgag
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222595 26 +   1154217 tgtctcctgcaattagggttgttgag
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042307 26 +  15232693 tgtctcctgaaattagggttgttgag
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291721 26 +    446445 tgtctcctgaaattagggttgttgag
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e canFam3.chr12             70394348 67 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15345813  0 -  18854210 C
e dasNov3.JH569424            500634 573 +    935526 I

a score=851011.000000
s hg38.chr6_KI270758v1_alt     45992 281 +     76752 gcaggaataatttcataaagttctattggaaggcaaatgtcaggactgatgtaggaagacacaccaacgaagttgagggtggtccaaagtctgttacaagttggaaggcttttgtaaggaagttcaggcagaaagaaaggggctcttcatattggagttgtc-ttttttcactggagggtacaatacagaggttacaatcattggacacagatgacaatatatagactaaaatatttcatgcacaaaacaatcagtaaaactttatgattcagaaacaaatc
s panTro5.chr6             142749305 281 - 175400573 gcaggaataatttcataaagttctattggaaggcaaatgtcaggactgatgtaggaagacacaccaacgaagttgagggtggtccaaagtctgttacaagttggaaggcttttgtaaggaagttcaggcagaaagaaaggggctcttcatattggagttgtc-ttttttcattggagggtacaatacagaggttacaaccattggacacagatgacaatatatagactaaagtatttcatgcacaaaacaatcagtaaaactttatgattcagaaacaaatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897534 281 - 173848474 gcaggaataatttcataaagttctattggtaggcaaatgtcaggattgatgtaggaagacacaccaacgaagttgagggtggtccaaagtctgttacaagttggaaggcttttgtaaggaagttcaggcagaaagaaaggggctcttcatattggagttgtc-ttttttcattggagggtacaatacagaggttacaatcattggacacagatgataatatatagactaaaatatttcatgcacaaaacaatcagtaaaactttatgattcagaaacaaatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415078 281 +   2807050 gcaggaataatttcataaagttctattggaaggcaaatgtcaggattgatgtaggaagacacaccaacgaagttgagggtggtccaaagtctgttacaagttggaaggcttttgtaaggaagttcaggcagaaagaaaggggctcttcatattggagttgtc-ttttttcattggagggtacaatacagaggttacaatcattggacacagatgacaatatatagactaaaatatttcatgcacaaaacaatcagtaaaacttcatgattcagaaacaaatc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708095 281 - 122973662 gcaggaataatttcataaagatctgttggaagccaaatgtcaggattgatgtaggaagacacaccgacgaagttgagggtggtccaaagtctgttacaagttggaaggcttttgtaaggaagctcaggcagaaagaaaggggctcttcatattggagttgtc-ttttttcattggagggtgcaatacaaaggttacaatcattggacacagatgacaatatatagaccaaaatatttcatgcacaaaacaatcagtaaaactttatgtttcagaaacaaatc
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138668750 281 - 171630274 gcaggaataatttgataaagatttattggaagccaaatgtcaggattgatgcaggaagacacaccaatgaagttgagggtgtcccaaagtctgttacaagttggaaggcttttgtaaggaagtttaggaggagggataggggctcttcacatcggagttgtc-ttttttcattggagggtgtaatacagagcttacaatcattggatacagatgacaatatataggctaaaatattttatgcacaaaataatcagtaaaacttcatgattcagaaacaaatc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222621 282 +   1154217 gcagtaataatttgataaagatttattggaagccaaatgtcaggattgatgcaggaagacacaccaatgaagttgagggtgttccaaagtctgtgacaagttggaaggcttttgtaaggaagtttaggaggagggataggggctcttcccatcggagttttctttttttcattggagggtacaatacagaggttacaatcactggatacagatgacaatatataggctaaaatatcttatgcacaaaataatcagtaaaacttcatgattcagaaacaaatc
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042333 281 +  15232693 gcaggaataatttgataaagatttattggaagccaaatgtcaggattgatgcaggaagacacaccaatgaagttgagggtgttccaaagtctgttacaagttggaaagcttttgtaacgaagtttaggaggagggataggggctcttcacatcggagttgtc-atttttcattggagggtacaatacagaggttacaatcattggatacagatgacaatatataggctaaaatattttatgcacaaaataatcagtaaaacttcatgattcagaaacaaatc
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      291747 281 +    446445 gcaggaatcatttgataaagatttattggaagccaaatgtcaggattgatgcaggaagacacaccaatgaagttgagggtgttccaaagtctgttacaagttggaaggcttttgtaaggaagtttaggaggaggaataggggctcttcacatcggagttgtc-ttttttcattggagggtacaatacagaggttacagtcactggatacagatgacaatatgtaggctaaaatattttatgcacaaaataatcagtaaaacttcatgattcagaaacaaatc
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e canFam3.chr12             70394348  67 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15345813   0 -  18854210 C
e dasNov3.JH569424            500634 573 +    935526 I
e colAng1.NW_012115555v1      708087 641 -   1936607 I

a score=1292064.000000
s hg38.chr6_KI270758v1_alt     46273 357 +     76752 catatccttttcgatgtcaggaggttacatattaaccactacatcaaattagctcagaagctacattgaagccgaactacatcaacgtttgggtgtatgagcagatctggttataggttacagaggtatccttcaatcagacgttatcttatgtgtagg-aaaaggcaaggactattattgcttatcttttaaggagtagagtgactcaggcaagagagatgggaggccgtgtgctcaatcttgttttgtctttgaagcatctttctggagaactgcaggtcatcacag---caggggctttgtgaaagtatgctagcaagccgaaatgagcaagcaaggcttcttacatttgctacattg
s panTro5.chr6             142749586 360 - 175400573 catatccttttcgatgtcaggaggttacatattaatcactacatcaaattagctcagaagctacattgaagccgaactacatcaacgtttgggtgtatgagcagatctggttataggttacagaggtatccttcaatcagacgttatcttatgtgtagg-aaaaggcaaggactattattgcttatcttttaaggagtagagtgactcaggcaagagagatgggaggccgtgtgttcaatcttgttttgtctttgaagcatctttctggagagctgcaggtcatcacagactcaggggctttgtgaaagtatgctagcaagccgaaatgagcaagcaaggcttcttacatttgctacattg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140897815 360 - 173848474 catatccttttcgatgtcaggaggttacatattaatcactacatcaaattagctcagaagctacattgaagctgaactacatcaacgtttgggtgtatgagcagatctggttataggttacagaggtatccttcaatcagatgttatcttatgtgtagg-aaaaggcaaggactattattgcttatcttttaaggagtagagtgactcaggcaagagagatgggaggccgtgtgctcaatcttgttttgtctttgaagcatctttctggagagctgcaggtcatcacagacctaggggctttgtgaaagtatgctagcaagcagaaatgagcaagcaaggcttcttacatttgctacattg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415359 360 +   2807050 catatccttttcgatgtcaggaggttacatattaatcactacatcaaattagctcagaagctacattgaagccgaactacatcaacgtttgggtgtatgagcagatctggttataggttacagaggtatccttcaatcagacgttatcttatgtgtagg-aaaaggcaaggactattattgcttatcttttaaggagtagagtgactcaggcaagagagatgggaggccgtgtgctcaatcttgttttgtctttgaagcatctttctggagagctgcaggtcatcacagactcaggggttttgtgaaagtatgctagcaagccgcaatgagcaagcgaggcttcttacatttgctacattg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708376 360 - 122973662 cacatccttttcgatgtcaggaggttacatattaatcactacattaaattagctcagaagctacactgaagccgaattacatcaacgtttgggtgtttgagcagatctggttataggttacagaggtatccttcaatcagacgttatcttatgtgtagg-aaaaggcaaggactatgattgcttatcttttaaggagtagagtgactcaggcaagagagatgggaggccgtgtgctcaatcttgttttgtctttgaagcatctttctggagagctgcaggtcatcacagaatcaggggctttgtgaaagtatgctagcgagcagaaatgagcaaacaaggcttcttacatttgctacattg
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      708728 356 -   1936607 CAtatccttttcaatgtcaggaggttatgtattaattaccacatcaaactagctcagaagccacattgaagccgaatttcatcaacttttgggtgtacgagcagatctggttataggatacagaggtatccttcaatcagacgttatcttatgtgtagg-aaaaggcaaggactatgattgcttatctttt---gagtagaatgactcaggcaagagagatgggaggccatgtgctcaatcttgttttgtctttgaagcatctttctggagagctgcaggtcatcacagaatc-ggggctttgtgaaagtatgctagcaagccgaaatgagcaaacaaggctccttacatttgctacattg
i colAng1.NW_012115555v1   I 641 C 0
s calJac3.chr4             138669031 358 - 171630274 catatcctttttgatgtcagtagtttacatattaatcagtgcatcaaactagctcagaagttacattgaaccgaaattacatcaacgtttggatgtatgagcagatctggtcataggttgcagaggtatccttcaatcagacattatcttatgtgtagg-aaaagacaagggctatgattgcttatcttttaagcagtagagtgactcaggcaagaca-atgggaagccgtgtgttcaatcttg-tttgtctttaaagcatctttcccgagagctgcaggtcatcacagactcaggggctttgtggaagtatgctagcaagaagaaatgagcaaacatggcttcttacgtttgctactttg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            222903 358 +   1154217 catatcctttttgatgtcagtaggttacatgttaatcagtgcatcagactagctcagaagttacattgaacctgaattacatcaacgtttggatgtatgagcaaatctggtcataggttacagacgtatccttcaatcagacattatcttatgtgtagg-aaaagggaaggactgtgattgcttatcttttaagaagaagagtgactcatgcaagagagatgggaggccgtgtgttcaatcctg-tttgcctctaaagcttctttcccgagagctgcaggt-atcacagactcaggggctgtgtggaagcatgccagcaagaagacatgagcaaacatggcttcttgcatttgctgctttg
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042614 358 +  15232693 catatcctttttgatgtcagtaggttacatattaatcagtgcatcaaactagctcagaagttacattgaacccgaataacatcaacgtttggatgtatgagcaaatctggtcataggttacagacgtatccttcaatcagacattatcttatgtgtagg-aaaaggcaaggactatgattgcttatcttttaagaagtagagtgactcaggcaagagagatgggaggtcatgtgttcaatcttg-tttgtctttaaagcttctttcccgagagctgcaggt-atcacagagtcaggggctttgtggaagtatgccagcaagaagaaatgagcaaacatggcttcttacatttgctactttg
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292028 360 +    446445 catatcctttttgatttcagtaggttacatattaatcagtgcatcaaactagctcagaagttacactgaacccgaattgcatcaacgtttggatgtatgagcagatctggtcataggttacagaggtatccttcaatcagacattatctcatgtgtaggaaaaaggcaaggactatgactgcttatcttttaagaagtagagtgactcaggaaagagagatgggaggccgtgtgttcaatcttg-ttcgtcttcaaagcttctttcccgagagctgcaggtcatcacagagtcaggggctttgtggaagtatgctagcaagaagacacgagcaaacatggcttcttacatttgctcctttg
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e canFam3.chr12             70394348  67 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15345813   0 -  18854210 C
e dasNov3.JH569424            500634 573 +    935526 I

a score=28100.000000
s hg38.chr6_KI270758v1_alt     46630 7 +     76752 tctcaca--
s panTro5.chr6             142749946 7 - 175400573 tctcaca--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898175 7 - 173848474 tctcaca--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415719 7 +   2807050 tctcaca--
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708736 7 - 122973662 tctcaca--
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709084 7 -   1936607 tctcaca--
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138669389 7 - 171630274 tctcata--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223261 7 +   1154217 tctcaca--
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042972 7 +  15232693 tctcaca--
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292388 7 +    446445 tctcaca--
i aotNan1.NW_018508875v1   C 0 C 0
s dasNov3.JH569424            501207 7 +    935526 --tcacaAA
i dasNov3.JH569424         I 573 C 0
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e canFam3.chr12             70394348 67 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15345813 0 -  18854210 C

a score=51959.000000
s hg38.chr6_KI270758v1_alt     46637 11 +     76752 ATATAACACGT
s panTro5.chr6             142749953 11 - 175400573 ATATAACACGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898182 11 - 173848474 ATATAACACGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415726 11 +   2807050 ATATAACACGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708743 11 - 122973662 ATATAACACGT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709091 11 -   1936607 ATATAACACTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138669396 11 - 171630274 ATATAACACAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223268 11 +   1154217 ATATAACCCAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042979 11 +  15232693 ATATAACACAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292395 11 +    446445 ATATAACACAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15345813 11 -  18854210 ATACCACACAT
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            501214 11 +    935526 ATACAACAGAT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e canFam3.chr12             70394348 67 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=20716.000000
s hg38.chr6_KI270758v1_alt     46648 5 +     76752 TAGGT
s panTro5.chr6             142749964 5 - 175400573 TAGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898193 5 - 173848474 TAGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415737 5 +   2807050 TAGGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708754 5 - 122973662 TAGGT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709102 5 -   1936607 TAGGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138669407 5 - 171630274 TAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223279 5 +   1154217 TAGAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042990 5 +  15232693 TAGAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292406 5 +    446445 TAGAA
i aotNan1.NW_018508875v1   C 0 I 243
s otoGar3.GL873550          15345824 5 -  18854210 TAGCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70394415 5 -  72498081 TAAGT
i canFam3.chr12            I 67 C 0
s dasNov3.JH569424            501225 5 +    935526 TAGGT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=36001.000000
s hg38.chr6_KI270758v1_alt     46653 8 +     76752 AAAGGGTT
s panTro5.chr6             142749969 8 - 175400573 AAAGGGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898198 8 - 173848474 AAAGGGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415742 8 +   2807050 GAAGGGTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708759 8 - 122973662 AAAGGGTT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709107 8 -   1936607 AAAGGGTT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138669412 8 - 171630274 AAAGGGTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223284 8 +   1154217 AAAGGGTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14042995 8 +  15232693 AAAGGGTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292654 8 +    446445 aaaGAGTT
i aotNan1.NW_018508875v1   I 243 C 0
s otoGar3.GL873550          15345829 8 -  18854210 AGGGGGTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70394420 8 -  72498081 AAGCAGTC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            501230 5 +    935526 AAAGG---
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4484885 110 + 123392446 I
e proCoq1.NW_012150019v1      154684 109 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=496137.000000
s hg38.chr6_KI270758v1_alt     46661 76 +     76752 GGATGTGATCAGTAATTGCAGAGAAATGGAGCCAAGCCCATTTC----ACTGACTGTGCAGGGGTTGA---TGTGGATTCTCT
s panTro5.chr6             142749977 76 - 175400573 GGATGTGACCAATAATTGCAGAGAAATGGAGCCAAGCCCATTTC----ATTGACTGTGCAGGGGTTGA---TGTGGATTCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898206 76 - 173848474 GGATGTGACCAATAATTGCAGAGAAATGGAGCCAAGCCCATTTC----ATTGACTGTGCAGGGGTTGA---TGTGGATTCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415750 76 +   2807050 GGATGTGACCAATAATTGCAGAGAAATGGAGCCAAGCCCATTTC----ATTGACTGTGCAGGGGTTGA---TGTGGATTCTCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708767 76 - 122973662 GGATGTGACCAATAATTGCAGAGAAATGGAGCCGAGCCCATTTC----ATTGACTGTGCAGGGGTTGA---TGTGGATTCTCT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709115 76 -   1936607 GGATGTGACCAATAATTGCAGAGAAATGAAGCCAAACCCGTTTC----ACTGACTGTGCAGGGGTTGA---TGTGGATTCTCT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138669420 76 - 171630274 GGATGTGACCAATAATTGCAGAAAAATGGAGCCAAGCCCATTTC----ATGGACTGTGAAGGGGTTGA---TGCAGATTGTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223292 76 +   1154217 GGATGTGAACAGTAATTGCAGAAAAATGGAATCAAGCCCATTTC----GTGGACTGTGAAGGGGTTGA---TGTGGATTCTCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043003 76 +  15232693 GGATGTGACCAATAATTGCAGAAAAATGGAGCCAAGCCTATTTC----ATGGACTGTGAAGGGGTTGA---TGTGGATTCTCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292662 76 +    446445 GGATGTGACCAATAATTGCAGAAAAATGGAGCCAAGCCCATTTC----ATGGACTGTGAAGGGGTTGA---TGTGGATTCTCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4484995 76 + 123392446 GGATGTGGTCAGTAACTGCGGAGAAATGGAGCCAAGCCCATCTC----ACTGGTTGTGAAGGGGTTGA---TGTGGATTCCTG
i micMur3.chr6             I 110 C 0
s proCoq1.NW_012150019v1      154793 76 +   1371726 GGATGTGGTCAATAACTGCCGAGAAATGGAGCCAAGCCCGTTGC----ACTGGTTGTGAAGGGGTTGA---TGTGGGTTCCTT
i proCoq1.NW_012150019v1   I 109 C 0
s otoGar3.GL873550          15345837 68 -  18854210 GGCTGTGACCGT--ACTGCAGAGAAATGGAGCCAAGCCGGGTTC----ACTGATTGCGAAGAGCTTGA---TGTGGA------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70394428 82 -  72498081 AGAAATGATCCGTAACCATAGAGAAATTGAACCAAATCCATTCC-TTGTTTGACTGTGGAGGCGCTGATGTTGTTGATTCCTC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            501235 73 +    935526 -------ATCAACAGCTACAGAGAAATTTAACCGCGCCCACTTTATCAATTGATGGGGAAGGGGTTGC---TCTTGATGTCCT
i dasNov3.JH569424         C 0 I 500
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=11549.000000
s hg38.chr6_KI270758v1_alt     46737 3 +     76752 GCT
s panTro5.chr6             142750053 3 - 175400573 GCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898282 3 - 173848474 GCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415826 3 +   2807050 GCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708843 3 - 122973662 GCT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709191 3 -   1936607 GGT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138669496 3 - 171630274 GCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223368 3 +   1154217 GCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043079 3 +  15232693 GTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292738 3 +    446445 GCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4485071 3 + 123392446 GTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      154869 3 +   1371726 GTC
i proCoq1.NW_012150019v1   C 0 C 0
s canFam3.chr12             70394510 3 -  72498081 ATT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15345905 0 -  18854210 C
e dasNov3.JH569424            501308 500 +    935526 I

a score=53093.000000
s hg38.chr6_KI270758v1_alt     46740 10 +     76752 AAGACTGCAT
s panTro5.chr6             142750056 10 - 175400573 AAGACTGCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898285 10 - 173848474 AAGACTGCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415829 10 +   2807050 AAGACTGCAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708846 10 - 122973662 AAGACTGCAT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709194 10 -   1936607 AAGACTGCAT
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138669499 10 - 171630274 AAGACTGCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223371 10 +   1154217 AAGACTGCAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043082 10 +  15232693 AAGACTGCAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292741 10 +    446445 AAGACTGCAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4485074 10 + 123392446 CACACTGCAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      154872 10 +   1371726 CACACTGCAC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15345905  3 -  18854210 -------CAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70394513 10 -  72498081 GTGGTTATGT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            501808 10 +    935526 AAGATGGTAT
i dasNov3.JH569424         I 500 C 0
e mm10.chr17                34355414 735 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1256557.000000
s hg38.chr6_KI270758v1_alt     46750 166 +     76752 AACCAATG--GAAGCCATGGAGTGTGCCGGGTGTGTCACAGCCTCACTTAGG------CA-CAGC-----GTTTCCTTGTCTTTGTTCCAGGGAGGATGGTGGATTTTCCAGGCTACAATCTGTCTGGTGCAGTCGCCTCCTTCCTATTCATCCTGCTGACAATGAAGCAGTCAGGTAGG
s panTro5.chr6             142750066 166 - 175400573 AACCAATG--GGAGCCATGGAGTGTGCCGGGTGTGTCACAGCCTCACTTAGG------CA-CAGC-----GTTTCCTTATCTTTGTTCCAGGGAGGATGGTGGATTTTCCAGGGTACAATCTGTCTGGTGCAGTCGCCTCCTTCCTATTCATCCTGCTGACAATGAAGCAGTCAGGTAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898295 166 - 173848474 AACCAATG--GAAGCCATGGAGTGTGCCGGGTGTGTCACAGCCTCACTTAGG------CA-CAGC-----GTTTCCTTGTGTTTGTTCCAGGGAGGATGGTGGATTTTCCAGGGTACAATCTGTCTGGTGCAGTCGCCTCCTTCCTATTCATCCTGCTGACAATGAAGCAGTCAGGTAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2415839 166 +   2807050 AACCAATG--GAAGCCATGGAGTGTGCCGGGTGTGTCACAGCCTCACTTAGG------CA-CAGG-----GTTTCCTTGTCTTTGTTCCAGGGAGGATGGTGGATTTTCCAGGGTACAATCTGTCTGGTGCAGTCGCCTCCTTCCTATTCATCCTGCTGACAATGAAGCAGTCAGGTAGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45708856 166 - 122973662 AACCAGTG--GAAGCCATGGAGTATGCTGGGTGTGTCACAGCCTCACTTAGG------CA-CAGG-----GTTTCCTTGTGTTTGTTCCAGGGAGGATGGTGGATTTTCCAGGGTACAGTCTGTCTGGTGCAGTCGCCTCCTTCCTATTCATCCTGCTGACAATGAAGCAGTCAGGTAGG
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709204 166 -   1936607 AACCAATG--GAAGCCATGGACTATGCTGGGTGTGTCACAGCCTCACTTAGG------CA-CAGG-----GTTTCCTTGTCTTTGATCCAGGGAGGATGGTGGATTTTCCAGGGTACAGTCGGTCTGGTGCAGTCGCCTCCTTCCTGTTCATCCTGCTGACAATGAAGCAGTCAGGTAGG
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138669509 161 - 171630274 AACCAGTG--GAAGCCATGGAGTATGCTGGGT-TGTCACAGTCTC----GGG------CA-CAGT-----GTTTCCTTGTGTTTGTTCCAGGGAGGATGGTGGATTTTCCAGGGTACAGTCTGTCTGGTGTAATTGCCTCCTTCTTCTTCATCCTGCTGACAATGAAGCAATCAGGTAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223381 165 +   1154217 AACCAGTG--GAAGTCATGGAGTATGCTGGGT-TGTCACAGTCTCACTTAGG------CA-CAGT-----GTTTCCTTGTGTTTGTTCCAGGGAGGATGGTGGATTTCCCAGGGTACAATCTGTCTGGTGTAATCGCCTCCTTCCTCTTCATCCTGCTGACGATGAAACAATCAGGTAGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043092 165 +  15232693 AACCAGTG--GAAGCCATGGAGCATGCTGGGT-TGTCACAGTCTCACTTAGG------CA-CAGT-----GTTTCCTTGTGTTTGTTCCAGGGAGGATGGTGGATTTTCCAGGGTACAGTCTGTCTGGTTTAATCGCCTCCTTCTTCTTCATCCTGCTGACAATGAAGCAATCAGGTAGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292751 162 +    446445 AACCAGTG--GAAGCCATGGAGTATGCTGGGT-TGTCACAGTCTC----AGG------CA-CAGT----CGTTTCCTTATGTTTGTTCCAGGGAGGATGGTGGATTTTCCAGGGTACAGTCTGTCTGGTGTAATCGCCTCCTTCTTCTTCATCCTGCTGACAATGAAGCAATCAGGTAGG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4485084 171 + 123392446 AACCGGCG--GGGACCGCGGAATGTGCTGGGTGTGTCACAGCCTCACTGAGG------CA-TAGCCATCCTTTCCCTTGTGTTTGTTCCAGGAAGCATGGTGAATTTCCCAGCACACAGTCTGTCTGGTGTGGTCACCTCCTTCCTCTTCATCCTGCTGACCATGAAGCAGTCAGGTAGG
i micMur3.chr6             C 0 I 757
s proCoq1.NW_012150019v1      154882 171 +   1371726 AACCAGTG--GGGACCGCGGAGTGTGCTGGCTGTGTCACAGCCTCACTGAGG------CA-CAGTCATCCTTTCCCTCGTGTTTGCTCCAGGAAGCATGGTGAATTTTCCAGGGCACAGTCTGTCTGGTGTGGTCGCCTCCTTCTTCTTCATCCTGCTGACCATGAAGCAGTCAGGTAGG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15345908 170 -  18854210 AGCCAG-G--GAAGCCATGGAGTCTCCTGGGCTTGTCACAGCCTCACTGAGG------CA-CCGTCACACTTTCCCTTGTGTTTGCTCCAGGGAGCATGGTGAACTTCCCAGGGTCCAGTCTGTGTGCTGTGGCCGCCTCCTTCTTCTTCGTCCTGCTGACCGTGAGGCAGTCAGGTAGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34356149 156 +  94987271 AACCAATGCAGAAACTGCAAGGCATGGTGGGT-AATCACAGCTGTAC-----------------------TTTCTTCTATGTTTGCTCCAGGGAGGATGGTGGATTGCCCACGGTATAGTCTATCTGGCGTGGCTGCCTCCTTCCTCTTCGTCCTGCTGACTATAAAGCACCCAGGTAGG
i mm10.chr17               I 735 C 0
s canFam3.chr12             70394523 172 -  72498081 AGCTGTTG--AAAACCACAAAGTGAGCTTGCTCCATTATAGCCTCATTTGGGTGTACTCA-TATT-----TTTCTCTTGTGTTTTTTGCAGGGAGAATGGTGGATTTTCCAGGATACAGTCTGTCAGGTGCAGTTGCCTCTTTCTTCCTTGTGCTGCTCACCATGAGACAGCCAGGTAGA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            501818 160 +    935526 AAGCAGAG--GAAA-----------GCTTGGTGTATTA-AGCCTCATTTAGG------CACCAGTCCTTTTTTCTCTTGTGCTTGCTCCAGGAAAGATGCTGAATTTTCTAGGGTACAGCCTGTCTGGTGCAGCTGTTTCATTCTTCTTCATCCTGCTCACCATTAAGCCATCAGGTAAG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=71520.000000
s hg38.chr6_KI270758v1_alt     46916 13 +     76752 ATTCCCTTCTCCC-
s panTro5.chr6             142750232 13 - 175400573 ATTCCCTTCTCCC-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898461 13 - 173848474 ATTCCCTTTTCCC-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416005 13 +   2807050 ATTCCCTTCTCCC-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709022 13 - 122973662 ATTCCTTTCTCCC-
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709370 13 -   1936607 ATTCCCTTCTCCC-
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138669670 13 - 171630274 ATTCCTTTCTCCC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223546 13 +   1154217 ATTCCTTTCTCCC-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043257 13 +  15232693 ATTCCTTTCTCCC-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292913 13 +    446445 ATTCCTTTCTCCT-
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      155053 13 +   1371726 ACGCCCTGCTCCC-
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15346078 13 -  18854210 ACCCCCTCCCTCC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34356305 13 +  94987271 GTCCCTTCCTACC-
i mm10.chr17               C 0 I 751
s canFam3.chr12             70394695 13 -  72498081 ATGCCGGTCTTCT-
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            501978 13 +    935526 -CTTTTGTCTCCCC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=189769.000000
s hg38.chr6_KI270758v1_alt     46929 35 +     76752 TTTAC---TGT---ATAGTCTAATGTCCCAGTGAGCTAGTC
s panTro5.chr6             142750245 35 - 175400573 TTTAC---TGT---ATAGTCTAATGTCCCAGTGAGCTAGTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898474 35 - 173848474 TTTAC---TGT---ATAGTCTAATGTCCCAGTGAGCTAGTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416018 35 +   2807050 TTTAC---TGT---ATAGTCTAATGTCCCAGTGAGCTAGTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709035 35 - 122973662 TTTAC---TGT---ATAGTCTAATGTCCCAGTGAGCTAGTT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709383 35 -   1936607 TTCAC---TGT---ATAGTCTAATGTTCCAGTGAGCTAGTC
i colAng1.NW_012115555v1   C 0 C 0
s calJac3.chr4             138669683 35 - 171630274 TTTAC---TGT---ATAGTCTAAAGTCCCAGGGAGCTAGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223559 35 +   1154217 TTTAC---TGT---ATAGTCTAACGTCCCAGGGAGCTAGCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043270 35 +  15232693 TTTAC---TAT---ACAGTCTAAAGTCCCAGGGAGCTAGCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292926 35 +    446445 TTTAC---TGT---ATAGTCTAAAGTCCCAGGGAGCTAGCC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      155066 35 +   1371726 TTTAC---TGT---GTACTTTAACCTCCCAGTGAGCCAGTC
i proCoq1.NW_012150019v1   C 0 I 296
s otoGar3.GL873550          15346091 41 -  18854210 TCTGCACGTGTAACGTGCTCTCACGTACCAGGCAGCCAGTC
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70394709 35 -  72498081 TTTAC---TGT---ATACCCCGATGCCCCAGCAATACAGTC
i canFam3.chr12            I 1 I 14
s dasNov3.JH569424            501991 33 +    935526 TTCAT---TGT---TC--TCTGATGCCCCAGTGATCCAGTC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=219840.000000
s hg38.chr6_KI270758v1_alt     46964 76 +     76752 TGGG-------------TCCAAAGGTCGAGA---------------ACAACAT----CTAAGAGTGTAAGT-CTGGGGCCAAGCCACC--------TGTATCC--AAAAAGGAACTCCT
s panTro5.chr6             142750280 76 - 175400573 TGGG-------------TCCAAAGGTCTAGA---------------ACAACAT----Ctaagagtgtaagt-ctggggccaagccacc--------tgtatcc--aaaaaggaactcct
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898509 76 - 173848474 TGGG-------------TCCAAAGGTCTAGA---------------ACAACAT----Ctaagagtgtaagt-ctggggccaagccacc--------tgtatcc--aaaaaggaactcct
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416053 65 +   2807050 TGGG-------------TCCAAAGGTCTAGA---------------ACAACAT----CTAAGAGTGTAAGC------------CCACC--------TGTATCC--AAAAAGGAACTCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709070 76 - 122973662 TGGG-------------TCCAAAGGTCTAGA---------------ACAACAT----CTAAGAGTGTAAGT-CTGGGGCTAAGGCACC--------TGTATCC--AAAAAGGAACTCCT
i nomLeu3.chr1a            C 0 C 0
s colAng1.NW_012115555v1      709418 76 -   1936607 TGGG-------------TCCACAGGTCTAGA---------------ACAACAT----CTAAGAGTGTAAGT-CTGGGGCCAAGCCACC--------TGTATGC--AAAAAGGAACTCCT
i colAng1.NW_012115555v1   C 0 N 0
s calJac3.chr4             138669718 77 - 171630274 TAGG-------------TCCAAAGGTCTAGA---------------ACAACAT----CTAAGCATGTAAGTCCTGGGGCCAACACACC--------TGTGTCC--AAAAAGGAGCTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223594 84 +   1154217 TGGG-------------TCCAGAGGTCTAGA---------------AGAACAT----CTAAGCGTGTAAGT-CTGGGGCCTACGCACCTCCGTAGGTGAGTAG--AAGGaggaactcct
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043305 76 +  15232693 TGGG-------------TCCAAAGGTCTAGA---------------ACAACAT----CTAAGCATGTAAGT-CTGAGGCCTACGCACC--------TGTGTCC--AAGAAGGAACTCCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      292961 63 +    446445 TGGG-------------TCCAAAGGTCTAGA---------------ACAACAT----CTAAG--------------GGCCAATGCACC--------TGTGTCC--AAGAAGGAACTCCT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15346133 85 -  18854210 TGCGCAGAGTTCTAAACTCAAAAGGACTAG------------------GACAT----CTGAGAGTGAAGGT-CCAGCGCCCAGGCCCC--------TGTGTTCCTAAAAGGGAAct---
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70394758 53 -  72498081 CAGA-------------TCAAAAGGGATAGG---------------ACaatattggactgagtgtccaaga------accaaagcat--------------------------------
i canFam3.chr12            I 14 C 0
s dasNov3.JH569424            502024 79 +    935526 TAGA-------------AGCAGAAATCTAAACCTAAAACGGAGagtacaacat----ttaatagtggcgcttccggggccaaa-------------tgtgtgt----------gttcct
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e proCoq1.NW_012150019v1      155101 296 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=767752.000000
s hg38.chr6_KI270758v1_alt     47040 209 +     76752 CACTTTTG------------------AGGAGCTCCtccactcccaggagctcctccactcctagctgagtcacctttggaaagttacttgagcacctcataccttagttctttcatctttttaa-tgagaataacagcagtaactacatctcagaggccagcacaggctttaggattaaatgaga-----cattaaaagcacttgaatcagtggttgCACCACGTTAAATTAT
s panTro5.chr6             142750356 191 - 175400573 cacttttg------------------aggagctcctccactcc------------------tagctgagtcacctttggaaagttacttgagcacctcataccttagttctttcatctttttaa-tgagaataacagcagtaactacatctcagaggccagcacaggctttaggattaaatgaga-----cattaaaagcacttgaatcagtggttgcacCACGTTAAATTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898585 191 - 173848474 cacttttg------------------aggagctcctccactcc------------------tagctgagtcacctttggaaagttacttgagcacctcataccttagttctttcatctttttaa-tgagaataacagcagtaactacatctcagaggccagcacaggctttaggattaaatgaga-----cattaaaagcacttgaatcagtggttgcacCACGTTAAATTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416118 209 +   2807050 CACTTTTG------------------AGGAGCTCCtccactcccaggagctcctccactcctagctgagtcacctttggaaagttacttgagcacctcataccttagttctttcatctttttaa-tgagaataacagcagtaactacatctcagaggccagcacaggctttaggattaaatgaga-----cattaaaagcacttgaatcaatggttgcacCACGTTAAATTAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709146 209 - 122973662 CACTTTTG------------------AGGAGCTTCTCCACTCCCAGcagctcctccactcctagctgagtcacctttggaaagttacttgagcacctcatgccttagttctttcatctttttaa-tgagaataacagcagtaactacatctcagaggccagcacaggctttaggattaaatgaga-----cattgaaagcacttgaatcagtggttgcacCACGTTAAATTAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138669795 227 - 171630274 GACTTTTGAGGAACTCCTCCAATCCCAGGAGCTCCTCCACTCCCAGGAgctcctccactcctagctgagtcacctctggaaagttacttgagcacctcatgccttagttcttccatctttttaa-tgagaatagcagtagtaactatgtctaagaggccagcacaggctttaggactaaataaga-----cattaaaagcacttgaacaagtggctgCACCATGTTAAATTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223678 191 +   1154217 gacttttg------------------------------------aggagctcctccactcctggctgagtcacctttggaaagttacttgagcacttcatgccttagttctttcatctttttaa-tgagaatagcagtagtaactatgtctcagaggccagcacaggctttaggactaaatgaga-----cattaaaagcacttgaaccagtggttgcacCACATTAAATTAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043381 209 +  15232693 GACTTTTA------------------AGGAGCTCCtccactcccaggagctcctccactcctagctgaatcacctttggaaagttacttgagcacttcgtgccttagttctttcatctttttaa-tgagaataacagtagtaactatgtcccagaggccagcacaggctttaggactaaatgaga-----cattaaaagcacttgaaccagtggttgcaccatgttaaattct
i cebCap1.NW_016107339v1   C 0 I 13
s aotNan1.NW_018508875v1      293024 202 +    446445 GACTTTTG------------------AGGAGCTCCTCCACTCCCAGGAGCTC-----CTCctagctgagtcacctttggaaagtcacttgagcacctcatgccttagttctttcatc-ttttaa-tgagaatagcagtagtaaccatgtctcagaggccagcacaggctttaggactaaatgaga-----ca-taaaagcacttgaaccagtggttgTACCATGTTAAATTAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15346218 177 -  18854210 ------------------------------------------------gattctccacgcccagccgtggcgccttttgaaagtgactggagcactttgtgcctcagcctcttcatctttatga-tgagaataacaacagtccccacgtgggagaggccagcggaggctttgggcttaaatgaga-----tgtggaaagcgc-tgagtcagt-gctggAGCGCGTCAGTGTCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70394811 185 -  72498081 ----------------------------------ctgtgttcc-agagggtcctcaacttccagctgtgttacctttgaaaagttacttgagtgccttctgccttagtttcctcatctttgcaa-taagaataacaaca-tacctatgtcttataggctaggacaggctttagaattaaatgagg-----ct------gcacatgaagtagtatttagaacaCATTAAGTTAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502103 188 +    935526 ------------------------------------------aaaagtgcacctccaattccagctgtatgactttaggaaaagtattcga--acctc-tgccccagtttcttcatctttatgagtaggactaataacagtacctacgtctcataggctagcacaagatttgggattaaatgagatcattcacaaaaagcgcttgaatcagtgcctggaacatagtaaATTTT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e proCoq1.NW_012150019v1      155101 296 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=15687.000000
s hg38.chr6_KI270758v1_alt     47249 5 +     76752 TAATT
s panTro5.chr6             142750547 5 - 175400573 TAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898776 5 - 173848474 TAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416327 5 +   2807050 TAATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709355 5 - 122973662 TAATT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670022 5 - 171630274 TAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223869 5 +   1154217 TAATT
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      293226 5 +    446445 TAATT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15346395 5 -  18854210 TCATC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70394996 5 -  72498081 TCATC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502291 4 +    935526 -TATC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e cebCap1.NW_016107339v1    14043590 13 +  15232693 I
e proCoq1.NW_012150019v1      155101 296 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1295.000000
s hg38.chr6_KI270758v1_alt     47254 10 +     76752 CACTCT-------------------------AGTA
s panTro5.chr6             142750552 10 - 175400573 CACTCT-------------------------AGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898781 10 - 173848474 CACTCT-------------------------AGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416332 10 +   2807050 CACTCT-------------------------AGTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709360 10 - 122973662 CACTCT-------------------------AGTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670027 27 - 171630274 CACTCT-------CCTGCTTCCA-ACAGGACAGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223874 27 +   1154217 CACTCT-------CCTGCTTCTA-ACAGGACAGTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043603 10 +  15232693 -------------------------CAGGACAGTA
i cebCap1.NW_016107339v1   I 13 C 0
s aotNan1.NW_018508875v1      293231 27 +    446445 CATTCT-------CTTGCTTCCA-ACAGGACAGTA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15346400 34 -  18854210 CATCCTCGCACTTCCAGCCTCCA-GCCGCACAGCC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70395001 28 -  72498081 TATTTT-------TCTGTCTCCATGCAGGACAGCA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502295 27 +    935526 CATTCT-------CCTGCTTCCGTGCAGTT-AGCA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e proCoq1.NW_012150019v1      155101 296 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=259541.000000
s hg38.chr6_KI270758v1_alt     47264 44 +     76752 CTTTGGGGTCAAGAAATGCAGCTGCTTCTTATCATAAATTAAGC
s panTro5.chr6             142750562 44 - 175400573 CTTTGGGGTCAAGAAATGCAGCTGCTTCTTACCATAAATTAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898791 44 - 173848474 CTTTAGGGTCAAGAAATGCAGCTGCTTCTTACCATAAATTAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416342 44 +   2807050 CTTTGGGGTCAAGAAATGCAGCTGCTTCTTACCATAAATTAAGC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709370 44 - 122973662 CTTTGGGGTCAAGAAATGCAGCTGCTTCTTACCATAAATTAAGC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670054 44 - 171630274 CTTTGGGGTCAAGAAATGCAGTTGCTTCTTACCATAAATTTGGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223901 44 +   1154217 CTTTGGGGTCAAGAAATGCAGCTGCTTCTTACTATAAATTAAGC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043613 44 +  15232693 CTTTGGGGTCAAGAAATGCAGCTGCTTCTTACCATGAATTAAGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      293258 44 +    446445 CTTTGGGGTCAAGAAATGCAGCTGCTTCTTACCATAAATTAAGC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      155397 44 +   1371726 CTTTGGGGACAAGAAAAGCAGCTGCTTCTTGCCATAAATTAAGC
i proCoq1.NW_012150019v1   I 296 I 250
s otoGar3.GL873550          15346434 44 -  18854210 CTTTGACGGCAAGAAAAGCAGCTGCTTCTCATCATAAACTAATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70395029 44 -  72498081 CTTTGGGAACAAGAAAAATGGCTGCTTCTTACCATCAATTAAGC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502322 44 +    935526 CTCTGGTGGCAAGAAGAGCTGCTGCCTCTCACTGTAAATTCAGC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=6408.000000
s hg38.chr6_KI270758v1_alt     47308 5 +     76752 --TGCAA
s panTro5.chr6             142750606 5 - 175400573 --TGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898835 5 - 173848474 --TGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416386 5 +   2807050 --TGCAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709414 5 - 122973662 --TGCAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670098 5 - 171630274 --TGCaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223945 5 +   1154217 --TGCaa
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14043657 5 +  15232693 --TGCAA
i cebCap1.NW_016107339v1   C 0 I 541
s aotNan1.NW_018508875v1      293302 5 +    446445 --TGCAA
i aotNan1.NW_018508875v1   C 0 I 55
s otoGar3.GL873550          15346478 3 -  18854210 --TCC--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70395073 3 -  72498081 --AGC--
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502366 5 +    935526 AGTGT--
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=59672.000000
s hg38.chr6_KI270758v1_alt     47313 43 +     76752 TTAAAAAAA---ATACTTGGAAATAAGAAATTAG------------AAGAAAGGGACT
s panTro5.chr6             142750611 42 - 175400573 TTAAAAAAA----TACTTGGAAATAAGAAATTAG------------AAGAAAGGGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898840 42 - 173848474 TTTAAAAAA----TACTTGGAAATAAGAAATTAG------------AAGAAAGGGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416391 42 +   2807050 TTAAAAAAA----TACTTGGAAATAAGAAATTAG------------AAGAAATGGACT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709419 54 - 122973662 TTAAAAAAA---ATACTTGGAAATAAGAAATTAGAAGAAGACCTCCAAGAAATGGAC-
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670103 54 - 171630274 ---aaaaattaaataaataaaaataaGAAATTAGAAGGCAACCTCGAAGAAATAGAC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            223950 54 +   1154217 ---aaaaaataaataaataaaaataaGAAATTAGAAGGAGACCTCGAAGAAATGGAC-
i saiBol1.JH378315         C 0 C 0
s otoGar3.GL873550          15346481 33 -  18854210 --TTAGTAA----TACCTGGAAATAAGAGACTAG------------AGGGA-------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70395076 33 -  72498081 --ATAAAAA----TACTTGGAAACAAGAAATTAG------------AAATT-------
i canFam3.chr12            C 0 I 8
s dasNov3.JH569424            502371 49 +    935526 ----AAAAA----TACTTGGAAATAATAGGCTAGAAGGGGGCTTC-AACAGATGGACT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e cebCap1.NW_016107339v1    14043662 541 +  15232693 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e aotNan1.NW_018508875v1      293307 55 +    446445 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=151805.000000
s hg38.chr6_KI270758v1_alt     47356 59 +     76752 TTGGAAATCTCACTAGCTGAATTTTGAC-GTCAAAATGTTGCACCTTGAAAAATAATTA-T
s panTro5.chr6             142750653 59 - 175400573 TTGGAAATCTCACTAGCTGAATTTTGAC-GTCAAAATGTCGCTCCTTGAAAAATAATTA-T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898882 59 - 173848474 TTGGAAATCTCACTAGCTGAATTTTGAC-GTCAAAATGTTGCACCTTGAAAAATAATTA-T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416433 59 +   2807050 TTGGAAATCTCACTAGCTGAATTTTGAC-GTCAAAATGTTGCACCTTGAAAAATAATTA-T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709473 60 - 122973662 TTGGAAATCTCACTAGCTGAATTTTGACAGTCAAAATGTTGCACCTTGAAAAATAATTA-T
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670157 59 - 171630274 TTGGAAATCTCACTAGCCAAATTTTGTC-AGTCAAACGTTCCACCTTGAAAAAGAATTAT-
i calJac3.chr4             C 0 I 396
s saiBol1.JH378315            224004 58 +   1154217 TCGGAAATCTCACTAGCCGAATTTTGTC-TGTTAAATGTTGCACCTCGAAAAAGAATTA--
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      293362 58 +    446445 TTGGAAATCTCACTAGCCGAATTTTGTC-AGTCAAATGTTGCACCTTGAAAAAGAATTA--
i aotNan1.NW_018508875v1   I 55 C 0
s otoGar3.GL873550          15346514 57 -  18854210 ---GACATCCCCCAAACAGACCTTTGTCAGTTAAAGTGTTGCACCTTGGAAGAGAATTA-T
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70395117 43 -  72498081 TTGGAAATCTCACTGGCTGAA-----------------TTGTACCTTATAAAAAGATTA-T
i canFam3.chr12            I 8 C 0
s dasNov3.JH569424            502420 56 +    935526 -TGGAAATGTCAGGAGCTGAATTATGTCTGCCAAAACATTGTA-ATTGAAAAGGGATT---
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e cebCap1.NW_016107339v1    14043662 541 +  15232693 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=35105.000000
s hg38.chr6_KI270758v1_alt     47415 14 +     76752 TTAAAAATTCAGTG
s panTro5.chr6             142750712 14 - 175400573 TTAAAAATTCAGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898941 14 - 173848474 TTAAAAATTCAGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416492 14 +   2807050 TTAAAAATTCAGTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709533 14 - 122973662 TTAAAAATTCAGTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670612 13 - 171630274 ttaaaagtttaat-
i calJac3.chr4             I 396 C 0
s saiBol1.JH378315            224062 13 +   1154217 -TAAAAATTCAGTG
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      293420 13 +    446445 -TAAAAATTCAGTG
i aotNan1.NW_018508875v1   C 0 I 415
s dasNov3.JH569424            502476 14 +    935526 TTGAAAATTCACTG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e cebCap1.NW_016107339v1    14043662 541 +  15232693 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e canFam3.chr12             70395160  0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15346571  0 -  18854210 C

a score=1179.000000
s hg38.chr6_KI270758v1_alt     47429 1 +     76752 T
s panTro5.chr6             142750726 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898955 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416506 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709547 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378315            224075 1 +   1154217 t
i saiBol1.JH378315         C 0 I 415
s dasNov3.JH569424            502490 1 +    935526 C
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e cebCap1.NW_016107339v1    14043662 541 +  15232693 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e aotNan1.NW_018508875v1      293433 415 +    446445 I
e calJac3.chr4             138670625 0 - 171630274 C
e canFam3.chr12             70395160 0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15346571 0 -  18854210 C

a score=-2724.000000
s hg38.chr6_KI270758v1_alt     47430 7 +     76752 CAAAAAA
s panTro5.chr6             142750727 7 - 175400573 CAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898956 6 - 173848474 C-AAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416507 6 +   2807050 C-AAAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709548 4 - 122973662 C---AAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670625 6 - 171630274 -taaaaa
i calJac3.chr4             C 0 I 1
s dasNov3.JH569424            502491 2 +    935526 -CA----
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e cebCap1.NW_016107339v1    14043662 541 +  15232693 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e aotNan1.NW_018508875v1      293433 415 +    446445 I
e canFam3.chr12             70395160 0 -  72498081 C
e saiBol1.JH378315            224076 415 +   1154217 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15346571 0 -  18854210 C

a score=5359.000000
s hg38.chr6_KI270758v1_alt     47437 3 +     76752 AAA
s panTro5.chr6             142750734 3 - 175400573 AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898962 3 - 173848474 AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416513 3 +   2807050 AAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709552 3 - 122973662 AAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670632 2 - 171630274 -aa
i calJac3.chr4             I 1 I 10
s aotNan1.NW_018508875v1      293848 3 +    446445 AAA
i aotNan1.NW_018508875v1   I 415 C 0
s otoGar3.GL873550          15346571 2 -  18854210 -GG
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70395160 3 -  72498081 GAA
i canFam3.chr12            C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e cebCap1.NW_016107339v1    14043662 541 +  15232693 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e saiBol1.JH378315            224076 415 +   1154217 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            502493 0 +    935526 C

a score=6505.000000
s hg38.chr6_KI270758v1_alt     47440 3 +     76752 AAA
s panTro5.chr6             142750737 3 - 175400573 AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898965 3 - 173848474 AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416516 3 +   2807050 AAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709555 3 - 122973662 AAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670644 2 - 171630274 -CA
i calJac3.chr4             I 10 I 1
s saiBol1.JH378315            224491 2 +   1154217 -AA
i saiBol1.JH378315         I 415 I 1
s aotNan1.NW_018508875v1      293851 2 +    446445 -AA
i aotNan1.NW_018508875v1   C 0 I 1
s otoGar3.GL873550          15346574 2 -  18854210 -AA
i otoGar3.GL873550         I 1 I 1
s canFam3.chr12             70395163 2 -  72498081 -AA
i canFam3.chr12            C 0 I 1
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e cebCap1.NW_016107339v1    14043662 541 +  15232693 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            502493 0 +    935526 C

a score=264277.000000
s hg38.chr6_KI270758v1_alt     47443 62 +     76752 TCAGTGTCAGAAGGAGATGTCAGAGCCCTAAGGAAAATGCAGCATGGC-GAAGTGGGAAAAAA
s panTro5.chr6             142750740 62 - 175400573 TCAGTGTCAGAAGGAGATGTCAGAGCCCTAAGGAAAATGCAGCATGGC-GAAGTGGGAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140898968 62 - 173848474 TCAGTGTCAGAAGGAGATGTCAGAGCCCTAAGGAAAATGCAGCATGGC-GAAGTGGGAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416519 61 +   2807050 TCAGTGTCAGAAGGAGATGTCAGAG-CCTAAGGAAAATGCAGCATGGC-GAAGTGGGAAAAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709558 62 - 122973662 TCAGTGTCAGAAGGAGATGTCAGAGCCCTGAGGAACATGCAGCATGGC-GCAGTGGGAAAAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670647 62 - 171630274 TCAGTGTCAGAGGCAGTTGTCAGAGCCCCAAGGAAAATGCAGCATGGC-AATGTGGAAAAAAA
i calJac3.chr4             I 1 I 2
s saiBol1.JH378315            224494 62 +   1154217 TCAGTGTCAGAGGGAGATGTCAGAGCCCCAAGGAAAATGCAGCATGGC-AAAGTGGGAAAAAA
i saiBol1.JH378315         I 1 I 2
s cebCap1.NW_016107339v1    14044203 62 +  15232693 TCAGTGTCAGAGGGAGATGTCAGAGTCCCAAGGAAAATGCAGCATGGC-AAAGTGGGAAAAAA
i cebCap1.NW_016107339v1   I 541 I 30
s aotNan1.NW_018508875v1      293854 62 +    446445 TCAGTGTCAGAGGGAGATGTCAGAGCCCCAGGGAAAATGCACCATGGC-AGAGTGGGAAGAAA
i aotNan1.NW_018508875v1   I 1 I 31
s otoGar3.GL873550          15346577 61 -  18854210 TCAGCGTCCGAGGGGGATATTTGAGCCCCACGGAAAATGCCACGTGG--GAAGTGAGGGAACA
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70395166 62 -  72498081 TCAGTGTCAGAGGGAAATATCAGAGTCCCCAGAAAAGTACAgcaaagcagaagtggaaaaaa-
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            502493 51 +    935526 ---------GAAGAAAATATCAGAGTCTCAAGGAAAAAgcagcaaggc-caagtgggaaaa--
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=69174.000000
s hg38.chr6_KI270758v1_alt     47505 66 +     76752 CACGACACAGAGCATCAGAGGGCGCAGGCTCT--GCCTCGGCACCGCAGAGCTGGTGTGTCTGCCTCG
s panTro5.chr6             142750802 66 - 175400573 CACGACACAGAGCATCAGAGGGCGCAGGCTCT--GCCTCGGCACCGCAGAGCTGGTGTGTCTGCCTCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899030 66 - 173848474 CACGACACAGAGCATCAGAGGGCGCAGGCTCT--GCCTCGGCACCGCAGAGCTGGTGTGTCTGCCTCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2416580 66 +   2807050 CACGACACAGAGCATCAGAGGGCGCAGGCTCT--GCCTCGGCACCGCAGAGCTGGTGTGTCTGCCTCG
i gorGor5.CYUI01000036v1   C 0 I 418
s nomLeu3.chr1a             45709620 40 - 122973662 CACTGGACAGAGCGTCCGAGGGCGCAGGCTGT--GCCTCGGC--------------------------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670711 46 - 171630274 CACTGGACAGGGCATAAGAGGGCACGGGCTCT--GCCTGGGCACTGCA--------------------
i calJac3.chr4             I 2 C 0
s saiBol1.JH378315            224558 46 +   1154217 CACTGGCCAGGGCATGAGAGGGCACGGGCTCT--GCCGTGGCACTGCA--------------------
i saiBol1.JH378315         I 2 C 0
s otoGar3.GL873550          15346638 40 -  18854210 CGCTGGGCAGGGCACCAGAAGCCACTGGCTGCAGGCTTCA----------------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70395228 38 -  72498081 cagtggacaggggaccagaag-cgcaggctcc--agactga---------------------------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502544 39 +    935526 cattggaaagggaatcaggagacacaggctct-gggctca----------------------------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e cebCap1.NW_016107339v1    14044265 30 +  15232693 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e aotNan1.NW_018508875v1      293916 31 +    446445 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=8395.000000
s hg38.chr6_KI270758v1_alt     47571 19 +     76752 GTGCCGCAGAGCTGGTGTG
s panTro5.chr6             142750868 19 - 175400573 GCGCCGCAGAGCTGGTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899096 19 - 173848474 GCGCCGCAGAGCTGGTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417064 19 +   2807050 GCGCCGCAGAGCTGGTGTG
i gorGor5.CYUI01000036v1   I 418 C 0
s canFam3.chr12             70395266  7 -  72498081 gggctgc------------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502583  7 +    935526 gtgctgc------------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e cebCap1.NW_016107339v1    14044265 30 +  15232693 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e aotNan1.NW_018508875v1      293916 31 +    446445 I
e calJac3.chr4             138670757  0 - 171630274 C
e saiBol1.JH378315            224604  0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15346678  0 -  18854210 C
e nomLeu3.chr1a             45709660  0 - 122973662 C

a score=79301.000000
s hg38.chr6_KI270758v1_alt     47590 48 +     76752 TCTGCCTTGGCGCTGCAGAGCTGGTGTGATGTG--ATGAAGCTG-CTGGCT
s panTro5.chr6             142750887 48 - 175400573 TCTGCCTCGGCGCCTCAGAGCTGGTGTGATGTG--ATGAGGCTG-CTGGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899115 48 - 173848474 TCTGCCTCGGCGCCTCAGAGCTGGTGTGATGTG--ATGAGGCTG-CTGGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417083 48 +   2807050 TCTGCCTCGGCGCCTCAGAGCTGGTGTGATGTG--ATGAGGCTG-CTGGCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709660 37 - 122973662 -----------GCTGCAGAGCTGGTGTGATGCG--ATGAGGCTG-CTGGCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670757 28 - 171630274 --------------------CTGGTGTGCTGTG--ATGAGGCTG-CTGCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            224604 31 +   1154217 -----------------GAGCTGGTGCGGCGCA--ATGAGGCTG-CCGCCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044295 48 +  15232693 TCTGCCTCAGCCctgcagcgctggtgtggtgtg--atgaggctg-ctgcct
i cebCap1.NW_016107339v1   I 30 C 0
s aotNan1.NW_018508875v1      293947 48 +    446445 TCTGCCTCGGCACTGCAGAACTGGTGTGGTGTG--ATGAGGCTG-CTGCCT
i aotNan1.NW_018508875v1   I 31 C 0
s otoGar3.GL873550          15346678 21 -  18854210 -----------GCTGCAGAATCCCTGCGCTCC-------------------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70395273 35 -  72498081 ---------------cagaagctatgtaatgtggcaggaggctgtccagc-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502590 33 +    935526 ---------------cataagctatggaatacc--atgaggttg-ctgtct
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e proCoq1.NW_012150019v1      155441 250 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=122106.000000
s hg38.chr6_KI270758v1_alt     47638 33 +     76752 TCTCTGTGCTTGTGCTGCAGCTCCC---TACCCTGT
s panTro5.chr6             142750935 33 - 175400573 TCTCTGTGCTTGTGCTGCAGCTCCC---TACCCTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899163 33 - 173848474 TCTCTGTGCTTGTGCTGCAGCTCCC---TACCCTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417131 33 +   2807050 TCTCTGTGCTTGTGCTGCAGCTCCC---TACCCTGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709697 33 - 122973662 TCTCTGCACTTGTGCTGCAGCTCCC---TACCCTGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670785 33 - 171630274 TCTCTGGGCTCGTGCTGCAGCTCCC---TACCCTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            224635 32 +   1154217 TCTCTGTGCTTCTGCTGCAGC-CCC---AACCCTGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044343 32 +  15232693 gctctgcgct-gtgctgcagctCCC---TACCCCGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      293995 33 +    446445 TCTCTGCGCTTCTGCGGCAGCTCCC---TACCCCGT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      155691 33 +   1371726 TCTCTGTGCTCGTGCTGCAGGTCCC---CACCCTGT
i proCoq1.NW_012150019v1   I 250 I 125
s otoGar3.GL873550          15346699 35 -  18854210 TCTCCGGGCT-GTGCTGCACGGCCCCCTCATCCTGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70395308 29 -  72498081 cctctgtataaat----caatttcc---taacctgt
i canFam3.chr12            C 0 I 3
s dasNov3.JH569424            502623 32 +    935526 -tcctctcgtggtgcttcaagttct---tagtccgt
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=414910.000000
s hg38.chr6_KI270758v1_alt     47671 112 +     76752 AACAGTCAATCTGATGGAATGTCTTCAGTTCTAGCTTCATATTTAGACTTCATCAATGAAGAATACAAGCAGATCTCCACTTAGGCTCTTTAGCCACCTTTTGAGCAGCATC
s panTro5.chr6             142750968 112 - 175400573 AACAGTCAATCTGATGGAATGTCTTCAGTTCTAGCTTCATATTTAGACTTCATCAATGAAGAATACAAGCAGATCTCCACTTAGGCTCTTTAGCCACCTTTTGAGCAGCATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899196 112 - 173848474 AACAGTCAATCTGATGGAATGTCTTCAGTTCTAGCTTCATATTTAGACTTCATCAATGAAGAATACAAGCAGATCTCCACTTAGGCTCTTTAGCCACCTTTTGAGCAGCATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417164 112 +   2807050 AACAGTCAATCTGATGGAATGTCTTCAGTTCTAGCTTCATATTTAGACTTCATCAATGAAGAATACAAGCAGATCTCCACTTAGGCTCTTTAGCCACCTTTTGAGCAGCCTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709730 112 - 122973662 AACAGTCAATCTGATGGAATGTCTTCAGTTCTAGCTTCATATTTAGACTTCATCAATGAAGAATACAAGCAGATCTCCACTTAGGCTCTTTAGCCACCTTTTGGGCAGCATC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670818 105 - 171630274 AACAGTCAATCCGATGGGATGTCTTCAGTTCTAGCTTCAT------TATTCATCAATGAATAATGCAAGCAGATCTCCACTTGGG-TTTTTAGCCACCTTTTGAGCTGCATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            224667 105 +   1154217 AACAGTCAATCGGATGGGATGTC-TCAGTTCTAGCTTCAT------AATTCGTCAATGAATAACGCAAGCAGATCTCCACTTAGGCTCTTTAGCCACCTTTTGAGCAGCAGC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044375 106 +  15232693 AACAGTCAATCTGATGGGGTATCTTAAGTTCTAGCTTCAT------TATTCATTAATGAATAACGCAAGCAGATCTCCACTTAGGCTCTTTAGCCACCTTTTGAGCAGCAGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294028 106 +    446445 AACAGTCAATCTGATGGGATGTCTTCAGTTCTAGCTTCAT------TATTCGTCAATGAATAACGCAAGCAGATCTCCACTTAGGCTCTTTAGCCACCTTTTGAGCAGCAGC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15346734 107 -  18854210 GACAGTC-----GGTAGAATCAGTTGGGTTCCAGCTTGGTATTTAAATTCCGCCCAGGAAGAATGCAAGCAGGTCCCCACTTCAGCTCTGTGGTGACCCTTTGAATGGCATG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70395340 111 -  72498081 agaagttaatcagatggattagcttcagatttagcttcgtatttagattctataaATGAAGAATGCAAGCGGGCCTCC-CGTAAGTTCTATACTGAGCTGTTGACCAACATC
i canFam3.chr12            I 3 C 0
s dasNov3.JH569424            502655 104 +    935526 --------aaatgaaggTAATACTTCAGTCCTAGATTAATATTTAAACTCCATCGGCAAATTGTTCAAGTCAATCTCCACTTCAGTTCTCTGCCGACCTTTTGGGTAGCATC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e proCoq1.NW_012150019v1      155724 125 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=436573.000000
s hg38.chr6_KI270758v1_alt     47783 115 +     76752 TATTTGATACCCAGCAGCAGCTAAGTAGGGTGAGGTT-CTTCCTAGCAGGATTGGATCTGCACAGAGAAAGAGCAAATGGCCCCGGAGCA-TTTAGAATGAGAAAGaacatatcata
s panTro5.chr6             142751080 115 - 175400573 TATTTGATACCCAGCAGCAGCTAAGTAGGGTGAGATT-CTTCCTAGCAGGATTGGATCTGCACAGAGAAAGAGCAAATGGCCCCAGAGCA-TTTGGAATGAGAAAGAACATATCATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899308 115 - 173848474 TATTTGATACCCAGCAGCAGCTAAGTAGGGTGAGATT-CTTCCTAGCAGGATTGGATCTGCACAGAGAAAGAGCAAATGGCCCCAGAGCA-TTTGGAATGAGAAAGAACATATCATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417276 115 +   2807050 TATTTGATACCCAGCAGCAGCTAAGTAGGGTGAGGTT-CTTCCTAGCAGGATTGGATCTGCACAGAGAAAGAGCAAATGGCCCCGGAGCA-TTTAGAATGAGAAAGAACATATCATA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709842 115 - 122973662 TATTTGATACCCAGCAGCAGCTAAGTAGAGTGAGGTT-CTTCCTAGCAGGACTGGATCTGCACAGAGAAAGAGCAAATGGCCCTGGAGCA-TTTAGGATGAGAAAGAacatagcata
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138670923 115 - 171630274 TATTTGATACCCGGAAGCAGCTAAGTAGGGTGAGGTT-CTTCTTAATAGGATTGGATCTGCATAGAGAAAGAGCAAATGTCCCCAGAGCA-TTTAAGATGAGAAAGAACATATTATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            224772 115 +   1154217 TATTTGATACCCAGAAGCAGCTAAGTAGGGGGAGGTT-CTTCTTAGCAGGACTGGATCTGCACAGAGAAAGAGTCAATGTCCCCAGAGCA-TTTAGGAGGAGAAAGAAAGTATCATA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044481 115 +  15232693 TATTTGATACCCAGAAGTAGCTAAGTAGGGGGAAGTT-CTTCTTAGCAGGATTGGATCTGCACAGAGAAAGAGCAAATGGCCCCAGAGCA-TTTAGGATGAGAAAGaacatatcata
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294134 115 +    446445 TATTTGATACCCAGAAGTAGCTAAGTAGGGTGAGGTT-CTTCTTAGCAGGATTGGATCTGCACAGAGAAAGAGCAAATGGCCCCAGAGCA-TTTAGGATGAGAAAGaacatatcata
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70395451 115 -  72498081 AGTTTGATA-TTATCAGCAAGGGAGCAAGTTGAAGTTCCTTCTTGGGATGATTGGATGTG-GCAGAGCAAGTGCAAGTGGCCCTGGAGCATTTTAGGAAGAGAAAGAATATAATATA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502759 114 +    935526 TATTTGATA-CTGATAGCAACTAAGCAAAGTAGTTTT-TTTCTTAGGAGGATTGAATTT-TACAGAGAAAGTGCAAATGACTGTGGAGCATTTTAGCATAAGAAAGAACATAATATA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34356318 751 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e proCoq1.NW_012150019v1      155724 125 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15346841   0 -  18854210 C

a score=464573.000000
s hg38.chr6_KI270758v1_alt     47898 120 +     76752 catgac--ataaaatgatcaaacataataacatacataacTGTTAAACATCTCTTCAA-TTTGCAGATAACAAGGAAGAGA-----TCAGACATGTCTTAGAATTTGTTTGGAAGACCCAAAAATCTC
s panTro5.chr6             142751195 120 - 175400573 CATGAA--ATAAAATGATCAAACATAATAACATACATAACTGTTAAACATCTCTTCAA-TTTGCAGATAACAAGGAAGAGA-----TCAGACATGTCTTAGAATTTGTTTGGAAGACCCAAAAATCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899423 120 - 173848474 CATGAA--ATAAAATGATCAAACATAATAACATACATAACTGTTAAACATCTCTTCAA-TTTGCAGATAACAAGGAAGAGA-----TCAGACATGTCTTAGAATTTGTTTGGAAGACCCAAAAATCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417391 120 +   2807050 CGTGAA--ATAAAATGATCAAACATAATAACATACATAACTGTTAAACATCTCTTCAA-TTTGCAGATAACAAGGAAGAGA-----TCAGACATGTCTTAGAATTTGTTTGGAAGACCCAAAAATCTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45709957 120 - 122973662 catgac--ataaagtgatcaaacataatgacatacataACTGTTAAACATCTCTTCAA-TTTGCAGATAACAAGGAAGAGA-----TCAGACATGTCTTAGAATTTGTTTGGAAGACCCAAAAATCTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671038 118 - 171630274 CATGAC--ATAAAATGATCAAATATAATAACATACATAACTGTTAAACATCTCTTCAA-TTTGGAGAT-ACACAGAAGAGA-----TCAGACATGTCTTAGAATTTGTTTGGAAGACTC-AAAATCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            224887 118 +   1154217 CATGAC--ATAAAATGATCAAACATAATAACATACATAACTGTTAAACATCTCTTCAA-TTTGGAGAT-GCATGGAAGAGA-----TCAGACATGTCTTCGAATTTGTTTGGAAGACTC-AAAATCTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044596 118 +  15232693 catgac--ataaaatgatcaaatataataacatacataacTGTCAAACATCTCTTCAA-TTTGGAGAT-ACACGGAAGAGA-----TCAGACATGTCTTAGAATTTGTTTGGAAGACTC-AAAATCTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294249 118 +    446445 catgac--ataaaatgatcgaatataataacatacataacTGTTAAACATCTCTTCAA-TTTGGAGAT-ACACGGAAGAGA-----TCAGACATGTCTTAGAATTTGTTTGGAAGACTC-AAAATCTC
i aotNan1.NW_018508875v1   C 0 C 0
s mm10.chr17                34357069 111 +  94987271 CACGAC--ATGAAATTCTCAAACATCACAGCACACAGAATTGTCAAACACATCTTTGATTTTTCAGATATCAAAGA--------------ACATGACTTAAGATTTGATCAGAAGACTC-AAACTTTC
i mm10.chr17               I 751 C 0
s canFam3.chr12             70395566 120 -  72498081 TATGACTTATGAGATTATTAAACATCATAACAC-CTGGATTATTAAATATCCTTTCGA-TTTGCAGATAATGACAAAAAGG-----TCAAACATGACCAAAAATTTTATTAAAAGGCAC-AGATTCTC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502873 122 +    935526 CATAGCATATGAAATTATTAAGCAAAATAACATATA-AATTATTGAGCATCTCTTGAC-TTTGCAGATAATAATTAATAAAGAGGCTAACACA---CTTCAAATTTAATTGTAAGGCTC-AAAATCTC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e proCoq1.NW_012150019v1      155724 125 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15346841   0 -  18854210 C

a score=64756.000000
s hg38.chr6_KI270758v1_alt     48018 15 +     76752 TAGACAAACCAGTGT
s panTro5.chr6             142751315 15 - 175400573 TAGACAAACCAGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899543 15 - 173848474 TAGACAAACCAGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417511 15 +   2807050 TAGACAAACCAGTGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710077 15 - 122973662 TAGACAAACCAGTGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671156 15 - 171630274 TAGACAAACCACTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225005 15 +   1154217 TAGACAAACCACTGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044714 15 +  15232693 TAGGCAAACCACTGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294367 15 +    446445 TAGACAAACCACCGT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15346841 15 -  18854210 TAGAAAGGTCCCTGC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34357180 14 +  94987271 TAGGCAAGCC-TTGC
i mm10.chr17               C 0 C 0
s canFam3.chr12             70395686 15 -  72498081 TAGACAAAATGCTGT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            502995 15 +    935526 TAGACAACCTACTCC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e proCoq1.NW_012150019v1      155724 125 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=93439.000000
s hg38.chr6_KI270758v1_alt     48033 15 +     76752 CCTTAATCCAGCACA
s panTro5.chr6             142751330 15 - 175400573 CCTTAATCCAGCACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899558 15 - 173848474 CCTTAATCCAGCACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417526 15 +   2807050 CCTTAATCCAGCACA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710092 15 - 122973662 CCTTAATCCAGCACA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671171 14 - 171630274 CCTTAATCCAGCAC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225020 15 +   1154217 CCTTAATCCAGCACA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044729 15 +  15232693 TCTTAATCCAGCACA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294382 15 +    446445 CCTTAATCCAGCACA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      155849 15 +   1371726 CCTTACTCCACCACA
i proCoq1.NW_012150019v1   I 125 C 0
s otoGar3.GL873550          15346856 15 -  18854210 CCTTAATCCACCATG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34357194 15 +  94987271 CTCTAACCCACCATG
i mm10.chr17               C 0 C 0
s canFam3.chr12             70395701 15 -  72498081 CTTTAATCCATCACA
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            503010 15 +    935526 CCTTAATCCCCCACA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4485255 757 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=208551.000000
s hg38.chr6_KI270758v1_alt     48048 30 +     76752 AAATGTCCTTGTGAAAACTGCATTGTACAT
s panTro5.chr6             142751345 30 - 175400573 AAATGTCCTTGTGAAAACTGCATTGTACAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899573 30 - 173848474 AAATGTCCTTGTGAAAACTGCATTGTACAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417541 30 +   2807050 AAATGTCCTTGTGAAAACTGCATTGTACAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710107 30 - 122973662 AAATGTCCTTGTGAAAACTGCATTGTACAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671185 30 - 171630274 AAATGTCCTTGTGGAAACTGCCTTGTACAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225035 30 +   1154217 AAATGTCCTTGTGAAAACTGCCTTGTACAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044744 30 +  15232693 AAATGTCCTTTTGAAAACTGCCTTGTACAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294397 30 +    446445 AAATGTCCTTGTGAAAACTGCCTTGTACGT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4486012 30 + 123392446 AAATGTCCTTGTGAAAACTGCATTGTACAC
i micMur3.chr6             I 757 C 0
s proCoq1.NW_012150019v1      155864 30 +   1371726 AAATGTCCTTGTGAAAATTGCATTGTACAT
i proCoq1.NW_012150019v1   C 0 I 65
s otoGar3.GL873550          15346871 30 -  18854210 AAATGTCCTTGTAAAAACTGAATTGTACAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34357209 24 +  94987271 AGACACTTTTGTGAAACCTACATT------
i mm10.chr17               C 0 C 0
s canFam3.chr12             70395717 30 -  72498081 AAAAATCTTCGCAAAAACAGCATTGTACAT
i canFam3.chr12            I 1 I 4
s dasNov3.JH569424            503025 30 +    935526 AAATATCCTTGGAAGAAATAGATTGTATAT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=43503.000000
s hg38.chr6_KI270758v1_alt     48078 8 +     76752 -AGTCCCAG
s panTro5.chr6             142751375 8 - 175400573 -AGTCCCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899603 8 - 173848474 -AGTCCCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417571 8 +   2807050 -AGTCCCAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710137 8 - 122973662 -AGTCCCAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671215 8 - 171630274 -AGTCCCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225065 8 +   1154217 -AGTCCCAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044774 8 +  15232693 -AGTCCCAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294427 8 +    446445 -AGTCCCAG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4486042 8 + 123392446 -AGTGCCAG
i micMur3.chr6             C 0 I 733
s otoGar3.GL873550          15346901 8 -  18854210 -AGCCCCAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34357233 6 +  94987271 ---TGCTAT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70395751 8 -  72498081 -AGCTCCAG
i canFam3.chr12            I 4 C 0
s dasNov3.JH569424            503055 9 +    935526 AGCTCCCAG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      155894 65 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=86179.000000
s hg38.chr6_KI270758v1_alt     48086 16 +     76752 TAATTGGCCTCCTGCC
s panTro5.chr6             142751383 16 - 175400573 TAACTGGCCTCCTGCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899611 16 - 173848474 TAACTGGCCTCCTGCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417579 16 +   2807050 TAATTGGCCTCCTGCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710145 16 - 122973662 TAATTGGCCACTTGCC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671223 16 - 171630274 TAATTGGCCTCTTGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225073 16 +   1154217 TAATTGGCCTCTTGCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044782 16 +  15232693 TAATTGGCCTCTTGCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294435 16 +    446445 TAATTGGCCTCTTGCC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15346909 14 -  18854210 --ACTGGACTCTTACC
i otoGar3.GL873550         C 0 I 582
s mm10.chr17                34357239 16 +  94987271 TTACTGGACTCTTGCC
i mm10.chr17               C 0 C 0
s canFam3.chr12             70395759 16 -  72498081 TAACTGGAGTCTTGCC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            503064 16 +    935526 TAACTAGAGTCTTGCC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4486050 733 + 123392446 I
e proCoq1.NW_012150019v1      155894 65 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=-2698.000000
s hg38.chr6_KI270758v1_alt     48102 16 +     76752 AACTCCAGA-----C-------------------------------------GGGaaa
s panTro5.chr6             142751399 16 - 175400573 AACTCCAGA-----C-------------------------------------GGGaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899627 16 - 173848474 AACTCCAGA-----C-------------------------------------GGGaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417595 16 +   2807050 AACTCCAGA-----C-------------------------------------GGGGaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710161 21 - 122973662 AACCCCAGGCCCCCC-------------------------------------AGGAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671239 10 - 171630274 TACTCCAGG-----C-------------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225089 10 +   1154217 TACTCCAGG-----C-------------------------------------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044798 53 +  15232693 TACTCCAGG-----Caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294451 15 +    446445 TACTCCAGT-----C--------------------------------------aaaaa
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15347505 16 -  18854210 AATCCCAAA-----C-------------------------------------AATAAA
i otoGar3.GL873550         I 582 C 0
s canFam3.chr12             70395775 16 -  72498081 TGTTCCAGA-----C-------------------------------------CAAAAA
i canFam3.chr12            C 0 I 517
s dasNov3.JH569424            503080  7 +    935526 CTCTCCA---------------------------------------------------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34357255  0 +  94987271 C
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4486050 733 + 123392446 I
e proCoq1.NW_012150019v1      155894 65 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=-9456.000000
s hg38.chr6_KI270758v1_alt     48118 13 +     76752 aaaacaaacaaaa
s panTro5.chr6             142751415  7 - 175400573 aaaa------aca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899643  6 - 173848474 aaaa------ac-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417611  7 +   2807050 aaaa------aca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710182  4 - 122973662 AAAA---------
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378315            225099  3 +   1154217 ----------AAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044851  7 +  15232693 aaaa------aaa
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294466  7 +    446445 aaaa------aga
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15347521  8 -  18854210 AAATT-----AAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34357255  9 +  94987271 ----TTCTCTGGG
i mm10.chr17               C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4486050 733 + 123392446 I
e proCoq1.NW_012150019v1      155894 65 +   1371726 I
e calJac3.chr4             138671249  0 - 171630274 C
e canFam3.chr12             70395791 517 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            503087  0 +    935526 C

a score=165059.000000
s hg38.chr6_KI270758v1_alt     48131 59 +     76752 aaaaaacaaa-aaaaaaa----acaGTTTTTATATCTAAGAGAAGAGGAATCCTGAAAG-----GCTAA
s panTro5.chr6             142751422 59 - 175400573 aaaaaacaaacaaaaaaa----aCAGTTTT-ATATCTAAGAGAAGAGGAATCCTGAAAG-----GCTAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899649 59 - 173848474 aaaaaacaaacaaaaaaa----aCAGTTTT-ATATCTAAGAGAAGAGGAATCCTGAAAG-----GCTAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417618 59 +   2807050 aaaaaacaaacaaaaaaa----aCAGTTTT-ATATCTAAGAGAAGAGGAATCCTGAAAG-----GCTAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710186 45 - 122973662 --------------AAAA----ACAGTTTC-ATATCTAAGAGAAGAGGAATCCCGAAAG-----GCTAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671249 59 - 171630274 AAAAAAAAGAAAAAAAGC----CCAGTTTC-ATATCTAGGAGAAGAGGAATCCTGACAG-----GCTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225102 59 +   1154217 AAAAAAAAAAAAAAAAGC----CCACTTTC-ATATCTAGGAGAAGAGGAATCCTGACAG-----GCTAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044858 59 +  15232693 aaaaaaaaaaaaaaaaGC----TCAATTTC-ATATCTAGGAGAAGAGGAATCCTGACAG-----GCTAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294473 59 +    446445 ggaaaaaagaaaaaaaGC----CCAGTTTC-ATATCTAGGAGAAGAGGAATCCTGACAG-----GCTAA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15347529 54 -  18854210 AAAAGACAAACAAGAAAACCCTACAGTTTC-TTAAC---------AGCAATCCTGAAAG-----GCTAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34357264 56 +  94987271 AGGAAAGGAAAAAACCAA----TCAGCACC-GTCCCT--GGGATGAGTGACCCAGGAAG-----GTAG-
i mm10.chr17               C 0 I 1
s canFam3.chr12             70396308 60 -  72498081 -AAAAGCTGAAAAATCGA----ACAAATTT-ATTTT---AGGAAAAATGATTATGAAATCAGTCACTAA
i canFam3.chr12            I 517 I 1
s dasNov3.JH569424            503087 55 +    935526 ----AGAATGATTTAAGT----CTAGTTCC-TTGCCCAAGACAAGAGCAATCCTGAAAA-----GGTGA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4486050 733 + 123392446 I
e proCoq1.NW_012150019v1      155894 65 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=184830.000000
s hg38.chr6_KI270758v1_alt     48190 43 +     76752 AAAAAGCTAATAAATGGATTTATT-AT---CTAAACTTCAGGAAAAT
s panTro5.chr6             142751481 42 - 175400573 AAAA-GCTAATAAATGGATTTATT-AT---CTAAACTTCAGGAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899708 42 - 173848474 AAAA-GCTAATAAATGGATTTATT-AT---CTAAACTTCAGGAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417677 41 +   2807050 AAA--GCTAATAAATGGATTTATT-AT---CTAAACTTCAGGAAAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710231 42 - 122973662 AAAA-GCTAATAAATGGATTTATT-AT---CTAAACTTCAGGAAAAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671308 42 - 171630274 AAAA-GCTAATAAATTGATTTATT-AC---CTAAATTTTAGGAAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225161 41 +   1154217 AAAA-GCTAAT-AATGGATTTACT-AC---CTAAATTTTCGGAAAAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044917 41 +  15232693 AAAA-GCTAAT-AATTGATTTACT-AC---CTAAATTTTAGGAAAAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294532 42 +    446445 AAAA-GCTAATAAATTGATTTATT-AC---CTAAATTTTAGGAAAAT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      155959 42 +   1371726 AAAA-TCTAATAAATGAATTTATT-AC---CTAAATTTTAGGAAAAT
i proCoq1.NW_012150019v1   I 65 I 225
s otoGar3.GL873550          15347583 42 -  18854210 AAAA-TCTAATAAATGAATTTATT-GC---ATAAATTTTAGGAAAAT
i otoGar3.GL873550         C 0 I 4
s mm10.chr17                34357321 33 +  94987271 AGGA-CCCAGTGGCTTCGCTATTT-AC---CTAAACTC---------
i mm10.chr17               I 1 C 0
s canFam3.chr12             70396369 45 -  72498081 AATA-TAAAGTGAAATCattaatt-ataaaataaattactataaaat
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            503142 43 +    935526 AAAA-TCTAATAAATGGACTTTTTAAC---CTAGATTTTAGGGAAAG
i dasNov3.JH569424         C 0 I 2
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4486050 733 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=814282.000000
s hg38.chr6_KI270758v1_alt     48233 230 +     76752 AAAATG---TTAATA----ACAAGAATA-AGGTTTCCAATTT-AAAAAGTCAATTTACATGAGAATAAATGACTCAAGGAATAAATAATTTACTTGAGAAT-AAAAACAACCCAGGTATGCTGG-TATTAATATCTTGAAGATGAAGAAATTAGGACTTCAAATCTC----------------------------------AAAATCTTACCAAGAGTAATAGATTTG--CCACCGAATCACATAGCTGGTAGGTGACAGA--CA------------------GCAACCTCACCCAC
s panTro5.chr6             142751523 230 - 175400573 AAAATG---TTAATA----ACAAGAATA-AGGTTTCCAATTT-AAAAAGTCAATTTACATGAGAATAAATGACTCAAGGAATAAATAATTTACTTGAGAAT-AAAAACAACCCAGGCATGCTGG-TATTAGTATCTTGAAGATGAAGAAATTAGGACTTCAAATCTC----------------------------------AAAATCTTACCAAGAGTAATAGATTTG--CCACCAAATCACATAGCTGGTAGGTGACAGA--CA------------------GCAACCTCACCCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899750 230 - 173848474 AAAATG---TTAATA----ACAAGAATACGGGTTTCCAATTT--AAAAGTCAATTTACATGAGAATAAATGACTCAAGGAATAAATAATTTACTTGAGAAT-AAAaacaacccaggtatgctgg-tattaatatcttgaagatgaagaaattaggacttcaaatctc----------------------------------aaaatcttaccaagagtaatagatttg--ccaccaaatcacatagctggtaggtgacaga--ca------------------gcaacctcacccac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417718 229 +   2807050 AAAATG---TTAATA----ACAAGAATA-AGGTTTCCAATTT-AAAAAGTCAATTTACATGAGAATAAATGACTCAA-GAATAAATAATTTACTTGAGAAT-AAAaacaacccaggtatgctgg-tattaatatcttgaagatgaagaaattaggacttcaaatctc----------------------------------aaaatcttaccaagagtaatagatttg--ccaccaaatcacatagctggtaggtgacaga--ca------------------gcaacctcacccac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710273 230 - 122973662 AAAATG---TTAATC----ACAAGAATA-AGGTTTCCAATTT-AAAAAGCCAATTTACATGAGAATAAATGACTCAAGGAATAAATAATTTACTTGAGAAT-AAAaacaacccaggtatgctgg-tgttaatatcttaaagatgaagaaattaggacttcaaatctc----------------------------------aaaatcttaccaagagtaatagatttg--cccccaaatcacatagctggtaggtgacaga--ca------------------gcaacctcacccac
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671350 220 - 171630274 AAAATG---TTAATA----ACAAGAATA-AGATTTCCAATTT--AAAAGTCAATTTACATGAAGATTAATGACTCAAGTAATAAATAATTTACTTGAAAA--TAAAAAAA--CAGGTATGGTGG-TGTTAATATCTTGAAGATGAAGAAATTAAGACTGCAAATCTC----------------------------------AAAATCTTACCACGAATAATAGATTAG--CCCCCAAATCACA------GTAAGTGGCAGA--CA------------------GCACTCTCACTCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225202 227 +   1154217 AAAATG---TTAACA----GCAAGAATA-AGGTTTTCAACTT--AAAAGTCAATTTACATGAAGACAAATGACTCAAATAGTAAATAATTTACTTGAGAAT-TAAAAAAA--Caggtatggtgg-tgttagtatcttaaagatgaagaaattaagacttcaaatctc----------------------------------aaaatcttaccaataataatagatttg--cccccaaatcacatagctggtaagtgacaga--CA------------------ACAATCTCACTCAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14044958 228 +  15232693 AAAATG---TTAACA----ACAAGAAAA-AGTTTTCCAATTT--AAAAGTCAATTTACATGAAGACAAATGACTCAAGTAATAAATAATTTACTTGAGAATAAAAAAAAA--CAGGTATGGTGG-TGTTAGTATCTTAAAGATGAAGAAATTAAGACTTCAAATCTC----------------------------------AAAATCTTACCAAGAATAATAGATTTG--CCCCCAAATCACATAGCTGGTACCTGACAGA--CA------------------GCAATCTCACTCAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294574 223 +    446445 AAAATG---TTAACA----ACAAGAATA-AGATTTCCAATTT--AAAAGTCAATTTACATGAAGATAAATGACTCAAGTAATAAATAATTTACTTGAGAAT-AAAGAAAA--CATGTATGGTGG-CGTTAGTatcttaaagatgaagaaattaagacttcaaatctc----------------------------------aaaatcttaccaagaataatagatttg--cccccaaatcacatagctggtaagtgacag------------------------CAATCTCACTCAC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15347629 204 -  18854210 AAAATA---TGAATA----CTAACAATA-A--TTTCCA--TT--AAAAATCAAtttacat-----------------------attaacttatttctcaat-aaaagcaacccagagatggtgg-ttttgatgtcttaaagatgaaaacattgaaacttcaaatctc----------------------------------taaatctcactgagagtaacagatttg--ccccctaatcacacaggtgataaatgagagactca------------------gaacttgaaatcac
i otoGar3.GL873550         I 4 C 0
s mm10.chr17                34357354 257 +  94987271 AAAATGAC-TCCAAA----ATCAAGATA-AAGTCCCCA--TG-GAAACATCAACTCACAT-----------------------ATTAATTTATCTGGGAAT-GAACCCCA--GAGATGTGGTTGCTTTTGGTATCTTAAAGATGGATGGTTTAAGCCTGCAAAACTCAgggctggagaggtggctcagttaagagtacagaaaactcttccagagagcca-agttcag--ttcccagcatctactgccgatggctcacaac--cacttgtaagccagctccagggaacatgatctcc
i mm10.chr17               C 0 C 0
s canFam3.chr12             70396414 200 -  72498081 ----------ataaa----aCACGAACA-AAGTTCTCAATGTAAAAAAATCAAtttacac-----------------------attaacttctttgaaaat-aaaaacaacccagagatggtgg-ctttggtaccttaaagatgaagaaattgagattccaaatctc-----------------------------------agacctcactgaaaataatgggtttgtccccccaaatcacacagctgg----tgacagattta------------------gcactaacactcaa
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            503187 203 +    935526 AAAATGATATCAATAACTCACAATAATA-AAGTTGCCAATTTAAAAAAATCAGTTTACA------------------------ATAACCTTACCTGAGAAT-AACAAAAA-TTGGGGGTGGTGC-TTTTAGTATCTTAAAGGTGAAGAAATTGAGGTTCCAAGTTTC----------------------------------GAAGTTTCAT---------TAGATTTG-ACCCCCACATCATACGGCTGATA----ACAAATCTA------------------GCATTGTTGCTCAA
i dasNov3.JH569424         I 2 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4486050 733 + 123392446 I
e proCoq1.NW_012150019v1      156001 225 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=87833.000000
s hg38.chr6_KI270758v1_alt     48463 14 +     76752 ATTTTTGAACTGCA
s panTro5.chr6             142751753 14 - 175400573 ATTTTTGAACTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899980 14 - 173848474 attttTGAACTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417947 14 +   2807050 attttTGAACTGCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710503 14 - 122973662 atttttgaactgca
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671570 14 - 171630274 ATTTTTGAACTGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225429 13 +   1154217 A-TTTCAAACTGCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14045186 14 +  15232693 ATTTTTGAACTGCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294797 14 +    446445 ATTTTTGAACTGCA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      156226 14 +   1371726 atttttgacctgca
i proCoq1.NW_012150019v1   I 225 C 0
s otoGar3.GL873550          15347833 14 -  18854210 attttGGAACTGTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34357611 14 +  94987271 ttttctggtctgca
i mm10.chr17               C 0 I 136
s canFam3.chr12             70396614 14 -  72498081 atttttgaactgca
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            503390 14 +    935526 ATGTTTGAATTGCA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4486050 733 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=2361434.000000
s hg38.chr6_KI270758v1_alt     48477 432 +     76752 -TTTGTTTTCAGTACACAAA--ATTGACTCTGTAACAAA---CAGATGTGCAAATCATCATGCTGGATTTC----TCTAAAACATTAAACATATATCTCTCCCT-CTTCTAGTTGCCTCCA-TTTTGACAGGCTGGACACCCCAAAGCATGCATA-TGATTTTCTGATTGGCATTTCCTCGTTCCTCTTTTTCACT-TATTTTATAGAAGACTTTAGAGTCATTGGCCCTGCTCATCCTATCCT-GGCCGGGGTTGGGGAAGATGCCCTGTTAACCTGCCAGCTACTCCCCAAGAGGACCACAATGCACGTGGAGGTGAGGTGGTACCGCTCAGAGCCCAGCACACCTGTGTTTGTGCACAGGGATGGAGTGGAGGTGACTGAGATGCAGATGGAGGAGTACAGAGGCTGGGTAGAGTGGATAGAGAATGGCATTGCAAAGGGAAAT
s panTro5.chr6             142751767 432 - 175400573 -TTTGTTTTCAGTACACAAA--ATTGACTCTGTAACAAA---CAGATGTGCAAATCATCATGCTGGATTTC----TCTAAAACATTAAACATATATCTCTCCCT-CTTCTAGTTGCCTCCA-TTTTGACAGGCTGGACACCCCAAAGTATGCATA-TGATTTTCTGATTGGCATTTCCTCGTTCCTCTTTTTCACT-TATTTTATAGAAGACTTTAGAGTCATTGGCCCTGCTCATCCTATCCT-GGCCAGGGTTGGGGAAGATGCCCTGTTAACCTGCCAGCTACTCCCCAAGAGGACCACAATGCACATGGAGGTGAGGTGGTACTGCTCAGAGCCCAGCACCCCTGTGTTTGTGCACAGGGCTGGAGTGGAGGTGACTGAGATGCAGATGGAGGAGTACAGAGGCCAAGTAGAGTGGATAGAGAATGGCATTGCAAAGGGAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140899994 432 - 173848474 -TTTGTTTTCAGTACACAAA--ATTGACTCTGTAACAAA---CAGATGTGCAAATCATCATGCTGGATTTC----TCTAAAACATTAAACATATATCTCTCCCT-CTTCTAGTTGCCTCCA-TTTTGACAGGCTGGACACCCCAAAGTATGCATA-TGATTTTCTGATTGGCATTTCCTCGTTCCTCTTTTTCACT-TATTTTATAGAAGACTTTAGAGTCATTGGCCCTGCTCATCCTATCCT-GGCCAGGGTTGGGGAAGATGCCCTGTTAACCTGCCAGCTACTCCCCAAGAGGACCACAATGCACATGGAGGTGAGGTGGTACCGCTCAGAGCCCAGCACACCTGTGTTTGTGCACAGGGATGGAGTGGAGGTGACTGAGATGCAGATGGAGGAGTACAGAGGCCAAGTAGAGTGGATAGAGAATGGCATTGCAAAGGGAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2417961 432 +   2807050 -TTTGTTTTCAGTACACAAA--ATTGACTCTGTAACAAA---CAGATGTGCAAATCACCATGCTGGATTTC----TCTAAAACATTAAACATATATCTCTCCCT-CTTCTAGTTGCCTCCA-TTTTGACAGGCTGGACACCCCAAAGCATGCATA-TGATTTTCTGATTGGCATTTCCTCGTTCCTCTTTTTCACT-TATTTTATAGAAGACTTTAGAGTCATTGGCCCTGCTCATCCTATCCT-GGCCAGGGTTGGGGAAGATGCCCTGTTAACCTGCCAGCTACTCCCCAAGAGGACCACAATGCACATGGAGGTGAGGTGGTACTGCTCAGAGCCCAGCACACCTGTGTTTGTGCACAGGGATGGAGTGGAGGTGACTGAGATGCAGATAGAGGAGTACAGAGGCCGGGTAGAGTGGATAGAGAACGGCATTGCAAAGGGAAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710517 425 - 122973662 -tttgttttcagtacacaaa--attgactcTGTAACAAA---CAGATGTGCAAATCATCATGCTGGATTTC----TCTA-------AAACATATATCTCTCCCT-CTTCTAGTTGCCTCCA-TTTTGACAGGCTGGACACCCCAAAGCACGCATA-TGATTTTCTGATTGGCATTTCCTCATTCCTCCTTTTCACT-TATTTTATAGAAGACTTTAGAGTCATTGGCCCTGCTCACCCTATCCT-GGCCAGGGTTGGGGAAGATGCCCTCTTAACCTGCCAGCTACTCCCCAAGAGGACCGCAATGCACATGGAGGTGAGGTGGTACCGCTCAGAGCCCAGCACACCTGTGTTTGCGCACAGGGATGGAGTGGAGGTGACTGAGATGCAGATGGAGGAGTACAGAGGCCGGGTAGAGTGGATAGAGAATGGCATTGCAAAGGGAAAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138671584 432 - 171630274 -TTTATTTTCAGTACACACA--A-TGACTGTGTAACAAG---CAAATGTGCAAATCATCACGCCAGATTTC----TCTAAAACATGAAACAGACATCCCACCCT-CTTCTAGTTGCCTCCA-TTTTGATAGACTGGACACCCCAAAGCATGCATATTGATTTTCTGATTGTCGTTTCCTCGT-CCTCTTTTTCACT-CATTTTGTAGATGACCTTCGGGTCATTGGTCCTGCTCATCCTATCCTGGGCCAGGGTTGGGGAAGATGTCCTGCTAACCTGCCAGCTACTCCCCAAGAGGACCGCAATGCACATGGAGGTGAGGTGGTACCGCTCGGAGCCCAGCACACCTGTGTTCACGCACAGGGTTGGAGTGGAGGTTACTGAGATGCAGATGGAGGAGTACAAAGGCCGGGTAGAGTTGATAGAGGATGGCATTGCAAAGGGAAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225442 339 +   1154217 -TTTATTTTCAGTACACAAA--A-TGGCTGT-----------------------------------------------------------------------------------------------------CTGGACACCCAAAAGCATGCATATTGATTTTCTGATTGGCATTTCCTCGT-CCTCTTTTTCACT-CATTTTGTAGATGACTTTAGAGTCATTGGTCCTGCTCATCCTATCCT-GGCCAGGGTTGGGGAAGATGTCCTGCTAACCTGCCAGCTGCTCCCCAAGAGGACCGCAATGCACATGGAGGTGAGGTGGTACCGCTCAGAGCCCAGCACACCTGTGTTCATGTACAGGGATGGAGTGGAGGTTACTGAGATGCAGATGGAGGAGTACAAAGGCCGGGTAGAGTGGATAGAGGACGGCATTGCAGAGGGAAGC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14045200 432 +  15232693 -TTTATTTTCAGTACACAAA--A-TGACTGTGTAACAAA---CAAATGTGCAATTCTTCATGCCAGATTTC----TCCAAAACATGAAACATACATCCCACCCT-CTTCTAATTGCCTCCA-TTTTGTTAGACTGGACACCCCAAAGCATGCACATTGATTTTCTGATTGGCATTTCCTCATCCCTCTTTTTCACT-CATTTTGTAGATGACTTTAGAGTCATTGGTCCTGCTCATCCTATCCT-GGCCAGGGTTGGGGAAGATGTCCTGCTAACCTGCCAGCTGCTCCCCAAGAGGACCGCAATGCACATGGAGGTGAGGTGGTACCGCTCAGAGCCCAGCACGCCTGTGTTCACGCACAGGGATGGAGTGGAGGTTACTGAGATGCAGATGGAGGAGTACAAAGGCCGGGTAGAGTGGATAGAGGATGGCATTGCAGAGGGAAGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      294811 431 +    446445 -TTTATTTTCAGTACACAAA--A-TGACTGTGTAATAAA---CAAATGTGCAAATCATCACGCCGGATTGC----TCTAAAACATGAAACAGACATCCCACCCT-CTTCTAGTTGCCTCCA-TTTTGATAGACTGGACACCCCAAAGCATGCATAGTGATTTTCTGATTGTCATTTCCTTGT-CCTCTTTTTCACT-CATTTTGTAGATGACCTTAGGGTCATTGGTCCTGCTCATCCTATCCT-GGTCAGGGTTGGGGAAGATGTCCTGCTAACCTGCCAGCTACTGCCCAAGAGGACCGCAATGCACATGGAGGTGAGGTGGTACCGCTCAGAGCCCAGCACACCTGTGTTCATGCACAGGGATGGAGTGGAGGTTACTGAGATGCAGATGGAGGAGTACAAAGGCCGGGTAGAATTGATAGAGAATGGCATTGCAAACGGAAGC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      156240 433 +   1371726 -tttcttttcagtacacgaa--attgtctctGTAACAAA---CAAATATGCAAATCGCCAGGCTGGATTTC----TCTAAGACGTTGAAAATGAAGCCCTCCCT-CCTCTCGGTGCCTCCC-TTTTGATGGGC-TGACACCCCAAAGCGAGCGCGTCGATTCTCTGCGTGGCGTTGTCTGGTTCCTCTCTTTCTCTCTGTTTTGTAGATGACTTTAGGGTGGTTGGTCCTGCCCGTCCTGTCCT-GGCCAGGCTAGGGGAGGACGCCCTGCTCACCTGTCAGGTCCTGCCCAGGAGGACGGCCACGCACATGGAAGTGCGGTGGTACCGCGCGGAGCCCGGCGCGCCGGTGTTTGCGCACCGGGACGGGGCCGCGGTGCCCGAGATGCAGGCGGAGGAGTACAGGGGCCGGGTGGAGTGGACAGAGGACGACGTTGCTGAGGGACGT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15347847 425 -  18854210 -CTTATTGTCAGTGTACAAA--ATCGTCTCTGTAACAAAGATGATGTGTGCAAATCATCATGCT-GATGTC----TCTAGGACATTGAAAAGGAAGCCC------CCCACCGCTGCCTCCG-TTTTGATTGGCTTGACACCCCAAAGCAAGCATATGGATCCTCTGCTTGTTGTT------TTCCTCTCTCTCACTCTGTTTTGCAGATGACTTTAGGGTGCTTGGCCCTGGTGGACCTATCCT-GGCCAGAGTCGGGAAAGATGTCCTGCTAACCTGTCACATCCTCCCCAAGAGGACGGCGATGCACATGGAAGTGCGGTGGTACCGCTCCGAGCCCGACACGCCTGTGTGTGTCCTCCGGGAGGGGGCAGAGGTGACCGAGGTGCAGATGGAGGAGTACAGAGGCCGGGTAGAGTGGATGGAGGACGGCGTTGCTGAGGGACAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34357761 429 +  94987271 -TTAAATTTTAGAACACATACCATTTATTTT-TAACCAG---AAAATGTGCACCCTTCCATGTTTTAATTC----TCTGAAACATTGACATTAAATACTTTCCTGCTTTCTGTTAA--CAA-GTTCCAGCACCTTGGCTACTTGAAGCGAGCATCCTGGTTCTCTGGCTTGCCTCTCTGTTT---CCTCTTTCACT--GTTTTGTAGATGACTTCAGAGTGGTCGGTCCTAACCTCCCAATCTT-GGCTAAAGTCGGGGAAGATGCCCTGCTAACGTGTCAGCTCCTCCCCAAGAGGACCACGGCACACATGGAGGTGAGGTGGTACCGCTCCGACCCTGACATGCCAGTGATTATGTACCGGGATGGAGCTGAGGTGACTGGGCTACCGATGGAGGGGTACGGAGGCCGGGCAGAGTGGATGGAGGACAGCACTGAAGAGGGCAGT
i mm10.chr17               I 136 C 0
s canFam3.chr12             70396629 434 -  72498081 -gctattttcagcacacgaa--attgtctttttAACAGC---CAAATGTGCAAAGCATTGTGCTAGATTTC----TCTAAATCACTGAAAATAAAGCCCTCCCT-CCTCCAGATGCCTCCA-TTTTGATAGATTGGACATCCCAAAGCAAGCATATTAATCTTCCAATTGGCATTTTCTGGTACCTCTTTTTCACTCTGTTTTGTAGAAAACTGGAGAGTGATTGGTCCTACACATCCTATCCT-GGCCAGGATTGGGGAAGATGCCCTACTAACCTGTCAGCTCCTCCCCAAGAGGACCGCAATGCACATGAAGGTGACCTGGTACCGCTCAGAGCCCAGCACACCTGTGTTTGCACACTGGGATGGAGCTGATGTGACCGAGATGCAGATGGAGGAGTACAGAGGCCGGGTAGAGGTGATAAAGGATGGCATTCTTGAGGGAAAA
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            503404 436 +    935526 TGCTATTTCCCGTACACAAA--ATTGTCT-TATAAAAAC---AAAATGTGCAAACTGTCATGCTGGATATCTATTTTTTAAAAATTGAAAATAAAGCCCTCACT-TCTCCAGGTGCCTCCACTTTTGATAGGTTGGACATCCCAGAGCAAGCATACGAAGCTTCCAATTGGCCTTTTCT-GTTCCTCTTTTTCACT--GTTTCCTAGATGACTTTAAAGTGATAAGTCCTGCCCATCCTATCCT-GGCCAGGGTCGGGGAAGATGCCCTACTAACCTGTCAGCTGCTCCCCCAGAGGAGTGCGCAGCACATGGAGGTGAGCTGGTACCGCTCGGAGCCCGGCATACCTGTGCTCGCACGCTGGGATGGGGCTGAGGTGGCCGCGCTGCAGATGGAGGAGTACAGGGGCCGTGTAGAATGGATAGAGGACGACATTGCCAAGGGAAGC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4486050 733 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=858304.000000
s hg38.chr6_KI270758v1_alt     48909 113 +     76752 GTGGCACTGAAGATACACAACATCCAGCCCTCCGACAATGGACAATACTGGTGCCATTTCCAGGATGGGAACTACTGTGGAGAAACAAGCTTGCTGCTCAAAGTAGCAGGTGA
s panTro5.chr6             142752199 113 - 175400573 GTGGCACTGAAGATACACAACATCCAGCCCTCCGACAATGGACAATACTGGTGCCATTTCCAGGATGGGAACTACTGTGGAGAAACAAGCTTGCTGCTCAAAGTAGCAGGTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140900426 113 - 173848474 GTGGCACTGAAGATACACAACATCCAGCCCTCCGACAATGGACAATACTGGTGCCATTTCCAGGATGGGAACTACTGTGGAGAAACAAGCTTGCTGCTCAAAGTAGCAGGTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2418393 113 +   2807050 GTGGCACTGAAGATACACAACATCCAGCCCTCTGACAATGGACAATACTGGTGCCATTTCCAGGATGGGAACTACTGTGGAGAAACAAGCTTGCTGCTCAAAGTAGCAGGTGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45710942 113 - 122973662 GTGGCACTGAAGATACACAACATCCAGCCCTCTGACAACGGACAATACTGGTGCCATTTCCAGGATGGGAACTACTGTGGAGAAACAAGCTTGCTGCTCAAAGTAGCAGGTGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138672016 113 - 171630274 GTGGCACTGAAGATATACAACATCCAGCCCTCCGACAATGGACAATACTGGTGTCATTTCCAGGATGGGGACTATTGTGGAGAAACAAGCTTGCTGCTCAAAGTAGCAGGTGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225781 113 +   1154217 GTGGCCCTGAAGATATACAACATCCAGCCCTCCGACAATGGACAATACTGGTGTCATTTCCAGGATGGGAACTCTTGTGGAGAAACAAATTTGCTGCTCAAAGTAGCAGGTGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14045632 113 +  15232693 GTGGCGCTGAAGATATACAACATCCAGCCCTACGACAATGGACAATACTGGTGTCATTTCCAGGATGGGAACTATTGTGGAGAAACAAGCTTGCTGCTCAAAGTAGCAGGTGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      295242 113 +    446445 GTGGCACTGAAGATATACAACATCCAGCCCTCCGACAACGGACAATACTGGTGTCATTTCCAGGACGGGAACTATTGTGGAGAAACAAGCTTGCTGCTTGAAGTAGCAGGTGA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4486783 113 + 123392446 GTGGCCCTGAAGATACACAACATCCAGCCATCTGACCACGGTCGATACTGGTGCCGTTTCCAGGAGGGACACTATTGCGCAGAAACAAGCTTGCTGCTCTCAGTAGCAGGTGA
i micMur3.chr6             I 733 I 76
s proCoq1.NW_012150019v1      156673 113 +   1371726 GTGGCCCTGAAGATACGCAACATCCAACCATCTGACGATGGACAATACTGGTGCCACTTCCAGGAGGGAAACTGTGGTGGAGAAACAAGCTTGCTCCTCAAAGTGGCAGGTGA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15348272 113 -  18854210 ATGACTCTGAAGATACGCAACGTCCAGCCGTCTGACAGTGGGCAATACTGGTGCCGTTTCCAGGAGGGAGACTTCTATGCAGAAGCAAGCTTGCTGCTGGAGGTAGCAGGTGA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34358190 113 +  94987271 GTGGCTCTGAAGATTCGCCAGGTCCAGCCAAGTGACGATGGCCAGTACTGGTGCCGCTTCCAGGAGGGGGACTACTGGAGAGAGACAAGCGTGCTACTCCAAGTGGCTGGTGA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70397063 113 -  72498081 GTGACTCTGAAGATAAACAATATCCAGCCATCCGATAATGGGGAATACTGGTGCTGTATCCAAGAGAATAACTATTGTCAAGAAACAAGCTTGCAGCTTAAAGTTACAGGTGA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            503840 110 +    935526 GTGGCTCTGCGGATTTACAACATCCAGCCGTCCGACAATGGGCAATACTGGTGCAGATACCAGGA---GAGCTATTATGGAGAAACAAGCTTGCAGCTCAAAGTAGCAGGTAA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=225281.000000
s hg38.chr6_KI270758v1_alt     49022 42 +     76752 ATATCTGGGGAAAGACACAGGGTCTCAAGAGG-CAGAGATATA
s panTro5.chr6             142752312 42 - 175400573 ATATCTGGGGAAAGACACAGGGTCTCAAGAGG-CAGAGATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140900539 42 - 173848474 ATATCTGGGGAAAGACACAGGGTCTCAAGAGG-CAGAGATATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2418506 42 +   2807050 ATATCTGGGGAAAGACACAGGGTCTCAAGAGG-CAGAGATATA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45711055 40 - 122973662 ATATC--GGGAAAGACACAGGGTCTCAAGAGG-CAGAGATATA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138672129 42 - 171630274 ATATCTGGGGAAAGACACAGGGTCTCAGGAGG-CAGAAGTGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225894 42 +   1154217 ATATCTGGGGGAAGACACAGGGTCTCAGGAGG-CAGAAGTATA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14045745 42 +  15232693 ATATCTGGGGAAAGACACAGGGTCTCAGGAGG-CAGAAGTATA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      295355 42 +    446445 ATATCTGGGGAAAGACACAGGGTCTCAAGAGG-CAGAAGTATA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      156786 41 +   1371726 CTATCTGGGAAAAGACACAGGGTCTCGGAGGG--AGAATTATG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15348385 41 -  18854210 CTATCTGGGAAAAGACACAGGGTATCAGGGGG--AGAATTATA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34358303 43 +  94987271 ATATCTGCCcaggggcccaggggcacagaggaacaggggcaca
i mm10.chr17               C 0 I 1719
s canFam3.chr12             70397176 41 -  72498081 ATATCTTGGAAAAGACATAGAGTCTTGGAGGG--AGAAGTATA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            503950 41 +    935526 ATTTCCAGGAAAAGATACAGGACTTTGGAGGG--AGAAGTGTA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4486896 76 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=136885.000000
s hg38.chr6_KI270758v1_alt     49064 35 +     76752 TTAATTTGTGGTAAGCTTT-----GTG---------------ACAGTTGAGGAAA
s panTro5.chr6             142752354 35 - 175400573 TTAATTTGTGGTAAGCTTT-----GTG---------------ACAGTTGAGGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140900581 35 - 173848474 TTAATTTGTGGTAAGCTTT-----GTG---------------ACAGTTGAGGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2418548 35 +   2807050 TTAATTTGTGGTAAGCTTT-----GTG---------------ACAGTTGAGGAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45711095 35 - 122973662 TTAATTTGTGGTAAGCTTT-----TTG---------------GCAGTTGAGGAAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138672171 32 - 171630274 T---TTTGTGGTAAGCTTT-----TTG---------------TCAGTTGAGGAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225936 32 +   1154217 T---TTTGTAGTAAGCTTT-----CTG---------------TCAGTTGAGGAAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14045787 32 +  15232693 T---TTGGTGGTAAGCTTT-----TTG---------------TCAGTTGAGGAAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      295397 32 +    446445 T---TTCGTGGTAAGCTTT-----TTG---------------TCAGTTGAGGAAT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      156827 35 +   1371726 CTAATTTGCAGTAAGCTGA-----TTG---------------TCAGTTGGAGAAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15348426 40 -  18854210 CTAATTGGTGGGAAGCTGACAGTCTTG---------------TCAGTTGAAGAAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70397217 50 -  72498081 TTAATTTATGGTAAGCTTA-----TGGCAATGAACTGAAAAATAAGTTGAAAAAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            503991 35 +    935526 TTAACTTGTGGTAAGCTTA-----TTG---------------CTGGTAGAAGAAT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34358346 1719 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4486896 76 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=515491.000000
s hg38.chr6_KI270758v1_alt     49099 83 +     76752 TCCTTTTGAATCATCAAGGTAATTCCTAATGCTTAGTCCTCTACCCTGATTGATTTAAAAATAAGTGGTTCTGGAGTCTT-----CAA
s panTro5.chr6             142752389 83 - 175400573 TCCTTTTGAATCATCAAGGTAATTCCTAATGCTTAGTTCTCTACCCTGATTGATTTAAAAATAAGTGGTTCTGGAGTCTT-----CAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140900616 83 - 173848474 TCCTTTTGAATCATCAAGGTAATTCCTAATGCTTAGTTCTCTACCCTGATTGATTTAAAAATAAGTGGTTCTGGAGTCTT-----CAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2418583 83 +   2807050 TCCTTTTGAATCATCAAGGTAATTCCTAATGCTTAGTCCTCTACCCTGATTGATTTAAAAATAAGTGGTTCTGGAGTCTT-----CAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45711130 88 - 122973662 TCCTTTTGAATCATCAAGGTAATTCCTAATGCTTAGTCCTCTACCCTGATTTACTTAAAAATAAGTGGTTCTGGAGTCTTCAAAGCAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138672203 88 - 171630274 TCCCTTTGAATCACCCAGGTAATTCCTAATGCTTAGTCCTCTGCCCTGATTGATTTAAAAATAAGTGGTTCTTGAGTCTTCAAAGCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            225968 88 +   1154217 TCCCTTTGAATCACCAAGGTAATTCCTAATGCTTAGTCCTCTGCCCTGATTGATTTTAAAATAAGTGGTTCTTGAGTCTTCAAAGCAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14045819 88 +  15232693 TCCCTTTGAATCACCAAGCTAATTCCTAATGCTTAGTCCTCTGCACTGATTGATTTTAAAATAAGTGGTTCTTGAGTCTTCAAAGCAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      295429 88 +    446445 TCCCTTTGAATCACCAAGGTAATTCCTAATGCTTAGCCCTCTGCCCTGATTGACTTAAAAATAAGTGGTTCCTGAGCCTTCAAAGCAA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4486972 83 + 123392446 TCCCTTTGAATCATCAAGGCAATTCCTAATGCCCAGTCCTCTGCCCTGGTTCACTTGAAAGCAAGTGGGTTTGGAGTTTT-----CAA
i micMur3.chr6             I 76 I 1600
s proCoq1.NW_012150019v1      156862 83 +   1371726 TCCCTTTGAATCATCAAGGCAATTCCGAATGCCCAATCCTCTACCCTGATTCACTTCAAAGCAAGTGGTTCTGGAGTTTT-----CAA
i proCoq1.NW_012150019v1   C 0 I 602
s otoGar3.GL873550          15348466 83 -  18854210 TCCCTTTGAGTTAGCAGGGTAATTCCTAATGCCCAGTTCTCTGCCTTGATTCACTTGAAAACAAGTGGTTATGGAGTCTT-----CAA
i otoGar3.GL873550         C 0 I 5
s canFam3.chr12             70397267 83 -  72498081 TCCCTTTCAATCCTCCAGGTAATTCCTAATGACCAGTCCTCTGTCCTGATTCCTTTGAAGGCAAGTGATTCTGAAGTCTT-----CAA
i canFam3.chr12            C 0 I 5
s dasNov3.JH569424            504026 75 +    935526 TCC--------CATCAAGGCAACTCCTAATGCTCGGTCCTCTAACCAGATTCATTTGAAGTCAAATGGTTCTTCAATTTT-----CAA
i dasNov3.JH569424         C 0 I 5
e mm10.chr17                34358346 1719 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=141277.000000
s hg38.chr6_KI270758v1_alt     49182 31 +     76752 GCTTAGTGTTAAAATATTttcccaaatttaa
s panTro5.chr6             142752472 31 - 175400573 GCTTAGTGTTAAAATATTttcccaaatttaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140900699 31 - 173848474 GCTTAGTGTTAAAATATTttcccaaatttaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2418666 31 +   2807050 GCTTAGTGTTAAAATATTttcccaaatttaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45711218 31 - 122973662 GCTTAGTGTTAAAATATTttcccaaatttaa
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138672291 31 - 171630274 GCTTAGTGTTAAAATATTTTCCAAAatttaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            226056 31 +   1154217 GCTTAGTGTTAAATTATTttcccaaatttaa
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14045907 31 +  15232693 GCTTAGTGTTAAAATATTTTCCAAAatttaa
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      295517 31 +    446445 GGTTAGTGTTAAAATATTTTCCAAAatttaa
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15348554 31 -  18854210 CCTCACTGGTAAAATATTTTCCTAAGTTTAA
i otoGar3.GL873550         I 5 I 145
s canFam3.chr12             70397355 31 -  72498081 GCTCACTTATAAACAATCttctcgaatttaa
i canFam3.chr12            I 5 C 0
s dasNov3.JH569424            504106 31 +    935526 ACTTGCTTGTAAAATATTTTGCcagatttaa
i dasNov3.JH569424         I 5 C 0
e mm10.chr17                34358346 1719 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4487055 1600 + 123392446 I
e proCoq1.NW_012150019v1      156945 602 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=38621.000000
s hg38.chr6_KI270758v1_alt     49213 8 +     76752 tttgcaca
s panTro5.chr6             142752503 8 - 175400573 tttgcaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140900730 8 - 173848474 tttgcaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2418697 8 +   2807050 tttgcaca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45711249 8 - 122973662 tttgcaca
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138672322 8 - 171630274 tttgcaca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            226087 8 +   1154217 tttgcaca
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14045938 8 +  15232693 tttgcaca
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      295548 8 +    446445 tttgcacg
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15348730 8 -  18854210 tttacaca
i otoGar3.GL873550         I 145 I 102
s canFam3.chr12             70397386 8 -  72498081 cttacaca
i canFam3.chr12            C 0 I 9
s dasNov3.JH569424            504137 8 +    935526 cctacatg
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34358346 1719 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4487055 1600 + 123392446 I
e proCoq1.NW_012150019v1      156945 602 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1254680.000000
s hg38.chr6_KI270758v1_alt     49221 308 +     76752 gttttgactgttcttgaggattatttggaatccatgacatgcagtctttagca--a-ttttgctgagacacacatttgtgctacctaaggctggtgcgcaagagcaaaccaat------tgctgcatgaatgagcccagctgac-gt-ccggcatctgtatctcag-ggcattggtttttctctacccaatcccatctatgcagaaactgag-----acgtgaaaatgttctttccttgtgaaatgccctcagttagaaagctaTCAACAAGACTGAAAAGGCTAAGAATGTCGTGCTTT---GGAGATTGTTATATACTAG-----TGTTCA
s panTro5.chr6             142752511 308 - 175400573 gttttgactgttcttgaggattatttggaatccatgacatgcagtctttagca--a-ttttgctgagacacacatttgtgctacctaaggctggtgcgcaagagcaaaccaat------tgctgcgtgaatgagcccagctgac-gt-ctggcatctgtatctcag-ggcattggtttttctctacccaatcccatctatgcagaaactgag-----acgtgaaaatgttctttccttgtgaaatgccctcagttagaaagctaTCAACAAGACTGAAAAGGCTAAGAATGTCGTGCTTT---GGAGATTGTTATATACTAG-----TGTTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140900738 308 - 173848474 gttttgactgttcttgaggattatttggaatccatgacatgcagtctttagca--a-ttttgctgagacacacatttgtgctacctaaggctggtgcgcaagagcaaaccaat------tgctgcgtgaatgagcccagctgac-gt-ctggcatctgtatctcag-ggcattggtttttctctacccaatcccatctatgcagaaactgag-----acgtgaaaatgttctttccttgtgaaatgccctcagttagaaagctaTCAACAAGACTGAAAAGGCTAAGAATGTCGTGCTTT---GGAGATTGTTATATACTAG-----TGTTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2418705 308 +   2807050 gttttgactgttcttgaggattatttggaatccatgacatgcagtctttagca--a-ttttgctgagatacacatttgtgctacctaaggctggtgcgcaagagcaaaccaat------tgctgcgtgaatgagcccagctgac-gt-ccggcatctgtatctcag-ggcattggtttttctctacccaatcccatctatgcagaaactgag-----acgtgaaaatgttctttcgttgtgaaatgccctcagttagaaagctaTCAACAAGACTGAAAAGGCTAAGAATGTCGTGCTTT---GGAGATTGTTATATACTAG-----TGTTCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45711257 309 - 122973662 gttttgactgttcttgaggattatttgaaatccatgacatgcagtctttagca--a-ttttgctgaaacacacatttgtgctacctaaggctggtgcgcaagagcaaaccaat------tgccgcatgagtgaacccagctgac-gtccctgcatctgtatcacag-ggcattggttgttctctacccaatcccatctatgcagaaactgag-----atgtgaagatgttctttccttgtgaaatgccctcagttagaaagctagcAACGAGACTGAAGAGGCTAAAAATGTTGTGCTTT---GGAGATTGTCATATACTAG-----TGTTCA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138672330 309 - 171630274 gttttgactgttcttgaggattattagaaatccatgacatacagtcattagca--a-ttttgccgagacacacgttagtgctgcctaaggctggtgtgcaagagcaagccaat------tgctgcatgagtgagcccagctgactgc-cccacatctgtatctcag-ggcatcggttgttctctacccaaccccgcctatgcagaaactgag-----atgtgaaaaggttctttcttggtgaaatgccctcagttagaaagctaGTAATGAGACTGAAGAGGCCAAGAATGTTGTGCTTT---GGAGATTGTCATACACTAA-----TGTTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            226095 309 +   1154217 gttttgactgttcttgaggatgatttgaaatccatgacatgcagtcattagca--a-ttttgctgagacacacatttgtgctgcctgaggctgctgtgcaagagcaagccaat------tgctgcgtgagtgagcccagctgaatgc-cccacatctgtatctcag-ggcctcaggtgttctctacccaaccccgcctatgaagaaactgag-----atgtgaaaaggttctttcttggtgacatgccctcagttagaaagctagcAATGAGACTGAAGAGGCCAAGAACATTGTGCTTT---GGAGATTGCCATGTACTAA-----TGTTCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14045946 307 +  15232693 gttttgactgttcttgaggattattggaaatccatgacatgcagtcattagca--a-ttttgctgagacacacttttgtgctgcctcaggctggtgtgcaagagcaagccaat------tgctgcatgagtgag-ccagctgactgc-cccacatctgtatctcag-ggcatcggttgttctctacccaaccccgcctatgcagaaactg-g-----gtgtgaaaaggttctttcttggtgaaatgccctcagttagaaagctagcAATGAGACTGAAGAGGCCAAGAATGTTGTGCTTT---GGAGATTGCCACGTACTAA-----TGTTCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      295556 311 +    446445 gttttgactgttctcgaggattatttgaaatccatgacatgcagtcattagcaata-ttttgctgagacacacatttgtgctgcctaaggctggtgtgcaagagcaagccaat------tgctgcctgagttggcccagctgactgc-cccacatttgtatctcag-ggcatcggttgttctctacccaaccccgcctatgcagaaactgag-----atgtgaaaaggttctttcttggtgaaatgccctcagttagaaagctagcAATGAGACTGAAGAGGTCAAGAATGTTGTGCTTT---GGAGATTCTCATATACTAA-----TGTTCA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15348840 316 -  18854210 gttttgactattcctgaagattatctgaaatctatggcatgcgggctttagca--a-tttggctgaggcacaagtttgtgccacccaaggctggtgtgcaagagtgagttgattgtgactgctgggtgagcaagcccagctccctgc-tcagcttctatagctcag-ggaaatggctgttttctgctcgacctcatctatgtagtaaccaag-----atgtaaaaactttgtttctctgtgaaaTTCTCCCAGTTAAGAAGCTAGCAATGAGACCG-AGAGGTTAAGAACATTGTGCTTTTAGGGAGAGTATCACACACTAG------GTTCA
i otoGar3.GL873550         I 102 C 0
s canFam3.chr12             70397403 285 -  72498081 attctgactattcttgaccactaattgcaatccatgacatctggtcattagca--a-ttttactgaggcacaaatttgtgctgtatcaggctggtgtgttagggcaggtcaat------catagagtgagtgagtctagctaactgc-ccagcaaccatatctcaatggaatgcattgttatctacccaccctccaatatgcagtaactaa------atgggaaaattgtctttctttgtggaatgctcccggttagaaagctaatgctggGAACAAAGAGGTTAAGAACTTTATGTTTT---T-----------------------------
i canFam3.chr12            I 9 C 0
s dasNov3.JH569424            504145 304 +    935526 gtgtttaccaatcttaaggattacttgaaacgcatgacaggtcatcattagaa--atttttgctgaatcacgaatttgtgccaca-aaggctggtggaaaagagcaagtcgag------agc----ttagtgagcctagcttactac-ccgacatctgtatctcaa-cgta-------------attcaacctcatttatgcaatagctgagatgcaatgtgaaaatcttacttctttgtacgacgcctccagttagaaagctagtgccaggactgAAGAGCTTCAGAACATTGTGCTTTTATGGAG-TTGCCATGTATTAAAATCATGTCCA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34358346 1719 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4487055 1600 + 123392446 I
e proCoq1.NW_012150019v1      156945 602 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=636304.000000
s hg38.chr6_KI270758v1_alt     49529 137 +     76752 ATGAATTGGGGACTCACAGATGCTTTTGGACACACCCTCTGTGAATGGGAAGGTTCTTCATATTGCTGTTGTATTAGCTAAGCAGGAAGGAGTAGGGAAGAAGGGGACAACTGAAGAATGGATCTGTCTTATGAAAA-
s panTro5.chr6             142752819 137 - 175400573 ATGAATTGGGGACTCACAGATGCTTTTGGACACACCCTCTGTGAATGGGAAGGTTCTTCATATTGCTGTTGTATTAGCTAAGCAGGAAGGAATAGGGAAGAAGGGGACAACTGAAGAATGGGTCTGTCTTATGAAAA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140901046 137 - 173848474 ATGAATTGGGGACTCACAGATGCTTTTGGACACACCCTCTGTGAATGGGAAGGTTCTTCATATTGCTGTTGTATTAGCTAAGCAGGAAGGAATAGGGAAGAAGGGGACAACTGAAGAATGGATCTGTCTTATGAAAA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2419013 137 +   2807050 ATGAATTGGGGACTCACAGATGCTTTTGGACACACCCTCTGTGAATGGGAAGGTTCTTCATATTGCTGTTGTATTAGCTAAGCAGGAAGGAGTAGGGAAGAAGGGGACAACTGAAGAATGGATCTGTCTTATGAAAA-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45711566 137 - 122973662 ATGAATTGGGGACTCACAGATGCTTTTGGACACACCCACTGTGAATGGGAAGGTTCTTCAGATTGCTGTTGTATTAGCTAAGCAGGAAGGGGTAGGGAGGAAGGGGACAACTGAAGAATGGGTCTGTCTTATGAGAA-
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138672639 137 - 171630274 ATGAATTGGGGCCTCACAGATGCTTTTGGACACACCCACTATGAATGGGAAGGTTCTTCAGATTGCTGTTGTATTAGCTAAGCAGGAAGGGGTGGGGAGGAAGGGGACAACTGAAGAATGGATCTGTCTTATGAAAT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            226404 137 +   1154217 ATGAATTGGGGCCTCACAGATTATTTTGGTCACACCCACTGTGAATGGGAAGGTTCTTCGGATTGCTGTTTTATTAGCTAAGCAGGAAGGCGTGGGGAGAAAGGGGACAACTGAAGAATGCATCTGTCTTATGAAAT-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14046253 137 +  15232693 ATGAATTGGGGCCTCACAGATTATTTTGGACACACTCACTGCGAATGGAAAGGTTCTTCAGATTGCTGTTTTATTAGCTAAGCAGGAAGGGGTGGGTAGGAAGGGGACAACTGAAGAATGGATCTGTCTTATGAAAT-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      295867 137 +    446445 ATGAATTGGGGACTCACAGATGCTTTTGGACACACCCACTATGAAAGGGAAGGTTCTTCAGATTGTTGTTGTGTTAGCTAAGCAGGAAGGGGTGGGGAGGAAGGGGACAACTGAAGAATGGATCTGTCTTATGAAAT-
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      157547 137 +   1371726 ATGAATTGGGGACTCAGAGGTGCTTCTGGACACACCCACTATGAATGACAAGGATCTGCAGAATGCTACTGTGTCAGCAAAGCAGGAAGGGGTGGGGAGGAAGGGGGCAAGTGAAGAATAGATCTCTCTTATGGAAA-
i proCoq1.NW_012150019v1   I 602 I 283
s otoGar3.GL873550          15349156 122 -  18854210 ATGAATTGGGAACTCACAGGTACTTTTAGATACACACACTATGAA--------------AGAATGCTATTGTGTCAGCCAAGCAGG-AGGAGAGGGGAGCAAGGGGGTAACCCATGAATAGATCTGTCTTATGGAAA-
i otoGar3.GL873550         C 0 I 16
s canFam3.chr12             70397688 124 -  72498081 ----ATTG---------AGATGCAATTGGACATCCCCACTGTGAATGACGGGCTTTCGTCTGATGTTTTTGTATTAGCAAAGTGGGAAACAGTTAAGAAAAAGGGGATGACTTACAAAACTATTTGTCCTAGGGGAA-
i canFam3.chr12            C 0 I 17
s dasNov3.JH569424            504449 127 +    935526 ATTAATTGGGGATTCACAGATGTCATCAG----------TGTGAATGGCGAGGTTTGCCGAATGGCCATGTTAATACATAA-CAGGAGGGAGTGAGGATGAAGGGCATAACTAACAAAGGAATCTATCTCATGGACAA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34358346 1719 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4487055 1600 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=719784.000000
s hg38.chr6_KI270758v1_alt     49666 191 +     76752 GTAAACTATCATATG---------ATTCCCTGACAGGGCTAACTTCTCCATGCTCTAAAGAGAAAATCAAGTAAATCCAATTACTAAGGCAAATGGGG-AAAATAGTTCTCTGGAGATGT--TAACGTCTCCAGCTGATACTGCTTCCTTCTTTACTTCC-CTG-GGAGGCTGTTTC--CTAATACC---TTTTTTTTTCTTA------------------------------------------------ACATCCA---------
s panTro5.chr6             142752956 194 - 175400573 GTAAACTATCATATG---------ATTCCCTGACAGGGCTAACTCCTCCATGCTCTAAAGAGAAAATCAAGTAAATCCAATTACTAAGGCAAATGGGG-AAAATAGTTCTCTGGAGATGT--TAACGTCTCCAGCTGATACTGCTTCCTTCTTTACTTCC-CTG-GGAGGCTGTTTC--CTAATACCTTTTTTTTTTTTCTTA------------------------------------------------ACATCCA---------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140901183 193 - 173848474 GTAAACTATCATATG---------ATTCCCTGACAGGGCTAACTCCTCCATGCTCTAAAGAGAAAATCAAGTAAATCCAATTACTAAGGCAAATGGGG-AAAATAGTTCTCTGGAGATGT--TAACGTCTCCAGCTGATACTGCTTCCTTCTTTACTTCC-CTG-GGAGGCTGTTTC--CTAATACC-TTTTTTTTTTTCTTA------------------------------------------------ACATCCA---------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2419150 193 +   2807050 GTAAACTATCATATG---------ATTCCCTGACAGGGCTAACTCCTCCATGCTCTAAAGAGAAAATCAAGTAAATCCAATTACTAAGGCAAATGGGG-AAAATAGTTCTCTGGAGATGT--TAACGTCTCCAGCTGATACTGCTTCCTTCTTTACTTCC-CTG-GGAGGCTGTTTC--CTAATACC-TTTTTCTTTTTCTTA------------------------------------------------ACATCCA---------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45711703 190 - 122973662 GTAAACCATCATATG---------ATTCCCTGACAGGGCTAACTCCTCCATGCTCTAAAGAGAAAATCAAGTAAATCCAATTACTAAGGTAAATGGGG-AAAATCGTTCCCTGGAGATGT--TAATGTCTCCAGCTGATACTGCTTCCTTCTTTACTTCC-CTG-GGAGGCTGTTTC--CTCATAAC----TTTTTTTTCTTA------------------------------------------------ACATCCA---------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138672776 173 - 171630274 ATAAACCATCATATG---------ATTCCCTGACAGGACTAACTCCTCCATGTTCTAAAGAGAAAATCAAGTAAATCCAATTACTAAGGTAAA------------------TGGAGATGT--TAACGTCCCCAGCTGATACTGCTTCCTTCTTTACTTCC-CTG-AGAGGCTGTTTC--CTAATAAC----TGTTTTTCCTTA------------------------------------------------ACATTCA---------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            226541 191 +   1154217 GTAAACCGTGATATG---------ATTCCCTGACAGGATTAACTCCTCTATGTTCTAAAGAGAAAATCAAGTAAATCCAATTACTAAGGTAAATGGGAAAAAACAGTTTTCTGGAGATGT--TAACGTCTCCAGCTGATACTGCTTCCTTCTTTACTTCC-CTG-GGAGGCTGTTTC--CTAATAAC----TTTTTTTCCTTA------------------------------------------------ACATTCA---------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14046390 239 +  15232693 GTAAACCATGATATG---------ATTCCCTGACAGGATTAACTCCTCTATGCACTACAGAGAAAATCAAGTAAATCCAATTACTAAGGTAAATGGGAAAAAATAGTTTTCTGGAGATGT--TAACGTCTCCGGCTGATACTGCTTCCTTCTTTACTTCC-CTG-GGAGGCTGTTTC--CTAATAAC----TTTTTTTCCTTAACATTCATTACTTTTATTATATTTGAGGTGATTCAAAATGGATGGAAGACATTCA---------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      296004 190 +    446445 GTAAACCATGATATG---------ATTCCCTGACAGGACTAACTCCTCCATGCTCTAAAGAGAAAATCAAGTAAATCCAATTGCTAAGGTAAACGGGACAAAATAGTTTTCTGGAGATGT--TAACGTCCCCGGCTGATACTGCTTCCTTCTTTACTTCC-CTG-GGAGGCTGTTTC--CTGATAAC----T-TTTTTCCTTA------------------------------------------------ACATTCA---------
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15349294 186 -  18854210 GTAAACTATCATGTG---------TTTCCCTGAGAGGAATAACTCCTCCATGTTCTAAAGAGAAAATAAGGCGAATTCATTTACCTTGCCAGG------GAAATAGTCCTCTGGAGGTACAGTAACATCCCTGGCTGATTCTGCTGTCCACTCTACTCCC-CCACTGAGGTAGCTTC--CTAACAGT------TTTTTTCTTA------------------------------------------------ACACCCA---------
i otoGar3.GL873550         I 16 C 0
s canFam3.chr12             70397829 171 -  72498081 GTAAATAATTATATGGCAAGAATAATTCCCTGGCAAGAATAATTCCCCCACATGCTAAAGAGAAAAACAGGCAAATCTATTTATCTTCTCAGG------GAAATAGTTCTCTAGAGATAT--TACCATCTCTGACTCAGAC------------------------TAAGGCTGCTTC--CTAACACC-----ATTTTTTCTTA------------------------------------------------ACACCCA---------
i canFam3.chr12            I 17 I 3
s dasNov3.JH569424            504576 190 +    935526 GAGAGTTTCTGAAAG---------GTTCTCTGGCAGGAATAACTCCTCCACATGCTAAAGAGAAAATCAGGCAAATCCACTTACC-CGCCAGA------GAAATAGTTCTCTGAAGATGT--TAGCATTTCTGGCAGATGTTGCTTCCTTCTTTACTCCCACTA-CAA--CTGTTTCCTCTAATGCC--------TTTCCTTA------------------------------------------------ACACCCATGACTATAA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34358346 1719 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4487055 1600 + 123392446 I
e proCoq1.NW_012150019v1      157684 283 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=256839.000000
s hg38.chr6_KI270758v1_alt     49857 69 +     76752 T-------------TACTGTTACTGTGTTCAAGGTGATTCAA---AATGGATGGAGGAATACATATATTTCTGACATG-GGGGGAC
s panTro5.chr6             142753150 69 - 175400573 T-------------TACTGTTACTATGTTCAAGGTGATTCAA---AATGGATGGAGGAATACATATATTTCTGACATG-GGGGGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140901376 69 - 173848474 T-------------TACTGTTACTATGTTCAAGGTGATTCAA---AATGGATGGAGGAATACATATATTTCTGACATG-AGGGGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2419343 69 +   2807050 T-------------TACTGTTACTATGTTCAAGGCGATTCAA---AATGGATGGAGGAATACATATATTTCTGACATG-GGGGGAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45711893 69 - 122973662 T-------------TACTGTTATTATGTTCAAGATGATTCAA---AATGGATAGAGGAATACATATATTTCTGACATG-GGGGGAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138672949 70 - 171630274 T-------------TACTTTTAATATGTTGGAGGTGATTCAA---AACAGATGGAAGATTCCCTGTATTTCTGAGATGTGGGGGAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            226732 69 +   1154217 T-------------TACTTTTATTGTGTTCGAGGTGATTCAA---AACAGATGGAAGACTCCATGTATTTCTGAGACGTGGGGG-C
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14046629 70 +  15232693 T-------------TACTTTTATTATGTTCGAGGTGATTCAA---AACAGATGGAAGATTCCATGTATTTCTGAGATATGAGGAAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      296194 70 +    446445 T-------------TACTTTTATTATGTTCGAGGTGATTCAA---AACGGATGGAAGATTCCATGTATTTCTGAGATGTGGGGGAC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15349480 82 -  18854210 TCAAGTGTTCAAGGTGATTATATTATATTCAAGGTGATTCAA---ACTGGATTAAAGAATCCCTATTTTTCTGACATGTGGGAGT-
i otoGar3.GL873550         C 0 I 4
s mm10.chr17                34360065 71 +  94987271 T-------------TCCCATTAGTACGTTCAAT-TGGCTCAAAAGAATGGACGTGAGAATCTGTGTATTGCTAAGCTGCAGGTAG-
i mm10.chr17               I 1719 C 0
s canFam3.chr12             70398003 69 -  72498081 T-------------TATTATTGTTATGTTCTAGGTGATTGAA---GATGGATGGAAGAATCTATGTATTTCTGAGGTGTGGAGAG-
i canFam3.chr12            I 3 C 0
s dasNov3.JH569424            504766 68 +    935526 T-------------TACCTTTACCATGTCTAAGGTGATTTGA---GATGGATGAAGTAATCCTTGTGTTGCTAAGA-GTAGGCGA-
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4487055 1600 + 123392446 I
e proCoq1.NW_012150019v1      157684 283 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1854211.000000
s hg38.chr6_KI270758v1_alt     49926 436 +     76752 AGGGAACGTACTGATGTATTTCAATATCAGGAACATTTACAAATAAGTCACACATTTTCTAAGGGTCCAAGGGAAGGGAGTGGATCTCTCTTTTACCAGCAAGTGATTAAGACAGAATTCCCATTTATGGAAAATATAGTCCCCTTAGTTTGGGTGTGGGAGTTTCA-CGTTAAATAGAG-AAAAAAAATTCATGATTT-CATAAACTGTTGTAAACTAGGATTTCTC-AAAACCATC--TTACCCATTGAAT----AGAATATTTAGCTAC-AAATAAC------------------------------------GCCTCGTGGAGATTCGCATTTCACATGCTCCCGTTTATCCACTTGCTTCCGAAGATCACAGCCACC---------AGCAAAAGATGCAGGAA--GAACAGGCCCCTGGGGAGTGATTTCTGACTTTGTGTTAAATCTTCAATC-AAATTGGAGTTCAAGACATCATCT-AAAATACCAGA
s panTro5.chr6             142753219 437 - 175400573 AGGGAATGTACTGATGTATTTCAATATCAGGAACATTTACAAATAAGTCACACATTTTCTAAGGCTCCAAGGGAAGGGAGTGGATCTCTCTTTTACCAGCAAGTGATTAAGACAGAATTCCCATTTATGGAAAATATAGTCCCCTTAGTTTGGGTGTGGGAGTTTCA-CGTTAAATAGAG-AAAAAAAATTCATGATTT-CATAAACTGTTGTAAACTAGGATTTCTC-AAAACCATC--TCACCCATTGAAT----AGAATATTTAGCTAC-AAATAAC------------------------------------GACTCGTGGAGATTCGCATTTCACATGCTCCCGTTTATCCACTTGCTTCCGAAGATCACAGCCACC---------AGCAAAATATGCAGGAA--GAACAGGCCCCTGGGGAGTGATTTCTGACTTTGTGTTAAATCTTCAATCTAAATTGGAGTTCAAGACATCATCT-AAAATACGAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140901445 437 - 173848474 AGGGAATGTACTGATGTATTTCAATATCAGGAACATTTACAAATAAGTCACACATTTTCTAAGGCTCCAAGGGAAGGGAGTGGATCTCTCTTTTACCAGCAAGTGATTAAGACAGAATTCCCATTTATGGAAAATATAGTCCCCTTAGTTTGGGTGTGGGAGTTTCA-CGTTAAATAGAG-AAAAAAAATTCATGATTT-CATAAACTGTTGTAAACTAGGATTTCTC-AAAACCATC--TCACCCATTGAAT----AGAATATTTAGCTAC-AAATAAC------------------------------------GACTCGTGGAGATTCGCATTTCACATGCTCCCGTTTATCCACTTGCTTCCGAAGATCACAGCCACC---------AGCAAAATATGCAGGAA--GAACAGGCCCCTGGGGAGTGATTTCTGACTTTGTGTTAAATCTTCAATCTAAATTGGAGTTCAAGACATCATCT-AAAATACCAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2419412 437 +   2807050 AGGGAACGTACTGATGTATTTCAATATCAGGAACATTTACAAATAAGTCACACATTTTCTAAGGCTCCAAGGGAAGGGAGTGGATCTCTCTTTTACCAGCAAGTGATTAAGACAGAATTCCCATTTATGGAAAATATAGTCCCCTTAGTTTGGGTGTGGGAGTTTCA-CGTTAAATAGAG-AAAAAAAATTCATGATTT-CATAAACTGTTGTAAACTAGGATTTCTC-AAAACCATC--TTACCCATTGAAT----AGAATATTTAGCTAC-AAATAAC------------------------------------GACTCGTGGAGATTCGCATTTCACATGCTCCCGTTTATCCACTTGCTTCCGAAGATCACAGCCACC---------AGCAAAATATGCAGGAA--GAACAGGCCCCTGGGGAGTGATTTCTGACTTTGTGTTAAATCTTCAATCTAAATTGGAGTTCAAGACATCATCT-AAAATACCAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45711962 473 - 122973662 AGGGAACGTACTGATGTATTTCAATATCAGGAACATTTACACATAAGTCACACATTTTCTAAGGCTCCAAGGGAAGGGAACGGGTCTCTCCTTTATCAGCAAGTGATTAAGACAGAATTCCCATTTATGGAAAATATAGGCCCCTTAGTTTGGGTTTGGGAGTTTCA-TGTTAAATAGAGAAAAAAAAATTCATGATTT-CATAAATTGTTCTAAACTAGGATTTCTC-AAAACCATC--TTACCCATTGAAT----AGAATATTTAGCTAC-AAATAACTCCTCTTGGAGAATAGAATATTTAGCTACAAATAATTCCTCATGGAGATTCGCATTTCACATGCTCCCGTTTATCCACTTGCTTCCGAAGATCACAGCCACC---------AGCAAAAGATGCAGGAA--AAACAGGTCCCAGGGGAGTGATTTCTGACTTTGTGTTAAACATTCAGTCCAAATTGG-GTTCGAGACATCATCT-AAAATGTCAGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138673019 432 - 171630274 CGGGAACATGGTGATGTATTTCAATAGAAGGAACATTTACAAATAAGTCACAAGTTTTCTAAGGCTCCAAGGGAAGGGAGTAGATCTCTCCTTTACCAGCAAGTGATCAAGACAGAATTCCCATTTATGGAAAATATAGTCCTCTGAGTTTGGGTTTGGGAATTTCA-TACTAGAGGGGA-AAAAAA---TCATGATTT-CATAAATTGTTCTAAACTAAGATTTCTC-AAAACCATT--TTACCCATTGAAT----AGAATATTTAGCTAC-AGAAAAA--------------------------------------CTCATGGATCTTCACATTTCACATAGTCCCATTTATCCTCCTGCTTTCCAAGATCACAGCCACC---------AGCAAAAGATGCAGAAA--GCACAGGCCCCAGGGAAGTGATTTCTGACTTTATGTTAAATATTCTGTCTAAATTGGAGTTTCAGACATCATCT-AAAATGTCAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            226801 433 +   1154217 AGGGAACATAGTGCTATATTTCAATATAAGGAACATTTACAAATAAGTCACAAGTTTTCTAAGGCTCCAAGGTAAGGGAGCAAGTCTCTCCTTTACCAGCAAGTGATTAAGACAGAATTCCCATTTATGGAAAATATAGTCCTCTTAGCTTGGGTTTGGGAGTTTCA-TACTAGAGGGGA-AAAAAA---TCATGATTT-CATAAATTGTTCTAAATTAAGATTTCTC-AAAACCATC--TTACCCATTGAAT----AGAATATTTAGCTACAAAAAAAA--------------------------------------CTCATGGATCTTCACATTTCACATACTCCCATTTATCCACCTGCTTTCCAAGATCACAGCCACC---------AGCAAAAGATGAAGAAA--GCACAGGCCCCAGGGAAGTGATTTCTGACTTTATGTTAAATATTCTGTGTAAATTGGAGTTTCAGACATCATCT-AAAATGTCAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14046699 431 +  15232693 AGGGAACATAATGCTGTATTTCAATATAAGGAACATTTACAAATAAGTCACAAGTTTTCTAAGCCTCCCAGGGAAGCGAGTAGGCCTCTCCTTTACCAGCAAGTGATTCAGACAGAATTCCCGTTTATGGAAAATATAGTTCTCTTAGTTTGGGTTTGGGAGTTTCA-TACTAGAGGGGA-AAAAAA---TCATGATTT-CATAAATTGTTCTAAATTAAGATTTCTC-AAAACCATC---CACCCGTTGAAT----AGAATATTTAGCTAC-AAAAAAA--------------------------------------CTCATGGATCTTCACATTTCACATACTTCCATTTATCCACCTGCTTTCCAAGATCACAGCCACC---------AGCAAAAGATGCAGAAA--GCACAGGCCCCAGGGAAGTGATTTCTGACTTTACGTTAAATATTCTGTCTAAATTGGAGTTTCAGACATCATCT-AAAATGTCAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      296264 432 +    446445 AGGGAACATAGTGATGTATTTCAATATAAGGAACATTTACAAATAAGTCACAATCTTTCTAAGACTCCAAGGGAAGGGCGTAGGCCTCTCCTTTACCAGCAAGTGATTAAGACAGAATTCCCGTTTATGGAAAATATAGTCCTCTTAGTTTGGGTCCGGGAGTTTCA-TGCTAAAGGGGA-AAAAAA---TCATGATTT-CATAAATTGTTCTAAATTAAGATTTCTC-AAAACCATC--TTACTTATTGAGT----AGAATATTTAGCTAC-AAAAAAA--------------------------------------CTCATGGATCTTCACATTTCACATACTCCCATTTATCCACCTGCTTTCCAAGATCACAGCCACC---------AGCAAAAGATGCAGAAA--GCACAGGCCCCAGGGAAGTGATTTCTGACTTTATGTTAAATATTCTGTCTAAATTGGAGTTTCAGACATCATCT-AAAATGTCAAA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      157967 431 +   1371726 AGGGAAGATACTAATGCATTTCACTATCATGGACCTTTATATATAAGCCACAAATTCTCTAAGGCTCCAAGTGAAGAGCGTGGTCTCTTCCC---CCAGCAAGTGATAAAGACAGAATTTCCGTCTGTGGAAAATATGGTC--CTCTGTTTGGGTTTGGGAGTTTCG-TTTTCAATAGAG-AAAGAA-TTTCATGATTA-CATAGACTGTTCTAAATTAGGATTTCCCAAAAAACATT--TTCTCCAGTGAAC----AGAATATTTAGATAC-AAAGAAC------------------------------------TTCTCATGGAACCTCCCATTTCACACGCTCCCGTTTATCCACTCATATCCCAAGGTCATGACCACC---------AGCAAAAGGAATGGGAA--GGCTAGACCCCAGGAAAGTGATTTCTGACTTTATATTAAATATTCTGCTCACATTGGAA-TCCAGATATCATCT-AATATGTCAGA
i proCoq1.NW_012150019v1   I 283 C 0
s otoGar3.GL873550          15349566 433 -  18854210 AGGGCTGATACTAAAGCTTTTCACTATCATGGACATTTACAAATAAGACACAAAATTTCTAAGGCTTCAAGTGAAGGGAATGGGTCTCTTCT---CTAGCAAGTGATAAAGTCAGAACTTCCATATGTGGAAAATATGGTCCACTTTGTTTGAGTTTGGAAGTTTTG-TGGTGAACAGAG-AAAGAA-TTTTATGATTA-CATACATTGCTATAAACTAGAATTTCTCAAAAAATATT--TCCCCCATTGACT----AGAATATTTGAATAC-AAAGAAT------------------------------------TTCTCATGGAACTTCCTATTTTACGTGCTCCAGTTTGTTCACTTGCATCCCAAGATCACAGCCACC---------AGCAAAAGACCTGGGAT--GAATAGACCCCAGGAGAGTGATTTATGACTTTATATTAAGAATTCTGCTTAAATTGGAA-ACCAGATATCATCT-AAAATGTCAGA
i otoGar3.GL873550         I 4 I 285
s mm10.chr17                34360136 348 +  94987271 -AGCTGGACACTGATTCATGACACT--CAGAGACATTGAAATTTAAGTCAAATGTTATCTGTGGGTGCAAGTGAAAGGCTTATTCATCTGTTTTCTCAGCCAGTGATATAAACAGC--------------------------------------TGTGATGTTTTTA------------A-AAAGGCACTCTATGGTTTACACAAATTAGTCTAAAATA-GATTTCCC-----------------CACTGCA-----AGAA-----AGGTAC--AGTAAT------------------------------------TTCTCA--------ACCATTTTAC-------------------TGCATACCAAAATTGCAACGGCCCACGAATCTAACAAACCACGGAAGAAATGAAAATAGCCCATAAATGTGATGTCTGAGTTAATAATAAATGTCTCATTTAAACTAGAGTTCT-GATATCATCCAAAAACAGCGGA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70398072 402 -  72498081 AGGAAAGCAGCTG------TTCACTATCAGGAACCTTTGAAAATAAACCACACATTTTCTAAGGCTGTAGATGAAGGGAGTGAGTCTCTTTCCC-TCAGCAAGTGAT------AGAGTTATCATCTATGGGAAATATAGTCC-CTTTGTTTGGGTTTGAGAGCG--A-TTTTGAATAAGG-AAAGAA-TTTCATGATTA-CATA---------AAACTAGGATTTCTC-AAGAACATT--TT-CCCATTGATTGTAAGGAATACTTAGAAAC-CAAGGCT-------------------------------------CCTCAAGGGCATCTACAT--------GCCCAGGTTATCTGCTTGCTCCCTAAGATCACAACCACC---------AACAGAAAA-AAGTGAA--GAGTAATCCCCATTGAGATGATTTCTAGCTTTATAGTAAACATTCTAATTA-ATCAGAG-TCAAGATATCATCT-AAAATGCCACA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            504834 372 +    935526 -------GCACACACACATTTCACTAGCAGGGACATCTGAAAATAAACCATGGATCTTCTAAGGCTCTAGATGGAGGGAGTGAATCTCTTTCCC-CAAGCAGGAGATAGCAGCAGA---------------AAATATCATTA-GTTTGTTTGGATTTGGGAATTGCAGTGTTGAA---AA-AAGGAA---TCGTGCTTA-TATGAATTTTTCTAAATTAGGATTTCTC-AAGAACATTTTTTTTTTGTTGAGC----GGAATATTTGGATAC------CC--------------------------------------------GAGCTTCCCATTTCA-ATACACTGGTTTG-ATACTTGCCACCCAAAATCAC----ATC---------AACAGAAGGAATGGAAA--GTATAGGA---ATGGAGGTGATTTCTGAAAT---------------GTATGAATAGGTG-TCAAGAAATCATCT-AAAATATCAGA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4487055 1600 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=787330.000000
s hg38.chr6_KI270758v1_alt     50362 165 +     76752 CAATGTGCCCAATACAGATAATTTTAAGATGAAA----AAGGCAGAG---------------------------------------------TTCATGGCACAGAGGAATT-AATGAATAAA-TTACAGCTCATCTCTGTTTGCAGTGCTAGAGGCGT--TGCAAAATGTCATGATGTCCCCCTTCTCCGATTCCCCTT---T-CTGGATCTGGAGAAAAGT
s panTro5.chr6             142753656 165 - 175400573 CAGTGTGCCCAATACAGATAATTTTAAGATGAAA----AAGGCAGAG---------------------------------------------TTCATGGCACAGAGGAATT-AATGAATAAA-TTACACCTCATCTCTGTTTGCAGTGCTAGAGGCGT--TGCAAAATGTCATGATGTCCCCCTTCTCCGATTCCCCTT---T-CTGGATCTGGAGAAAAGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140901882 165 - 173848474 CAGTGTGCCCAATACAGATAATTTTAAGATGAAA----AAGGCAGAG---------------------------------------------TTCATGGCACAGAGGAATT-AATGAATAAA-TTACACCTCATCTCTGTTTGCAGTGCTAGAGGCGT--TGCAAAATGTCATGATGTCCCCCTTCTCCGATTCCCCTT---T-CTGGATCTGGAGAAAAGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2419849 165 +   2807050 CAGTGTGCCCAACACAGATAATCTTAAGATGAAA----AAGGCAGAG---------------------------------------------TTCATGGCACAGAGGAATT-AATGAATAAA-TTACACCTCATCTCTGTTTGCAGTGCTAGAGGCGT--TGCAAAATGTCATGATGTCCCCCTTCTCTGATTCCCCTT---T-CTGGATCTGGAGAAAAGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45712435 165 - 122973662 CTACGTGCCCAATACAGATAATTTTAAGATGAAA----AGGGCAGAG---------------------------------------------TTCATGGCACAGAGGAATA-AATGCATAAA-TTACACCACATCTGTGTTTGCAGTACTAGAGGCAT--TGCAAAATGTCATGATGTCCCCCTTCTCTGATCCCCCTT---T-CTGGATCTGGAGAAAAGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138673451 164 - 171630274 CAATGTGCCCAATACAGACAATTTTAAGATGGAA----AAGGCGGAG---------------------------------------------TTCATGGCACAGAAGAATT-AATGAATAAA-TCACACTACATCT-TGTTTACAGTGCTAGAGGCGT--TCCAAAATGTCATCATGTCCCCCTTCTCTGATTCCCCTT---T-CTGGATCTGGAGAAAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            227234 165 +   1154217 CAACGTGCCCAATACAGATAACTTTAAGATGAAA----AAGGCAGAG---------------------------------------------TTCATGGCGCAGAGGAATG-AATGAATAAA-TTACACTACATCTCTGTTTACAGTGCTGGAGGCAT--TGCAAAATGCCATCATGTCCCCCTTCTCTGATTCCCCTT---T-CTGGATCTGGAGAAAAAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14047130 165 +  15232693 CAATGTGCCCAATACAGATAATTTTAAGATGAAA----AAGGCGGCG---------------------------------------------TTCATGGCAGAGAGGAATT-AATGAATAAA-TTACACTACATCTCTGTTTACAGTGCTAGAGGCAT--TGCAAAATGTCATCATGCTCCCCTTCTCCGATTCCCCTT---T-CTGGATCTGGAGAAAAAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      296696 165 +    446445 CAATGTGCCCAATACAGATAATTTTAAGATGAAA----AAGGCGGAG---------------------------------------------TTCATGGCACAGAGGAATT-AATGAATAAA-TTACACTACATCTCTGTTTACAGTGCCAGAGGCAT--TGCAAAATGTCATCATGTCCCCCTTCTCTGATTCCCCTT---T-CTGGATCTGGAGAAAAAT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      158398 161 +   1371726 CAAAGTGCCTGATACAGACAATGTTAAGAT-GAA----AAGGCAGAG---------------------------------------------TTTGAAGCATGGAGAAATT-CCTGAGTAAA-TTACA---CATCTTTGTTTGCAGTACTAGAGACAC--AGCAAAATGTCATTATAGCCCCCTTCTCATAGTCACCTG---T-CTGCATCTGAAGAAATAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15350284 162 -  18854210 CAAAGTGCCTGATACAGACAATGTTAAGATGGAA----AAGGCGGAG---------------------------------------------TTTGAAGCATAGAGAAATT-CTTCACTAAA-TTACA---CATCTTTCTTTGCAGCAAAAGAGAGAC--AGCAAAATATCACTCTAGCCCCCTTCTCATATTCACCTG---T-CTGGATCTGAAGAAATAT
i otoGar3.GL873550         I 285 C 0
s mm10.chr17                34360484 207 +  94987271 CAAGGAGCCTACTACAGAGAACATGAGAAGCAAAGTTGAGGGCAGAGATGTCATCATGATTAAATTAGGACATAGACATTCCTCCTGAATAAATTAGGGCACAGACGACCT-CATGAATAAA-TCACACCACATCT----TCAAAGTACCAGAGTCACAAAGCAAACTGT-GTCATGTTTCCCTCCTCTCCCTTTCATC---TACTGAGTCTGAAGA-----
i mm10.chr17               C 0 C 0
s canFam3.chr12             70398474 132 -  72498081 ------------------------------------------CAGAG---------------------------------------------TTTGTAGCATGGGAAAGTTCAATGAATAAATTTATAACACATCTTTGTTGGCAGTTCTAGTGACAT-AAGCAAAATGTCATTATGT-CCCTTTCTCTTATTCTCCTCCTGT-CTGGATCTGAAGAAAAAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            505206 160 +    935526 -AAAGTGCCTGACATAGACAATATGAAGA-GGAA----AAGGCCGAG---------------------------------------------TTCATGGCATGGAGGAGCT-CATGAACAAA-TTACGAAACATAATTGTACTCAGTGATAGAGACAT-ATGCAAAATATCGTTCTGTCCA----CTCTTGTTCTCTTG---T-CTGGCTCTGAAGAAAAGT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4487055 1600 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=459873.000000
s hg38.chr6_KI270758v1_alt     50527 78 +     76752 ACTGGTCAGATGCTAAAATGT-AAAGACCCAGACTGGGGAACAAATAAAGTGTATCTGAACTCACATTTGAATGGGGAG
s panTro5.chr6             142753821 78 - 175400573 ACTGGTCAGATGCTAAAATGT-AAAGACCCAGCCTGGGGAACAAATAAAGTGTATCTCAACTCACATTTGAATGGGGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140902047 78 - 173848474 ACTGGTCAGATGCTAAAATGT-AAAGACCCAGCCTGGGGAACAAATAAAGTGTATCTCAACTCACATTTGAATGGGGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2420014 78 +   2807050 ACTGGTCAGATGCTAAAATGT-AAAGACCCAGACTGGGGAACAAATAAAGTGTATCTGAACTCACATTTGAATGGGGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45712600 78 - 122973662 ACTGGTCAGATGCTAAAATGT-AAAGACCCAGACCGGGGAACAAATAAAGTGTATCAGAACTCAGATTTGAATGGGGAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138673615 78 - 171630274 ACTTGTCCGATGCTAAAATGT-AAAGACCCAGACTGGGGAACAAATAAAGTGTATCTGTACTCAAATTTGAATGGGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            227399 74 +   1154217 ACTTGTCTGATACTAAAATGT-AAAGACCCAGACTGGGGAAC----AAAGTGTATCTGTACTCAAATTTGAATGGGGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14047295 77 +  15232693 ACTTCTCCGATGCTAAAATGT-AAAGACCCAGAC-AGGGAACAAATAAAGTGTATCTGTACTCAAATTTGAATGGGGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      296861 78 +    446445 ACTTGTCCGATGCTAAAATGT-AAAGACCCAGACTGGGGAACAAATAAAGTGTATCTGTACTCAAATTTGAATGGGGAG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4488655 76 + 123392446 ACTAGTCAGGTGGTAAAATGT--AAGATCCAGACTGGAGAACAAATAAAGTGT-ACCGAACTCCAGTTTGAATGGGGAG
i micMur3.chr6             I 1600 I 116
s proCoq1.NW_012150019v1      158559 78 +   1371726 ACTAGTCAGATGGTAAAATGT-AAAGATCCAGACTGGAGAACAAGTAAAGTGTAACTGAGCTCCAGTTTGAATGGGGAG
i proCoq1.NW_012150019v1   C 0 I 3
s otoGar3.GL873550          15350446 78 -  18854210 ACTAGTCAGGTGGTTAAATGTAAAAGATCCTGACAAG-GAACAGATGAAGTGTGACTGAACCCCTATTTGAATGGGCAG
i otoGar3.GL873550         C 0 I 3
s mm10.chr17                34360691 54 +  94987271 ----------TGCTAATGTTT-AAAGAT------------ACAAATAAAACA-ACCAGAACTC-CATTTGACTGGGAAG
i mm10.chr17               C 0 I 2
s canFam3.chr12             70398606 78 -  72498081 ACTGCTCATATGCTAAAGTTT-AAAGATCCAGAATGGGGAACAAGCAAAGTGTATATGAAATCCAATTTGAATGGGAAG
i canFam3.chr12            C 0 I 4
s dasNov3.JH569424            505366 77 +    935526 ACTGATCAGATGCTGAAAGTG-AAAGAACCAGACTGGGGGG-AGGTAAAGTGGATTTAAACTCAAATTTGAACGGGAAG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=511501.000000
s hg38.chr6_KI270758v1_alt     50605 110 +     76752 ACTGAGGTCG-ACTTTCTGCTCCTCAGACTCCTGAACTCCGGCCA--CCTCCCTGTGAGCAACGTCACTGGGATCTCAGCCTCTGTGATTTCTGCCTCTGTGGGCTCTGGGTG
s panTro5.chr6             142753899 110 - 175400573 ACTGAGGTCG-ACTTTCTGCTTCTCAGACTCCTGAACTCCGGCCA--CCTCCTTGTGAGCAACATCACTGGGATCTCAGCCTCTGTGATTTCTGCCTCTGTGGGCTCTGGGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140902125 110 - 173848474 ACTGAGGTCG-ACTTTCTGCTTCTCAGACTCCTGAACTCTGGCCA--CCTCCTTGTGAGCAACATCACTGGGATCTCAGCCTCTGTGATTTCTGCCTCTGTGGGCTCTGGGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2420092 109 +   2807050 ACTGAGGTCG-ACTTTCTGCTTCTCAGACTCCTGAACTCCGGCCA--CCTCCTTGTGAGCAACTTCACTGGGATCTCAGCCTCTGTGATTTCTGCCTCTGT-GGCTCTGGGTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45712678 110 - 122973662 ACTGTGGTTG-ACTTTCTGCTTCTCAGACTCCTGAACTCCGGCCA--TCTCCCTGTGAGCAACATCACTGGGATCTCAGCCTCTGTGATTGCTGCCTCTGTGGGCCGTGGGTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138673693 112 - 171630274 ACTTTGGTCA-ACTTTCTGCTCCTCAGACTCTTGAACTCCAACCATCTCTCCCTGTGAGCAGCGTCACTGCGATCTCAGTCTCTGTGATTTCTGCCTCCATGGGCTCTGGGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            227473 112 +   1154217 ACTTTGGTCA-ACTTTCTGCTCCTCAGACTCCTGAACTCCGACCATCTCTCCCTGTGAGCAGTGTCACCGCGATCTCAGTCTTTGTGATTTCTGCCTCCGTGGACTCTGGGTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14047372 111 +  15232693 ACTTTGGTCA-ACTTTCTGCTCCTCAGACTCCTGAACTCTGATCATCTCTCCCTGTGAGCAGTGTCACTGCGATCTCAGTCTCTGTGATTTCTG-CTCCATGGGCTCTGGGTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      296939 112 +    446445 ATTTTGGTCA-GCTTTCTGCTCCTCAGACTCCTGAACTCCGACCATCTCTCCCTGTGAGCAGCGTCACTGCGATCTCAGTCTCTGTAATTTCTGCCTCCATGGGCTCTGGGTG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      158640 110 +   1371726 ACTGTGTCCC-CCTTTCTGCTCCCCAGACCGCTGAACTCCTGTCC--TCTCCCTGTGAGCACAGTCACTGGGATCTCGGTCTCCGTAATTTGTGCCTCCACGGGCTCCAGGAC
i proCoq1.NW_012150019v1   I 3 C 0
s otoGar3.GL873550          15350527 110 -  18854210 ACTCTGTCTC-CCTGTCTGCTGCCCAGACCCCTGAACTCCTGTCC--TCTCCCTGTGTGCAACGTCACTAGGATCCCGGTCTCTATGATTTGTTCTTCCATGGGCTCTGGGCC
i otoGar3.GL873550         I 3 C 0
s mm10.chr17                34360747  97 +  94987271 ACTCTGGTAACATTGTCTGCTTCCCAGGCTG-TGGGCTCCCACCT--CCTCCCTATGAAGGACTACCCCAGG-TCTCGGT------------TCGATCTGTGGACTCTGGGAT
i mm10.chr17               I 2 C 0
s canFam3.chr12             70398688 107 -  72498081 CTTTTGGATG-ACT---TGTTCCCTGGACCCATGAACTCCTACCC--TCTCCCTATGAGCGATTTTACTGGGATCTTGGTTTCCGTGATTTGTGCTTCCATGGTCTCCAGGCC
i canFam3.chr12            I 4 C 0
s dasNov3.JH569424            505443 107 +    935526 ACTTTGGACC-ACCTTCTACTCCCAGG---CCTGAATATGTGCCC--TCTCCCTGGAACCAGTGTCGCTGAGATCTTGGGCTCCAGGCTGTGGGCCTCCATGTGCTCTGGGGC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4488731 116 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=2018006.000000
s hg38.chr6_KI270758v1_alt     50715 272 +     76752 TCAGAGCTGTG-GCT---------------------------------------------------TCCCTCTGCAGGTCTGGGGTCTGCCCCTAGCATCCACATGGAGGGACCTGGGGAGAGTGGAGTCCAGCTTGTGTGCACTGCAAGGGGCTGGTTCCCAGAGCCCCAGGTGTATTGGGAAGACATCCGGGGAGAGAAGCTGCTGGCCGTGTCTGAGCATCGCATCCAAGATAAAGATGGCCTGTTCTATGCGGAAGCCACCCTGG-TGGTCAGGAACGCCTCTGCAGAGTCTGTGTCCTGCTTGGTCCACAACCCCGTCCT
s panTro5.chr6             142754009 272 - 175400573 TCAGAGCTGTG-GCT---------------------------------------------------TCCCTCTGCAGATCTGGGGTCTGCCCCTAACATCCACATGGAGGGACCTGGGGAGAGTGGAGTCCAGCTTGTGTGCACTACAAGGGGCTGGTTCCCAGAGCCCCAGGTGTATTGGGAAGACATCCAGGGGGAGAAGCTGCTGGCCGTGTCTGAGCATCACATCCAAGATGAAGATGGCCTGTTCTATGTGGAAGCCACCCTGG-TGGTCAGGAACGCCTCTGCAGAGTCAGTGTCCTGCTTGGTCCACAACCCCGTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140902235 272 - 173848474 TCAGAGCTGTG-GCT---------------------------------------------------TCCCTCTGCAGATCTGGGGTCTGCCCCTAACATCCACATGGAGGGACCTGGGGAGAGTGGAGTCCAGCTTGTGCGCACTACAAGGGGCTGGTTCCCAGAGCCCCAGGTGTATTGGGAAGACATCCAGGGGGAGAAGCTGCTGGCCGTGTCTGAGCATCACATCCAAGATGAAGATGGCCTGTTCTATGTGGAAGCCACCCTGG-TGGTCAGGAACGCCTCTGCAGAGTCAGTGTCCTGCTTGGTCCACAACCCCGTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2420201 271 +   2807050 TCAGAGCTGTG-GCT---------------------------------------------------TCCCTCTGCAGGTCTGGGGTCTGCCCCTAACATCCACATGGAGGGACCTGGGGAGAGTGGAGTCCAACTTGAGTGCACTACAA-GGGCTGGTTCCCAGAGCCCCAGGTGTATTGGGAAGATATCCAGGGAGAGAAGCTGCTGGCCATGTCTGAGCATCACATCCAAGATGAAGATGGCCTGTTCTATGTGGAAGCCACCCTGG-TGGTCAGGAACGCCTCTGCAGAGTCTGTGTCCTGCTTGGTCCACAACCCCGTCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45712788 271 - 122973662 TCAGACCTGTG-GCT---------------------------------------------------TCCCTC-GCAGGTCTGGGGTCTGCCCCTAACATCCACATGGAGGGACCTGGGGAAAGTGGAGTCCAGCTTGTGTGCACTACAAGGGGCTGGTTCCCAGAGCCCCAGGTGTATTGGGAAGACATCCGGGGAGAGAAGCTGCTGGCCATGTCTGAGCATCACATCCAAGATGAAGATGGCCTGTTCTATGTGGAAGCCACCCTTG-TGGTCAGGAACGCCTCTGCAGAGTCTGTGTCCTGCTTCGTCCACAACCCCATCCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138673805 273 - 171630274 TCAGAGCTGTG-GCT---------------------------------------------------TCCCTCTGCAGGTCTGGGGTCTGCCCCTAACATTCACATGGAGGGATCTGTGGAAAGTGGAGTCCAGCTTGTGTACACTACAAGGGGCTGGTTCCCAGAGCCCCAGGTGTATTGGGAAGACATCCAAGGAGAGAAGTTGCTGGCCGTGTCTGAGCATCACATCCAAGATGAAGATGGCCTGTTCTATGTGGAAACCACTCTTGTTGGTGAAGAACGCCTATGCAGAGTCCGTGTCCTGCTTCATCTACAACCCCGTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            227585 272 +   1154217 TCAGAGCTGTG-GCT---------------------------------------------------TCCCTCTGCAGGTCTGGGGTCTGCCCCTAACATTCACATGGAGGGATCTGGGGAAAGTGGAGTCCAGCTTGTGTGCACTACAAGGGGCTGGTTCCCAGAGCCCCAGGTGTATTGGGAAGACATCCAAGGAGAGAAGCTGCTGGCCATGTCTGAGCATCACATCCAAGATGAAGATGGCCTGTTCTATGTGGAAACCACTCTTG-TGGTCAAGAACGCCTCTGCAGAGTCCGTGTCCTGCTTCATCTATAACCCCGTCCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14047483 272 +  15232693 TCAGAGCTGTG-GCT---------------------------------------------------TCCCTCTGCAGGTCTGGGGTCTGCCCCTAACATTCACATGGAGGGATCTGGGGAAAGTGGAGTCCAGCTTGTGTGCACTACAAGGGGCTGGTTCCCAGAGCCCCAGGTGTATTGGGAAGACATCCAAGGAGAGAAGCTGCTGGCTGTATCTGAGCATCACATCCAAGATGAAGATGGCCTGTTCTATGTGGAAACCACTCTTG-TGGTCAAGAACGCCTCTGCAGAGTCCGTATCCTGCTTCATCTACAACCCCGTCCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      297051 272 +    446445 TCAGAGCTGTG-GCT---------------------------------------------------TCCCTCTGCAGGTCTGGGGTCTGCCCCTAACATTCACATGGAGGGATCTGGGGAAAGTGGAGTCCGGCTTGTGTGCACTACAAGGGGCTGGTTCCCAGAGCCCCAGGTGTTTTGGGAAGACATCCAAGGAGAGAAGCTGCTGGCTGTGTCTGAGCATCACATCCAAGATGAAGATGGCCTGTTCTATGTGGAAACCACTCTTG-TGGTCGAGAACGTCTCTGCAGAATCTGTGTCCTGCTTCATCTACAACCCCGTCCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4488847 272 + 123392446 TCAGCGCTGCG-GCT---------------------------------------------------TCTCCCTGCAGGTCTGGGCTCTGCCCCTGACATCCACGTGGCCGAATCTGCGGGAAGCGGAGTCCAGCTTGTGTGCACAGCAAAGGGCTGGTTCCCAGAGCCCCAGGTGTACTGGGAGGACTCCCGGGGAGAGAGGCTGCTGGCCGTGTCTGAGCGTCACATCCAAGATGAAGATGGCCTGTTCCGCGTGGAAGACACGCTTG-TGGTCAGGAATGTCCCTGCAGAGACCGTGTCCTGCATCGTCCGCAACCCCGTCCT
i micMur3.chr6             I 116 C 0
s proCoq1.NW_012150019v1      158750 272 +   1371726 TCAGTGCTGCG-GCT---------------------------------------------------TCTCCCTGCAGGTCTGGGCTCTGCCCCTGACATCCACATGGAGGAATCTGTGGGAAGCGGAGTCCAGCTTGTGTGCACAGCAAAGGGCTGGTTCCCAGAGCCCCAGGTTTACTGGGAAGACACCTGGGGAGAGAAGTTGCTGACTGTGTCTGAGCGTCACATCCAAGAGGAAGACGGCCTGTTCTACGTGGAAGACACACTTG-TGGTCAGGAATGTCTCTGCAGAGACCGTGTCCTGCGTCATCCACAACCCCATCCT
i proCoq1.NW_012150019v1   C 0 M 1265
s otoGar3.GL873550          15350637 266 -  18854210 TCAGTGCCGTG-ACT---------------------------------------------------TCTCCCTGCAGGTCTGGGCTCTGCCCCCAACATCCACTTGGAGGGATCTGTG------GATGTCCAGCTTGTGTGCACAGCAAAGGGCTGGTTCCCAGAGCCCCAGGTTTATTGGGAAGATCTCTGGGGAGAGGAGTTGCTGACCATGTTTGAGCATCATGTCCAGGATGAAGATGGCTTGTTCTACGTGGAAGATACTCTTG-TGGTCAGGAATGCCTCTGCAGAGAGTGTGTCCTGCATCATCCACAACCCCATCCT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34360844 324 +  94987271 TCAAAGATGTGCGctttctctctctctctctctctctctctctctctctctctctctctctctctctctctctcCAGCTCTAGGATCTTCCCCAAATATCCATGTGGAGGGACTCGGAGAAGGAGAGGTCCAGCTTGTATGCACGTCCCGAGGCTGGTTCCCTGAGCCTGAGGTGCACTGGGAAGGCATCTGGGGAGAAAAGTTGATGAGTTTCTCTGAGAATCATGTGCCAGGTGAAGATGGGCTATTCTATGTGGAAGACACACTGA-TGGTCAGGAATGACAGTGTAGAGACCATTTCCTGCTTCATCTACAGCCATGGCCT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70398795 272 -  72498081 TCAGGGCTGTG-TCT---------------------------------------------------TTCCTATACAGGTCTGGGGTCTGCCCCTTACATCCACATGGAGGCACCTGTTGAAAGTAGAATCCAACTTGTGTGCACTGCAAAAGGCTGGTTCCCAGAACCTCAGGTTTATTGGGAAGATATCACAGGAGAGAAGTTGCTGGCTGCTTCTGAGCATTTAATCCAATATGAAAATGGCCTGTTCTATGTGGAAGCCACTCTTG-TGGTCAGGAATGACTCTGTGGAGAATGTGTCCTGTCTCATCCACAACCCCATCCT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            505550 271 +    935526 TCAGGGCTGTG--CC---------------------------------------------------TCCCTCCGCAGGTGTGGGATCTGCCCCTGACATCCACATGGAGGGACATGTGAAGGACGGAATCCAGCTCCTGTGCACTGCAAGAGGTTGGTACCCAAAGCCTCAGGTTTACTGGGAAGACAAGAGCGGAGAGAAGTTGCTGACAGTCTCTGAGCATCACATCCAAGAGGAAGATGGCCTGTTCTATGTGGAAGGCTTTCTTC-TCCTCAGAGATGCTGCTGTAGAGACTGTGTCTTGCTTCATCCACAACGCCGATCT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=2148522.000000
s hg38.chr6_KI270758v1_alt     50987 463 +     76752 CACTGAGGAGAAGGGGTCGGTCATCAGCCTCCCAGGTCAGTGCTCTGCCTCTAGGACCCACATGCTCAGATCAGCAGGAGAGGTCCCAGGGACTGCACCATAGCACCTCGT--A--TTTTTATCAAGAGACATTATCTATCATATAGCAATATGTATTGAAAGCCATAAAACA-TTTATGACTGGAAATATACGCACTACATTTTACTTGAATAGCTGTT----------------AT--GGCGCCTGCGTTATTTTTGAGTTCTACCTTTCCTTC--TTCTGCATTGATTGTTTTTACT-CACAAGTATTCATTGCATTGTAAAGAAAATAAAGCTATATTTCTTCAACTGAAATGTTTTCCTATGCTGTCTTGTGCTGA--------TTacttctagaaatctatcatatgaagataatcagagatgtagacaactatttgcataatagaatattaattatggccttatttataaatagcagcaaaa--ac---aaccaa
s panTro5.chr6             142754281 463 - 175400573 CACTGAGGAGAAGGGGTCGGTCATCAGCCTCCCAGGTCAGTGCTCTGCCTCTAGGACCCACATGCTCAGATCAGCAGGAGAGGTCCCAGGGACTGCACCACAGCACCTCGT--A--TTTTTATCAAGAGACATTATCTATCATATAGCCATATGTATTGAAAGCCATAAAACA-TTTATGACTGGAAATATACGCACTACATTTTACTTGAATAGCTGTT----------------AT--GGCGCCTCCGTTATTTTTGAGTTCTACCTTTCCTTC--TTCTGCATTGATTGTTTTTACT-CACAAGTATTCATTGCATTGTAAAGAAAATAAAGCTATATTTCTTCAACTGAAATGTTTTCCTATGCTGTCTTGTGCTGA--------TTacttctagaaatctatcatatgaagataatcagagatgtagacaactgtttgcataatagaatattaattatggccttatttataaatagcagcaaaa--ac---aaccaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140902507 463 - 173848474 CACTGAGGAGAAGGGGTCGGTCATCAGCCTCCCAGGTCAGTGCTCTGCCTCTAGGACCCACATGCTCAGATCAGCAGGAGAGGTCCCAGGGACTGCACCACAGCACCTCGT--A--TTTTTATCAAGAGACATTATCTATCATATAGCCATATGTATTGAAAGCCATAAAACA-TTTATGACTGGAAATATACGCACTACATTTTACTTGAATAGCTGTT----------------AT--GGCGCCTCCGTTATTTTTGAGTTCTACCTTTCCTTC--TTCTGCATTGATTGTTTTTACT-CACAAGTATTCATTGCATTGTAAAGAAAATAAAGCTATATTTCTTCAACTGAAATGTTTTCCTATGCTGTCTTGTGCTGA--------TTacttctagaaatctatcatatgaagataatcagagatgtagacaactgtttgcataatagaatattaattatggccttatttataaatagcagcaaaa--ac---aaccaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2420472 463 +   2807050 CACTGAGGAGAAGGGGTCGGTCATCAGCCTCCCAGGTCAGTGCTCTGCCTCTAGGACCCACATGCTCAGATCAGCAGGAGAGGTCCCAGGGACTGCACCACAGCACCTCGT--A--TTTTTATCAAGAGACATTATCTATCATATAGCAATATGTATTGAAAGCCATAAAACA-TTTATGACTGGAAATATATGCACTACATTTTACTTGAATAGCTGTT----------------AT--GGCGCCTCCGTTATTTTTGAGTTCTACCTTTCCTTC--TTCTGCATTGATTGTTTTTACT-CACAAGTATTCATTGCATTGTAAAGAAAATAAAGCTATATTTCTTCAACTGAAATGTTTTCCTATGCTGTCTTGTGCTGA--------TTacttctagaaatctatcatatgaagataatcagagatgtagacaactatttgcataatagaatattaattatggccttatttataaatagcagcaaaa--ac---aaccaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45713059 463 - 122973662 CACTGAGGAGAAGGGGTCGGTCATCAGCCTCCCAGGTCAGTGCTCTGCATGTAGGACCAACATGCTCAGATCAGCAGGAAAGGTCCCAGGGACTGCACCACAGCACCTCAT--A--TTTTTATCAAGAGACATTATCTATCATATAGTAATATGTATTGAAAGCTATAAAACA-TTTATGACTGGAAATATATGCACTACATTTTAATTGAATAGCTGTT----------------AT--GGTGCTTCCGTTATTTTTGAGTTCTACCTTTCCTTC--TTCTGCATTGATTGTTTTTACT-CACAAGTATTCATTGCATTGTAAAGAAAATAAAGCTATATTTCTTCAACTGAAATGTTTTCCCATGCTATCTTGTGCTGA--------TTacttctagaaatctatcatatgaagataatcacagatgcagacaactatttgcataatagaatattaattatggccttacttataaatagcagcaaaa--at---aaccaa
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138674078 436 - 171630274 CAGTGAGGAGAAGGGGGCAATTATCAGCATCCCAGGTCAGTGCTCTGCCTCTAGGACCAACATGCTCAGAACAGCAGGAGTGGTCCCAGGGACTGCACCACAGCACCCCAT--A--TTTTTATCAAGAGACA-TATCTATCATTTAGTAATATGTATCGAAAGCTATAAAACA-TTTATGACTGGATATTTATGCATTCCATTTTAACTGAAGAGCTGTT----------------AC--AGCACTTCCATTATTTCTGAGTTCTACCTTTTCTTC--TTCGGCAT----TGTTTTTACT-CACAAGTATTCACTGCATTGTAAAGAAAATAAAGCTATATTCCTTCGACTGAAATGGCTTCCTATGCTGC------------------------------ATGTAGCATATGAAGATAATCAGAGATGTAGAGAGCTATTTGCATAATAGAATATTAGTTACAGCCTTATTTATAAATAGCAGCAAAA--AC---AATCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            227857 429 +   1154217 CAGTGAGGAGAAGGAGGCAGTTATCAGCATCCCAGGTCAGTGCTCTCTCTCTAGGACCAACATGCTCAGATCAGCAGGAGAGGTCCCAGACACTGCACCACAGCACCCCAT--A--TTTTTATCAAGAGACA-TAGCTATCATTTAGTAATATGTATTGAAAGCTATAAAACA-TTTATGACTGGAAATACATGTACTCCATTTTAACTGAATAGCTGTT----------------AT--GGCACTTCCATTATTTTTGAGTTCTAACTTTTCTTC--TTCTGCAT----TGTTTTTACT-CACAAGTATTCATTGCATTGTAAAGAAAATAAAGCTATATTTCTTCAACTGAAATGGCTTCCTATGCTGT------------------------------ATGTATCATATGAAGATAAT--GAGATGTAGAGAACTATTTGCATAATAGAATACTAGTTACAACCTTATTTATAAATAGCAGCAAAA----------CAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14047755 429 +  15232693 CAGCGAGGAGAAGGGGGCAGTTATCAGCATCCCAGGTCAGTGCTCTGCCTCTAGGACCAACATGCTCAGATCAGCCGGAGAGGTCCCAGGGACTGCACCACAACACCCCAT--A--TTTTTATCAAGAGACA-TATCTATCATTTAGTAATATGTATTGAAAGCTATAAAACA-TTTATGACTGGAAATATATGCATTCCATTTTAACCGAATAGCTGTT----------------AT--AGCACTTCCATTATTTTTGAGTTCTACCTTTTCTTC--TTCTGCAT----TGTTTTTACT-CACGAGTATTCACTGCATTGTGAAGAAAATAAAGCTATATTTCTTCAACTGAAATGGCTTCCTGTGCTGC------------------------------ATGTATCATATGAAGATAAT--GAGATGTAGAGAACTATTTGCATAATAGAATACTAGTTACAGCCTTATTTATAAATAGCAGCAAAA----------ACA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      297323 436 +    446445 CAGTGAGGAGAAGGGGTCAGTTATCAGCATCCCAGGTCAGTGCTCTGCCTCTAGGACCAACATGCTCAGATCAGCAGGAGAGGTCCCAGGGACTGCACCACAGCACCCCAT--A--TTTTTATCAAGAGACA-TATCTATCATTTAGTAATATGTATTGAAAGCTATCGAACA-TTTATGACTGGAAATATATGCACTCCATTTTAACTGAATAGCTGTT----------------AG--AGCACTTCCTTTATTTTTGTGTTCTACATTGTCTTC--TTCTGCATTGACTGTTTTTACT-CACAAGTATTCATTGCATTGTAAAGAAAATAGAGCTATATTTCTTCAACTGAAATGGCTTCCTATGCTGC------------------------------atgtatcatatgaagataatcagagatgtagagaactatttgcataatagaatattagttgcagccttatttataaatagcagcaaaa--a-------caa
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4489119 466 + 123392446 CTCGGAGGAGAGGAGCTCGGCCATCGCCGTCCCAGGTCAGTGCTCTGCCCCTAGGGTCGGCATGCTCAGGCCAGAGCGGGAGGCTCC--GCGCCGCACCGTGGCACCTCAA--C--TTTTTATCAAGAAAAA-CATCTAACATTTAGCAATATATATTAAAAGCTATAGGACA-TTTATGATCGGAAATATAGGCACTACATTTTGATTGAATAGCTGTT---------------AAT--GGCACTTCAGTTGCTTTCGAATGCCACCTTTTGTTC--TACTGCGTTGATTCTTTCCACT-CACAAGTATGCAGCACATGGTAAAGAAAACGAAACTGTACTT---CAAGTGGCATTTTTTCCTGTGCTGTGTTGTGCTTAGaataaatttacttctagaaatttattataagaagataatcagagatagagacaactatttatataatagaatattaattataccctcatatataaataacaagaaaa--gc---aaccaa
i micMur3.chr6             C 0 I 146
s otoGar3.GL873550          15350903 450 -  18854210 CACTGAGGAGAAGAGGTCAGTCATCGACATCCCAGGTCAGTGCTCTGCCTCTAGGATCTA-ATGCTTGGGTCAGCAGGGGA-----------CTGCACCATAGCATCTCAAGCT--TCTTTACCAAAAAAAA--ATCTAACATTTAGTAAGATGCATTAAAAGCTATAAAACATTTTATGACTGGAAATATGTGAACCACATTTTGATTGAATAGTTGTT---------------AAT--A--ACTTTAGTTATTTTTGAGTTCTAGCTTTTCTTC--TTCTGCACGGATTCTTTTTACT-CA-AAGTATGCATCACATTCTAAAGAAAATGAAACTATTCTCCTGCATCTGAAATTATTTCCCATGCTATATTGTGCTGA--------TTTcttgtaaaactctactatatgaagctaatcagagatggaggcaatgatttacatgatagaatattaattatagcctcatttataaataacaacaaaa--ac---aaccca
i otoGar3.GL873550         C 0 I 2
s mm10.chr17                34361168 382 +  94987271 CAGAGAGACCCAGGAGGCCACCATCGCTCTGTCAGGTCAGTGCTTTGGCTCAGGCACCA-------CAGATC----TCAGGGGTTCCAGGGGCTGCTCAGCAGCAACTCTT--C--TTTTTCTT--TAATCA-TATTTAT------GTAATAT--ATTCAAATTTATA-AACA-TTC-----------------------------------------------------------AT--GGTATTTCAGTAATCTTCAAGTT-TATATTTTACTC--CACTGTGT----TAATTTTGCTACACAGATGTTAAACACATTGGAGATATAATAAAA--ATAGTCCTTTAACTGAGACGTCTTCTTGTGGTGT-----GCCAG--------TTGCTTCCAGGAGCCAATCATGTGC--TTAGTCAGA-----ATGGGATGGTTTCTTTGACAGCTTCTTAGTTATAGTCTTGTCAATAAGTAGTAACAAAA--ACAATAATCAA
i mm10.chr17               C 0 I 1
s canFam3.chr12             70399067 464 -  72498081 CAATGAGAAGAAGAGCTCAGTCATCTCCATTCCAGGTCAGAGCTCTGTCTCTAGGACCAGTGTATTCAGATTAGCAGGAAAGTCTCAAAGGACAGTTCCATAGCACCTAAT--ATGTTTTTATCAAGGAAAA-TATCTAAAATTTAGTAATATGTATTAAAAAGTATAAACTA-TTTATGACTGGAAATATAT--ACTATATTTTTATTAAATAGTGATT----------------ATTAATTTGTTTAGTTATTTTCAAATTCCACCTTTTCTTC-TTTCTGAATTAATTTTCTTTACT-CACA--TATACATTACATGATAAAGAGAATAAAACTATATTCTTTCAATCAAAATGCTTTCCTGTACCACATTGTGCCAA--------TTacttttaagaacctgtcatgtgaagataatcagagatggagacagcta-ttaaataatagtatcttacttatagcctcatttataaatagcaataaaacaac---agttaa
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            505821 471 +    935526 CGAGGAAGAGAAGGGATCGGAAATCTCCATCCCAGGTTAGTGCTTCATCAGCTGTGCCAACGTGCTCAGCTTAACTGGAAGTGTTCCAGGGACTGTCCTGTAACG---AGA--A--TTTTTATCAAGGAAAA-ACTGCAATGTTTAGTATTAGATATTAAAAGCTATACAGTA-TTTGCAACTGGGAATATATAGAGCAAATTTTGATTGAATGGTATTTCAGTGATTTTCGATTAAT--GGTATTTCAGTTATTTTCAAGTTCTACCTTTTCTCTCTTTGTGTATTGATTTTCTTAACT-CACAAGTATGCATCGTGTTGTAAAGAAAA-----CTATGTTCTTTCAGATGAAATGTTTTCCTATATTGTATTGTGATGA--------TTacttctaggaattgatcatacagaaataatcagagatggagtcaagaaattatgtaataaaatcttaatgacagccttatttataaataacaacaaaa---c---tactaa
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=377087.000000
s hg38.chr6_KI270758v1_alt     51450 124 +     76752 ccccccaata-------caacag-tacagtgtggaa--tct-tgtcttactatacattatagcattaa-t--aaaa-agatattttt-aaataattttaatggttg-aaaaaatcctcatgatgcactattcaatgataaa
s panTro5.chr6             142754744 127 - 175400573 ccccccaaaa-------caacag-tacagtgtggaa--tct-tgtcttactatacattatagcattaa-tgaaaaa-ggatattttt-aaataattttaatgtttgaaaaaaatcctcatgatgcactattcaatgataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140902970 127 - 173848474 ccccccaata-------caacag-tacagtgtggaa--tct-tgtcttactatacattatagcattaa-tgaaaaa-ggatattttt-aaataattttaatgtttgaaaaaaatcctcatgatgcactattcaatgataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2420935 126 +   2807050 ccccccaata-------caacag-tacagtgtggaa--tct-tgtcttactatacattatagcattaa-taaaaaa-ggatattttt-aaataattttaatggttg-aaaaaatcctcatgatgcactattcaataataaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45713522 126 - 122973662 ccccccaata-------caacag-tacagtgtggaa--tct-tgtcttactatacattgtagcattaa-tgaaaaa-ggatattttt-aaataattttaatggttg-aaaaatccctcatgatgcactattcaatgataaa
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138674514 125 - 171630274 CCCCCCAATA-------CAACAG-TACGGTGTTGAG--GCT-TGTGTTA-TATACTTTATAGAATTGatttaaaaatgta---ttttaaaataattttaatGGTTG-AAAAAATCCTCATGGCATACTGTTCAACGATAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            228286 123 +   1154217 CCCCCCAATA-------CAACAG-TACAGTGTTGAG--TCC-TGTGTTA-TATACTTTCTAGAATTGA-TGaaaaaaata---tttt-aaataattttaatGGTTG-AAAAAATCCTCATGATGTACTATTCAATGATAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048184 126 +  15232693 ACCCCCAATA-------CAACAG-TACAGTGTTGAG--TCT-TGTGTTA-TATACTTTATAGAATTGA-TGAAAAATATATATTTTT-AAATAATTTTAATGGTTG-AAAAAATCTTCATGATGTACTGTTCAGTGATAAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      297759 125 +    446445 ccccccaata-------caacag-tacagtgttgag--tct-tgtgtta-tatactttacaggattga-tgaaaaa-atatattttt-aaataattttaatggttg-aaaaaatcctcatgaaatactgttcaatgataaa
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15351355  52 -  18854210 aaatccagta-------caacag-tggagtgTGAGG--TTTCTATCTTA---------------TCTA-TAAACAG-AC--------------------------------------------------------------
i otoGar3.GL873550         I 2 C 0
s mm10.chr17                34361551 116 +  94987271 ACACACAATA-------CAATAGTTACAGGTATGTT--TCC-TATGTTGTTAGAAGTTAGAGCAGAGA-GGGAGAG-TTGCACT----TAATGATTCTTAGAGCCC-AGAAAGTCCTCATG--------CTCAGTGATAAA
i mm10.chr17               I 1 I 500
s canFam3.chr12             70399533 126 -  72498081 aggcacaata-------caatag-tggagtgttaagtatct-tatgtgactataaattatagcattga-tgaaaca-tgctattttc-aaatgattttaatggttg-aaaaaatcctcatgaCGGACTATTTA--TATAAA
i canFam3.chr12            I 2 C 0
s dasNov3.JH569424            506292 127 +    935526 ------aaaattagcaccagcag-ttgagtgttaaatgtct-tatgt-actataaattataccattgt-tgaaaa--tgatattttc-aaataattttagtggtta-aaaaaattctcatgatatcttattcaatgataaa
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4489585 146 + 123392446 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=72713.000000
s hg38.chr6_KI270758v1_alt     51574 21 +     76752 CATGACATCTACCTATAAATT
s panTro5.chr6             142754871 21 - 175400573 CATGACATCTACCTATAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903097 21 - 173848474 CATGACATCTACCTATAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421061 21 +   2807050 CATGACATCTACCTATAAATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45713648 21 - 122973662 CATGACATCTACCTATAAATT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138674639 21 - 171630274 CATGACATCTATCTGTAAATA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            228409 21 +   1154217 CATGACATCTATCTATAAATA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048310 21 +  15232693 CATGACATCTACATATAAATA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      297884 21 +    446445 CATGACATCTACCTATAAATA
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70399659 21 -  72498081 GATTACatctatctattacct
i canFam3.chr12            C 0 I 27
s dasNov3.JH569424            506419 17 +    935526 GATTATATCTATCTATA----
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34361667 500 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4489585 146 + 123392446 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15351407  0 -  18854210 C

a score=11794.000000
s hg38.chr6_KI270758v1_alt     51595 3 +     76752 GAC
s panTro5.chr6             142754892 3 - 175400573 GAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903118 3 - 173848474 GAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421082 3 +   2807050 GAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45713669 3 - 122973662 GAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138674660 3 - 171630274 GGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            228430 3 +   1154217 GGC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048331 3 +  15232693 GGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      297905 3 +    446445 GAC
i aotNan1.NW_018508875v1   C 0 C 0
s mm10.chr17                34362167 3 +  94987271 gac
i mm10.chr17               I 500 C 0
s canFam3.chr12             70399707 3 -  72498081 AAC
i canFam3.chr12            I 27 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4489585 146 + 123392446 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15351407 0 -  18854210 C
e dasNov3.JH569424            506436 0 +    935526 C

a score=579577.000000
s hg38.chr6_KI270758v1_alt     51598 111 +     76752 ATTTCCAATCACATAAAAGTTACTGGCCTTAAATAACTTATAACTGCACTAAAACTTTCAGGATACCCTCCACATTTGGATATAAGTATACAGTTATTC------ATATA---AATGGAT
s panTro5.chr6             142754895 111 - 175400573 ATTTCCAATCACATAAAAGTTATTGGCCTTAAATAACTTATAACTGCACTAAAACTTTCAGGATACCCTCCACATTTGGATATAAGTATACAGTTATTC------ATATA---AATGGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903121 111 - 173848474 ATTTCCAATCACATAAAAGTTATTGGCCTTAAATAACTTATAACTGCACTAAAACTTTCAGGATACCCTCCACATTTGGATATAAGTATACAGTTATTC------ATATA---AATGGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421085 110 +   2807050 ATTTCCAATCACATAAAAGTTATTGGCCTTAAATAACTTATAACTGCACTAAAACTTTCAGGATACCCTCCACATTTGGATATAAGTATACAGTTATTC------ATAT----AATGGAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45713672 111 - 122973662 ATTTCCAATCACATAAAAATTATTGGCCTTAAATAACTTATAACTGCACTAAAACTTTCAGGATACCCTCCTCATTTGGATATAAGTATACAGTTATTC------ATATA---AATGGAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138674663 110 - 171630274 ATTTCCAATCACA-TAAACTTGTTGGTTTTAAATAACTTATAACTGCACTACAAGTTTCAGGATACCCCCCACATTTGGATATAAGTATACAGTTATTC------ATACA---AATGGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            228433 111 +   1154217 ATTTCCAATCACATTAAAGTTGTTGGCTTTAAATAACTTATAACTGCACTACAACTTTCACGATACCCTCCACATTTGGATGTAAGTATACAGTTATTC------ATATA---AACGGAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048334 111 +  15232693 ATTTCCAATCACATAAAAGTTGTTGGCTTTAAGTATCTTATAACTGCACTACAACTTTCAGGATACCCTCCACATTTGAATATAAGTATACAGTTATTC------ATATA---AATGGAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      297908 111 +    446445 ATTTATAATCACATAAAAGTTATTGGCTTTAAATAACTTATAACTGCACTAAAACTTTCAGGATACCCTCCACATTTGGATATAAGCATACAGTTATTC------ATATA---AATGGAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4489731 111 + 123392446 ATTTCCAGTCATATAAAAATTATCAGCTTTAAGTaacttataactgcactaagacttttgggatgtcctCTCTATTTGGATACAAGAATATAGTTGTTC------ATATA---AATGGAT
i micMur3.chr6             I 146 I 228
s otoGar3.GL873550          15351407  91 -  18854210 ATTTCCAATCATATAAAAATTATGGGCTTTGAATAACTTATAACTGCACTAAAACTTTTGGGATG-----------------AAAGTATATA---GTTT------ATATA---AATGGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34362170 102 +  94987271 tTTGCTGCTTATGTGAGGAGAATTGCCTTTAAACATTTTA-AATTGAACTGAGAATTTTAGGACA--CTCTGTGTTTGGATGTA---------TTGCTG------GTGTAAGCAAAGGAT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70399710 117 -  72498081 ATTTCCAATCACATAAGGAATAATGGCTTTAAATAACTTAAAACTGCACTAAGACTTTTGGTATATCTTCTATATTTAGATATAGAGATTTAGTTATTCTTACTTATATA---AATGGAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            506436 102 +    935526 TCTACCTATCA--------TTCTAGGCTTTAAATTACTTAAAACTGCACTAAGACTTTTGAGACATCTTATGTATTTAGGTATAAGTATATAATTATT-------ATATA---AATGGAT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=528851.000000
s hg38.chr6_KI270758v1_alt     51709 160 +     76752 AGATTAAAAAaactttaaagttaatgt---tacattttaattttaaATGAAGCTGATTGTATAT----------TACATATA-------------ATTCGTCTCTCTAC---------------------TTTGTAATT-TAGGTGAT--AC-TGTTTATGTCCATATAATTTTGTACTTTCTGTGTACCTATAAAA---GGAACATATGTTAT
s panTro5.chr6             142755006 161 - 175400573 AGATTAAAAaaactttaaagttaatgt---tacattttaattttaaatGAAGCTGATTGTATAT----------TACATATA-------------ATTCGTCTCTCTAC---------------------TTTGTAATTATAGGTGAT--AC-TGTTTATGTCCATATAATTTTGTACTTTCTGTGTATCTATAAAA---GGAACATATGTTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903232 161 - 173848474 AGATTAAAAaaactttaaagttaatgt---tacattttaattttaaatGAAGCTGATTGTATAT----------TACATATA-------------ATTCGTCTCTCTAC---------------------TTTGTAATTATAGGTGAT--AC-TGTTTATGTCCATATAATTTTGTACTTTCTGTGTATCTATAAAA---GGAACATATGTTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421195 161 +   2807050 AGATTAAAAAaactttaaagttaatgt---tacattttaattttaaatGAAGCTGATTGTATAT----------TACATATA-------------ATTTGTCTCTCTAC---------------------TTTGTAATTATAGGTGAT--AC-TGTTTATGTCCATATAACTTTGTACTTTCTGTGTATCTATAAAA---GGAACATATGTTAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45713783 161 - 122973662 AGATTTAAAaaactttaaagttaatgt---tatattttaattttaaatGAAGCTGATTGTATAT----------TACTTATA-------------ATTAGTCTCCCCAC---------------------TTTGTAATTATAGGTGAT--AC-TGTTTATGTCCATATAATTTTGTACTTTCTGTGTATCTATAAAA---GGAACATATGTTAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138674773 154 - 171630274 GGAT--AAAAAACTTTAAAGTAAATGT---TATATTTTAATTTTAAATGAAGCTGATTGTATAT----------GATATATA-----------------GTCTCTCCAT---------------------ATTGTAATTATAGGTGAT--AT-AGCTTGTGTCCATATAA-TTTGTACTTTCTGTATATCTATAAAA---GGAACATATGTTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            228544 155 +   1154217 AGAT--AAAATACTTTAAAGTAAATGT---TATATTTTAATTTTAAATGAAGCTGATTGTATAT----------TATATATA-----------------GTCTCTCCAT---------------------TTTGTAATTATAAGTGAT--AT-AGTTTATGTCCATATAATTTTGTATTTTCTGTATATCTATAAAA---GGAACATATATTAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048445 154 +  15232693 AGAT--AAAAAACTTTAAAGT-AATGT---TATATTTTAATTTTAAATGAAGCTGATTGTATAT----------TATACATA-----------------GTCTCTCCAT---------------------TTTGTAATTATAGGTGAT--AT-AGTTTATGTCCATATAATTTTGTACTTTCTGTATATCTATAAAA---GGAACATATGTTAT
i cebCap1.NW_016107339v1   C 0 I 14
s aotNan1.NW_018508875v1      298019 151 +    446445 AGATAAAAAAAACTTCAAAGTAAATGT---TATATTTTAATTTTAAATGAAGCTGATTGTATAT--------------TATA-----------------GTCTCCCCAT---------------------TTTGTAATTATAGGTGAT--AT-AGTTTATGTCCATATAATTTTGTACTTTCTGTATATCTATAAAA---GGAAC--ATGTTAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15351498 183 -  18854210 AGAT----AAAAACTTAAAGT--ATGT---TATATTTTAATGTCAAAAGAAGCTGattatatattttatatttataaatata-------------attaGTCTGTATACCATAAACACAATCTCAGTTTGTTGGTAATGACCGGTGATTGAT-TGTCTGTGTAT-TATGATTTTGTACTTCCTATGTAC----AAAA---AGACACTGTATTGT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34362272 141 +  94987271 GCAT--TAAAGAGTTAAAAGTAAATGT---TGTGTT------------AATGTTAATTCAATAT----------CATACA----------------------GCCCCAG---------------------TTTAGAATACTAAGTAAT--ACTTGTTTATGACTTTAT-ATTTCATACTTAGCACTTATTTATAAAAAATAATACATATGTTTT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70399827 169 -  72498081 ATAT--TAAATAATTTAAAGAAAACAT---CACATGTGAATGTTAAAAGCAGCTGAATATATAT----------TATATAAATGCTTTATATGTGTTTTATCTTTCAA----------------------TTTGGAATTATAGGTGAT-AAT-TACCTATGTCCATATATTTTTATAGCTTTTATGCACTTATAAGA------ATATGTATCAG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            506538 119 +    935526 --ATAGGGAACAATTGAAAGGAAATATATATATGTTTTAAC--------------------TAT----------------TA------------------------------------------------AGTGGAATTATAGATGAT-GAT-TACCTTTGTCCATAT-ATTTTGTGCTTTCTGTTT--TTATAAAA---TGGA-ATGTGTTAT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4489842 228 + 123392446 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=16692.000000
s hg38.chr6_KI270758v1_alt     51869 6 +     76752 TTTCAT-
s panTro5.chr6             142755167 6 - 175400573 TTTCAT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903393 6 - 173848474 TTTCAT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421356 6 +   2807050 TTTCAT-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45713944 6 - 122973662 TTTCAT-
i nomLeu3.chr1a            C 0 I 1
s calJac3.chr4             138674927 6 - 171630274 TTTCAT-
i calJac3.chr4             C 0 I 1
s saiBol1.JH378315            228699 6 +   1154217 TTTCAT-
i saiBol1.JH378315         C 0 I 1
s aotNan1.NW_018508875v1      298170 6 +    446445 TTTCAC-
i aotNan1.NW_018508875v1   C 0 I 1
s otoGar3.GL873550          15351681 6 -  18854210 TTTTAT-
i otoGar3.GL873550         C 0 I 1
s mm10.chr17                34362413 6 +  94987271 ACTAGT-
i mm10.chr17               C 0 C 0
s canFam3.chr12             70399996 6 -  72498081 TTTGAC-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            506657 6 +    935526 -TTTATA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4489842 228 + 123392446 I
e cebCap1.NW_016107339v1    14048599 14 +  15232693 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=80759.000000
s hg38.chr6_KI270758v1_alt     51875 23 +     76752 GCTGATAGCTAAGTATTTATGCT
s panTro5.chr6             142755173 23 - 175400573 GCTGATAGCTAAGTATTTATGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903399 23 - 173848474 GCTGATAGCTAAGTATTTATGCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421362 23 +   2807050 GCTGATAGCTAAGTATTTATGCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45713951 23 - 122973662 GCTGATAGCTAAGTATTTATGCT
i nomLeu3.chr1a            I 1 C 0
s calJac3.chr4             138674934 23 - 171630274 ACTGATAGTTAAGTATTTATGCT
i calJac3.chr4             I 1 C 0
s saiBol1.JH378315            228706 23 +   1154217 ACTGATAGTTAAGTATTTATGCC
i saiBol1.JH378315         I 1 C 0
s cebCap1.NW_016107339v1    14048613 23 +  15232693 ACTGATAGTTAAGTATTTGTGCT
i cebCap1.NW_016107339v1   I 14 C 0
s aotNan1.NW_018508875v1      298177 23 +    446445 ACTGATAGTTAAGTATTTATGCT
i aotNan1.NW_018508875v1   I 1 C 0
s otoGar3.GL873550          15351688 23 -  18854210 ACTTAAACTTAAATATTTATGTG
i otoGar3.GL873550         I 1 C 0
s mm10.chr17                34362419  5 +  94987271 GCTTA------------------
i mm10.chr17               C 0 C 0
s canFam3.chr12             70400002 21 -  72498081 -AAGATA-TTAAATATCAATATG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            506663 23 +    935526 AGTGATAGTTAAATATCTATATG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4489842 228 + 123392446 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=358891.000000
s hg38.chr6_KI270758v1_alt     51898 80 +     76752 GTAAATATCAGAAGAAACCAACAGAATCATGGGGAGATAGAAGTGACAGCA-TTTTTGTTGTGCAGAGAAAAGG-AAAAAAA
s panTro5.chr6             142755196 80 - 175400573 GTAAATATCAGAAGAAACCAACAGAATCATGGGGAGATAGAAGTGACAGCA-TTTTTGTTGTGCAGAGAAAAGG-AAAAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903422 80 - 173848474 GTAAATATCAGAAGAAACCAACAGAATCATGGGGAGATAGAAGTGACAGCA-TTTTTGTTGTGCAGAGAAAAGG-AAAAAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421385 80 +   2807050 GTAAATATCAGAAGAAACCAACAGAATCATGGGGAGATAGAAGTGACAGCA-TTTTTGTTGTGCAGAGAAAAGG-AAAAAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45713974 81 - 122973662 GTAAATATCAGAAGAAACCAACAGAATCACGGGGAGATAGAAGTGACAGCA-TTTTTGTTGTGCAGAAAAAAGGAAAAAAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138674957 77 - 171630274 GTAAATATCAAAATAAACCAACAGAATCATGGGGAGACGGAAGTGAGAGCG--TTTTGTTGTGCAGAGAAAAG---AAAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            228729 79 +   1154217 ATAAATATCAGAGGAAACCAACAGAATCATGGAGAGATAGAAGTGAGAGCA-TTTTTGTTGTGCAGAGAAAAG--AAAAAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048636 79 +  15232693 GTAAATATCAGAAGAAACCAACAGAATCATGGGGAGATAGAAGTGAGAGCATTTTTTGTTGTGCAGAAAAAGA---AAAAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298200 81 +    446445 GTAAATATCAGAATAAACCAACAGAATCATGGGGAAATAGAAATGAGAGGA-TTTTTGTTGTGCAGAGAAAAGAAAAAAAAA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4490070 80 + 123392446 GTAAATATCAGCAGAAACAAACAAAATCTTGGGAAGATAGAAGTGAGAGCA-TTTTTGTTGTGCAGAGAAAAGA-AAAAAAA
i micMur3.chr6             I 228 I 105
s otoGar3.GL873550          15351711 81 -  18854210 GTAAATATAAATAGAAATGAACAGAATTACAGGAAACTAGAAGGGAGAGTATTTTTTGTTGTACACAGAAAAGA-AAAAACA
i otoGar3.GL873550         C 0 I 1
s mm10.chr17                34362424 65 +  94987271 ----ATATCAGCAGAAACAAAATGGATTG-ACGGTGATAGAACCGA---CC-TTTTTGTTG-----AGAAAAAG-TAAGA--
i mm10.chr17               C 0 C 0
s canFam3.chr12             70400023 75 -  72498081 TTCAATATCAGCAGAAATAAACT--ATGGTGGGGTAATAGAACTGAGAG-G-CTTTTATTG--GAAATAAAAGG-AAAAACA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            506686 60 +    935526 TTAAATATGAGTAGAAACAAATAGAATCATGGGGTGGTAGAACTG---------------------AGAAAAGG-AAAAACA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=210279.000000
s hg38.chr6_KI270758v1_alt     51978 50 +     76752 GCTGTATC-ATTGGGTAATCTGTGGGAAAGAATCAGTATTTTTCTGCATTT
s panTro5.chr6             142755276 50 - 175400573 GCTGTATC-ATTGGGTAATCTGTGGGAAAGAATCAGTATTTTTCTGCATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903502 50 - 173848474 GCTGTATC-ATTGGGTAATCTGTGGGAAAGAATCAGTATTTTTCTGCATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421465 50 +   2807050 GCTGTATC-ATTGGGTAATCTGTGGGAAAGAATCAGTATTTTTCTGCATTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714055 50 - 122973662 GCTATATC-ATTGGGTACTCTGTGGGAAAGAATCAGTATTTTTCTGCATTT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675034 47 - 171630274 GCTGTGTC-ATTGGGTAATCTGTGGGAA--AATCCATA-TTTTCTGCTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            228808 50 +   1154217 GCTGTATC-ATTGCATAATCTGTGGGAAATAATCCATATTTTTCTGCTTTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048715 50 +  15232693 GCTGTATC-ATTGGGTAATCAGCGGGAAATAATCCGTATGTTTCTGCTTTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298281 50 +    446445 GCTGTATC-ATTGGGTAATCTGTGGGAAATAATCCACATTTTTCTGCTTTT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15351793 50 -  18854210 CCTGTATC-ACTGGGTGATCCAAGAGAAACAATGAATATTTTTCTGCATTG
i otoGar3.GL873550         I 1 C 0
s mm10.chr17                34362489 46 +  94987271 TCTATGTC-ACCAGGTGGTCCATGGGAA-GAAT---TAATTTTCTGTTTTT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70400098 46 -  72498081 GCTGGATC-ACTAGGTGATCCATGGGAAGGAAT----ATTTTTCTGTGTTT
i canFam3.chr12            C 0 I 182
s dasNov3.JH569424            506746 46 +    935526 GCTGTGACAACCAGGTGACCCGTGGGAACGAATC-----GTTTTTGCATTT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490150 105 + 123392446 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=245885.000000
s hg38.chr6_KI270758v1_alt     52028  73 +     76752 C---TTTTTTTAATGAATTGAGCTTCCCTATATAATGTATAAATTGCTTTCTTTTT------------------------TAA---------------------------------------AAAACAGTTTCTCTC-CT
s panTro5.chr6             142755326  74 - 175400573 CA--TTTTTTTAATGAATTGAGCTTCCCTATATAATGTATAAATTGCTTTCTTTTT------------------------TAA---------------------------------------AAAATAGTTTCTCTC-CT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903552  74 - 173848474 CA--TTTTTTTAATGAATTGAGCTTCCCTATATAATGTATAAATTGCTTTCTTTTT------------------------TAA---------------------------------------AAAATAGTTTCTCTC-CT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421515  70 +   2807050 CA--TTTTTTTAATGAATTGAGCTTCCCTATATAATGTATAAATTG----CTTTTT------------------------TAA---------------------------------------AAAATAGTTTCTCTC-CT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714105  73 - 122973662 AA--TTTTTTT-ATGAATTGAGCTTTCCTATATGATGTATAAATTGCTTTCTTTTT------------------------TAA---------------------------------------AAAATAGTTTCTCTC-CT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675081  76 - 171630274 CATGTTTTTTCTATGAATTGAGCTTTACTATGTAACGTATAACTTGCTTTGTTTTT------------------------TAA---------------------------------------AAGATAGTTTCTCTC-CT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            228858  81 +   1154217 CATGTTTTTTCTATAAATTGAGTGTTCCTATATAACATATAACTTGCTTTCTTTTT-------------------AAAAAAAA---------------------------------------AAAAAAGTTTCTCTC-CG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048765  76 +  15232693 CATATTTTTTCTATGAATTGAACTTTCCTATATAACATATAACTTGCTTTCTTTTT------------------------TAA---------------------------------------AAAGTAGTTTCTCTC-CT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298331  77 +    446445 CATGTTTTTTCTATGAATTGAGCTTTCCTATGTAACGTATAGATTGCTTTCTTTTT------------------------AAA---------------------------------------AAATCAGTTTCTCTCTCT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15351843 139 -  18854210 CCTATTTTTCTTATGAACTGAGCTTTCCTATAAAATGTAGAAGTTGtttttttttttctttctttttttttATTGAATGGTAACTATGTACATTAATGCACTTCTGGTTGCTTTTTTTTTTTGAAATAGTTTCTCTC-CA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34362535  73 +  94987271 CATACTTTTTAAATAAATTGAGTTCTTGAATAAAATGTGAAGCTCACCTTTATTTC------------------------TGG---------------------------------------AA---AGTTTCTTTA-CT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70400326  69 -  72498081 ---aTTTTTTTTATGAACTGAGCTTATCAATAAAATTTAGAACTTTTTTTCTTTTT------------------------AAA-------------------------------------------TATTTTCTCTC-CT
i canFam3.chr12            I 182 C 0
s dasNov3.JH569424            506792  72 +    935526 --CAGTTTTGTAATGAATTGAGCTTTCCAACCCAATGGTGGCGTGGGGTACTTTTT------------------------TGA---------------------------------------AG--TAGCTTTTCTC-CT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490150 105 + 123392446 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=520894.000000
s hg38.chr6_KI270758v1_alt     52101 76 +     76752 TTCCCTTACACCAAATTCCTTAATATGTTATTCTTGTTCTTTT--TCCAGAGAAACTCCAGACTGAGCTGGGTAAGTA
s panTro5.chr6             142755400 76 - 175400573 TTCCCTTACACCAAATTCCTTAATATGTTATTCTTTTTCTTTT--TCCAGAGAAACTCCAGACTGAGCTGGGTAAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903626 76 - 173848474 TTCCCTTACACCAAATTCCTTAATATGTTATTCTTTTTCTTTT--TCCAGAGAAACTCCAGACTGAGCTGGGTAAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421585 76 +   2807050 TTCCCTTACACCAAATTCCTTAATATGTTATTCTTGTTCTTTT--TCCAGAGAAACTCCAGACTGAGCTGGGTAAGTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714178 76 - 122973662 TTCCCTTACACCAAATTCCTTAATATGTTATTCTTGTTCTTTT--TCCAGAGAAACTGCAGACTGAGCTGGGTAAGTA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675157 76 - 171630274 TTCCCTTACACCAAATTCCTTAATATGTTATACTTGTTCTTTT--TCCAGAGAAACTTCAGACTGAGCTGGGTAAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            228939 76 +   1154217 TTCCCTTACACCAAATTCCTTAATATGTTATTCTTGTTCTTTT--TCCAGAGAAACTTCAGGCTGAGCTGGGTAAGTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048841 76 +  15232693 TTCCTTTACACCAAATTCCTTAATACGTTATTCTTGTTCTTTT--TCCAGAGAAACTCCAGACTGAGCTGGGTAAGTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298408 76 +    446445 TCCCCTTACACCAAATTCCTTAATATGTTATTCTTGTTCTTTT--TCCAGAGAAACTCCAGACTGAGCTGGGTAAGTA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4490255 73 + 123392446 TTCTCTTAGACCAAATTCCTTAATGTGTGATTC---TCCTTTT--TCCAGAGAAACTGCAGACTGAGCTGGGTGAGTA
i micMur3.chr6             I 105 I 670
s otoGar3.GL873550          15351982 73 -  18854210 TTCCTTTAGATCAAATTCCTTAATATGTGATTC---TCCTTTT--TCCAGAGAAACTCCAGACTGAGCTGGGTAAGTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34362608 78 +  94987271 TTCCTTTAGACCAAATCCCTTAAGATATTTTTCTTTTTTTTTTTCTCCAGAGAGGCTCCAGACCGAACTGGGTGAGTG
i mm10.chr17               C 0 C 0
s canFam3.chr12             70400395 78 -  72498081 TTCCCTTAGATCAAATTCCTTAATATATTATTCTTGTTTTTTTTTTCCAGAGAAATTCCAGAATGAGCTAGGTAAGTA
i canFam3.chr12            C 0 I 6
s dasNov3.JH569424            506864 75 +    935526 -TTCCCGATACCAGATTCCTTCACACGTTATTCTCTTTCTTTT--TCCAGAGAAACTCCGGACCGAGCTGGGTGAGTA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=5217.000000
s hg38.chr6_KI270758v1_alt     52177 7 +     76752 ---CGAGGTG
s panTro5.chr6             142755476 7 - 175400573 ---CGAGGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903702 7 - 173848474 ---CGAGGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421661 7 +   2807050 ---CGAGGTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714254 7 - 122973662 ---CGAGGTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675233 7 - 171630274 ---TGAAGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229015 6 +   1154217 ---TGAA-TG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048917 7 +  15232693 ---TGAAGTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298484 7 +    446445 ---TGAAGTG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15352055 6 -  18854210 ---GGCCGT-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34362686 7 +  94987271 ---GGACCTG
i mm10.chr17               C 0 C 0
s canFam3.chr12             70400479 7 -  72498081 ---GGATGTG
i canFam3.chr12            I 6 C 0
s dasNov3.JH569424            506939 7 +    935526 GCACGGG---
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e proCoq1.NW_012150019v1      159022 1265 +   1371726 M
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=168893.000000
s hg38.chr6_KI270758v1_alt     52184 40 +     76752 CTGGCACACACCTGTGGAGG-GAGCCTCTGCCCTCCCCAGC
s panTro5.chr6             142755483 40 - 175400573 GTGGCACACACCTGTGGAGG-GAGCCTCTGCCCTCCCCAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903709 40 - 173848474 GTGGCACACACCTGTGGAGG-GAGCCTCTGCCCTCCCCAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421668 40 +   2807050 CTGGCACACACCTGTGGAGG-GAGCCTCTGCCCTCCCCAGC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714261 40 - 122973662 CTGGCACACACCTGCGGAGG-GAGCCTCTGCCCTCCCCAGC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675240 40 - 171630274 CTGACACACACCTGTGCGGG-GAGCTTCTGCCCTCTCCAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229021 40 +   1154217 CCGACACACACCTGTGCAGG-GAGCTTTTGCCCTCCCCAGC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048924 40 +  15232693 CTGACACACACCTGTGCAGG-GAGCTTCTGCCCTCCCCAGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298491 40 +    446445 CTGACACACACCTGTGCAGG-GAGCTTCTGCCCTCCCCAGC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      160289 40 +   1371726 CTGGCACGCGCCTGTGCGGG-GAGCCTCTGCCCTCCTCAGC
i proCoq1.NW_012150019v1   M 1265 I 28
s otoGar3.GL873550          15352061 37 -  18854210 CTGGCATGCACTTGTGCAGG-GAGCCTCTGC---CCTCAGC
i otoGar3.GL873550         C 0 I 4
s mm10.chr17                34362693 23 +  94987271 --CGTGCACGCCCATGCATG-AGGGC---------------
i mm10.chr17               C 0 C 0
s canFam3.chr12             70400486 31 -  72498081 CTAGTATA---------GAG-GAGACCCTGCTTGCCCCAAA
i canFam3.chr12            C 0 I 16
s dasNov3.JH569424            506946 36 +    935526 CGGGCGCGCACA-GCGCGGGCGGGTCTCTGCTCTCGC----
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=88256.000000
s hg38.chr6_KI270758v1_alt     52224 33 +     76752 AGAGGGAG-----G--GGAGCTAC------------CACGAGACC---ATGTGAC
s panTro5.chr6             142755523 33 - 175400573 AGAGGGAG-----G--GGAGCTAC------------CACGAGACC---ATGTGAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903749 33 - 173848474 AGAGGGAG-----G--GGAGCTAC------------CACGAGACC---ATGTGAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421708 33 +   2807050 AGAGGGAG-----G--GGAGCTAC------------CACGAGACC---ATGTGAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714301 33 - 122973662 AGAGGGAG-----G--GGAGCTAC------------CACGAGACC---ATGTGAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675280 33 - 171630274 AGAGGGAG-----G--GGAGCTAC------------CATGAGACC---ATGTGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229061 33 +   1154217 AGAGGGAG-----G--GGCACTAC------------CATGAGACC---ATGTGAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048964 33 +  15232693 AGAGGGAG-----G--GGAGTTAC------------CATGAGACC---TTGTGAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298531 33 +    446445 AGAGGGAG-----G--GGAGTTAC------------CATGAGACC---ATGTGAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15352102 13 -  18854210 -----------------GAGTTAC------------TGAAAG-------------
i otoGar3.GL873550         I 4 C 0
s mm10.chr17                34362716 33 +  94987271 AGAGCATT-----G--AGAGCACC------------GGGGACACC---TCACGAT
i mm10.chr17               C 0 I 11
s canFam3.chr12             70400533 38 -  72498081 AGACAAAGCCAGTG--GGAGCTAC------------CATGACAAC---TCGTGAT
i canFam3.chr12            I 16 C 0
s dasNov3.JH569424            506982 50 +    935526 AGGTGGAA-----GACGGTGCTGCAGGAACAGAGCGCGCGGGGCCTGAGCGCGCC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e proCoq1.NW_012150019v1      160329 28 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=108566.000000
s hg38.chr6_KI270758v1_alt     52257 21 +     76752 -CCAGAGGAAAAACTGAGGCAC
s panTro5.chr6             142755556 21 - 175400573 -CCAGAGGAGAAACTGAGGCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903782 21 - 173848474 -CCAGAGGAGAAACTGAGGCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421741 21 +   2807050 -CCAGAGGAGAAACTGAGGCGC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714334 21 - 122973662 -CCAGAGGAGAAACTGAGGCAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675313 21 - 171630274 -CCAGAGGAGGAACTGAGGCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229094 20 +   1154217 --CAGAGGAGAAACTGAGGCAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14048997 20 +  15232693 --CAGAGGAGGAACTGAGGCAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298564 20 +    446445 --CAGAGGAGGAACTGAGGCAC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      160357 21 +   1371726 -CCAGAGGAGAAACTGAGGCAC
i proCoq1.NW_012150019v1   I 28 C 0
s mm10.chr17                34362760 21 +  94987271 -TGGGAGGAAATGCCAAGGCAC
i mm10.chr17               I 11 I 158
s canFam3.chr12             70400571 21 -  72498081 -CCAGAAGAGAAACTGAGGCAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            507032 22 +    935526 CCGGGACGGGAAACCGAGGCAC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15352115  0 -  18854210 C

a score=212530.000000
s hg38.chr6_KI270758v1_alt     52278 47 +     76752 GATTTTACCAGGTCCTATGTTCATTAAATACCAGAGGAGACCAGCAA
s panTro5.chr6             142755577 47 - 175400573 GATTTTACCAGGTCCTATGTTCATTAAATACCAGAGGAGACCAGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903803 47 - 173848474 GATTTTACCAGGTCCTATGTTCATTAAATACCAGAGGAGACCAGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421762 47 +   2807050 GATTTTACCAGGTCCTATGTTCATTAAATACCAGAGGAGACCAGCAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714355 47 - 122973662 GATTTTGCCAGGTCTTATGTTCATTAAATACCAGAGGAGACCAGCAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675334 47 - 171630274 GACTTTACCAGGTCTTATGTTCATTAAATACCAGAGGGGACCAGCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229114 47 +   1154217 GACTTTACCAGGTCTTGTGTTCATTAAATACCAGAGGGGACCAGCAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049017 44 +  15232693 AACTTTACCAGGTCTTATGTTCATTAAATACCAGAGGGGACCAG---
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298584 47 +    446445 GACTTTACCAGGTCTTATGTTCATTAAATACCAGAGGGGACCAGCAA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      160378 47 +   1371726 AGCTTTACCAAATCCTGTGTTCAGTTAGTACCAGAGGGGACCAGCAA
i proCoq1.NW_012150019v1   C 0 I 177
s otoGar3.GL873550          15352115 41 -  18854210 ------ACCAGATCTTATGTTCAGCTAGCAGCAGGCAGAACTGGCAG
i otoGar3.GL873550         C 0 I 8
s canFam3.chr12             70400592 45 -  72498081 GACTTTACCAAGTC--AAGTTCAGTTAGTATCAGAGGGGATTGACAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            507054 46 +    935526 GGCTCCACCGAGCCTTGCCTTCGGTTAGGACCCGAGGGGGCGGCTG-
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=530277.000000
s hg38.chr6_KI270758v1_alt     52325 168 +     76752 AGTA--------------ATGGCCTCATTCAAGGAGGTTGCAGCTGTGTTACCTGACACTTTGGGAGCTCATGGAGATTCCAGTGAGCATCAGATGGACACCTATAGGAAGCATGG-CATCATCTCTGTTCTATGTGTTGAGGGGAAAGGGAGCTGCCTCAGAATGTGTGGGGGATGACAGCA
s panTro5.chr6             142755624 168 - 175400573 AGTA--------------ATGGCCTCATTCAAGGAGGTTGCAGCTGTGTTACCTGACACTTTGGGGGCTCATGGAGATTCCAGTGAGCATCAGATGGACACCTATAGGGAGCATGG-CATCATCTCTGTTCTATGTGTTGAGGGGAAAGGGAGCTGCCTCAGAATGTGTGCGGGATGACAGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140903850 168 - 173848474 AGTA--------------ATGGCCTCATTCAAGGAGGTTGCAGCTGTGTTACCTGACACTTTGGGGGCTCATGGAGATTCCAGTGAGCATCAGATGGACACCTATAGGGAGCATGG-CATCATCTCTGTTCTATGTGTTGAGGGGAAAGGGAGCTGCCTCAGAATGTGTGCGGGATGACAGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421809 167 +   2807050 AGTA--------------ATGGCCTCATTCAAGGAGGTTGCAGCTGTGTTACCTGACACTTTGGG-GCTCATGGAGATTCCAGTGAGCATCAGATGGACACCTATAGGGAGCATGG-CATCATCTCTGTTCTATGTGTTGAGGGGAAAGGGAGCTGCCTCAGAATGTGTGGGGGATGACAGCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714402 168 - 122973662 AGTG--------------ATGGCCTCATTCAAGGAGGTTTCAGCTGTGTTACCTGACACTTTGGGGGCTCATGGAGATTCCAGTGAGCATCAGATGGACACCTATAGGGAGCACGG-CATCATCTCTGCTCTATGTGTTGAGGGGAAAGGGTGCTGCCTCAGAGTGTGTGGGGGATGACAGCA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675381 165 - 171630274 AGTG---------------CAGCCTCATTCAA-GACGTTTCCACTGTGTAACCTGACACTTCAGGGGCTCATGGGGATTCCAGTGAGCATCAGATGGACACCTAGAAGGAGCACTG-CATCGTCTCTACTCTACCTGTTGAGGGGAAAGGGA-TTGCCTCGGAGTGTGTGGGGGATGACAGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229161 164 +   1154217 AGTG---------------CAGCCTCGTTCAA-GACGTTTCCACTGTGTAACCTGACATTTTGGGGGCTCATGGGGATTCTGGTGAGCATCAGATGGACACCTAGAAGGAGCACGG-CATCGTCTCTACTCTGTGTGTTGAGGGGAAAGGGAGTTACCTTGGAGTGTGT--GGGATGACAGCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049061 139 +  15232693 -----------------------------------------CGCCGTGTAACCTGACACTTTGGGGGCTCATGGGGATTCCGGTGAGCATCAGATGGACACCTATAAGGAGCACTG-CATCGTCTCTACTCTGTGTGTTGAGGGGAAAGGGAGTTACCTTGGAGTTTGT--GGGATGACAGCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298631 166 +    446445 AGTG---------------CAGCCTCATTCAA-GACGTTTCCACTGTGTAACCTGACACTTTGGGGGCTCATGGGGATTCCAGTGAGCATCAGATGGACACCTATAAGGAGCACTG-CATCGTCTCTACTCTACGTGTTGAGGGGAAAGGGAGTTGCCTCGGAGTGTGTGGGGGATGACAGCA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15352164 168 -  18854210 AATGT-------------GCAGCCTCCTTGAGGGACCATTCTACTGTGTAATCTGCTTCTTTGGGGGTTCATGG-GATTCCCCTGAGTCTCAGATGGACTCCCATAAGGGGCAGGG-CATCATTTCTGTTCTGTGTGGCCAGAGGAAAGGGCGCTCCCTTAGGGCATGAGGGGAACAGCTGGG
i otoGar3.GL873550         I 8 C 0
s canFam3.chr12             70400637 167 -  72498081 ----AACACAGGCCTC-CACAGGCTCCCTCAGGTACCTTTGCACTTCATGAC---------TAAGTGTTCACGGGGACCCCAGTAAGCCTCAGATGGACACCTATAAAGGGCACAGACATAATCATTGCTTTATTTGGCTGGAGGAAAGGGTGCTACCT--GTGTGTGTAAGGGATGGTATAG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            507100 164 +    935526 ----------GGCCGAGCCCCACCCCCTTCAG-GGTTCTTCCCCAGGGTCACCTGCACC--TGGCGTTCCGCGGAGTGTCCAGCGAGGCTCGGGTGGACGCGCACGGGGTGCGC-G-CGCCGTCTCCTTTCAGTGTGGGGCGGAAGAGGGGCGCCGT----GGGTGCGCggagggcgggtgcg
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e proCoq1.NW_012150019v1      160425 177 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=98119.000000
s hg38.chr6_KI270758v1_alt     52493 23 +     76752 GACAGCTGGCCGGGGCCTGGAGG
s panTro5.chr6             142755792 23 - 175400573 GACAGCTGGCCGCGGCCTGGAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904018 23 - 173848474 GACAGCTGGCCGGGGCCTGGAGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421976 23 +   2807050 GACAGCTGGCCGGGGCCTGGAGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714570 22 - 122973662 GACAGCTGGCCG-GGCCTGGAGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675546 23 - 171630274 GACAGCTGGCCAGGGTCTGGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229325 23 +   1154217 GACAGCTGACCAGGGTCTGGAGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049200 23 +  15232693 GACAGCTGGCCAGGGTCTGGAGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298797 23 +    446445 GACAGCTGGCCAGGGTCTGGAGG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      160602 23 +   1371726 GACAGCTGGCCAGGCTCTGGAGG
i proCoq1.NW_012150019v1   I 177 C 0
s otoGar3.GL873550          15352332 23 -  18854210 AGTGGTTGGCTGGACTCTAGAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70400804 23 -  72498081 AACAGACTGTGGGACTCTGGGAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            507264 21 +    935526 --cgtagggcgggtgcgcggagg
i dasNov3.JH569424         C 0 I 348
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=119110.000000
s hg38.chr6_KI270758v1_alt     52516 23 +     76752 CCCTTTGAAAACATTTCAAGTGT
s panTro5.chr6             142755815 23 - 175400573 CCCTTTGAAAACATTTCAAGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904041 23 - 173848474 CCCTTTGAAAACATTTCAAGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2421999 23 +   2807050 CCCTTTGGAAACATTTCAAGTGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714592 23 - 122973662 CCCTTTGAAAACACTTCACGTGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675569 23 - 171630274 CCCTTTGAAAACATTTCAAGTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229348 23 +   1154217 CCCTTTGAAAACATTTCAAGTGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049223 23 +  15232693 CCCTTTGAAAACATTTCAAGTGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298820 23 +    446445 CCCTTTGAAAACATTTCAAGTGT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      160625 23 +   1371726 CCCTTTTAAAGCATTTCGAGTGT
i proCoq1.NW_012150019v1   C 0 I 222
s otoGar3.GL873550          15352355 23 -  18854210 CCCTTTAAAAGTATTTCAAGTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70400827 23 -  72498081 CCCTTTTAAAATCTTTCTAGTGT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            507285 348 +    935526 I

a score=540840.000000
s hg38.chr6_KI270758v1_alt     52539 160 +     76752 GAACAAGGGCAGCATCATTATGACAACCTGGG--TTGCACCCAGCACCTCCCTGCTC-AACTCTGCTATGGGGTCCTGCACCTGCTCCTCACCCCAGTACACCCCTAAGCTAATCACTATTGGGAGGGAGCTGTTACTTT-CTGAGTGCAACCTGGGATACTGT--
s panTro5.chr6             142755838 160 - 175400573 GAACAAGGGCAGCATCATTATGACAACCAGGG--TTGCACCCAGCACCTCCCTGCTC-AACTCTGCTATGGGGTCCTGCACCTGCTCCTCACCCCAGTACATCCCTAAGCTAATCACTATTGGGAGGGAGCTGTTACTTT-CTGAGTGCAACCTGGGATCCTGT--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904064 160 - 173848474 GAACAAGGGCAGCATCATTATGACAACCAGGG--TTGCACCCAGCACCTCCCTGCTC-AACTCTGCTATGGGGTCCTGCACCTGCTCCTCACCCCAGTACACCCCTAAGCTAATCACTATTGGGAGGGAGCTGTTACTTT-CTGAGTGCAACCTGGGATCCTGT--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422022 160 +   2807050 GAACAAGGGCAGCATCATTATGACAACCAGGG--TTGCACCCAGCACCTCCCTGCTC-AACTTTGCCATGGGCTCCTGCACCTGCTCCTCACCCCAGTACACCCCTAAGCTAATCACTATTGGGAGGGAGCTGTTACTTT-CTGAGTGCAACCTGGGATACTGT--
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714615 160 - 122973662 GAACAAGGGCAGCATCATTATGACAACCAGGG--TTGCACCCACCACCTTCCTGCTC-AACTCTGCTATGGGGTCCTGCACCTGCTCCTCACCCCAGTAGACCCCTAAGCTAATCACTATTGGGAGGGAGCTGTTACTTT-CAGAGTGCAACCTGGGATCCTGT--
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675592 161 - 171630274 GAGCAAGGGCAGCATCATTATGATAACTGGGA-TTTGCACCCACCGCCTCCCCACTC-AACCCTGGTATGGGGTCCTGCACCTGCTCCTCACCACAGTAGGCCCCTAATCTAATCACTATTGGGAAGGAACTGTTACTTT-CTAGGTGCAACCTGGGATCCTGT--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229371 161 +   1154217 GAGCAAGGGCAGCATTATTATGATAACTGGGA-TTTGCACCCACCACCTCCCCACTC-AACCCTGCTGTGAGGTCCTGCACCTGCTTCTCACCACAGCAGGCCCCTAACCTAATCACTATTGGGAAGGAACTGTTACTTT-CTAGGTGCAACCTGGGATCCTGT--
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049246 161 +  15232693 GAGCAAGGGCAGCATCATTATGATAACTGGGA-TTTGCACGCACCACCTCCCCACTC-AACCCTGCTTTGGGGTCCTGCACCTGCTTCTCACCACAGCAGGCCCCTAACCTAATCACTATTGGGAAGGAACTGTTACTTT-CTAGGTGCAGCCTGGGATCCTGT--
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      298843 161 +    446445 GAGCAAGGGCAGCATCATTCTGATAACCGGGA-TTTGCAGCCACCACCTCCCCACTC-AACCCTGCTATGGGGTCCTGCACCTGCTCCTCACCACAGCAGGCCCCTTATCTAATCACTATTGGGAAGGAATTGTTACTTT-CTAGGTGCAAGCTGGGATCCTGT--
i aotNan1.NW_018508875v1   C 0 I 27
s otoGar3.GL873550          15352378 160 -  18854210 AAGTGAAGGCAGTGCCATCATGGCAACTGGAA-GTGTCACCCACCACACACACCCTCTGGCCCTGCTGTGGG-TTCTGTCCCAGCGGGTCACTCCAGTAGGCTCCTAACCTTGCTGCTG-TGGGAGGGAACTGTAGCTTC-TTGGGTATAGCCTGGCGCCCTCT--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70400850 151 -  72498081 ----GAAGGCAGTGTCATCATGGTAACTAGAGTTCCCCACCTGTCACCTCAACCCTCTGGCCCTGCTGTGGT-TTCTGCA---------CACCCCAGTGGA-TCCAAACCTCATCACTACTGGGAGGGAGCCATAACTTTCCCAGATGTAGCCTGGAACACTGCCT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e proCoq1.NW_012150019v1      160648 222 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            507285 348 +    935526 I

a score=6570.000000
s hg38.chr6_KI270758v1_alt     52699 2 +     76752 GA
s panTro5.chr6             142755998 2 - 175400573 GA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904224 2 - 173848474 GA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422182 2 +   2807050 GA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714775 2 - 122973662 GA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675753 2 - 171630274 CA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229532 2 +   1154217 GA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049407 2 +  15232693 GA
i cebCap1.NW_016107339v1   C 0 I 25
s otoGar3.GL873550          15352538 2 -  18854210 GA
i otoGar3.GL873550         C 0 I 8
s canFam3.chr12             70401001 2 -  72498081 GA
i canFam3.chr12            C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e proCoq1.NW_012150019v1      160648 222 +   1371726 I
e aotNan1.NW_018508875v1      299004 27 +    446445 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            507285 348 +    935526 I

a score=14181.000000
s hg38.chr6_KI270758v1_alt     52701 23 +     76752 GTGTAGCAA----tttttttttttttt
s panTro5.chr6             142756000  9 - 175400573 GTGTGGCAA------------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904226 23 - 173848474 GTGTGGCTA----Attttttttttttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422184 23 +   2807050 GTGTGGCAA----tttttttttttttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714777  9 - 122973662 CTGTGGCAA------------------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675755 23 - 171630274 CTGTGGCAA----TAATTTTTGTCTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229534 23 +   1154217 CTGAGGCAA----TAATTTTTGTCTTT
i saiBol1.JH378315         C 0 C 0
s otoGar3.GL873550          15352548 23 -  18854210 CTGGGATAA----TAATTTTCCTTTTC
i otoGar3.GL873550         I 8 I 3
s canFam3.chr12             70401003 23 -  72498081 ----GGCAATCAATCATTTTCCTGTTT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e cebCap1.NW_016107339v1    14049409 25 +  15232693 I
e proCoq1.NW_012150019v1      160648 222 +   1371726 I
e aotNan1.NW_018508875v1      299004 27 +    446445 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            507285 348 +    935526 I

a score=5962.000000
s hg38.chr6_KI270758v1_alt     52724 8 +     76752 tttttttt
s panTro5.chr6             142756009 1 - 175400573 -------t
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904249 8 - 173848474 tttttttt
i panPan2.chr6             C 0 M 98
s gorGor5.CYUI01000036v1     2422207 8 +   2807050 tttttttt
i gorGor5.CYUI01000036v1   C 0 C 0
s otoGar3.GL873550          15352574 8 -  18854210 TTCTTTTT
i otoGar3.GL873550         I 3 C 0
s canFam3.chr12             70401026 8 -  72498081 TTCTTTTT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e cebCap1.NW_016107339v1    14049409 25 +  15232693 I
e proCoq1.NW_012150019v1      160648 222 +   1371726 I
e aotNan1.NW_018508875v1      299004 27 +    446445 I
e calJac3.chr4             138675778 0 - 171630274 C
e saiBol1.JH378315            229557 0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            507285 348 +    935526 I
e nomLeu3.chr1a             45714786 0 - 122973662 C

a score=1423.000000
s hg38.chr6_KI270758v1_alt     52732 7 +     76752 ttttttt
s panTro5.chr6             142756010 7 - 175400573 ttttttt
i panTro5.chr6             C 0 C 0
s canFam3.chr12             70401034 7 -  72498081 CTTTCTT
i canFam3.chr12            C 0 I 6
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e cebCap1.NW_016107339v1    14049409 25 +  15232693 I
e proCoq1.NW_012150019v1      160648 222 +   1371726 I
e aotNan1.NW_018508875v1      299004 27 +    446445 I
e calJac3.chr4             138675778 0 - 171630274 C
e saiBol1.JH378315            229557 0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15352582 0 -  18854210 C
e dasNov3.JH569424            507285 348 +    935526 I
e panPan2.chr6             140904257 98 - 173848474 M
e nomLeu3.chr1a             45714786 0 - 122973662 C
e gorGor5.CYUI01000036v1     2422215 0 +   2807050 C

a score=302198.000000
s hg38.chr6_KI270758v1_alt     52739 619 +     76752 ttttttttttttttgagacggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatcttggctcactgcaagctccgcctcccaggttcaggccattctcctgcctcagcctcccaagtagctgggactacaggcaaccgccaccacgcccggctaattttttgtatttttagtagagac-gagatttcaccgtgttagccaggatggtctcgatctcctgatctcgtgatccccccacctcagcctcccaaagtgctgggattacaggcgtgagccaccacgccgggcAttttttttttttttttttttgagacggagtctcgctctgttgcccaagctggagtgcaatggcgccatcttggctcactgcaacctccgtctcctggattcaagctattctcctgcctcagcctcctgagtaactgggactacaggcacacaccaccacacccagctaatttgtttttt-------ttttt------tttttttttttgtatttttagtagagacggggtttcaccatgttggccaggatggtcttgatctcctgacctcatgatccgctggccttggcctcccaaagggc-aggattacaggcatgagccactgcacccagccTAAT
s panTro5.chr6             142756017 619 - 175400573 ttttttttttttttgagatggagtctcactctgtcgcccaggctggagtgcagtggcgcaatctcggctcactgcaagctccccctcccgggttcaggccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccacgcctggctatttttttgtatttttagtagagat-gagatttcaccgtgttagccaggatggtctcgatctcctgatctcgtgatccccccacctcagcctcccaaagtgctgggattacaggtgtgagccacggcgccgggcA-------tttttttttttttgagacggagtctcgctctgttgcccaagctggagtgcaatgatgccatcttggctcactgcaacctccgtctcctggattcaagctattctcctgcctcagcctcctgagtaactgggactacaggcacacaccaccacacccagctaatttgttttttgtttttgttttt------tgtttttttttgtatttttagtagagatggggtttcaccatgttggccaggatggtcttgatctcctgacctcatgatccgctggccttggcctcccaaagggc-aggattacaggcatgagccactgcacccagccTAAT
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422215 591 +   2807050 --------------gagacggagtcttgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcct-ccgggttcaggccattctcctgcctcagcctcccaagtagctgggactacaggcgcccgccaccacgcccggctaa-tttttgtatttttagtagagac-gagatttcactgtgttagccaggatggtctcgatctcctgatctcgtgat-cccccacctcagcctcccaaagtgctgggattacaggcatgagccaccgcgccgggcA-----tttttttttttttttgagacggagtctcgctctgttgcccaagctggagtgcaatggcgccatcttggctcactgcaacctccgtctcctggattcaagctattctcctgcctcagcctcctgagtaactgggactacaggcacacaccaccacacccagctaa------tttt-------ttttt------tttttttttttgtatttttagtagagatggggtttcaccatgttggccaggatggtcttgatctcctgacctcatgatccgctggccttggcctcccaaagggc-aggattacaggcatcagccactgcacccagccTAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45714786 627 - 122973662 -tttttttttttttgagacggagtctcgctctgtcgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcaggccattctcctgcctcagcctcccaagtagctgggactacaggtgaccgccaccacacctggctaattttttgtatttttagtagagatgggggtttcaccgtgttagccaggatggtcttgatctcctgacctcgtgatctccccacctcagccccccagagtgctgggattacaggtgtgagccaccacgcGGGGC------tttttttttttttttgagacggagtctcactctgtcacccaggctggagtgcagtggtgccatcttgactcactgcaacctctgcctcccgggttcaagcgattctcctgcctcagcctcctgagtagctgggactgcaggcacgtgccaccacacccagctaatttgttttttgttttgttttttggtgggtttttttttttgtatttttagtagagatgggatttcaccatgttcgccaggatggtctcgatctcctgacctcgggatccgccagccttggcttcccaaaaggctgggattacaggcatgagccactgcacccagccTAAT
i nomLeu3.chr1a            C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e cebCap1.NW_016107339v1    14049409  25 +  15232693 I
e proCoq1.NW_012150019v1      160648 222 +   1371726 I
e aotNan1.NW_018508875v1      299004  27 +    446445 I
e calJac3.chr4             138675778   0 - 171630274 C
e canFam3.chr12             70401041   6 -  72498081 I
e saiBol1.JH378315            229557   0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15352582   0 -  18854210 C
e dasNov3.JH569424            507285 348 +    935526 I
e panPan2.chr6             140904257  98 - 173848474 M

a score=9666.000000
s hg38.chr6_KI270758v1_alt     53358 12 +     76752 TTTTGTTTTTTA
s panTro5.chr6             142756636 12 - 175400573 TTTTGTTTTTTA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422806 12 +   2807050 TTTTGTTTTTTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715413 12 - 122973662 TTTTGTTTTTTA
i nomLeu3.chr1a            C 0 C 0
s dasNov3.JH569424            507633 12 +    935526 TTTTGTTTCTTT
i dasNov3.JH569424         I 348 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e cebCap1.NW_016107339v1    14049409 25 +  15232693 I
e proCoq1.NW_012150019v1      160648 222 +   1371726 I
e aotNan1.NW_018508875v1      299004 27 +    446445 I
e calJac3.chr4             138675778  0 - 171630274 C
e canFam3.chr12             70401041  6 -  72498081 I
e saiBol1.JH378315            229557  0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15352582  0 -  18854210 C
e panPan2.chr6             140904257 98 - 173848474 M

a score=-1390.000000
s hg38.chr6_KI270758v1_alt     53370 1 +     76752 -A
s panTro5.chr6             142756648 1 - 175400573 -A
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422818 1 +   2807050 -A
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715425 1 - 122973662 -A
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550          15352582 1 -  18854210 -A
i otoGar3.GL873550         C 0 I 3
s dasNov3.JH569424            507645 1 +    935526 T-
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e cebCap1.NW_016107339v1    14049409 25 +  15232693 I
e proCoq1.NW_012150019v1      160648 222 +   1371726 I
e aotNan1.NW_018508875v1      299004 27 +    446445 I
e calJac3.chr4             138675778 0 - 171630274 C
e canFam3.chr12             70401041 6 -  72498081 I
e saiBol1.JH378315            229557 0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140904257 98 - 173848474 M

a score=-6530.000000
s hg38.chr6_KI270758v1_alt     53371 7 +     76752 -----ATCTCGG
s panTro5.chr6             142756649 7 - 175400573 -----ATCTCGG
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422819 7 +   2807050 -----ATCTCGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715426 7 - 122973662 -----ATCTTGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675778 2 - 171630274 -----AT-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229557 2 +   1154217 -----AT-----
i saiBol1.JH378315         C 0 C 0
s otoGar3.GL873550          15352586 4 -  18854210 -----ATGT---
i otoGar3.GL873550         I 3 C 0
s canFam3.chr12             70401047 2 -  72498081 -----AC-----
i canFam3.chr12            I 6 C 0
s dasNov3.JH569424            507646 7 +    935526 CCCTTAC-----
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e cebCap1.NW_016107339v1    14049409 25 +  15232693 I
e proCoq1.NW_012150019v1      160648 222 +   1371726 I
e aotNan1.NW_018508875v1      299004 27 +    446445 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140904257 98 - 173848474 M

a score=40368.000000
s hg38.chr6_KI270758v1_alt     53378 12 +     76752 AGTTGGACTGAG
s panTro5.chr6             142756656 12 - 175400573 AGTTGGACTGAG
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422826 12 +   2807050 AGTTGGACTGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715433 12 - 122973662 AGTTGGACTGAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675780 12 - 171630274 AGTTGAACTGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229559 12 +   1154217 AGTTGAACTGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049434 12 +  15232693 AGTTGAACTGAG
i cebCap1.NW_016107339v1   I 25 C 0
s aotNan1.NW_018508875v1      299031 12 +    446445 AGTTGAACTCAG
i aotNan1.NW_018508875v1   I 27 C 0
s otoGar3.GL873550          15352590 12 -  18854210 AGTTGGACTCCA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70401049 12 -  72498081 AGTTGGACTGCA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            507653 11 +    935526 AGTTG-CCTGCA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e proCoq1.NW_012150019v1      160648 222 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140904257 98 - 173848474 M

a score=135833.000000
s hg38.chr6_KI270758v1_alt     53390 35 +     76752 GGTATTATTTTGCTGCAC----CT------GAGATAAG-TGGTTTA
s panTro5.chr6             142756668 35 - 175400573 GGTATTATTTTGCTGTAC----CT------GAGATAAG-TGGTTTA
i panTro5.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422838 35 +   2807050 GGTATTATTTTGCTGTAC----CT------GAGATAAG-TGGTTTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715445 35 - 122973662 AGTATTATTTTGCTGTAC----CT------GAGATAAG-TTGTTTA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675792 35 - 171630274 GCTATTATTTTACTGTAC----CT------GAGATAAG-TGGTTTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229571 35 +   1154217 GGTATTATTTTACTGTAC----CT------GAGATAAG-TGGTTTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049446 35 +  15232693 GGTATTATTTTATTGTAC----CT------GAGATAAG-TGGTTTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299043 35 +    446445 GGTATTATTTTACTGTAC----CT------GAGATAAG-TGGTTTA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      160870 35 +   1371726 GGTATCATTTTATTGTAC----CT------AAGATAGG-TGGTTTA
i proCoq1.NW_012150019v1   I 222 C 0
s otoGar3.GL873550          15352602 36 -  18854210 GATACTATTTTACTGTAC----CT------AAGATAAGTTGGCTTA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70401061 40 -  72498081 -GTATTACTTTACTGTAC----CTAAGGTAAAGATAAG-TGGTTTA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            507664 25 +    935526 GATATTACTGCTTTGTACAAATCT------C---------------
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140904257 98 - 173848474 M

a score=267197.000000
s hg38.chr6_KI270758v1_alt     53425 59 +     76752 AAACAT-AACCAGCC-GATGGCTGAGCCCCTTTGAGTTTCCCCTTTACCTCCTTACTAGCT
s panTro5.chr6             142756703 59 - 175400573 AAACAT-AACCGGCC-GATGTCTGAGCCCCTTTGAGTTTCCCCTTTACCTCCTTACTAGCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904356 57 - 173848474 AAACAT-AACCAGCC-GATGTCTGAG-CCCTTTGAGTTT-CCCTTTACCTCCTTACTAGCT
i panPan2.chr6             M 98 C 0
s gorGor5.CYUI01000036v1     2422873 59 +   2807050 AAACAT-AACCAGCC-GATGTCTGAGCCCCTTTGAGTTTCCCCTTTACCTCCTTACTAGCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715480 59 - 122973662 AAACAT-AACCAGCC-AATGTCTGAGCCCCTTTGAATTTCCCCCTTACCTCCTTACTTGCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675827 58 - 171630274 AAACAT-AACCAGCT-GATGTCTGAGTCCCTTTCAGTTTCCCCTTTACCTCC-TACTATCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229606 60 +   1154217 AAACATAAACCAGCT-CATGTCTGAGCCCCTTTCAGTTTCCCCTTTACCTCCTTACGATCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049481 59 +  15232693 AAACAT-AACCAGCT-GATGTCTGAGTCCCTTTCAGTTTCCCCTTTACCTCCTTACAATCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299078 59 +    446445 AAACAT-AACCAGCT-GATGTCTGAGCCCCTTTCAGTTTCCCCTTTACCTCCTTACTATCT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      160905 59 +   1371726 AAAAAT-AACCAACT-GATATTCAAGCCCCTTCCGGTTGCTCCTTTAGCTCCTTACCGTCT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15352638 60 -  18854210 AAAAAT-AACCAGCTGGATATTCTGGCCCTTTTTGGTTTCTCCTTCAGCTTCTTACCATCT
i otoGar3.GL873550         C 0 I 4
s canFam3.chr12             70401101 58 -  72498081 AAAAGT-AACCAACT-GATATCTGAGCCTCTTTCAGTTTCTCCTTTGCCTCCTTACCACT-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            507689 55 +    935526 -AAGCT-CACCAGCT----GCTTGAGCCCCTTCGGGTTTCTCCTGTAACTCCTTGTCTTTC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4490328 670 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=185847.000000
s hg38.chr6_KI270758v1_alt     53484 31 +     76752 CCCTCCTTTTTATGGCCTCTTCTCCCAGCCC
s panTro5.chr6             142756762 31 - 175400573 CCCTCCTTTTTATGGCCTCTTCTCCCAGCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904413 30 - 173848474 CCCNCC-TTTTATGGCCTCTTCTCCCAGCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422932 31 +   2807050 CCCTCCTTTTTATGGCCTCTTCTACCAGCCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715539 31 - 122973662 CCCTCCTTTTTATGGCCTCTTCTTCCAGCCC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675885 31 - 171630274 CCCTTCTTTCTATGGCCTCTTCTCCCAGCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229666 31 +   1154217 CCTTCCTTTCTATGGCCTCTTCTCCCAGCCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049540 31 +  15232693 CCCTCCTTTCCATGGCCTCTTCTCCCAGCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299137 31 +    446445 CGCTCCTTTCTATGGCCTCTTCTCTCAGCCC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4490998 31 + 123392446 CCCTCCTCTTTATGGCCTCTTCTCCCAGCCC
i micMur3.chr6             I 670 I 151
s proCoq1.NW_012150019v1      160964 31 +   1371726 CCCTCCTCTTTATGGCCTCTTCTGCCAGCCC
i proCoq1.NW_012150019v1   C 0 I 92
s otoGar3.GL873550          15352702 22 -  18854210 CTCTCTTCCTTATG---------CCCAGCCC
i otoGar3.GL873550         I 4 C 0
s canFam3.chr12             70401159 31 -  72498081 TCCTCCTTTCTGTGACCTCTTCTCCCAGCCC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            507744 30 +    935526 CCCTCCGTTCCATGACCTTTGCTCCCAGAT-
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=395846.000000
s hg38.chr6_KI270758v1_alt     53515 112 +     76752 AAGGCAA-------CCAGCCTGCCTCCCTGCCTAGGTGCATAGAACG-TGGATCCCTTATGTGCTCTTTCCATCAATTCCTTGCTCTCCATCAAGTCACCTGCTCCAGGAATGTGTATCC
s panTro5.chr6             142756793 112 - 175400573 AAGGCAA-------CCAGCCTGCCTCCCTGCCTAGGTGCATAGAATG-TGGATCCCTTATGTGCTCTTTCCATCAATTCCTTGCTCTCCATCAAGTCACCTGCTCCAGGAATGTGTGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904443 112 - 173848474 AAGGCAA-------CCAGCCTGCCTCCCTGCCTAGGTGCATAGAATG-TGGATCCCTTATGTGCTCTTTCCATCAATTCCTTGCTCTCCATCAAGTCACCTGCTCCAGGAATGTGTGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2422963 112 +   2807050 AAGGCAA-------CCAGCCTGCCTCCCTGCCTAGGTGCATAGAACA-TGGATCCCTTATGTGCTCTTTCCATCAATTCCTTGCTCTCCATCAAGTCACCTGCTCCAGGAATGTGTGTCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715570 112 - 122973662 AAGGCAA-------CCCACCTGCCTCCCTGCCTAGGTGCATAGAACG-TGGATCCCTTATGTCCTCTTTCCATCAATACCTTGCTCTCCATCAAGTCACCTGCTCCAGGAATGTGTGTCC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138675916 108 - 171630274 AAGGCAA-------CCCACCTG-CTCCCTGCCTAGGTGCATAGAACC-TGGAT-CCTTATGTCCTCCTTCCCTCAATACCCTGCTCTCCACCAAGTCACCTGCTCCAGGAATGTGTG--T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229697 109 +   1154217 AAGGCAA-------CCTGCCTG-CTCCCTGCCTAGGTGCATAGAACC-TGGATCCCTTATGTCCTCCTTCCATTAATACCCTGCTCTCCATCAAGTCACCTGCTCCAGGAATGCGTG--C
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049571 109 +  15232693 AAGGCAA-------CCTGCCTG-CTCCCTGCCTAGGTGTATAGAACC-TGGATCGCTTATGCCCTCCTTCTATCAACACCCTGCTCTCCCTCAAGTCACCTGCTGCAGGAATGTGGG--C
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299168 108 +    446445 AAGGCAA-------CCTGCCTG-CTCCCTGCCTAGGTGCATAGAACC-TGGAT-CCTTATGTTCTCCTTCCATCAATACCCTGCTCTCCATCAAGTCACCTGCTCCAGGAATGTGTG--C
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15352724 109 -  18854210 AGGACAAATACAGCCCAGTCTG-TTCCCTGCCCAGATGCATATGAT--------CCTCATTTCCTCCTTCCATCCCCACCCTGCTCTCCTTCAAGTCACCTTTTACCAGAACGTGTGT--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70401190 106 -  72498081 ATGATAA-------CCAGCCTG-TTTCCTGCCCAGATACATATGACCTTGTATCACTTGT------TTTCCACTAATCTCCTGCTCTCCCTCCACTCACTGGTTACAGAAATGTGTGTGT
i canFam3.chr12            C 0 I 10
s dasNov3.JH569424            507774  99 +    935526 -------------GCCAGCCTG-----CTGCCCAGATGCGCAGGAGC-CTGTGTCATCGTTCTCCCCGTCCAGCGACTCTCT--TCTCCATCAAGTCACCTGCTAAAGGAGCGTGTGTGC
i dasNov3.JH569424         C 0 I 2
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491029 151 + 123392446 I
e proCoq1.NW_012150019v1      160995  92 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=269306.000000
s hg38.chr6_KI270758v1_alt     53627 50 +     76752 ATGTGTGTGCTTTAGGTGAGCTTAAGCACACCTTTCAGCCCACAAAAGAG
s panTro5.chr6             142756905 50 - 175400573 ATGTGTGTGCTTTAGGTGAGCTTAAGCACACCTTTCAGCCCACAAAAGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904555 50 - 173848474 ATGTGTGTGCTTTAGGTGAGCTTAAGCACACCTTTCAGCCCACAAAAGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423075 50 +   2807050 ATGTGTGTGCTTTAGGTGAGCTTAAGCACACCTTTCAGCCCACAAAAGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715682 50 - 122973662 ATGTGTGTGCTTTAGGTGAGCTTAAGCACACCTTTCAGCCCACAAAAGAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676024 50 - 171630274 ACGTGTGTGCTTTAGATGAGCTTAAGCACACCTTTCAGCCCACAAAAGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229806 50 +   1154217 ATGTGTGTGTTTTAGGTGAGCTTAAGCACACCTTTCAGCCCACAAAAGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049680 50 +  15232693 ATGTGTGTGCTTTAGGTGAGCTTAAGCACACCTTTCAGCCCACAAAAGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299276 50 +    446445 ATGTGTGTGCTTTAGGTGAGCTTAAGCACACCTTTCAGCCCACAAAAGAG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      161087 50 +   1371726 ATGTGTGTGCTTTAGGTGAGCTTACGTGTTCCTTTCAGCCCATGTAGAAG
i proCoq1.NW_012150019v1   I 92 I 1
s otoGar3.GL873550          15352833 43 -  18854210 -------TGCTTTAGGCGAGTGTAAGCCCTCCTTTCAGCCTGTGTACAAG
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70401306 50 -  72498081 CTATGTGCACATTAGGTGAGCTTGAGCATACTCTTCAGCCCAAGTAGGAA
i canFam3.chr12            I 10 C 0
s dasNov3.JH569424            507875 50 +    935526 ATGCGTGCGCTTTAGGCGCGCTCAAGCCCCCCTTCCATCTCGTAGGAGTG
i dasNov3.JH569424         I 2 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491029 151 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=602245.000000
s hg38.chr6_KI270758v1_alt     53677  99 +     76752 TTTTTGAGGAAAATCA-GGGTAACAAACACAACCCAATCTCTACCAGAG-TCTACTATGGCACCTTCAACCCC----ATTAGGCCATAAACATAAAGGGAAGGGT
s panTro5.chr6             142756955  99 - 175400573 TTTTTGAGGAAAATCA-GGGTAACAAACACAACCCAATCTCTACCAGAG-TCTACTATGGCACCTTCAACCCC----ATTAGGCCATAAACATAAAGGGAAGGGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904605  99 - 173848474 TTTTTGAGGAAAATCA-GGGTAACAAACACAACCCAATCTCTACCAGAG-TCTACTATGGCACCTTCAACCCC----ATTAGGCCATAAACATAAAGGGAAGGGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423125 100 +   2807050 TTTTTGAGGAAAATCAGGGGTAACAAACACAACCCAATCTCTACCAGAG-TCTACTATGGCACCTTCAACCCC----ATTAGGCCATAAACATAATGGGAAGGGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715732  99 - 122973662 TTTTTGAGGAAAATCA-GGATAACAAACACAACCCAATCTCTACCAGAG-TCTACTATGGCACCTTCAACCAC----ATTAGGCCATAAACATAAAGGGAACGGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676074  99 - 171630274 TTTTTGAGGAAAATCA-GGGTGAAAAATACAACCCAATCTCTGCCAGAG-TCTAATGTGGCACCTTCAATCCC----ATCAGGCCATAAACATAAAGGGAAAGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229856  99 +   1154217 TTTTTGAGGAAAATCG-GGGTAACAAACACAACCCAATCCCTGCCAGAG-TCTAATGTGGCACCTTCAATCCC----ATCAGGCCATAAACATAAAGGGAAGGGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049730  99 +  15232693 ATTTTGAGGTAAATGA-GGGTAACAAACACAATGCAATCTCTGCCAGAG-TCTAATGTGGCACCTTCAATCCG----GTCAGGCCATAAACATAAAGGGAAGGGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299326  99 +    446445 TTTTTGAGGAAAATCA-GGATAACAAGCACAACCCAATCTCTGCCAGAG-TCTAATGTGGCACCTTCAATCCC----ATCAGGCCATAAACATAAAGGGAAAGGT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4491180  98 + 123392446 TTTTTGAGGAAAATCA--GACGACAAACACACCCCAATCTCTGCCAGAG-TCTACTGTGGCAGCCTCGACCCC----ATCGGGTCCTAAAGATAAAGGGAAGGGT
i micMur3.chr6             I 151 I 119
s proCoq1.NW_012150019v1      161138  98 +   1371726 TTTTTCAGGAAAATCA--GATGACAAACACACCCCAATCCCTGCCAGAG-TCTACTGTGGCACCCTCGACCCC----ATCGGGTCATAAAGATAAAGGGAAAAGT
i proCoq1.NW_012150019v1   I 1 C 0
s otoGar3.GL873550          15352877 102 -  18854210 CTTTTGAGGAAAATCA--GATGGTGAATACACCCCAATCTCTGCCAGAG-TCTTCTGTGTCACCTTCGACCCCTCCTGTTGGGTCATAAAGATAAAGGGAAGGAT
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70401356 100 -  72498081 GTTTTGAGGAAAATCA-GGATGGCAAACACACCCCAATCTCTGCCAGAGTTCTAGTGTGACACTTTCGACCTC----ATTAGGCCATAAAGATAAAGAGAAGGGC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            507925  93 +    935526 -----GAGAAAAACCG-CAGAGACAAACACCCCCCGCT-TTTGCCAGAG-CCTAGTGTGAAACCTTTGACCCC----GCTGGAGCATTAAGATAAATGGAAGGGC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=217198.000000
s hg38.chr6_KI270758v1_alt     53776 45 +     76752 CCCTGGAAGGCGCAAAGTAACTCCACAATCTGAGGAGAGACACAC
s panTro5.chr6             142757054 45 - 175400573 CCCTGGAAGGCGCAAAGTAACTCCACAATCTGAGGAGAGACACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904704 45 - 173848474 CCCTGGAAGGCGCAAAGTAACTCCACAATCTGAGGAGAGACACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423225 45 +   2807050 CCCTGGAAGGCGCAAAGTAACTCCACAATCTGAGGAGAGACACAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715831 45 - 122973662 CCCCGGAAGGCTCAAAGTAACTCCACAATCTGAAGAGAGACACAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676173 45 - 171630274 CTCTGGAAGGCGTAAGGTAACTCCACAATCTGAGGAGAGACACAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            229955 45 +   1154217 CTCTGGAAGGCGCAAGGTAACTTCACAATCTGAGGAGAGACACAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049829 45 +  15232693 CTCTGGAAGGCGCAAGGTAACTCGGCAATCTGAGGAGAGACACAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299425 45 +    446445 CTCTGGAAGGTGCAAGGTAACTCCACAATCTGAGGAGAGACACAC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      161236 45 +   1371726 TGCGGGAAGGTCAAAGGTAACTCCACAATGTGAGAAGAGGCACAC
i proCoq1.NW_012150019v1   C 0 I 71
s otoGar3.GL873550          15352979 45 -  18854210 TTCAGGAAGGTCGAAGGTAACCCCACAGTGTGAGGAGAGACACAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70401456 45 -  72498081 CTCAGGAGGGTCAAAGGTAATTCCACAATCCATGGACAGCTGCAC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            508018 41 +    935526 CGCAGGGAGGTA-AAGGTCGCTCCGCTGTCTGAGGAGA-CTGC--
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491278 119 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=74575.000000
s hg38.chr6_KI270758v1_alt     53821 22 +     76752 ACCTG------TGTACCT--------------------TACCCT----TCTG
s panTro5.chr6             142757099 22 - 175400573 ACCTG------TGTACCT--------------------TACCCT----TCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904749 22 - 173848474 ACCTG------TGTACCT--------------------TACCCT----TCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423270 22 +   2807050 ACCTG------TGTACCT--------------------TACCCT----TCTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715876 22 - 122973662 ACCTG------TGTACCT--------------------TACCCT----TCTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676218 22 - 171630274 ACCTG------TGTACCT--------------------TACCCT----TCTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230000 22 +   1154217 ACTTG------TGTACCT--------------------TACCCT----TCTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049874 22 +  15232693 ACCTG------TGTACCT--------------------TACCCT----TCTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299470 22 +    446445 ACCTG------TGTACCT--------------------TACCCT----CCTG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15353024 40 -  18854210 --CTG------TGAGCCTTCTGCCTGAGGCAGCCAGTGTGTCTG----CCTG
i otoGar3.GL873550         C 0 I 34
s canFam3.chr12             70401501 38 -  72498081 -CCTGGTAAGCTGTACCTTCCAAGTCAGA---------TCCCCT----GTTG
i canFam3.chr12            C 0 I 60
s dasNov3.JH569424            508059 26 +    935526 GCCTC------TGAGCCT--------------------GACCTTGGCGTCTG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491278 119 + 123392446 I
e proCoq1.NW_012150019v1      161281 71 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=-2508.000000
s hg38.chr6_KI270758v1_alt     53843  3 +     76752 ----------------------------------------------------------------AGA
s panTro5.chr6             142757121  3 - 175400573 ----------------------------------------------------------------AGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904771  3 - 173848474 ----------------------------------------------------------------AGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423292  3 +   2807050 ----------------------------------------------------------------AGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715898  3 - 122973662 ----------------------------------------------------------------AGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676240  3 - 171630274 ----------------------------------------------------------------AGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230022  3 +   1154217 ----------------------------------------------------------------AGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049896  3 +  15232693 ----------------------------------------------------------------AGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299492  3 +    446445 ----------------------------------------------------------------AGA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      161352  3 +   1371726 ----------------------------------------------------------------AGA
i proCoq1.NW_012150019v1   I 71 C 0
s otoGar3.GL873550          15353098  3 -  18854210 ----------------------------------------------------------------AGA
i otoGar3.GL873550         I 34 C 0
s canFam3.chr12             70401599  3 -  72498081 ----------------------------------------------------------------AGA
i canFam3.chr12            I 60 C 0
s dasNov3.JH569424            508085 67 +    935526 ATCCCGGCTGCCGAGCTGCCTGCACCTCGAGGGCGGAAACCCTGCCCGGGGGCTCTCCGGCTGCGGA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491278 119 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=192925.000000
s hg38.chr6_KI270758v1_alt     53846 29 +     76752 TCAGGAAGTAAAGCCAGTGTTTGGGGCAG
s panTro5.chr6             142757124 29 - 175400573 TCAGGAAATCAAGCCAGTGTTTGGGGCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904774 29 - 173848474 TCAGGAAGTCAAGCCAGTGTTTGGGGCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423295 29 +   2807050 TCAGGAAGTAAAGCCAATGTTTGGGGCAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715901 29 - 122973662 TCAGGAAGCCAAGCTAGTGTTTGGGGCAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676243 29 - 171630274 TTAGGAGGTCAAGCTAGTGTTTGGGGCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230025 29 +   1154217 TTAGGAAGTCAAGCTAGTGTTTGGGGCAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049899 29 +  15232693 TTAGGAAGTCAAGCTAGTGTCTGGGGTAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299495 29 +    446445 TTAGGAAGTCAAGCTAGTGTTTGGGGCAG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4491397 29 + 123392446 TCAGGAAGCCAAGCCAGTGTTTGGGGCAG
i micMur3.chr6             I 119 I 79
s proCoq1.NW_012150019v1      161355 29 +   1371726 TCAGGAAGTCAAGCCAGTGTTTGGGGCAG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15353101 29 -  18854210 TCGGTAAGTCAAGCCAGTGTGTGGGGCAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70401602 29 -  72498081 CCAGAATGTCGAGCCAGTGTTTGGGGCAG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            508152 26 +    935526 TCAGAAAGCCTGGCTGGT---TGGGGCAG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=324293.000000
s hg38.chr6_KI270758v1_alt     53875 66 +     76752 GTTGACACAAG--TC--TGTCTCTCAAG-AAGGTTTTAGGAGAAGAGTCACTCCTCTGAGTTCTCTGAGAC------------
s panTro5.chr6             142757153 66 - 175400573 GTTGACACAAG--TC--TGTCTCTCAAG-AAGGTTTTAGGAGAAGAGTCACTCCTCTGAGTTCTCTGAGAC------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904803 66 - 173848474 GTTGACACAAG--TC--TGTCTCTCAAG-AAGGTTTTAGGAGAAGAGTCACTCCTCTGAGTTCTCTGAGAC------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423324 66 +   2807050 GTTGACACAAG--TC--TGTCTCTCAAG-AAGGTTTTAGGAGAAGAGTCATTCCTCTGAGTTCTCTGAGAC------------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715930 63 - 122973662 GTTGACACAAG--TC--TGTCTCTC----AAGGTTTTAGGGGAAGAGTCACTCCTCTGAGTTCTCTGAGAC------------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676272 66 - 171630274 GTTGACACAAG--TC--TGTCTCTCAAG-AAGGTTTTAGGAGAAGAGTCACTCCTCTGAGTTCTCTGAGAC------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230054 65 +   1154217 GTTGACACAAG--TC--TG-CTCTCAAG-AAGGTTTTAGGAGAAGAGTCACTCCTCTGAGTTCTCTGAGAC------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049928 66 +  15232693 GTTGACACAAG--TC--TGTCTCTCAAG-AAGGTTTTAGGAGAAGAGTCACTCCTCTGAGTTCTCTGAGAC------------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299524 66 +    446445 CTTGACACAAG--TC--TGTATCTCAAG-AAGGTTTTAGGAGAAGAGTCACTCCTCTGAGTTCTCTGAGAC------------
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      161384 68 +   1371726 GTTGACACACA--TCCGTGTCCCTCAAG-GAGATTTTCAGTGAGGAGTTGCTCCTCTGAGTTCTCTGAGAC------------
i proCoq1.NW_012150019v1   C 0 I 99
s otoGar3.GL873550          15353130 68 -  18854210 GCTGACACACA--TCTCTGTCCCTTACG-GAGATTTTCGGAGAAGAGTCACTCCTCTGAGTTCTCTTAGCT------------
i otoGar3.GL873550         C 0 I 12
s canFam3.chr12             70401631 65 -  72498081 GTGGACACATGGCTC--TGTCCCTCAGG-AAGACTTTAGGTGAAGAGTCA---CTCTGAGTTATTTGAACC------------
i canFam3.chr12            C 0 I 12
s dasNov3.JH569424            508178 79 +    935526 GGAGGCACAGG--CC--TCGGTCCAGAGCACGACCTTAGGTGGAGAGCCACTCCCCTGAGCCCTCCCGGCCAGCTCCACACAC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491426 79 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=20394.000000
s hg38.chr6_KI270758v1_alt     53941 4 +     76752 CCAC
s panTro5.chr6             142757219 4 - 175400573 CCAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904869 4 - 173848474 CCAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423390 4 +   2807050 CCAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715993 4 - 122973662 CCAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676338 4 - 171630274 CCAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230119 4 +   1154217 CCAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049994 4 +  15232693 CCAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299590 4 +    446445 CCAC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15353210 4 -  18854210 CCAT
i otoGar3.GL873550         I 12 C 0
s canFam3.chr12             70401708 4 -  72498081 CCAT
i canFam3.chr12            I 12 C 0
s dasNov3.JH569424            508257 4 +    935526 CTGC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491426 79 + 123392446 I
e proCoq1.NW_012150019v1      161452 99 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=230150.000000
s hg38.chr6_KI270758v1_alt     53945 47 +     76752 TGGAGACCCAGCACACAAAATACGACCCCATGTCCTGTTGTTCCTAA---
s panTro5.chr6             142757223 47 - 175400573 TGGAGACCCAGCACACACAATACGACCCCATGTCCTGTTGTTCCTAA---
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904873 47 - 173848474 TGGAGACCCAGCACACACAATACGACCCCATGTCCTGTTGTTCCTAA---
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423394 47 +   2807050 TGGAGACCCAGCACACACAATACGACCCCATGTCCTGTTGTTCCTAA---
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45715997 47 - 122973662 TGGAGACCCAGCACACAAAATACGACCCCATGTCCTGTTGTTCCTAA---
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676342 47 - 171630274 TGGAGACCCAGCACACAAAATACGACCCCTTGTTGTGTTGTTCCTAA---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230123 47 +   1154217 TGGAGACCCAACACACAAAATATGACCCCATGTTGTGTTGCTCCTAA---
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14049998 47 +  15232693 TGGAGACCCAGCACACAAAATATGACCCCATGTTGTGTTGTTCCTAA---
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299594 47 +    446445 TGGAGACCCAGCACACAAAATACGACCCCATGTTGTGTTGTTCCTAA---
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4491505 47 + 123392446 TGGAGACCCAGCACACAAAATACAGTCCCGTGTCCTGCCGTTCCTAA---
i micMur3.chr6             I 79 I 882
s otoGar3.GL873550          15353214 47 -  18854210 TGGAGACGCAGCACAGAATGTACAATCCCATGTCGTGTTGTTCCTAA---
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70401712 46 -  72498081 TGGAGACCCAGCATGCTAAGTACAATCTGATGTTGTGTTGTTCCTA----
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            508261 38 +    935526 CGGAGGCCCGGCA-AAGTAGCAGGATCC-----------GTCCCTGGCCT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      161452 99 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=125423.000000
s hg38.chr6_KI270758v1_alt     53992 36 +     76752 GTCATGGTAACC-TCCGGGGCCACAATTAACCAACAC
s panTro5.chr6             142757270 36 - 175400573 GTCATGGTAACC-TCTGGGGCCACAATTAACCAACAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904920 36 - 173848474 GTCATGGTAACC-TCTGGGGCCACAATTAACCAACAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423441 36 +   2807050 GTCATGGTAACC-TCCGGGGCCACAATTAACCAACAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45716044 37 - 122973662 GTCATGGTGACCTTCCGGGGCCACAATTAACCAAGGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676389 37 - 171630274 GTCATGCTGACCTTCTGGGGCCACAATTAACCAAGGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230170 37 +   1154217 GTCATGCTGACCTTCCGGGGCTACAATTAACCAAGGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14050045 37 +  15232693 GTCATGCTGACCTGCCGGGGCCACAATTAACCAAGGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299641 37 +    446445 GTCATGCTGACCTTCCGGGGCCACAATTAACCAAGGT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15353261 37 -  18854210 GTTCTGCTGACCTTCTGGGGCCACAATAAAACAGGGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70401758 37 -  72498081 GTTGTGCTGACCTTCTGGGACCACAGTAAAACATGAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            508299 25 +    935526 ------------TCCAGGCACCTCAATAAAAAGACAA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e proCoq1.NW_012150019v1      161452 99 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=190729.000000
s hg38.chr6_KI270758v1_alt     54028 33 +     76752 GGAAAGATGGAGCTTCCCTTTGCTTCCTGTCAG
s panTro5.chr6             142757306 33 - 175400573 GGAAAGATGGAGCTTCCCTTTGCTTCCTGTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904956 33 - 173848474 GGAAAGATGGAGCTTCCCTTTGCTTCCTGTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423477 33 +   2807050 GGAAAGATGGAGCTTCCCATTGCTTCCTGTCAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45716081 33 - 122973662 GGAAAGATGGAGCTTCCCTTTGCTTCCTGTCAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676426 33 - 171630274 GGAAAGATGGAGCTTCCCTTTGCTTCCCGTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230207 32 +   1154217 GGAAAGATGGAGCTT-CCTTTGCTTCCTGTCAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14050082 33 +  15232693 GGAAATATGGAGCTTCCCTTTGCTTCCTGTCAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299678 33 +    446445 GGAAAGATGGAGCTTCCCTTTGCTTCCTGTCAG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      161551 33 +   1371726 GGAAAGAAGGAGCTCCCCTTTGCTCCCTGTCAG
i proCoq1.NW_012150019v1   I 99 I 843
s otoGar3.GL873550          15353298 32 -  18854210 GGAAAGATGGAGCTTCCTTTTGCT-CCTGTCAG
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70401795 33 -  72498081 GAAAATATGGAGCTCCCCCTGGCTCCCTGTTGG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            508324 33 +    935526 GAAAAAAGACAGCTTCCCTTCGCGCCCTCTCAG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=107226.000000
s hg38.chr6_KI270758v1_alt     54061 27 +     76752 GTGGGAGA-GGAGGGCTCTGGGCACGGA
s panTro5.chr6             142757339 27 - 175400573 GTGGGAGA-GGAGGGCTCTGGGCACGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140904989 27 - 173848474 GTGGGAGA-GGAGGGCTCTGGGCACGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423510 27 +   2807050 GTGGGAGA-GGAGGGCTCTGGGCATGGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45716114 27 - 122973662 GTGGGAGA-GCAGGGCTCTGGGCACGGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676459 27 - 171630274 GTGGGCGA-GGAGGGCTCTGGGCACAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230239 27 +   1154217 GTGGGAGA-GGAGGACTCTGAGCACAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14050115 27 +  15232693 GTGGGAGA-GGAGGACTCTGGGCACAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299711 27 +    446445 GTGGGAGG-GGAGGGCTCTGGGCACAGA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15353331 26 -  18854210 GGAGGGGA-GGGGGGATGTGGCCCCGG-
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70401828 28 -  72498081 GTGGGGGATACAGGGCTGCGCCCTCAGG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            508357 26 +    935526 -GGGGGGA-GGAGGGCTGTGAGCACAAA
i dasNov3.JH569424         C 0 I 294
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e proCoq1.NW_012150019v1      161584 843 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=646353.000000
s hg38.chr6_KI270758v1_alt     54088 221 +     76752 AGCTTTGCAGGTGAGCTCTAATGAT-------------------------------------------------------------------------------------------------------------------------------------GGGACACCCAGCTCTCTATGGAAGTCCTA----------------------AGACTGAAA-------------------------------------------------------TCGCTGCTTGTAGTC---------------TTACAAATAATGTTTT------------------------------------TCA-T------------------TTATAAAAATAA----TAGTTTT-TAAAAATATTAattgtatgccaggcacgatgctgaatgtgttatgggaattatttca--ttttttcttacaataattataaagtttaattgctttatcctcatttt
s panTro5.chr6             142757366 221 - 175400573 AGCTTTGCAGGTAAGCTCTAATGAT-------------------------------------------------------------------------------------------------------------------------------------GGGACACCCAGCTCTCTATGGAAGTCCTA----------------------AGACTGAAA-------------------------------------------------------TCGCTGCTTGTAGTC---------------TTACAAATAATGTTTT------------------------------------TCA-T------------------TTATAAAAATAA----TAGTTTT-TTAAAATATTAattgtatgccaggcacgatgctgaatgtgttatgggaattatttca--ttttttcttacaataattataaagtttaattgctttatcctcatttt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140905016 221 - 173848474 AGCTTTGCAGGTAAGCTCTAATGAT-------------------------------------------------------------------------------------------------------------------------------------GGGACACCCAGCTCTCTATGGAAGTCCTA----------------------AGACTGAAA-------------------------------------------------------TCGCTGCTTGTAGTC---------------TTACAAATAATGTTTT------------------------------------TCA-T------------------TTATAAAAATAA----TAGTTTT-TTAAAATATTAattgtatgccaggcacgatgctgaatgtgttatgggaattatttca--ttttttcttacaataattataaagtttaattgctttatcctcatttt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423537 219 +   2807050 AGCTTTGCA-GTGAGCTCTAACGAT-------------------------------------------------------------------------------------------------------------------------------------GGGACACCCAGCTCTCTATGGAAGTCCTA----------------------AGACTGAAA-------------------------------------------------------TCGCTGCTTGTAGTC---------------TTACAAATAATG-TTT------------------------------------TCA-T------------------TTATAAAAATAA----TAGTTTT-TTAAAATATTAattgtatgccaggcacgatgctgaatgtgttatgggaattatttca--ttttttcttacaataattataaagtttaattgctttatcctcatttt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45716141 220 - 122973662 AGCTCTGCAGTTGCGCTCTGGTGAT-------------------------------------------------------------------------------------------------------------------------------------GGGACACCCAGCTCTCTATGGAAGTCCTA----------------------AGACTGAAA-------------------------------------------------------TCGCTGCTTGTACTC---------------TTACAAATAATGTTTT------------------------------------CCA-T------------------TTATAAAAATAA----TAGTTTT-T-AAAATATTAattgcatgccaggcatgatgctgaatgtgttatgggaattatttca--ttttttcttacaataattataaagtttaattgctttatcctcatttt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676486 225 - 171630274 AGCTCTGCAGGTGAGCTCTGGTGAT-------------------------------------------------------------------------------------------------------------------------------------GGGATACACCGCTCTCTATGGAAATCCTA----------------------AGACTGAAA-------------------------------------------------------TCCCTGCTCATACTC----------------TAGTAATAAGGTTTT------------------------------------TCA-T------------------TTATAAAGataatgattagtttt-ttgacatattaatcgtatgccaggcactatgccaaatgtgacacaggaattgtttca-tttttttcttacaatagttataaagtttaattgctttattctcatttt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230266 227 +   1154217 AGCTCTGCAGGTGAGCTCTGGTGAT-------------------------------------------------------------------------------------------------------------------------------------GGGACACACAGCTCTCTATGGAAATCCTA----------------------AGACTGAAA-------------------------------------------------------TCCCTGCTCATACTC----------------TAGTAATAATGTTTT------------------------------------TCA-T------------------TTATAAAaataatgattagttttcttgacatatcaattgtatgccaggcactaagccaaatgtgatacaggaattgtttcattttttttcttacaatagttataaagtttaattgctttatcctcatttt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14050142 226 +  15232693 AGCTCTGCAGGTGAGCTCTGGTGAT-------------------------------------------------------------------------------------------------------------------------------------GGGACACACAGCTCTCTATGGAAATCCTA----------------------AGACTGAAA-------------------------------------------------------TCCCTGCTCATACTC----------------TAGTAATAATGTTTT------------------------------------TCA-T------------------TTATAAAGataatgattagtttttttgacatattaattgtatgccaggcactatgccaaatgtgatacaggaattgtttca-tttttttcttacaatagttacaaagtttaattgctttatcctcatttt
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299738 225 +    446445 AGCTCTGCAGGTGAGCTC-GGTGAT-------------------------------------------------------------------------------------------------------------------------------------GGGACACACAGCTCTCTATGGAAATCCTA----------------------AGACTGAAA-------------------------------------------------------TCCCTGCTCATACTC----------------TAGTAATAATGTTTT------------------------------------TCA-T------------------TTATAAAGATAACGATTAGTttttttgacatattaattgtatgccaggcactatgccaaatgtgatacaggaattgtttca-tttttttcttataacagttataaagtttaattgctttatcctcatttt
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15353357 312 -  18854210 AGCTTTGCCAGGGAGCTGTGGCAATTGAGGAGCCCAG-------------------------------------GAACTC----------TTCAGCTGCCCCTGTCTTATGCTCACAAGTGATAGGCCCAGAGGAAGGGACCCCTGCAAGGAGCCACCAGGACACCCAGCCCTTTATGCAAATCCTG----------------------AGACAGGAA-------------------------------------------------------TCTCTGCTTCTACTC---------------TGGCAGATCATGTTAT------------------------------------TCATT------------------TTATAAAaataatgactagttttcttggaatattaattatatgccaggctcta-gctaagtactttgcaggaattctttta--ttttttcttacaatagttacaaagattggtagatttatcagcatttc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70401856 444 -  72498081 AGCTTTG------AGTGCTGTTGATTGAGGACACCAGGAGCTTCACAGATACCACTGTGTTAATCCATGAATTAGAACTCAAACACAAGGTCCCACTGCAGGTGGCTGCT------------------------------------------------GGCAGACTAAGCTTGCTGTAGAAGTCCCACTATGGCAAATAATCTCtttttaaatttaaattttaattagttaacatacagtgcaatattgatttctggagtagaattcagtgattcatcacttatatccaacacccagtgctcatcacaaaaaatgccttcctacatacctatcactcacctatcccatcccccactca-tctcTATCaaataatcttattataaaaataatgactaattta---aaaatattaattatatGCCTGGTGTGATGCTAAATGCTTTTCAGAGATTATTTCT----TTTTCTAACaataattat--tttttaatttttttGTTtttatttt
i canFam3.chr12            C 0 I 579
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e proCoq1.NW_012150019v1      161584 843 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            508383 294 +    935526 I

a score=463775.000000
s hg38.chr6_KI270758v1_alt     54309 144 +     76752 acagctaag-aaacaatcttagagacatacatggtttgccaaaaatcaggaagaaatggtgatgtttaccttctaatctacatctatctaactTAACAGTGCAAG-TCCTTAATTACTTAtgtgtgactttgtcagctcattcatc
s panTro5.chr6             142757587 144 - 175400573 acagctaag-aaacaatcttagagacatacatggtttgccaaaaatcaggaagaaatggtgatgtttaccttctaatctacatctatctaacttaacagtgcaag-tccttAATTACTTAtgtgtgactttgtcagctcattcatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140905237 144 - 173848474 acagctaag-aaacaatcttagagacatacatggtttgccaaaaatcaggaagaaatggtgatgtttaccttctaatctacatctatctaacttaacagtgcaag-tccttAATTACTTAtgtgtgactttgtcagctcattcatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423756 144 +   2807050 acagctaag-aaacaatcttagagacatacatggtttgccaaaaatcaggaagaaatggtgatgtttaccttctaatctacatctatctaacttaacagtgcaag-tccttAATTACTTAtgtgtgactttgtcagctcattcatc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45716361 142 - 122973662 acagctaag-aaacaatcttagagacatacatggtttgccaaaaatcatgaagaaatggtg--gtttaccttctaatctacatctatctaacttaagagtgcaag-tccttAATTACTTACgtgtgactttgtcagctcattcatc
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676711 143 - 171630274 acagctaag-aaaaaatcttagagacatatactgtttgccaaaaatcaGGAAGAAATGGTGAT-TTTGCCTTTCAATCTACATCTATCTAACCTAAGAGTGCAAG-TCCTTAATTACTTATGTGTGACTTTATCAGCTCATTCATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230493 144 +   1154217 acagctaag-aaaaaatcttagagacatatacggtttgccaaaaatcaGGAAGAAACGGTGATGTTTGCCTTTCAATCTACATCTATCTAACCTAAGAGTACAAG-TCCCTAATTACTTATGTGTGACTTTATCAGCTCATCCATG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14050368 145 +  15232693 acagctaagaaaaaaatcttagagacatatctgatttgccaaaaatcaggaagaaatggtgatgtttgccttccaatctacatctctctaacctaagagtgcaag-tccttaattactTATGTGTGACTTTATTGGCTCATTCATG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      299963 145 +    446445 acagctaagaaaaaaatcttggagacatatatgatttgccaaaaatcaggaagaaatggtgatgtttgccttccaatctacatctatctaacctaagagtgcaag-tccttAATTACTTAtgtgtgactttgtcagctcattcttc
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15353669 121 -  18854210 atagttagg-aagtagtctttgagaCATATGTGG-TTGCAGACAACCACAAAGAAATTGTGATATTTGCCTTGCAGTGAATGTCTACCTGACTTAACAGTGCAAGTTTCTTAATCATTTA-----------------------GTC
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e proCoq1.NW_012150019v1      161584 843 +   1371726 I
e canFam3.chr12             70402300 579 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            508383 294 +    935526 I

a score=1205477.000000
s hg38.chr6_KI270758v1_alt     54453 347 +     76752 tctatttttctcatctttaaagtgaa----caggttgaatttaatctctcatgtagtgtccagttctaaGAGATTAGATATAA---------------------------------------CTTagcatatttgagaaatgagatagtgcattaattgaatatgctgattgaaagaggattatgtggtatgatgatgagattatcaggtttcaaggaatcagtgtataattc-agtgtacttcacgctccagaagggaattaatttttcagtggata-ttcag--------aaggca-ttca-g-aaCATACaaacaataacc--aaaacaaaacaaagcaaTATATTTCAGCACAAAATTGTCTGGAAGGCTGTGTACAAAACCGTATagaaaaaggaggtt---a
s panTro5.chr6             142757731 345 - 175400573 tctatttttctcatctttaaagtgaa----caggttgaatttaatctctaatgtagtgtccagttctaaGAGATTTGATATAA---------------------------------------CTTagcatatttgagaaatgagatagtgcattaattgaatatgctgattgaaagaggattatgtggtatgatgatgatattatcaggtttcaaggaatcagtgtataattc-agtgtacttcacgctccagaagggaattaatttttcaatggata-ttcag--------aaggcatttca-g-aaCATACAAACAATAACC--GAAACAAAACAAAGCAATATATTTCAGCACAAAATTATCTGGAAGGCTGTGTACAAAACCGTatagaaaa---aggtt---a
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140905381 345 - 173848474 tctatttttctcatctttaaagtgaa----caggttgaatttaatctctaatgtagtgtccagttctaaGAGATTTGATATAA---------------------------------------CTTAGCATATTTGAGAAATGAGATAGTGCATTAATTGAATATGCTGATTGAAAGAGGATTATGTGGTATGATGATGATATTATCAGGTTTCAAGGAATCAGTGTATAATTC-AGTGTACTTCACGCTCCAGAAGGGAATTAATTTTTCAATGGATA-TTCAG--------AAGGCATTTCA-G-AACATACAAACAATAACC--GAAACCAAACAAAGCAATATATTTCAGCACAAAATTATCTGGAAGGCTGTGTACAAAACCGTatagaaaa---aggtt---a
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2423900 343 +   2807050 tctatttttctcatctttaaagtgaa----caggttgaatttaatctctaaggtagtgtccagttctaaGAGATTAGATATAA---------------------------------------CTTagcatatttgagaaatgagatagtgcattaattgaatatgctgattgaaagaggattatgtggtatgatgatgagattatcaggtttcaaggaatcagtatataattc-agtgtacttcacgctccagaagggaattaatttttcagtggata-ttcag--------aaggcatttca-g-aaCATACAAACAATAAC-------CAAAACAAAGCAATATATTTCAGCACAAAATTGTCTGGAAGGCTGTGTACAAAACCGTATagaaaaaggaggtt---a
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45716503 348 - 122973662 tctatttttctcatctttaaggtgaa----caggttgaatttaatctctaatgtagtgtccagttctaaGAGATTAGATATAA---------------------------------------CTTAGCATATTTGAGAAATGAGATAGTGCATTAATTGAATATGCTGATTGAAAGAGGATTATGTGGTATGATGATGAGATTATCAGGTTTCGCGGAATCAGTGTATAATTC-AGTGTACTTCACACTCCAGAAGGGAATTAATTTTTCAATGGATA-TTCAG--------AAGGCATTTCA-G-AACatacatacaataacc--aaaacaaaacaaagcaatacatttcagcacaaaaTTGTCTGGAAGGCTGTGTACAAAACCGTATAGATAAAGGAGGTT---A
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138676854 348 - 171630274 TCTATTTTTCTCATCTTTAAAGTGAA----CAGCTTGAATTTAATCTGTAATGTAGTGTCCAGTTCTAAGAGACTAGATATCA----------------------------------------TTAGCATATTTGAGAAATGAGGTAGTGCATTAATTGAATACACTGACTGAAAGAGGATTCTGTGGTTTGATGATGAGATTATCAGATTTCAAGGAATCGGTGCATAATTC-AGTGTATTTCACACTCCAGAAGGGATTTAATTTTTCAGCGGATA-TTCAG--------AAGGCATTTCA-G-AACATACACACAATAACC-AAAAACAAAACGAAGCAATACATTTCAGCACAAAACTGTCTGGAAGGTTGTGTACAAAACTGCATCGAAAA---AGGCTAGca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230637 351 +   1154217 TCTATTTTTCTCATCTTTAAAGTGAA----CAGGTAGAATTTCATCTGTAATGAAGTGTCCAGTTCTAAGAGACTAGATATAA----------------------------------------TTAGCATATTTGAGAAATGAGGTAGTGCATTAATTGAATACACTGATTGAAAGAGGATTGTGTGGTTTGATGATGAGATTATCAGGTTTCAAGGAATCAATGTATAATTC-AGTGTATTTCACACTCCAGAAGGGATTTAATTTTTCAGTGGATA-TTCAG--------AAAGCATTTCA-G-AACATACACACAGTAATC-AAAAACAAAACAAAACAATACATTTCAGCACAAAACTGTCTGGAAGGTTGTGTACAAAACTGCATAGAAAAAGGAGGTTAGca
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14050513 351 +  15232693 TCTATTTTTCTCATCTTTAAAGTGAA----CAGGTTGAATTTAATCTGTAATGTAGTGTCCAGTTCTAAGAGACTAGATATAA----------------------------------------TTAGCGTATTTGAGAAATGAGGTAGTGCATTAATTGAATATGATGATTGAAAGAGGATTATGT-GTTTGATGATGAGATTATCAGGTTTCAAGGAATCGGTGTATAATTCAAGTGTATTTCACACTCCAGAAGGGATTTAATTTTTCAGTGGATA-TTCAG--------GAGGCACTTca-g-aacatacacacaacaacc-aaaaacaaaacaaagcaatacatttcaacacaaaGTTGTCTGGAAGGTTGTGTACAAAACTGCATAGAAAAAGGAGGTTAGca
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      300108 335 +    446445 tctatttttctcatctttaaagtgaa----caggttgaatttaatctgtaat-tagtgtccagttctaaGAGACTAGATATAA----------------------------------------TTAGCATATTTGAGAAATGAGTTAGTGCATTAATTGAATATGCTGATTGAAAGAGGATTATGTGGTTTAATGATTAGATTATCAGGTTTCAAGAAATCGGTGTATAATTC-AGCATATTTCACACTCCAGAAGGGATTTAATTTTTCA----------------------AGGCATTTCA-G-AACAT--ACACAATAACC-AAAAACAGAACAAAGCAATACATTTCAGCACAAAGTTGTCTGGAAGGTCGTGTACAAAACTGCATCGAAAAAGGAGGTTAGca
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15353790 307 -  18854210 TCTATTTTTCTCATCTTATAAATGAA----TAGGTTGAATTTAACCTCTAATTTAGTTTGCAGTTCTCAGAGACTAGACAGAATAC----------------------------------AGTTTAGCATATTCAAGAAATGAGATAGTGCACTAATTGGATATGCTAATTGAAAGAGGGTTGTATGGAGTGACGACGAGA----------------------------------------TTCACACTCCAGAAGGAACTTAATTTCTTAGTGGATA-TGCAG--------AAAGCATTTTAGG-AACATACATACA-TACTC-AAAACCAAAACAAAACAATAAACCTGAGCACAAA-TCCTGTGGAAATCTGTGAACACAACTGTATACACAGGG----------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70402879 393 -  72498081 tctatttttaacttcttgag---gaacttccaTGTTTAATTTAATCTCTGATGTAGTGTCAGGCTCTAAAACTCTGgatatgatatgatatgatataattaatatattatataatataaaaatataGCATATTGAGGAAATGAGA-GCCATCTTAATTGAATATGCTGTTTGAAAGTGGATTATATGACATGATGATGAGATTATCAGGTTTCAAAGAATTGGTATATTATTC-AGCAAACTGCACACTCCAGAAAGGATTTAATTT-TCAGTGAATATTTCAGTAACATTCAGGGCACTTCA-GTAACATACATATAATACCCCCCAAATAAAACAAAACAATAAATGTGAGCACAAA-CTGTGTGGAAGGCTATGGATAAAAGTATCTAAAGAA----GATT---A
i canFam3.chr12            I 579 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e proCoq1.NW_012150019v1      161584 843 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            508383 294 +    935526 I

a score=531469.000000
s hg38.chr6_KI270758v1_alt     54800 176 +     76752 actactgcatgttcacacttataagggggagctgattggtgagaacacatggatgcatggcagggaacaacacacactggacacctgttgggggatg-ggggagggagagcatcaggaagaacagctaatggatgctgggcttaacacctgggtgatgggatgacctgtgcagtaag
s panTro5.chr6             142758076 176 - 175400573 actactgcatgtttacacttataagggggagctgattgatgagaacacatggatgcatggcagggaacaacacacactggacacctgttgggggatg-ggggagggagagcatcaggaagaacagctaatggatgctgggcttaacacctgggtgatgggatgacctgtgcagtaaG
i panTro5.chr6             C 0 I 7
s panPan2.chr6             140905726 176 - 173848474 actactgcatgtttacacttataagggggagctgattgatgagaacacatggatgcatggcagggaacaacacacactggacacctgttgggggatg-ggggagggagagcatcaggaagaacagctaatggatgctgggcttaacacctgggtgatgggatgacctgtgcagtaaG
i panPan2.chr6             C 0 I 7
s gorGor5.CYUI01000036v1     2424243 175 +   2807050 actactgcatgttcacacttataagggggagctgattgatgagaacacatggatgcatggcagagaacaacacacactggacacctgttgggggat--ggggagggagagcatcaggaagaacagctaatggatgctgggcttaacacctgggtgatgggatgacctgtgcagtaag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45716851 175 - 122973662 ACtactgcatgttcacacttataagtgggagctgattgatgagaacacatggatgcatggcagggaacaacacaca--ggacaccttttgggggatgtggggagggagagcatcaggaagaacagttaacggatgctgggcttaacacctgagtgatgggatgacctgtgcagtaag
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677202 176 - 171630274 actactgcatgttcacacttataagtgggagctgattgaagagaacacctggacacatggcagggaacagcacacactggacacctgttgtggggtggcgggagggagaggatcaggaagaagagctaacggatgctgggcttaacacctgggtgatggaatgacctgtgcagtaa-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            230988 177 +   1154217 actactgcatgttcacacttataagtgggagctgattgatgagaacacatggacacatggcagggaacaacacacactgggcacctgttgtggggtggagggagggagaggatcaggaagaagagctaacggatgctgggctgaacacctgggtgatggaatggcctgtgcagtaaa
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14050864 177 +  15232693 actactgcatgttcacacttataagtgggagctgattgatgagaacacatggagacatggcagggaacaacacacactggacacctgttgtggggtggagggagggagaggatcaggaagaatagctaacagatgctgggcttaacacctgggtgatggaacgacctgtgcagtaaa
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      300443 177 +    446445 actactgcatgttcacacttataagtgggagctgattgatgagaacacatggatacatggcagggaacaacacacactggacacctgttgtggggtggagggagggagaggatcaggaagaagagctaacggatgctgggcttaacacctgggtgatggaatgacctgtgcagtaaa
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e proCoq1.NW_012150019v1      161584 843 +   1371726 I
e canFam3.chr12             70403272   0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15354097   0 -  18854210 C
e dasNov3.JH569424            508383 294 +    935526 I

a score=91985.000000
s hg38.chr6_KI270758v1_alt     54976 54 +     76752 ccaccatggcacatgtttacctatgtaacaaacctgcacatcctgcacatgtac
s gorGor5.CYUI01000036v1     2424418 54 +   2807050 ccaccatggcacacgtttacctatgtaacaaacctgcacatcttgcacatgtac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717026 54 - 122973662 ccaccatggcacacgtttacctatgtaacaaacctgcacatcctgcacatgtac
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677378 51 - 171630274 --accatggcacacgtttacctatgtaacagacctgcacttcctacacgtgta-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231165 54 +   1154217 ccaccatggcacacgttcacctgtgtaacagacctgcacttcctgcacgcgtac
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051041 54 +  15232693 ccaccatggcacacgtttacctatgtaacagacctgcacttcctgcacgtgtat
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      300620 54 +    446445 ccaccgtggcacacgtttacctatgtaacaaacctgcacttcctgcacatgtac
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e proCoq1.NW_012150019v1      161584 843 +   1371726 I
e canFam3.chr12             70403272  0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15354097  0 -  18854210 C
e dasNov3.JH569424            508383 294 +    935526 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=34330.000000
s hg38.chr6_KI270758v1_alt     55030 32 +     76752 cccggaacttaaaattgaaagaaaaaaaaAGT
s gorGor5.CYUI01000036v1     2424472 32 +   2807050 cccggaacttaaaattgaaagaaaaaaaaAGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717080 31 - 122973662 cccggaacttaaaattgaaag-aaaaaaaaGC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677429 30 - 171630274 ccctgaacttaaaa--gatgaagaaaaaaaGt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231219 30 +   1154217 ccctgaacttaaaa--ggtgaagaaaaaaaGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051095 30 +  15232693 ccctgaacttaaaa--gatgaagaaaaaaaGt
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      300674 30 +    446445 ccctgaacttaaaa--gatggagaaaaaaaGt
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70403272 11 -  72498081 TTCAGAGCTTA---------------------
i canFam3.chr12            C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e proCoq1.NW_012150019v1      161584 843 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15354097  0 -  18854210 C
e dasNov3.JH569424            508383 294 +    935526 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=26433.000000
s hg38.chr6_KI270758v1_alt     55062 15 +     76752 GGGTTAGGCATAGTG
s gorGor5.CYUI01000036v1     2424504 15 +   2807050 GGGTTAGGCATAGTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717111 15 - 122973662 GGGTTAGGCATAGCG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677459 15 - 171630274 gagttagacatagtg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231249 15 +   1154217 TAGTTAGACATAGTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051125 15 +  15232693 gagttagacatagcg
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      300704 15 +    446445 gagttagacatagtg
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15354097 15 -  18854210 GGATTATGCGGAGCT
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e proCoq1.NW_012150019v1      161584 843 +   1371726 I
e canFam3.chr12             70403283  0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            508383 294 +    935526 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=3600.000000
s hg38.chr6_KI270758v1_alt     55077 1 +     76752 G
s gorGor5.CYUI01000036v1     2424519 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717126 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677474 1 - 171630274 g
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231264 1 +   1154217 G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051140 1 +  15232693 g
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      300719 1 +    446445 g
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      162427 1 +   1371726 g
i proCoq1.NW_012150019v1   I 843 C 0
s otoGar3.GL873550          15354112 1 -  18854210 G
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4491552 882 + 123392446 I
e canFam3.chr12             70403283 0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            508383 294 +    935526 I
e panPan2.chr6             140905902 7 - 173848474 I
e panTro5.chr6             142758252 7 - 175400573 I

a score=187399.000000
s hg38.chr6_KI270758v1_alt     55078 46 +     76752 CTCCCAAGGAGCTTGTATTCTAGTAGAACATCAATTATTAACAAAC
s gorGor5.CYUI01000036v1     2424520 45 +   2807050 CTCC-AAGGAGCTTGTATTCTAGTAGAACATCAATTATTAACAAAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717127 46 - 122973662 CTCCCAGGGAACTCATATTCTAGTAGAACATCAATTACTAACAAAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677475 46 - 171630274 ctcccaaggagctcatattctagtagaACATCAATTATTAACAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231265 46 +   1154217 CTCCCAAGCAGCTCATATTCTAGTAGAACATCAGTTATTAACAAAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051141 46 +  15232693 ctcccaaggagctcatattctagtagaACATCAATTATTAACAAAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      300720 46 +    446445 ctcccaaggagctcatattctagtagCACATCAATTATTAACAAAC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4492434 46 + 123392446 CTCCCAAGGGGCTCATATTCTAGTAGAACATCAATTATTAGCAAAC
i micMur3.chr6             I 882 C 0
s proCoq1.NW_012150019v1      162428 46 +   1371726 ctctcaaggagctcatattctagtagaacatcaattactaacaaac
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15354113 45 -  18854210 CTGTC-AGGAGCTCATATCCTCGTAGAACATCAGCTATTAATAAAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70403283 45 -  72498081 -TCTCAAGGAGCTTGTATTCTAGTAGAATATCAATTTTTAGCAGAT
i canFam3.chr12            C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            508383 294 +    935526 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=272238.000000
s hg38.chr6_KI270758v1_alt     55124 87 +     76752 AGGGCTGCGTGATTTTTTTA--GCACTTTAAACTTTAGTTT-TACTTGGATTCTGGACAAA-AGGAGTTTTGTCTGTATCTGTAATGCATC
s gorGor5.CYUI01000036v1     2424565 87 +   2807050 AGGGCTGCGTGATTTTTTTA--GCACTTTAAACTTTAGTTT-TACTTGGATTCTGGACAAA-AGGAGTTTTGTCTGTATCTGTAATGCATC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717173 87 - 122973662 AGGGCTGCGTGATTTTTCTA--GCACTTTAAACTTTAGTTT-TACTTGGATTCTGGACAAA-AGGAGTTTTGTCGGTATCTGTAATGCATC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677521 74 - 171630274 AGGGCTGCATCATTTTTCCA--GTACTTTAAACTTCAGTTT-TACT-------TGGACAAA-AGGAATTTTGG------CTATAATGCATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231311 80 +   1154217 AGGGCTGCATAGTTTTTCTA--ATACTTTAAACTTCAGTTT-TACT-------TGGACAAA-AGGAATTGTGGCTATATCTATAATGCATC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051187 87 +  15232693 AGGGCTGCATAATTTTTCTA--GTACTTTAAACTTCAGTTT-TACTTGGATACTGGACAAA-AGGAACTTTGGCTATATTTATAATGCATC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      300766 80 +    446445 AGGGCTGCATAATTTTTCTA--GTACTTTAAACTTCAGTTT-TACT-------TGGACAGA-AGAAATTTTGGCTATATCTATAATGCATC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4492480 86 + 123392446 AAGGCTGCAGGATTTGTCTA--GTACTTTAAACTTTAGTTT-TACTTGGATTCTGGAAAAACAGGAATTTTGTC--TAACTATAATATATC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      162474 86 +   1371726 aaGGCTGCAGGATTTGTCTA--GTACTTTAAACTTTAGATT-TACTTGGATTCTGGAAAAACAGGAATTTTGTC--TAACTATAATGTATC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15354158 71 -  18854210 AAGGTTGCGGGATTTATCTA--GTACCTTCAACTTTATATT-TTCTTAGATTCTGGGAAAACAGGAATTTTT-----------------TC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70403328 89 -  72498081 TGAGTTGCATGATTTTTTTCCTGTACCTTAAACTTTATTTTCTACTTGAATTCTGAAATAACAGAAGTTTCATA--TATCTATAATGCATC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            508677 85 +    935526 AGGATTGCATGATTTATCTA--GATCTTTACACTAT-TTTT-AACTTGGATTCTGGAAAAACAGGAGTTTCATA--TATCTATCATGTACC
i dasNov3.JH569424         I 294 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=107040.000000
s hg38.chr6_KI270758v1_alt     55211 32 +     76752 AAATTAATTGAATCTCCATACTTACATTTTGC
s gorGor5.CYUI01000036v1     2424652 31 +   2807050 AAATTAATTGAAT-TCCATACTTACATTTTGC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717260 32 - 122973662 AAATTAATTGAATCTCCATACTTACGTTTTGC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677595 32 - 171630274 AAATTAACTGAATCTCTATACTTATATTTCGC
i calJac3.chr4             C 0 I 12
s saiBol1.JH378315            231391 32 +   1154217 AAATTAATTGAATCTGTATACTTATATTTTGC
i saiBol1.JH378315         C 0 I 12
s cebCap1.NW_016107339v1    14051274 32 +  15232693 AAATTAATTGAATCTCCATACTTATATTTTGC
i cebCap1.NW_016107339v1   C 0 I 23
s aotNan1.NW_018508875v1      300846 32 +    446445 AAATTAATTGAATCTCTATACTTGTATTTTGC
i aotNan1.NW_018508875v1   C 0 I 23
s micMur3.chr6               4492566 31 + 123392446 TAATTAGTTGAATCTCCACACTCT-ATTTTGC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      162560 31 +   1371726 TAATTAATTGAATCTCCACACTCT-ATTTTGC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15354229 32 -  18854210 TAATTAATTGAATCTCCATACTTTCATTTTGC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            508762 32 +    935526 TAATTAATAAAACAGCCATTCTTACAGTTTGC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e canFam3.chr12             70403417  0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=8257.000000
s hg38.chr6_KI270758v1_alt     55243 4 +     76752 TTCC
s gorGor5.CYUI01000036v1     2424683 4 +   2807050 TTCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717292 4 - 122973662 TTCC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677639 4 - 171630274 TTGC
i calJac3.chr4             I 12 I 7
s saiBol1.JH378315            231435 4 +   1154217 TTAC
i saiBol1.JH378315         I 12 I 7
s micMur3.chr6               4492597 4 + 123392446 TTCC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      162591 4 +   1371726 TTCC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15354261 4 -  18854210 TCTC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            508794 4 +    935526 TTTC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14051306 23 +  15232693 I
e aotNan1.NW_018508875v1      300878 23 +    446445 I
e canFam3.chr12             70403417 0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902 7 - 173848474 I
e panTro5.chr6             142758252 7 - 175400573 I

a score=396231.000000
s hg38.chr6_KI270758v1_alt     55247 108 +     76752 TTCAGTCTCCATTGAAGTCAATTTTAGCT--CTTAATTACCTATGTCAGGCAGGGCAAGCCAGTTTAAGATCTAATATGTGC-ACAGGTCACGCACGGACAGGGAATAAAA
s gorGor5.CYUI01000036v1     2424687 109 +   2807050 TTCAGTCTCCATTGAAGTCAATTTTAGCT--CTTAATTACCTATGTCAggcagggcaagccagtttaagatctaatatgtgccacaggtcacgcacggacagggaataaaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717296 105 - 122973662 TTCAGTCTCCATTGAAGTCAATCTTAGCT--CTTAATTACCTATGTCCGGCAGGGCAAGCCAGTTTAAGATCTGATATGTGCCACAGGT----CACGGACAGGGAATAAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677650 105 - 171630274 TTTAGTCTCCACTGAAGTCCACTTTAACT--CTTAATTACCTACGTCAAGCAGGGCAAGCCAGTTTAAGATCTGATATGTGCCACAGGT----CACGGACAGGGAATAAAA
i calJac3.chr4             I 7 C 0
s saiBol1.JH378315            231446 105 +   1154217 TTTAGTCTCCATTGAAGTCCATTTTAGCT--CTTAATTACCTGTGTCAGGCAGGGCAAGCCACTTTAAGATCTGATATGTGCCACAGGT----CACAGACAGGGAATAAAA
i saiBol1.JH378315         I 7 C 0
s cebCap1.NW_016107339v1    14051329 105 +  15232693 TTTAGTCTCCATTGAAGTCCATTTTAACT--CTTAATTACCTATGTCAGGCAGAGCAAGCCAGTTTAAGATCTGATATGTGCCACAGGT----CACAGACAGGGAATAAAA
i cebCap1.NW_016107339v1   I 23 C 0
s aotNan1.NW_018508875v1      300901 105 +    446445 TTTAGTCTCCATTGAAGTCCATTTTAGCT--CTTAATTACCTATGTCAGGCAGGGCAAGCCAGTTTAAGATCTGATCTGTGCCACAGGT----CACGGACAGGGAATAAAA
i aotNan1.NW_018508875v1   I 23 C 0
s micMur3.chr6               4492601 105 + 123392446 TTTAGTCTCCATTAAAGTCAATTTTAGCC--TTCAATTACCTATATCTAGCAGGGCAGGCCAATTTGAGATTAGATATATGCCACAGGT----CATGGACAGGAGGGAAAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      162595 105 +   1371726 TTTAGTCTCCATTAAAATCAATTGTAGCT--CTTAATTACCTATGTCTAGCAGGGCAGGTCAATTTGAGATAGGATATCTGCCACAGGT----CATGGACAGGGAAGAAAA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15354265 104 -  18854210 TTTAGTCTCCATTAAAGTCGATTTTAGCT--CATGATTACCTATGTCTATCAGGGCAGGGCAATTTCAGATGTGATATATGGCACAGGT----CAGGGA-AGGGAAGAAAA
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            508798 107 +    935526 TTAAGTCCATATTAAAAGCCATTTTAATTTACCTGGTTACCCATGTCTGGCAAGGTAAACCAGTTTGAGATTTGATATGTACCACAGGT----CAGGGACCGGGGAGAAAA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e canFam3.chr12             70403417   0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=266555.000000
s hg38.chr6_KI270758v1_alt     55355 64 +     76752 TCCTCA-TATGGATAAAGGAGATGAGGAAACAGTCTGTTTTATTAAGTAATTTACCGTAAGCCAT
s gorGor5.CYUI01000036v1     2424796 64 +   2807050 tcctca-tatggataaaggagaTGAGGAAACAGTCTGTTTTATTAAGTAATTTACCGTAAGCCAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717401 64 - 122973662 TCCTCA-TATGGATAAAGGAGATGAGGAAACAGTCTGTTTTATTAAGTAATTTACCATAAGACAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677755 64 - 171630274 CCCTCA-TATGGATAAAGAAGATGAGGAAACAGTCTGTTTTATTAAGTAATTTACTGTAAGACAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231551 64 +   1154217 CCCTCA-TATGAATAAAGAAGATGAGGAAACAGTCTGTTTTATTACGTAATTTACTGTAAGACAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051434 64 +  15232693 CCCTCA-TATGGATAAAGAAGATGAGGAAACAGTCTGTTTTATTAAGTAATTTACTGTAAGACAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      301006 64 +    446445 CCCTCA-TATGGATAAAGAAGATGAGGAAACAGTCTGTTTTATTAAGTAATTTACTGTAAGACAT
i aotNan1.NW_018508875v1   C 0 I 6
s micMur3.chr6               4492706 64 + 123392446 TCCTCAATACGGGT-ACAGAGATGAAGAAACAGTGTGTTTTATTAAGTAATTTCCTGTAAGACAT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      162700 62 +   1371726 TCCTCAGTACGGGT---AGAGATGAAGAAACAGTGTGTTTTATTAAGTAATTTCCTGTAAGACAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15354369 61 -  18854210 TCCTC--CTGGGGTGACAGAGTTGAAGAAACA-TCTGTTTTATTAAGTGATTTCCCGT-AGACAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70403417 64 -  72498081 TACTTA-TATGGGTGATGGAGATTAGGAAATTGTCTATTTTACTAAGTAATTTACTGTAAAATAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            508905 64 +    935526 TCCTCG-TGTAGGTAATGGAGATGAGGAAACAGTCTGATTTATTAAGTAATTTACTTTAAGACAT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=47422.000000
s hg38.chr6_KI270758v1_alt     55419 12 +     76752 GTGGATGGAGAA
s gorGor5.CYUI01000036v1     2424860 12 +   2807050 GTGGATGGAGAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717465 12 - 122973662 GTGGATGGAGAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677819 12 - 171630274 GTGGATGGAGAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231615 12 +   1154217 GTGGATGGAGAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051498 12 +  15232693 GTGGATGGAGAA
i cebCap1.NW_016107339v1   C 0 C 0
s micMur3.chr6               4492770 12 + 123392446 ATAGCTGGAGAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      162762 12 +   1371726 ATAGCTGGAGAA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15354430 12 -  18854210 ATAGCTGGAGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70403481 12 -  72498081 ATGGAAGGAGAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            508969 12 +    935526 CTGGATGGAGAA
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e aotNan1.NW_018508875v1      301070  6 +    446445 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=136370.000000
s hg38.chr6_KI270758v1_alt     55431 31 +     76752 ACAGCCCCAAACTAATCCCTAGTCCA--TTTTT
s gorGor5.CYUI01000036v1     2424872 31 +   2807050 ACAGCCCCAAACTAATCCCTAGTCCA--TTTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717477 31 - 122973662 ACAGCCCCAAACTAATCCCTAGTCCA--TTTTT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677831 31 - 171630274 ACAGCCCCAAACTAACCCCTAGTCCA--TTTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231627 31 +   1154217 ACAGCCCCAAACTAATCCCTAGTCCA--TTTTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051510 33 +  15232693 ACAGCCCCAAACTAATCCCTAGTCCATTTTTTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      301076 31 +    446445 ACAGCCCCAAACTCATCCCTAGTCCA--TTTTT
i aotNan1.NW_018508875v1   I 6 C 0
s micMur3.chr6               4492782 31 + 123392446 ATAGCAGCAAACTAATCCCCAGTTCA--TTTTT
i micMur3.chr6             C 0 I 4851
s proCoq1.NW_012150019v1      162774 31 +   1371726 ATAGCAGCAAACTAATCCCCAGTTCA--TTTTC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15354442 28 -  18854210 AT---AGCAAACTAATCCCTAGTTTA--TTTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70403493 31 -  72498081 ATAGCAGCAGACTAATCCCTAGTTGA--ATTTT
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            508981 31 +    935526 ATAGCAACAAACTAATTCCTAACCCA--TTTTT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=147152.000000
s hg38.chr6_KI270758v1_alt     55462 45 +     76752 TCTGATTCTTG------TCTTCAGACTTTAATAGATACATAGGAGAGGAAA
s gorGor5.CYUI01000036v1     2424903 45 +   2807050 TCTGATTCTTG------TCTTCAGACTTTAATAGATACATAGGAGAGGAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717508 45 - 122973662 TCTGATTCTTG------TCTTCAGACTTTAATAGATACATAGGAGAGGAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677862 45 - 171630274 TCTGATTCTTG------TCTTCAGGTTCTAATAGGTACATAGGGGAGGAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231658 45 +   1154217 TCTGATTCTTA------TCTTCAGACTTTAATAGTTACATAGGGGAGGAAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051543 45 +  15232693 TCTGATTCTTA------TCTTCAGACTTTAATAGATACATAGGGGAGGAAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      301107 45 +    446445 TCTGATTCTTA------TCTTCAGACTTTAATAGATACATAGGGGAGGAAG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      162805 51 +   1371726 TCTGATCCTTACACTTATCTTCAGATTTTAACAGATATATAGGGAAAGGAG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15354470 45 -  18854210 TCTGAGCCTTGTATTTATCTTCAGATTTTAACAGAT------GAAAAGGAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70403525 51 -  72498081 TCTGAATCCTACTTTCATCTTCAGATTTTAATGGATACATTTGCAATGGAG
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            509012 51 +    935526 TCTGACTCCTACTTTTGTCCTCTGATTTTAACAGATACATAAGGCATGGAG
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4492813 4851 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=993490.000000
s hg38.chr6_KI270758v1_alt     55507 272 +     76752 ATAATATTGTTTTAGGTAAAATTACAGGACAAAGCAAACAAAATGCTGGAAATAACTGGGAGTCAAC------TGTTACCTGGAATGGAAGGTAATAATCTGAAAATTCAAATTGTGTTGACAGGGACTTTCCTCTCTACAAAGG-TAGCTGGC-AGTTTTCGGCCAATGACATAATGGG-ATGTTAACGCCTTTGGCC------AGTGACTCTATGCA-GAGAACCAACAATTTTATGCTTGTGTTTCTATTATAAATGATCACACCTTATGC--AAAACCATTCTTAT
s gorGor5.CYUI01000036v1     2424948 272 +   2807050 ATAATATTGTTTTAGGTAAAATTACAGGACAAAGCAAACAAAATGCTGGAAATAACTGGGAGTCAAC------TGTTACCTGGAATGGAAGGTAATAATCTGAAAATTCAGATTGTGTTGACAGGGACTTTCCTCTCTACAAAGG-TAGCTGGC-AGTTTTCGGCCAATGACATAATGGG-ATGTTAACGCCTTTGGCC------AGTGACTCTATGCA-GAGAACCAACAATTTTATGCTTGTGTTTCTATTATAAATGATCACACCTTATGC--AAAACCATTCTTAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717553 272 - 122973662 ATAACATTGTTTTAGGCAAAATTACAGGACAAAGCAAACAAAATGCTGAAAATAACTGGGAGTCAAC------TATTACCTGGAATGGAAGGTAATAATCTGAAAATTCAAATTGTGTTGACAGTGACTTTCCTCTCTACAAAGG-TAGCTGGC-GGTTTTTGGCCAATGACATAATGGG-ACGTTAACGCCTTTGGCC------AGTGACTCTGTGCA-GAGAACCTACAATTTTATGCTTGTGTTTCTATTATAAATGATCACACCTTATGC--AAAACCATTCTTAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138677907 272 - 171630274 ATAATATCGTTTTAGGTAAAATTACAGGACAAAGCAAACAAAATGCTGGAAATAACTGGGAGTCAAA------TATTACCTGGAATAGAAGGTAATAATCTGAAAATTAGAATTGAGTTAACAGTGATTTTCCTCTCTACAAAGG-TAGCTGGC-AGTTTTCGGCCAATGATGTAATGGG-CTGTTAACGCCTTTGGCC------AGTGACTCCCTGCA-GAGAACCTACAATTTGGTGCTTGTGTTTCTATTATAAATGATCACAACTTATGC--AAAACCATTCTTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231703 272 +   1154217 ATAATATTGTTTTAGGTTAAATTACAGGACAAAGCAAACAAAATGCTAGAAATAACTGGGAGTCAAA------TATTACCTGGAATAGAAGGTAATAATCTGAAAATCAGAATTGAGTTAACAGTGATTTTCCTCTCTACAAAGA-TAGCTGGC-AGTTTTCAGCCAATAACATAATGGG-ATGTTAACGCCTTTGGCC------AGTGACTCCATGCA-GAGAACCTACAATCTGATGCTTGTGTTTCTATTATAAATGATCACAACTTATGC--AAAACCATTTTTAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051588 204 +  15232693 ATAATATTGTTTTAGGTAAAATTACAGGACAAAGCAAACAAAATGCTGGAAGTAACTGGGAGGCAAA------TATTACCTGA---------------------------------------AGTGATTTTCCTCTCTACAAAGG-TAGCTGGC-AGTTTTCGGCCAATAACGTAATGGG-ATGTTAATG-----------------------------------CCTACAATTTGATGCTTGTGTTTCTA-TATAAAGTATCACAATTTATGC--AAAACCATTCTTAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      301152 272 +    446445 ATAATATTGTTTTAGGTGAAATTACAGGACAAAGCAAACAAAATGCTAGAAATAACTGGGAGTCAAA------TATTACCTGGAATAGAAGGTAATAATCTGAAAATCAGAATTGAGTTAACGGTGATTTTCCTCTCTACAAAAG-TAGCTGGC-AGTTTTCAGCCAATAATATAATGGG-ATGTTAATGCCTTTGTCC------AGTGACTCCATGCA-GAGAACCTACAATTTGGTGCTTGTGTTTCTATTATAAATGATCACAACTTATGC--AAAACCATTCTTAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4497664 279 + 123392446 ATAATAATGTTTCAGGTAAAATTTCAGGACAAAGCAAACAAAATGCTGGAAGTAATTGGGAGTCAAA-ATTATTAACAGCTAAAATAGAAGGAAGTAATCTAAAAATTAGAATTGTGTTAATAGTGACCTTCCTCTCTAGACAGG-TATGTAGCGGGTTTTTGGCCAGTGACATGATGGGAATGTTATGGCCTTTGGCC------ATTGACTCCAAGCA-GAATACCTACAATTTTATGCCTGTATTTCTATTATAAGTGATCACAGCAAATGC--AAAACCATTCTTAT
i micMur3.chr6             I 4851 I 990
s proCoq1.NW_012150019v1      162856 280 +   1371726 ATAATATTGTTTTAGGTAAAATTGCAGGACAAAGTAAACAAAATGCCGGAAGTAATTGGGAGTCAAATATTATTAATAACCAAAATAGAAGGGAGTAATCTGAAAATTAGAACTGTGTTGATAGTGACCTTCCTCTCTAGAAAGG-TACCGAGC-AGTTTTTGACCAGTGCCATGATGGGAATGTTAT-GCCTTTGGCT------GTTGACTCCATGCA-GAAAACCTACAATTTTATTCCTGTTTTTCTATTATAAGTGATCACAGCACATGCAAAAAACCATTCTTAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15354515 272 -  18854210 ATAATATTATTTTAGGTAAAATTGCAGGACAAAGCAAACAAAATGCTGCAAGTAGTTGGGAGTCACA------TATTAGCTAGACTAGAAGGAAGTAATCTGAAAATTAGAATTGTGTTGATGGGGACTTTCCTCACTAGAAAGG-TACCTAGC-AACTTTTGGCCAGTGACATGATAGATATGTTAT-GCCTTTGGCC------ATTGACTCCACCCA-GAAAACCTGCCATTTTATGCTTTTATTTCTATTACAAATGATCATAACACGTGC--AAAATCATTCTTAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70403576 251 -  72498081 ---ATATTGTTTTATGTAAAATTGAAAGATAAAGCAAACAAAATGCTGGAAATAGTTGGGAGTCAAA------TTTTAGCTAGAATAGAAGGGAATAATCTGAAAATTAATATTGTGT-------AAGTTTTCTTTCTAAAGAAG-TACCTAGC-AGATTTTATCTAATTAC---------ATTTT---CTCTTTGGTC------ATTGACTCCCATGT-AACAATATACAAATTTATGCCCATATACCTATTAGAAATTATCATAACCTATGT--GAAAGCATTTTTAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            509063 277 +    935526 ATAATA-TATTTTAGGTAAAATTGAAGAACAAAGTGAACACAGTGTTGGGAATAACTGGGAATCTAA------TTTTAGCGTGTATTGAATGGAATAATCTGAAAATTAGAATTGTGTGAGCAGCAAGTGCCCTCTCTAGAGAGGTTCCCCAGC-AAATTCTGGCCAATGGCATGATTGTGACATTAA-GCCTTCAGGCTTGTATGTTGACTCTCTGTGTGTGATTCTGTGATTTTATGCCTGAATTTCTCTTATAAATGATCATAG--AATGT--GAAAGTATACTTAC
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=993822.000000
s hg38.chr6_KI270758v1_alt     55779 336 +     76752 CATTTAATAGAAAAGG----ACGACACTTAATTTAGAATAGAGAAAAAATTAGCATGGGCAGGGCCTGATGAGAATGGAAAATGTAACATAGCTT-GGGCCCAGGAAAGCCCTCAGAGAACATCTTTCCCCACTTTGCACAGTGGGAGAATTAGACCCCTTTTTTACATTCATCATTGTTTCACAATTTGTACTTTGCCG--ACTTCCCCAATTATTGATCTTAAAATGTTAATTTTAATTTTCAAAATTATT-TGAGGACATTCAA-CTGGTGTGTGTCTGTAACTCCACCTATGTGGAGCATTGGGGAAATAAAATATAGCGGCTGGACCAGACTTACAAGGT-
s gorGor5.CYUI01000036v1     2425220 336 +   2807050 CATTTAATAGAAAAGG----ACGACACTTAATTTAGAATAGAGAAAAAAATGGCATGGGCAGGGCCTGATGAGAATGGAAAATGTAACATAGCTT-GGGCCCAGGAAAGCCCTCAGAGAACATCTTTCCCCACTTTGCACAGTGGGAGAATTAGACCCCTTTTTTACATTCATCATTGTTTCACAATTTGTACTTTGCCG--ACTTCCCCAATTATTGATCTTAAAATGTTAATTTTAATTTTCAAAATTATT-TGAGGACATTCAA-CTGGTGTGTGTCTGTAACTCCACCTATGTGGAGCATTGGGGAAATAAAATATAGTGGCTGGACCAGACTTACAAGGT-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45717825 335 - 122973662 CATTTAATAGAAAAGG----ACGACACTTAATTTAGAATAGAG-AAAAATTGGCATGGGCAGGGCCTGATGAGAATGGAAAATGTAACATAACTC-GGGCCCAGGAAAGCCCTCAGAGAACATCTTTCCCCACTTGGCACAGTGGGAGAATTAGACCCCTTTTCTACATTCATCATTGTTTCACAATTTGTACTTTGCCG--ACTTCCCCAATTATTGATCTTAAAATGTTAATCTTAATTTTCAAAATCATT-TGAGGACATTCAA-CTGGTGTGTGTCTATAACTCCACCCATGTGGAGCATTGGGGAAATAAAATATAGTGGCTGGACCAGACTTACAAGGT-
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138678179 333 - 171630274 CATTTAACAGGAAAAG----ATGACACTTAATTTAGAAAAGAG-AAAAATTGGCATGGGCA-GGCCTGATGAGAATGG-GAATGTATCATAGCTT-GGGTCCAGGAAGGCCCTCAGAGAGCATCTTTCCCCACCTTGCACAGTGGGAGAATTAGAACCCTTTTTCACATTCCTCATTGTTTCACAATTTGTATTTTGCCA--ACCTTCCCAATTCTTGATCTTAAAATGTTAATCTTAATTTTCAAAATTATTCTGAGGACATTCAA-TTGGCATATGTCTATAACTCCA-CTATGTAGAACATTGGGGAAATAAAATCTAGTGGCGGGACCAGACTTACAAGGT-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            231975 333 +   1154217 CATTTAATAGAAAAAG----ACGACACTTAATTTAGAATAGAG-AAAAACTGGCATGGGCA-GGCCTGATGAGAATGA-AAATGTAACATAGCTT-GGGTCCAGGAAGGCCCTCAGAGAGCATCTTTCCCCACCTTGCACAATGGGAGAATTAGAACCCTTTTTCACATTCCTCATTGTTTCGCAATTTGTATTTTGCCA--GCCTTCCCAATTCTTGATCTTAAAATGTTAATCTTAATTTTCAAAATTATTCTGAGGACTTTCAG-TTGGCATGTGTCTATAACTCCA-CTATGTAGAACATTGGAGAAATAAAATTTAGTGGCTGGACCAGACTTACAAGGT-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14051792 333 +  15232693 CATTTAATAGAAAAAG----ACAGCACTTAATTTAGAATAGAG-AAAAATTGGCATGGGCA-GGCCCGATGAGAATGG-AAATGTAACATAGCTT-GGGTCCAGGAAGGCCCTCAGAGAGCATCTTTCCCCACCTTGCACAGTGGGAGAATTAGAGCCCTTTTTCACATTCCTCATTGTTTCACAACTTGTATTTTGCCA--ACCTTCCCAATTCTTGATCTTAAAATGTTAATCTTAATTTTCAAAATCATTCTGAGGACATTTAA-TTGGCATGTGTCTGTTACTCCA-CTATGTAGAACATTGGGGAAATAAAATTTAGTGGCTGGACCAGACTTACAAGGT-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      301424 333 +    446445 CATTTAATAGAAAAAG----ACGACACTTAATTTAGAATAGCG-AAAAGTTGGCATGGGCA-GGCCTGATGAGAATGG-AAATGTAACATAGTTT-GGGTCCAGGAAGGCCCTCAGAGAGCATCTTTCCCCACCTTGCACAGTGGGAGAATTAGAACCCTTTTTCACATTCCTCATTGTTTCACAACTTCTACTTTGCCA--GCCTTCCCAATtcttgatcttaaaatgttaatcttaattttcaaaattattctGAGGACATTCAA-TTGGCATGTGTCTATAACTCCA-CTTTGTAGAACATTGGGGAAATAAAATTTAGTGGCTGGACCAGACTTACAAGGT-
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      163136 323 +   1371726 CATTTGATAGAAGAAG----ATAACTCTCAATTTAGAATAGGG-CAAAATTTGCATGGTCAGGGCCTGATGAG-ATGGAAATTGGAATATAACT--GGGTCCAGGAACTCCCTCAGAGAAAATCTT-CCCCACTCTCTACAATGGGAGAAGTAGACGCCTTTTGTGCATTCATCGTTGTTTCACGG-TTGTATTTTGTGG--ACCTTCTCAATTCTTGATCTTGAAATGT---------TTCTCAAAGTTATC-TGAGGACATTCAGCTTGGTCTGGATCTATAACCCCACATATGTGGAACATTGCAGAAAGAAAATATGGCGGCTGGACCAGAATTACAAGGT-
i proCoq1.NW_012150019v1   C 0 I 668
s otoGar3.GL873550          15354787 323 -  18854210 CATTTTATAGAAGAAAAATTATGACTCTTAATTTAGAATAGAA-CAAAGTTGGCATGG-CAGGGCCTGATGAGAATGGAAAGTGTAATGCAGCTC-AGACCCAAGAAATCCCTCGGAGAAAATCTT--CCCACTC------ATGGTGTGAGGAGACACCTTTTGTACATTCAGCACTGTTTCATGA-TTGTATTTTGCTGGCGCTTCCCCACTTCTTGATCTTGAAATGC---------TTCTCAGAATTATC-TGAGGGCATTCAGCTTGGTCTGTGTCTATAGTCCCACATCTGTGGAACTTGGCAGAAATAAGATACAGTGGCTGGACCACACTTCAGAGGT-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70403827 320 -  72498081 CATTTGATAGATAAGG----ATGACTCTCAATTTAGAACAGAG-AAAAACTAGCATGGCCAGAGACTGATGA-ACTGG-AAGCGTAACATAGTTTGGGGTCCAGGAAAGACATCAGGGAAAATCT----CCAATTTTCACAATGGGAGTATTAGA--CTTTTTATGTATTCATTATTGTTTTGTGTTTTGTATTTTGGCA--ACATCCCCAGTTCTTGCTCTTACAATGT---------TTCTCAAAATAATC-TAAGCACATTGAACCTGGTGTATGTTGAGAGCTCCACATACGTGGGACTTCAGGGAACTAAAATATGGTAGTTGGGTCTGACTTATAAGGT-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            509340 299 +    935526 CATTTGATAGAGAATT----ATGGCTATCAATTTTGAATAAAG-CAAAGTGGGCATGGACAGAGCCTGATGAAAATTGAAAGTGTAATATAGCTT-GGATCCAGGATAACTCT--GAGAAAATCTT-CTCCATGCTCCACGATGGGAGGTTTAGA---CTTTTTTGCATTCATAGTCGCTTTGTGCTTTGTATATTGCC---ACCCTCCTATGTCTTTATCTTACTGTGT---------TTCTCAAGGCCCTC-TGCAGCTGGTGAATCTGTTGTGT---TCTAACTCC--------------TTGGGGAACTAAGACTTGGTGGCTGGATCTAAC-----AGGTT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4497943 990 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=597165.000000
s hg38.chr6_KI270758v1_alt     56115 257 +     76752 -----ACTATAAAGTCC-ACCTAGAGGAAAG-CTTCTTCAAATATCATTACCAAAAGTCCACATGAGACACGTTTTTAAA-CCCCTCCCTATTACCACATCAGAGGGTGGGGATGGCTCCAACGCCTTCAAGTCTCAGACAGGTCTGTGCACCTCTGCTCACGCTGCAGGGTCTTCCAGGCACTTAATGCAAACTATTTTGTTCAACTCTGAAACA---TTATGATTTTGGTAGTTGTATAGCAAATTTACAGTTTAAGAAACTGAGG
s gorGor5.CYUI01000036v1     2425556 256 +   2807050 -----ACTATAAAGTCC-ACCTAGAGGAAAG-CTTCTTCAAATATCATTACCAAAAGTCCACATGAGACACGTTTTTAAAACCCCTCCCTATTACCACGTCAGAGGGTGGGGATGGCTCCAACGCCTTCAAGTCTCA--CAGGTCTGTGCACCTCTGCTCACACTGCAGGGTCTTCCAGGCACTTAATGCAAACTATTTTGTTCAACTCTGAAACA---TTATGATTTTGGTAGTTGTATAGCAAATTTATAGTTTAAGAAACTGAGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45718160 255 - 122973662 -----ACCATAAAGACT-ACCTAGAGGAAAG-CTTCTTCAAATATCATTATCAAAAATCCACATGAGACACGTTTTTAAA-CCCCTCCCTATTACCACTTCAGAGGGTGGAGATGGCTCCAACGCCTTCAAGTCTCA--CAGGTCTGCGTGCCTCTGCTCACACTGCAGGGTCTTCCAGGCACTTAATGCAAACTATTTTGTTCAACACTGAAACA---TTATGATTTTGGTAGTTGTATAGCAAATTTATAGTTTAAGAAACTGAGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138678512 254 - 171630274 -----GCTACAAAGACT-ACCTAGATGAAGA-TTTCTTCAAATATCATTACCAAAAATCCACATGAGACTCA-TTTTAAA-CCCCTCCCTATTGCCAAGTCAGAGGGTAGGAATGGCTCCAATGCCCTCATGTCTCA--CAGGTCTGTGCCCCTCTGCTCACACTGCATGGGCTTCCAGGCACTTTATGCAAACTATTTTGTTCAACTTTGAAACA---TTATGATTCTGATAGTTGTATACCAAATTCATAGTTTAAGAAACTGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            232308 257 +   1154217 -----ACTACAAAGACT-ACGTAGATGAAGA-TTTCTTCAAATATCATTACCAAAAGTCCACATGAGACTCA-CTTTCAA-CCCCTCCCTATTACCAAGTCAGAGGGTGGGAGGGGCTCCAATGCCCTCAGGTCTCA--CAGGTCTGTGCCCCTCTGCTCACACTGAGTGGGTttccgggcactttatggaaactattttgttcaactctaaaacaatgttatgattttggtagttgtataccaaattcatagtttaagaaactgagg
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14052125 257 +  15232693 -----ACTATAAAGACT-ACCTAGATGAAGA-TTTCTTCAAATATCATTACCAAAAGTCCACATGAGACTCA-TTTTAAA-CCCCTCCCTGTTACCAAGTCAGAGGGTGGGAATGGCTCCAATGCCCTCAAGTCTCA--CAAGTCTGTGGCCCTCTGCTCACACTGCATGGGCTTCCAGACACTTTATGCAAACTATTTTGTTCAACTCTGAAACAATGTTATGATTTTGATAGTTGTATACCAAATTCATAGTTTAAGAAACTGAGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      301757 257 +    446445 -----ACTATAAAGACT-ACCTAGATGAAGG-TTTCTTCAAATATCATTACCAGAAGTCCACATGAGACTCA-TTTTAAA-CACCTCCCTATTACCAAGTCAGAGGGTGGGAGTGGCTCCAATGCCCTCAAGTCTCA--CAGGTCTGTGCCCCTCTGCTCACACTGCATGGGCTTCCAGGCACTTTATGGAAGCCATTTTGTTCAACTCTGAAGCAATGTTATGATTTTGACAGTTGTACACCAAATTCATAGTTTAAGAAACTGAGG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15355110 231 -  18854210 -----ATTATAAACACC-ACGCAGAGGGCTG-TTTCCTTACATTTCATTGTCAAAAATTCACCTGGGACTC--CTGTCAA-CCACTCCCATTCACTGAGGCAGAGGGTGGGGTTAGTTCCAG-------------CA--C-----------CCTCTgctcttactgtgtggtcatctacatgccatgtacagactattttgcttaactccacaacaacctaatgatgtggagagtaatgcactgaatttatagattaagaaactgag-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70404147 248 -  72498081 --------ATAAAAATCAAACCAGGGGAAGG-TTTCTTCATATTTCATTACTAAAAATCCACCTGAAACTCA-TCATCAT-CCCTTCTCT-TTATCAAGGCA----ATGGGATTGGATTCTGTGCCTTCACGTCTCA--T-GGTCTGCATGCCTTCACTCACactgtatagtcacccaaaagttttatatagattattttgtttaactc-agaacaatcttatgattttgatggtaatatatttatttcacagtttaagaaattgagg
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            509639 232 +    935526 ATTTTTTTTTAA------ATCTAGGGGAAGACTTTCTTCCACCATCTTTACC-----------TGAGACTGA-TCTCCAT-CCCTTCCGCATTCCCAAGGCAGAGGGTGGGACTGCCTCCAACACCCTCAGGTCTCA--CAGGTCTATGTGCCTCCATTCACACTGCATGGTCATccaagggatttgtatagattattttgcttaaccctaaa--------------ttggtagtaacatcccaattttattg-ctaagaaactgagg
i dasNov3.JH569424         C 0 I 43
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4497943 990 + 123392446 I
e proCoq1.NW_012150019v1      163459 668 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=126705.000000
s hg38.chr6_KI270758v1_alt     56372 77 +     76752 CATTAAGAAGTAGTTTAAGACAGATTAAGAAGTAGTTTAA---AATCATACAGAATTGAAGtgttagaagaaaaacttta
s gorGor5.CYUI01000036v1     2425812 77 +   2807050 CATTAAGAAGTAGTTTAAGACAGATTACGAAGTAGTTTGA---AATCATACAGAATGGAAGtgttagaagaaaaacttta
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45718415 77 - 122973662 CATTAAGAAGTAGTTTAAGACAGATTAAGAAGTAGTTTAA---AATCATACAGAATGGAAGtgttagaagaaaaacttta
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138678766 77 - 171630274 CGTTAAGAAGTAGTTTAAGACAAATTAAAAAGTGGTTTAA---AATCGTACAGAATTGAAGtgttagaagaaaaacttta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            232565 55 +   1154217 cattaagaagta----------------------gtttaa---aatcatacagAATTGACGtgttagaagaaaaacttta
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14052382 55 +  15232693 CATTAAGAAGTA----------------------GTTTAA---AATCATACAGAATTGAAAtgttagaagaaaaacttta
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      302014 77 +    446445 CATTAAGAAGTAGTTTAAGACAGATTAAGAAGTAGTTTAA---AATCGTACAGAATTGAAGtgttagaagaaaaacttta
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15355341 62 -  18854210 --------------tgcagatagaataagaattggtttaa---gataatatatggtagatgtgttaaaaaaaaactttt-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70404395 66 -  72498081 tat--------------acacagattgagaagtagtttaaggtggtcgtacagatatgaagtgataaaatgttaatttta
i canFam3.chr12            C 0 I 1
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4497943 990 + 123392446 I
e proCoq1.NW_012150019v1      163459 668 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            509871 43 +    935526 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=494700.000000
s hg38.chr6_KI270758v1_alt     56449 288 +     76752 gacagactaaatttagcagagtctaacagagaaaaggatgactca---------taaacaagccat-----ccctcagaatcagaacggtttcagagaattcaaagcagcaatttggtcagacagcatttatggacagaaaatggaaatgaggtacagaaaacagaagtgaggtacagagacagctctattggttgcagcctggcgtttgccgatttgaacagggtttcaacagttggctgcctgcaactaacagaagtgcagcagctgctactcagctatttattacaaaagtgtactcct
s gorGor5.CYUI01000036v1     2425889 288 +   2807050 gacagactaaatttagcagagtctgactgagcaaaggatgactca---------taaacaagccat-----ccctcagaatcagaacggtttcagagaattcaaagcagcaatttggtcagacagcatttatggacagaaaatggaaatgaggtacagaaaacagaagtgaggtacagagacagctctattggttgcagcctggcgtttgccgatttgaacagggtttcaacatttggctgcctgcaactaacagaagtgcagcagctgctactcagctatttattacaaaagtgtactcct
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45718492 295 - 122973662 gacagactaaatttagcagagtctaactgagcaaagg-catcccaaaggcaaactaaacaaggcat-----ccctcagaatcagaacggtttcagagaattcaaagcagcaatttggtcagacagcatttatggacagaacatggaaataaggtacagaaaacagaagtgaggt-cagagacaactctattggttgcagcctggcgtttgccaatttgaacagggtttcaacagttggccgcctgcaactgacagaagtgcagcagctgctactcagctatttattacaaaagtgtactcct
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138678843 274 - 171630274 aacagactaaatttagcagcgtctaactgagcaaaagacaactcg---------taaacaaggcat-----cctgcagactcagaatggtttcagagcattcaaagcagcagtttggtc------------catacagaaaatagaaacgaggtacggaacacaggagtgagccgcagagccggctctgctggctgcagcttggcg-ttgccaatttgaataagatttcaggagttgaccg-ctgcaactgactgaagcgccccagctgctgctcagcgatttattacgaaagcgcactcca
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            232620 286 +   1154217 aacagactaaatttagcagagtctaactaagcaaaagatggctca---------taaacaaggcat-----cctccagaatcagaatggtttcagcgaatttaaagcagcaatttggtcagacagcagttataggcagaaaatggaaatgaggtgcagaaaacagaagtgaggtgcagagacggctttactggttgcggcttggtg-ttgctgatttgaataagatttcaagagttggccg-ctgcaactgactgaagcgcagcagctgctcctcagcgatttattacaaaagtacactcct
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14052437 284 +  15232693 aacagactaaatttaacagagtctaactgagcaaaagacgactca---------taaacaaggcat-----ccctcagaatcagaaaggtttcagagaatttaaagcagcaatttggtcagacagcagttatagacagaaaatggaaatgaggtacagaaaatagaagtgagctgcagagacggctctactggctgcagcttggtg-ttgccaatttgaataaggtttcaacagttgacca---gcaactgactgaagcgcagcagctgctactcagagatttattacaaaagtgcactcct
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      302091 286 +    446445 aacagactaaatttagcagagtctaactgagcaaaagatgactca---------taaaccaggcat-----ccttcagaatcagaatggtttcagagaattcaaagcagcagtttggtcagacagcagttacagacagaaaatggaaatgaggtacaggaaacagaagtgaggtgcggagacggctctactggttgcagcttggcg-tggccaatttaaataaggtttcaacagttgaccg-cggcaactgagtgacgcgcagcagctgctactcagctacttactacaaaagtgcactcct
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15355403 263 -  18854210 --cacattaaatttagcagagtttaattgagcaaagaatgattct---------agaatcagggagggagacctcc--aaccagaacagattcagagaactcctaggagcatcttggccagatagcatctggggacagaaaatggaagcgaggta--------------------cagagacagctctattgtttacagtgggatgtttgcctgtttgaacatggtttaaagaggcaac---gtgcaattggctcaagtg---gggatgcaagtcagatgtttactacaaaagtgtaccact
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4497943 990 + 123392446 I
e proCoq1.NW_012150019v1      163459 668 +   1371726 I
e canFam3.chr12             70404461   1 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            509871  43 +    935526 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=250154.000000
s hg38.chr6_KI270758v1_alt     56737 139 +     76752 aagttagCCTTAGCTCCTAAGTTAGGCTTATTCATAAAACAATTTTGCAATTAAAACTCTCAGAATAAAATGAGCAATTTAtaaatttggccccaggatgcctctgtacctgagtgcttatgtaacaaactgcaaccta
s gorGor5.CYUI01000036v1     2426177 139 +   2807050 aagttaggcttAGCTCCTAAGTTAGGCTTATTCATAAAATAATTTTGCAATTAAAACTCCCAGAATAAAATGAGCAATTTAtaaatttggccccaggatgcctctgtacctgagtgcctatgtaacaaactgcaaccta
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45718787 139 - 122973662 aagttaggcttAGCTCCTAAGTTAGGCTTATTCATAAAATAATTTTGCAATTAAAACTCCCAGAATAAAATGAGCAATTTAtaaatttggccccaggatgcctctgtgcctgagtgcttatgtaacaaactgcaaccta
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138679117 139 - 171630274 cagttaggcttagctcctaagttaggctTATTCATAAAATAATTTTGCAATTAAAACTACCAGAATAAAATGAGCAATTTAtaaatttggccccagaacgcctctgtacctgagtgcctacgtaacaaactgcagcctC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            232906 139 +   1154217 cagttaggCTTAGCTCCTAAGTTAGGCTTATCCATAAAATAATTTTGCAATTAAAACTCCCAGAGTAAAATGAGCAATTTATAAAGTTGGCCCCAGAACACCTCTGTACCTGAGTGCCTATGTAACAAACTGCAACCTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14052721 139 +  15232693 cagttaggctTAGCCCCTAAGTTAGGCTTATTCATAAAATGATTTTGCAATTAAAACTCCCAGAATAAAATGAGCAATTTAtaaagttggccccagaatgcctctgtacctgagtgcctatataacaaactgtaaccta
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      302377 139 +    446445 cagttaggcttAGCTCCTAAGTTAGGCTTATTCATAAAATAATTTTTCAATTAAAACTTCCAGAATAAAATGAGCAATTTAAaaatttggccccagaacgcctctgtacctgagtgcctatgtaacaaactgcaaccta
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4497943 990 + 123392446 I
e proCoq1.NW_012150019v1      163459 668 +   1371726 I
e canFam3.chr12             70404461   1 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15355666   0 -  18854210 C
e dasNov3.JH569424            509871  43 +    935526 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=182757.000000
s hg38.chr6_KI270758v1_alt     56876 106 +     76752 agttaggctttcag-tagttgacgtactaagttaaattgcagtttgttacataaggagtcaggtacagaggcatctg-gggccaaatttataaactgttcactttaTT
s gorGor5.CYUI01000036v1     2426316 106 +   2807050 agttaggctttcag-tagttgacgtactaagttaaattgcagtttgttacataaggagtcaggtacagaggcatctg-gggccaaatttataaactgttcactttaTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45718926 105 - 122973662 agttaggctttcag-tagttgacatactaagttagattgcagtctgttatataaggattcaggtacagaggcatctg-gggccaaattt-TAAACTATTCACTTTATT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138679256 103 - 171630274 GGTGAGGCTTTCAG-TGGCTG-CGTGCTAAGGTAGGTT-CAGTTTGTCACATGAGGCGTCAGGTACAGAGGCATCT--GGGCCAAATTCATAAACTGTTCCTTTCATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            233045 105 +   1154217 AGATAGGCCTTCAG-TGGCTGATGTGctaagttagattgcagttcgtcacatgaggcatccagtacagaggcatct--gggccaaattCGTAAACTGTTCATTTCATT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14052860 105 +  15232693 agttaggctttcag-tggctgatgtgctaagttagattgcagtttgtcacatgaggagtcaggtacagagccatct--gggccaaattcaTAAACTGTTCAATTCATT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      302516 105 +    446445 agttaggctttcag-tgtctggtgtgctaagttagattgcagtttgtcacatgaggagtcaggtacagaggcatct--gggccaaattCATAAACTGTTCATTTCATT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15355666 105 -  18854210 agttaggcgttcagttacctgacatact--gttaggttgcaggtcattacataagga-tcgggcatagagatatcctcaggccaaatttGTAATATTTTCCTTTTATG
i otoGar3.GL873550         C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4497943 990 + 123392446 I
e proCoq1.NW_012150019v1      163459 668 +   1371726 I
e canFam3.chr12             70404461   1 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            509871  43 +    935526 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=453474.000000
s hg38.chr6_KI270758v1_alt     56982 305 +     76752 CTGGGTGt-------------------tt------tttgtttgtttgttt----ttaaagtct---cgctttgtcacccagcctggagtgcagtggcatgatctcagctcactgcaacctctgcctcccgggttcgagcaattcttccacctcagcctcctgagtagctgggattacaggcacccaccatcatgcccgactaatttttgtatttctgtagagacggggtttcaccatgttggccaggctggtcttgaactcctgacctctggtgatccacccgcttcggcctcccaaagtgctgggattatagacttgagccaccacacccagccTA-
s gorGor5.CYUI01000036v1     2426422 309 +   2807050 CTGGGTGt-------------------tt------tttgtttgtttgtttgtttttaaagtct---cgctttgtcacccagcctggagtgcagtggcatgatctcagctcactgcaacctctgcctcccgggttcgagcaattcttccacctcagtctcctgagtagctgggattataggcacccaccatcatgcccgactaatttttgtatttctgtagagacggggtttcaccatgttggccaggctggtcctgaactcctgacctctggtgatccacctgcttcggcctcccaaagtgctgggattatagacttgagccaccacacccagccTA-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45719031 310 - 122973662 CTGGGTGt-------------------tt------tttgtttgtttgtttttagacaaagtct---cgctttgtcacccagcctggagtgcaatggcatgatctcagctcactgcaacctctgcctccaggcttcaagcaattcttccacctcagcctcctgagtagctgggattacaggcacccaccatcacgcccgactaatttttgtatttttgtagagacggggtttcaccatattggccaggctggtcttgaactcctgacctctggtgatccacccgctttggcctcccaaagtgctgggattatagatttgagccaccatgcctggccTAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138679359 331 - 171630274 CTGGGAGAttgtttgtttgtttgtttgtttgtttgtttgtttgtttgttt-tagacagagtct---ctctttgtcacccagcctggagtgcaatggcatcatctcggctcactgcaacctccccctcccaggttcaagtcactcttctgcttcagcctccagagtacctggg-ctacaggcattcgagaccacacccagctaatttttgtacttttgtagagatggggcttcaccatgttgaccaggctggt--tgaactcctgacctcaggtgatccgcccaccttggcctcgcaaagtgcttagattacaggcatgaaccactgtgcccaaccTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            233150 307 +   1154217 CTGGGAGA---------------------------tttgtttgtttgttt-tagacagagtctctcctctttgtcacccagcctggagtgcaatggcatcatctcggctcactgcaaactccacctcccaggttcaagtcattcttctgcctcagcctcccgagtatctggg-ctacaggcatttgagaccacacccagctaatttttgtatttttgtagagatggggtttcaccatgttgaccaggctggt--tgaactcctgacctcaggtgatccgcccacctcagtctcgcaaagtgctgagattacaggcatgagccactgtgcccaaccTAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14052965 312 +  15232693 CTGGGAGA-------------------TTGAtttgtttgtttgcttgttt-tagacagagtct---ctctttgtcacccagcctggagtgtaatggcataatctcggctcactacaacctccacctcccaggttcaagtcattcttctgcctcagcctccagagtacctgca-ctacaggcattcaagaccacacccagctaatttttgtatttttgtagagatgggatttcaccatgttgaccaagctggt--tgaactcctgacctcaggtgatccgcccacctcggcctctcaaagtgctgggattacaggcatgaaccactgtgcccATCCTAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      302621 304 +    446445 CTGGGAGG---------------------------TTGGtttgtttgttt-cagacagagtct---ctctttgtcacccagcctggagttcaatggcatcatctcggctcactgcaacctccacctcccaggttcaagtcattcttcctcctcagcctccagagtacctggg-ctacaggcattcgagaccacacccagctaatttttgtgtttttgtagagatggggtttcaccatgttgaccaggctggt--tgaactcctgacctcaggtgatccgcccacctcagtctcgcaaagtgctgggattacaggcatgagccactgtgcccaaccTAT
i aotNan1.NW_018508875v1   C 0 C 0
e mm10.chr17                34362781 158 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4497943 990 + 123392446 I
e proCoq1.NW_012150019v1      163459 668 +   1371726 I
e canFam3.chr12             70404461   1 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15355771   0 -  18854210 C
e dasNov3.JH569424            509871  43 +    935526 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=6006.000000
s hg38.chr6_KI270758v1_alt     57287 1 +     76752 T
s gorGor5.CYUI01000036v1     2426731 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45719341 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138679690 1 - 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            233457 1 +   1154217 T
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14053277 1 +  15232693 T
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      302925 1 +    446445 T
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4498933 1 + 123392446 T
i micMur3.chr6             I 990 C 0
s proCoq1.NW_012150019v1      164127 1 +   1371726 T
i proCoq1.NW_012150019v1   I 668 C 0
s mm10.chr17                34362939 1 +  94987271 T
i mm10.chr17               I 158 C 0
s canFam3.chr12             70404462 1 -  72498081 t
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            509914 1 +    935526 T
i dasNov3.JH569424         I 43 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15355771 0 -  18854210 C
e panPan2.chr6             140905902 7 - 173848474 I
e panTro5.chr6             142758252 7 - 175400573 I

a score=57895.000000
s hg38.chr6_KI270758v1_alt     57288 10 +     76752 CTGGGAGTTT
s gorGor5.CYUI01000036v1     2426732 10 +   2807050 CTGGAAGTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45719342 10 - 122973662 CTGGGAGTTT
i nomLeu3.chr1a            C 0 I 21408
s calJac3.chr4             138679691 10 - 171630274 CTGGGAGTTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            233458 10 +   1154217 CTGGGAGTTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14053278 10 +  15232693 CTGGGAGTTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      302926 10 +    446445 CTGGGAGTTT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4498934 10 + 123392446 CTGGGAGATT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      164128 10 +   1371726 CTGGGAGATT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15355771 10 -  18854210 CTGGGAGATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34362940 10 +  94987271 CTGAGAATTT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70404463 10 -  72498081 ctaggagtat
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            509915 10 +    935526 CTGGGAATTT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=186589.000000
s hg38.chr6_KI270758v1_alt     57298 45 +     76752 TAATTGCAAAATTATTTTATTATTGGTCTGTAAACTGAAAAAAAT---------
s gorGor5.CYUI01000036v1     2426742 45 +   2807050 TAATTGCAAAGTTATTTTATTATTGGTCTGTAAACTGAAAAAAAT---------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45740760 45 - 122973662 tAATTGCAAAATTATTTTATTATTGGTCTGTAAACTGAAAAAAAT---------
i nomLeu3.chr1a            I 21408 C 0
s calJac3.chr4             138679701 45 - 171630274 TAATTGCAAAATTGTTTTATTGTTGGTCTTTAAACTGAAAAAATT---------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            233468 45 +   1154217 TAATTGTAAAATTGTTTTATTATTGGTCTATAAACTGAAAAAATT---------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14053288 45 +  15232693 TAATTGCAAAATTGTTTTATTATTGGTCTGTAAATTGAAAAAATT---------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      302936 45 +    446445 TAATTGCAAAATTGTTTTATTATTGGTCTGTAAACTGCAAAAATT---------
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4498944 45 + 123392446 TTATTGCAAAATTATTTTATCATCGGTCTGTAAACTGAATAAAAT---------
i micMur3.chr6             C 0 I 92
s proCoq1.NW_012150019v1      164138 45 +   1371726 TTACTGCAAAATTATTTTATTATTGGTCTGTAAACTGAATAAAAT---------
i proCoq1.NW_012150019v1   C 0 I 98
s otoGar3.GL873550          15355781 45 -  18854210 TTACTGCTAAATTATTTTATTTTCTATCTGTAAGCTGAATAAAAT---------
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34362950 37 +  94987271 TAGCAGTAAAATCATTCCCTTATTGGCGTGTAGCCTG-----------------
i mm10.chr17               C 0 C 0
s canFam3.chr12             70404473 42 -  72498081 taactgcaaaatTATTTTATT---GGGTTGTAATCTGAATAAAAT---------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            509925 54 +    935526 GAACTGCAACATTCTTTTCTGATTTGGATATAACCTGAATAAAAATCTAGGGCT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=177079.000000
s hg38.chr6_KI270758v1_alt     57343  95 +     76752 ACAGGTAGAAGCAGGTAGGGATTCA-------------------ATTACTG--TTTTACTCAG---ACTGACACACATCATGGAATGATTCCTCCTTAAAGAAGAGCAACCTCTATTCT
s gorGor5.CYUI01000036v1     2426787  95 +   2807050 ACAGGTAGAAGCAGGTAGGGATTCA-------------------ATTACTA--TTTTACTCAG---ACTGACACACATCATGGAATGATTCCTCCTTAAAGAAGAGCAACCTCTATTCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45740805  95 - 122973662 ACAGGTAGAAGCAGATAGGGATTCA-------------------ATTACTA--TTTTACTTGG---GCTGACACACATCATGGAATGATTCCTCCTTAAAGAAGAACAACCTCTATCCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138679746  91 - 171630274 ACAGGCAGA----AGTAGGGATTCA-------------------ATTACTG--TTTTATTCGA---ACTGACACGCATCATGGAATGATTCCTTTTTAAAGAAGAACAACCTCTATTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            233513  94 +   1154217 ACAGGCAGAAGC-AGCAGGGATTCA-------------------ATTACCA--TTTTACTCGG---ACTGACACACATCATGGGCTGATTCCTCCTTAAAGAAGAACAACCTCTATTCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14053333  94 +  15232693 ACAGGCAGAAGCAGGCAGGGGTTCA-------------------ATTACCA--TTTTACTCG----ACTGACACACATCATGGACTGATTCCCCCTTAAAGAAGAACAACCTCTATTCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      302981  95 +    446445 ACAGGCAGAAGCAGGCAGGGATTCA-------------------ATTACTA--TTTTACTCGG---ACTGACACACATCATGGAATGATTCCTCCTTAAAGAAGAACAACCTCTATTCT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15355826  92 -  18854210 -----TTGGGGCTACTGGGGGTTCA-------------------ATTACTGATTTTTTTTTTG---ACTGACACACATCGGGAGATGGTTCTTCCTTGAACAAAGACATCATCTATCTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34362987  55 +  94987271 ------------------GCCTTTA-------------------ATTAATG--TTTCCTTCAG---ACTAGCAA------------GGCTCTTCTTTAAA----------TTGCATGCA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70404515  60 -  72498081 --AGGTAGAGGCAGGTGTGGGTTCT-------------------ATTAATA------------------------------------GTTCCTTTTTTCAG--GGACAAGGTCTATCCT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            509979 115 +    935526 ACAGATATTGGGGTATAGGGATCCAGGTGTAGGGGTACAAGAGTACTAACA--GTGAACTTGGGGCACTGACACGGAGCACGG--CTGTTCTGCCTTGAACAGGGGCAGTCTCTGTATT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4498989  92 + 123392446 I
e proCoq1.NW_012150019v1      164183  98 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=482228.000000
s hg38.chr6_KI270758v1_alt     57438 125 +     76752 GAGT-CCATGAAACCCCCACCTCACCTAAGGATGACCCTGAGCCTCACAGCAACCCTGGGATGCTCATGGTTTC--TAAACTCCAATGGAGCTGTTCTTAGAGATGACATTATTGGTTCCATTTTGAT
s gorGor5.CYUI01000036v1     2426882 125 +   2807050 GAGT-CCATGAAACCCCCACCTCACCTAAGGATGACCCCGAGCCTCACAGCAACCCTGGGATGCTCATGGTTTC--TAAACTCCAATGCAGCTTTTCTTAGAGATGACATTATTGGTTCCATTTTGAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45740900 125 - 122973662 GAGT-CCATGAAACCCCCACCTCACCTAAGGATGACCTCGAACCTCACAGCAACCCTGGGATGCTCATGGTTTC--TAAATTCCAATGGAGCTGTTCTTAGAGATGACATTATTGGTTCCATTTTGAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138679837 124 - 171630274 GAGT-CTATGACACCCCCACCTCACCTAAGGATGACCCTGAGCCTCACAGCTTCCCTGGGATGCTCACGGTTTC--TAAACGCCAGTGGAGCTGTTCTTAGAGATGACATTATTGGTTCCA-TTTGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            233607 125 +   1154217 GAGT-CTGTGACACCCTCACCTCACCTAAGGATGACGCTGAACCTCACAGCTTCCCTGGGATGCTCATGGTTTC--TAAACTCCAACGGAGCTGTTCTTAGAGATGACATTATTGGTTCTATTTTGAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14053427 125 +  15232693 GAGT-CTGTGACACCCCCACCTCACCTAAGGATGACCCTGAACCTCACAGCTTCCCTGGGATGCTCATGGTTTC--TAAACTCCAACGGAGCTGTTCTTAGAGATGACATTATTGGTTCCATTTTGAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      303076 125 +    446445 GAGT-CTGTGACACCCCCACCTCACCTAAGGATGACCCTGAGCCTCACAGCTTCCCTGGGATGCTCTTGGTTTC--TAAACTCCAGTGGAGCTGTTCTTAGAGATGATATTATTGGTTCCATTTTGAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4499081 123 + 123392446 GAGT-CCACGAAACCCCCACCTCTCCCAAGGATGACCTTGGCCCTCACAGCT-CCCTGGGATGCTTATGGGTTC--TAAACCCCACTAGAGACTTTCTTGCT-AGGATATAATTTGCCCCATTTTGAT
i micMur3.chr6             I 92 C 0
s proCoq1.NW_012150019v1      164281 125 +   1371726 GAGT-GCACGAAACCACCACCTCTCCCAAGGATGACCTTGGCCCTCACAGCTCCCCTGGGATGCTCATAGGTTC--TAAACCCCACTAGAGATTTTCTTGCTGAGGATATAATTTGCCCCATTTTGAT
i proCoq1.NW_012150019v1   I 98 C 0
s otoGar3.GL873550          15355918 123 -  18854210 GAGC-CCATGAAACCCCACCTCCCCCCGGGGATGACCCCAGCCCTCACAGCTCCCCTGGG----TTAGGAGCTCTATAAACTCTACTAGAGAATTTCTTGCTAAGGAGATAATTTGCTCCATTTTGAT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34363042 123 +  94987271 GAGA-CTACAAGCCCCACCTTCCTCCAAGGAGGGACCCTGGGCCTCTAACCTCCCCTGGGATGCTCGTGGGTTC--CAAACCTCACAGGA--TGTCCATGTTAGTAGAGTGATTTTCTCTGTGTTGAT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70404575 124 -  72498081 GATTCCCCTGAAACCTCCCTCTCTCTGCAAGATGACCTGGTGCCTCACAGCT-CCCCGGGATGCCCATGAG-TC--TAAATCCCACTGGAGATGTTCTTACTGATGACACTATTTACTCCATGTTGTG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            510094 116 +    935526 GACT-CCACCAAGCCCCCAGT--------GAGTGGCCTTGAGCCTCACAGCGCCCAAGGGATGCCCCTGGACTC--CAAACCCTAGCAAAGATGTTCTTGCTGATGAGTCTGTTT-CTCCATTTTAGG
i dasNov3.JH569424         C 0 I 240
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=2786422.000000
s hg38.chr6_KI270758v1_alt     57563 489 +     76752 TCTTTCATTGTGTTTTGTCCACTCTATTTAACAGCTTCTTTAAAAGTGAATGGACCTTCCCAGCCCATCCTCGTCAGAGTGGGAGAAGATATACAGCTAACCTGTTACCTGTCCCCCAAGGCGAATGCACAGAGCATGGAGGTGAGGTGGGACCGATCCCACCGTTACCCTGCTGTGCATGTGTATATGGATGGGGACCATGTGGCTGGAGAGCAGATGGCAGAGTACAGAGGGAGGACTGTGCTGGTGAGTGACGCCATTGACGAGGGCAGACTGACCCTGCAGATACTCAGTGCCAGACCTTCGGACGACGGGCAGTACCGCTGCCTTTTTGAAAAAGATGATGTCTACCAGGAGGCCAGTTTGGATCTGAAGGTGGTAGGTAAGAATTCTAGATAGATA-TTTTGTATTCAATACCTGCTCTTGCCACTTTAATATGCTAGTTCCTGGACAATTTCTCTGACATTTGAAATTTTCTTAATGCTTATT
s gorGor5.CYUI01000036v1     2427007 489 +   2807050 TCTTTCATTGTGTTTTGTCCACTTTATTTAACAGCTTCTTTAAAAGTGATTGGACCTTCCCAGCCCATCCTTGTCAGAGTGGGAGAAGATATACAGCTAACCTGTTACCTGTCCCCCAAGGCGAATGCACAGAGCATGGAGGCGAGGTGGGTCCGATCCCACCGTTACCCTGCTGTGCATGTGTATATGGATGGGGACCATGTGGCTGGAGAGCAGATGGCGGAGTACAGAGGGAGGACTGTGCTGGTGAGTGACGCCATTGACGAGGGCAGACTGACCCTGCAGATACTCAGTGCCAGACCTTCGGACGACGGGCAGTACCGCTGCCTTTTTGAAAAAGATGATGTCTACCAGGAGGCCAGTTTGGATCTGAAGGTGGTAGGTAAGAATTCTAGATAGATA-TTTTGTATTCAATACCTGCTCCTGCCACTTTAATATGCTAGTTCCTGGACAATTTCTCTGACATTTGAAATTTTCTTAATGCTTATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45741025 489 - 122973662 TCTTTCATTGTGTTTTGTCCACTCTATTTAACAGCTTCTTTAAAAGTGATTGGACCTTCCAAGCCCATCCTTGTCAGAGTGGGAGAAGACATACAGCTAACCTGCTACCTGTCCCCCAAGGCGAATGCACAGAGCATGGAGGTGAGGTGGGTCCGATCCCACCGTTACCCTGCTGTGCATTTGTATATGGATGGGGACCATGTGGCTGGAGAGCAGATGGCAGAATACAGAGGGAGGACTGTGCTGGTGAGTGACGCCATTGACGAGGGCAGACTGACCCTGCAGATACTCAGTGCCAGACCTTCGGACGACGGGCAGTACCGCTGCCTTTTTGAAAAAGATGATGTCTACCAGGAGGCCAGTTTGGATCTGAAGGTGGTAGGTAAGAATTCTAGATAGATA-TTTTGCATTCAATACCTGCTCCTACCACTTTAATATGCTAGTTCCTGGACAATTTCTCTGACATTTGAAATTTTCTTAATGCTCATT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138679961 488 - 171630274 TCTTTCATTATGTTTTGTCCACTGTA-TTAACAGCTTCTTTAAAAGTGATTGGACCTTCCCAGCCCATCCTTGTCAGAGTGGGAGAAGATATACAGCTAACCTGTTACCTGTCCCCCAAGGCAAATGCACAGAGCATGGAGGTGAGGTGGGTCCGATCCCACCGTTACCCTGCTGTGCATGTGTATAAGGATGGGGACCATGTAGCTGGAGAGCAGATGGCAGAGTACAGAAGGAGGACTGTGCTGGTGAGTGACACCATCGACGAGGGCAGACTGACCCTGCAGATACTCAGTGCCAGACCTTCAGACGACGGGCAGCACCGCTGCCTTTTTGAAAAAGATGATGTCTACCAGGAGGCCAGTTTGGATCTGAAGGTGGTAGGTAAGAAGTCTAGATAGATA-TTTTGTATTCAATACCTGCTCCTACCCCTTTAATATGCTAGTTCCTGGACAATTTCTCTGACTTTTGAAATTTTCTTAATGCTCATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            233732 489 +   1154217 TCTTTCATTATGTTTTTTCCACTGTATTTAACAGCTTCTTTAAAAGTAATTGGACCTTCCCAGCCCATCCTTGTCAGAGTGGGAGAAGATATACAGCTAACCTGTTACCTGTCCCCCAAGGCAAATGCATGGAGCATGGAGGTGAGGTGGGTCCGATCCCACCGTTACCCTGCTGTGCATGTGTATAAGGATGGGGACCATGTAGCTGGAGAGCAGATGGCGGAGTACAGAGGGAGGACTGTGCTGGTGAGTGACACCATCGACGAGGGCAGACTGACCCTGCAGATACTCAGTGCCAGACCTTCAGACGACGGGCGGTACCGCTGCCTTTTTGAAAAAGATGATGTCTACCAGGAGGCCAGTTTGGATCTGAAGGTGGTAGGTAAGAAGTCTAGATAGATA-TTTTGTATTCAATACCTGCTCCTACCCCTTTAATATGCTAGTTCCTGGACAATTTCTCTGACATTTGAAATTTTCTTAATGCTCATT
i saiBol1.JH378315         C 0 I 2377
s cebCap1.NW_016107339v1    14053552 489 +  15232693 TCTTTCGTCATGTTTTGTCCACTGTATTCAACAGCTTCTTTAAAAGTGATTGGACCTTCCCAGCCCATCCTTGTCAGAGTGGGAGAAGATATACAGCTAACCTGTTACCTGTCCCCCAAGGCAAATGCACGGAGCATGGAAGTGAGGTGGGTCCGATCCCACCGTTACCCTGCTGTGCATGTGTATAAGGATGGGGACCATGTAGCTGGAGAGCACATGGCGGAGTACAGAGGGAGGACTGTGCTGGTGAGTGACACCATCGACGACGGCAGACTGACGCTGCAGATACTCAGTGCCAGACCTTCAGACGACGGGCAGTACCGCTGCCTTTTTGAAAAAGATGATGTCTACCAGGAGGCCAGTTTGGATCTGAAGGTGGTAGGTAAGAAGTCTAGAGAGATA-TTTTGTATTCAATACCTGCTCCTACCCCTTTAATATGCCAGTTCCTGGACAATTTCTCTGACATTTGAAATTTTCTTAATGCTCATT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      303201 489 +    446445 TCTTTCATTATGTTTTGTCCACTGTATTTAACAGCTTCTTTAAAAGTGATTGGACCTTCCCAGCCCATCCTTGTCAGAGTGGGAGAAGATATACAGCTAACCTGTTACCTGTCCCCCAAGGCAAATGCACAGAGCATGGAGGTGAGGTGGGTCCGATCCCACCTTTACCCTGCTGTGCATGTGTATAAGGATGGGGACCATGTAGCTGGAGAGCAGATGGCGGAGTACAGGGGGAGGACTGTGCTGGTGAGTGACGCCATCGACGAAGGCAAACTGACCCTGCAGGTGCTCAGTGCCAGACCTTCAGACGACGGGCAGTACCGCTGCCTTTTTGAAAAAGATGATGTCTACCAGGAGGCCAGTTTGGATCTGAAGGTGGTAGGTAAGAAGTCTAGATAGATA-TTTTGTATTCAATACCTGCTCCTACCCCTTTAATATGCTAGTTCCTGGACAATTTCTCTGACATTTGAAATTTTCTTAATGCTCATT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4499204 489 + 123392446 ACTTTCATTGGGTTTTGTCTGCTGTATTTAACAGCTTCCTTAAAAGTGATTGGACCGTCCCAGCCCATCCTTGTCGGAGTGGGAGAAGACACACAGTTGACCTGTCACCTGTCCCCCAAGGCTAATGCTCAGAGCATGGAGGTGAGGTGGGTCCGATCCCACCGTTACCCTGCTGTGCACGTGCACGCGGATGGGGGCCCTGTGGCTGGAGAGCAGATGGCAGAGTACAGAGGGAGGACGGCGCTGGTGAGCGACGCCATCGACGAGGGCAGACTGACCCTGCAGATACGCAGCGCCAGGCCTTCGGATGACGGGCAGTACCGCTGCATTTTTGAAAAAGATGGTGTCTACCAGGAGGCCAGTTTGGATCTAAAGGTGGTAGGTAAGGATTCCAGATAGATGTTTTTGGAGTTAACATCTGTTCCTACCACTTTAACATGCTAGTTCCTAGGAAATGACTCTG-CACCTGAAATTTTCTTAATGTGCATT
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      164406 488 +   1371726 ACTTTCATTGTGTTTTCTCTGCTGTATTTAACAGCTTCCTTAAAAGTGATTGGACCTTCCCAGCCCATCCTTGTCAGAGTGGGAGAAGACATACAGTTGACCTGTCACCTGTCTCCCAAGGCTAATGCACAGAGCATGGAGGTGAGGTGGGTCCGATCCCACCGTTACCCTGCTGTGCATGTGCACGTGGATGGGGACCCTGTGCCTGGAGAGCAGATGGCAGAGTACAGAGGGAGGACCACGCTGGTGAGTGACGCCATCGACGAGGGCAGACTGACCCTGCAGATACGCAGCGCCAGGCCTTCAGATGATGGGCAGTACCGGTGCATTTTTGAAAAAGATGGTGTCTACCAGGAGGCCAGTTTGGATCTAAAGGTGGTAGGTAAGGATCCCAGATAGATG-TTTTGGATTTAACATCTGTTCCTACCACTTTAACATGCTAGTTCCTGGAAAATTTCTCTG-CACCTGTAATTTTCTTAATGTGCATT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15356041 487 -  18854210 ACTTCCTTTGTG-CTTGTCTGCTGCATTTAACAGCTTTCTTAAAAGTGATTGGGCCTTCTCAGCCCATCCTTGTCAGAGTGGGAGAAGACACACAGTTGACCTGTTACCTGTCCCCCGAGGTTAATGCAGAGAGCATGGAGGTGAGGTGGGTCCGATCTCACCGTTACCCTGCTGTGCATGTGCATGTGGATGGGGACCCTGTGGCTGGAGAGCAGATGGCGGAGTATAGAGGAAGGACGGTGTTGGTGAGTGACGCCATCCAGGAGGGCAGACTGACCCTGCAGATACTCAGTGCCAGACCTTCAGATGATGGGCAGTACCGCTGCCTTTTTGAAAAAGATGGTGTCTACCAAGAGGCTGGTGTGGATCTAAAGGTGGTAGGTAAGGATTCCAGATAGATG-CTTTGGATTCAACATCTGTTCCTATCACTTTAACGTGCTAGTTTCTGGAAAATTTCTCTG-CACCTGACATTTTCTTAACGTCTATT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34363165 479 +  94987271 TCATCTA--------TGTCTGGTGTATTTAACAGCTTCCGTTAGCGTAATCGGACATTCCCAGCCCAGCCCTGTTCAAGTCGGAGAGAACatagaattaacttgtcacctctcacctcaaacggatgctcagaacttagaggtgaggtggctccgatcccgctattaccctgCAGTCCACGTGTATGCAAATGGCACCCACGTGGCTGGAGAGCAGATGGTAGAATACAAAGGGAGGACTTCATTGGTGACTGATGCCATCCACGAGGGAAAACTGACCCTGCAAATTCACAATGCCAGAACTTCGGATGAAGGGCAGTACCGGTGCCTTTTTGGAAAAGATGGTGTCTACCAGGAGGCCCGTGTGGATGTGCAGGTGATGGGTAAGGATACCAGGTGGATC-TTTTGGCTTCTCCAGCT--TCCTAACACTGTGGCACGCTGGTTCCTGGGAGATTTCTCTGACACCCAAAATATTCTCCGTGCTCATT
i mm10.chr17               C 0 C 0
s canFam3.chr12             70404699 484 -  72498081 TCTTT-ATTGTGTTTTGTCTATTGTATCTCATAGCTTCCTTAAAAGTGATTGGACCTTCCCAGCCCATCCTTGTCAGAGTGGGAGAAGACATACAATTAACCTGTTATCTGTCCCCTGAGACTAATGCACAAAGCATGGAGGTGAGGTGGATCCAATCACACCGTTATCCTGCTGTTTATGTGTATGCGGATGGGGAACATGTGACTGAAGAGCAGATGTCAGAATATAGAGGAAGGACAGTGTTGGTGAATGATGCCGCTGAGGAAGGGAGACTGACTCTGCAGATACACAATGCTACAGTGTCAGATGATGGGCAGTACCGGTGCCTTTTTGAAAAAGATGGTGTCTATCAGGAGGCCAGTTTCGATCTAAAGGTAGTAGGTAAGGATTCCAGATA-----TTTTGGATTCAACCTCTCTTCCTACTGCTTTAACATGCTAGTTCTTGGAAATTTCCCCTGGCACTTGAAATTTTTGGAATATCCATT
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            510450 489 +    935526 TCTTTCATTGTGTTTTATGTGCTGTATTTAACAGCTTCCTTACAAGTGATTGGACCTGCCCAGCCCATCCTTGTCACAGTGGGAGAAGATATACAGTTAACCTGTTACCTGTCCCCCAAGGCTAACGCCCAGAGCATGGAGGTGAGGTGGGTCCGACACCACCGCCATCCTGCTGTTTATGTGTATGTGGATGGGGACCATGTGGCTGGAGAGCAGATGCAAGAATATAGAGGGAGGACAGCGTTGGTGAGCGATGCCATCGATGAGGGGAATCTGACTCTGCAGATCCACGATGCCAGAATTTCAGATGCTGGGCAGTACCGGTGCCTTTTTGAAAAAGATGGGGTCTACCAGGAGGCCAGCTTTGATCTCAAGGTAGCAGGTGAGGATTTTAGATGGATA-TTTTGGATTCAACACCTGTTATTACTGCTTTAGCATACTAGTTCCTGGAAATTTTCACTGGCATCTGAAGTTTTCTTGATGCCTACT
i dasNov3.JH569424         I 240 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=526246.000000
s hg38.chr6_KI270758v1_alt     58052 150 +     76752 CAT-CATCAAATTTATATCAAATCCTCCAGTGTGT-GAAACTGTCATAGTTACTTAAAATCCACAAA--------CTCAAATGGATGAAATTTAATTATTTGGGCA-TATAACTTGTAT-CTTTTCCAGTATCTTCAAA----AATT--GACCATATCTTTAAGGAAA
s gorGor5.CYUI01000036v1     2427496 150 +   2807050 CAT-CATCAAATTTATATCAAATCCTCCAGTGTGT-GAAACTGTCATAGTTACTTAAAATCCACAAA--------CTCAAATGGATGAAATTTAATTATTTGGGCA-TATAACTTGTAT-CTTTTCCAGTATCTTCAAA----AATT--GACCATATCTTTAAGGAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45741514 150 - 122973662 CAT-CATCAAATTTATATCAAATCCTCCAGTGTGT-GAAACTGTCATAGTTACTTAAAATCCACAAA--------CTCAAATGGATGAAATGCAATTATTTGGGCA-TAGAACTTGTAT-CTTCTCCAGTATCTTCAAA----AACT--GACCATATCTTTAAGGAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138680449 153 - 171630274 TAT-CATCAGATTTATATCAAATCCTCCAGTGTGT-GGAACTGTCATAGTTACTTAAATTTCACAAA---------TAAAATGAATGAAATTTAATTACTTTGGTA-TAGAACTTGCAT-CTTTTCCAGTATCTTCGAAAATTAATT--GACCATCTCTTTAAGGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            236598 149 +   1154217 TAT-CATCAAATTTATATCAAATCCTCTAGTGTGT-GGAACTGTCGTAGTTACTTAAAATCCACAAG---------TCAAATGGATGAAATTTAATTATTTTGGTA-TAGAACTTGTAT-CTTTTCCAGTATCTTCAAA----AATT--GACCATATCTTTAAGGAAA
i saiBol1.JH378315         I 2377 C 0
s cebCap1.NW_016107339v1    14054041 149 +  15232693 TAT-CATCAGATTTATATCAAATCCTCCAGTGTGT-GGAACTGTCATAGTTACTTAAAATCCACAAA---------TCAAATGAATGAAATTTAATTATTTTGGTA-TAGAACTTGTAT-CTTTTCCAGTATCTTCAAA----AATT--GACCATATCTTTAAGGAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      303690 149 +    446445 TAT-CATCAAATTTATATCAAATCCTCCAGTGTGT-GGAACTGTCATAGTTACTTAAAATCCACAAA---------TCAAACGGATGAAATTTAATTATTTTGGTA-TAGAACTTGTAT-CTTTTCCAGTGTCTTCAAA----AATT--GACCAAATCTTTAAGGACA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4499693 150 + 123392446 TGT-CATCAAATTTATATCAAACCCTCCAGTGTGCAGGAAGTGTCATAGATACTTAAAGTCCACAAA--------CTCAAATTA--CACATGTAATTCTTTAGGCAATAGAACTTGTAT-CCTTTCCAATATTTTTAAA----AAGT--GAGCACATATTTATGGAAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      164894 152 +   1371726 TGT-CATCAAATTTACATCAAACCCTCCAGTGTGCAGGAAGTGTCATAGATACTTAAAGTCCACAAA--------CTCAAATGGACCAAATGTAATTCCTTAGGTAATAGAACTTGTAT-CCTTTCCAGTATTTTCAAA----AAGC--GAGCATGTATTTATGGACG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15356528 125 -  18854210 CGT-CATCAAACTTATATTGAACCCTCTAGTGTGCAGGAAGTATCATAGGA-----------------------------------CACATTTAATTCCTTGGGTACTAAAACTTGTAT-CCTTTCCTGTATCTTCAAA----ATGT--GATCATATATTTAGGGAAC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34363644 145 +  94987271 CAT-TTTCAAGTTTATATTGAA-CTTTTGGTGTA--GCAACCACCATAAACACTTCAAGAGCACAAC--------CTTGGGTACACAGATTTGAGGTTTTTAAATA--AATACT----T-CTTTACTAATTCCCTGAGA----ATTTCAAACCATCTGCTTTGATAAT
i mm10.chr17               C 0 I 713
s canFam3.chr12             70405184 147 -  72498081 GCT-TGTCAAATTTATA-------------TGCATAGGAACTGTAGTACATACTTAAAGTTCAGTACTTAATGGGCTTAAATGGGCCAGATTTAATTCTCTGGGTG-TAGAACTTGTACACTCCCCCCAGATCTCTGTA----AAAT--GACCATACAATTAGTGAAA
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            510939 152 +    935526 TATCCTTTAAATTAACATAGAACCTTCTGATGTGCAGGAACTATGAGAGATACATAAAGCCCATAAA--------CTCAAATGGACCAAATTTAATTCTTTGAATG-TAAGACATGTAT-CCTTCTCAGTACCTTCATA----AAGT--GACCACATACTTAGGGAAA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=776239.000000
s hg38.chr6_KI270758v1_alt     58202 212 +     76752 TCTGAGTATCTTACTACAT-ATTTTACAAAAGACTCATTGTTTCACAGTGTGTTATTAGAATTCTGAGAAAT--GCAATAAAATTCTAGAAACTG--------------------TAA---TCATCTGAA---GACTAAACTGGATCCACTGTGTAAACCAAAATTATAAATATTGACAGTTTTGGCAGGGACAGGGGAGAAAAGAT-GAAATCACTCCCTGCAGCATCATTTCCCACTGTC
s gorGor5.CYUI01000036v1     2427646 212 +   2807050 TCTGAGTATCTTACTACAT-ATTTTACAAAAGACTCACTGTTTCACAGTGTGTTATTAGAATTCTGAGAAAT--GCAATAAAATTCTAGAAACTG--------------------TAA---TCATCTGAA---GACTAAACTGGATCCACTGTGTAAACCAAAATTATAAATATTGACAGTTTTGGCAGGGACAGGGGAGAAAAGAT-GAAATCACTCCCTGCAGCATCATTTCCCACTGTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45741664 211 - 122973662 TCTGAGTATCTTACTATGT-ATTTTAC-CAAGACTCATTGTTTCACAGTGTGTTATTAGAATTCTGGGAAAT--GCAATAAAATTCTAGAAATTG--------------------TAA---TCATTTGAA---GACTAAACTGGATCCACTGTGTAAACCAAAATTATAAATATTGACAGTTTTGGCAGGGACAGGGGAGGAAAGAT-GAAATCACTCCCTGCAGCATCATTTCCCACTGTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138680602 211 - 171630274 TCTGAGTATTTTACTACAT-ATTTTACAAAAGATTCATTGTTTTACAGTGTGTTATTAGAATTTGGGGAAAT--GTGATAAAATTCTAGAAAGTG--------------------TAA---TTATTTGAA---GACTAAATTGGAGCCCCCGTGTAAGCAAAAATTATAAAGATTGACAGCTTTGGCAGGGACAGGGGAGGAAAGAT-GAAATCACTCCCTGGAACATCATTT-CCACTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            236747 211 +   1154217 TCTGAGTATTTCACTACAT-ATTTCACAAAAGATTCATTGTTTTACAGTGTGTTATTAGAATTTGGGGAAAT--GTGATAAAATTCTAGAAAGTG--------------------TAG---TTATTTGAA---GACTAAACTGGAGCCACTGTGTAAGCAAAAATTATAAAGATTGACAGCTTTGGCAGGGACAGGGGAGGAAAGAT-GAAGTCATTCCCTGCAGCATCATTT-CCACTGTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054190 209 +  15232693 TCTGTGTATTTTACTACAT-ATTTTACAAAAAATTCATTATTTTACAGTGTGTTATTAGAATTCGGGGAAAT--GTGATAAAATTCTAGAAAGTG--------------------TAA---TTATTTGAA---GACTAAACTGGAGCCACTGTGTAAGCAAAAATTAAAAAGATTGACAGCTTTGGCAGGGAC--GGGGGGAAAGAT-GAAGTCACGCCCTGCAGCATCATTT-CCACTGTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      303839 210 +    446445 TCTGAGTATTTTACTACAT-CTTTTACAAAAGACTCATTGTTTTACAGTGTGTTATTAGAATTTGGGGAAAT--GTGATAAAATTCTGGAAAGTG--------------------TAA---TTATTTGAA---GACTAAACTGGAGCCACCGTGT-AGCAAAAATTATAAAGATTGACAGCTTTGGCAGGGACAGGGGAGGAAAGAT-GAAGTCACTCCCTGCAGCATCATTC-CCACTGTC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4499843 209 + 123392446 TCTAAGAATTTTATTCCATAAATTGACATAGGACTCATTAATTCATAGTTTGTTATTAAAACTCTGAGAAAT--ATGAT----TACTAGGAAGTA--------------------TAA---TAATTTGAA---GAATAAACTAGACCCACTGCATAAACAAAAATCATATAGATTGACAGTGTTGGCAGGGACAGAGGAGGAAAGAT-AAAATCTCTCCCTGCATCACCATTTCCCACTGTC
i micMur3.chr6             C 0 I 244
s proCoq1.NW_012150019v1      165046 209 +   1371726 TCTAAGCATTTCACTCCATAAATTTACATAGGACTCATTAATTCATAGTTTGTTATTAAAATTTTGGAAAGT--ATGGT----TACTAGGAAGTA--------------------TAA---TAATGTGAG---GAATAAACTAGATCCACTACATAAACAAAAATCATATAGATTGACAGCATTGGCAAGGACAGAGGGGGAAAGAT-AAAATCACTCCCTGCATCACCATTTCCCACTGTC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15356653 208 -  18854210 TCTAAGAATTTTACTCCATAAATTTACACAAGACTCA-TAATTCGCAATATATTGTTAAAATTTTGGAAAATGCGTGGT----TACTAGGAA--A--------------------TAA---TAATTTGAA---GACAAAACTGGACCTGCTGCATAAACAAAAATCATACAAATTGACAGTGTTGGCGGGGATGGAAGAGAAAAGGT-AAAATCACTCCCTGCATCATGATTTCCCACTGTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34364502 200 +  94987271 TCTGAGAATATT-CCCCATGATTTTACACAAACCTTGTTATTTCACAG--TGCTGCTAAGATTCTGGGAAAT----AATTGGTTTCCAGGAATTG--------------------TAG---TAATTTGAA---GACTCAGCTAGATCTACCACATGCACAGAATCTGTAAAGACTGACAGTCTTGGTGTGCTTGAAGAGGAGCAGACAAAAATCACCCTTAGAAACAACTCTC---------
i mm10.chr17               I 713 C 0
s canFam3.chr12             70405331 230 -  72498081 TTTGAGAATTTTACTCCCGAACTTTACACAGAACTCATTATTTCACAGGGTGTTCTTAAAATTCTGGACAAT--GAAAAAAAATTCTGGACAATGTATATAGTTACTAGGTAGAATAG---TTATGTGAA---GACTAGACTGCATTCAC-ATACAAGCAAAAATAATAAGTATCAACAGAAGTGGCA-GGATGGAAGAAGAAAGAC-TAAATTGCTCCCTGCATCATAATCC-CCCCCGTT
i canFam3.chr12            C 0 I 4
s dasNov3.JH569424            511091 197 +    935526 --ACAGAATTTCACTCCATAACTTTGCACAGAGCTCA---------------TTATAAAAACTCTGGGAAATGTGTAAT----TACCAGAAAGTA--------------------TAAGAGTAAACTCGATCTGACTAAACTAGATTTGACAGGTAAAC-AAAATCATAAATATATACAGTTTTGCCAGGGATGGAAGAGGAAAGAC-AAAACTACTCTGTGTGG--TGAGTTACCACTGTC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=651660.000000
s hg38.chr6_KI270758v1_alt     58414 222 +     76752 ----CGTGTGTGTGAGAATTGAAACGTCCAAGGTTAGCAGATGCCATTGAGTACATATAGGCCCAAGTCTTGGATATGCTACGTGTTTCTCCCACG--GATTTTGATTCTAAATTAATAAACACGTT-------TAGCCATGGGAGCGCATGTTGAGAAGTTTCATGAGCCTCGT---ATTTTCTGCCATTGGACGTAGATATTTATAAGGTTTCGATTTTTGAGAATATCCTCCTAC
s gorGor5.CYUI01000036v1     2427858 221 +   2807050 ----TGTGTGTGTGAGAATTGAAACGTCCAAGGTTAGCAGATGCCATTGAGTACATATAGGCCCAAGTCTTGGATATGCTACGTGTTTCTCC-ATG--GATTTTGATTCTAAATTAATAAACACGTT-------TAGCCACGGGAGCGCATGTTGAGAAGTTTCATGAGCCTCGT---ATTTTCTGCCATTGGACGTAGATATTTATAAGGTTTCAATTTTTGAGAATATCCTCCTAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45741875 222 - 122973662 ----CGTGTGTGTGAGAATTGAAACGTCCAAGGTTAGCAGATGCCATTGAGCACATATAGGCCCAAGTCTTGGATATGCTACATGTTTCTCCCATG--GATTTTGATTCTAAATTAATAAACACGTT-------TAGCCACGGGAGCGCATATTGAGAAGTTTCATCAGCCTCGT---ATTTTCTGCCATTGGACGTAGATATTTACAATGTTTCAATTTTTGAGAATATCTTCCTAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138680813 229 - 171630274 ----TCTATGTGTGAGAATTGACACGTCCAGCTTTAGCAGACGCCACTGAGTACATATAGGCTGAAGTTTTCGATATGCCACGTGTTTATCCCATG--GATTTTGATTCTAAATTAATAAACATGTTTAGAAAATAGCCACAGGAATGCATGTTAAGAAATTACACGAGCCTCGT---ATTTTCTGCCACTGGACATAGACATTTATAAGGTGTCAATTTTTGAGAATATCCTCCTAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            236958 229 +   1154217 ----TATATGTGTGAGAATTGACACGTCCAGTGTTAGCAGATGCCACTGAGCACATATAGGCTGAAGTCTTGGACATGCCACGTGTTTATCCCATG--GATTTTGATTCTAAATTAATAAACATGTTTAGGAAATAGCCACAGGAATGCATGTTGAGAAATTACACGAGCCTCAT---GTTTTCTGCCACTGGACATAGACATTTATAAGGTTTCAATTTTTAAGAATATCCTCCTAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054399 229 +  15232693 ----TATATGTGTGAGAATTGACACGTCCAGTGTTAGCAGATGCCACTGAGTACATATAGGCTGAAGTCTTTGATATGCCACGTGTTTCTCCCATG--GATTTTGATTCTAAATTAATAAACATGTTTAGGAAATAGCCTCAGGAATGCATGTTGAGAAATTACACGAGCCTCGT---ATTTTCTGCCATTGAACATAAACATTTATAAGGTTTCAATTTTTGAGAATATCCTCCTAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304049 229 +    446445 ----TACATGTGTGAGAATTGACATGTCCAGTGTTAGCAGATGCCACTGAGTACATATAGGCTGAAGTCTTCGATGTGCCACGTGTTTATCCCATG--GATTTTGATTCTAAATTAATAAACATGTTTAGGAAATAGCCACAGGAATGCATATTGAGAAATTACATGAGCCTCGT---ATTTTCTGCCACTGGACATAGACATTTATAAGGTTTCAATTTTTGAGAATATCCTCCTAC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      165255 226 +   1371726 ----TACATCTGAGAGAATC--ATTTTCCAAGGTTAGCAAATGCCATTGAGGGC--ATAGGCCCGAATCCTCGAGAGCCTACACTTTTCTCCCATG--GATTCTCAATCTACATTGCTAAATACGTTTAGGAAATATCCACAGGGACACATGCTGAGAAGTCGAATGGGCCTCGTC--ATTTTCTGCTATTGGACATAGATATTTATAAAATTTTCATCTTTGAGAATATTCTCTCAC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15356861 225 -  18854210 ----TACATCGAGAGGATTT--ATTATCCAAGCTTAGCAAAGGCCATGGAAGGC--ACCGGCCCTAATTTTCAATATCCT-CGTTTTTCTCCAGTG--GATTTTGAATCTACATTAATAAGTGTACTTGGGAAATATATGCAGGGGCACATGTTGAGAAGTCAAACGGGCCTCATC--ATTTTCTGCTATTGGATGTAGATATTTGTAAGATTTTGATCTTTGAGATTATTCTTTCAC
i otoGar3.GL873550         C 0 I 72
s mm10.chr17                34364702 157 +  94987271 ----------------------------TGACATCAGCAAATGTTTTTAAGGAC--ATAGGACTAAGTCTTGGGTAGCCTTCATATTTCCCTTATACCAAGTCCCAGTCTAAATTAACAGACAGGAGCATGACACGCCTAGAGGACCATCTGG-------------------------GCTTTCTTCCTCTA--------------------------TTTTGAGAAGCCTCTCTTAC
i mm10.chr17               C 0 C 0
s canFam3.chr12             70405565 213 -  72498081 ----TTTGTGAATAAGAGTTGACTT-TTCAAGGTTAGCAAATA---------------AGGCCAACATCTTGCATAATTGATTTGTTTCTCCCACT--GATTTTGGGTCTCAATCA-TAAACATATTCATGAAATATCCAGAGGGGCACATGTTGAGAAGTTAAATGGACTCTATC--ATTTTTTGCCACTGGATGCACATATTTATAAAATCTGGATATTTGAGAATATTCTTTTAC
i canFam3.chr12            I 4 C 0
s dasNov3.JH569424            511288 228 +    935526 TATATTTGGGAGTGAGAATG--ATTTTCCAAGGTTAGCAAATCACATTGTGGAT--AAAGGCCAAAATCTTGGATAATCAACTTGTTTCTCCCATG--GGTTTTGAATCTAAATAAATAAA----TTCAGGAATCATCATGAGGGACACATGTTGTGAAGTTAAATGTACTTTCTCCAATTTTATGTCATTGGACATACATATTCATAAGATTTTAATCTTTGAGAATATTCTCTTAC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500052 244 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=16877.000000
s hg38.chr6_KI270758v1_alt     58636 12 +     76752 TCCGTATGTTAA-
s gorGor5.CYUI01000036v1     2428079 12 +   2807050 TCCCTATGTTAA-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742097 12 - 122973662 TCCCTATTTTAA-
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681042 12 - 171630274 TCAATATTTTAA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237187 12 +   1154217 TCAATATTTTAA-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054628 12 +  15232693 TCAATATTTTAA-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304278 12 +    446445 TCAATATTTTAA-
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      165481 12 +   1371726 TCACTTTTTTTT-
i proCoq1.NW_012150019v1   C 0 I 5
s mm10.chr17                34364859 12 +  94987271 TCAGCATCTTCC-
i mm10.chr17               C 0 I 1
s canFam3.chr12             70405778 12 -  72498081 TCACTTTCTTTC-
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            511516  9 +    935526 ----TCTTTTGCA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500052 244 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15357086 72 -  18854210 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=65152.000000
s hg38.chr6_KI270758v1_alt     58648 14 +     76752 TCCTGTCCATGTGA
s gorGor5.CYUI01000036v1     2428091 14 +   2807050 TCCTGTCCATGTGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742109 14 - 122973662 TCCTGTCCGTGTGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681054 14 - 171630274 TCCTGTCCATGTAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237199 14 +   1154217 TCCTGTCCATGTGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054640 14 +  15232693 TCCTGTCCATGTGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304290 14 +    446445 TCCTGTCTATATGA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4500296 14 + 123392446 TCCTGTCCATGTGA
i micMur3.chr6             I 244 C 0
s proCoq1.NW_012150019v1      165498 14 +   1371726 TCCTGTCCATGTGA
i proCoq1.NW_012150019v1   I 5 C 0
s mm10.chr17                34364872 12 +  94987271 TGTCGTCCAAGT--
i mm10.chr17               I 1 C 0
s canFam3.chr12             70405791 14 -  72498081 TCCTATCCATGTGA
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            511525 14 +    935526 TCCTGCCCATGTGA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15357086 72 -  18854210 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=7095.000000
s hg38.chr6_KI270758v1_alt     58662 18 +     76752 CCCATGCCCTGGCCGAAG
s gorGor5.CYUI01000036v1     2428105 18 +   2807050 CCCATGCCCTGGCCAAAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742123 18 - 122973662 CCCATGCCCTGGCCATAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681068  7 - 171630274 CCCA---------AAA--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237213  9 +   1154217 CCCA---------AAAAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054654  9 +  15232693 CCCA---------AAAAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304304  9 +    446445 CCCA---------AAAAG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4500310 17 + 123392446 TCCATGTCCTG-TCAAAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      165512 17 +   1371726 TCCACGCCCTG-TCAAAG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15357158 18 -  18854210 cctatgccctgagcagag
i otoGar3.GL873550         I 72 I 118
s mm10.chr17                34364884 17 +  94987271 CTCATGTTTAATCAAAA-
i mm10.chr17               C 0 C 0
s canFam3.chr12             70405805 18 -  72498081 TTCATGTCTTGGTCAAAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            511539 18 +    935526 TCTATGCTTTAGTTAAAG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=266801.000000
s hg38.chr6_KI270758v1_alt     58680  99 +     76752 TTATTTTGTTCTCAGGGACAGA--------------------------------------ATAAA--------TGTTGGATTTGAACATTTA--CCTTACCTC-------------------------------------------TTAATC-ATCCCA-------------------GAATGA-TTTA----------------------------------GGAATaca---------aagaata---------------------aaaataa
s gorGor5.CYUI01000036v1     2428123  99 +   2807050 TTATTTTGTTCTCAGGGACAGA--------------------------------------ATAAA--------TGTTGGATTTGAACATTTA--CCTTACCTC-------------------------------------------TTAATC-ATCCCA-------------------GAATGA-TTTA----------------------------------GGAATaca---------aagaata---------------------aaaataa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742141  99 - 122973662 TTATTTTGTTCTCAGGGACAGA--------------------------------------ATAAA--------TGTTGGATTTGAACATTTA--CCTTACCTC-------------------------------------------TTAGTC-ATCCCA-------------------GAATGA-TTTA----------------------------------GGAATaca---------aagaata---------------------aaaataa
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681075  97 - 171630274 --ATTTTGCTCTCAGGAACTAA--------------------------------------ATAAA--------TGTTGGATTTTAAAATTTA--CCCTACCTC-------------------------------------------TTAATC-ATCCCA-------------------GAATGA-TTTA----------------------------------GGTATACA---------AAACATA---------------------AAAATAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237222  99 +   1154217 TTATTTTGTTCTCAGGGACAGA--------------------------------------ATAAA--------TGTTGGATTTGAAAACTTA--CCCTACTTC-------------------------------------------TTAATC-ATCCCA-------------------GAATGA-TTTA----------------------------------AGTATACA---------AAACATA---------------------AAAATAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054663  99 +  15232693 TTATTTTGTTCTCAGGGACAGA--------------------------------------ATAAA--------TGTTGGATTTGAACATTTA--CCCTACCTC-------------------------------------------TTAATC-ATCCCA-------------------GAATGA-TTTA----------------------------------GGTATACA---------aaacata---------------------aaaataa
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304313  99 +    446445 TTATTTTGTTCTCAGGGACAGA--------------------------------------ATAAA--------TGTTGGATTTGAAAATTTA--CCCTACCCC-------------------------------------------TTAATC-GTCTCA-------------------GAATGA-TTTA----------------------------------GGTATaca---------aagcata---------------------aaaataa
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4500327 101 + 123392446 TTATTTTGTTCTCAGGGACAGA---------------AG---------------------ATAA---------TATTGGATTTGAAAATGTG--TCTTATCTC-------------------------------------------TTAATCTGTCTCT-------------------GGGTGG-TTTA----------------------------------GGaataca---------aaaaata---------------------aaaataa
i micMur3.chr6             C 0 I 191
s proCoq1.NW_012150019v1      165529 102 +   1371726 TTATTTTGTTCTCAGGGACAGA---------------AGA--------------------ATAA---------TATTGGATTTGAAAATATG--TCTTATCTC-------------------------------------------TTAATCTGTCTCA-------------------GAATAG-TTTA----------------------------------GGAATAAA---------AAACATA---------------------AAAATAA
i proCoq1.NW_012150019v1   C 0 I 2
s otoGar3.GL873550          15357294 242 -  18854210 ttttttttttttatgaggtggggtctcactctcactcag---------------------acaagtctccaactcctaaactcaagcagttc--tccttcctcagccttccacagtgctgggatgataggcgtaagccgccgcgcctggcTCTGCCTCACTTTTTTAAACTCCTGTTCATGTGA-TCCAAGCCATGGCCAAAGTATCATTCTTCTGTTCTCAGGGACTGGA---------AACGATGTCTTATCTCTTAATCTGTCCCACAGTGA
i otoGar3.GL873550         I 118 I 24
s mm10.chr17                34364901 113 +  94987271 TTACTTCGTTGTCAAGGTCAGG---------------AGGGAAAAGGGAATTGAGGTTACAAAAA--------AGTTAGATTTGAAAATGTATTTTTTAACTT-------------------------------------------GTAGTCTATCCTA-------------------GAAGAC-TGCA-------------------------------------------------------ACA---------------------AAGATAG
i mm10.chr17               C 0 C 0
s canFam3.chr12             70405823 108 -  72498081 CTATTTTGTTTTCAGATACAGA---------------AAA--------------------GAAAA--------GACTGGATTT-AAAATTTA--TTGTTCCTC-------------------------------------------TGACTC----TGA-------------------GGATGACTTTA----------------------------------GGAACACACAAaaaaataaaaata---------------------aaaataa
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            511557 103 +    935526 TTATTTTGTTTTCAGGGATAGA---------------AG---------------------AAAAC--------TCTTGGATGTGAAAATTTA--TCTTACTTC-------------------------------------------TTACTCCATCCCT-------------------GGATGACTTTA----------------------------------AGAATACT---------AAAAACA---------------------AAATTAA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=313049.000000
s hg38.chr6_KI270758v1_alt     58779 105 +     76752 gcaaaca-aacaaaataagaaaATGCTCCAGCCAGCCTCATCCCTAAGTGGAATGCAA-TCCCCCT-TAAGCTTTTCTCCCTTCCCCAAGCCCTCCACATCCCCTTCT
s gorGor5.CYUI01000036v1     2428222 105 +   2807050 gcaaaca-aacaaaataagaaaATGCTCCAGCCAGCCTCATCCCTAAGTGGAGTGCAA-TCCCCCT-TAAGCTTTTCTCCCTTCCCCAAGCCCTCCACATCCCCTTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742240 105 - 122973662 gcaaaca-aacaaaacaagaaaATGCTCCAGCCAGCCTCATCCCTAAGTGGAGTGCAA-TCCCCCT-TAAGCTTTTCTCCCTTCCCCAAGCCCTCCACATCCCCTTCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681172 104 - 171630274 ACAAACA-AACAAAACAAGAAAATACTCCAGCCAGCCTCATCTCTGAGTGGAGTACAA-TCCCCCT-TAAGCTTTTCTCCCTTCCCCAAGCCC-CCGCATCCCCATCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237321  90 +   1154217 GCAAACA-AACAAAATAGGAAAATGCTCCAGCCAGCCTCATCCC---------------TCCCCCT-TAAGCTTTTCTCCCTTCTCCAAGCCC-CCACACCACCATCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054762 104 +  15232693 gcaaaca-aacaaaACAGGAAAATGCTCCAGCCAGCCTCACCCCTGAGTGGAGTGCAA-TCCCCCT-TAAGCTTTTCTCCCTTCCCCAAGACC-CCACATCACCATCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304412 105 +    446445 gcaaaca-aacaaaacaaGAAAATGCTCCAGCCAGCCTCATCCCTGAGTGGAGTGCAATCCCCCCT-TAAGCTTTTCTCCCTTCCCCAAGACC-CCACATCATCATCT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      165633 106 +   1371726 ACAAATA-AACAAAATAAGATGACATCCCAGCCAGGCTCTTCCCTTGGTGGAGTATAA-TTCCCCCTTAAGCTTTGCTGTCTTCCCTACGCCCTCCGTACCCCAACCT
i proCoq1.NW_012150019v1   I 2 I 66
s otoGar3.GL873550          15357560 104 -  18854210 AAAAACA-AACAAAACAAGAAGAGGCCCCAGCCAATCTCCTCCCTAAGTGGACTGTAA-TTCCCCC-TAAGCTCTGCTCTCTTCCCCAAGCCCTTTATACTCCCATC-
i otoGar3.GL873550         I 24 C 0
s mm10.chr17                34365014  96 +  94987271 ----AAA-AACAAAACAAGAA-ATCTTGTAGCCAGTCCCAGCTCCC-GTGGGAGGCCA-TTGGCCC-AGAGCT---CTGTCCTCCCCAAGCTGCCCTCACCCCACCCC
i mm10.chr17               C 0 C 0
s canFam3.chr12             70405931 106 -  72498081 aTGAGCATAACAAACCTAGAAACAACTCCAGCTAGTCTCATCCCTAAGTGGAGTTTAA-TTCCCCTATAAGCTTTGTTCTCTCAACCAAGCCT-TTGAATCCCCCTCT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            511660 103 +    935526 --AAACAAAACAAGGCAAGAAAACCCTCCAGCCA-TCTCACTCCCAGTTGAACTTAAT-GCCCTCT-TTAGCTCTTTCCTCTTCCAGGAGCCTTCTGATGCCGCTTCT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500428 191 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=137363.000000
s hg38.chr6_KI270758v1_alt     58884 68 +     76752 TTCCTCCCAGTGAAATTGCTGCCCACTCATCCACTTGAAAGG-ACTCCAGGCTTTGGTTGCTTTCTCT---G
s gorGor5.CYUI01000036v1     2428327 68 +   2807050 TTCCTCCCAGTGAAATTGCTGCCCACTCATCCACTTGAAAGG-ACCCCAGGCTTTGGTTGCTTTCTCT---G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742345 71 - 122973662 TTCCTCCCAGTAAAATTGCTGCCCACTCATCCACTTGAAAGG-ACTCCAGGTTTTGGTTCCTTTTTCTCTGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681276 71 - 171630274 TTTCTCCCAGTGAAATTGCTTTCCTCTCAGCCACTTGAAAGG-ACTCTATGCTTCAGTTTCTTTTTCTCTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237411 71 +   1154217 TTTCTCCCAGGGAAATTGCTTTCCACTCAGCCACTTGAAAGG-ACTCTTTGCTTCGGTTTCTTTTTCTCTGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054866 71 +  15232693 TTTCTTCCAGTGAAATTGCTTTCCACTCAGCCACTTGAAAGG-ACTCTACACTTCGGTTTCTTTTTCTCTGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304517 71 +    446445 TTTCTCCCAGTGAAATTGCTTTCCACTCAGCCACTTGAAAGG-ACTCTACGCTTCGGTTTCTTTTTCTCTGT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15357664 61 -  18854210 --CCTCTCAGTGAAGTCACAGCTCACACAAATACCTGAAGAG-A-------TTTTGGCTCCTTGATCTCTA-
i otoGar3.GL873550         C 0 I 1
s mm10.chr17                34365110 65 +  94987271 CACCCCCGGGGGATGTTGCTGACCACACA--CATGTGTGGAG-GCTCCA---TCGGCTTCCTTGGTCTCTG-
i mm10.chr17               C 0 I 1
s canFam3.chr12             70406037 71 -  72498081 TTCTTCTCAGTGAAGTTACTGACTATATAACCACTTATTAGACACTCTAGGTTTTG-TTCCTTGATCTCCAC
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            511763 67 +    935526 ---CACTCAGAGAAGT-ACGAGCTGTAAAACTTCTTGAAGAG-ACTCCAGGTTTTAGTTCCCTGACCTCTCT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500428 191 + 123392446 I
e proCoq1.NW_012150019v1      165739 66 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=196371.000000
s hg38.chr6_KI270758v1_alt     58952 39 +     76752 CCCCAGGTCTGGGTTCTTCCCCACTGATCACTGTGGAGG
s gorGor5.CYUI01000036v1     2428395 39 +   2807050 CCCCAGGTCTGGGTTCTTCCCCACTGATCACTGTGGAGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742416 39 - 122973662 CCCCAGGTCTGGGTTCTTCCCCACTGATCACTGTGGAGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681347 39 - 171630274 CCCCAGGTCTGGGTTCTTCCCCACTGATCACTGTGGAAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237482 39 +   1154217 CCCCAGGTCTGGGTTCTTCCCCACTGATCACTGTGGAAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054937 39 +  15232693 CCCCAGGTCTGGGTTCTTCCCCACTGATCACTGTGGAAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304588 39 +    446445 CCCCAGGTCTGGGTTCTTCCCCACTGATCACTGTGGAAG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      165805 39 +   1371726 CCCCAGGTCTGGGTTCTTCCCCGCTGATCACCATGGAGG
i proCoq1.NW_012150019v1   I 66 I 8
s otoGar3.GL873550          15357726 39 -  18854210 CCCCAGCTCTGGGCTCTTCCCCGCTGATCACCATGGAGA
i otoGar3.GL873550         I 1 C 0
s mm10.chr17                34365176 39 +  94987271 CCCCAGCGGTGGGTTCCACCCCACGGATCACCAGGGAGG
i mm10.chr17               I 1 I 1
s canFam3.chr12             70406109 39 -  72498081 CCGCAGGTCTGGGTTCTTCTCCGCAGATCACCATAAAAG
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            511830 39 +    935526 TTCCAGGTCTAGGTTCTTCCCCGCTGGTCACCATGGAGG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500428 191 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=14524.000000
s hg38.chr6_KI270758v1_alt     58991 8 +     76752 GGCAAGAA
s gorGor5.CYUI01000036v1     2428434 8 +   2807050 GGCAAGAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742455 8 - 122973662 GGCAAGAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681386 8 - 171630274 GGCGAAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237521 8 +   1154217 GGCGAAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054976 8 +  15232693 GGCGAAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304627 8 +    446445 GGCGAAAA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15357765 8 -  18854210 GGCTGAAG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34365216 7 +  94987271 CTTGAAA-
i mm10.chr17               I 1 C 0
s canFam3.chr12             70406148 8 -  72498081 AACAAAAG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            511869 8 +    935526 GGCTGAAG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500428 191 + 123392446 I
e proCoq1.NW_012150019v1      165844 8 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902 7 - 173848474 I
e panTro5.chr6             142758252 7 - 175400573 I

a score=55802.000000
s hg38.chr6_KI270758v1_alt     58999 12 +     76752 GATGGAGAAATG
s gorGor5.CYUI01000036v1     2428442 12 +   2807050 GATGGAGAAATG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742463 12 - 122973662 GATGGAGAAATG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681394 12 - 171630274 GATGGAGAAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237529 12 +   1154217 GATGGAGAAATG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054984 12 +  15232693 GATGGAGAAATG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304635 12 +    446445 GATGGAGAAATG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      165852 12 +   1371726 GCTGGAGAAACA
i proCoq1.NW_012150019v1   I 8 C 0
s otoGar3.GL873550          15357773 12 -  18854210 GATGGAGACGCA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34365223 12 +  94987271 GATGGAGGCATG
i mm10.chr17               C 0 C 0
s canFam3.chr12             70406156 12 -  72498081 GATGGAGAAATA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            511877 12 +    935526 AATGGAGAAAAA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500428 191 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=1487026.000000
s hg38.chr6_KI270758v1_alt     59011 311 +     76752 CAGCTGATATGCTCTTCAGATGGGTGGTTCCCACAGCCCCACGTGCAGTGGAGGGACATGGAAGGAAAGACGATACCATCCTCTTCCCAGGCCCTGACTCAAGGCAGCCATGGGCTGTTCCACGTGCAGACATTGCTAAGGGTCACAAACATCTCCGCTGTGGACGTCACTTGTTCCATCAGCATCCCCTTTTTGGGCGAGGAGAAAATCGCAACTTTTTCTCTCTCAGGTTGGTGATTCCTTATGTTCCT-TCAGGTTTGGAAAATAAATATGA---------------------------------------------------------------------------------------------AGACCAACTCAGACTT-------------------------------------------------------ACTCATCGTATTGC-----------------------------------------------------------------TCTTCTT
s gorGor5.CYUI01000036v1     2428454 311 +   2807050 CAGCCGATGTGCTCTTCAGATGGGTGGTTCCCACAGCCCCACGTGCCATGGAGGGACATGGAAGGAAACACGATACCATCATCTTCCCAGGCCCTGACTCAAGGCAGCCACGGGCTGTTCCGCGTGCAGACATTGCTAAGGGTCACAAACATCTCCGCTGTGGACGTCACTTGTTCCATCAGCATCCCCTTTTTGGGCGAGGAGAAAATCGCAACTTTTTCTCTCTCAAGTTGATGATTCCTTATGTTCCT-TCAGGTTTGGAAAATAAATATGA---------------------------------------------------------------------------------------------AGACCAACTCAGACTT-------------------------------------------------------ACTCATCGTATTGC-----------------------------------------------------------------TCTTCTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742475 311 - 122973662 TAGCTGATGTGCTCTTCAGATGGGTGGTTCCCACAGCCCCACGTGCAGTGGAGGGACATGGAAGGAAAGACGATACCATCATCTTCCGAGGCCCTGACTCAAGGCAGCCATGGGCTGTTCCACGTGGAGACATTGCTAAGGGTCACAAACATCTCCGCTGTGGACGTCACTTGTTCCATCAGCATCTCCTTTTTGGGCGAGGAGAAAATCGCAACTTTTTCTCTCTCAGGTTGGTGATTCCTTATGTTCCT-TCAGGTTTGGAAAATAAATATGA---------------------------------------------------------------------------------------------AGACCAACTCAGACTT-------------------------------------------------------ACTCATCGTATTGC-----------------------------------------------------------------TCTTCTT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681406 311 - 171630274 CAGCTGATGTGCTCTTCAGATGGGTGGTTCCCACAGCCCCACGTACAGTGGAGGGACATGCAAGGAAGGACAATACCATCATCTTCCGAGGCCCTGACTCAAGACAGCCGTGGGCTGTTCCATGTGGAGACATTACTATGGGTCACAAACATCTCCACTGTGAACGTCACTTGTTCCATCAGCATCCCCTTTTTGGACGAGGAGAAAAGAGCAACTTTTAATCTCTCAGGTTGGTGATTCCATATATTCCT-TCAGGTTTGGAAAATAAATATGA---------------------------------------------------------------------------------------------AGACCAACTCAGACCT-------------------------------------------------------ACTCGCCGTATTGC-----------------------------------------------------------------TCTTCTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237541 303 +   1154217 CAGCTGATGTGCTCTTCAGATGGCTGGTTCCCACAGCCCCACGTAGAGTGGAGGGACATGCAAGGAAAGACGATACCATCATCTTCCGAGGCCCTGACTCAAGGCAGCCATGGGCTGTTCCACGTGGAGACATTGCTATGGGTCACAAACAACTCCACTGTGAACGTCACTTGTTCCATCAGCATCCCCTTTTTGGGCGAGGAGAAAAGAGCAACTTTTTCTCTCTCAGGTTGGTGATTCCGTATGTTCCT-TCAGGTTTGGAAAATAAATATGA---------------------------------------------------------------------------------------------AGACCAACTCAGACCT-------------------------------------------------------ACTC--------AC-----------------------------------------------------------------TCTTCTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14054996 311 +  15232693 CAGCTGATATGCTCTTCAGATGGGTGGTTCCCACAGCCCCACATACAGTGGAGGGACATGCAAGGAAAGACGATACCATCGTCCTCCGAGGCCCTGACTCAAGGCAGCCATGGGCTGTTCCACGTGGAGACATTGCTACAGGTCACAAACATCTCCACTGTGAACGTCACTTGTTCCATCAGCATCCCCTTTTTGGGCGAGGAGAAAAGAGCAACTTTTTCTCTCTCAGGTTGGTGATTCCATATGTTCCT-TCAGGCTTGGAAAATAAATAGGA---------------------------------------------------------------------------------------------AGACCAACTCAGACCT-------------------------------------------------------ACTCACTGTATTGC-----------------------------------------------------------------TCTTCTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304647 311 +    446445 CAGCTGATGTGCTCTTCAGATGGGTGGTTCCCACAGCCCCATGTACAGTGGAGGGACATGCAAGGAAACACGATACCATCATCTTCCGAAGCCCTGACTCAAGGCAGCCATGGGCTGTTCCATGTGGAGACATTGCTATGGGTCACAAACATCTCCACTGTGAACGTCACTTGTTCCATCAGCATCCCCTTTTTGGGCGAGGAGAAAAGAGCAACTTTTTCTCTCTCAGGTTGGTGATTCCATATGTTCCT-TCAGGTTTGGAAAATAAATACGA---------------------------------------------------------------------------------------------AGACCAGCTCAGACTT-------------------------------------------------------ACTCACTGTATTGC-----------------------------------------------------------------TCTTCTT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4500619 310 + 123392446 CAGCTGACCTGCTCCTCGGGTGGGTGGTTCCCGCGGCCCCTCGCTCGGTGGAGGGACGCGGAAGGGAAGACACTGCCACCATCTTCCGAGAACCTGACTCAAGGCAGCCACGGGCTGTTCCACGTGGAGACATTTCTGTCCCTCATGAACATCACCGCTGCGAAGGTGACTTGTTCCATCAGCAGCCCCCTTCTGGGTGAGGAGAGAACGGCGACTTTTTCCCTCTCAGGTTGGTGATTCCACACGTTCCTCTCAGGTCTGGGAAACAAACATCA-----------------------------------------------------------------------------------------------ACCAACCCAAACTT-------------------------------------------------------ACTCATTTTACTGC-----------------------------------------------------------------TCTTCTT
i micMur3.chr6             I 191 I 192
s proCoq1.NW_012150019v1      165864 312 +   1371726 CAGCTGACGTGCTCTTCAGATGGGTGGTTCCCGCGGCCCCACGTACAGTGGAGGGACACAGAAGGGAAGACAATGCCACCATCTTCTGAGAACCTGACTCAAGGCAGCCACGGGCTGTTCCACGTGGAGACATTTCTGTTGGTCACGAACATTACTGCTGGGAATGTGACTTGTTCCATCAGCAGCCCCCTTCTGAGTGAAGAGAAAACAGCAACTTTTTCTCTCTCAGGTTGGTGATTCCATATGTTCCCCTCAGGTTTGGGAAACAAACATCA---------------------------------------------------------------------------------------------AGACTAACCCAAACTT-------------------------------------------------------ACACATTTTATTGC-----------------------------------------------------------------TTTTCTT
i proCoq1.NW_012150019v1   C 0 I 35
s otoGar3.GL873550          15357785 308 -  18854210 CAGCTGATGTGCTCTTCCCACGGGTGGTTCCCACAGCCGCATGTGCAGTGGAAGGACAGGGACGGGAAGCCAATACCAGCGTTTTCTGAGACCGTGACTCAAGACAGCCATGGGCTGTTCCACGTGGAGACATTTCTG---GTCACAAACATCTCTGCTGTAAAGGTGACTTGTTCCCTCAGCAGCCCCCTTTTAGGGGAGGAGAAAGCAGCCACTTTTTCTCCCTCAGGTTGGTGATCCCATGTATTGATCTCGGGTTTGGTAAATAGATATCA---------------------------------------------------------------------------------------------AGACC-ACCTAGACTT-------------------------------------------------------ACTCATTTTACTGC-----------------------------------------------------------------TCTTTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34365235 520 +  94987271 CAGCTGAGGTGTACGTCTGATGGGTGGTTCCCACGGCCCCATGTGCAGTGGAGGGACAGAGATGGAAAGACAATGCCATCGTTTTCCGAGGCCTTTCAGCAAGGGAGCCAGGAGCTGTTCCAGGTGGAGACACTTCTGCTGGTCACAAACGGCTCCATGGTGAATGTGACCTGCTCCATCAGCCTCCC---TCTGGGCCAGGAGAAAACAGCCCGTTTCCCTCTCTCAGGTTGGTGACTGCATACCTTCC--TCTGGCTTGGGAACCAAGTATCAAATGGCTTGGGCTCTATGTTTTTttgtttttgttggttttgttgttgttgttgttgttttgttgtGTTtttctttgagaggtttcatgtattcaggctagcctgggacttcggatcctcctgcctctgcgtcacaagctctgggattacaggtgtgcaccccacactcAACCTATTGCTGCTGTCCCTTCTGCTCCCTCTTCcctcctcctcctccttctgccatttctcctcttcctcctcttcttctt
i mm10.chr17               C 0 I 15
s canFam3.chr12             70406168 307 -  72498081 GAGCTGATATGCAGTTCAGAAGGGTGGTTCCCAGAGCCCCATGTAAAGTGGAAGGACATGGAAGGAAAGATAATACCAGCATTTTCAGAGGTTATGACTGAAGGCAGCCATGGGCTATTCCATGTGGAGACATCTCTATTGGTCACGAATAGCTCTATTGTGAATGTAACTTGTACCATTAGCAACCCCCATCTTGACGAGGAGAAAATGGCAAATTTTTCTCTCTCAGGTTGGTGATTCCATGTGTTTCTCTCAACTTTGGGAAATATATATGA---------------------------------------------------------------------------------------------AGACAAACCCAAACTT-------------------------------------------------------ATTT----TATTGC-----------------------------------------------------------------TCTACT-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            511889 309 +    935526 CAGCTGATGTGCACCTCGGATGGGTGGTTCCCACAGCCCCAGGTCCAGTGGAGAGACGGGGAAGGAAAGGCATTACCATCATTCTCTGGGGCCCTGACTCAAGGCAGTCATGGGCTGTTCCACGTGGAGACCTCTCTAGTGATCAGAAACCACTCCACGGCAAGCGTGACCTGTTCCATCAGCAACCCCCTTCTGGGTCAGGAGAAAATGGCAACTTTTTCTCTTTCAGGTTAGTAATTCCATATGTTCCTCTCAGCTTTGGTAGATAAACATCA---------------------------------------------------------------------------------------------ACTCAGACT--GACTT-------------------------------------------------------ACTCATTTTATTGC-----------------------------------------------------------------TTTTCT-
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=112711.000000
s hg38.chr6_KI270758v1_alt     59322 37 +     76752 CCTTTTTGAT--------------------------------TTTTATTTGCTGCTCTCTGATGAGGTC
s gorGor5.CYUI01000036v1     2428765 37 +   2807050 CCTTTGTGAT--------------------------------TTTTATTTGCTGCTCTCTGGCGAGGTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742786 37 - 122973662 CCTTTTTGAT--------------------------------TTTTATTTGCTGCTCTCTGACGAGGTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681717 37 - 171630274 CCTTTTTGAT--------------------------------TTTTATTTGCTTCTCTCTGACGAGGTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237844 37 +   1154217 CCTTTTTGAT--------------------------------TTTTATTTGCTTCTCTCTGACGAGGTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055307 37 +  15232693 CCTTTTTGAT--------------------------------TTTGATTTGCTTCTCTCTGACGAGGTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304958 37 +    446445 CCTTTTTGAT--------------------------------TTTTATTTGCTTCTCTCTGACGAGGTC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15358093 37 -  18854210 GTCTTAACAT--------------------------------TTTTATTTTCTTCTCTCTGATGACGTA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34365770 69 +  94987271 cctcctTTATCTTCTTACTCTTTTCTTCTTTTCCTCTTCCTATTTTATTTTCTTCTCCATGGTGGAGta
i mm10.chr17               I 15 I 13
s canFam3.chr12             70406475 37 -  72498081 ATTTTTAAAT--------------------------------TTTTATTTTCTTCTCTCTGATAAAATC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            512198 37 +    935526 AATTTTTAAT--------------------------------TTTCATTTTCTTCTCTCTGATGAAATA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500929 192 + 123392446 I
e proCoq1.NW_012150019v1      166176 35 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=204019.000000
s hg38.chr6_KI270758v1_alt     59359 64 +     76752 TCCT-------------GCTATCCTTTGCAAAGCTGGTTTTCAGGACACCCAGGGATTCTACT--CCTCTGAGTTTCTC
s gorGor5.CYUI01000036v1     2428802 64 +   2807050 TCCT-------------GCTATCCTCTGCAAAGCTGGTTTTCAGGACACCCAGGGATTCTACT--CCTCTGAGTTTCTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742823 64 - 122973662 TCCT-------------GCTATCCTCTGCAAAGCTGGTTTTCAGGACACCCAGGGATTCTACT--CCCCTGAGTTTCTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681754 62 - 171630274 TCCT-------------GCTATCTTCTGCAAAGCTGGTTTTCAGGACACTC--GGATTGTACT--CCTCTGAGTTTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237881 64 +   1154217 TCCT-------------GCTCTCTTCTGCAAAGCTGGTTTTCAGGACACCCAGGGATTGTACT--CCTCTGAGTTTCTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055344 62 +  15232693 TCCT-------------GCTATCTTCTACAAAGCTGGTTTTCAGGACACTC--GGATTGTACT--CCTCCAAGTTTCTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      304995 64 +    446445 TCCT-------------GCTATCTTCTGAAAAGCTGGTTTTCAGGACACCCAGGGATTGTACT--CCTCTGAGTTTCTC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      166211 63 +   1371726 TCCT-------------GCTATCTCTTGGGAGGCTGGTTTTCAGGACATCCAGGGA-TCTCCT--CCCCTGAGTTTCTC
i proCoq1.NW_012150019v1   I 35 I 131
s otoGar3.GL873550          15358130 62 -  18854210 TCCT-------------GTTGTCTCTTGCAAAACTGG-GTTCAGGGCACTCGGGGA-TCTCCT--CCTCAGAGTTCCTC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34365852 77 +  94987271 tcttttaaaaataaatatttGTCTCTTGCAAAGTTTGTCTTCAGGTAACCTAAGGACAACATT--TCTCTGAATTTCTt
i mm10.chr17               I 13 I 11
s canFam3.chr12             70406512 57 -  72498081 ATCT-------------GCTATCTCTTACAAAACTGATCATCAGGACACCTGGAGATCCTACTGACCTCC---------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            512235 48 +    935526 TTCT-------------ACTATCTCTTGCACAACTGGTTGTCAGGAG------------------ACACTGAGTTTCTC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500929 192 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=22942.000000
s hg38.chr6_KI270758v1_alt     59423 11 +     76752 TCTGACACCCT
s gorGor5.CYUI01000036v1     2428866 11 +   2807050 TCTGACACCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742887 11 - 122973662 TCTGACACCCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681816 11 - 171630274 CCTGACACCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237945 11 +   1154217 CCCGACACCCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055406 11 +  15232693 CCTGACACCCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305059 11 +    446445 CCTGACACCCT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15358192 11 -  18854210 CCTCATCGCCC
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34365940 11 +  94987271 tctgtctctct
i mm10.chr17               I 11 I 63
s canFam3.chr12             70406569  7 -  72498081 TTTGACT----
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            512283 11 +    935526 CCTCACATTCC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500929 192 + 123392446 I
e proCoq1.NW_012150019v1      166274 131 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=138947.000000
s hg38.chr6_KI270758v1_alt     59434 64 +     76752 CAACTAGCGCCCTGCAATTATTTTTATCATTGGATACACACTAAATTCTC-GTAAATGACCCTGT
s gorGor5.CYUI01000036v1     2428877 64 +   2807050 CAACTAGTGCCCTGCAATTATTTTTATCATTGGATACACACTAAATTCTC-GTAATTGACCCTGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742898 64 - 122973662 CAACTTGCGCCCTGCAATCATATTTATCATTGGATATACACTAAATTCTC-GTAATTGACCCTGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681827 64 - 171630274 GAACTAGAGCCCTGCAATTACATTCATCATTGGATACACACTAAATTCTC-ATAAATGACCCTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            237956 64 +   1154217 GAACTAGAGCCCTGCAATTATATTTATCATTGGATACACACTAAATTCTC-ATAATTGAACCTGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055417 64 +  15232693 GAACTAGAGCCCTGCAATTATATTTATCATTGGATACACACTAAATTCTC-GTAATTGACCCTGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305070 65 +    446445 GAACTAGAGCCCTGCAATTATATTTATCATTGGATACACACTAAATTCTCTGTAATTGACCCTGT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15358203 53 -  18854210 CAGCTA-CGACCTAAAGTCATACTT-TTTCTGTGTGTGCACTAAAT----------TGACTCTGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70406576 60 -  72498081 TGACTAAAGCCCTCAGGT----TTTATTGTTGCACATACACTAACTTCTA-AGAATTGACTCTAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            512294 57 +    935526 CAACTAGAGTCCAAAGAAC-------TTGTTGTGTATACACTAAATTCTA-AGAATCGACCCTAT
i dasNov3.JH569424         C 0 C 0
e mm10.chr17                34365951 63 +  94987271 I
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500929 192 + 123392446 I
e proCoq1.NW_012150019v1      166274 131 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=85726.000000
s hg38.chr6_KI270758v1_alt     59498 47 +     76752 CTTCACT--CTCTCTCTAAATTCTCTTCTTCTGATGTGAAAACAACTAA
s gorGor5.CYUI01000036v1     2428941 49 +   2807050 TTTCACTGTCTCCCTTTAAATTCTCTTCTTCTGATGTGAAAACAATTAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45742962 45 - 122973662 CTTCA----CTCTCTCTAAATTCCCTTCTTCTGATGTGGAAACAATTAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681891 42 - 171630274 CTTCACT--CTCCCTGTAAATTCTTTTCTTCTGATGTGAAAAC-----A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            238020 40 +   1154217 CTTCACT--CTCTC--TAAATTCTTTTCTTCTGATGTGAAAAC-----A
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055481 42 +  15232693 CTGCACT--CTCTCTGTAAATTCTTTTCTTCTGATGTGAAAAC-----A
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305135 42 +    446445 CTTCACT--CTCTCTCTAAATTCTTTTCTTCTGATGTGAAAAC-----A
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15358256 42 -  18854210 CTTTTCT--GCAGCTCCAAGCTCTCCTCTTCTGATGTGAAAAC-----T
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34366014 39 +  94987271 TTTTACT--CTATCTACAAACTCC---CCCTTGTTGTCAAAAC-----A
i mm10.chr17               I 63 I 5
s canFam3.chr12             70406636 42 -  72498081 CATCACT--GTAAGGATAAACTCTCTTCTTCTGATATGAAGCC-----A
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            512351 37 +    935526 TCTCACAA-ACTCCTGTGTATTCTCTTCTTCTGATGTA-----------
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4500929 192 + 123392446 I
e proCoq1.NW_012150019v1      166274 131 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=26280.000000
s hg38.chr6_KI270758v1_alt     59545 23 +     76752 ATTACAGAACT---TTGTGTTTTCCC
s gorGor5.CYUI01000036v1     2428990 23 +   2807050 ATTACAGAACT---TTGTGTTTTCCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743007 23 - 122973662 ATTACAGAACT---TTGTGTTTTCCC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681933 25 - 171630274 ATTACAACACTCTCTTGT-GTTTTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            238060 23 +   1154217 ATTACAACACT---TTGTGGTTTTCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055523 26 +  15232693 ATTACAACACTCTGTTGTGTTTTTCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305177 23 +    446445 ATTACAACACT---TTGTGTTTTTCC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4501121 22 + 123392446 aTTACAGAACT---TTGTTTTTCTC-
i micMur3.chr6             I 192 I 2
s otoGar3.GL873550          15358298 22 -  18854210 GTCACAGCACT---TTGCTTTCCCC-
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34366058 15 +  94987271 -----------GGCATGTCTTTTTCC
i mm10.chr17               I 5 C 0
s canFam3.chr12             70406678 20 -  72498081 ---ATATCACT---TTGGGTTTTTTT
i canFam3.chr12            C 0 I 2
s dasNov3.JH569424            512388  5 +    935526 -------------------TTCTT--
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      166274 131 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=394501.000000
s hg38.chr6_KI270758v1_alt     59568 85 +     76752 CCTCATGGGGGATTTTCTTCTGGATTAGAAACTGATTTTTATTAATACCATCTTCATGGTTGTGGCTTGAGTAATTTTATCCTTT
s gorGor5.CYUI01000036v1     2429013 85 +   2807050 CCTCATGGGGGATTTTCTTCTGGATTAGAAACTGATTTTTATTAATACCATCTTCATGGTTGCGGCTTGAGTAATTTTATCCTTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743030 85 - 122973662 CCTCATGGGGGATTTTCTTCTGGATTAGAAACTGATTTTTATTAATACTATCTTCATGGTTGCGGCTTGAGTAATTTTATCTTTT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138681958 85 - 171630274 CCTCACGGTAGATTTTCTTCTGAATTAGAAACTGATTTTCATTAGCACCATCTTCATGGCTGTGGCTGGAGTAACTTTATCCTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            238083 85 +   1154217 CCTCACGGGAGATTTTCTTCTGAGTTAGAAACTGATTTTCATTAGCACCATCTTCATAGTTACGGCTTCAGTAATTTTATCCTTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055549 85 +  15232693 TCTCATGGGAAATTTTCTTCTGAATTAGAAACTGATTTTCATAAGCACCATCTTCATGGTTGTGGCTTGAGTGATTTTATCCTTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305200 85 +    446445 CCTCACGGGAGATTTTCTTCTGAATTAGAAACTGGTTTTCATTAGCACCATCTTCATGGTTGTGGCTTCAGTAATTTTATCCTTC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4501145 85 + 123392446 CCTCATGGTGGATTTTCTTCTGGATTAGAAACTAATTTTCCCTAATGCCATCTTCCTGGCTGTGGCCTGGGGCATTTTATCCTTT
i micMur3.chr6             I 2 I 199
s proCoq1.NW_012150019v1      166405 85 +   1371726 CCTCACGGTGGATTTTCTTCTGGATTAGAAACTAATTTTCCCTAATACCATCTTCATGGTTGTGGCCTGGGGAATTTTATCCTTT
i proCoq1.NW_012150019v1   I 131 I 119
s otoGar3.GL873550          15358320 85 -  18854210 CTTGACAGTGGATTTTCTTCTGGATTAGAACCTAATTTTCCTCAACACCATCTTTATGGCTGTGGCCTGGAGAATTTTTTCTTTT
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34366073 81 +  94987271 CTCTGATGTAAATTTTATTCTGCACTAGAAATTAATTTTCCTCAAAGC---CCTGGCAGTTAT-GTTTGGCAGACTTTATGTTTA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70406700 85 -  72498081 CTTTATTGTGAATTGTCTTCAGGATTAGAAACTTGTTTTTCTTAATACCATCTTCATGCTTGTGGATTAAATAATTTTATCCTTT
i canFam3.chr12            I 2 I 1
s dasNov3.JH569424            512393 85 +    935526 CCTCATGGTAGATTTTCTTCTGGACTAGAAGTTAAGTTTCCTTAGCACTGTCTTCATGATTTGGGCCTGGGTAATTTTACCCTTT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=152296.000000
s hg38.chr6_KI270758v1_alt     59653 67 +     76752 CCTCCTCAAGTCATTCCAGTAATT-------GT-GTGACATAGTTGG--AA-GAGAGAAGGGAAAACAACTTGTCTGT
s gorGor5.CYUI01000036v1     2429098 67 +   2807050 CCTCCTCAAGTCATTCCAGTGATT-------GT-GTGATATAGTTGG--AA-GGGAGAAGGGAAAACAACTTGTTTGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743115 67 - 122973662 CCTCCTCAAGTCATTCCAGTGATT-------GT-GTCATACAGTTGG--AA-GAGAGAAGGGAAAACAACTTGTCTGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682043 66 - 171630274 TCCCTCCAAGTCATTCCAGTGATT-------GT-GTGATGCAGCTGG--AA-GAGAGAA-GGAAAACAACTTGTCTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            238168 66 +   1154217 TCCCCCCAAGTCATTCCAGTGATT-------GT-GTGATGTAGCTGG--AA-GAGAGAA-GGAAGACAACTTGTCTGT
i saiBol1.JH378315         C 0 I 319
s cebCap1.NW_016107339v1    14055634 66 +  15232693 TGCCCCCAAGTCATTCCAGTGATT-------GT-GTGATGTAGCTGG--AA-TAGGGAA-GGAAAACAGCTTGTCTGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305285 66 +    446445 TGCCCCCAAGTCATTCCAGTGATT-------GT-GTGATGTAGCTGG--AA-GAGAGAA-GGAAAACAACTTGTCTGT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15358405 67 -  18854210 GCCACTTCACTTATTCCAGTGATT-------CT-ATGATATAATTCG--AA-GAAAGAAGGGGGGAAAgtgtgtgtgt
i otoGar3.GL873550         C 0 I 14
s mm10.chr17                34366154 68 +  94987271 -CCACCGTAGTTACTCCAGTAATCTGTGGTGGA-GTGATATAATGGG--AAGGAGAGAA-GGAAATGGGGTGG-----
i mm10.chr17               C 0 C 0
s canFam3.chr12             70406786 68 -  72498081 GCTATTCTTGTCATTCCAGTGATG-------GTGGTGATATAATTGG--AA-AAGAGAAGGGAAAGAAATGTGTGTGT
i canFam3.chr12            I 1 I 6
s dasNov3.JH569424            512478 55 +    935526 --------TCCCATTCCAGTGATT-------ATAATGGTATAATTGGCTAA-GACGGAA--AAAAACAACTGT-----
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4501230 199 + 123392446 I
e proCoq1.NW_012150019v1      166490 119 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=109990.000000
s hg38.chr6_KI270758v1_alt     59720 61 +     76752 GCATGTGTACATTTCTGAGACAAGCAAACACAAAAT-------------ACTTGCATTCTCTCCTCTGCATCTC
s gorGor5.CYUI01000036v1     2429165 61 +   2807050 GCATGTGTACATTTCTGAGATGAGCAAACACGAAAT-------------ACTTGCATTCTCTCCTCTGCATCTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743182 61 - 122973662 GCATGTGTACATTTCTGAGACGAGCAAATACGAAAT-------------ACTTGCATTCTCTCCTCTGCATCTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682109 61 - 171630274 GCATGTGTACATTTCTGAGACGAGCAAATACAAAAT-------------GCTTGCAGTCTCTCCTCTGCATCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            238553 60 +   1154217 GCATGTGTGCATTTCTGAGACGAGCAAATAC-AAAT-------------ATTTCCAGTCTCTCCTCTGCATCTC
i saiBol1.JH378315         I 319 C 0
s cebCap1.NW_016107339v1    14055700 61 +  15232693 GCATGTGTACATTTCTGAGACGAGCAAATACAAAAT-------------ACTTGCAGTCTCTCCTCTGCATCTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305351 61 +    446445 GCATGTGTACATTTCTGAGATGAGCAAATACAAAAT-------------ACTTGCAGTCTCTCCTCTGCATCTC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15358486 74 -  18854210 gCTCATGTGCCCTTCTGAGAGGAGCAAACATTGAAGTGAGACATCATAAATTTACGGTCTCTCCTCTGCTTCTG
i otoGar3.GL873550         I 14 C 0
s mm10.chr17                34366222 42 +  94987271 ----------------GGCACCAGCAGACATAA----------------GCTTACCTGCTTCCCTTGGCACCTG
i mm10.chr17               C 0 C 0
s canFam3.chr12             70406860 70 -  72498081 ATGTGTGTGTATTTCTTACAGGAGCAAAGGGTAAAG----CTAGCATAAACCTTGTGTCTTTCCTCAGCTTTTG
i canFam3.chr12            I 6 C 0
s dasNov3.JH569424            512533  6 +    935526 --GTGTGT------------------------------------------------------------------
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4501230 199 + 123392446 I
e proCoq1.NW_012150019v1      166490 119 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=137789.000000
s hg38.chr6_KI270758v1_alt     59781 48 +     76752 CAGAGCAGGGAGGAGCAGGCCAACTGCCT-CCTGGGAGACCAAATTCTC
s gorGor5.CYUI01000036v1     2429226 48 +   2807050 CAGAGCAGGGAGGAGCAGGCCAACTGCCT-CCTGGGAGACCAAATTCTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743243 48 - 122973662 CAGAGCAGGGAGGAGCAGGCCAACTGCCT-CCCGGGAGGCCCAATTCTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682170 48 - 171630274 CAGAGCAGGGAGGAACAGGCCAACTGCCT-CCTGAGATGCCCAGTTCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            238613 48 +   1154217 CAGAGCAGGGAGGAACAGGCCAACTGCCT-CCTGAGATGCCCAGTTCTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055761 48 +  15232693 CAGAGCAGGGAGGAACAGGCCAACTGCCT-CCTGAGATGCCCAGTTCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305412 47 +    446445 CAGATCAGGGAGGAACA-GCCAACTGCCT-CCTGAGATGCCCAATTCTC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      166609 48 +   1371726 CAGAGCAGGGAGCAGCGGA-CAACTGCCTCCCTGAGAGGCCCAGTTCCC
i proCoq1.NW_012150019v1   I 119 C 0
s otoGar3.GL873550          15358560 47 -  18854210 GAGAGCAGGGAGAAGCAGACCAGCTCCCTCCCTGAGAGGCCCAGTTC--
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34366264 39 +  94987271 -ACTTTCAGGAAGACTGAGCCAACGGGTT-CCTGGAGAGAC--------
i mm10.chr17               C 0 C 0
s canFam3.chr12             70406930 49 -  72498081 CAGAGTAGGGAGGGACAGATCAGCTTCCTTCTTGAGAGATCCACTTCTC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            512539 38 +    935526 --GGGCGGATGGGAGTTGACC---------CTTGAGAGACCCAATTGTT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4501230 199 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=648331.000000
s hg38.chr6_KI270758v1_alt     59829 155 +     76752 TCCCTTCTCTCCAGCCTAGAAGCTGCTCAG--ATGAAAAGCACAATCTTA--ATATTGTCCCAGTTTCACAGTTTCACAGGAT--TCTTGGGTTTCTGTTTTAGAGTCCAGGATGACGTTTTTGT------GGAAGACACTGCTTGTTTGGGGATTGCTTCTTGCTG
s gorGor5.CYUI01000036v1     2429274 155 +   2807050 TCCCTTCTCTCCAGCCTAGAAGCTGCTCAG--ATGAAAAGCACAATCTTA--ATATTGTCCCAGTTTCACAGTTTCACAGGAT--TCTTGGGTTTCTGTTTTAGAGTCCAGGATGACGTTTTTGT------GGAAGACACTGCTTGTTTGGGGATTGCTTCTTGCTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743291 155 - 122973662 TCCCTTCTCTCCAGCCTAGAAGCTGCTCAG--ATGAAAAGCACAATCTTA--ATATTGTCCCAGTTTCACAGTTTCACGGGAT--TCTTGGGTTTCCATTTTAGAGTCCAGGATGACGTTTTTGG------GGAAGACACTGCTTGTTTGGGGATTGCTTCTTGCTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682218 153 - 171630274 TCCCTTCTCTCCAGCATAGAAGCTGCTCGG--ATGAAAAGCACAATTTTG--ATATTGTCTCAGTTT--CCGTTTCATGGGAT--TCTTGGGTTTCCATTTTAGAGTCCAGGATGACTTTTTTAT------GGAAGACAGTGCTTATTTTGGGATTGCTTCTTACTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            238661 153 +   1154217 TCCCTTCTCTCCAGCCTAGAAGCTGCTCAG--ATGAAAAGCACAATTTTG--ATTTTGTTTCTGTTT--CAGTTTCATGGGAT--TCTTGGGTTTCCATTTTAGAGTCCAGGATGACTTTTTTAT------GGAAGACACTGCTTATTTTGGGATTGCTTCTTGCTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055809 153 +  15232693 TCCCTTCTCTCCAGCCTAGAAGCTGCCCAG--ATGAAAAGCACAATTTTG--ATATTGTTTCAGTTT--CAGTTTCATGGGAT--TCTTGGGTTTCCATTTTAGAGTCCAGGATGACTTTCTTAT------GGAAGACACTGTTTATTTTGGGATTGCTTCTTGCTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305459 153 +    446445 TCCCTTCTCTCCAGCCTAGAAGCTGCTCAG--ATGAAAAGCACAATTTTG--ATATTGTTTCAGTTT--CAGTTTCATGGGAT--TCTTGGGTTTCCATTTTAGAGTCCAGGATGACTGTTTTTT------GGAAGACACTGCTGATTTTGGGATTGCTTCTTGCTG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4501429 165 + 123392446 TCCCTCCTCCCCAGCCCAGGAGCTGCTCAGATATGAAAAGGACGATCTTG--ATATTGTCCCAGTTTCATGATTTAATGGGATTCTTCTGGGTTTCCATTTTAGAGCCCCAGATGACTTTTTTGTGCTCCCGCAAAATACTGCCGATTTGGGGATTGCTTCTTGCTG
i micMur3.chr6             I 199 C 0
s proCoq1.NW_012150019v1      166657 156 +   1371726 TCCCTCCTCCCCAGCCCAGGAGTTGCTCAG--ATGAAAAGGATGATCTTGATATATTGTCCCAGTTTCACGATTTAATGGGA---TTCTGGGTTTCCATTTTAGAGCCTCAGATGACTTTTTTGT------GGGAGATACTGCTTATTTGGGGATTGCTTCTTGCTG
i proCoq1.NW_012150019v1   C 0 I 452
s otoGar3.GL873550          15358607 154 -  18854210 TCCCTCCTCCCCAGCCCAGGAGCTGCTCCA--ATGAAATGGACATTTGTG--ATATTGT-CAGGTTTCATGATATAATGGGAT--TCCGGGGTTTCCGTTTTAGAGTCCAAGATGACTTTTTTAT------GGAAGATTCTGCTCATTTTGGGATTGCTTCTTGCTG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34366303 137 +  94987271 ----------CCAGCCCTCAGGCTGCTCCT--GTGAGAAAAGCCATCTCG--ATGTTTTGC--------TCATCTCATGACCT--CCTGGGGTTTGCATTTCAGACTCCAAGATAGCTTTGCTAT------GGATGACCCTGCCTGTTGTGGTGCTGCCTCTGGCCA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70406979 155 -  72498081 ACCCTCCTCTCTAACTGAGGAGCTGCTTAG--ATAAAAAGAACGATCTTG--GAATTTTTCCAGTTTCATGACTTAATGGGAT--TCTGGGTTTTCCATTTTAGAGCCCATGATGAATTTTTCAT------GGAAGATAGTGCTTATTTTGGTATTACTTCTTGCTG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            512577 113 +    935526 --------------------------------------------ACCCTT--AATTATTCTCACTTTCATGATTTAATGGGAT--TCTGGGGTTTCTACTTCAGAAAGCAGGATGCCTTCTTCAT------GGAAGATGCTGCTTATTTTTGGATCGCTTTTTGCTG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=97284.000000
s hg38.chr6_KI270758v1_alt     59984 25 +     76752 TGGCTGTAGGCCTGCTCAGGAAGAG
s gorGor5.CYUI01000036v1     2429429 25 +   2807050 TGGCTGTAGGCCTGCTCAGGAAGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743446 25 - 122973662 TGGCTGTAGGCCTGCTCAGGAAGAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682371 25 - 171630274 TGGCCGTAGGCCTGCTCAGGAGGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            238814 25 +   1154217 TGGCTGTGGGCCTGCTCAGGAGGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055962 25 +  15232693 TGGCTGTAGGCCTGCTCAGGAGGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305612 25 +    446445 TGGCCATAGGCCTGCTCAGGAGGAG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4501594 25 + 123392446 CGGCTGTAGGCCTGATCAGGAGGAG
i micMur3.chr6             C 0 I 524
s otoGar3.GL873550          15358761 25 -  18854210 CACTTGTAGGCCTGGTCTGGAGAAA
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34366440 25 +  94987271 TGGCTATCGACCTGATCAAGGTGAA
i mm10.chr17               C 0 C 0
s canFam3.chr12             70407134 25 -  72498081 CACTTGTGGGCCTGGTCAAGAGAAA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            512690 25 +    935526 GTGCTGTAGTCCTGAGTGGGAGGAA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      166813 452 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=30925.000000
s hg38.chr6_KI270758v1_alt     60009 13 +     76752 AAGG--TGAAAGAGG
s gorGor5.CYUI01000036v1     2429454 13 +   2807050 GAGG--TGAAAGAGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743471 13 - 122973662 GAGC--TGAAAGAGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682396 13 - 171630274 GAGC--TGAAAGAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            238839 13 +   1154217 GAGC--TGAAAGAGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14055987 13 +  15232693 GGGC--TGAAAGAGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305637 13 +    446445 GAGC--TGAAAGAGG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15358786 15 -  18854210 GAGCTATAAAAATGG
i otoGar3.GL873550         C 0 C 0
s mm10.chr17                34366465 13 +  94987271 ACGG--TGGCGGCGG
i mm10.chr17               C 0 N 0
s canFam3.chr12             70407159 15 -  72498081 AAGCTGTGAAAAAGG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            512715 15 +    935526 GAGATATAAAAAAGG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4501619 524 + 123392446 I
e proCoq1.NW_012150019v1      166813 452 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=1039640.000000
s hg38.chr6_KI270758v1_alt     60022 433 +     76752 TAAGTCAGGGAAACAG-AAACA--GCG-GAGCACA--CTGCAGTGGGAACTGTACTGCGTACTTCCCTGAGCCTCCCTTTTCACAAGTCACCTATGGGAGGCAGTCAGTGAATATCCAGTAACTAAGGAAATGTAAGAAACAGGAAAGCCCAGGGCTTA---TCTTGCAATCCAGGCTCAGCGATGCATGAGGTCAGTGTTTCCACTTGTAATAGAAGCAAAGTGATTAAAAGATAATGATTTGATTTCCTGCTGCCCATTCTCCAGTGATCTGGTTAAGGAAGAAGA---AAAAAGTTAGTGGTACAGCCATCCTTGTTTTCGAGGCTGAGAGCTGAG-ATTC-ACTGAGATT--------TGTTGGCATGAACAAT--------------------------------------TTCCTATGATCTTTAAAAATGTGGTGACCTAC-TTGTTGGTGATTTCTGTGTTGCTGGTG------ACTTCTCATGTGTTAGGG---
s gorGor5.CYUI01000036v1     2429467 433 +   2807050 TAAGTCAGGGAAACAG-AAACA--GCG-GAGCACA--CTGCAGTGGGAACCGTACTGCGTACTTCCCTGAGCCTCCCTTTTCACAAGTCACCTATGGGAGGCAGTCAGTGAATATCCAGTAACTAAGGAAATGTAAGAAACAGGAAAGCCCAGGGCTTA---TCTTGCAATCCAGGCTCAGCGATGCATGAGGTCAGTGTTTCCACTTGTAATAGAAGCAAAGTGATTAAAAGATAATGATTTGATTTCCTGCTGCCCATTCCCCAGTGATCTGGTTAACGAAGAAGA---AAAAAGTTAGTGGTACAGCCATCCTTGTTTTCGAGGCTGAGAGCTGAG-ATTC-ACTGAGATT--------TGTTGGCATGAACAAT--------------------------------------TTCCTATGATCTTTAAAAATGTGGTGACCTAC-TTGTTGGTGATTTCTGTGTTGCTGGTG------ACTTCTCATGTGTTAGGG---
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743484 430 - 122973662 TAAGTCAGGGAAACAG-AAACA--GCG-GAGCACA--CTGCAGTGGGAATCGTACTGCGTACTTCCCCGAGCCTCCCTTTCCACAAGTCATCTATGGGAGGCAGTCAGTGAATATCCAGTAACTAAGGAAATGTGAGAAACAGGAAAGCCCAGGGCTTA---TCATGCAATCCAGGCTCAGTGATGCATGAGGTCAGTGTTTCCACTTGTAATAGAAGCAAAATGATTAAAAGATAATGATTTGATTTCCTGCTGCCCATTCCCCAGTGATCTAGTTAAGGAAGAAGA---AAAAAGTGAGTGGCACAGCCATCCTTGTTTTCAAGGCTGAGAGCTGAG-GTTC-ACTGAGATT--------TGTTGGCATAAACAAT--------------------------------------TTCCTATGATCTTTAAAAATGTGGTGACCTAC-TTGTTGGTGATTTCTG---TGCTGGTG------ACTTCTCATGTGTTAGGG---
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682409 433 - 171630274 TAAGTCACAGAAACAG-AAACA--GCG-GAGCACA---TGCAGTGGGAACCATACCGCGCACTTCCCCAAGCCTCCCTTTTCAGAAGTCACCCATGG--GACGTTCAGTGACTATCCAGTAACTAAGGAAATGTGAGAAACAGGAAAGCACAGGGCTTA---TTATGCACTACAGGCTCAGTAATGAATGAGATTAGAGTTTCCACTTGTAACAGAAGCAAAAAGGTTAAAAGATAATGATTGTATTCCCTGCTGCCCATTTCCCAGTGATCTAGCTAAGGAGGAAGATGGAAAAAGTTAGTAGTATAGCCATCCTTGTTTTTGAAGCTGAGAGCTGGG-GTTC-ACTGAGACT--------TGTCAGCATGAACGTT--------------------------------------GTCTTGTGATCTTTAAAAACGTGGTGACCTCC-TTGTTGGTGATTTCTGTTTTGCTGGTG------ACTTCTCATCTGTTAGGG---
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            238852 435 +   1154217 TAAGTCACGGAAACAG-AAACA--GCA-GAGCACA---TGCAGTGGGAACCGTACTGCGCACTTCCCCGGGCCTCCCTTTTCAGAAGTCACCCATGGGAGACGTTCAGTGACTATTCAGTAACTAAGGAAATGTGAGAAACAGGAAAGCACAGGGCTTA---TTATGCATTACAGGCTAAGTGATGAATGAGGTCAGAGTTTCCACTTGTAACAGAAGCAAAAGGATTAAAAGATAATGATTTGATCCCCTGCTGCCCATTTCCCAGTGATCCAGCTAAGGAGGAAGATGGAAAAAGTTAGTGGTATAGCCATCCTTGTTTTTGAGGCTGAGAGCTGGT-GTTC-ACTGAGACT--------TGTTGGCATGAACATT--------------------------------------GTCCTATGATCTTTAAAAATGTGGTGACCTCC-TTGTTGGTGATTTCTGTTTTGCTAGTG------ATTTCTCATCTGTTAGGG---
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14056000 435 +  15232693 TAAGTCAAGGAAACAG-AAACA--GCG-GAGCACA---TGCAGTGGGAACCATACTGTGTACTTCCCCAAGCCTCCCTTTTCAGAAGTCACCCATGGGAGACGTTCAGTGACTATCCAGTAACTAAGGAAATGTGAGAAACAGGAAAGCACAGGGCTTA---CTATGCATTACAGGCTCAGTGATGAATGAGGTCAGAGTTTCCACTTGTAACAGAAGCAAAAGGATTAAAAGATAATTATTTGATTCCCTGCTGCCCATTTCCCAGTGATCTAGCTAAGGAGGAAGATGGAAAAAGTTAGTAGTATAGCCATCCTCGTTTTTGAGGCTGAGAGCTGGT-GTTC-ACTGAGACT--------TGTTGGCACGAACATT--------------------------------------GTCCTGTGATCTTTAAAAATGAGGTGACCTCC-TTGTTGGTGATTTCTGTTTTGCTGGTG------ATTTCTCATCTGTTAGGG---
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      305650 435 +    446445 TAAGTCATGGAAACAG-AAACA--GTG-GAGCACA---TGCAGTGGGAACCGTACTGCACACTTCCCCGGGCCTCCCTTTTCAGAAGTCACCCATGGGAGATGTTCAAGGAATACCTAGTAACTAAGGAAATGCGAGAAACAGGAAAGCATAGGGCTTA---ATATGCATTACAGGCTTAGTGATGAATGAGGTCAGAGTTTCCACTTGTAACAGAAGCAAAAGGATTAAAAGATAATGATTTTATTCCCTGCTGCCCATTTCCCAGAGATCTAGTTAAGGAGGAAGATGGGAAAAGTTAGCAGTATAGCCATCCTTGTTTTTGAGGTTGAGAGTTGGG-GTTC-ACTGAGACT--------TGTTGGCATGAACATT--------------------------------------GTCCTGTGATCTTTAAAAATGTGGTGAACCAC-TTGTTGGTGATTTCTGTTTTGCTGGTG------ATTTCTCATCTGTTAGGG---
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15358801 435 -  18854210 TAAGTTAGGCAAACAG-AAACT--CTGAGAGCATACCCTGTGGTGGGAACTGCACTGC-CACTTTCCTGAGCCTCCCTTTTCAGCAGTCACCCAGGGGGGGCTTTCAGTGAGTATTCAGTCATTCGTGAAGGGTGAGAAACATGAGAGCCC-TGGCTTATATTCATGCAATCAAGGCTCAG-------TGAGATCACAGTTTACAGTGGTAATAG-AGCAAAAAG----AAAGACAATAATTTGATTCCTTACTGCCCATCTCCGAGTGATCTAGTCAAGGGAGAGGAAGAAAAAAGCCAG-GGCCCAGCTGTCCTTGATTTTATAGCTGAGAGATGAGAATTC-ACTTAGATT-------CTTTTGGCATGAACATT--------------------------------------TCACTAAGATCTTTAAAAATGTAGTTATCTAG-TAACTGGTGATTCCTGCTCAGCAAGTGGAGGTCACTTCCCACGTGCTGATA---
i otoGar3.GL873550         C 0 I 3
s canFam3.chr12             70407174 424 -  72498081 TAAGTTAGGTAAATAGTCAAGT--ATG-GAGTACCTTTTGTAGGAGCAGCCTTGCTGTGCACTTTCCCTAACTTCTCTTTTCAGCAGTCACATAGGAGAGGAATTCAGTGAACATTCAACAATTAAT---------GAAACATGAGAGTCCATGGCTTA----CGTTCAA-GGAGGATCAGTGCTGAATGATATCAGAATTTACAGTGATAATAGAAGCAAAAGGATTAAAAGACAATAATTTGATCCCTCAGTTAACATTTCCAAGTTACCTAGTTAAGGGAGAAGA---AAAAAAT----AGCATAGCCATCCATTCTTTAAAGGCTGAGAGTTGAG-ACTCGACTGAGATT-------CTGTTGGTATCAATATT--------------------------------------TCACTAAGATCTTTAAAAATATGGTAACTTGC-TTATTGAGGATTCTTGCTCTGTGGATGAAGA--ACTTCT-ATGTGTGAT-----
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            512730 481 +    935526 TAAGATAGGTAAACAG-AAAGAGGGTG-GAGCATAACGAGCTGTGGGAATT-TACTGCATACTCTCTCTCGCCTCTCTTTT--GAATGTACATAGGGGAGGCA-TAAGTCAATAGTCAGTAATTCA-------TGATGCATATGAGAATTCTGGGCTTCCACCCATATAGTCAGGGATC-GTGTTGAATGAGATCAGAGATTATAGTGATAATAGAATCAAAAGTTTCAAAATACAATAATTT-ATTTCCTAGTGCCCATTCCCAAGAGATCTAGTTAAGGAAGATGA--GGAAGTGTTAGTGG-ATAGCCACCCTTGTTTGCAAAGCTGAGAGCTGAG-ATTT-AACTATAATATTTATTCTGTTGGCATGATCATTTAAAGGATAAAATGATTAAATATAAGGTGATTAAATGATCACTAAGATCATTAAAAATGTGAGGGACTACTTTATTGGTGGTTTCTGCTCTGCAGGTAAAGG--ATTTCTCAAGTACCAATTGAG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4501619 524 + 123392446 I
e proCoq1.NW_012150019v1      166813 452 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=192626.000000
s hg38.chr6_KI270758v1_alt     60455 58 +     76752 AGGCTGTTTTGTGTGCTCTAGAAAGTGCTTCCACTTTAAATTTCTTACGTCTGTGAAA-
s gorGor5.CYUI01000036v1     2429900 58 +   2807050 AGGCTGTTTTGTGTGCTCTAGAAAGTGCTTCCACTTTAAATTTCTTATGTCCGTGAAA-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743914 58 - 122973662 AGGCTGTTTTGTGTGCTCTAGAAAGTGCTTCCACTTTAAATTTCTTATGTCCATGAAA-
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682842 58 - 171630274 AGGCTGTTTTGGGTGCCCTAGAAAGGGCTTCCACTTTTAATATCTTATGTCCATAAAA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            239287 58 +   1154217 AGGCTGCTTTGGGTGCTCTAGAAAGGGCTTCCACTTTTAATATCTGATGTCCGTGAAA-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14056435 57 +  15232693 AGGCT-TTTTGGGTGCTCTAGAAAGGGCTTCCACTTTTAATATCTTATGTCCGTGAAA-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      306085 58 +    446445 AGGCTGTTTTGGGTGCTCTAGAAAGGGCTTCCACTTCTAATATCTTATGTCCGTAAAA-
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      167265 58 +   1371726 AGGCTGTTTTGTGCGCTCTGTAAAGTTCTCCCACTTTAAATTTCGTATGTCAGTGAAA-
i proCoq1.NW_012150019v1   I 452 I 52
s otoGar3.GL873550          15359239 58 -  18854210 AGACTGTTTTGTATACTCTGTAAAGTTCTTTCTCTTTAAATTTCTTATGTGAGTGAAA-
i otoGar3.GL873550         I 3 C 0
s canFam3.chr12             70407598 58 -  72498081 AGGTTGTTTTGTGTGCCCTATAAAGTTCCTTCACTTCAAATTTCTTATGTCACTGTAA-
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            513211 54 +    935526 AGGCTATTTTGTGTG-TCTAGAAAG----TTCACTTTAAATTTCTTATGTCAACTGAGC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4501619 524 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=99274.000000
s hg38.chr6_KI270758v1_alt     60513 38 +     76752 CACTTGTCTT-CCTGTTTGGCTATTAATAGAATGAAATT
s gorGor5.CYUI01000036v1     2429958 38 +   2807050 CATTTGTCTT-CCTGTTTGGCTGTTAATAGAATGAAATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45743972 38 - 122973662 CACTTGTCTT-CCCATTTGGCTGTTAATAGAATGAAATT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682900 38 - 171630274 CACTTGTCTT-CCTGTTTGGCTGTTAATAGCATGAAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            239345 38 +   1154217 CACTTGTGTT-CCTGTTTGGCTGTTAATAGCATGAAGTT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14056492 38 +  15232693 CACTTGTCTT-CCTGTTTGGCTGTGAATAGCATTAAGTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      306143 38 +    446445 CACTTGTCTT-CCTGTTTGGCTGTTAATAGCATGAAATT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15359297 39 -  18854210 AGTTTAGCTTGCCTGTTTGGATATTAATAGCATGAATTA
i otoGar3.GL873550         C 0 I 10
s canFam3.chr12             70407656 38 -  72498081 CTTTGGTTTG-CTTGTTTGGATGTTGGTATCATGGAATA
i canFam3.chr12            C 0 I 17
s dasNov3.JH569424            513265 38 +    935526 CTGTTGTTTG-CCAGTTTGGATATCAATATCATGAAATT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4501619 524 + 123392446 I
e proCoq1.NW_012150019v1      167323 52 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=2500.000000
s hg38.chr6_KI270758v1_alt     60551  4 +     76752 -ATAT----------------------------------------
s gorGor5.CYUI01000036v1     2429996  4 +   2807050 -ATAT----------------------------------------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744010  4 - 122973662 -ATAT----------------------------------------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682938  4 - 171630274 -ATAT----------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            239383  4 +   1154217 -ATAT----------------------------------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14056530  4 +  15232693 -ATAT----------------------------------------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      306181  4 +    446445 -ATAT----------------------------------------
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4502143  4 + 123392446 -ATAT----------------------------------------
i micMur3.chr6             I 524 C 0
s otoGar3.GL873550          15359346  4 -  18854210 -ATAT----------------------------------------
i otoGar3.GL873550         I 10 C 0
s canFam3.chr12             70407711  4 -  72498081 -ACAT----------------------------------------
i canFam3.chr12            I 17 C 0
s dasNov3.JH569424            513303 45 +    935526 AATATTTTTGCAATACTCCTCCCCACCCACCCCCCAAAAAACTAC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      167323 52 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=228706.000000
s hg38.chr6_KI270758v1_alt     60555 47 +     76752 TGATTAATTATCAGAATGGA-TTCTCTTTCTTTACAGTGAATGTGACA
s gorGor5.CYUI01000036v1     2430000 47 +   2807050 TGATTAATTATCAGAATGGA-TTCTCTTTCTTTACAGTGAATGTGACA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744014 47 - 122973662 TGATTAATTATCAGAATGGA-TTCTCTTTCTTTACAGTGAATGTGACA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682942 47 - 171630274 TGATTAATTATCAGAATGGT-TTCTCTTTCTTTACAGTGACTGTGACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            239387 47 +   1154217 TGATTAATTATCAGAATGGA-TTCTCTTTCTTTGCAGTGAATGTGACA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14056534 47 +  15232693 TGATTAATTATCAGAATGGA-TTCTCTTTCTTTACAGTGAATGTGATA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      306185 43 +    446445 TG----ATTATCAGAATGGA-TTCTCTTTCTTTACAGTGAATGTGACA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4502147 47 + 123392446 TGATTAATTGTCAGAATGGA-TTTTCTTTCTTCGCAGTGAATGTGACA
i micMur3.chr6             C 0 I 734
s proCoq1.NW_012150019v1      167375 47 +   1371726 TGATTAATTATCAGAATGGA-TTTTCTTTCTTTGCAGTGAATGTGACC
i proCoq1.NW_012150019v1   I 52 C 0
s otoGar3.GL873550          15359350 46 -  18854210 TGACTAATTATCAGAATGGA--TTTCTTTCTTTGCAGTGAATATGACA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70407715 46 -  72498081 TGGTT-ATTATCAGAATGGA-TTTTCTTTCTCTACAGCAAATATGACA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            513348 48 +    935526 TACCTAATTATTGGAATGGATTTTTCTTTCTCTACAGTGAATGTGACA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902  7 - 173848474 I
e panTro5.chr6             142758252  7 - 175400573 I

a score=339938.000000
s hg38.chr6_KI270758v1_alt     60602  98 +     76752 TTGGCTTCAAACACAGCTCACCTGAAACTGATTTCTTCTGAACAAAACAAGCGTGTGATCCATGGACATTC-AGGCCG------CCAGATATCCCACAGAGATCT
s gorGor5.CYUI01000036v1     2430047  98 +   2807050 TTGGCTTCAAACACAGCTCACCTGAGACTGATTTCTTCTGAACAAAACAAGAGTGTGATCCATGGACATTC-AGGCAG------CCAGATATCCCACAGAGATCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744061  98 - 122973662 TTCGCTTGAAACACAGCTCACCTGAAACTGATTTCTTCTGAACAAAACAAGAGTGTGATCCATGGACATTC-AGGCAG------CCAGATATCCCACAGAGATCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138682989  98 - 171630274 CTGGCTTCAAATACAGCTCATCTGAAACTGATTTCTTCTGAACAAAACAAAAGTGTGATCCATGGACTTTC-GGGCAG------CCAGACGTCCCACAGAGATCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            239434  98 +   1154217 CTGGCTTCAAATACAGCTCATCTGAAACTGATTTCTCCTGAACAAAACAAGAGTGTGATCCATGGACATTC-GGGCAG------CCAGACATCCCACAGAGATCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14056581  98 +  15232693 CTGGCTTCAAATACAGCTCATCTGAAACTGATTTCTTCTGAACAAAACGAGAGTGTGATCCATGGACATTC-GGGCAG------CCAGACGTCCCACAGAGATCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      306228  98 +    446445 CTGGCTTCAAATACAGCTCATCTGAAACTGATTTCTTCTGAACAAAACAAGAGTGTGATCCATGGCCATTC-GGGCAG------CCAGATGTCCCACAGAGATCT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      167422  98 +   1371726 CAGGATCCAAATACAGCTCACGGGAAACTGATTCTTCCTGAGGGAAGCAAGGGTGTGTCCCCCGGACATTC-CGGCGG------CCAGACATCCCCCAGAGATGT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15359396  98 -  18854210 CAGGATCCCAATGCAGCTCACCTGAAACTGATTCTTTCCAAGGAAAGCAAGGATGTGACCCCTGGACATTC-AGGCAG------CTGGACACCCCCTAGAGACTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70407761  98 -  72498081 TTGTATCTAAATACCACTCACTCAGGACTGATCTTTTCTGAGGGATACAAGCATGTGACCCATGAACATTC-ATGTAG------CCATACATCCTACAGAGATTT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            513396 105 +    935526 CTGGATCCAAATACAGCTCACCCACAGCTCATCCTTTCTGAGAGAAACAAATGTATGATCCGTGGAGATTCTTGGCAGAATCTTCCAGAAGTACCACAGAGATTT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4502194 734 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140905902   7 - 173848474 I
e panTro5.chr6             142758252   7 - 175400573 I

a score=47984.000000
s hg38.chr6_KI270758v1_alt     60700 13 +     76752 GACTATCTGCTCT
s panTro5.chr6             142758259 13 - 175400573 GACTATCTGCTCT
i panTro5.chr6             I 7 C 0
s panPan2.chr6             140905909 13 - 173848474 GACTATCTGCTCT
i panPan2.chr6             I 7 C 0
s gorGor5.CYUI01000036v1     2430145 12 +   2807050 -GATATCTGCTCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744159 12 - 122973662 -GATATCTGCTCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138683087 13 - 171630274 GATTGTCTGCTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            239532 13 +   1154217 GACTGTCTGCTCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14056679  9 +  15232693 GA----CTGCTCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      306326 13 +    446445 GACTGTCTGCTCT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      167520 13 +   1371726 GACTACCTACTCT
i proCoq1.NW_012150019v1   C 0 I 97
s otoGar3.GL873550          15359494 13 -  18854210 GTCTTCCTCCTCT
i otoGar3.GL873550         C 0 I 5
s canFam3.chr12             70407859 13 -  72498081 GACAGCTTGCTCA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            513501 13 +    935526 GACTTGCTGCCCT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4502194 734 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=396476.000000
s hg38.chr6_KI270758v1_alt     60713 91 +     76752 -----ATG-----GGCCAGGGGGAACTCCTGTCAGGGAGCTGGTACTGAGAAGTGGAGACTGGGAACCAGGCGCGATGGGTCCCAGAGGTTGCCAAGCATA-
s panTro5.chr6             142758272 91 - 175400573 -----ATG-----GGCCAGGGGGAACTCCTGTCAGAGAGCTGGTACTGAGAGGTGGAGACTGGGAACAGGGCGCGATGGGTCCCGGAGGTTGCCAAGCACA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140905922 91 - 173848474 -----ATG-----GGCCAGGGGGAACTCCTGTCAGAGAGCTGGTACTGAGAGGTGGAGACTGGGAACAGGGCGCGATGGGTCCCGGAGGTTGCCAAGCACA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2430157 91 +   2807050 -----ATG-----GGCCAGGGGGAACCTCTGTCAGGGAGCTGGTACTGAGAGGTGGAGACTGGGAACAGGGCGCAATGGGTCCCAGAGGTTGCCAAGCACA-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744171 91 - 122973662 -----ATG-----GGCCAGGGGGAACTCCTGTCAGGGAGCTGGTACTGAGAGGTGGAGACTGGGGACGGGGCACGATGGGTCCCGGAGGTTGCCAAGCACA-
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138683100 91 - 171630274 -----ATG-----GGCCAGCGGGAACTCCTGTCAGGGAGCTGGTACTGAGAGGTGGAGGCCGGGGACAGGGTGCAATGGGTCCCGAAGGTTGCCAAGCACA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            239545 91 +   1154217 -----ATG-----GGGCAGCCGGAACTCCTGTCAGGGAGCTGGTACTGAGAGGTGGAGGCCAGGGACAGGGTGCAATGGGTCCCGAAAGTTGCCAAGCACA-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14056688 91 +  15232693 -----GTG-----GGCCAGGGGCAACTCCTGTCAGGGAGCTGGTACTGAGAGGTGGAGGCCGGGGACAGGGTGCAATGGGTCCCGAAGGTTGCCAAACACA-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      306339 91 +    446445 -----ATG-----GGCCAGGGGCAACTCCTGTCAGGAAGCTGGTACTGAGAGGTGGAGGCTGGGGACAGAGTGCAATGGGTCCTGAAGGTTGCCAAGCACA-
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15359512 91 -  18854210 -----CTG-----GGCCAGGAGGGGCTCATATCAGGGAGGTCGTACTGAGAGGTGGATGTTGGGCACAGGGCAGGATGAGTCCTGGGTGTTGCCAAGAACA-
i otoGar3.GL873550         I 5 I 1
s canFam3.chr12             70407872 96 -  72498081 -----ATGTGCCAGGCCAAGAAGGGTTCATGTCAGGGAGATGGTACTGAGAAATAGAGGTTGGGGACAAGACTGTATGGGTCTCAGGCATTGCCAAGGACT-
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            513514 97 +    935526 GTGTGCTG-----GGCCAGGAAGCATTCTCATCAGGGAGGTGGTACTGGGAGGTGAAGGTTGGGGATTGGGCAGGATGGTTTTTGGGTGTTGTCAGGGGCGA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4502194 734 + 123392446 I
e proCoq1.NW_012150019v1      167533 97 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=833470.000000
s hg38.chr6_KI270758v1_alt     60804 168 +     76752 TGTTGCAAGGAAA-GAGTCATCTCTGTGTCACCTGACAGTGAGTTTTAGGCAATGGATTGCAAAAGAAATGAGTTCTGGGCCATCCCCTCTCTTCCAAGCCCCATACCCTTGAAGGTGG-CCCCTGAACAAGTCAGAATCCCCC-TGACCGTGCCTCTGAATACCTCTCCT
s panTro5.chr6             142758363 168 - 175400573 TGTTGCAAAGAAA-GAGTCATCTCTGTGTCACCTGACAGTGAGTTTTAGGCAATGGATTGCAAAAGAAATGAGTTCTGGGCCATCCCCTCTCTTCCAAGCCCCATCCCCTTGAAGGTGG-CCCCTGAACAAGTCAGAATCCTCC-TGACCGTGCCTCTGAATACCTCTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140906013 168 - 173848474 TGTTGCAAAGAAA-GAGTCATCTCTGTGTCACCTGACAGTGAGTTTTAGGCGATGGATTGCAAAAGAAATGAGTTCTGGGCCATCCCCTCTCTTCCAAGCCCCATCCCCTTGAAGGTGG-CCCCTGAACAAGTCAGAATCCTCC-TGACCGTGCCTCTGAATACCTCTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2430248 168 +   2807050 TGTTGCAAGGAAA-GAGTCACCTCTGTGTCACCTGACAGTAAGTTTTAGGCAATGGATTGCAAAAGAAATGAGTTCTGGGCCATCCCCTCTCTTCCAAGCCCCATCCCCTTGAAGGTGG-CCCCTGAACAAGTCAGAATCCTCC-TGACCGTGCCTCTGAATACCTCTCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744262 168 - 122973662 TGTTGCAAGGAAA-GAGTCATCTCTGTGTCACCTGACAGTGGGTTTTAGGCAATGGATTGCAAAAGAAATGAGTTCTGGGCCATCCCCTCTCTTCCAAGCCCCATCCCCTTGAAGGTGG-CCCTTGAACAGGTCAGAATCCTCC-TGACCATGCCTCTGAATACCTCTCCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138683191 168 - 171630274 TGTTGCAATGAAAGGAGTCATCTCTGGGTCACCTCACAGTGAGTTTTAGGCAACGGATTGCAAAAGAAATAAGTACTGGGCCATCAGCTCTCTTCCAAGCCTCCTCTTCTTGAAGGTGGCCCCCTGAACAAGTC--AATCCCCC-TGACCGTGCCTCTGAATACCTCTCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            239636 167 +   1154217 TGTTGCAATGAAAGGAGTCATCTCTGTGTCACCTGATAGTGAGTTTTAGGCAAAGGATTGCAAAAGAAAGAAGTACTGGGCCATCACCTCTCTTCCAAGCCTCCTCTCCTTGAAGGTGG-CCCCTGAACAAGTC--AATCCCCC-TGACCTTGCCTCTGAATACCTCTTCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14056779 167 +  15232693 TGTTGCAATGAAAGGAGTCACCTCTGTGTCACCTGACAGTGAGTTTTAGGCAACAGATTGCAAAAGAAATAAGTACTGGGCCATCACCTCTCTTCCAAGCCTCCTTTTCTTGAAGGTGA-CCCCTGAACAAGTC--AATCCCCC-TGACCTTGCCTCTGAATACCTCTCCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      306430 167 +    446445 TGTTGCAATGAAAGGAGTTATCTCTGTGTCACCTGACAGTGAGTTTTAGGCAACAGATTGCAAAAGAAATAAGTACTGGGCCATCACCTCTCTTCCAAGCCTCCTCCTCTTGAAGGTGG-CCCCTGCACAAGTC--AATCCCCT-TGACCGTGCCTCTGAATACCTCTCCT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      167630 169 +   1371726 TGTTGTGAGGAAAGGAGCTATCGCTGTGTCACCTGGGAATGAGGTTTCGGCAATGGGTTGCTATGGAAGTGACGCCTGGGCCATCACCTCTCCTCCAATCCTCCTCTCCCTTAAGGTGG-CCCCTGAACAGATCAGAACCTCCC-TGACTGTGCCTCTGAACACCTCTCCT
i proCoq1.NW_012150019v1   I 97 I 369
s otoGar3.GL873550          15359604 166 -  18854210 TGTTGTGAGGACAGGAGTCATCTTTGTGTCACCAGAAAATGGATTTTAGGCAATGAGCTTCTATGGAAGTGAGTACTGGTCCATCGCCTGTGCTCCAG---ACTTCTTCCTTAAGGTGG-CCCCTGCACAGGTCAGAATCTTCC-TGTCTACACCTCTGAACACCTCTCCT
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70407969 168 -  72498081 TATAAGGAGGGAGGGAGTCATCCCTGTGTCATATGAGAATGTA-TTCAGACAATGAGTTGTTATAGAAACCAGTACTGGGCCATTACCTTTCCTCCATGCATCCTCTCCATAAAAATGG-CTCTAAGAAGGGTCAAAATCTTCC-TTGACTAGTCTCTGGACACTTTTCCT
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            513611 170 +    935526 TGCTGCGAGGAAGGGATCCATCTCTTTGTCACCTGAGAATGGGTTCTGGGCAATGGGTTGCTATGGAAGTGAGTATTGGGCCATGACCTCTCCTCCAACCCTTCTCTCTCTGGAGACAG-CCCCTAGACAGGTCAGAATCTCCCTTGACTATGCCTCTGGGCACCTCTCCT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4502194 734 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1487796.000000
s hg38.chr6_KI270758v1_alt     60972 373 +     76752 CT--TATAACATGATTGGCAAGTGCCCTATCTACACCTTCCCCAAAACTTCCTTCTCTGGGACTCTGCACCC-CACTTCATTCTTTGGTTCCCTAATGTAGGTTCTCTGGACATTTTTTCTGTACCCACAAGAACATCTCCAACATACC---AGGAAAATAACAATCTGGGATTCTGGAAACCAGAATGATATTCTGAGTCCC-GATCA-TTTCTCATTTCTCTAACTGCTTGAAGGGGGCTCCCATGATCATTGAAGTACCAACTCAAG-GTGTTTTAATTCTACTCAGG---AAAATCTG--CTGGAGACTGATCTTTTCTGAGACCTATCCTGTTCCAGGTTCTCTGAGATCCAGCCTATCAATCA-AATCTGACATCTGATAAT
s panTro5.chr6             142758531 374 - 175400573 CT--TATAACATGATTAGCAAGTGCCCTATCTACACCTTCCCCAAAACTTCCTTCTCTGGGGCTCTGCACCC-CGCTTCATTCTTTGGTTCCCTAATGTAGGTTCTCTGGACATTTTTTCTGTACCCACAAGAACATCTCCAACATATC---AGGAAAATAACAATCTGGGATTCTGGAAACCAGAATGATATTCTGAGTCCT-GATCA-TTTCTCATTTCTCTAACTGCTTGAAGGGGGCTCCCATGATCATTGAAGTACCAACTCAAG-GTACTTTAATTCTACTCAGG---AAAATCTG--CTGGAGACTGATCTTTTCAGAGACCTATCCTCTTCCAGGTTCTCTGAGATCCGGCCTATCAATCACAATCTGACATCTGATAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140906181 374 - 173848474 CT--TATAACATGATTAGCAAGTGCCCTATCTACACCTTCCCCAAAACTTCCTTCTCTGGGGCTCTGCACCC-CGCTTCATTCTTTGGTTCCCTAATGTAGGTTCTCTGGACATTTTTTCTGTACCCACAAGAACATCTCCAACATATC---AGGAAAATAACAATCTGGGATTCTGGAAACCAGAATGATATTCTGAGTCCT-GATCA-TTTCTCATTTCTCTAACTGCTTGAAGGGGGCTCCCATGATCATTGAAGTACCAACTCAAG-GTACTTTAATTCTACTCAGG---AAAATCTG--CTGGAGACTGATCTTTTCAGAGACCTATCCTCTTCCAGGTTCTCTGAGATCCGGCCTATCAATCACAATCTGACATCTGATAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2430416 374 +   2807050 CT--TATAACATGATTAGCAAGTGCCCTATCTACACCTTCCCCAAAACTTCCTTCTCTGGGACTCTGCACAC-TGCTTCATTCTTTGGTTCCCTAATGTAGGTTCTCTGGACATTTTTTCTGTACCCACAAGAACATCTCCAACATACC---AGGAAAATAACAATCTGGGATTTTGGAAACCAGAATGATATTCTGAGTCCT-GATCA-TTTCTCATTTCTCTAACTGCTTGAAGGGGGCTGCCATGATCATTGAAGTACTAACTCAAG-GTGTTTTAATTCTACTCAGG---AAAATCTG--CTGGAGACTGATCTTTTCAGAGACCTATCCTGTTCCAGGTTCTCTGAGATCCGGCCTATCAATCACAATCTGACATCTGATAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744430 374 - 122973662 CTTATATAACATGGTTGGCAAGTGCCCTATCTACACCTTCCCCAAAACTTCCTTCTCTGGGACTCTGCAC-C-CGCTTCATTCTTTAGTTCCCTAATGTAGGTTCTCTGGACATTTTTTCTGTACCCACAAGAACATCTCCAACATATC---AGGAAAATAACAATCTGGGATTCTGGAAACCAGAATGATATTCTGAGTCCT-GATCA--TTCTCCTTTCTCTAACTGCTTGAAGGGGGCTCCCATGATCATCGAAGTACCAACTCAAG-GTGTTTTAATTCTACTCAGG---AAAATCTG--CTGGAGACTGATCTTTTCAGAGACCTATCCTGTTCCAGGTTCTCTGAGATCCGGCCTATCAATCACAATCTGACATCTGATAAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138683359 377 - 171630274 CT--TGTAACGTGATTGGCAAGTGCCCTATCTACACCTTCCCCAAAACTTCCTTCTCTGGGACTCCACAGCC-CTCTTCATTCTTTGGTTCCCTAACGTAGGTTCTCTGGACATTTTTTCTGTACCCATAAGAACATCTCCAACATATCC-AAGGAAAAT-ACAATCTGGGATTCTGGAAACCAAGATGATAGTCTGAGTCCT-GATCACTTTCTCCTTTCTCTACCTGCTTGAAGGGGGCTCCCATGATCATCAGCATACCAAGTCAAGGGTGCTTTAATTCTACTCAGG---AAAATCTG--CTGGAGACCAATCCCTTCAGAGACCTATTCTGTCCCAGGTTCTCTGAGATTCGGCGTAACAATCACAGTCTGACATCTGATAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            239803 378 +   1154217 CT--TATAATGTGATCGGCAAGTGCCCCATCTACACCTTCCCGAAAACTTCCTTCTCTGGGACTCCACAGCC-CTCTTCATTCTTTGGTTCCCTAATGTAGGTTCTCTGGACATTTTTTTTGTACCCACAAGAACATCTCCAACATATCC-AAGGAAAATAACAATCTGGGATTCTGGAAACCAAGATGATATTCTGAGTCCT-AATCACTTTCTCCTTTCTCTAACTGCTTGAAGGGGGCTCCCATGATCATCAGCATACCAAGTCAAGGGTGCTTTAATTCTACTCAGG---AAAATCTG--CTAGAGACTGATCCCTTCAGAGACCTATTCTGTCCCATGTTCTCTGGGATTCAGCCTACCAATCGCAATCTGACATCTGATAAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14056946 376 +  15232693 CT--TGTAACGTGATTGACAAGTGCCCTATCTGCACCTTCCCCAAAACTTCCTTCTCTGGGACTCCACAGCC-CTCTTCATTCTTTGGTTCCCTAATGTAGGTTCTCTGGATGTTTTTTCTGTACCCACAAGAACATCTCCAACATATCC-AAGGAAAATAACAATCTGGGATTCTGGAAACCAAGATGATAT--TGAGTCCT-GATCGCTTTCTCCTTTCTCTAACTGCTTGAAGGGGGCTTCCATGATCATTAGCATACCAAGTCAAGGGTGCTTTAATTCTACTCAGG---AAAATCTG--CTGGAGACTGATCCCTTCAGAGACCTATTCTGTCCCAGGTTCTCTGGGATTCAGCCTACCAATCACAATCTGACATCTGATAAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      306597 378 +    446445 CT--TACAGCGCGATCAGCAAGTGCCCTATCTACACCTTCCCCAAAACTTCCTTCTCTGGGACTCCACAGCC-CTCTTCATTCTTTGGTTTCCTAATGTAGGTTCTCTGGACATTTTTTCTGTACCCACAAGAACATCTGCAACATATCC-AAGGAAAATAACAATCTGGGATTCTGGAAACCAAGATGATATTCTGAGTCCT-GATCGCTTTCTTCTTTCTCTAACTGCTTGAAGGGGGCTCCCATGATCATCAGCATACCAAGTCAAGCATGCTTCAATTCAACTCAGG---AAAATCTG--CTGGAGACTGATCCCTTCAGAGACCTGTTCTGTCCCAGGTTCTCTGGGATTCAGCCTGCCAATCACAATCTGACATCTAATAAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15359770 366 -  18854210 TC--AATAACATG------AAGTGCCCTGTCTACAGCTTCCCCAGGACTTTCTTCTTTGGAACTCTGCAACCTCTCTTCATTCTTTGGTTCCCTAATATCGATTTTTTGGACATCTTTCCTGCACGCAGAAGAGCTTCTTCAACATCTCC-AAGGAAAACAACAACTTTGGATTCTGGAAACACAGATGATGTTCTGAGTTCTAGAGCT-TTTCAACTTTCACCAACTGCTTGAA-GGGACTCACATGATAATCAAGG-ACC---------ATATTTTAATCTTACTCTGGCTTCAAATCTG-CCTGGAGACTGACCCCTTCAGAGACCTATTCTATTCTGGATTCCCTGATATTCAGCCTACTGATTACAATCTGATATTTGACGAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70408137 354 -  72498081 TT--TATAACATGACCAACAAGTGTTCTGTATACAC-----------TTTTCTTTTCTGAAACTCTATA--C-ATCTTCATTTTTTGA-TCCTTAATGTAGGTTCTCCTGACAACTTTCCTACACCCAGAAGA--TTTTGCAACATCTCCAAGGGAAAAAAATAACCTTGGATTCTGGAAACAAAGCTTGTATTCCAAGTCCC-AGT---CTTCTTCTTTTACCAGCTGCTTGAA-TGGGCTCACACCATCATCCAGCTATCAAATCAAG-ATGCTTTAATGTTACTCTGGCTTCAAATCTGATCTAGAGACTGATCCCTTCAGAGAAATACCCTATCCCAAGCTCTCTGATAGCCTGCC-ACTAATCACAACCTGATAT--------
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            513781 335 +    935526 TT--TATAACGTGACCAACACGTGCCCAATCTACACGTTCTCCAGAACATTATTCTCTGGAACTCTGCACCCTCTCTTCATTCTTTGG---------------TCTCCAGACATCCTTCCTGAACCCAGCAAATCCTCT-------------GGGACAATATCCA---GGGACTCTGGAAACCAGGAAGATATTCCAGGTCCC-AGGCCTCCTCTTCTTTCACCATTTGCTCGAAGAAGACTCACGAGATCATTGAGGTGCCAGATCAAA-GTGCGTTAACCTCACTCCAGCTTCAAATCTGACCTGGAGACTGGTTCCTTTAGAGACCCATCGTATTCCACG------------------ATCAGATAACATCAGATTTCTGATGAC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4502194 734 + 123392446 I
e proCoq1.NW_012150019v1      167799 369 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=243142.000000
s hg38.chr6_KI270758v1_alt     61345 43 +     76752 CAAGGACCCTTAGAAAATCCCATGGGAAATACAATTTAGCCTA
s panTro5.chr6             142758905 43 - 175400573 CAAGGACCCTTAGAAAATCCCATGGGAAATACAATTTAGCCTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140906555 43 - 173848474 CAAGGACCCTTAGAAAATCCCATGGGAAATACAATTTAGCCTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2430790 43 +   2807050 CAAGGACCCTTAGAAAATCCCATGGGAAATACAATTTAGCCTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744804 43 - 122973662 CAAGGACCCTTAGAAAACCCCATGGTAAATACAAGTTAGCCTA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138683736 43 - 171630274 CAAGGACCCTTAGAAAACCCCATGGGAAATACAATTTAGCCTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            240181 43 +   1154217 CAAGGACCCTTAGAAAATTCCATGAGAAATACAATTTAGCCTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14057322 43 +  15232693 CAAGGAACCTTAGAAAATCCCATGGGAAATACAGATTAGTCTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      306975 43 +    446445 CAAGGAACCTTAGAAAATCCCATGGGAAATACAGTTTAGCCTA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4502928 43 + 123392446 CAAGGACCCTTAGGAAATGCATTGGAAAATACACTTTAGGCTA
i micMur3.chr6             I 734 C 0
s proCoq1.NW_012150019v1      168168 43 +   1371726 CAAGGACCCTTAGGAGATAAAATGGAAAATGCACTTTAGCCTA
i proCoq1.NW_012150019v1   I 369 C 0
s otoGar3.GL873550          15360136 43 -  18854210 CAAGGAACCTTAGGAAACCCAATGGGAAATATAATTTGTACTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70408491 36 -  72498081 ---GG----TTAGAAAATCCAATGGGAAATGTAATTAGGCCTA
i canFam3.chr12            C 0 I 4
s dasNov3.JH569424            514116 33 +    935526 ----------CAGAGTATCCCAAGGGTAATGCAATCTAGCCTA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=229484.000000
s hg38.chr6_KI270758v1_alt     61388 42 +     76752 CAGGAAGAAATGAAAGGAATAATCAAGTATTTGGTCAGTTTC
s panTro5.chr6             142758948 42 - 175400573 CAGGAGGAAATGAAAGGAATAATCAAGCATTTGGTCAGTTTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140906598 42 - 173848474 CAGGAGGAAATGAAAGGAATAATCAAGCATTTGGTCAGTTTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2430833 42 +   2807050 CAGGAAGAAATGAAAGGAATAATCAAGGATTTGGTCAGTTTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744847 42 - 122973662 CAGGAAGAAACGAAAGGAATAATCAAGTATTTGGTCAGtttc
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138683779 42 - 171630274 CGGGAAGAAATGAAAGGAATAATCAAGAATTTGATCAGTTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            240224 42 +   1154217 TGGGAAGAAATGAAAGAAATAATCAAGAATTTGATCAGTTCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14057365 41 +  15232693 CAGGAAGAAATGAAAGGAATAATCAAG-ATTTGATCAGTTCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307018 42 +    446445 TGGGAAGAAATGAAAGGAATAATCAAGAATTTGATCCGTTCC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4502971 42 + 123392446 GAGGAAGAAATGAAAGGAATAATCAAGTATTTGATCAGTTTC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      168211 42 +   1371726 GAGAAAGAAATGAAAGGGATAATCAAGTATTTGATCAGTTTC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15360179 42 -  18854210 GAGTAAAAACTGAGAGGAATAGTTAAGTATTTGTTCAATTTC
i otoGar3.GL873550         C 0 C 0
s dasNov3.JH569424            514149 42 +    935526 CAAGAGGAAATGCAAGGAATGCTCAAGCATTTGATCATTATT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e canFam3.chr12             70408527  4 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=902.000000
s hg38.chr6_KI270758v1_alt     61430  4 +     76752 TT------------------TT
s panTro5.chr6             142758990  4 - 175400573 TT------------------TT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140906640  3 - 173848474 -T------------------TT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2430875  4 +   2807050 TT------------------TT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744889  4 - 122973662 tt------------------tt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138683821  3 - 171630274 t-------------------tt
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            240266 22 +   1154217 TTtttttctttttctttttctt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14057406  4 +  15232693 Gt------------------tt
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307060  4 +    446445 tt------------------tt
i aotNan1.NW_018508875v1   C 0 C 0
s dasNov3.JH569424            514191  4 +    935526 TT------------------TT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4503013  0 + 123392446 C
e proCoq1.NW_012150019v1      168253  0 +   1371726 C
e canFam3.chr12             70408527  4 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15360221  0 -  18854210 C

a score=882675.000000
s hg38.chr6_KI270758v1_alt     61434 309 +     76752 tttctttttcttttcttt----------tt---ttttttttctgagacagagtctcactc-tgtcacccaggctggagtgcagtggcatgatctcagctaactgcaacctctgcatcccaggttcaagcaattctcttgcctcagtctcatgagtagctgggattacag------gcatgtgccaccatgcctggcctatttttgtatttttagtagagatggggtttcactttgttggccaggctggtctcaaacttccggcctcaagtgatccacttgcctcggcctcccaaagtgctggaattacaggcatgagccaccacacctg
s panTro5.chr6             142758994 316 - 175400573 TTTCTTTttcttttcttt---ctttttttt---ttttttttctgagacagagtctcactc-tgtcacccaggctggagtgcagtggcatgatctcagctgactgcaacctctgcctcccgggttcaagcaattctcttgcctcagtctcatgagtagctgggattacag------gcatgtgccaccatgcccggcctatttttgtatttttagtagagatggggtttcactttgttggccaggctggtctcaaacttctggcctcaagtgatccactcgcctcagcctcccaaagtgctggaattacaggcatgagccaccacacctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140906643 319 - 173848474 TTTCTTTTTCttttcttttcttcttttttt---tttttttcttgagacagagtctcactc-tgtcacccaggctggagtgcagtggcatgatctcagctgactgcaacctctgcctcccgggttcaagcaattctcttgcctcagtctcatgagtagctgggattacag------gcatgtgccaccatgcccggcctatttttgtatttttagtagagatggggtttcactttgttggccaggctggtctcaaacttctggcctcaagtgatccactcgcctcagcctcccaaagtgctggaattacaggcatgagccaccacacctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2430879 317 +   2807050 TTTCTTTTTCttttctat--ttattttttt---ttttttttctgagacagagtctcactc-tgtcacccaggctggagtgcagtggcatgatctcagctgactgcaacctctgcctcccgggttcaagcaattctcttgcctcagtctcatgagtagctgggattacag------gcatatgccaccatgcccagcctatttttgtatttttagtagagatggggtttcactttgttggccaggctggtctcaaacttctggcctcaagtgatccactcgcctcggcctcccaaagtgctggaattacaggcatgagccaccacacctg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45744893 298 - 122973662 tttcttt---------------------tt---ttttttttctgagacagagtgtcactc-tgtcacccaggctggagtgcagtggcgtgatctcagctgactgcaacctctgcctcccgggttcaagcgattctcttgcctcagtctcatgagtagctgggattacag------gtgtgtgccaccatgcccagcctatttttgtatctttagtatagatggagtttcactttgttggccgggctggtctcaaacttctggcctcaattgatccactcgccttggcctcccaaagtgctggaattacaggcatgagccaccacacctg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138683824 305 - 171630274 tttctttttctttt--------------tc---ttttttttctgagacagagtcttgctg-tgtcatgcaggctggaatgcagtggcgtgatcttggctcactgcaacctccacctacgaggttcaagcaattctcttgcctcagtctcaagagtagctcggattacag------gcatgtgcaaccatgcccggcctatttttgtatttttagtagagatggagtttcactttgttggccaggctggtctcaaactcctggcctcaagtgatccacttgcctcagcctcccacagtgctgagattacaggcaggagccaccacccctg
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            240288 309 +   1154217 tttctttttctttt--------------tctttttttttttctgagacagagtcttgctgttatcacccaggctggagtgcagtggcgtgatcttggctcactgcaacctccacctcccaggttcaagcaattctcttgcctcagtctcaagagtagctcggattacag------gcgtgtgcaaccacgcccagactatttttgtatttttagtagagatggagtttcactttcttggccaggctggtctcaaactcctggcctcaagtgatccacttgcctcagcctcccacagtgctgggattacaggcatgggccgccgcccctg
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14057410 305 +  15232693 tttctttttctttt--------------tc---ttttttttctgagacagagtcttgctg-tctcacccaggctggagtgcagtggtatgatcttggctcagtgcaacctccacctcccaggttcaagcaattctcttgcctcagtctcaagagtagcttggattacag------gcgtgtgcaaccacgcctggcctatttttgtatttttagtagagatggaatttcactttgttggccaggctggtctcaatctcctggccttaagtgatccacttgccttggcctcccacagtgctgggattacaggcatgagccaccgcccttg
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307064 311 +    446445 tttctttttctttt--------------tc---ttttttttctgagacagagtcttgctg-tgtcacccaggctggagtgcagtggcatgatcttggctcactgcaacctccacctgccaggttcaagcaattctcttgcctcagtctcatgagtagctcagattacaggtgtgtgtgtgtgcaaccacgcctggactatttttgtatttttagtagagatggagtttcactttgttggccaggctggtctcaaactcctggcctcaagtgatccacttgcctcagcctcccacagtgctgggattacaggcatgagccacggcccctg
i aotNan1.NW_018508875v1   C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4503013   0 + 123392446 C
e proCoq1.NW_012150019v1      168253   0 +   1371726 C
e canFam3.chr12             70408527   4 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15360221   0 -  18854210 C
e dasNov3.JH569424            514195   0 +    935526 C

a score=48164.000000
s hg38.chr6_KI270758v1_alt     61743 14 +     76752 gccTGATCAGTTTA
s panTro5.chr6             142759310 14 - 175400573 gccTGATCAGTTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140906962 14 - 173848474 gccTGATCAGTTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431196 14 +   2807050 gccTGATCAGTTTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745191 14 - 122973662 gccTGATCAGTTTA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684129 14 - 171630274 gccTGATCAGTTTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            240597 14 +   1154217 gccTGATCAATTTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14057715 14 +  15232693 gccTGATCAGTTTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307375 14 +    446445 gccTGATCAGTTTC
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70408531 14 -  72498081 GTTTGATAGGTTTC
i canFam3.chr12            I 4 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4503013  0 + 123392446 C
e proCoq1.NW_012150019v1      168253  0 +   1371726 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15360221  0 -  18854210 C
e dasNov3.JH569424            514195  0 +    935526 C

a score=263117.000000
s hg38.chr6_KI270758v1_alt     61757 43 +     76752 TTTAAGATGGTGACAATTAATTGTCCACATAGGTGGAACTGAG
s panTro5.chr6             142759324 43 - 175400573 TTTAAGATGGTGACAATTAATTGTCCACATAGGTGGAACTGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140906976 43 - 173848474 TTTAAGATGGTGACAATTAATTGTCCACATAGGTGGAACTGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431210 43 +   2807050 TTTAAGATGGTGACAATTAATTGTCCACATAGGTGGAACTGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745205 43 - 122973662 TTTAAGATGGTGACAATTAATTGTCCACATAGGTGGAACTGAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684143 43 - 171630274 TTTAAGATGGTGACAATTAATTGTTCACATAGGTGGAACTGAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            240611 43 +   1154217 TTTAAGATAGTGACAATTAATTGTTCACATAGGTGGAACTGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14057729 43 +  15232693 TTTAAGATGGTGAATTTTAATTGTTCACATAGGTGGAACTGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307389 43 +    446445 TTTAAGATGGTGACAATTAATTGTTCACATAGGTGGAACTGAG
i aotNan1.NW_018508875v1   C 0 I 25
s micMur3.chr6               4503013 43 + 123392446 TTTAAGATGATGACAATTAATTGTCCATATAAGTGGAGCTGAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      168253 43 +   1371726 TTTAAGAAGATGACAATGAATTGTCCATGTAAGTGGAGCTGAG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15360221 43 -  18854210 TTTAAGATGATGACAATTCACTGTCCATGTAAGTAGAGCTGGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70408545 35 -  72498081 TTTATGAAGCTGAC----AATTTTCCAAGTGGGTA----TGAG
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            514195 43 +    935526 TTTAAGGAGATTACAATAAATTATCCATGTATGTGGGCCTGAG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=5344.000000
s hg38.chr6_KI270758v1_alt     61800 6 +     76752 AAAATT
s panTro5.chr6             142759367 6 - 175400573 AAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140907019 6 - 173848474 AAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431253 6 +   2807050 AAAATA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745248 6 - 122973662 aaaatt
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016107339v1    14057772 5 +  15232693 -AAATT
i cebCap1.NW_016107339v1   C 0 I 17
s micMur3.chr6               4503056 5 + 123392446 AAAAC-
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      168296 5 +   1371726 AAAAC-
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15360264 5 -  18854210 AAAAT-
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70408580 5 -  72498081 GAAGT-
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e aotNan1.NW_018508875v1      307432 25 +    446445 I
e calJac3.chr4             138684186 0 - 171630274 C
e saiBol1.JH378315            240654 0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            514238 0 +    935526 C

a score=10827.000000
s hg38.chr6_KI270758v1_alt     61806 20 +     76752 AAAAAAAAAAA-------ATACAGTTA
s panTro5.chr6             142759373 18 - 175400573 AAAAAAAAAA---------TACAGTTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140907025 18 - 173848474 AAAAAAAAAA---------TACAGTTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431259 21 +   2807050 AAAAATATATA------TATACAGTTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745254 22 - 122973662 aaaaaaaaaaa-----aaatacagtta
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684186 24 - 171630274 --AAAAAAAATTTTTTTAATACAGTT-
i calJac3.chr4             C 0 I 1
s saiBol1.JH378315            240654 24 +   1154217 --ATAAAAATTTTTTTAAATACAGTT-
i saiBol1.JH378315         C 0 I 1
s micMur3.chr6               4503061 14 + 123392446 ----AAAAAG---------CACAGTTA
i micMur3.chr6             C 0 I 2
s proCoq1.NW_012150019v1      168301 14 +   1371726 ----AAAAAG---------TACAGTTA
i proCoq1.NW_012150019v1   C 0 I 2
s otoGar3.GL873550          15360269 13 -  18854210 ----AAAAAG---------CATAGTT-
i otoGar3.GL873550         C 0 I 2
s canFam3.chr12             70408585 14 -  72498081 ----GAAAAA---------TACAGGTA
i canFam3.chr12            C 0 I 1
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14057777 17 +  15232693 I
e aotNan1.NW_018508875v1      307432 25 +    446445 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            514238  0 +    935526 C

a score=28808.000000
s hg38.chr6_KI270758v1_alt     61826 10 +     76752 AAAAAAAGTG
s panTro5.chr6             142759391  9 - 175400573 AAAAAA-GTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140907043  9 - 173848474 AAAAAA-GTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431280 10 +   2807050 AAAAAAAGTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745276  9 - 122973662 aaaaaa-GTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684211  9 - 171630274 AAAAGA-GTG
i calJac3.chr4             I 1 C 0
s saiBol1.JH378315            240679  9 +   1154217 TAAAAA-GTG
i saiBol1.JH378315         I 1 C 0
s cebCap1.NW_016107339v1    14057794  9 +  15232693 TAAAAA-GTG
i cebCap1.NW_016107339v1   I 17 C 0
s aotNan1.NW_018508875v1      307457  9 +    446445 TAAAAA-GTG
i aotNan1.NW_018508875v1   I 25 C 0
s micMur3.chr6               4503077  9 + 123392446 AAAAGA-TTA
i micMur3.chr6             I 2 C 0
s proCoq1.NW_012150019v1      168317  9 +   1371726 AAAAGA-TTG
i proCoq1.NW_012150019v1   I 2 C 0
s otoGar3.GL873550          15360284  9 -  18854210 AAAATA-TTG
i otoGar3.GL873550         I 2 I 275
s canFam3.chr12             70408600  9 -  72498081 AAAAGA-GTA
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            514238  2 +    935526 --------TG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=801961.000000
s hg38.chr6_KI270758v1_alt     61836 160 +     76752 AGAGAAAATACAGCTGCATAAGGGGGAGAAAA-TCTGATCACTAAAATATAATCTTGAAAATCTTATGAAGTGTTGTAAAATCCCTCCTCCAGACTTTTTGAGAATGTTGATACAGGAAATTGAGTCAGGAAAAAAATTTTAGACTTTCCGATCCAAGCGA
s panTro5.chr6             142759400 161 - 175400573 AGAGAAAATACAGCTGCATAAGGGGGAGAAAAATCTGATCACTAAAATATAATCTTGAAAATCTTATGAAGTGTTGTAAAATCCCTCCTCCAGACTTTTTGAGAAAGTTGATACAGGAAATTGAGTCAGGAAAAAAGTTTTAGACTTTCCGATCCAAGCGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140907052 161 - 173848474 AGAGAAAATACAGCTGCATAAGGGGGAGAAAAATCTGATCACTAAAATATAATCTTGAAAATCTTATGAAGTGTTGTAAAATCCCTCCTCCAGACTTTTTGAGAAAGTTGATACAGGAAATTGAGTCAGGAAAAAAGTTTTAGACTTTCCGATCCAAGCGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431290 161 +   2807050 AAAGAAAATACAGCTGCATAAGGGGGAGAAAAATCTGATCACTAAAATATAATCTTGAAAATCTTATGAAGTGTTGTAAAATCCCTCCTCCAGACTTTTTGAGAAAGTTGATACAGGAAATTGAGCCAGGAAAAAAATTTTAGACTTTCCGATCCAAGCGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745285 161 - 122973662 GGAGAAAATACAGCTGCATAAGAGGGAGAAAAATCTGATCACTAAAATATAATCTTGAAAATCTTATGAAGTGTTGTAAAATCCCTCCTCCAGACTTTTTGAGAAAGTTAATACAGGAAATTGAGTCAGGAAAAAAATTTTAGACTTCCCGATCCAAGCGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684220 154 - 171630274 AGCAA------AGCTGCTGAAGAGGGACAAAAATCTGATCACTAAAATGTAATCTTGGAAATCTTATAAAGTGTTGTAAAATCCCTACTCCAGATTTTCTGAGAAAGTTAATACAGGAAATGGAGTTAGGAAAAAA-TTTTAGACTTTCCAATCCAGGAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            240688 157 +   1154217 AGTAAAAATACAGCTGCTTAAGAGGGAGAAAAATCTGATCATTAAAATATAATTTTGGAAATCTTATAAAG---TGTAAAATCCCTACTCCAGATTTTTTGAGAAAGTTAATACAAGAAATGGAGTTAGGAAAAAA-TTTTAGACTTTCCAATCCAGGAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14057803 160 +  15232693 GGTAAAAATACAGCTGCTTAAGAGGGAGAAAAATCTGATCACTAAAATATAATCTTGGAAATCTTATAAAGTGTTGTAAAATCCCTACTCCAGATTTTTTGAGAAAGTTAATACAGGAAATGGAGTTAGGAAAAAA-TTTTAGACTTTCCAATCCAGGAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307466 160 +    446445 AGCGAAAATACAGCTGCTTAAGGGGGAGAAAAATCTGATTACTAAAATGTAATCTTGGGAATCTTATAAAGTGTTGCAAAATCCCTACTCCAGATTTTTTGAGAAAGTTAAAACAGGAAATGGAGTTAGGAAAAAA-TTTTAGACTTTCCAATCCAGGAGA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4503086 148 + 123392446 AGAGAAAATACAGCTGAAT-ATAAGGAGAAAAATCTGATCACTAAGATATAATCTTGAAACTTAAATGAAGTGTTGTGAAATCCCTACTTC----------AGAAGGTTAATAGAGGATGTTGAATGAGGAAAAA--TTTTAGGCATTCTAATCCAAGAGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      168326 143 +   1371726 AGAGAAAATACAGCTGAAT-ATAAGGAGAAAAATCTGATCACTAAGATATAATCTTGA-----AAATCAAGTGTTGTGAAATCCCTACTTC----------AGAAGGTTAATAGAGGATGTCGAGTGAGGAAAAA--TTTTAGACATTCTAATCCAAGAGA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15360568 147 -  18854210 aaagaaaATACAGTTGAAT-ATAAGGAGAAAAATCTGATCACTGAGCTATAATCTTGAAAATTATATTAAATGCTGTGAAATTCCTGCTTC----------AGAAGATTAATAGAGGATGTGGAGTGAAGAAAAA--TCTTAGACATTCTAATTC-AGAGA
i otoGar3.GL873550         I 275 C 0
s canFam3.chr12             70408609 147 -  72498081 AAAGAAAATAAAGCTGAAT-AGAAGGAGGAAA-TCTGATCACTGAGATATAATCTTGAATATCATATGAAA---TGTAGAATTCCTATGCCAGATTTTTTCAGAAAGTGGA-----GACTTGGAGT--GGAAATTTTTTTTAGAAATTATATTCCaaga--
i canFam3.chr12            C 0 I 561
s dasNov3.JH569424            514240 158 +    935526 AGAGAAAATACAGCTGAAT-GTGAGGGGGGATATCTGATCACTAAGATATCATATTGAAAATTATATGAAGTATTGTGGAATGCCTGCTCTAGAGATTTTCAGAAAGTTAACAGAGGACCTGG--CAGGGGAGAAATGCTTAGACACGCCATTCCAAGAGA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=525909.000000
s hg38.chr6_KI270758v1_alt     61996  91 +     76752 AA----AATTATGTATCATCTATACGAACATGTCAATTTTATTGTTAGAGCAAAATAAAGTGCACAATTTAAAATTAATAA-TTATAAAATAAA----TA
s panTro5.chr6             142759561  95 - 175400573 AA----AATTATGTATCATCTATATGAACATGTCAATTTTATTGTTAGAGCAAAATAAAGTGCACAATTTAAAATTAATAA-TTATAAAATAAACAAATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140907213  95 - 173848474 AA----AATTATGTATCATCTATATGAACATGTCAATTTTATTGTTAGAGCAAAATAAAGTGCACAATTTAAAATTAATAA-TTATAAAATAAACAAATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431451  95 +   2807050 AA----AATTATGTATCATCTATACGAACATGTCAATTTTATTGTTAGAGCAAAATAAAGTGCACCATTTAAAATTAATAA-TTATAAAATAAACAAATA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745446  95 - 122973662 AA----AATTATTTATCATCTATATAAACATGTCAATTTTATCATTAGAGCAAAATAAAGTGCACAATTTAAAACTAATGA-TTATAAAAGAAACAAATA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684374  95 - 171630274 AA----AATTACGTATCACCTATATGAACATGTCAATTTTATTGTTAGAGCAAAATAAAGTGCACaatttaaaattaataa-ttataaaataaacaaata
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            240845  95 +   1154217 AA----CATTATGTATCATCTATATGAACATGTCAATTTTATTGTTAGAACAAAATAAAGTGCACAATTTAGAATTAATAA-TTACAAAATAAACACATA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14057963  95 +  15232693 AA----AATTATGTACCACCTATATGAACATGTCAATTTTATTGTTAGAGGAAAATAAAGTGCACAATTTAAAATTAATAA-TTATAAAATAAACAAATA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307626  95 +    446445 AA----AATTATGTATCATCTATATGAACATGTCAATTTTATTGTTAGAACAAAATTAAGTGCACAATTTAAAATTAATAA-TTATAAAATAAACAAATA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4503234  95 + 123392446 AAAATTAATTATGCATCATGTATATGAAAATTTCAGTTTTATTTACAGAGAAAAATAAAATGCACAATTTAAAATTAATAA-TTATAAGATAAATA----
i micMur3.chr6             C 0 I 4
s proCoq1.NW_012150019v1      168469  90 +   1371726 GAAATTAATTATGTATCATGTATATGAAAATGTCA-----ATTTACAGAGAAAAATAAAATGCACAATTTAAAATTAATAA-TTATGAGATAAATA----
i proCoq1.NW_012150019v1   C 0 I 852
s otoGar3.GL873550          15360715  94 -  18854210 -AAATTAATTATGCTTCATATGCATGAAAATTTCAACTTTATTTTCAGAACAAAATAAAGCTCACAATTTGAAAATAATTA-TAAATAAACAAACA----
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70409317  88 -  72498081 AA----AATTTTGTATTGTGTATATGAAGATGCCAATTTTATTTTTAGAGCAAAA--AAGTGCACaa-ttaaaattaataa-ttataaaataaata----
i canFam3.chr12            I 561 I 4
s dasNov3.JH569424            514398 100 +    935526 AAGATTAATTACGCATCTTACATATGAAAATAAAAATTCTATGTTTAAAGCAAAATAAAGCCCACaatttaaaattaatagtttataaaataaataaaCA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=356936.000000
s hg38.chr6_KI270758v1_alt     62087 86 +     76752 TAAGCACTACATGTAACAC--AGTAAA-AATATTTG----AAAGTCAT------AATGAGTTCAAGAAGATAAACTATATGTGGAAGACAGAAGAATGT
s panTro5.chr6             142759656 86 - 175400573 TAAGCAGTACCTGTAACAC--AGTAAA-AATATTTT----AAAGTCAT------AATGAGTTCAAGAAGATAAACTGTATGTGGAAGACAGAAGAATGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140907308 85 - 173848474 TAAGCAGTACCTGTAACAC--AGT-AA-AATATTTT----AAAGTCAT------AATGAGTTCAAGAAGATAAACTGTATGTGGAAGACAGAAGAATGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431546 86 +   2807050 TAAGCAGTACATGTAACAC--AGTAAA-AATATTTT----AAAGTTAT------AATGAGTTCAAGAAGATAAACTATATGTGGAAGACAGAAGAATGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745541 86 - 122973662 TAAGCAGTACATGTAACAC--AGTAAA-AATATTTT----AAAGTCAT------AATGAATTCAGGAAGATAAACTATATGTGGAAGACGGAAGAATGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684469 82 - 171630274 taaGCAGTACATGTAACAC--AGTAAA-AATATTTT----AAAGTGAT----------ATTTCAAGAAGATAAACTATATGTGGAAAAAGGGAGACTGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            240940 82 +   1154217 CAAGCAGTACATGTAACAC--AGTAAA-AATATTTT----AAAGTCGT----------GTTTCAAGAACATAAACTATATGTGGAAAAAGGAAGAAGGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14058058 82 +  15232693 TAAGCAGTACATGTAACAC--AGTAAA-AATATTTT----AAAGTCAT----------ACTTCAAGAAGATAAACTATATGTGGAAAAAAGAAGAATGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307721 80 +    446445 TAAGCAGTACATGTA--AC--AGTAAA-AATATTTT----AAAGTCTT----------ATTTCAAGAAGATAAATTCTATGTGGAAAAAGGAAGAATGT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4503333 89 + 123392446 TAAGCAATAAATGCAACACAGAGTAAAGAATATTTT----AAAGTCAT------AATGATTTAAAGAAGAGAAACTGTATGTGGAAGAAAAAAGAATGT
i micMur3.chr6             I 4 I 913
s otoGar3.GL873550          15360809 80 -  18854210 TGAGCAATACATACAACACATAGTAAA-AATATGTT------AGTTAT------AATGATTTGA-----AGAAACTGTATGTGAAAGAAAAAGAACTT-
i otoGar3.GL873550         C 0 I 7
s canFam3.chr12             70409409 84 -  72498081 TAAGCAATAAATACAACACATAGTAAA-AATATTTT----AAAGCCAT------AATAAATTAAAGGAGAGAAACTGTA----GAAGAAGAAAGAATAT
i canFam3.chr12            I 4 C 0
s dasNov3.JH569424            514498 93 +    935526 TAAGCAATAACTGCAACAT-----AAA-TATATTTTATTTAAAGTCATAGTGATAGTGAATTAAAGAAGAGAAATTTGATGTGGAAGAAGATAGACTGA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      168559 852 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=242862.000000
s hg38.chr6_KI270758v1_alt     62173  95 +     76752 CAAC-----AAGACTTTTGGAA----A-------GAATGTTATGAAGTGAG-AA-GACGAAGTCCTGTCAGTGACGCTCTGCTGCTCTCCAGGATGGCAGACGT-------CAGAGGCAT
s panTro5.chr6             142759742  95 - 175400573 CAAC-----AAGACTTTTGGAA----A-------GAATGTTATGAAGTGAG-AA-GACGAAGGCCTGCCAGTGATGCTCTGCTGCTCTCCAGGATGGCCGACGT-------CAGAGGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140907393  95 - 173848474 CAAC-----AAGACTTTTGGAA----A-------GAATGTTATGAAGTGAG-AA-GACGAAGGCCTGCCAGTGATGCTCTGCTGCTCTCCAGGATGGCCGACGT-------CAGAGGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431632  95 +   2807050 CAAC-----AAGACTTTTGGAA----A-------GAATGTTATGAAGTGAG-AA-GACGAAGACCTGCTAGTGACGCTCTGCTGCTCTCCAGGATGGCAGACGT-------CAGAGGCAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745627  95 - 122973662 CAAC-----AAGACTTTTGGAA----A-------GAATGTTATGAAGTGAG-AA-GACGAATGCCTGCCAGTGACGCTCTGCTGCTCTCCAGGATGGCAGACGT-------CAGGGGCAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684551  99 - 171630274 CAAC-GAGAAAGACTCTTGGAA----A-------GAATGTTTTGAAGTGAG-AA-GAAGAATGCCTGCCAGTGGCACTTGG-GGCTTTCCAGGATGGT-GACGCCA-----CACAGGCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            241022  99 +   1154217 CAAC-GAGAAAGACCCTTGGAA----A-------GAATGTTTTGAGGTGAG-AA-GAAGAATGCCTGCCGGTGGCACTC-T-GGCTTCCCAGGACAGCAGACCCCA-----CACAGGCAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14058140 100 +  15232693 CAAC-GAGAAAGACCCTTGGAA----A-------GGATGTTTCGAGGTGAG-AA-GGAGAATGCCTGCCAGTGGCACTCTG-GGCTTTCCAGGATGGCAGACGGCA-----CACAGGCAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307801  99 +    446445 CAAC-GAGAAAGACCCTTGGAA----A-------GAGTGTTTTGAGGTGAG-AA-GAAG-ACGCCTGCTGGTGGCACTCTG-GGCTTTCCAGGATGGCAGACGGCA-----CACAGGCAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15360896 101 -  18854210 AAAA-GAGAAAGATTTCTAGAGTCTTA-------AAATCTTATGAAATGAGAAA-GAGGAATACACGCCAACGACACTCTT----------GGGGCGCTGGCCCCATATACCAGAGGTAT
i otoGar3.GL873550         I 7 I 42
s canFam3.chr12             70409493 102 -  72498081 GGAA-AAGAAAGAC--TTGGAA----AAGTCTTGAAATCTTCTGAAGTGAG-AATTAGGAATTCCTATTAATGACACT--GCTGCTTTCTAGGA-GGTAGCCAT-------GATAGTCAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            514591  95 +    935526 -AATTAAGAGAGCCTTTTGAAA----A-------GTAAAATATCATGTGAG-GA------ATTCCAGAAAATGATACTCTGCTGCTTTCTAGGATAAAACATTT-G-----CAGAGTAAT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4503422 913 + 123392446 I
e proCoq1.NW_012150019v1      168559 852 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=78041.000000
s hg38.chr6_KI270758v1_alt     62268 29 +     76752 CGCGGTCCTATGCGGATCACTCATGAACA
s panTro5.chr6             142759837 29 - 175400573 CACAGTCCTGTGAGGATCACTCATGAACA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140907488 29 - 173848474 CACAGTCCTGTGAGGATCACTCATGAACA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431727 29 +   2807050 CGCGGTCCCATGCGGATCACTCATGAACA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745722 29 - 122973662 CGCGGTCCCGTGCGGATCACTCATGAACT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684650 29 - 171630274 CCAGGTCCTGTGTGGATCACTCACGTACA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            241121 27 +   1154217 CGCAGTCC--TGTGGATCACTCACGTACA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14058240 27 +  15232693 CGCGGTCC--TGTGGATCACTCACGTGCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307900 27 +    446445 CGCAGTCC--TGTGGATCACTCACGTACA
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70409595 29 -  72498081 TACTGTCCTTCGAAAATCACTCATCTATC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            514686 29 +    935526 CATTGCCCTTTGAAGAGCATTCATCTACA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4503422 913 + 123392446 I
e proCoq1.NW_012150019v1      168559 852 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15360997 42 -  18854210 I

a score=318783.000000
s hg38.chr6_KI270758v1_alt     62297 116 +     76752 GCACTCTGGACTTGCTCTTCTGGGCCATCAT---TTTTTTTTTCTA-TTTTTAAATTCATAAATTT------------------------------------------------------AAAC--------------------------------------------------------------------------------------------ACATAA-----------ATGTTAGAAA------------------------CTACACATTATTCTTCCACAAATGTTTACACATT
s panTro5.chr6             142759866 116 - 175400573 GCAGTCTGGACTTGCTCTTCTGGGCCATCAT---TTTTTTTTTCTA-TTTTTAAACTCATAAATTT------------------------------------------------------AAAC--------------------------------------------------------------------------------------------ACATAA-----------ATGTTAGAAA------------------------CTACACATTATTCTTCCACAAATGTTTGCACATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140907517 114 - 173848474 GCAGTCTGGACTTGCTCTTCTGGGCCATCA-----TTTTTTTTCTA-TTTTTAAACTCATAAATTT------------------------------------------------------AAAC--------------------------------------------------------------------------------------------ACATAA-----------ATGTTAGAAA------------------------CTACACATTATTCTTCCACAAATGTTTGCACATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431756 115 +   2807050 GCACTCTGAACTTGCTCTTCTGGGCCATCA----TTTTTTTTTCTA-TTTTTAAACTCATAAATTT------------------------------------------------------AAAC--------------------------------------------------------------------------------------------ACATAA-----------ATGTTAGAAA------------------------CTACACATTATTCTTCCACAAATGTTTACACATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745751 116 - 122973662 GCACTCTGGACTTGCTCTTCTGGAACATCAT---TTTTTTTTTCTA-TTTTTAAACTCATAAATTT------------------------------------------------------AAAC--------------------------------------------------------------------------------------------ACATAA-----------ATGTTAGAAA------------------------CTACACATTATTCTTCCACAAATGTTTACACATT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684679 115 - 171630274 GCACTCTGGACTTGCTCTTCTGGGCCATCGT--ATTTTTTTTTCTA-TTTTTAAACTCATAAATTT------------------------------------------------------AAAC--------------------------------------------------------------------------------------------ACATGA-----------ATGTTGGAAA------------------------CTATGCCTTCTTCTTCCCCAAAGG--TACACATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            241148 113 +   1154217 GCACTCTGGACTTGCTCTTCTGGGCCATC----ATTTTTTATTCTA-TTTTTAAACTCATAAATTT------------------------------------------------------AAAC--------------------------------------------------------------------------------------------TCATAA-----------ATGTTGGAAA------------------------CTCTGCCTTCTTCTTCCACAAATG--TACACATT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14058267 114 +  15232693 GCACTCTGGACTTGCTGTTCTGGGCCATTGT--ATTTTTT-TTCTA-TTTTTAAATTCATAAATTT------------------------------------------------------AAAC--------------------------------------------------------------------------------------------ACATAA-----------ATGGTGGAAA------------------------CTATGCCTTCTTCTTCCACAAATG--TACACATT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      307927 115 +    446445 GCACTCTGGACTTGCTCTTCTGGGCCATCGT--GGGTTTTTTTCTA-TTTTTAAACTCATAAATTT------------------------------------------------------AAAC--------------------------------------------------------------------------------------------ACATAA-----------ATGTTGGAAA------------------------CTATACCTCCTTCTTCCACAAATG--TATACATT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15361039 298 -  18854210 GCACTCTGGAGTTGCtattttaaatcaaaaaa-aattttttttaCA-TTTCTGAACTC-TAAGTTTGTGTTTTAAACTATCgtagatcctctgtaagttgaccacccatgaagctgtaacaaactggtcaaggtacagaggtggtcagcataaggaacgaggcccactgtatgattcatacatgtggtgcatgtcaagtctatgaaaattaggtcaacataaggagatggccgatgtagggaggtggtcatctatgaaggttctactCTATGTGTTATTCTTCCACAAGTAATCACACATT
i otoGar3.GL873550         I 42 C 0
s canFam3.chr12             70409624 100 -  72498081 ACATCCTGTAGTGTCTCTTTTGGTTCACTGA---ATTTTTTTCCTATTTTTTAAACTCATATGTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTGAAA------------------------CTA-----TATTCTCCTACGTTTC--TTTGACTT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            514715 109 +    935526 GCATTCTAGAGTTTTTCTCTTGGGTCATATCATATTTTTTTCTCTG-TTTTTCAATTCATAAGTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTGAAA------------------------ATATGTATTATTCTCTCATGAAAACTTACACATT
i dasNov3.JH569424         C 0 I 44
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4503422 913 + 123392446 I
e proCoq1.NW_012150019v1      168559 852 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1575555.000000
s hg38.chr6_KI270758v1_alt     62413 497 +     76752 AATT-----TTAAT-AAACATttttttcaattgtggtaaaatacata---------------------------------------------------------acataaaataaaacttacccttttaaccattttaaagtgtacagttccgtggtattgtgtacg-tgacattgctgtgtgactatcatcatcactttctagttccagaatattttcatcaccctaaatgaaactccatacccattaagcagttactatccat----ttttcaccccctact--ccccagg-------taatcta-ctttctgtccctatgaacttttctattctgaatattttatataaatggaaccataaactat-ctgtg------------tatgtgtatgtgtatgtggcttctttcccttagcctaatatttttagagttcttccatgtcatagcatgtatcagtgcttctttcctttttt----aaaaaaaaattaacagacatta-tttttaagaacagttttagatttataacaaaataaagtggaaaatccagagagctcctagatccctcctctctcccccct--atttccg
s panTro5.chr6             142759982 490 - 175400573 AATT-----TTAAT-AAACATttttttcaattgtggtaaaatacata---------------------------------------------------------acataaaataaaacttacccttt-aaccattttaaagtgtacagttctgtggtattgtgtatg-tgatattgctgtgtgactatcatcatcactttctagttctggaatattttcatcgccctaaacgaaactccatacccattaagcagttactatccat----ttttcaccccctact--ccccagg-------taatcta-ctttctgtccctatgaacttttctattgtgaatattttatataaatggaaccataaactat-ctgtg------------tatgtgtatgtg------gcttctttcccttagcctaatatttttagagttcttccatgtcatagcatgtatcagtgcttctttcctttttt----taaaaaaaattaacagacatta-tttttaagaacagttttagatttataacaaaataaaatggaaaatccagagagctcctagatccctcctctctcccccct--atttctg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140907631 490 - 173848474 AATT-----TTAAT-AAACATttttttcaattgtggtaaaatacata---------------------------------------------------------acataaaataaaacttacccttt-aaccattttaaagtgtacagttctgtggtattgtgtatg-tgacattgctgtgtgactatcatcatcactttctagttctggaatattttcatcgccctaaacgaaactccatacccattaagcagttactatccat----ttttcaccccctact--ccccagg-------taatcta-ctttctgtccctatgaacttttctattgtgaatattttatataaatggaaccataaactat-ctgtg------------tatgtgtatgtg------gcttctttcccttagcctaatatttttagagttcttccatgtcatagcatgtatcagtgcttctttcctttttT----AAAaaaaaattaacagacatta-tttttaagaacaattttagatttataacaaaataaaatggaaaatccagagagctcctagatccctcctctctcccccct--atttctg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2431871 481 +   2807050 AATT-----TTAAT-AAACATttttttcaattgtggtaaaatacata---------------------------------------------------------acataaaataaaacttacccttt-aaccattttaaagtgtac---tctgtggtattgtgtatg-tgacattgctgtgtgaccatcatcatcactttctagttccagaatattttcatcgccctaaacgaaacgccatacccattaagcagttactacccat----ttttcaccccctact--ccccagg-------taatcta-ctttctgtccctatgaacttttctattctgaatattttatataaatggaaccataaactat-ctgtg------------tatgtg------------gcttctttcccttagcctaatatttttagagttcttccatgtcatagcatgtatcagtgcttctttcctttttt----aaaaaaaaattaacagacatta-tttttaagaacagttttagatttataacaaaataaaatggaaaatccagagagctcctagatccctcctctctctcctct--atttcca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45745867 489 - 122973662 AATT-----TTAAT-AAAC-Tttttttgaattgtggtaaaatacata---------------------------------------------------------acacaaaataaaacttacccttttaaccattttaaagtgtacagttctgtggtattgtgtaca-tgatattgctgtgtgaccatcatcatcactttctagttccagaatattttcatcgccctaaaggaaactccatacccactaagcagttactacccat----ttttcaccccctact--ccccagg-------taatcta-ctttctgtccctatgaacttttctattctgagtattttatataaatggaaccataaaa-at-ctgtg------------tatgtgtatgtgtatgtggcttctttcccttagcctaatatttttagagttcttccatgtcatagcatgtatcagtgcttctttcctttttt-----aaaaaaaattaacagacatta------aagaacagttttagatttataacaaaataaaatggaaaatccagagagctccaagatccctcctctcttccccct--atttccg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138684794 558 - 171630274 TATT-----TTATT-AAACAttttttagaattgtggtaaaatacacataacataaaacttttacccttttaaccattttaaagtgtgcaattctggggaaatatacataacataaaacttacccttttaaccattttaaagtgtgcaattccggggtgttttgtatg-ttacattgttgtg---tcatcatcatcactttctagttccagaatattttcatcacccttaaggaaactccatactcatgaagcagttactgcccat----ttttcaccccttact---cccggg-------taatgta-cgttctgtccctatgaacttttctattctgaatattttatataaatggaatcgtaaaatat-ctgtc----tgtgtgtgtatgtgtatatgtttgtggcttctttcacttagcctaatatttttaaagttcttccatgtcatagcatataccagtgcttcattccttt--t----aaaaaaaatttaacagacatta-tttttaagaacagttttagatttatgacaaaatggaaaggaaaatccaggtagctcctatgtccctcctctcactcccatggatatttc
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            241261 497 +   1154217 TATT-----TTATT-AAACATttttttcaattgtggtaaaatac------------------------------------------------------------acagaacataaaacttaccc--ttaaccattttaaagtgtacacttctgtggtattttgtatg-ttacatgattgtgtgatcattatcatcactttctagttccagaatattttcatcaccctaaaggaaactccatactcatgaaacagttactacccat----ttttcacccccgact---cccagg-------taatctg-cgttctgtccctatgaacttttctcttctgaatattttatataaatggaatcataaaatat-ctgtctgtgtgtgtgtgtatgtgtatatgtttgtggcatctttcactcaacctaatatttttaaagttcttccatgtcatagcatgtaccagtccttcattccttt--t----tcaaaaaaattaacagacatta-tttttaagaacagtttgagatttataaccaaataaaatggaaaatccagatag---ctatgtccctcctctcactcccc---atatttc
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14058381 497 +  15232693 TATT-----TTATTAAAACATttttttcaattgtggtaaaatac------------------------------------------------------------acataacataacacttacccttttagccattttaaagtgtacagtactgtggtattttgtatg-ttacattgttgtgta-acatcatcatcactttctagttccagagtattttcatcaccctaaaggaaactccatactcatgaagcagttactgcccat----ttttcaccccctact---cccagg-------taatcta-tgttctgtccctatgaacttttctattctgaatattttatataaatggaatcataaaatat-ctgtc--tgtgtgtgtgtatgtgtatatg-ttgcggcttctttcacttagcctaatatttttaaagttcttccatgtcatagcatgtaccagtgcttcattccttt--------AAaaaaaattaacagacatta-tttttaagaagagttttagatttatgacaaaatggaatggaaaatccagatagctcctatgtccctcctctcactcccc---atatttc
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      308042 498 +    446445 TATT-----TTATT-AAACATttttttcaattgtggtaaaatac------------------------------------------------------------acataagataaaacttacccttttaaccattttaaagtgtacagttctgtggtattttgtaca-tcacactgttgtgtgatcatcgtcatcactttctagctccagaatattttcatcaccctaaaggaaactccatactcatgaagcagttactacccat----ttttcacccctgact---cccagg-------taatcta-cgttctgtccctctgaacctttctgttctgaatattttacataaatgaaatcataaaatat-ctgtc----tgagtgtgtatgtgtatatatttgcggcttctttcacttagcctaatatttttaaagttcttccatgtcatagcatgtaccagtgcttcattccttt-tt----aAAaaaaaaataacagacatta-tttttaagaacagttttagatttatga-aaaatggaatggaaaatccagatagctcctatgcccctcctctcactcccc---atatctc
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15361337 488 -  18854210 TATTATATGTTATT-TAAAATttttttcaattctggtcatat--------------------------------------------------------------gcctaccatagaatttaccattttggccattttaaagtgcacaattcagtggtgtctagtacgtttacaacattgtaggaccatcattacta-----tcattccagaatattttcatcactccaagctaaactccatacctattaatcagttattacccattttattttaacctactactatcccctag-------caatctc-ctatctatctctatgaactttcctactctgggtatttcatataaagggaatcataaaatatcccgtg------------tgtgtg---------------gcttttacttagcacaatgttttcaaagttctttcttcttatagcaaataccagtaattcattcctttCTTTATAAAAaaaaaattaaca---ctta-tttttaagaactgttctaggtttacagcaaaattgtgtggaaaatccagagtgctcccacatccctccactctctcctggcagttttcc
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70409724 463 -  72498081 AGTT-----TTAAA-------TTTTTTCA---GTAgtgaaatat------------------------------------------------------------atataacataaaacc---------catcattttaaagtatacaattcagtggtatatatatct-tcacaatagtgtgcaaccatcatcaaca---tccagttccaggatattac-----tccagaagaaaactccaaact-attaagcagtcactacccat----ttttctcttctcccctgaccctggcaaccattaatctatttttttgtctctatgaatttacttataccagttatttcatataaatagaa-cataaaatat-atgga----t-------tttctgtgtctg------gct--tttcttttaacttaatatttttaaggttcatccatgttgtaccatgtact-gtactttattccttt-tt----------aaattaacaatttttattttttaggagctgttttgggtttattgaaaaatttagtgaaaaatccagagcatttccatatccctcctctctctccccataatttcc-
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4503422 913 + 123392446 I
e proCoq1.NW_012150019v1      168559 852 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            514824  44 +    935526 I

a score=700047.000000
s hg38.chr6_KI270758v1_alt     62910 163 +     76752 ctattattaacatcttacattagtgtggcacatttgttacaacccatgaaagaatagtgacacattattttcaactaaagtccaca------gttttacatta-ggttcactttttgt-ttatataatctctggagtt--taacaaatgATTT-TTACATT---TACATTGATCTAT
s panTro5.chr6             142760472 163 - 175400573 ctattattaacatcttacattagtgtggcacatttgttacagcccatgaaagaatagtgacacattattttcaactaaagtccaca------gttttacatta-ggttcactttttgt-ttatataatctctggagtt--taacaaatgATTT-TTACATT---TACATTGATCTAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908121 163 - 173848474 ctattattaacatcttacattagtgtggcacatttgttacagcccatgaaagaatagtgacacattattttcaactaaagtccaca------gttttacatta-ggttcactttttgt-ttatataatctctggagtt--taacaaatgATTT-TTACATT---TACATTGATCTAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2432352 163 +   2807050 ctattattaacatcttacattagtgtggcacatttgttacaacccatgaaagaatagtgacacattattttcaactaaagtccaca------gttttacatta-ggttcactttttgt-ttatataatctctggagtt--taacaaatgATTT-TTACATT---TACATTGATCTAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45746356 163 - 122973662 ctattattaatatcttacattagcgtgccacatttgttacaacccatgaaagaatagtgacacattattttcaactaaagtccaca------g-tttacatta-ggttcactttttgtattatatgatctctggagtt--taacacatgattt-ttacatt---tatattgatctat
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138685352 163 - 171630274 ccgttactaagatcttccattactgtggcacatttgttacaacccttgaaagaatagtgacacattattttcaactaaagtccaca------g-tttacatta-ggtccattttttgtgttatatagtctctggagtt--taacaaatgATTT-TTACATT---TATAATGATATAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            241758 163 +   1154217 ccgttactaacatcttacattggtctggcacatttgttacaacccttgaaagaatagtgacacattattttcaactaaagtccaca------g-tttacatta-ggttcactttttgtgttatgtagtctctggagtt--taacaaatgATTT-TTACATT---TACATTGATATAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14058878 163 +  15232693 ccattactaacatcttacattagtgtggcacatttgttacaacccttgaaagaacagagacacattattttcaactaaagtccaca------g-tttacatta-ggttcactttttgtgttatatagtctctggagtt--ttacaaacgATTT-TTACATT---TACATTGATATAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      308540 163 +    446445 ccgttactaacatcttacattagtgtggcacatttgttacaacccttgaaagaatggagacacattattttcaactaaagtccaca------g-tttacatta-ggttcactttttgtgttatatggtccctggagtt--taacaaatgATTT-TTACATT---TACATTGATATAT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      169411 163 +   1371726 ctattattaatgtttcacgttagtgtggtacatttgttacaactgttgaacaaatattgatacattatttccaacaaaagcccatg------g-ctgacattatggttccctttttgtgttgtacaatctatggcgtt--taacaaatgATTT-GTACA-T---TACATTGATATAC
i proCoq1.NW_012150019v1   I 852 I 1
s otoGar3.GL873550          15361825 165 -  18854210 ttattattgacatctcgtgttagtgtggtacattttttgcaactgatgaaccaatattgatacattattttcaataaaagttcata------g-tttacattagggttcactctttcagttgtccattctatggaatttataacaaatgATTT-ACACA-T---TATATTGATATAC
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70410187 169 -  72498081 ----tatttacgccttgccttggtatggtacatttattccaacagatgaaccaatactgatgcattattttcaactataatctctatataggg-tccatattaaggttcactttttgt-gtgtacattctgtgaggtt--tgacaaatgATTTACCACTTTTGGTACATTAATATAC
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4503422 913 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            514824  44 +    935526 I

a score=3840.000000
s hg38.chr6_KI270758v1_alt     63073  1 +     76752 -----------C
s panTro5.chr6             142760635  1 - 175400573 -----------C
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908284  1 - 173848474 -----------C
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2432515  1 +   2807050 -----------C
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45746519  1 - 122973662 -----------c
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138685515  1 - 171630274 -----------C
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            241921  1 +   1154217 -----------C
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059041  1 +  15232693 -----------C
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      308703  1 +    446445 -----------C
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4504335  1 + 123392446 -----------C
i micMur3.chr6             I 913 C 0
s proCoq1.NW_012150019v1      169575  1 +   1371726 -----------C
i proCoq1.NW_012150019v1   I 1 C 0
s otoGar3.GL873550          15361991  1 -  18854210 -----------C
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70410356 12 -  72498081 CCTTATATGTCC
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e dasNov3.JH569424            514824 44 +    935526 I

a score=1193696.000000
s hg38.chr6_KI270758v1_alt     63074 215 +     76752 TTTATATTTATGAAGAC---------TTAAATTTATTAGTAAATATAC-------TAGGTTTACCTGAAAATATTTT-----------------AACAC-------tattttgatttaatgtaattaaaaataatttaTTGCACAACAT------CTAAAGGTTAACTATTATTTTTCACTCACTTTTGAGTCTTCCTTCCTAGTGAATGTAGCTCTTTGCTTGTTAGTC---TGTGCTTGTGAAGGCCCTATGAATAACTATA
s panTro5.chr6             142760636 215 - 175400573 TTTATATTTATGAAGAC---------TTAAATTTATTAGTAAATATAC-------TAGGTTTACCTGAAAATATGTT-----------------AACAC-------tattttgatttaatgtaattaaaaataatttaTTGCACAACAT------CTAAAGGTTAACTATTATTTTTCACTTACTTTTGAGTCTTCCTTCCTAGTGAATGTAGCTCTTTGCTTGTTAGTC---TGTGCTTGTGAAGGCCCTATGAATAAATATA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908285 215 - 173848474 TTTATATTTATGAAGAC---------TTAAATTTATTAGTAAATATAC-------TAGGTTTACCTGAAAATATGTT-----------------AACAC-------tattttgatttaatgtaattaaaaataatttaTTGCACAACAT------CTAAAGGTTAACTATTATTTTTCACTTACTTTTGAGTCTTCCTTCCTAGTGAATGTAGCTCTTTGCTTGTTAGTC---TGTGCTTGTGAAGGCCCTATGAATAAATATA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2432516 215 +   2807050 TTTATATTTATGAAGAC---------TTAAATTTATTAGTAAATATAC-------TAGGTTTACCTGAAAATATGTT-----------------AACAC-------TATTTTGATTTAATGTAATTAAAAATAACTTATTGCACAACAT------CTAAAGGTTAACTATTATTTTTCACTTACTTTTGAGTCTTCCTTCCTAGTGAATGTAGCTCTTTGCTTGTTAGTC---TGTGCTTGTGAAGGCCCTATGAATAAATATA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45746520 215 - 122973662 tttatatttatGAAGAC---------TTAAATTTATTAGTAAATATAC-------TAGGTTTACCTGAAAAtatttt-----------------aacat-------tattttgatttaatgtaattaaaaataatttaTTGCACAACAT------CTAAAGGTTAACTATTACTTTTCACTTACTTTTGAGTCTTCCTTCCTAGTGAATGTAGCTCTTTGCTTGTTAGTC---TGTGCTCGTGAAGGCCCTATGAATAAATATA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138685516 209 - 171630274 ------TTTATGAAGAC---------TTAAATTTATTAGTAAATGTAT-------TAGGTTTATCTGaaaatatttt-----------------aacat-------tattttgatttaatgtaatttaaaataatttattGTACAACAT------CTAAAGGTTAACTATTATTTTTCAGTTACTTTTGAGTTTTCTTTCCTAGTCAATGTAGCTCTTTGCTTGTTAGTC---TGTGCTTGTGAGAACCCTATGAATAAATAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            241922 210 +   1154217 ------TTTATGAAGAC---------TTAAATTTATTAGTAAATATAT-------AAGGTTTACTTGAAAACatttt----------------aaacat-------tattttgatttaatgtaatttaaaataatttattGCACAACAT------CTAAAGGTTAACTATTATTTTTCACTTACTTTTGAGTCTTCTTTCCTAGTTAATGTAGCTCTTTGCTTGTTAGTC---TGTGCTTGTGAAGGCCCTGTGAATAAATAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059042 218 +  15232693 ------TTTATGAAGACTTAAATTTATTAAATTTATTAGTAAATATAT-------TAGGTTTATCTGAAAATATTTT-----------------AACAT-------TATTTTGATCTAATGTAATTTAAAATAACTTATTGCACAACAT------CTAAAGGTTAACTATTATTTTTCAGTTACTTTTGAGTCTTCTTTCCTAGTCAGTGTAGCTCTTTGCTTGTTAGTC---TGTGCTTGTGAAGGCCCTATGGATAAATAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      308704 210 +    446445 ------TTTATGAAGAC---------AAATTTTTATTAGTAAATATAT-------TAGGTTTATCTGAAAATATTtt----------------taacat-------tattttgatttaatgtaatttaaaataatttaTTGCACAACAT------CTAAAGGTTAACTATTATTTTTCAGTTACTTTTGAGTCTTCTTTCCTAGTCAGTGTAGCTCTTTGCTTGTTAGTC---TGTGCTTGTGAAGGCCCTATGAATAAATAAA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4504336 218 + 123392446 TTTATATTTTTGAAAAC---------TTAAATTTATTAGTAAATATGC-------TAGTTTTTCTGGAAAATATTTT-----------------AACAT--TACTCTATTTTGATTTAGTGCAAT--AAAATGATTTATTTAATAATGC------TTGAAGGTTAACTGTTATTTTTTGTTTATTTTTGAGTCTTCCTTCCCAGTCAATCTTGTTCTTTGCTTGTTAGTC---TATACTTGTGCAAGCCCTATAAATAAATATA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      169576 216 +   1371726 TTTATATTTTCGAAAAC---------TTAAATATATTAGTGAATATGC-------TAGTTTTGCTTGAAAATATTTT-----------------GATGT--TACTCTATTTTGATTTAATGTAAT--AAAATGATTTATTTAACAATGC------TTGAAGGTTAAC--TTATTTTTCGTTTATTTTTGAGTCTTCCTTCCCAGTCAGTCTAGTTCTTTGCTTTTTAGTC---TATGCTTGTGCAAACCCTGTAAATAAACATA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15361992 216 -  18854210 TTTACTACTTTGAAAAC---------TTCAGTT--TCAGTAAGTATGC-------TAGCTTTGCTTGAAAACATTTT-----------------AATGT--TACTCTATTTTGATTTAATGTAAT--AAAATGATTTAATTAATAATGC------CTGAAGGTTAGCTGTTATTTTTCATTTATTTTTGAGTCTTCCTTCCCAATCAATCTAGCTCTTTGCTTATTAGTC---TATACTTGTACAAGCCCTATAAGTATATATA
i otoGar3.GL873550         C 0 I 511
s canFam3.chr12             70410368 231 -  72498081 TTTATATTTTTGAAG-----------TCAAATTTATTAGTAAATGTGT-------TGACTTTGCCttaaaatatttttttcttaaaatatttttaatGT--TATTCTATTTTGATTTAATG-AACTAAAAATGTTTTATTTGATAAAAT------CTGAAGGTTAACTACCTCCCCTC------TTTTTTGTCTTCCTTCATGATCAGTCTAACTTTTTGCATGTTAGTTTTATGTGCTTGTGTAGGCCCAATATGTAAATATA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            514868 231 +    935526 TTTATATTTTTGGAGAC---------TTAAATTTACTAGTAAATATACTAGCTAGTAGCTTCGCCTGAAAACATTTT----------------TGACATGTTACTTTATATTGATTTAATGTAATTGGAAGTGCTTTATTTTATAATGTTGACTCTGAAAAAATAAAAATCACTTTTC----ATTTTTGAGTCTACCTC----ATCAGTCTAGCTCTTTGTTTTTTAGTCCTGTGTGTTTGTGCAAGCTCTATTTATAAATAAA
i dasNov3.JH569424         I 44 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=186815.000000
s hg38.chr6_KI270758v1_alt     63289 43 +     76752 TTCACTTTCCAGGGAGAAAGTCTCAAGAAAA--TTGGTTTTTATC
s panTro5.chr6             142760851 43 - 175400573 TTCACTTTCCAGGGAGAAAGTCTCAAGAAAA--TTGGTTTTTATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908500 43 - 173848474 TTCACTTTCCAGGGAGAAAGTCTCAAGAAAA--TTGGTTTTTATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2432731 43 +   2807050 TTCACTTTCCAGGGAGAAAGTCTCAAGAAAA--TTGGTTTTTATC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45746735 43 - 122973662 TCCACTTTCCAGGGAGAAAGTCTCACGAAAA--TTGGTTTTTATC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138685725 42 - 171630274 TTCATTTTCC-GGGGGAAAGTCTCATGAAAA--TTGTTTTTTATC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242132 42 +   1154217 TTCATTTTCC-GGGGAAAAGTCTCATGAAAA--TTGTTTTTTATC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059260 43 +  15232693 TTCATTTTCCAGGGGGAAAGTCTCATGAAAA--TTGTTTTTTATC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      308914 43 +    446445 TTCATTTTCCATGGGGAAAGTCTCATGAAAA--TTGTTTTTTATC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4504554 44 + 123392446 TAGGCTTTCCTGGGAGAAAGTCTCATAAGAA-TTTATTTTTAATC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      169792 45 +   1371726 TAGGCTTTCCTGGGAGAAAGTCTCATAAGAATTTTATTTTTAATC
i proCoq1.NW_012150019v1   C 0 C 0
s canFam3.chr12             70410599 42 -  72498081 TAGGTTTTCC-CTAGGAAGGTCTCAAAAAAA--ATTCTGTTTATC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            515099 41 +    935526 TTGGCTTTCCTTGAGGAAAGTCTCATGAAAT----GTCTCTTATC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15362208 511 -  18854210 I

a score=505461.000000
s hg38.chr6_KI270758v1_alt     63332 89 +     76752 AGTCACATTCTCTCACTGTATATT-AGAAAA------CATACTTTCCTATGGCTTCCCAAATTGGTGATTAATTTACTTTCTGAGTTCCAGTTCCA
s panTro5.chr6             142760894 89 - 175400573 AGTCACATTCTCTCACTGTATATT-AGAAAA------CATACTTTCCTATAGCTTCCCAAATTGGTGATTAATGTACTTTCTGAGTTCCAGTTCCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908543 89 - 173848474 AGTCACATTCTCTCACTGTATATT-AGAAAA------CATACTTTCCTATAGCTTCCCAAATTGGTGATTAATGTACTTTCTGAGTTCCAGTTCCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2432774 89 +   2807050 AGTCACATTCTCTCACTGTATATT-AGAAAA------CATACTTTCCTATAGCTTCCCAAATTGGTGATTAATGTACTTTCTGAGTTCCAGTTCCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45746778 89 - 122973662 AGTCACATTCTCTCACTGTATATT-AGAAAA------CATACTTTCCTATGGCTTTCCAAATTGGTGATTAATTTACTTTCTGAGTTCCAGTTCCA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138685767 90 - 171630274 AGTCATGTTCTCTCACTGTATATTAAAAAAA------AATACTTTCCTATAGCTTCCGAAATTGGTGATTAATTTACCTTCTGAGTTCCGATTCCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242174 89 +   1154217 AGTCACGTTCTCTCACTGTATATT-AAAAAA------CATACTTTCCTATAGCTTCCGAAATTGGTGATTAATTTACCTTCTGAGTTCCAATTCCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059303 84 +  15232693 AGTCACGTTCTCTCACTGTATATT-AAAAAA------CATACTTTCCTATAGCTTCTGAAATTGGTGA-----TTACTTTCTGAGTTCCAATTCCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      308957 84 +    446445 AGGCATGTTCTCTCACTGTATATT-AAAAAA------CATACTTTCCTATAGTTTCCAAAATTGGTGA-----TTACTTTCCAAGTTCCAATTCCA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4504598 89 + 123392446 AGTCACATTCTGTCAGTATATACT-AAGAAA------CATATTTCCCTGTAGCTTCCCAAACTGGTGATTAATTTAGTTTTTCAGTTCCAATTCCA
i micMur3.chr6             C 0 I 174
s proCoq1.NW_012150019v1      169837 89 +   1371726 AGTCGCATTCTGTCAGAATATACT-AAGAAA------CATATTTTCCTGTGGCTTCCCAAACTGGTGATTAATTTAGTTTTTCAGTTCCAATTCCG
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15362719 95 -  18854210 agtgagactctgtctcaaaacaac-aaaaaaaaCCCCCATACTTTCCTGTAGCTTTTCAAATCGGTGATTAATTTACTTTCTCAGTTCCAATTCCA
i otoGar3.GL873550         I 511 C 0
s canFam3.chr12             70410641 89 -  72498081 AGTAAAATCCTTTCACTATGTATT-AAGAAA------TATGTTTTTCTTTAGCTCACCAAATAGGGGATTAATTTAATTTCTCAGTTCCAATGTCA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            515140 77 +    935526 AGTCATATCCTTTTACTATATATT-AAGAAA------TATA-----------CTTCCCAAATTGGAAATTAATTTACTTTCTCAG-TCCAATTCCA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=40956.000000
s hg38.chr6_KI270758v1_alt     63421 6 +     76752 GTTAGA
s panTro5.chr6             142760983 6 - 175400573 GTTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908632 6 - 173848474 GTTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2432863 6 +   2807050 GTTAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45746867 6 - 122973662 GTTAGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138685857 6 - 171630274 GTTAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242263 6 +   1154217 GTTGGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059387 6 +  15232693 GTTAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309041 6 +    446445 GTTAGA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      169926 6 +   1371726 GTTAGA
i proCoq1.NW_012150019v1   C 0 I 167
s otoGar3.GL873550          15362814 6 -  18854210 GTTAGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70410730 6 -  72498081 ATTAGA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            515217 6 +    935526 GTTAGA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4504687 174 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=54279.000000
s hg38.chr6_KI270758v1_alt     63427 21 +     76752 AAAGCCACAGGAAGGAG----------------------------------------AGGG
s panTro5.chr6             142760989 21 - 175400573 AAAGCCACAGGAAGGAG----------------------------------------AGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908638 21 - 173848474 AAAGCCACAGGAAGGAG----------------------------------------AGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2432869 21 +   2807050 AAAGCCACAGGAAGGAG----------------------------------------AGGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45746873 21 - 122973662 AAAGCCACAGGAAGGAG----------------------------------------AGGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138685863 16 - 171630274 AAAGCCACGGGAAGGA---------------------------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242269 21 +   1154217 AAAGCCACAGGAAGGAG----------------------------------------AGGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059393 21 +  15232693 AAAGCCACAGGAAGGAG----------------------------------------AGGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309047 21 +    446445 AAAGCCACAGGAAGGAG----------------------------------------AGGG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15362820 18 -  18854210 AAAACCTCATAAAGAA-------------------------------------------GG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70410736 61 -  72498081 AAAACCTTGGAGGggagtgcctgggtggctcagcggtttggtgcctacctttggcccaggg
i canFam3.chr12            C 0 I 136
s dasNov3.JH569424            515223 20 +    935526 AAAGCTGCAGGGAAGAA----------------------------------------TAA-
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4504687 174 + 123392446 I
e proCoq1.NW_012150019v1      169932 167 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=614728.000000
s hg38.chr6_KI270758v1_alt     63448 161 +     76752 GTTGGTGGCGTGA-------GGATGATGCCCCAGTCACTG--GA--AGTCCCTGTGGCTGTTGGGTGGGTAATCGGGTTGGTGCCTC-AGG-ATGCAGTTCCTT-CCCCTC--CTGGTGTGTAGACAGCTGGGTGTAGTCAT--TAAAGCGGGGCCACTCTCAGAATAGATGTGCAGAT
s panTro5.chr6             142761010 161 - 175400573 GTTGGTGGCGTGA-------GGATGATGCCCCAGTCACTG--GA--AGTCCCTGTGGCTGTTGGGTGGGTAATCGGGTTGGTGCCTC-AGG-ATGCAGTTCCCT-CCCCTC--CTGGTGTGTAGACAGCTGGGTGTAGTCAT--TAAAGCGGGGCCACTCTCAGAATAGATGTGCAGAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908659 161 - 173848474 GTTGGTGGCGTGA-------GGATGATGCCCCAGTCACTG--GA--AGTCCCTGTGGCTGTTGGGTGGGTAATCGGGTTGGTGCCTC-AGG-ATGCAGTTCCCT-CCCCTC--CTGGTGTGTAGACAGCTGGGTGTAGTCAT--TAAAGCGGGGCCACTCTCAGAATAGATGTGCAGAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2432890 161 +   2807050 GTTGGTGGCGTGA-------GGATGATGCCCCAGTCACTG--GA--AGTCCCTGTGGCTGTTGGGTGGGTAATCAGGTTGGTGCCTC-AGG-ATGCAGTTCCCT-CCCTTC--CTGGTGTGTAGACAGCTGGGTGTAGTCAT--TAAAGCAGGGCCACTCTCAGAATAGATGTGCAGAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45746894 161 - 122973662 GTTGGGGGCGTGA-------GGATGATGCCCCAGTCACTG--GA--AGTCCCTGTGGCTGATGGGTGGGTAATTGGGTTGGTGCCTC-AGG-ATGCAGTTCCCT-CCCCTC--CTGGCATATAGATAGCTGGGTGTAGTCAT--TAAAGCGGGGCCACTCTCAGAATAGATGTGCAGAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138685879 146 - 171630274 ---------------------GATGATGCCCCAGTTGCTG--GA--AGCCCCTATGGCTGATGGGTGGGTCATTGGG-GGGTGCCTC-AGG-ATGCAGTCCCCT-CCCCTC--CTGGTGTGTAGACAGCTGGGTGCAGTCAT--TAAAGCAGAGCCTCTCTCAGAATAGATGTCCAGAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242290 161 +   1154217 GTTGGTGGCGTGA-------GGATGATGCCCCAGTTACCG--GA--AGTCCCTATGGCTGATGGGTGGGTAATTGGGCTGGTGCCTC-AGG-ATGCAGTTCCCT-CCCCTC--CTGGTGTATAGACACCTGGGTGTAGTCAT--TAAAGCGGAGCCGCTCTCAGATTAGATGTCCAGAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059414 161 +  15232693 GTTGGTGGTGTGA-------GGATGATGCCCCAGTCGCTG--GA--AGTCCCTATGGCTGATGGCTGGGTAATTGGGCTGGTGCCTC-AGG-ATGCAGTTCCCC-CCGCTC--CTGGTGTATAGACACCTGGGTGTAGTCAT--TAAAGCTGAGCCGCTCTCAGAATAGATGTCCAGAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309068 161 +    446445 GTTGGTGGGGTGA-------GGATGATGCCCCAGTTGCTG--GA--AGTCCCCGTGGCTGATGGGTGGGTAATTGGGCTGGTGCCTC-AGG-ATGCAGTTCCCT-CCCCTC--CTGGTGTACAGACAGCTGGGTGTAGTCAT--TAAAGCAGAGCCGCTCTCAGGATAGATGTCCACAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15362838 154 -  18854210 GCTGGTGGCTTAA-------GGATGACACCCT-----------T--AGTCACTGTGGCTGATGGATGAGTGACTGGACTGGTCTATC-AGGCAAGTGGTTCCAT-CTGATC--CTGATATGTAGACAGCTGGATGTAGACATG-TAAAGCATGGTGAGGGTCAGAACAGATATGTGGAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70410933 166 -  72498081 GTTGGTGGCTTGA-------TCAAGACACTCTAATCACTGATGC--AGTCACTATGCCTGATGGATGAGTGACTGGATTGGCCCATCAAAG-ATCCAGCTCCCTGTCACTC--CTAATGCATAGGGAGCTGGTTGCAGTCATG-CAAAGCATGGTGACTCTCAGAAGAGATGTATAGAT
i canFam3.chr12            I 136 C 0
s dasNov3.JH569424            515243 171 +    935526 --TGATTGCGTAACTCCCCTCTCCTCTGCCCCTATCATTG--GAACAGTTATTGTGGCCAGTGGATGAGTAACAGGCTTGAC-CCAC-AGG-CCTCAGGTTCTC-TCCCTCTGCTGATGTATAGACAGCAGGTAGTAGTCATGTAAAAAGATGGCACCTCTCTGAATAGATGTAGAGAT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4504687 174 + 123392446 I
e proCoq1.NW_012150019v1      169932 167 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=7098.000000
s hg38.chr6_KI270758v1_alt     63609 1 +     76752 T
s panTro5.chr6             142761171 1 - 175400573 T
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908820 1 - 173848474 T
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433051 1 +   2807050 T
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747055 1 - 122973662 T
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686025 1 - 171630274 T
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242451 1 +   1154217 T
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059575 1 +  15232693 T
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309229 1 +    446445 T
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      170099 1 +   1371726 T
i proCoq1.NW_012150019v1   I 167 C 0
s otoGar3.GL873550          15362992 1 -  18854210 T
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70411099 1 -  72498081 T
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            515414 1 +    935526 T
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4504687 174 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=308718.000000
s hg38.chr6_KI270758v1_alt     63610 48 +     76752 -GGCTGGATCTCAGTTTCAGAGAGAGGACAG--------------GAGGAAGCCACAGAGACT
s panTro5.chr6             142761172 48 - 175400573 -GGCTGGATCTCAGTTTCAGGGAGAGGACAG--------------GAGGAAGCCACAGAGACT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908821 48 - 173848474 -GGCTGGATCTCAGTTTCAGGGAGAGGACAG--------------GAGGAAGCCACAGAGACT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433052 48 +   2807050 -GGCTGAATCTCAGTTTCAGGGAGAGGACAG--------------GAGGAAGCCACAGAGACT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747056 48 - 122973662 -GGCTGGATCTCAGTTTCAGGGAGAGGACAG--------------GAGGAAGCCACAGAGACT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686026 48 - 171630274 -GGCTGGATCTCAGTTTCAGGGAGAGGACGG--------------GAGGAAGCCACAGAGAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242452 62 +   1154217 -GGCTGGATCTCAGTTTCAGGGAGAGAATGGGGCGGGGGGGAGGTGGGGAAGCCACAGAGACT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059576 48 +  15232693 -GGCTGGATCTCAGTTTCAGGGAGAGGACGG--------------GAGGAAGCCACAGAGACT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309230 48 +    446445 -GGCTGGATCTCAGTTTCAGGGAGAGGACGG--------------GAAGAAGCCACAGAGACT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4504861 48 + 123392446 -GGCTGGATCTCAGCTTCAGGGGGAGGACAG--------------GAGGAAGCCAGAGAGACT
i micMur3.chr6             I 174 C 0
s proCoq1.NW_012150019v1      170100 48 +   1371726 -GGCTGGATCTCAGTTTCAGGGGGAGGACAG--------------GAGGAAACCAGAGAGACT
i proCoq1.NW_012150019v1   C 0 I 117
s otoGar3.GL873550          15362993 48 -  18854210 -GGCTGGATCTTGGTGTCAGGGAGAGGATAG--------------GAGGAAGCCACAGAGTTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70411100 46 -  72498081 -GGATGCAGCTCAGTTTAAAGGAAAGGACTA--------------GAGGAAACC--AGAGACC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            515415 48 +    935526 GGAATGGATCACA-TTTCAGGAAGAAGACTG--------------AAGGAAACCAGAAAAAAT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=30700.000000
s hg38.chr6_KI270758v1_alt     63658 5 +     76752 GAATT
s panTro5.chr6             142761220 5 - 175400573 GAAtt
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140908869 5 - 173848474 GAAtt
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433100 5 +   2807050 GAAtt
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747104 5 - 122973662 AAAtt
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686074 5 - 171630274 AAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242514 5 +   1154217 AAATt
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059624 5 +  15232693 AAATT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309278 5 +    446445 AAATt
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4504909 5 + 123392446 AAATT
i micMur3.chr6             C 0 I 123
s otoGar3.GL873550          15363041 5 -  18854210 AAATT
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70411146 5 -  72498081 AAATT
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            515463 5 +    935526 GAATT
i dasNov3.JH569424         C 0 I 1
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      170148 117 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=423139.000000
s hg38.chr6_KI270758v1_alt     63663 113 +     76752 GTTAA-----CTCCCTG----ACAT--TTTCCTCCTTTGTcagtacaatttaacttccatgaggacagtga---tttttttc--ttttttgtctagccccacaacctgtaaaaa----tgacatacattgatt-
s panTro5.chr6             142761225 113 - 175400573 gttaa-----ctccctg----acat--tttcctcctttgtcagtacaatttaacttccatgaggacagtga---tttttttc--ttttttgtctagctccacaacctgtaaaaa----tgacatatattgatt-
i panTro5.chr6             C 0 I 1
s panPan2.chr6             140908874 113 - 173848474 gttaa-----ctccctg----acat--tttcctcctttgtcagtacaatttaacttccatgaggacagtga---tttttttc--ttttttgtctagctccacaacctgtaaaaa----tgacatatattgatt-
i panPan2.chr6             C 0 I 1
s gorGor5.CYUI01000036v1     2433105 113 +   2807050 gttaa-----ctccctg----acat--tttcctcctttgtcagtacaatttaacttccatgaggacagtga---tttttttc--ttttttgtctagcctcacaacctgtaaaaa----tggcatatattgatt-
i gorGor5.CYUI01000036v1   C 0 I 1
s nomLeu3.chr1a             45747109 112 - 122973662 gttaa-----ctccctg----acat--tttcctcctttgtcagtataatttaacttccaggaggatagtga----tttttcc--ttttttgtctagccccacaacctataaaaa----tgacagatattgatt-
i nomLeu3.chr1a            C 0 I 1
s calJac3.chr4             138686079 116 - 171630274 GTTAA----CCTGCCTG----ACAC--TTTCTTCCTTTGTCAATACAATTTAACTTCCATGAGGACAGTGA-TTTCTTCTTC--TTTTCTGTCTAGCCCCACAACCTATAAAAG----TGACATATATTGATT-
i calJac3.chr4             C 0 I 1
s saiBol1.JH378315            242519 117 +   1154217 gttaa----cctgcctg----acac--tttcctcctttgtcagtacaatttaacttccatgaggacagtaatttttttcttc--ttttttgcctagccccacaagctataaaag----tgacacatattgatt-
i saiBol1.JH378315         C 0 I 1
s cebCap1.NW_016107339v1    14059629 115 +  15232693 GTTAA----CCTGCCTG----ACAT--tttcctcctttgtcagtacaatttaac--ccatgaggacagtgatttttttcttc--ttttttgtctagccctacaatctataaaag----tgacatatattgatt-
i cebCap1.NW_016107339v1   C 0 I 1
s aotNan1.NW_018508875v1      309283 116 +    446445 gttaa----cctgcctg----acat--tttcctcctttgtcagtacaatttaacttccatgaggacagtga-ttttttcttc--ttttttgtctagccccacaacctataaaag----tgacatatattgatt-
i aotNan1.NW_018508875v1   C 0 I 1
s otoGar3.GL873550          15363047 122 -  18854210 GTTAACTTTCCTGTCGG----ACGT--tttccccctttgtcagtatggtataagttccatgaggacagtga-ctttgtgtgcagttgtgtgcgtctccccacaacctagaagag----tgtcatgttttagtg-
i otoGar3.GL873550         I 1 I 1
s canFam3.chr12             70411152 116 -  72498081 GTTAA----CCTCTCTGCAGAActt--tttcctca-ttgttagtagacattaagttcctttagggcagtga----tattttt--gtgtgtgtgtatcatcacaaagtagaagag----tgacatatattagtt-
i canFam3.chr12            I 1 I 1
s dasNov3.JH569424            515469 121 +    935526 GCTAA-----TCCCCTG----GCGTGATTCTTTCATTTGccagtagatgataaattccatgagggtagtga--tgttttttc--cgtttggcatatcctcacaacctagaacagcacttgccatatatttgctg
i dasNov3.JH569424         I 1 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4504914 123 + 123392446 I
e proCoq1.NW_012150019v1      170148 117 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=632913.000000
s hg38.chr6_KI270758v1_alt     63776 113 +     76752 atcaataaacatttgtaaaatgcatgaatTGTCTCATAAAGT-GATATTTATTGAATATCTTACCtgttgaatgtactatgctaaggcctagagatacaatccttaataagaca
s panTro5.chr6             142761339 113 - 175400573 atcaataaacatttgtaaaatgcatgaatTGTCTCATAAAGT-Gatatttattgaatatcttacctgttgaatgcactatgctaaggcctagagatacaatccttaataagaca
i panTro5.chr6             I 1 C 0
s panPan2.chr6             140908988 113 - 173848474 ataaataaacatttgtaaaatgcatgaatTGTCTCATAAAGT-Gatatttattgaatatcttacctgttgaatgcactatgctaaggcctagagatacaatccttaataagaca
i panPan2.chr6             I 1 C 0
s gorGor5.CYUI01000036v1     2433219 113 +   2807050 atcaataaacatttgtaaaatgcatgaatTGTCTCATAAAGT-Gatatttattgaatatcttacctgttgaatgtactatactaaggcctagagatacaatccttaataagaca
i gorGor5.CYUI01000036v1   I 1 C 0
s nomLeu3.chr1a             45747222 113 - 122973662 atcaataaacatttgtaaaatgcatgaatTGTCTCAAAAAGT-Gatatttattgaatatcttacctgttgaatgtactatgctaaggcctagagatacaatccttaataagaca
i nomLeu3.chr1a            I 1 C 0
s calJac3.chr4             138686196 111 - 171630274 ATCGATACACATTTATAAAATGCACGAATGGTTTCATCAAGT-GATATTTGTTGAATATCTTACCTGTTGAGTGTGCTGTGCTGGG--CTACAGATGCAATCCTTAGTGAGACA
i calJac3.chr4             I 1 C 0
s saiBol1.JH378315            242637 113 +   1154217 atcaataaacatttgtaaaatgcacgaatTGTGTCATAAAGT-Gatatttattgaatatcttacctgttgcatgtgctgtgctagggcctggagctgcaatccttaataagacc
i saiBol1.JH378315         I 1 C 0
s cebCap1.NW_016107339v1    14059745 113 +  15232693 atcaataaacatttgtaaaatgcacgaatTGTTTCATAAAGT-GATATTTACTGAATATCTTACCTGTTGAATGTGCTGTGCTAGCGCCTACAGATACAATCCTTAATAGGACA
i cebCap1.NW_016107339v1   I 1 C 0
s aotNan1.NW_018508875v1      309400 113 +    446445 atcaataaacatttgtaaaatgcacgaatTGTTTCATAAAGT-Gatatttattgaatatcttacctgttgaatgtactgtgctagggcctagaaatatgatccttaataagaca
i aotNan1.NW_018508875v1   I 1 C 0
s micMur3.chr6               4505037 114 + 123392446 atcaataaacatttgtAAAACACACGCATCATttcataaagtagatatttattgaatatcttatctgtagaatgcactatgctagggcctagagatacaatccttaataagaca
i micMur3.chr6             I 123 I 21
s proCoq1.NW_012150019v1      170265 114 +   1371726 atcaataaacatttgtAAAACGCACGTGTCATTTCATAAAGTGGatatttattgaatatcttatctatagaacgcaccgtgctagggcctagagatacaatccttaataagacc
i proCoq1.NW_012150019v1   I 117 C 0
s otoGar3.GL873550          15363170 114 -  18854210 atcagtaaacatttgtAAAACACTTGTGTAGTTTTGTGAAGTGGatattctttacacatcttatttgtagaatgcactatagtagggcctggagatacagtcctcaataagaca
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70411269 114 -  72498081 atcaataaacatttatgaaatagaggaatAGATTCATAAATAGGATATTTATTTAATATTTTATCTTTAGAATACCCTGTGCTGGACTGTAGAGATCAAATGCATAGCAAGGCA
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            515590 103 +    935526 atcaataaatttttgtg-aatgCTGGAAT--------AAAATGGATAATGATTGAATACCTTAAGTGTGAAATGCACC-TTCTACACCCTAGAGATACAATG-TTAAAAAAGCA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=163145.000000
s hg38.chr6_KI270758v1_alt     63889 36 +     76752 taattcctgccctcaggTCTTTCTTTT--TTGCAGTGG
s panTro5.chr6             142761452 36 - 175400573 taattcctgccctcaggtctttctttt--ttgcagtgg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909101 36 - 173848474 taattcctgccctcaggtctttctttt--ttgcagtgg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433332 36 +   2807050 taattcctgccctcaggtctttctttt--ttgcagtgg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747335 36 - 122973662 taattccttccctcaggtctttctttt--ttgcagtgg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686307 36 - 171630274 TAATTCCCTCCCTCAGGTCTTTCTTTT--TTGCAGTAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242750 37 +   1154217 tag-tccctccctcaGGTCTTTCTTTTTGTGACAGTAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059858 36 +  15232693 TAATTCCCTCCCTCAGGTCTTTCTTTT--TTGCGGTAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309513 36 +    446445 taattctctccctcaggTCTTTCTTTT--TTGCAGTAG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      170379 36 +   1371726 taattcctgctctcaggcatttcttca--ttctagggg
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15363284 36 -  18854210 taattcctgctgtcagatatttcttca--ttctagggg
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70411383 36 -  72498081 TAATTCCTGCTCTAATATAGTTCTTTA--TTCTAGTTA
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            515693 36 +    935526 TATTTTCTGCCTTTGGGTATTTCTTTA--TTCTAGTGG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4505151 21 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=935390.000000
s hg38.chr6_KI270758v1_alt     63925 167 +     76752 AG----TCACTCTGTTTTTGGAATGTCT------------TATTATACCTTCATAAACTTTACTAAAAATGGGAGTGCCAGAGTAGTCCAGCAATAAAGAATTAATTGATGTAGCCAGATGGTGAATTC---------ACTTTTCCAGAAAGGATAG---------------------GCTACTTGGAGACCCTGCACTACTTATTGATTTAC
s panTro5.chr6             142761488 167 - 175400573 ag----TCACTCTGTTTTTGGAATGTCT------------TATTATACCTTCATAAACTTTACTAAAAATGGGAGTGCCAGAGTAGTCCAGCAATAAAGAATTAATTGATGTAGCCAGGTGGTGAATTC---------ACTTTTCCAGAAAGGATAG---------------------GCTACTTGGAGACCCTGCACTACTTATTGATTTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909137 167 - 173848474 ag----TCACTCTGTTTTTGGAATGTCT------------TATTATACCTTCATAAACTTTACTAAAAATGGGAGTGCCAGAGTAGTCCAGCAATAAAGAATTAATTGATGTAGCCAGGTGGTGAATTC---------ACTTTTCCAGAAAGGATAG---------------------GCTACTTGGAGACCCTGCACTACTTATTGATTTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433368 167 +   2807050 ag----TCACTCTGTTTTTGGAATGTCT------------TATTATACCTTCATAAACTTTACTAAAAATGGGAGTGCCAGAGTAGTCCAGCAATAAAGAATAAATTGATGTAGCCAGGTGGTGAATTC---------ACTTTTCCAGAAAGGATAG---------------------GCTACTTGGAGACCCTGCACTACTTATTGATTTAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747371 167 - 122973662 ag----TCACTCTGTTTTTGGAATGTCT------------TATTATACCTTCATAAACTTTACTAAAAATGGGAGTGCCAGAGTAGTCCAGCAATAAAGAATTAATTGATGTAGCCAGGTGGTGAATTC---------ACTTTTCCAGAAAGGATAG---------------------GCCACTTGGAGACTCTGCACTACTTATTGATTTAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686343 179 - 171630274 AG----TCACTTTGTTTTTGGGATGTCTGTGAAATGGAAAGTTTATACCTGCACAACCTTTACTAAAAGCAGTAGTACCAAAGTAGTCCAGCAATAAAGAATTAATTGATGTAGCCACGTGGTGAATTC---------ACTTTTCCAGAAAGGACAG---------------------GCTACTTGGAGACCCTACACTACTTATTGATTTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242787 179 +   1154217 AG----TCACTTTGTTTTTGGAATGTCTGTGAAATGGAAAGTTTATACCTGCATAAACTTTACTAAAAACCCTAGTACCGAAGTAGTCCAGCAGTAAAGAATTAACTGATGTAGCCACGTGGTGAATTC---------ACTTTTCCAGAAAGGATAG---------------------GCTACTTGGAGACCCTACACTACTTATTGATTTGC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14059894 179 +  15232693 AG----TCACGTTGTTTTTGGAATGTCTGTGAAATGGAAAGTTTATACCTGCATAAACTTTACTAAAAACAGCAGTACCAAAGGAGTCCAGCAATAAAGAATTAATTGATGTAGCCACGTGGTGAATTC---------ACTTTTCCAGAAATGATAG---------------------GCTACTTGGAGACCCTACACTACCTATTGATTTGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309549 179 +    446445 AG----TCACTTTGTTTTTGGAATGTCTGTGAAATGGAAAGTTTACACCTGCATAAGCTTTACTAAAAACAGTAGTACCAAAGTAGTCCAGCAATAAAGAATTAATTGATGTAGGCACGTGGTGAGTTC---------ACTTTTCCAAAAAGGATAG---------------------GCTACTTGGAGACCCTAAACTACTTATTGATTTGC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4505172 166 + 123392446 AG----TTACTTTG-TTTTTGAAAGtct------------tattataccttcataaacttcactgaaaatgggattgccagcgtagtccagtagtaaagaattgattGATGGAGCCAGACTGTGACTTC---------ACTTTGCCAGAAAGTATAG---------------------GCTACTTGGAGACCCTGCCCTGCTTATTGACTTAC
i micMur3.chr6             I 21 I 134
s proCoq1.NW_012150019v1      170415 167 +   1371726 ag----ccaCTTTGTTTTTTGAAAGTCT------------TATCATACCTTCATAAACTTTACTGAAAATGGGATTGTCAGAGTAGTCCAGTAGTAAAGAATTGATTGATGGAGCCAGATTGTGACTTC---------ACTTTGCCAGAAAGTATAG---------------------GCTACTTGGAGACCCTGCCCTGCTTATTGACTTAC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15363320 143 -  18854210 ag----TCACTTTGTTTTTTGAA------------------------------------TAACTGAAAATGGAATTACCAGTGTAGTCCAGCAATAAAGACTTAACTGATGGAGCCAGACTGTGAATTC---------ACTTTGGCAGACAGGACAG---------------------GCTACTTGGAGACCCTGCACCACTTACTGGTCTAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70411419 180 -  72498081 AGTCTTTCTCTTTGTTTTTTGAATGTCT------------TATTATTACCTTATAGAGCTTACTCAGAATGGGATTGCCAGAGCAGTCCAGCAGTAAATATTTAATTAATGGAGTCAAGTGGTGAGTTCATGGTCACTACTTTGTCAGGAACTGTGG---------------------GCTACTTGGAGACCCTTCATTGCTTGTTGATTTAC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            515729 181 +    935526 AT----ATACTTCATGCTTAAAATGTTT------------TAT----------------CTACTCAAAATGGGACTTTCAGAGTAGTCCAGCAATAAAGAATTAATTGATGGAACCAGATGGTGAATTCAAGGTCACTGCTTTGTCAGAAACTGTGGACCTTTCTTCTTGTTGATTTTGTTGATCAGAGATCCTTTGTTCCTCATTGATCTAC
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=552601.000000
s hg38.chr6_KI270758v1_alt     64092 131 +     76752 TCAAAGCTACAAATGAAAATAAGATGGACACTGTTATCCCTGACAGGTCTAAAGCTCTGAGTCCAATCAACCATCCACCTT--CA--CGTTTTCT-ACCATGTCCACCTGCAGCCACTGCTCCCCAGTCTGTAAGC
s panTro5.chr6             142761655 131 - 175400573 TCAAAGCTACAAATGAAAATAAGATGGACACTGTTATCCCTGACAGGTCTAAAGCTCTGAGTCCAATCAACCATCCACCTT--CA--CGTTTTCT-ACCATGTCCACCTGCAGCCACTGCTCCCCAATCTCTAAGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909304 131 - 173848474 TCAAAGCTACAAATGAAAATAAGATGGACACTGTTATCCCTGACAGGTCTAAAGCTCTGAGTCCAATCAACCATCCACCTT--CA--CGTTTTCT-ACCATGTCCACCTGCAGCCACTGCTCCCCAATCTCTAAGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433535 131 +   2807050 TCAAAGCTACAAATGAAAATAAGATGGACACTGTTATCCCTGACAGGTCTAAAGCTCTGAGTCCAATCAACCATCCACCTT--CA--CGTTTTCT-ACCACGTCCACCTGCAGCCACTGCTCCCCAATCTCTAAGC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747538 131 - 122973662 TCAAAGCTACAAATGAAAATAAGATGGACACTGTTATCCCTGACATGTCTAAAGCTCTGAGTCCAATAGGCCATCTACCTT--CA--CATTTTCT-ACCTTGTCCACCTCCAGCCACTGCTCCCCAGTCTCTAGGC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686522 133 - 171630274 TCACAGCTACAAATGAAAATAAGATAAACACTGTTATACCTGACATTCCTGAAGCTCTGAGTCCAACAGACCACCTACCTT--CATGTGTTTTCT-ACTCCGTCTCCCACCAGCCACTGCTCCCCAGTCCCTAAGC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            242966 133 +   1154217 TCAAAGCTGCAAATGAAAATAAGATAAACACTGTCATACCTGACATTCCTGAAGCTCTGAGTCCAACAGACCACCTACCTT--CATCCATTTTCT-ACCCTGTCTCCCACCAGCCACTGCTCCCCAGTCCCTAAGC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060073 133 +  15232693 TCAAAGCTACAAATGAAAATAAGATAAACACCGTTATACCTGACATTCCGGAAGCTCTGAGTCCAACAGACCATCCACCTT--CATGTGTTTTCT-ACCCTGTCTCCCACCAGCCACTGCTCCCCAGTCCCTAAGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309728 133 +    446445 TCAAAGCTACAAATGAAAATAAGATAAGCACTGTTATACCTGACATTCCTGAAGCTCTGAGTCCAACAGACCGTCTACCTT--CATGTGTTTTCT-ACCCTGTCTCCCACCAGCCACTGCTCCCCAGTCCCTAAGC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      170582 132 +   1371726 CCACAGCCACAGATGAGGACAAGGTGGGCTTTGTTATCCCTGACATTTCTACAATGCTGATTCCAGTAGACCATCTGCCTT--CA--TATTCTCTCTCACCGTCCACCTCCAGTTACTGCTCCTCAATCCCTAAGC
i proCoq1.NW_012150019v1   C 0 I 4
s otoGar3.GL873550          15363463 112 -  18854210 ------CCACA----------------GCTTTGTTATCCCTGACATGTCTACAAAGTTGATGCCCATAGACCATCTGCCCTCACA--CATTTTCTCACACTGTCCACCTCCAGCCACTGCTCCTCAATCTCCAAGC
i otoGar3.GL873550         C 0 I 4
s canFam3.chr12             70411599 132 -  72498081 CCATCCTTAGAGATAAGGATATGATGGATGATGTTATCCCTGGTATTTCTACAACTATGATTCCAATATAACATCAACCTT--AA--CATTTTATTTCATTGCCCACCTCTAGCTTTTGATCTCCAGTCTCGAAGC
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            515910 128 +    935526 CCACAGCCATAAAAGA-GATGTGATGGACACTGTCA---CTGACATTTCTACAACTCTGATTTCAGTAGACTACCTTACTT--CA--TAATTTCTTTCATTGTCCTCCTCCACCTTATGATCTCCAACCCCTAAGT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4505338 134 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=181139.000000
s hg38.chr6_KI270758v1_alt     64223 27 +     76752 TTAGAAGGACAAACA-CCCATTAAAATG
s panTro5.chr6             142761786 27 - 175400573 TTAGAAGGACAAACA-CCCATTAAAATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909435 27 - 173848474 TTAGAAGGACAAACA-CCCATTAAAATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433666 27 +   2807050 TTAGAAGGACAAACA-CCCATTAAAATG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747669 27 - 122973662 TTAGAAGGACAAACA-CTCATTAAAATG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686655 27 - 171630274 TTAGAAGGACAAACA-CCCATTAAAATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243099 27 +   1154217 TTAGAAGGACAAACA-CCCATTAAAATG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060206 27 +  15232693 TTAGAAGGACAAACA-CCCATTAAAATG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309861 27 +    446445 TTAGAAGGACAAACC-CCCATTAAAATG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4505472 27 + 123392446 TTAGAAGGACAAACA-CACATTAAAATG
i micMur3.chr6             I 134 C 0
s proCoq1.NW_012150019v1      170718 27 +   1371726 TTGGAAGGACAAACA-CACATTAAAATG
i proCoq1.NW_012150019v1   I 4 C 0
s otoGar3.GL873550          15363579 26 -  18854210 TTAGAAGGACAAATG-CACATT-AAATG
i otoGar3.GL873550         I 4 C 0
s canFam3.chr12             70411731 26 -  72498081 TTAGAAGAACAAA-A-TCCATTAAAATG
i canFam3.chr12            C 0 I 1654
s dasNov3.JH569424            516038 28 +    935526 CTGGTAGGATAGAAACCCCATTAAAATG
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=220431.000000
s hg38.chr6_KI270758v1_alt     64250 37 +     76752 AGTCAAGAAGTGACAAGTTTAAGAATCTTGTTGTAGA
s panTro5.chr6             142761813 37 - 175400573 AGTAAAGAAGTGACAAGTTTAAGAATCTTGTTGTAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909462 37 - 173848474 AGTAAAGAAGTGACAAGTTTAAGAATCTTGTTGTAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433693 37 +   2807050 AGTAAAGAAGTGACAAATTTAAGAATCTTGTTGTAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747696 36 - 122973662 AGTAAAGAAGTGACAAG-TTAAGAATCTTGTTGTAGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686682 37 - 171630274 AGTAAAGAAGTGACAAGTGGAAGAATCTTGTCGTAGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243126 37 +   1154217 AGTAAAGAAGTGACAAGTGGGCAAATCTTGCTGTAGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060233 37 +  15232693 AGTAAAGAAGTGACAAGTGGAAGAATCTTGTTATAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309888 37 +    446445 AGTAAAGAAGTGACAAGTGGAAGAATCTTGTTGTAGA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4505499 37 + 123392446 AGCGGAGAAGTGATAAGTGAAAGAATCTTGTTTTAGA
i micMur3.chr6             C 0 I 54
s proCoq1.NW_012150019v1      170745 37 +   1371726 AGCAGAGAGATGATAAGTGAAAGAATCTTGTTTTAGA
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15363605 37 -  18854210 AGTGGAGAAATGGTAAGTGAAAGAATCTTGTTTTAGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70413411 37 -  72498081 AGTGGAGGAATGACAGGTGAAGGAATCTCATTGTAGA
i canFam3.chr12            I 1654 C 0
s dasNov3.JH569424            516066 37 +    935526 ACCAGAGAAGTGTCAAGTGGGGAAATCCTGTTGTAGA
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=7098.000000
s hg38.chr6_KI270758v1_alt     64287 1 +     76752 A
s panTro5.chr6             142761850 1 - 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909499 1 - 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433730 1 +   2807050 A
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747732 1 - 122973662 A
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686719 1 - 171630274 A
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243163 1 +   1154217 A
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060270 1 +  15232693 A
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309925 1 +    446445 A
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      170782 1 +   1371726 A
i proCoq1.NW_012150019v1   C 0 I 53
s otoGar3.GL873550          15363642 1 -  18854210 A
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70413448 1 -  72498081 A
i canFam3.chr12            C 0 I 1
s dasNov3.JH569424            516103 1 +    935526 A
i dasNov3.JH569424         C 0 I 1
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4505536 54 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=183553.000000
s hg38.chr6_KI270758v1_alt     64288 48 +     76752 AAAA-TATGAATTTAGACTCTGAAAAAGAGATAGTAAAAACTCCTCTTG
s panTro5.chr6             142761851 48 - 175400573 AAAA-TATGAATTTAGACTCTGAAAAAGAGATAGTAAAAACTCCTCTTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909500 48 - 173848474 AAAA-TATGAATTTAGACTCTGAAAAAGAGATAGTAAAAACTCCTCTTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433731 48 +   2807050 AAAA-TATGAATTTAGACTCTGAAAAAGAGATAGTATAAACTCCTCTTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747733 48 - 122973662 AAAA-TAAGAATTTAGACTCTGAAGAAGAGATAGTAAAACCTCCTCTTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686720 49 - 171630274 AAAAATATGAATTTAGACTCTGAAGAAGAGATAGTAAAAACTCCTCTTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243164 49 +   1154217 AAAAATATGAATTTAGACTCTGAAGAAGAGATGGTAAAAACTCCTCTTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060271 46 +  15232693 AAAA--ATGAATTTAGACTCTGAAGAAGAGATA-TAAAAACTCCTCTTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309926 48 +    446445 AAAA-TATGAACTTAGACTCTGAAGAAGAGACAGTAAAAACTCCTCTTG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15363644 48 -  18854210 AAAA-TATTAATTCAGATCCTACTGGAAAGATACTAAAACCTCATTTGG
i otoGar3.GL873550         I 1 I 1
s canFam3.chr12             70413450 48 -  72498081 AAAA-TATGGATTTAGTTTCTTCAGGTGAGATATTTAAAAGCTCATTTG
i canFam3.chr12            I 1 I 2
s dasNov3.JH569424            516105 46 +    935526 AGAA-TATGAATTGAG-CCCTGCAGGAGAGATACTAAAAACCCATTGG-
i dasNov3.JH569424         I 1 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4505536 54 + 123392446 I
e proCoq1.NW_012150019v1      170783 53 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=184272.000000
s hg38.chr6_KI270758v1_alt     64336 34 +     76752 AACCTCATGATGAATGTCCTAAGTGTATAAAAAA
s panTro5.chr6             142761899 34 - 175400573 AACCTCATGCTGAATGTCCTAAGTGTATAAAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909548 34 - 173848474 AACCTCATGCTGAATGTCCTAAGTGTATAAAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433779 34 +   2807050 AACCTCATGCTGAATGTCCTAAGTGTATAAAAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747781 34 - 122973662 AACCTCATGCTGAATGTCCTAAGTGTATAAAAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686769 33 - 171630274 AGCCTCATACTGAATGTCCTAAGTGTATAAGAA-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243213 33 +   1154217 AGCCTCATACTGAATGCCCTAAGTGTATAAGAA-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060317 33 +  15232693 AGCCTCATACTGAATGTCCTAAGTATATAAGAA-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      309974 33 +    446445 AGCCTCATACTGAATGTCCTAAGTGTATAAGAA-
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4505590 34 + 123392446 AACCTCATGCTGAATGTCCTGAGTGTATAAAAAA
i micMur3.chr6             I 54 I 40
s proCoq1.NW_012150019v1      170836 32 +   1371726 AACCTCATGCTGAATGTC--GAGTGTATAAGAAA
i proCoq1.NW_012150019v1   I 53 I 1
s otoGar3.GL873550          15363693 34 -  18854210 AACCTCATGCTGCATGTCCTGAGTGTGTAAGAAA
i otoGar3.GL873550         I 1 I 1
s canFam3.chr12             70413500 34 -  72498081 AACCTCATGCTGATTGTTCTGAATATGTAACAAA
i canFam3.chr12            I 2 I 1
s dasNov3.JH569424            516151 19 +    935526 AACCTGATGGTGAATGCCC---------------
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=199615.000000
s hg38.chr6_KI270758v1_alt     64370 44 +     76752 GTAAAATGTCTAAGGCTGAACCTGTTAC-CTTTCATGTTCCATAC
s panTro5.chr6             142761933 44 - 175400573 GTAAAATGTCTAAGGCTGAACCTGTTAC-CTTTCGTGTTCTATAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909582 44 - 173848474 GTAAAATGTCTAAGGCTGAACCTGTTAC-CTTTCGTGTTCTATAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433813 44 +   2807050 GTAAAATGTCTAAGGCTGAACCTGTTAC-CTTTCATGTTCTATAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747815 44 - 122973662 GTAAAATGTCTAAGGCTGAACCTGTCAC-CCTTCGTGTTCTATAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686802 44 - 171630274 GTAAAATATCAAAGGCTGAACCTGTTAC-CTTTCTTGTTTTTTAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243246 44 +   1154217 GTAAAATATCTAAGGCTGAACCTGTTAC-GTTTCTTGTTCTATAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060350 44 +  15232693 GTAAAATATCTAAGGCTGAACCTGTCAC-CTTTCTTGTTCTGTAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      310007 44 +    446445 GTAAAGTATCTAAGGCTGAACCTGTTAC-CTTTCTTGTTCCATAT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      170869 44 +   1371726 GTAAAATATTCACAGCTGAACCCATTAT-CCTTCTTGTTCTATAT
i proCoq1.NW_012150019v1   I 1 C 0
s otoGar3.GL873550          15363728 43 -  18854210 ATAAAATA-TCGAAGCTGAACTCTTTAT-TCTTCTTGTTCTATAT
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70413535 44 -  72498081 GTAAAATATCCAAAATGGAACCCATTAT-CCTTTCTGTTCTATAT
i canFam3.chr12            I 1 C 0
s dasNov3.JH569424            516170 37 +    935526 -----ATTTCCA---CTGAATCCGTTATAACTTCCTGGTCTACTT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4505624 40 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=242625.000000
s hg38.chr6_KI270758v1_alt     64414 43 +     76752 CACAGTTCCA-CCCCATTTGTTCCTGTTTTGTTGTTACCCCCAT
s panTro5.chr6             142761977 43 - 175400573 CACAGTTCCA-CCCCATTTGTTCCTGTTTTGTTGTTACCCCCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909626 43 - 173848474 CACAGTTCCA-CCCCATTTGTTCCTGTTTTGTTGTTACCCCCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433857 43 +   2807050 CACAGTTCCA-CCCCATTTGTTCCTGTTTTGTTGTTACCCCCAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747859 43 - 122973662 CACAGTTCCA-CCTCATTTGTTCCTGTTTTGTTGTTACCCCCAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686846 43 - 171630274 AACAGTTCCACCCCCACCTGTTCCTGTTTTGTTGTTA-CCCCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243290 42 +   1154217 CACAGTTCCA-CCCCATCTGCTCCTGTTTTGTTGTTA-CCCCAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060394 43 +  15232693 CACAGTTCCACCCCCATCTGTTCCTGTTTTCCTGTTA-CCCCAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      310051 43 +    446445 CACAGTTCCACTCCCGTCTGTTCCCGTTTTGTTGTTA-CCCCAT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4505664 43 + 123392446 CACAGTTCCACT-CCCTTTGTTCCTGTTTTGTTGTTACCCCCAT
i micMur3.chr6             I 40 I 315
s proCoq1.NW_012150019v1      170913 44 +   1371726 CACAGTTCCACTCCCCTTTGTTCCTGTTTTGTTGTTACCCCCAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15363771 44 -  18854210 CATAGTTCCTCTCCTATGTGTTCCTGTTCTGTTGTTACGTCCAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70413579 41 -  72498081 ---CATTCCAATCCCATTTGTTCCTATTTTGTGGTTATCTCCAT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            516207 44 +    935526 CGTACTTCTTCTCCCACTTGTTCCTATTTTGTTGTCAGGCCCAT
i dasNov3.JH569424         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=451940.000000
s hg38.chr6_KI270758v1_alt     64457  95 +     76752 GTTTAGGGCTCGCATGTCCAGA------------------AATCCCTTCTCATCCACCATGTCCATTTGATTATAAC--------TATTAATATTTTATCACCA-TTTATTTACCTCTGTCC
s panTro5.chr6             142762020  95 - 175400573 GTTTAGGGCTCGCATGTCCAGA------------------AATCCCTTCTCATCCACCATGTCCATTTGATTATAAC--------TATTAATATTTTATCACCA-TTTATTTACCTCTGTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909669  95 - 173848474 GTTTAGGGCTCGCATGTCCAGA------------------AATCCCTTCTCATCCACCATGTCCATTTGATTATAAC--------TATTAATATTTTATCACCA-TTTATTTACCTCTGTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433900  95 +   2807050 GTTTAGGGCTCGCATGTCCAGA------------------AATCCCTTCTCATCCACCATGTCCATTTGATTATAAC--------TATTAATATTTTATCACCA-TTTATTTACCTCTGTCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747902  95 - 122973662 GTTTAGGGCTCGCATGTCCAGA------------------AATCCCTTCTCATCCACCATGTCCATTTGATTTTAAC--------TATTAATATTTTATCACCA-TTTATTTACCTCTGTCC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686889  95 - 171630274 GTTTAGGGTTCACATGTCCAGA------------------AGTCCCTCCTCACCCACCATGCCTATTTGATTATAAC--------TATTAATATTTTATCACTG-TTTATTTACCTCTGTCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243332  95 +   1154217 GTTTAGGGTTCACATGTCCAGA------------------AGTCCCTCCTCATCCACCATGTCTATTCGATTATAAC--------GATTAATATTTTATCACTA-TTTATTTACCTCTGTCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060437  95 +  15232693 GTTTAGGGTTCACATGTCCAGA------------------AGTCCCTCCTCACCCACCATGTCTATTTGATTACAAC--------TATTAATATTTTATCACTG-TTTATTTACCTCTGTCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      310094  95 +    446445 GTTTAGGGTTCACATGTCCAGA------------------AGTCCCTCCTCACCCACCATGTCTATTTGATTATAAC--------TATTAATATTTTATCACTC-TTTATTTACCTCTGTCC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      170957  93 +   1371726 ATATAGGGT--TTATGCCCACA------------------AATTCCTTCTTACCCACCATGTCTATTTGATTATACC--------TATTAATATTTTCCCACCA-TTTTGTTGCCCCTCTCC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15363815  93 -  18854210 ACACAGGG---ATATACCCACA------------------AATCCCTTCTTACCAACCACATTCATTTGGTTATATT-------ATATTAATATTTCTCTACCA-TCTGTTTGCCCCTCTTC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70413620  95 -  72498081 GTAAAGGGTTCTCATGTCCAGA------------------AATCCCTTCTCATTCACTAAATCCATTTGATTATAGC--------TATTAACATTTGTCCACTA-TTCATTTACCTCTGTCT
i canFam3.chr12            C 0 C 0
s dasNov3.JH569424            516251 120 +    935526 GAACAGGGCTC-TGTGTCCAGATACCTGAAAATCATCCTTGATCTCTCCTCACCCACcatagtcacct-attgcaacttggcccttagaagtatctggtaatcattttatgtgactccgtcc
i dasNov3.JH569424         C 0 N 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4505707 315 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=934602.000000
s hg38.chr6_KI270758v1_alt     64552 230 +     76752 TGCCTTGATTATTTCTTGA-TGAAATATGTAAGCC-TCCCTTTAGGGTCAGTGAAATTAAGA--CTAGGCTCTGGCTTGATTCTTCCTGGCTTCGAATACTGTCTTTGCCACTTAGTG----TGTGAC-GTGAAATTTCACCAAGGAGATACA-TCTACAGGAGAGATTG-TTAGAGGTACTTGTGGTTTACAGATCTGCAAATACTGTAG-AAGAAAAACTAAGGGGATCTCTTCCATCAT
s panTro5.chr6             142762115 230 - 175400573 TGCCTTGATTATTTCTTGA-TGAAATATGTAAGCC-TCCCTTTAGGGTCAGTGAAATTAGGA--CTAGGCTCTGGCTTGATTCTTcctggcttcgaatactgtctttgccacttagtg----tgtgac-ATGAAATTTCACCAAGGAGATACA-TCTACAGGACAGATTG-TTAGAGGCACTTGTGGTTTACAGATCTGCAAATACTGTAA-AAGAAAAACTAAGGGGATCTCTTCCATCAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909764 230 - 173848474 TGCCTTGATTATTTCTTGA-TGAAATATGTAAGCC-TCCCTTTAGGGTCAGTGAAATTAGGA--CTAGGCTCTGGCTTGATTCTTcctggcttcgaatactgtctttgccacttagtg----tgtgac-GTGAAATTTCACCAAGGAGATACA-TCTACAGGACAGATTG-TTAGAGGCACTTGTGGTTTACAGATCTGCAAATACTGTAA-AAGAAAAACTAAGGGGATCTCTTCCATCAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2433995 230 +   2807050 TGCCTTGATTATTTCTTGA-TGAAATATGTAAGCC-TCCCTTTAGGGTCAGTGAAATTAGGA--CTAGGCTCTGGCTTGATTCTTcctggcttcgaatactgtctttgccacttagtg----tgtgac-ATGAAATTTCACCAAGAAGATACA-TCTACAGGAGAGACTG-TTAGAGGCACTTGTGGTTTACAGATCTGCAAATACTGTAG-AAGAAAAACTAAGGGGATCTCTTCCATCAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45747997 230 - 122973662 TGCCTTGATTATTTCTTGA-TGAAATATGTAAGCC-TCCCTTTAGggtcagtgaaattagga--ctaggctctggattgattcttcctggcttcgaacactggctttgccacttagtg----tgtgac-GCAAAATTTCACCAAGGAGATACA-TCTGCAGGAGAGGTTG-TTAGAGGGACTTGTGGTTTACAGATCTGCAAATACTGTAG-AAAAAAAACTAAGGGGATCTCTTCCAACAT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138686984 232 - 171630274 TGGCTTGATTATTTCTTGA-TG-AATATGTAAGCC-TCCCTTTAGGGTCAGTGAAATTAGGA--CTAGGCTCTGGGTTGATTCTTCCTGGCTTCAAATACTGTCTTTGCTACTTAGTA----TGTGCT-GGGAAATTTTACCAAGGAGATACAGCTTGCAGGAGAGGTTGTTTAGAAGGACTTGTAGTTTACAGATCTGCAGATACTCTAGAAAAAAAATCTAAGGGGATCTCTTCCATCAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243427 231 +   1154217 TGCCTTGATCATTTCTTGA-TG-AATATGTAAGTC-TCCCTTTAGggtcagtgaaattagga--ctaggctctgggctgattcttcctggcttcaaatactggctttgccacttagta----tgtgCC-GGGAAATTTTACCAAGGAGATACAGCTTGCAGGAGAGTTTGTTTAGAAGGTCTTGTGGTTTACAGACCTGCAGATACTGTAG-AAAAAAATCTAAGGGGATCTCTTCCATCAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060532 232 +  15232693 TGCCTTGATCATTTCTTGA-TG-AATATGTAAGCC-TCCCTTTAGggtcagtgaaatcagga--ctaggctctgggttgattcttcctggcttcaaatactggctttgccacttagta----tgtgCC-GGGAAATTTTACCAAGGAGATACAGTTTGCAGGAGAGGTTGATTAGAAGGACTTGTGGTTTACAGATCTGCAAATACTGTAGAAAAAAAATCTAAGGGGATCTCTTCCATCAT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      310189 232 +    446445 TGCCTTGATTATTTCTTGA-TG-AATATGTAAGCC-TCCCTTTAGggtcagtgaaattagga--ctaggctctagattgattcttcctggcttcaaatactggctttaccacttacta----tgtgCC-GGGAAATTTCACCAAGGAGATACAGCTTGCAGGAGAGGTTGTTTAGAAGGAATTGTGGTTCACAGATCTGCAAATACTGTAGAAAAAAAACCTAAGGGGATCTCTTCCATCAT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      171050 238 +   1371726 TGCCTTTATCATTTCTTGCTTGAATTATGTAGGTCTTCCCTTTAGTGTCGGTGAAgttaagattctgggctatggattgattcttcctgggttcacctactggtttggccacttagtgactgtgtgCCAGGGAGATTTCACCAAGGAGATACATCTTCCAAGAGAGGATG-TTAAAAGGACTTGTGGTTTAAAGATCTGACAACAGTGCAG---AAAGACCTAAGCGGATCTCTTCCACCGT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15363908 236 -  18854210 TATCTTTATTATTTCTTGCTTGAATTATGTAACTCTTCCCTTTAGGGTCagtgaagttaagattctgggctctagattgatgtttcctgtgttcaattactggttctgccagttagtgattatatgCCAAGAAAATTTCACCAACAAGATTCATCTTCCAAGGGATGTTG-TTAAAGGGA-TTGTGGTTTAAAAAT-TGACAATAGTGTGG---AAAAACCTAAGCAGATCTCTTCCATCGT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70413715 227 -  72498081 TGCCTTCATTTTTGCTTAC-TT-GTTATATAACTCCTCCCTTTACTGTCTGTAAAGTTAATATTCTGGGCTCTGGTTTCATTCTTCCTAGGTTCCAATACTGGTTTTACCTCTAAGTT----TGTCA--ATGAAATTTTGCGAAGGAGATATATTTTCCCAGAGAGATTG-ATAATGGGAGTTGTGGTTTGAAGATCTGTTAAAAGTGTAG----AAAATCTAAGTGGTCCTTCTAGCTC--
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4505707 315 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=103165.000000
s hg38.chr6_KI270758v1_alt     64782 20 +     76752 CAGGAAGAAAGGGTTCATTT
s panTro5.chr6             142762345 20 - 175400573 CAGGAAGAAAGGGTTCATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140909994 20 - 173848474 CAGGAAGAAAGGGTTCATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434225 20 +   2807050 CAGGAAGAAAGGGTTCATTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748227 20 - 122973662 CAAGAAGAAAGGGATCATTT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687216 20 - 171630274 TGGGAAGAAAGAATTCATTT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243658 16 +   1154217 CAGGAAGAAAGGATTC----
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060764 20 +  15232693 CGGGAAGAAAGGATTCATTT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      310421 20 +    446445 CGGGAAGAAAGGGTTCATTT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4506022 20 + 123392446 CAGGGAGAGAGGGTTCATTT
i micMur3.chr6             I 315 C 0
s proCoq1.NW_012150019v1      171288 20 +   1371726 CAGGGAGAGAGGGTTCGTTT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15364144 20 -  18854210 GAGGAAGAGAGAGTTCACTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70413942 20 -  72498081 CACGAAGAGGGGGCTCATTT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=31603.000000
s hg38.chr6_KI270758v1_alt     64802 6 +     76752 AACAGA
s panTro5.chr6             142762365 6 - 175400573 AACAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910014 6 - 173848474 AACAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434245 6 +   2807050 AACAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748247 6 - 122973662 AACAGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687236 6 - 171630274 AACAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243674 6 +   1154217 AACAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060784 6 +  15232693 AACAGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      310441 6 +    446445 AACAGG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4506042 6 + 123392446 AACAGA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      171308 6 +   1371726 AACAGG
i proCoq1.NW_012150019v1   C 0 C 0
s canFam3.chr12             70413962 6 -  72498081 AACAAA
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15364164 0 -  18854210 C

a score=46210.000000
s hg38.chr6_KI270758v1_alt     64808 9 +     76752 AGAAGCTCg
s panTro5.chr6             142762371 9 - 175400573 AGAAGCTCg
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910020 9 - 173848474 AGAAGCTCg
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434251 9 +   2807050 AGAAGCTCg
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748253 9 - 122973662 AGAAGCTCg
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687242 9 - 171630274 AGAAGCTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243680 9 +   1154217 AGAAGCTCG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060790 9 +  15232693 AGAAGCTCg
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      310447 9 +    446445 AGAAGCTCg
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4506048 9 + 123392446 AGAAGCTCG
i micMur3.chr6             C 0 I 227
s proCoq1.NW_012150019v1      171314 9 +   1371726 AGAAGCTCG
i proCoq1.NW_012150019v1   C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e canFam3.chr12             70413968 0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15364164 0 -  18854210 C

a score=4500.000000
s hg38.chr6_KI270758v1_alt     64817 1 +     76752 g
s panTro5.chr6             142762380 1 - 175400573 g
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910029 1 - 173848474 g
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434260 1 +   2807050 g
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748262 1 - 122973662 g
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687251 1 - 171630274 g
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243689 1 +   1154217 G
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060799 1 +  15232693 g
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      310456 1 +    446445 g
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      171323 1 +   1371726 G
i proCoq1.NW_012150019v1   C 0 I 24
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e canFam3.chr12             70413968 0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15364164 0 -  18854210 C

a score=283158.000000
s hg38.chr6_KI270758v1_alt     64818 119 +     76752 ccaggtgtggtggctcacgcctgtaatcccaacactttctgaggacaaagcgggtggatcacaaggtaaagagatggagaccatccgggccaacatggtgaaaccctctctcttatact
s panTro5.chr6             142762381 119 - 175400573 ccaggtgcggtggctcacgcctgtaatcccaacactttctgaggacaaggtgggtggatcacaaggtaaagagatggagaccatctgggccaacacggtgaaaccctctctcttatact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910030 119 - 173848474 ccaggtgcggtggctcacgcctgtaatcccaacactttctgaggacaaggtgggtggatcacaaggtaaagagatggagaccatctgggccaacacggtgaaaccctctctcttatact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434261 119 +   2807050 ccaggtgtggtggctcacgcctgtaatcccaacactttctgaggacaaggcgggtggatcacaaggtaaagagatggagaccatccaggccaacacagtgaaaccctctctcttatact
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748263 119 - 122973662 ccgggtgcggtggctcatgcctgtaatcccaacactttctgaggacaaggcaggcagatcacaaggtaaagagatggagaccatccgggccaacatggtgaaaccctgtctcttatact
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687252 114 - 171630274 cctggggcagtggctcacacctgt-atcccagcactttgagaggctgaggca-gtggatcatgaggtcacgagatcaagaccaccctggccaacatggtgaaaccctgtctc---tact
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243690 116 +   1154217 CCTCAGGGggtggctcacacctataatcccagcactttgggaggctgaggcaggtggatcacgaggtcaagagatcaagaccacccaagccaacatggtgaaaccccgtctc---tact
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14060800 116 +  15232693 cctggggcagtggctcacacctataatcccaacactttgggaagccaaggcagatggatcatgaggtcaagagatcaagactaccctggccaacatggtgaaaccccgtctc---aact
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      310457 113 +    446445 cctagggcggtggctcacacctgtaatcccagcactttgggaggctgaggca-gtggatcatgaggccaagagattgagaccaccctggccaacatggtgaaacc--gtctc---tact
i aotNan1.NW_018508875v1   C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e proCoq1.NW_012150019v1      171324  24 +   1371726 I
e canFam3.chr12             70413968   0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15364164   0 -  18854210 C

a score=20610.000000
s hg38.chr6_KI270758v1_alt     64937 15 +     76752 aaaaatacaaaaaTT
s panTro5.chr6             142762500 15 - 175400573 aaaaatacaaaaaTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910149 15 - 173848474 aaaaatacaaaaaTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434380 15 +   2807050 aaaaatacaaaaaTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748382 15 - 122973662 aaaaatacaaaaaTT
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016107339v1    14060916 15 +  15232693 aaaaatacaaaaatt
i cebCap1.NW_016107339v1   C 0 I 596
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e proCoq1.NW_012150019v1      171324 24 +   1371726 I
e aotNan1.NW_018508875v1      310570  0 +    446445 C
e calJac3.chr4             138687366  0 - 171630274 C
e canFam3.chr12             70413968  0 -  72498081 C
e saiBol1.JH378315            243806  0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15364164  0 -  18854210 C

a score=249035.000000
s hg38.chr6_KI270758v1_alt     64952 278 +     76752 Gtggtttccaggttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcgtgggaattgaacaatgagaacacctggacacagggcggggaacatcacacaccagggtctatcgtggggtgggaggagcggggagggatagcattaggagaaatacctaatttaaatgatgagttgatgggtgcagcaaaccaacatggcacatatatacatgtgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtattaaa
s panTro5.chr6             142762515 278 - 175400573 Gtggtttccaggttcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcgtgggaattgaacaatgagaacacctggacacagggcggggaacatcacacaccagggtctgtcgtggggtgggaggagcggggagggatagcattaggagaaatacctaatttaaatgatgagttgatgggtgcagcaaaccaacatggcacatgtatacatgtgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtattaaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910164 278 - 173848474 Gtggtttccgggttcatccatgtccctgcaaaggacatgaactcatccttttttatggctgcgtgggaattgaacaatgagaacacctggacacagggcggggaacatcacacaccagggtctgtcgtggggtgggaggagcggggagggatagcattaggagaaatacctaatttaaatgatgagttgatgggtgcagcaaaccaacatggcacatgtatacatgtgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtattaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434395 278 +   2807050 Gtggtctccaggttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcgtgggaattgaacaatgacaatacctggacacagggcggggaacatcacacaccagggtctgtcatggggtgggaggagcggggagggatagcattaggagaaatacctaatttaaatgatgagttgatgggtgcagtaaaccaacatggcacatgtatacatgtgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtattaaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748397 277 - 122973662 atggtttccagcttcatccatgtccctacaaaggacatgaactcatccttttttatggctgcatgggaattgaacaatgagaacacctggacacagggcagggaacatcccacaccagagtctgtcgtggggtggggggag-ggggagggatagcattaggagaaatacctaatgtaaatgatgagttgatgggtgcagcaaaccaacatggcacatgtatacatgtgtaacaaacctgcacattgtgcacatgtaccctagaacttaaagtatTTTt
i nomLeu3.chr1a            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e cebCap1.NW_016107339v1    14060931 596 +  15232693 I
e proCoq1.NW_012150019v1      171324  24 +   1371726 I
e aotNan1.NW_018508875v1      310570   0 +    446445 C
e calJac3.chr4             138687366   0 - 171630274 C
e canFam3.chr12             70413968   0 -  72498081 C
e saiBol1.JH378315            243806   0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15364164   0 -  18854210 C

a score=338074.000000
s hg38.chr6_KI270758v1_alt     65230 200 +     76752 aaaaatacaaaaattagctgggcatggtggtacatgcctatagtcccagctactcaggaggctgaggcaggacaatcgcttgaacctgggaggtgcaggttacagtgagcagagatggtgccacagcactccagcctggtgacagagcgagactccatcaaagaaa----aaacaaacaaacaaaaaTACACAAACAAACAAAA
s panTro5.chr6             142762793 200 - 175400573 aaaaatacaaaaattagctgggcgtggtggtacatgcctatagtcccagctactcaggaggctgaggcaggacaatcgcttgaacctgggaggtgcaggttacagtgagcagagatggtgccacagcactccagcctggtgacagagcgagactccgtcaaagaaa----aaacaaacaaacaaaaaTACACAAACAAACAAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910442 204 - 173848474 aaaaatacaaaaattagctgggcgtgctggtacatgcctatagtcccagctactcaggaggctgaggcaggacaatcgcttgaacctgggaggtgcaggttacagtgagcagagatggtgccacagcactccagcctggtgacagagcgagactccgtcaaagaaaaaacaaacaaacaaacaaaaatacacaaacaaacaaaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434673 204 +   2807050 aaaaatacaaaaattagctgggcatggtggtacatgcctatagtcccagctactcaggaggctgaggcaggagaatctcttgaacctgggaggtgcaggttacagtgagcagagatggtgccacagcactccagcctggtgacagagcaagactccgtcaaagaaaaaacaaacaaacaaacaaaaatacacaaacaaacaaaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748674 202 - 122973662 aaaaatacaaaaattagctgggcatggtggtacatgcctatagtcccaactactcaggaggctgaggcaggagaatcgcttgaacctgggaggcgcaggttgcagtgagccaagatcgcgccacagcactgcagtctggtgacagagtaagactccgtcaaaaaacaaacaaacaaacaaacaaaaaaccac--acaaacaaac
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687366 140 - 171630274 aaaaatacaaaaattagctgggcgtggtggtgcccacctgtagtcccagctgctcaggaggctgaggc---agaattgcttaaacctggg-gtcggaggttgcaataagccaagat-----------------------------AGAGAGACTTTGTCAAAAAAA----AAAAAAA---------------------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243806 175 +   1154217 aaaaatacaaaaattagctgggcgtggtggtgtgcacctgtagtcccagctgctcaggaggctggggcaggagaattccttgatcgtgggagacggaggttgcagtgaggcgagatcgtgccagtgcactccagcctggaaacagagagagactttgtcaaaaaaa----aaaaaaa-------------------------aa
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      310570 184 +    446445 aaaaatacaaaaattagctgggcgtggtggtgcacacctgtagtcccagctgctcaagaggccaaggcaggagaattgcttaaacctgggagtcggaggttgcactaagccgagatcgtgccagtgcactccagcctggaaacagagagagactttgtcaaaaaaa----aaaaaaaaaa----------------aaaaaaaa
i aotNan1.NW_018508875v1   C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e cebCap1.NW_016107339v1    14060931 596 +  15232693 I
e proCoq1.NW_012150019v1      171324  24 +   1371726 I
e canFam3.chr12             70413968   0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15364164   0 -  18854210 C

a score=13449.000000
s hg38.chr6_KI270758v1_alt     65430 6 +     76752 AACAGG
s panTro5.chr6             142762993 6 - 175400573 AACAGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910646 6 - 173848474 aacaGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434877 6 +   2807050 aacaGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748876 6 - 122973662 aaCAGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687506 4 - 171630274 --CAGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243981 6 +   1154217 aCCTGA
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      310754 6 +    446445 aaCAAG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15364164 6 -  18854210 AACAGG
i otoGar3.GL873550         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e cebCap1.NW_016107339v1    14060931 596 +  15232693 I
e proCoq1.NW_012150019v1      171324 24 +   1371726 I
e canFam3.chr12             70413968 0 -  72498081 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=94570.000000
s hg38.chr6_KI270758v1_alt     65436 31 +     76752 AGAAGCTCATATTCTATATCCTTGAAGAC---AG
s panTro5.chr6             142762999 31 - 175400573 AGAAGCTCATATTCTATATCCTTGAAGAC---AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910652 31 - 173848474 AGAAGCTCATATTCTATATCCTTGAAGAC---AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434883 31 +   2807050 AGAAGCTCATATTCTATATCCTTGAAGAC---AA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748882 32 - 122973662 AGAAGCTCATATTCTATATCCTTGAAGAC--AAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687510 32 - 171630274 AGAAACTCATATTCTATATACTTGAAGAC--AAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            243987 32 +   1154217 AGAAACTCATATTCTATATCTTTGAAGAC--AAA
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      310760 32 +    446445 ACAAACTCACATTCTATATCCTTGAAGAC--AAA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15364170 34 -  18854210 AGCAGCTCGTATTCTGTATCCTTAAGGGCATAAA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70413968 30 -  72498081 AGAAGCTTATATTTTATATCCTTGAAGAC---A-
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e cebCap1.NW_016107339v1    14060931 596 +  15232693 I
e proCoq1.NW_012150019v1      171324 24 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=247933.000000
s hg38.chr6_KI270758v1_alt     65467 65 +     76752 CTTGATGATAAACAGCTGGAGAAGTCTTAGATGCAGCAAGGACAAGGGAAACCCTCAACAGTGGG
s panTro5.chr6             142763030 65 - 175400573 CTTGATGATAAACAGCTGGAGAAGTCTTACATGCAGCAAGGACAAGGGAAACCCTCAACAGTGGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910683 65 - 173848474 CTTGATGATAAACAGCTGGAGAAGTCTTACATGCAGCAAGGACAAGGGAAACCCTCAACAGTGGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434914 65 +   2807050 CTTGATGATAAACAGCTGGAGAAGTCTTACATGCAGCAAGGACAAGGAAAACCCTCAACAGTGGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748914 63 - 122973662 CTTGATGATAAACAGCTGGAGAAGTC--AGATGCAGCAAGGACAAGGGAAACCCTCAACAGTGGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687542 65 - 171630274 CTTGGTGATAAACAGCTGGAGAAGTCTTAGATACAGTAAGGACAAGGAAAACCCTCAACAGTGGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244019 65 +   1154217 CTTGGTGATAAACAGCTGGAAAAGTCTTAGATGCAGTAATGACAAGGAAAACCCTCAACAGTGGG
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      310792 65 +    446445 CTTGGTGATAAACAGCTGGAGAAGTCTTAGATGCAGTAAGGACAAGGGAAACCCTCAACAGTCGG
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      171348 65 +   1371726 CTTGGTGATAAGCAGTTGGAGAAGGCTGAGGTGCAGTAAAGACAAGGAAAACCCTCAGCAGTGGG
i proCoq1.NW_012150019v1   I 24 I 15
s otoGar3.GL873550          15364204 65 -  18854210 CTTGGTGATCAGCAGCTGGAGAAGGCGTAAAGGCAGGAAAGACCAGGGAAACCCTCAACAGTAGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70413998 54 -  72498081 --------TAAAC--TTAGTGAAGCCTTAGTTGCATTAAAGGCAAAG-AAACTCTCAATAGTGAG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e cebCap1.NW_016107339v1    14060931 596 +  15232693 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=45774.000000
s hg38.chr6_KI270758v1_alt     65532 17 +     76752 CAGAACA-GGTCAGGAAG
s panTro5.chr6             142763095 17 - 175400573 CAGAACA-GGTCAGGAAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910748 17 - 173848474 CAGAACA-GGTCAGGAAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434979 17 +   2807050 CAGAACT-GGTCAGGAAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748977 17 - 122973662 TAGAACA-GGTCAGGAAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687607 17 - 171630274 TAGAACC-AGTCAGGAAG
i calJac3.chr4             C 0 I 302
s saiBol1.JH378315            244084 17 +   1154217 TAGAACA-GGTGAGGAAG
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      310857 17 +    446445 TAGAACC-GGTCAGGAAG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15364269 18 -  18854210 AAAAACATAGTCTGGAAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70414052 18 -  72498081 AAGAAGATGGTCAGAAAG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e cebCap1.NW_016107339v1    14060931 596 +  15232693 I
e proCoq1.NW_012150019v1      171413 15 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=12089.000000
s hg38.chr6_KI270758v1_alt     65549 3 +     76752 AAA
s panTro5.chr6             142763112 3 - 175400573 AAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910765 3 - 173848474 AAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434996 3 +   2807050 AAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748994 3 - 122973662 AAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687926 3 - 171630274 aag
i calJac3.chr4             I 302 C 0
s saiBol1.JH378315            244101 3 +   1154217 AAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14061527 3 +  15232693 aaa
i cebCap1.NW_016107339v1   I 596 C 0
s aotNan1.NW_018508875v1      310874 3 +    446445 AAG
i aotNan1.NW_018508875v1   C 0 I 312
s proCoq1.NW_012150019v1      171428 3 +   1371726 AAA
i proCoq1.NW_012150019v1   I 15 C 0
s otoGar3.GL873550          15364287 1 -  18854210 --A
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70414070 3 -  72498081 AAA
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=22311.000000
s hg38.chr6_KI270758v1_alt     65552  7 +     76752 -AAGAA--TG--
s panTro5.chr6             142763115  7 - 175400573 -AAGAA--TG--
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910768  7 - 173848474 -AAGAA--TG--
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2434999  7 +   2807050 -AAGAA--TG--
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45748997  7 - 122973662 -AAGAA--TG--
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687929  7 - 171630274 -aaGTA--TG--
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244104  7 +   1154217 -AAGAA--TG--
i saiBol1.JH378315         C 0 I 313
s cebCap1.NW_016107339v1    14061530  7 +  15232693 -aagaa--TA--
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311189  7 +    446445 -AAGAA--TG--
i aotNan1.NW_018508875v1   I 312 C 0
s proCoq1.NW_012150019v1      171431  7 +   1371726 -AATAA--TG--
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15364288  9 -  18854210 -AATAACCTG--
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70414073 10 -  72498081 AAAAAA--TATG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=84690.000000
s hg38.chr6_KI270758v1_alt     65559 21 +     76752 TT---------AATGTTAGCAATGACTCTT-----
s panTro5.chr6             142763122 21 - 175400573 TT---------AATGTTAGCAATGACTCTT-----
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910775 21 - 173848474 TT---------AATGTTAGCAATGACTCTT-----
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435006 21 +   2807050 TT---------AATGTTAGCAATGACTCTT-----
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749004 21 - 122973662 TT---------ACTGTTAGCAATGACTCTT-----
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687936 21 - 171630274 CT---------AATGTTAGCAATGACTCTT-----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244424 19 +   1154217 CT---------AACCTTAGCAATGA--CTT-----
i saiBol1.JH378315         I 313 C 0
s cebCap1.NW_016107339v1    14061537 21 +  15232693 CT---------AATGTTAGCAACTACTCTT-----
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311196 21 +    446445 CT---------AATGTTAGCAATGACTCTT-----
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      171438 21 +   1371726 CT---------AATGTTAGCAATGACTCTT-----
i proCoq1.NW_012150019v1   C 0 I 98
s otoGar3.GL873550          15364297 30 -  18854210 CTGATGTTTGCAATGTTAGTGATGACTCCC-----
i otoGar3.GL873550         C 0 I 7
s canFam3.chr12             70414083 26 -  72498081 CC---------AGTGTTAGCAATGACTTTCTCCAT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=219774.000000
s hg38.chr6_KI270758v1_alt     65580 59 +     76752 ----GGTACAGATGTTTCTTTATTTCTACTTTACTGCTTTCTCTCCTAAAGTATAAACTGCAA
s panTro5.chr6             142763143 59 - 175400573 ----GGTACAGATGTTTCTTTATTTCTACTTTACTGCTTTCTCTCCTAAAGTATAAACTGCAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910796 59 - 173848474 ----GGTACAGATGTTTCTTTATTTCTACTTTACTGCTTTCTCTCCTAAAGTATAAACTGCAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435027 59 +   2807050 ----GGTACAGATGTTTCTTTATTTCTACTTTACTGCTTTCTCTCCTAAAGTATAAACTGCAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749025 59 - 122973662 ----GCTACAGATGTTTCTTTATTTCTACTTTACTGCTTTCTCTCCTAAAGTATAAACTGCAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138687957 59 - 171630274 ----GCTACAGATGTTTCTTTATTTCTACTTTACTGCTTTCTCTCCCAAAGCATAAACTGCAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244443 59 +   1154217 ----GCTACAGATGTTTCTTTATTTCTACTTTCCTGCTTTCTCTCCTAAAGTATAAACTGCAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14061558 52 +  15232693 ----GCTACAGATGTTTCTTTATTTCTACTTTACTGCTTTCTCTCC-------TAAACTGCAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311217 59 +    446445 ----GCTACAGATGTTTCTTTATTTCTACTTTACTGCTTTCTCTCCAAAAGTATAAACTACAA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15364334 57 -  18854210 ----TCTACAGACACCGCTTCATTCCTACTTAACTGTCTTCTCT--GAGAGCATAAACTGAAA
i otoGar3.GL873550         I 7 C 0
s canFam3.chr12             70414109 62 -  72498081 GAAGTCTGTAAATATTTCTTCATACATATTTGACTGTTTT-TCCCTGAAAATATAAACCACAA
i canFam3.chr12            C 0 I 196
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e proCoq1.NW_012150019v1      171459 98 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=89946.000000
s hg38.chr6_KI270758v1_alt     65639 21 +     76752 CACTGACTCCTCTTTCATTCA
s panTro5.chr6             142763202 21 - 175400573 CACTGACTCCTCTTTCATTCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910855 21 - 173848474 CACTGACTCCTCTTTCATTCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435086 21 +   2807050 CATTGACTCCTCTTTCATTCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749084 21 - 122973662 CATTGACTCCTCTTTCATTCA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138688016 21 - 171630274 CACCGGCTCCTCTTTCATTCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244502 21 +   1154217 CACTGACTCCTCTTTCATTCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14061610 21 +  15232693 CACTGACTCCTCTTCCATTTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311276 21 +    446445 CACTGACTCCTCTTTCATTCA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15364391 21 -  18854210 CATCAATTCCTTTTTCATTCA
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70414367 21 -  72498081 cATCAATTCATTTTTCATTCA
i canFam3.chr12            I 196 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506057 227 + 123392446 I
e proCoq1.NW_012150019v1      171459 98 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=26774.000000
s hg38.chr6_KI270758v1_alt     65660 6 +     76752 --CATTCT
s panTro5.chr6             142763223 6 - 175400573 --CATTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910876 6 - 173848474 --CATTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435107 6 +   2807050 --CATTCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749105 6 - 122973662 --CATTCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138688037 6 - 171630274 --CATTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244523 6 +   1154217 --CATTCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14061631 6 +  15232693 --CATTCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311297 6 +    446445 --TATTCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4506284 6 + 123392446 --CATTCT
i micMur3.chr6             I 227 C 0
s otoGar3.GL873550          15364413 6 -  18854210 --CATTCT
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70414388 6 -  72498081 TATATT--
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      171459 98 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=403370.000000
s hg38.chr6_KI270758v1_alt     65666  79 +     76752 CACATAGGACACAATTCTGGACTTGCTGACCAGTGAGAACTTATTAAAGAAAAGGGCT---------------------CTTTCCTTCCAGAAGGCTTGG
s panTro5.chr6             142763229  79 - 175400573 CACATAGGACACAATTCTGGACTTGCTGACCAGTGAGAACTTATTAAAGAAAAAGGCT---------------------CTTTCCTTCCAGAAGGCTTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910882  79 - 173848474 CACATAGGACACAATTCTGGACTTGCTGACCAGTGAGAACTTATTAAAGAAAAAGGCT---------------------CTTTCCTTCCAGAAGGCTTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435113  79 +   2807050 CACATAGGACACAATTCTGGACTTGCTGACCAGTGAGAACTTATTAAAGAAAAGGGCT---------------------CTTTCCTTCCAGAAGGCTTGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749111  79 - 122973662 CACATAGGACACAATTCTGGACTTGCTGACCAGTGAGAACTTACTAAAGAAAAGGGCT---------------------CTTTCCTTCCGGAAGGCTTGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138688043  77 - 171630274 CACATAGGATGCAAT--AGGACTTGCTGACCCGTAAGAACTTGTAAAAGAAAATGGCT---------------------CTTTCCTTCCGGAAGGCTTAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244529  79 +   1154217 CATGTAGGATGCAATTCTGGACTTGCTGACCAGTGAGAACTTGTAAAAGAAAATGGCT---------------------CTTTCCTTCCAGAAGGCTTGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14061637  79 +  15232693 CACATAGGATGCAATTTTGGACTTGCTGACCAGTGAGAACTTGTAAAAGAAAATGGCT---------------------CTTTCCTTCCAGAAAGCTTTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311303  79 +    446445 CACATAGGATGCAATTCCGGACTTGCTGACCAGTGAGAACTTGTAAAAGAAAATGGCT---------------------CTTTCCTTCCAGAAGGCTTGG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4506290  79 + 123392446 CACACAGGACACAATTCTGGACTTGCTTACCAGTGAGAAATTATTAAAGAAAAAGGCT---------------------CTTTCCTCCCGGAAAGCTTGG
i micMur3.chr6             C 0 I 475
s proCoq1.NW_012150019v1      171557  79 +   1371726 CACACAGGACACAATTGTGGACCTGCTCACCAGTGAGAGATTATTAAAGAAAAGGGCT---------------------CTTTCCTCCCAGAAGGTTTGG
i proCoq1.NW_012150019v1   I 98 C 0
s otoGar3.GL873550          15364419  61 -  18854210 CACATAGGACACAGTTCTGGACTTGCTAACTAATGAGAAATTATTAAAGAAAAGG---------------------------------CAGAGG------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70414394 100 -  72498081 CATATAGAACACAATTCAGTACTTACTAACCAATGAGATTTTGTTTAAAAATAtgtgttgtgtgtgtgtgtgtgtgtgATTTCCCTCACAGAAGGCCTGG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=28141.000000
s hg38.chr6_KI270758v1_alt     65745 8 +     76752 GCTCCTCC
s panTro5.chr6             142763308 8 - 175400573 GTTCCTCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910961 8 - 173848474 GCTCCTCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435192 8 +   2807050 GCTCCTCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749190 8 - 122973662 GCTCCTCC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138688120 8 - 171630274 GCTCCGCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244608 8 +   1154217 GCTCCTCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14061716 8 +  15232693 GCTCCTCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311382 8 +    446445 GCTCCTCC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      171636 8 +   1371726 ACTTCTCC
i proCoq1.NW_012150019v1   C 0 I 296
s otoGar3.GL873550          15364480 1 -  18854210 -------C
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70414494 8 -  72498081 GATTCTGA
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506369 475 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=896988.000000
s hg38.chr6_KI270758v1_alt     65753 264 +     76752 TCCAGTTATTTACAATTATTCATGAGCCTTCTCCGTCCCTTGTCAAAGTCCAAGATTAGCAGTTGATTGTACACTAGAGCCTGAAGAGCAAACACGCTGAGCTATT-------AA-------AGGACTTGGACAGATTCCTGTGCATCTCCAACAGTGGTAATG-GAAGTGAGAATTCACTCTACTGCAATATTTCCCTTCAAACGCCTCCCCTCCTCCATATTTGATAACAAAAATAGTAAGAAGAGAT---TTCCCT-GTAAATGTAGCTTTAAAATTCTA--------
s panTro5.chr6             142763316 263 - 175400573 TCCAATTATTTACAATTATTCATGAGCCTTCTCCGTCCCTTGTCAAAGTCCAAGATTAGCAGCTGATTGTACACTAGAGTCTGAAGAGCAAACACGCTGAGCTATT-------AA-------AGGACTTGGACAGATTCCTGTGCATCTCCAACAGTGGTAATG-GAAGTGAGAATTCACTCTACTGCAATACTTCCCTTCAAACGCCACCCC-CCTCCATATTTGATAACAAAAATAGTAAGAAGAGAT---TTCCCC-GTAAATGTAGCTTTAAAATTATA--------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140910969 263 - 173848474 TCCAATTATTTACAATTATTCATGAGCCTTCTCCGTCCCTTGTCAAAGTCCAAGATTAGCAGCTGATTGTACACTAGAGCCTGAAGAGCAAACACGCTGAGCTATT-------AA-------AGGACTTGGACAGATTCCTGTGCATCTCCAACAGTGGTAATG-GAAGTGAGAATTCACTCTACTGCAATACTTCCCTTCAAACGCCACCCC-CCTCCATATTTGATAACAAAAATAGTAAGAAGAGAT---TTCCCC-GTAAATGTAGCTTTAAAATTATA--------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435200 252 +   2807050 TCCAATTATTTACAATTATTCATGAGCCTTCTCCATCCCTTGTCAAAGTCCAAGATTAGCAGTT------------GAGCCTGAAGAGCAAACACGCTGAGCTATT-------AA-------AGGACTTGGACAGATTCCTGTGCATCTCCAACAGTGGTAATG-GAAGTGAGAATTCACTCTACTGCAATACTTCCCTTCAAACGCCTCCTCTCCTCCATATTTGATAACAAAAATAGTAAGAAGAGAT---TTCCCC-GTAAATGTAGCTTTAAAATTATA--------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749198 264 - 122973662 TCCAATGATTTACAATTATTCATGAGCCTTCTCCGTCCCTTGTCAAAGTCCAACATTAGTAGTTGATGGTACACTAGAGCCTGAAGAGCAAACACGCTGAACTATT-------AA-------AGTACTTGAACAGATTCCTGTGCATCTCCAACAGTGGTAATG-T-AGTGAGAATTCACTCTACTGCAATACTTCCCTTCAAACGCCTCCCCTCCTCCATATTTGATAACAAAAATAGTAAGAAGAGAT---TTCCCCTGTAAATGTAGCTTTAAAATTATA--------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138688128 264 - 171630274 TCCAAAGATTTATAGTTATACATGAGCCTTCCCTGTCCCTTGACAAAGTCCAAGATTAGGAGGTGATGGTACACTAGAGCCTGAGGAGCAAACACACTGAGCTATT-------AA-------AGGACTTGAACATATTGCTGTGCATCTCCAACACTGGTAACG-GAAGTGAGAATTCTCTCTACTGCAATAGTTCCCTTCAAATGCCACCCT-CCTCCATACGGGATAACAAGAATAGTAAGAAGAGAT---CTTCACTGTAAATGTAGCTTGAAAATTATT--------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244616 264 +   1154217 TCCAGTGATTTACAGTTATACATGAGCCTTCCCTCTCCCTTGACAAAATCCAAGATTAGGAAGTGATGTTACACTAGAGCTTGAGGAGCAAACACACTGAGCTATT-------TA-------AGGACTTGAACAGATTCCTGTGTGTCTCCAACAGTGGTAAAG-GAAGTGAGAATTCACTCTATTGCAATAGTTCCCTTCAAACGCCACCCT-CCTCCATATTGGATAACAAAAACAGTAAGAAGAGAT---CTTCCCTGTAAATGTAGCTTTAAAATTATT--------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14061724 264 +  15232693 TCCAATGATTTACAGTTATACATGAGCCTTCCCTGTCCCTTGACAAAGTCCAAGATTAGGAGGTGATGGTACACTAGAGCCTGAGGAGCAAACACACTGAGCTATT-------AA-------AGGACTTGAACAGATTTCTGTGCATCTCCAACAGTGGTAATG-GAAGTGAGAATTCACTCTATTGCAATAGTTCCCTTCAAACACCACCCT-CCTCCACATTTGATAACAAAAATAAGAAGAAGAGAT---CTTCCCTGTAAATGTAGCTTTAAAATTATT--------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311390 264 +    446445 TCCAGTGATTTACGGTTATTCATGAGCCTTCCCTCTCCCTTGACAAAATCCAAGATTAGGAGGTGATGGTACACAAGAGCCTGAGGAGCAAACACATTGAGCTATT-------AA-------AGGACTTGAACAGATTCCTGTGCATCTCCAACAGTGGTAACG-GAAGTGAGAATTCACTCTACTGCAATAGTTCCCTTCAAACGCCACCCT-CCTCCATATTGGATAACAAAAATAGTAAGAAGAGAT---CTTCCCTGTAAATGTAGCTTTAAAATTATT--------
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15364481 271 -  18854210 TTCAATGGCTTACAGGTATACTTCAAACTTCTCCTAGCTTAGAAAAAACCCGAGATTAGAAGGTGATGGGACATGAGAGCCTGAAGAATGGACAAGCTGAGATATTAACTTTGAA-------AACAATTGAACAGATTTCTGTGCATTTCCAACAGTGGGAATGTGTACTGAGATTTCACTCAACTCTGACCTTTCCTTTCCATTGCCACGT--CTTCGGTATTTGATAACAAAACAACAAAAAAGAGAT---TTTCTCTTTAAATGTAGATATTACAATATT--------
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70414502 270 -  72498081 TTAAATGGTTTATAGTTCTACATCCATCCTGCCCACTCCATGGCAAACTCTAGGTTTAGAGGTTGATGG---GCATGGACCTGAAGAA-AGGCAAACTGAACTATT-------AATTTTCACAAGACTTGAGCAAATT--TGTGTATCTCCAACATTAGTAACATGTATTAAGAATTCTCTCAACTATGATTCTTCCCTTCAAACACCATCCCTCCTTCATAT--------GAAAATAGTAAGAAGAGAGATATTTCTCTTAAAATGTACCGTTAAAAATATTTATTTCAA
i canFam3.chr12            C 0 I 8
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506369 475 + 123392446 I
e proCoq1.NW_012150019v1      171644 296 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=434327.000000
s hg38.chr6_KI270758v1_alt     66017 104 +     76752 TACTTCAACACACACTCAGCATGAAA-ACAGATGAGAAACCCATGCACTTGTTTGGAGTTTTCTTGTGAGAAATAGTTGCTG--CCCACAAAGTGACTGTATTTCCC
s panTro5.chr6             142763579 104 - 175400573 TACTTCAACACACACTCAGCATGAAA-ACAGATGAGAAACTCATGCACTTGTTTGGAGTTTTCTTGTGAGAAATAGTTGCTG--CCCACAAAGAGACTCTATTTCCC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911232 104 - 173848474 TACTTCAACACACACTCAGCATGAAA-ACAGATGAGAAACTCATGCACTTGTTTGGAGTTTTCTTGTGAGAAACAGTTGCTG--CCCACAAAGAGACTCTATTTCCC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435452 104 +   2807050 TACTTCAACACACACTCAGCATGAAA-ACAGATGAGAAACCCATGCACTTGTTTGGAGTTTTCTTGTGAGAAATAGTTGCTG--CCCACAAAGACACTGTATTTCCC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749462  87 - 122973662 TACTTCAACACACACTCAGCATGAAA-ACAGATGAGAAACCCATGTGCTTGTTTGGAGTTTTCTTGTGAGAAATTGTTGCTG--CCCACA-----------------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138688392 104 - 171630274 TATTTCAACACGTACTCAGCATGAAA-ACAGATGAGAAACCCATGCACTTGTTTGGCGTTTTCTTGTGAGAAATTGTTGCTG--CCCACAAAGAGACTGTATTTCCC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244880 105 +   1154217 TACTTCGACACATATTCAGCATGGAATTTAGATGAGAAACCCATGCACTTATCTGGAGTTTTCTTGTGAGAAATTGTTGCTG--CCCTCAAAGAGTCTGTATTTCCC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14061988 104 +  15232693 TACTTCAACACATACTCATCATGAAA-ATAGATGAGAAACCTATGCACTTGTTTAGAGTTTCCTTGTGAGAAATTGTTGCTGGACCCACAAAGAGAC--TATTTCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311654 104 +    446445 TGCTTCAACACATACTCAGCATGAAA-ACAGATGAGAAATCTATGCCCTTGTTTGGAGTTTTCTTGTGAGAAATTGTTGCTG--CCCACAAAGAGACTGTATTTCCC
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      171940 103 +   1371726 TACTTCAATACA-ACTCAGCAAGAAA-ACAGAAGAGAGATGTAGGCACTTGTTTAGAGTTTTCTTGTGACAAACTGTTATTG--CCCACAGAGAGACTGCATTTCCC
i proCoq1.NW_012150019v1   I 296 I 363
s otoGar3.GL873550          15364752  95 -  18854210 TACTTCATCACATACTCAGCAAGGAA-ACAGAAGAGAGGTGCATGCACTTGCTTACAGTTTTCTTGTAACAAATTTTTGTTG--CCAACAATG---------TTCCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70414780 103 -  72498081 TATTTCAATACACATTGAGTGCTAGA-ACAGAAGAGAGAT-CATGCATTTGTTTGGAATTTTCTTGGGACAAATTGTTGCTA--CTCAAAAAGACGCTGTCTTTCCC
i canFam3.chr12            I 8 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506369 475 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=46446.000000
s hg38.chr6_KI270758v1_alt     66121 15 +     76752 CAATAGCAGCACTGG
s panTro5.chr6             142763683 15 - 175400573 CAAAAGCAGCACTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911336 15 - 173848474 CAAAAGCAGCACTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435556 15 +   2807050 CAATAGCAGCACTGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749549 14 - 122973662 -AATGGCAGCACTGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138688496 15 - 171630274 CAGTGGTAACACTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            244985 15 +   1154217 CAATGGTAGCACTGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062092 15 +  15232693 CAACGGTAACACTGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311758 15 +    446445 CAATGGTAACACTGG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15364847 15 -  18854210 TAATGGTAACTTTGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70414883 15 -  72498081 CAAAAATAACGGGAG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506369 475 + 123392446 I
e proCoq1.NW_012150019v1      172043 363 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=241747.000000
s hg38.chr6_KI270758v1_alt     66136 51 +     76752 AGGAAATCTCCCTGGACATTTTCCAGTTCTCTCACTTCACTTTCTGCCTCT
s panTro5.chr6             142763698 51 - 175400573 AGGAAATCTCCCTGGACATTTTCCAGTTCTCTCACTTCACTTTCTGCCTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911351 51 - 173848474 AGGAAATCTCCCTGGACATTTTCCAGTTCTCTCACTTCACTTTCTGCCTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435571 51 +   2807050 AGGAAATCTCCCTGGACATTTTCCAGTTCTCTCACTTCACCTTCTGCCTCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749563 51 - 122973662 AGGAAATCTCCCTGGACATTTTCCAGTTCTCTCACTTCACTTTCTGCCTCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138688511 51 - 171630274 AGGAAATCTCCCTGGACATTTTCCAGTTCGCTCATTTCACTTTCTGACTCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245000 51 +   1154217 AGGAAATCTCCCTGGACATTTTCCAGTTCGCTCATTTCACTTTCTGACTCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062107 51 +  15232693 AGGAAATCTCCCTGGACATTTTCCAGTTTGCTCATTTCACTTTCTGCCTCT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311773 51 +    446445 AGGAAATCTCCCTGGACATTTTTCAGTTCGCTCGTTTCACTTTCTGCCTCT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4506844 50 + 123392446 -AGGAAATTCCCCTGGCATTTTCCAGTTGTCTCATTTCTCTTTCTGCCTCT
i micMur3.chr6             I 475 I 455
s otoGar3.GL873550          15364862 50 -  18854210 -AGGAATTCCTTTGGGTGTCTTCCAGCTCTACCATTTCTCTTTCTGTCTCT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70414898 51 -  72498081 AGGACATTCCTTCAGACATTTTGCAGTTGTCCCATTCCTCTTTCTGCCTCT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      172043 363 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=687836.000000
s hg38.chr6_KI270758v1_alt     66187 198 +     76752 TCCTCTTTGACAGAAAGTGAAATCACACCTAGTGAAACTGACCTACTCACCATCCAAGGACAGCTTTCCTGGTGAATGTACCTAGAAGATGCTCCAGTGGAGAC---AGCAGAGGTGCC--------AACACTTCGCTGCTTATTATGCTAATAGAACATTAGCTTCCTGGGCAACATCTCTATCACAACTCGTTAAAGAAGTTACAGG
s panTro5.chr6             142763749 198 - 175400573 TCCTCTTTGACAGAAGGTGAAATCACACCTAGTGAAACTGACCTACTCACCATCCAAGGACAGCTTTCCTGGTGAATGTACCTAGAAGATGCTCCAGTGGAGAC---AGCAGAGGTGCC--------AACACTTCGCTGCTTATTATGCTAATAGAACATTAGCTTCCTGGGCAACATCTCTATCACAACTCGTTAAAGAAGTTACAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911402 198 - 173848474 TCCTCTTTGACAGAAGGTGAAATCACACCTAGTGAAACTGACCTACTCACCATCCAAGGACAGCTTTCCTGGTGAATGTACCTAGAAGATGCTCCAGTGGAGAC---AGCAGAGGTGCC--------AACACTTCGCTGCTTATTATGCTAATAGAACATTAGCTTCCTGGGCAACATCTCTATCACAACTCGTTAAAGAAGTTACAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435622 198 +   2807050 TCCTCTTTGACAGAAGGTGAAACCACACCTAGTGAAACTGACCTACTCACCATCCAAGGACAGCTTTCCTGGTGAATGTACCTAGAAGATGCTCCAGTGGAGAC---AGCAGAGGTGCC--------AACACTTCGCTGCTTATTATGCTAATAGAACATTAGCTTCCTGGGCAACATCTCTATCACAACTCGTTAAAGAAGTTACAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749614 198 - 122973662 CCCTCTTTGATAGAAGCTGAAATCACACCTAGTGAAACTGACCTACTCACTATCCGAGGACAGCTTTCCTGGTGAATGTACCTAGAAGACGCTCCAGTGGAGAC---AGCAGAGGTACC--------AACACTTCGCTGCTTATTATGCTAATAGAACATTAGCTTCCTGGGCAACATCTCTATCACAACTCGTTAAAGAAGTTACAGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138688562 196 - 171630274 CCCTCTTTGATAGAGGCTGAAATCACACCTAGTGATATTGACCTGCTCACCATCCAAGGACAGCTTTCCTGACG-ACGTACCTAGAAGACACTCCAGTGGAGAC----ACGGCGGTGCC--------AACACTTTGCTGCTTATTATGCTAATAGAAAGTTAGCTTCCTGGGCAACAACTCTACCATGACTCATTAAAGAAATTACAGG
i calJac3.chr4             C 0 I 1312
s saiBol1.JH378315            245051 194 +   1154217 CCCTC--TGATAGAGGCTGAAATCACACCCAGTGATATTGACTTACTCACCATCCAAGGACAGCTTTCCTGACG-ATGTACCTAGAAGACACTCCAGTGGAGAC----ACAGCGGTGCC--------AACACTTTGCTGCCTATTATGCTAACAGAAAGTTAGCTTCCTGGGCAACAACTCTATCACGACTCATTAAAGAAATTACAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062158 196 +  15232693 CCCTCTTTGACAGAGGATGAAATCACACCTAGTGATATTGACCTACTCACCATCCAAGGACAGCTTTCCTGATG-ATGTACCTAGAAGACACTCCAGCGGAGAT----GCAGCAGTGCC--------AACACTTTGCCGCTTATTATGCTAATACAAAGTTAGCTTCCTGGGCAACATCTCTATCATGACTCATTAAAGAAATTACAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      311824 196 +    446445 CCCTCTTTGATAAAGACTGAAATCACACCTAGTGATATTGACATACTCACCATCCAAGGACAGCTTTCCTGATG-ACATACCTAGAAGACACTCCAGTGGAGAC----GCAGCGGTGCC--------AACACTTTGCTGCTTATTGTGCTGATAGAAAGTTAGCTTCCTGGACAACAACTCTATCGTGACTCATTAAAGAAATTACATA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15364912 205 -  18854210 TCCTCTTCAAACAAACCTGGAATTAGACCTTCTGGAACTGAACTACTCGCTACCCAGTAATAGTTCTCCTGGACAAGACACTTGTAAGAGGCTGGAGTGGAGAC---AGCAGAGGTGCCTAGGACTTAAAAATTTGCTTCTTTTGTTGGTCATAGTGAGTTAGCTTCTAGGG-GCCACCTGTATCACAACTACTTAAGGTAGTTACAGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70414949 183 -  72498081 TCCTCTCTGGAAGGGGTTGAAATCATACTTAGTGAAGCTGACCTACTCTCCACACAGGGACAGCTTTCTTGGAGAACATACC-------------ACTAGAAGCCTGAGCACGTGTGCT--------GACACTT-----CTTATGGAAGTAATAGAGGCTTAGCTTCTTGGGGGGCACCTGTATCACAACTCCTTAAATGAGTTACAGA
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506894 455 + 123392446 I
e proCoq1.NW_012150019v1      172043 363 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=370596.000000
s hg38.chr6_KI270758v1_alt     66385  97 +     76752 GGTAACTGGAAAAGAATCAGGACAATTTTCATGATGAT------CTA------AGCAGAAGGACACAGATGTGCCAGCACCCTGAAGGCTAGAATAAGGATGGAAAATC
s panTro5.chr6             142763947  97 - 175400573 GGTAACTGGAAAAGAATCAGGACAATTTTCACGATGAT------CTA------AGCAGAAGGACAGACATGTGCCAGCACCCTGAAGGCTAGAATAAGGATGGAAAATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911600  97 - 173848474 GGCAACTGGAAAAGAATCAGGACAATTTTCACGATGAT------CTA------AGCAGAAGGACACACATGTGCCAGCACCCTGAAGGCTAGAATAAGGATGGAAAATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435820  97 +   2807050 GGTAACTGGAAAAGAATCAGGACAATTTTCACGATGAT------CTA------AGCAGAAGGACACAGATGTGCCAGCACCCTGAAGGCTAGAATAAGGATGGAAAATC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749812  97 - 122973662 GGTACCTGGAAAAGAATCAGGACAATTTTCACGATGAT------CTA------AGCAGAAGGACACAGACGTGCCAGCACCCTGAAGGCTAGAATAAGGATGGAAAATC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690070  94 - 171630274 GGTAATTGGAAAAGAATCGGGACAATTTTCACCATGAT------CTA------AGC---AGAACACAGATGTGTGGGCACCCTTAAGGCTAGAATTAGGATGGAAAATC
i calJac3.chr4             I 1312 C 0
s saiBol1.JH378315            245245  97 +   1154217 GGTAACTGGAAAAGAATCAGGACCATTTTCACCATGAT------CTA------AGCAGAAGAACACAGATGTGTGGGCACCCTGAAGGCTAGAATTAGGATGGAAAATC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062354  97 +  15232693 GGTAACTGGAAAAGAATCAGGACAATTTTCACCATGAT------CTA------AGCAGAAGAATACAGATGTGTGGGCACCCTGAAGGTTAGACTTAGGTTGGAAAATC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312020  97 +    446445 GGTAACTGGAAAAGAATCAGGACAATTTTCACCATGAT------CTA------AGCAGAAGAACACAGATGTGTGGGCACCCTGAAGGCTAGAATTAGGATGGAAAATC
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15365117 103 -  18854210 GGTCCTTGGAGCAGAATCAGGACAACTTGCGCTGTGATTGGAAGCTA------TGAAGATGGTCACAGATGTGTCAGCCCTCCAAAGCCTAAAATAAGGTTGAACAATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70415132 103 -  72498081 GGTATTTGGAGAAGAATCAGGACAATTTTCAGTGTAAT------CTAAACCTGAGCAGATGGTCACAGATGTGCCAGTGCCCCGAAGGCTAAAATAAGGACAGAGGGTC
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506894 455 + 123392446 I
e proCoq1.NW_012150019v1      172043 363 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=175444.000000
s hg38.chr6_KI270758v1_alt     66482 38 +     76752 CCACAGAAGGTGATTCCAGTAAGAGAATAGATGTGGGA
s panTro5.chr6             142764044 38 - 175400573 CCACAGAAGGTGATTCCAGTAACAGAATAGATGTGGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911697 38 - 173848474 CCACAGAAGGTGATTCCAGTAAGAGAATAGATGTGGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435917 38 +   2807050 CCACAGAAGGTGATTCCAGTAAGAGAATAGATGTGGGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749909 38 - 122973662 CCACAGAAGGTGATTCCAGTAAGAGAATAGATGTGGGA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690164 35 - 171630274 CCACAG---GTGATTCCAGTAGGGGAATAGATGTGGGA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245342 35 +   1154217 CCACAG---GTGATTCCAGTAAGGGAATAGATGTGGGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062451 35 +  15232693 CCACAG---GTGATTCCAGTAAGGGAATAGATGTGGGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312117 38 +    446445 CCACAGAATGTGATTTCAGTAAGGGAATAGATGTGGGA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      172406 38 +   1371726 CCACAGAAGGTGATTCCAGTGAAGGAATAGATGTGGGA
i proCoq1.NW_012150019v1   I 363 I 149
s otoGar3.GL873550          15365220 35 -  18854210 CTAC---AGGTTATTGAAGTAAAGGAATAGACGTGGGA
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70415235 38 -  72498081 TCATAGAAGGTAAGTCCAGTAAAGGAACAGATGTGGGA
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506894 455 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=461217.000000
s hg38.chr6_KI270758v1_alt     66520 138 +     76752 CTAATCGACCTCGTTGTGAAAAGACACGTCTCCAGCCTTGCTGTCCTGGAAA---CCTTCT--------AGGGGGACAGG-GAGGCTCC--TG--ACAGAGTCTCTGGGCAGGAAGTGAGAGCCACGACCCTTCCTTCTTCACATGTCACCATG
s panTro5.chr6             142764082 138 - 175400573 CTAATCGACCTCATTGTGAAAAGACACGTCTCCAGCCTTGCTGTCCTGGAAA---CCTTCT--------AGGGGGACAGG-GAGGCTCC--TG--ACAGAGTCTCTGGGCAGGAAGTGAGAGCCATGACCCTTCCTTCTTCACATGTCACCATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911735 138 - 173848474 CTAATCGACCTCATTGTGAAAAGACACGTCTCCAGCCTTGCTGTCCTGGAAA---CCTTCT--------AGGGGGACAGG-GAGGCTCC--TG--ACAGAGTCTCTGGGCAGGAAGTGAGAGCCATGACCCTTCCTTCTTCACATGTCACCATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2435955 138 +   2807050 CTAATCGACCTCGTTGTGAAAAGACACGTCTCCAGCCTTGCTGTCCTGGAAA---CCTTCT--------AGGGGGACAGG-GAGGCTCC--TG--ACAGAGTCTCTGGGCAGGAAGTGAGAGCCATGACCCTTCCTTCTTCACATGTCACCATG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45749947 146 - 122973662 CTAATCGACCTTGTTGTGAAAAGACACATCTCCAGCCTTGCTGTCCTGGAAA---CCTTCTGTCCTATGGTGGGGAGAGG-GAGGCTCC--TG--ACAGAGTCTCTGGGCAGGAAGTGAGAGCCATGACCCTTCCTTCTTCACATGTCACCATG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690199 146 - 171630274 ATGATCAACCTTGTTGTAAAAGGCCACACCTCTAGCCTTGCTGTCCTGGAAA---TCTTCTATCTTAT-GCAGGGATAGGGTAGGCTCC--TG--ACAGAGTCTCTGTGCAGGAAGTGAGAGCCATGACCCTTCCTTCGTCGCATGCATCCATG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245377 149 +   1154217 ATGATCAACTTTGTGGTAAAAGGACACATCTCCAGCCTTGCTGTCCTGGAAACCTTCTTCTATCCTAT-GGGGAGATAGGGGAGGCTCC--TG--ACAGAGTCTCTGGGCAGGAAGTTAGAGCCATGACCCTTCCTTCTTCACATGCCACCATG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062486 146 +  15232693 ATGATCAACCTTGTTGTAAAAGACCACATCTCCAGCCTTGCTGTCCTGGAAA---TCTTCTATCCTAT-GGGGGGATAGGTGAGGCTCC--TG--ACAGAGTCTCTGGGCAGGAAGTGAGAGCCGTGACCCTTCCTTCTTCACATGCCACCATG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312155 146 +    446445 ATGATCAACCTTGCTGTAAAAGTCCACATCTCCAGCATTGCTGTCCTGGAAA---CCTTCTATCCTAT-GGGGGGGTAGGAGAGGCTCC--TG--ACAGAGTCTCTGGGCAGGAAGTGAGAGCCATGACCCTTCGTTTGTCACATGCATCCATG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15365255 141 -  18854210 CTCACTCACCATGTTGTAAAAGGACACATC-CCAGCTTCCCAGTTCAGGAAA---ACTCCTATTCTGT-GGGGGT------GCTGCCTC--AGCCACAGAGATTCTGACTGGGAGGTAAAAGCCATGACTTCCCCTTCCTTGTATGTCACCACC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70415273 139 -  72498081 CCCATCAGCCATGTTGTAAAATGACACATCTCCATCTTCCCAGTCCAAGAAA---ACTCCTATCCTTT-GAGGAT------GCTGCTTCAGTG--ACAGAGACTCTGG---GGAGGTAGGAAACTTGACTTCTCCTTTCTCATATGCTACCACC
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4506894 455 + 123392446 I
e proCoq1.NW_012150019v1      172444 149 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=44198.000000
s hg38.chr6_KI270758v1_alt     66658 8 +     76752 CAGAAATT
s panTro5.chr6             142764220 8 - 175400573 CAGAAATT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911873 8 - 173848474 CAGAAATT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436093 8 +   2807050 CAGAAATT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750093 8 - 122973662 CAGAAATT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690345 8 - 171630274 CAGAAATT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245526 8 +   1154217 CAGAAATT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062632 8 +  15232693 CAGAAATT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312301 8 +    446445 CAGAAATT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4507349 8 + 123392446 CAGAAGTC
i micMur3.chr6             I 455 C 0
s otoGar3.GL873550          15365396 8 -  18854210 CAGAAATT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70415412 8 -  72498081 CAGATATT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      172444 149 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=145350.000000
s hg38.chr6_KI270758v1_alt     66666 22 +     76752 CTTCTCTGGACTTTCTACAAAC
s panTro5.chr6             142764228 22 - 175400573 CTTCTCTGGACTTTCTACAAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911881 22 - 173848474 CTTCTCTGGACTTTCTACAAAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436101 22 +   2807050 CTTCTCTGGACTTTCTACAAAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750101 22 - 122973662 CTTCTCTGGACTTTCTACAGAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690353 20 - 171630274 CTTCTCTGGACTT--TACAAAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245534 22 +   1154217 CTTCTCTGGACTTTCTACAAAC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062640 22 +  15232693 CTTCTCCGGACTTTCTACAAAC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312309 22 +    446445 CTTCTCTGGACTTTCTACAAAC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4507357 22 + 123392446 CTTCTCTGGACTTTCTCCAAAC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      172593 22 +   1371726 CTTCTCTGGACTTTCTACAAAC
i proCoq1.NW_012150019v1   I 149 I 14
s otoGar3.GL873550          15365404 22 -  18854210 CTGCTCTGGACTTTCTACAAAC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70415420 22 -  72498081 CTTCTCTGGACCTTCTACAAAC
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=100597.000000
s hg38.chr6_KI270758v1_alt     66688 21 +     76752 CACCACTCTCTCTTCATTGTG
s panTro5.chr6             142764250 21 - 175400573 CACCACTCTCTCTTCATTGTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911903 21 - 173848474 CACCACTCTCTCTTCATTGTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436123 21 +   2807050 CACCACTCTCTCTTCATTGCG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750123 21 - 122973662 CACCACTCTCTCTTCATTGTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690373 21 - 171630274 CACCCCCCTCTCTTCGTTGTG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245556 21 +   1154217 CACCCCTCTCTCTTCATCGTG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062662 21 +  15232693 CACCCCTCTCTCTTCGTTGTG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312331 21 +    446445 CACCCCTCTCTCTTCATTGCG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4507379 21 + 123392446 CACCTCTCTCTCTTCACTGTA
i micMur3.chr6             C 0 I 1
s otoGar3.GL873550          15365426 21 -  18854210 CATCCATCTCTCTTCTTTGTA
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70415442 21 -  72498081 CACCCCTCTCTTCTTACTGTA
i canFam3.chr12            C 0 I 1
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      172615 14 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=463524.000000
s hg38.chr6_KI270758v1_alt     66709 80 +     76752 CTGAACAAACACCCAGAGCTCATCTCATTCCTGGTCCAACTTCTGTCCCCATTATTTACTTCTACCTCCCAGTAATGTCT
s panTro5.chr6             142764271 79 - 175400573 CTGAACAAACACCCAGAGCTCATCTCGTTCCTGGTCCAACTTCTGT-CCCATTATTTACTTCTACCTCCCAGTAATGTCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140911924 79 - 173848474 CTGAACAAACACCCAGAGCTCATCTCGTTCCTGGTCCAACTTCTGT-CCCATTATTTACTTCTACCTCCCAGTAATGTCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436144 80 +   2807050 CTGAACAAACACCCAGAGCTCATCTCGTTCCTGGTCCAACTTCTGTCCCCATTATTTACTTCTACCTCCCAGTAATGTCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750144 79 - 122973662 CTGAACAAACACCCAGAGCTCATCTCATTCCTGGTCCAACTTCTGTCCCCATTATTTACTTCTACCTCCCAGTAATGTC-
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690394 79 - 171630274 CTGAATGAACACCCAGAGTTCATCTTGTTCCTGGTCCAACTTCTGTCCCCGTTGTTTACTTCTACCTCCCAGTAACGTC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245577 79 +   1154217 CTGAACAAACACCCAGAGTTCATCTTGTTCCTGGTCCAACTTCTGTTCCCATTATTTACTTCTACCTCCCAGTAATGTC-
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062683 79 +  15232693 CTGAACAAACACCCAGAGTTCATCTTATTCCTGGTCCAACTTCTGTTCCCGTTATTTACTTCTACCTCCCAGTAATGTC-
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312352 79 +    446445 CTGAACAAACACCCAGAGTTCATCTTGTTCCTGGTCCAACTTCTGTCCCCATTATTTACTTCTACCTCCCAGTAACGTC-
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4507401 79 + 123392446 CTGAGCAAACACCCAGAGCCCATCTCGTTCCTGGTCCAACGTCTGTCCCCA-TATTTACTTCTACCTCCCAGTACTGTCT
i micMur3.chr6             I 1 I 21
s proCoq1.NW_012150019v1      172629 79 +   1371726 CTGAGCAAACACCCAGAGCCCATCTCGTTCCTGGTCCAACGTCTGTCCCCA-TATTTACTTCTACCTCCCAATAATGTCT
i proCoq1.NW_012150019v1   I 14 I 111
s otoGar3.GL873550          15365448 79 -  18854210 TTAAGCAAACACCCAGAGCCCATCCTGTTCCTGGTCCAACATCTGTTCCTG-TATTTACTTCTACCTCCCAGTAATGTCT
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70415464 79 -  72498081 TTGAGCAAACACCCACAGCCCATTTATTTACAGGTCCAGCTACTGTCCCCA-TATTGACTTGTACCTCCCAGTAATGTCT
i canFam3.chr12            I 1 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=48278.000000
s hg38.chr6_KI270758v1_alt     66789 38 +     76752 GTCTCCCCTGTGGTAAAGTAATGTCTCCCCTGTGGTAA----------
s panTro5.chr6             142764350 38 - 175400573 GTCTCCCCTGTGGTAAAGTAATGTCTCCCCTGTGGTAA----------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140912003 38 - 173848474 GTCTCCCCTCTGGTAAAGTAATGTCTCCCCTGTGGTAA----------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436224 38 +   2807050 GTCTCCCCTGTGGTAAAGTAATGTCTCCCCTGTGGTAA----------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750223 17 - 122973662 ---------------------TGTCTCCCCTGTGGTAA----------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690473 17 - 171630274 ---------------------TGTCTCCCCTGTAGTAA----------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245656 17 +   1154217 ---------------------TGTCTCCCCTGCGGTAA----------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062762 17 +  15232693 ---------------------TGTCTCCCCTGTGGTAA----------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312431 17 +    446445 ---------------------TGTCTCCCCTGTGGTAA----------
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15365527 10 -  18854210 ----------------------------CCCGTGGTAA----------
i otoGar3.GL873550         C 0 I 11
s canFam3.chr12             70415543 21 -  72498081 ---------------------------TCCTGTATTAAAGCAATTCCG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4507480 21 + 123392446 I
e proCoq1.NW_012150019v1      172708 111 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=353543.000000
s hg38.chr6_KI270758v1_alt     66827  92 +     76752 ACCCAGAACACTGAAGATGGTTTCGGATTCCCCTTGTCCTTGGTGTGTGG-GGGCATCCCAGTTC-GGGGAACATTCTCTGTTGAAGAAGT-------------------------------------GTA
s panTro5.chr6             142764388  92 - 175400573 ACCCAGAACACTGAAGATGGTTTTGGATTCCCCTTGTCCTTGGTGTGTGG-GGGCATCCCAGTTC-GGGGAACATTCTCTGTTGAAGAAGT-------------------------------------GTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140912041  92 - 173848474 ACCCAGAACACTGAAGATGGTTTCGGATTCCCCTTGTCCTTGGTGTGTGG-GGGCATCCCAGTTC-GGGGAACATTCTCTGTTGAAGAAGT-------------------------------------GTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436262  92 +   2807050 ACCCAGAACACTGAAGATGGTTTCGGATTCCCCTTGTCCTTGGTGTGTGG-GGGCATCCCAGTTC-GGGGAACATTCTCTGTTGAAGAAGT-------------------------------------GTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750240  93 - 122973662 ACCCAGAACACTGAAGATGGTTTCGGATTCCCCTTGTCCCTGGTGTGTGG-GGGCATCACAGTTCTGGGGAACATTCTCTGTTGAAGAAGT-------------------------------------GTA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690490  93 - 171630274 ACCCAGAAAACTGAAGATGGTTTCAGATTCCCCTTGTCCTTAGTGTGTGG-GGGCTTTACAGTTCTGGAGAGCATTCTTTATTGAAGAAAT-------------------------------------GTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245673  90 +   1154217 ACCCAGAAAACTGAA----GTTTCAGATTCCCCTTGTCCTTAGTGTGGGGAGGGTCTTACAGTTCCGAAGAACATTCTTTATTGAAGAAAT-------------------------------------GTA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062779  93 +  15232693 ACCCAGAAAACTGAAGATGGTTTCAGATTCCCCTTGTCCTTAGTGCGTGG-GGGACTTACAGTTCTGGAGAACATTCTTTATTGAAGAAAT-------------------------------------GTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312448 130 +    446445 ACCCAGAAAACTGAAGATGGTTTCACATTCCCCTTGTCCTTAGTGTGTGG-GAGCTTTACAGTTCTGGAGAGCATTCTTTATTGAAGAAATGTATCttctttttttttttttttttCCTTTAAAGCCAGTA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4507501  92 + 123392446 ACCCAGAACGCTGAGGAAGGTTCCAGATTCTCCTGGTCCTTGGCGGGTTG-GG-CATCACAGTTCCGAGGGACGTTCCCTGTTGAAGAAGC-------------------------------------ATG
i micMur3.chr6             I 21 C 0
s otoGar3.GL873550          15365548  62 -  18854210 -CCCAGAACACTGAAGATGGTTTCAGATTCTCCTGGCTCTTGGTGTGATA-AA------------------------------GAAGAAAC-------------------------------------ACA
i otoGar3.GL873550         I 11 C 0
s canFam3.chr12             70415564  93 -  72498081 ACCCAGAACACTGAAGACAGCTTCACATTCCTCTTGTCCTTGGCATACTG-AGGCATCACAGTTCTGAGGAACATTTTCCATTAAAGAAAC-------------------------------------TTG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      172708 111 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=363247.000000
s hg38.chr6_KI270758v1_alt     66919 67 +     76752 TCTTCTACCCTCAGATCGGATGAGGTTGGGATGAGCTGCATCTGGATCCAGAGAAACAGCCACTGCA
s panTro5.chr6             142764480 67 - 175400573 TCTTCTACCCTCAGATCGGATGAGGTTGGGATGAGCTGCATCTGGATCCAGAGAAACAGCCACTGCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140912133 67 - 173848474 TCTTCTACCCTCAGATCGGATGAGGTTGGGATGAGCTGCATCTGGATCCAGAGAAACAGCCACTGCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436354 67 +   2807050 TCTTCTACCCTCAGATCGGATGAGGTTGGGATGAGCTGCATCTGGATCCAGAGAAACAGCCACTGCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750333 67 - 122973662 TCTTCTACCCTCAGATCGGTTGAGGTTGGGATGAGCTGCATCTGGATCCAGAGAAACAGCCATTGCA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690583 63 - 171630274 TCTTCTACCCTC----AGGATGAGGTCGGGATGAGCTGCATCTGGATCCAGAGATACAGCCTCTGCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245763 67 +   1154217 TCTTCTACCCTCAGATAGGATGAGGTCAGGATGAGCTGCATCTGGATCGAGAGATACAGCCACTGCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062872 67 +  15232693 TCTTCTACCCTCAGATAGGATGAGGTCGGGATGAGCTGCATCTGGATCCAGAGATACAGCCGCTGCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312578 67 +    446445 TCTTCTACCCTTAGATAGGATGAGGTCGGGATGAGCTGCATCTGGATCCAGAGATACAGCCACTGCA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4507593 66 + 123392446 TCTTCTACTCTCAG-TATGATGAGCTTGGGATGAGCCGTGTCTGGATCTGGAGAAGCAGCCACTGCA
i micMur3.chr6             C 0 I 348
s proCoq1.NW_012150019v1      172819 67 +   1371726 TCTTCTAATCTCAGATACGATGAGTTTGGGAAGAGCTGTGTCTGGATCCAGAGAAGCAGCCACCGCA
i proCoq1.NW_012150019v1   I 111 I 50
s otoGar3.GL873550          15365610 57 -  18854210 TCTTCTGTCCTCAGATATGGTGAGCTTGGAATGAGCTGTGTCAGAATCCAG----------ACTGCA
i otoGar3.GL873550         C 0 I 2
s canFam3.chr12             70415657 67 -  72498081 TTTTCTATTCTCAGATAGGATGAGATTGGGATGAGCGCTGTCTGGATCCAGAGTAATAGCAGCTGCA
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=27583.000000
s hg38.chr6_KI270758v1_alt     66986 29 +     76752 TGTATAGTTGG---AAAAAAAAAA----------AAAAAAGG--------------
s panTro5.chr6             142764547 28 - 175400573 TGTATAGTTGG----AAAAAAAAA----------AAAAAAGG--------------
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140912200 32 - 173848474 TGTATAGTTGGaaaaaaaaaaaaa----------aaaaaaGG--------------
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436421 29 +   2807050 TGTATAGTTGG---AAAAAAAAAA----------AAAAAAGG--------------
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750400 26 - 122973662 TGTATAGTTGG------AAAAAAA----------AAAAAAGG--------------
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690646 19 - 171630274 CGTATAGTTGG-----------------------AAGAAAGG--------------
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245830 19 +   1154217 CATATAGTTGG-----------------------AAGAAAGG--------------
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062939 19 +  15232693 CAGATAGCAAG-----------------------AAAAAAAG--------------
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312645 19 +    446445 CGTATAGTTGG-----------------------AAGAAAGG--------------
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15365669 39 -  18854210 TATGGGGGTGG---GGAGGAAGAGGTCAGTCCACAATAGAGA--------------
i otoGar3.GL873550         I 2 I 12
s canFam3.chr12             70415724 34 -  72498081 GGTGTAGGGGG------------G----------AATACAGGTCATATCTCAGTGG
i canFam3.chr12            C 0 I 4
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4507659 348 + 123392446 I
e proCoq1.NW_012150019v1      172886 50 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=372640.000000
s hg38.chr6_KI270758v1_alt     67015 86 +     76752 AGGAAAGCTGCAAATACTGGGAAGGCAGAATGGAGAAAAACAAGAGGG---AGAAAACTGGAAGGTTAGGTAAAAC----TGTGTTCCGTCCT
s panTro5.chr6             142764575 89 - 175400573 AGGAAAGCTGCAAATACTGGGAAGGCAGAATGGAGAAAAACAAGAGGGAGAAGAAAAGTGGAAGGTTAGGTAAAAC----TGCGTTCCGTCCT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140912232 89 - 173848474 AGGAAAGCTGCAAATACTGGGAAGGCAGAATGGAGAAAAACAAGAGGGAGAAGAAAAGTGGAAGGTTAGGTAAAAC----TGCGTTCCGTCCT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436450 86 +   2807050 AGGAAAGCTGCAAATACTGGGAAGGCAGAATGGAGAAAAACAAGAGGG---GGAAAAGTGGAAGGTTAGGTAAAAC----TGTGTTCCGTCCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750426 86 - 122973662 AGGAAAGCTGCAAATACTGGGAAGGCAGAAAGGAGAAAAACAAGAGGG---AGAAAAGTGGAAGGTTAGGTAAAAC----TGTATTCCGTCCT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690665 85 - 171630274 AGGAAAGCTGCAAATACTGGGAAGGCAG-GTGGAGAAAAACAAGAAGG---AGAAAAGTGAATGGTTAGGTAAAAC----TGTCTTCCATCCT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245849 85 +   1154217 GGGAAAGCTGCAAATACTGGGAAGGCAG-GTGGAGAAAAACAAGAAGG---AGAAAAGTGAATGGTTAGGTCAAAC----TGTGTTCCATCCT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14062958 85 +  15232693 AGGAAAGCTGCAAATACTGGGAAGGCAG-GTGGAAAAAAACAAGAAGG---AGAAAAATGAATGGTTAGGTAAAAC----TGAGTTCCATCCC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312664 85 +    446445 AGGAAAGCTGCAAATACTGGGAAGGCAG-GTGGAGAAAAACAAGAAGG---AGAAAAGTGAATGGTTAGGTAAAAC----TGTGTTCCATCCT
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      172936 90 +   1371726 AGGAAAGATGCAAACACTGGAAAAGCAGAATGGAAGAAAACAAGAGAG---AGGAGAATGGAAGAGTAGGTAAAGCAATTTATGTTCTATCCT
i proCoq1.NW_012150019v1   I 50 C 0
s otoGar3.GL873550          15365720 90 -  18854210 AGGAAAGATGCAAATATTAGAAGAGAAAAATGGAAGAAAACAAGAGGC---AGAAAAATGGAAGAGTGAGTAAAACAATTTATATTCTGTCCT
i otoGar3.GL873550         I 12 C 0
s canFam3.chr12             70415762 90 -  72498081 AGGAAAGATGCAAATATAGGGAAAGGAGAATGAAAGAAAATAGGAGGG---AGAGCCACAGAGGAGGAGGTAAAACAATTTATGTTCTGTCTT
i canFam3.chr12            I 4 I 24
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4507659 348 + 123392446 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=448470.000000
s hg38.chr6_KI270758v1_alt     67101 113 +     76752 AGGAGACACACGATGTGTAAGTCCTAGAAGGCTAGGGTTGGGCAAGATCTTCAGTAACCATCTATTCCAGCCAGGCTAGGACTGTCTAGCCAGGATGGCTGTCACACCTGAAA
s panTro5.chr6             142764664 113 - 175400573 AGGAGACATATGATGTGTAAGTCCTAGAAGGCTAGGGTTGGACAGGATCTTCAGTAACCATCTATTCCAGCCAGGCTAGGACTGTCTAGCCAGGATGGCTGTCACACCTGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140912321 113 - 173848474 AGGAGACACACGATGTGTAAGTCCTAGAAGGCTAGGGTTGGACAGGATCTTCAGTAACCATCTATTCCAGCCAGGCTAGGACTGTCTAGCCAGGATGGCTGTCACACCTGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436536 113 +   2807050 AGGAGACACACGATGTGTAAGTCCTAGAAGGCTAGGGTTGGACAGGATCTTCAGTAACCATCTATTCCAGCCAGGCTAGGACTGTCTAGCCAGGATGGCTGTCACACCTGAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750512 113 - 122973662 AGGAGACACACGATGTGTAAGTCCTAGAAGGCTAGGGTCGGACAGGATCTTCAGTAACCATCTATTCCAGACAGGCTAGGACTGTCTAGCCAGGACGGCTGTCACACCTGAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690750  99 - 171630274 AGGGGACACAAGATGTGTAAGTCCTAGAAGGCTAGGGTTGGACAGAATCTTCGGTAACCATCTATTCCAGACAGGCTG--------------GGATGACTGTCACATCTGAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            245934 113 +   1154217 AGGAGACACAAGATGTGTAAGGCCTAGAAGGCTAGGGTTGGACAGAATCTTCAGTAACCATCTATCCCAGACAGACTGGGACTGTCTGGCCAGGATGACTGTCACATCTGAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063043 113 +  15232693 AGGAGACACAAGATGTGTAagtcctagaaggctagggttggacagaatcttcagtaatcatctattccaGACAGGCTGGGACTGTCTGGCCAGGATGACTGTCACATTTGAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312749 113 +    446445 AGGAGACACAAGATGTGTAAGTCCTAGAAGGCTAGGGTTGGACAGAATCTTCAGTAACCATCTATTCCAGACAGGCTGGGACTGTCTGGCCAGGATGACTGTCACATCTGACA
i aotNan1.NW_018508875v1   C 0 C 0
s proCoq1.NW_012150019v1      173026 113 +   1371726 AGAAGACACAGGATGTGTAAATCACAGCAGCCCGGGGGTGGATAGGACCCTAGGTGACCATCTGTTCCAGATAGGCTGAGACTATCTAGCCAGCATGGCTGTCACACCTGAAA
i proCoq1.NW_012150019v1   C 0 I 113
s otoGar3.GL873550          15365810 113 -  18854210 AGGAAACACATGGTGTATAAATTACAGAAGCAGAGGGTTGGACAGGACCTTAGGTAATCCTCTTTTTCTGATAGGCTGAGACTATGTAGACAGAAGGGTGGTTGCATCTGGAA
i otoGar3.GL873550         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4507659 348 + 123392446 I
e canFam3.chr12             70415852  24 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=301700.000000
s hg38.chr6_KI270758v1_alt     67214 93 +     76752 GTCTTCCAGGGTAAGGT-TTTCAGGATGGGGTCCTGCCTATTC---TTCAAACGCCTGTTACGTTATTGCTTGTTCTTAA-AATTAAGTCCTATAGTA
s panTro5.chr6             142764777 93 - 175400573 GTCTTCCAGGGTAAGGT-TTTCAGGATGGGGTCCTGCCTATTC---TTCAAACGCCTGTTACGTTATTGCTTGTTCTTAA-AATTAAGTCCTATAGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140912434 93 - 173848474 GTCTTCCAGGGTAAGGT-TTTCAGGATGGGGTCCTGCCTATTC---TTCAAACGCCTGTTACGTTATTGCTTGTTCTTAA-AATTAAGTCCTATAGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436649 93 +   2807050 GTCTTCCAGGGTAAGGT-TTTCAGGATGGGGTCCTGCCTATTC---TTCAAACGCCTGTTACGTTATTGCTTGTTCTTAA-AATTAAGTCCTATAGTA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750625 93 - 122973662 CACTTCCAGGGTGAGGT-TTTCAGGATGGGGTCCTCCCTATTC---TTCAAATGCCGGTTACTTTATTGCTTGTTCTTAA-ACTTAAGTCCTATAGTA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690849 93 - 171630274 GTCTTCCAGGGTCAGGT-TTTCAGGATGGGGTCCTCCCTATTC---TCCAAATGCCTGTTACTTTATTGCTTGTTCTTAA-AATTAAATCTTATAGTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246047 93 +   1154217 ATCTTCCAGGGTCAGGA-TTTCAGGATGGAGTCCTCCCTGCTC---TTCAAATTCCTGTTACTTTATTGCTTGTTCTTAA-AATTAAATCTTATAATA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063156 93 +  15232693 ATCTTCCAGGGTCAGGT-TTTCAGGATGGGGTCCTCCCTATTC---TTCAAATTCCTGTTACTTTATTCCTTGTTCTTAA-AATTAAATCTTATAGTA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312862 93 +    446445 ATCTTCCAGGGTCAGGT-TTTCAGGATGGGGTCCTCCCTATTC---TTCAAATGCCTGTTACTTTATTGCTTGTTCTTAA-AATTAAATCTTACAGTA
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15365923 96 -  18854210 -ACCCCCAGGGTCGTTTACTTCACGATGAGGT-CTCTCTGTTCTTGTTCAAATGCCTGGTACTTTACTGCTTGCTCTTAATAACTGAGTCCTGTCATT
i otoGar3.GL873550         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4507659 348 + 123392446 I
e proCoq1.NW_012150019v1      173139 113 +   1371726 I
e canFam3.chr12             70415852 24 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=77293.000000
s hg38.chr6_KI270758v1_alt     67307 18 +     76752 TCTCCAGTCATGGTGTGT
s panTro5.chr6             142764870 18 - 175400573 TCACCAGTCATGGTGTGT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140912527 18 - 173848474 TCACCAGTCATGGTGTGT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436742 18 +   2807050 TCTCCAGTCATGGTGTGT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750718 18 - 122973662 TCTCCAGTCATGGTGTGT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690942 18 - 171630274 TCTCCAGTCATGGTGTGT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246140 18 +   1154217 TCTCCAGTCATGGTGTGT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063249 18 +  15232693 TCTCCAGTCATGGTGTGT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312955 18 +    446445 TCTCCAGTCATGGTGTGT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4508007 18 + 123392446 TCTCCACTCATGGAGGGC
i micMur3.chr6             I 348 C 0
s otoGar3.GL873550          15366019 18 -  18854210 TCTTCATTCATGGTGGGC
i otoGar3.GL873550         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      173139 113 +   1371726 I
e canFam3.chr12             70415852 24 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1706391.000000
s hg38.chr6_KI270758v1_alt     67325 385 +     76752 CCACTTTCATTTAAGCCTCTTCATTTTCATTTTCTGTGGGTTTATGTAATAACTGGGCCATCCACTTCTCATACACCTTTATTATATTTCTAGTGATTGAAATCCc------------------aggccttgtagtcaaaaagatctgaatcttgataattgctctttctttagtag----------------------ctctgatcttggtgacgttaccttgcttctttcaggcacacctaactctcataataatgcaaataattatggcattcagcacaggactattgtgagaaataaatgagatagcgtatagggaacttaatactatgactTCTCTGTGATGAACACTTGGTTCATTTTAGCTTCCAATATTTATAGTAACACTAATAGCAGAGGTGATAGTAGCAATAGTACTAATACT
s panTro5.chr6             142764888 382 - 175400573 CCACTTTCATTTAAGCCTCTTCATTTTCATTTTCTGTGGGTTTATGTAATAACTGGGCCATCCACTTCTCATACACATTTATTATATTTCTAGTGATTGAAATCCc------------------aggccttgtagtcaaaaagatctgaatcttgataattgctctttctttagtag----------------------ctctgatcttggtgacgttaccttgcttctttcaggcacacctaactctcataataatgcaaataattatggcattcagcacaggactattgtgagaaataaatgagatagcgtatagggaacttaatactatgactTCTCTGTGATGAACACTTGGTTCATTTTAGCTTCCaatatttatagtaacactaatagcagaggtga---tagcaatagtactaatact
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140912545 382 - 173848474 CCACTTTCATTTAAGCCTCTTCATTTTCATTTTCTGTGGGTTTATGTAATAACTGGGCCATCCACTTCTCATACACCTTTATTATATTTCTAGTGATTGAAATCCc------------------aggccttgtagtcaaaaagatctgaatcttgataattgctctttctttagtag----------------------ctctgatcttggtgacgttaccttgcttctttcaggcacacctaactctcataacaatgcaaataattatggcgttcagcacaggactattgtgagaaataaatgagatagcgtatagggaacttaatactatgactTCTCTGTGATGAACACTTGGTTCATTTTAGCTTCCaatatttatagtaacactaatagcagaggtga---tagcaatagtactaatact
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2436760 385 +   2807050 CCACTTTCATTTAAGCCTCTTCATTTTCATTTTCTGTGGGTTTATGTAATAACTGGGCCATCCACTTCTCATACACCTTTATTATATTTCTAGTGATTGAAATCCc------------------aggccttgtagtcaaaaagatctgaatcttgataattgctctttctttagtag----------------------ctctgatcttggtgacgttaccttgcttctttcaggcacacctaactctcataataatgcaaataattatggcattcagcacaggactattgtgagaaataaatgagatagcgtatagggaacttaatactatgactTCTCTGTGATGAACACTTGGTTCATTTTAGCTTCCaatatttatagtaacactaatagcagaggtgatagtagcaatagtactaataCT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45750736 382 - 122973662 CCACTTTCATTTAAGCCTCTTCATTTTCATTTTCTGTGGGTTTATGTAATAACTGGACCA--CACTTCTCATACACCTTTATTATATTTCTAGTGATTGAAATCCC------------------Aggccttgtagtcaaaaagatctgaatcttggtaattgctcttcccttagtcg----------------------ctctgatcttggtgatgttaccttgcttctttcaggcacacctaactctcataataaggcaaataactatgacattcagcac-ggactattgtgagaaataaatgagatagcgtatacggaaCTTAATGCTATGACTTCTCTGTGATGAACACTTGGTTCATTTTAGCTTCCAATATTTATAGTAACACTAATAGCAGAGGTGATAGTAGCAATAGTACTAATACT
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138690960 385 - 171630274 CCACTTTCATTTGAGCCTCTTCATTTTCATTTTCTCTGGGTTTATGTAATAACTGGGCCATCCACTTCTCATACACCTTTATTATATTTCTAGTGATTGAAATCCC------------------AGGCCTTGTAGTCAAAAAGATCTGAATCTTGATCATTGCTCTTTCCTTAATAG----------------------CTCTGATCTTGGTGACATTATCTTGCTTCTTTCAGGCACACTGAACTCTCATAATGATGCAAATAATTATAATACTCAGCACAGGACTATCATGAGAAATAAGTAAGATAGTATACAGAGAACATAATACTATGATTTCTCCATGATGAACATTTGGTTAATTTTAGCTTCCAATACTTAGAGTAACACTAACAGCAGAGGAGATCATAGCAATAGTACTAATACT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246158 340 +   1154217 CCACTGTCATTTGAGCCTCTTCGTTTTCATTTTCTGTGGGTTTACGTAATAAGTGGGCCATCCACTTCTCATACACCTTTATTATATTTCTAGTGATTGAAATCCc------------------aggccttgtagtcaaaaagatctgaatcttgataattgctctttccttaatag----------------------ctctgatcttggtgacattatcttccttctttcaggcacacttaattctcataatgatgcaaataattataatact-----caggactatcatgagaaataaatgagatagtatacacagaacgTAATACTATGATTTCTCCATGATGAATACTTGGTTCATTT----------------------------------------TCATAGCAATAGTGCTAATACT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063267 384 +  15232693 CCACTGTCATTTGAGCCTCTTCATTTTCATTTTCTGTGGGTTTATGTAATAACTGGTCCATCCACTTCTCATACGCCTTTATTATATTTCTAGTGATTGAAATCCc------------------aggccttatagtcaaaaagatctgaatcttgataattgctctttccttaatag----------------------ctctgatcttggtgacattatcttgcttctttcgggcacacttaactctcataatgatgcaaataattataatactcagcaca-gactatcatgagaaataaatgagatagtatacagagaacataatactatgATTTCTCCATGATGAACATTTGGTTCATTTTAGCTTCCAATATTTATAGTAACACTAACAGCAGAGGAGATCACAGCAATAGTACTAATACT
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      312973 385 +    446445 CTGCTGTCATTTGAGCCTCTTCATTTTCATTTTCTGTGGGTTTATGTAATAACTGGGCCATCCACTTCTCATATACCTTTATTATATTTCTAGTGATTGAAATCCc------------------aggccttgtagtcaaaaagatctgaatcttgataattgctctttccttaatag----------------------ctctgatcttggtgacattatcttgcttctttcaggcacacttaactctcataatgatgcaaataattataatactcagcacaggactatcatgagaaataaatgagatggtatgcagagaacataatactatgatttctccatgatgaacgtttggttcattttagcttccaatattTATAGTAACACTAACAGCAGAGGAGATCATAGCAATAGTACTAATACT
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4508025 375 + 123392446 CCACTTTCGTTTGAGCCTTTTCAGCATCATTTTCTGTGGGCTCATGCAATAGCTAAGTCACCCACTTCTCATACA-CCTTATTATATTTCTACCCAtggaaagcct------------------ggtctctgtagtcagaaagctctgaatcttgataatcactctgtccttagtag----------------------ctgtgatcttggtgaagttactttgcttctttcaggcacactcaattctcatggtgaggcacacaattacgatactcagcatagggctatggtgaaaaatgaaggagacagtgtgtagagaattgaatactatgtcttgtc---------tacttggttaatttaagcttccaatagttatggtaacactaataccagcagtaatagtagcaatagtACCAATACT
i micMur3.chr6             C 0 I 89
s proCoq1.NW_012150019v1      173252 376 +   1371726 CCACTTTCATTTGAGCCTCTTCAGTATCATTTTCTGTGGGCTCATGCAACAGCTGAGTCACCCACTTCTCATACACCCTTATTATATTTCTACCTgtggaaagcct------------------ggtctcggtagtccgaaagatctgaatcttgataatcactctgtccttagtag----------------------ctgtgatcttggcgaagttactttgcttctttcaggcacactgagttctcatggtgatgtacatagttatgatacttagcacagggctattgtgaaaaatgaaggagacagcgtgtagagaattgaatactatgttttgtc---------cacTTGGTTAATTTTAGCTTCCAATAGTTATAGGAACACTAATATCAGCAGTAATAGTAGCAATAGTACCAATACT
i proCoq1.NW_012150019v1   I 113 I 107
s otoGar3.GL873550          15366037 411 -  18854210 CTACTGTGATTTGAGCCTCTTGGGTATTAATTTCTGTGGGCTTCTGGAATACCTAAGTCATCTATTTCTCATACACCCTTG--GTGTTTCAAACCATTGAAAATCCTGTAGTCCTGGATTATTGGGTAACTGTAGTCAGAAAGATATAAATCTTGATAATCACTCTGTCTTTAGTAGTGATAATCACTCTGTCCTTCATCTGTGAT-TTGGTGAAGTTCCTTTGATTCTTTTAGGCACACTTAATTCTCATGATGATGTACGTAATTATGATACTCAGCTTAGGGATATTGTGGAAAATGAATGAGACAATTTGT--AGAATTTAAGATTATGTCTTGTC---------CACTTGGTAAATGTCAGCTTCAaatagtaatagtaacactagttccagtagtaatcatagcaatagtactaaggat
i otoGar3.GL873550         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e canFam3.chr12             70415852  24 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=247620.000000
s hg38.chr6_KI270758v1_alt     67710 78 +     76752 GGTAGTAACTAAT-CTTCTTTTCAAACCAAACATCCTCAGTAATTAAAATTTTTCTCATAAGAATTTGTATTTGTAAAT
s panTro5.chr6             142765270 78 - 175400573 ggtagtaACTAAT-CTTCTTTTCAAACCAAACATCCTCAGTAATTAAAATTTTTCTTATAAGAATTTGTATTTGTAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140912927 78 - 173848474 ggtagtaACTAAT-CTTCTTTTCAAACCAAACATCCTCAGTAATTAAAATTTTTCTTATAAGAATTTGTATTTGTAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437145 78 +   2807050 GGCAGTAACTAAT-CTTCTTTTCAAACCAAACATCCTCAGTAATTAAAATTTTTCTCATAAGAATTTGTATTTGTAAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751118 78 - 122973662 GGTAGTAATTAAT-CTTCTTTTCAAACCAAACATCCTCAGTAATTAAAATTTTTCTCATCAgaatttgtatttgtaaat
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138691345 75 - 171630274 GGTAGTAATAAA----TCTTCTCAAACCAAACATCCTCAGTAATTAAAATTTTTCTCCTAAGAATTTGTGTTTGTAAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246498 75 +   1154217 GGTAGTAATAAA----TCTTTTCAAACCAAACATCCTCAGTAATTAAAATTTTTCTCATCAGAATTTGTATTTGTAAAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063651 75 +  15232693 GGTAGTAATAAA----TCTTTTCAAACCAAACATCCTCAGTAATTAAAATTTTTCTCATAAgaatttgtatttgtaaat
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      313358 75 +    446445 GGTCGTAATAAA----TCTTTTCAAATCAAACATCCTCGGTAATTAAAATTTTTCTCATAAGAATTTGTGTTTGTAAAT
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15366448 79 -  18854210 agtaataatTTTTGCTTACTGTCAAACCAAACATCCTCAATGATTAAAGTTTTTCTCATTAGAACTTATACATAGGAAT
i otoGar3.GL873550         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508400 89 + 123392446 I
e proCoq1.NW_012150019v1      173628 107 +   1371726 I
e canFam3.chr12             70415852 24 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=0.000000
s hg38.chr6_KI270758v1_alt     67788 1646 +     76752 TAGAGctctccctctccctctccctctccctctccctctccctctccctctccgtctccgtctcccctttccacggtctccctctggactgtgctgctgccatctcggctaactgcaacctccctgcctgattctcctgcctcagcctgccgagtgcctgcgattgcaggcgcgcgccgccacgcctgacgggttttcgtatttttttggtggagacggggtttcgctgtgttggccgggctgttctccagctcctaaccgcgagtgatccgccagcctcggcctcccgaggtaccgggattgcagacggagtctcgttaactcagtgctcaatggtgcccaggctggagtgcagtggcgtgatctcggctggctacaacctccacctcccagccgcctgccttggcctcccaaagtgccgagattgcagcctctgcccggccgctaccccgtctgggaagtgaggggcgtctctgcctggccgcccatcatctgggatgtgaggagcccctctgcctggctgcccagtctggaaagtgaggagcgcctcttcccggccaccatcccatctaggaagcgaggagcgtctctgcccggccgcccatcgtctgagatgtggggagcgcctctgccccgccgccccgtctgggaggcgaggagcgtctctgcccggccaccccgtctgagaagtgaggagaccctccgcccggctgccaccccgtctaggaagtgaggagcgtctccgcccggcagccaccccatccggaagggaggtgggggggtcagccccctcccggccagccaccccgtccgggaggtgaggtgcgcctctgcccggccgcccctactgggaagtgaggagcccctctgcccagccagccgccccgtccgggagggaggtgggggggtcagccccccacccggccagccgccccgtccgggagggaggtgggggtcagccccccgcccggccagccgccccgtctgggagggaggtgggggagtcagccccccgcccggccagccgcgccgtccgggaggtgaggggcgcctctgcccggtcgcccctactgggaagtgaggagcccctctccccggccaccaccccgtctgggaggtgtacccaacagctcattgagaacgggccatgatgacaatggcggttttgtggaatagaaaagggggaaaggtggggaaaagattgagagatcggatggttgctgtgtctgtgtagaaagaagcagacatgggagacttttcattttgttctgtactaagaaaaattcttctgccttgggatcctgttgatctatgaccttacccccaaccctgtgatctctgaaacatgtgctgtgtccactcagggttaaatggattaagggcggtgcaagatgtgctttgttaaacagatgcttgaaggcagcatgctcgttaagagtcatcaccaatccctaatctcaagtaatcagggacacaaacactgcggaaggccgcagggtcctctgcctaggaaaaccagagacctttgttcacttgtttatctgctgaccttccctccactattgtcctatgaccctgccaaatccccctctgcgagaaacacccaagaatgatcaataaaaaaaaataaaaaataaaAAAAAAAA
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508400   89 + 123392446 I
e cebCap1.NW_016107339v1    14063726    0 +  15232693 C
e proCoq1.NW_012150019v1      173628  107 +   1371726 I
e aotNan1.NW_018508875v1      313433    0 +    446445 C
e calJac3.chr4             138691420    0 - 171630274 C
e canFam3.chr12             70415852   24 -  72498081 I
e saiBol1.JH378315            246573    0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15366527    0 -  18854210 C
e panPan2.chr6             140913005    0 - 173848474 C
e nomLeu3.chr1a             45751196    0 - 122973662 C
e gorGor5.CYUI01000036v1     2437223    0 +   2807050 C
e panTro5.chr6             142765348    0 - 175400573 C

a score=10764.000000
s hg38.chr6_KI270758v1_alt     69434 3 +     76752 TAG
s panTro5.chr6             142765348 3 - 175400573 TAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913005 3 - 173848474 TAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437223 3 +   2807050 TAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751196 3 - 122973662 tag
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138691420 3 - 171630274 TAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246573 3 +   1154217 TAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063726 3 +  15232693 tag
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      313433 3 +    446445 TAG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15366527 3 -  18854210 TAT
i otoGar3.GL873550         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508400 89 + 123392446 I
e proCoq1.NW_012150019v1      173628 107 +   1371726 I
e canFam3.chr12             70415852 24 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=68449.000000
s hg38.chr6_KI270758v1_alt     69437 17 +     76752 AATATGTTTGAATTTGA
s panTro5.chr6             142765351 17 - 175400573 AATATGTTTGAATTTGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913008 17 - 173848474 AATATGTTTGAATTTGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437226 17 +   2807050 AATATGTTTGAATTTGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751199 17 - 122973662 aatatgtttgaatttgG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138691423 17 - 171630274 AATATGTTTGAATTTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246576 17 +   1154217 AATATGTTTGAATTTGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063729 17 +  15232693 aatatgtttgaatttgG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      313436 17 +    446445 AATATGTTTGAATTTGG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4508489 17 + 123392446 AATATATTTAAATTTTT
i micMur3.chr6             I 89 C 0
s otoGar3.GL873550          15366530 17 -  18854210 AATATATTCAATTTTTT
i otoGar3.GL873550         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      173628 107 +   1371726 I
e canFam3.chr12             70415852 24 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=244946.000000
s hg38.chr6_KI270758v1_alt     69454 54 +     76752 GGAGGATTAAATTAATTAGGAAATGTTTGTAGGTGCAGGGCTATTTAGAGTTAA
s panTro5.chr6             142765368 54 - 175400573 GGAGGATTAAATTAATTAGGAAATGTTTGTAGGTGCAGGGCTATTTAGAGTAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913025 54 - 173848474 GGAGGATTAAATTAATTAGGAAATGTTTGTAGGTGCAGGGCTATTTAGAGTAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437243 54 +   2807050 GGAGGATTAAATTAATTAGGAAATGTTTGTAGGTGCAGGGCTATTTAGAGTAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751216 54 - 122973662 GGAGGATTAAATTAATTAGGAAATGTTTGTAGGTGCAGGGCTATTTGGAGTAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138691440 49 - 171630274 GGAGGATTAAATTAATTAGGAAATGTTTGTAGGTGTGGGGCTATT-----TAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246593 54 +   1154217 GGAGGATTAAATTAATTAGGAAATGTTTGTAGGTGTGGGGCTATTTAGAGTAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063746 54 +  15232693 GAAGGATTAAATTAATTAGGAAATGTTTGTAGGTGTGGGGCTATTTAGAGTAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      313453 54 +    446445 GGAGGATTAAATTAATTAGGAAATGTTTGTAGGTGTGGGGCTATTTAGAGTAAA
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4508506 54 + 123392446 GGAGGATTCAATTAATAAGGAAATGTTAGTAGGTGCAGGGATATTCAGAGTAAA
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      173735 54 +   1371726 GGAGGATTCAATTAATGAGGAAATGTTTGTAGGAGCAGGGACATTCAGAGTAAA
i proCoq1.NW_012150019v1   I 107 C 0
s otoGar3.GL873550          15366547 34 -  18854210 TGAGG-----ATTAACTAGAAAATATTT---------------TTCAGCATAAA
i otoGar3.GL873550         C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e canFam3.chr12             70415852 24 -  72498081 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=376324.000000
s hg38.chr6_KI270758v1_alt     69508 80 +     76752 GCGACATGCATTGGAAACTGATAGCCCAC--------AATTCT-------AGAAAGACTCTAAGATGGTCAGGGGCCATTTTCCACTT-CACTGAG
s panTro5.chr6             142765422 79 - 175400573 GCGACATGCATTGGAAATTGATAGCCCAC--------AATTCT-------AGAAAGACTCTAAGATGGTCAGGGGCCATTTTCCACTT-CA-TGAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913079 79 - 173848474 GCGACATGCATTGGAAATTGATAGCCCAC--------AATTCT-------AGAAAGACTCTAAGATGGTCAGGGGCCATTTTCCACTT-CA-CGAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437297 80 +   2807050 GCGACATGCATTGGAAATTGATAGCCCAC--------AATTCT-------AGAAAGACTCTAAGATGGTCAGGGGCCATTTTCCACTT-CACTGAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751270 80 - 122973662 GTGACATGCGTTAGAAATTGATAGCCCAC--------AATTCT-------AGAAAGACTCTAAGATGGTCAGGGGCCATTTTCCACTT-CACTGAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138691489 80 - 171630274 GTGACATGTATTAGAAATTGATAACCCAC--------AATTCT-------AGGAAGACTCTAAGATGGTCATGGACCATTTTTCACTT-CActgaa
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246647 58 +   1154217 GTGACATGTATTAGAAATTGATAACCCAC--------AATTCT-------AGAAAGG----------------------TTTTCACTT-CACTGAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063800 80 +  15232693 GTGACATGTATTAGAAATTGATAACCCAC--------AATTCT-------AGAAAGACTCTAAGACGGTCAGGGACCATTTTTCACTT-CACTGAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      313507 80 +    446445 GTGATATGTATTAGAAATTGATAACCCAT--------GATTCT-------AGAAAGACTCTAAGATGGTcagggaccatttttcactt-cactgaa
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4508560 79 + 123392446 GTAACAT-CACTAGAAATTGACAACCCAC--------AATTCT-------GGAAAGACTCTAAAATGGTCAGGAACTATTTTCTACTT-CAATGAG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      173789 76 +   1371726 GTAGCAT-CACTAGAAATTGACAACCCAC--------AATTCT----------AAGACTCTGAGATGGTCAGGGGCTATTTTCTACTT-CAATGAG
i proCoq1.NW_012150019v1   C 0 I 168
s otoGar3.GL873550          15366581 87 -  18854210 GAAATGTGCACTAGAAATTGATAACCCAC--------AATTCTTTAAAATGGCAAGACTTTACAATGGTCAGGGCCCGTTTTCCACTT-CGATGAG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70415876 77 -  72498081 GTAACATGCACTAGAAACTGATAATCAACTAATAATTAATTAT-------TGAAAGACTCTAAGAT------------TTTTCCACTTACActggg
i canFam3.chr12            I 24 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=152757.000000
s hg38.chr6_KI270758v1_alt     69588 30 +     76752 ATGCAACAAGATCTTCTCCATCTCAGGCTG
s panTro5.chr6             142765501 30 - 175400573 ATGCAACAAGCTTTTCTCCATCTCAGGCTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913158 30 - 173848474 ATGCAACAAGCTTTTCTCCATCTCAGGCTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437377 30 +   2807050 ATGCAACAAGCTCTTCTCCATCTCAGGCTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751350 30 - 122973662 ATGCAACAAGCTCTTCTCCATCTCAGGCTG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138691569 30 - 171630274 atgcaacaagctcttctccatctcaggcta
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246705 30 +   1154217 ATGCAAcaagctcttctccatctcaggctg
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063880 30 +  15232693 ATGCAAcaagctcttctccatctcaggctg
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      313587 30 +    446445 atgcaacaagctcttctccatctcaggctg
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4508639 30 + 123392446 CTACACGAAGCTCTTCTCCGTCTCAGGCTG
i micMur3.chr6             C 0 I 149
s otoGar3.GL873550          15366668 30 -  18854210 AAACAAAAAGCTCTTCTCTGTCCTGGGCTG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70415953 30 -  72498081 atacatcaagctcttctttgtctcaggttg
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=5500.000000
s hg38.chr6_KI270758v1_alt     69618 1 +     76752 G
s panTro5.chr6             142765531 1 - 175400573 G
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913188 1 - 173848474 G
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437407 1 +   2807050 G
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751380 1 - 122973662 G
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138691599 1 - 171630274 g
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246735 1 +   1154217 g
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063910 1 +  15232693 g
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      313617 1 +    446445 g
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15366698 1 -  18854210 G
i otoGar3.GL873550         C 0 I 8
s canFam3.chr12             70415983 1 -  72498081 g
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=1139917.000000
s hg38.chr6_KI270758v1_alt     69619 344 +     76752 TTAAACAATAGACTTCCTTCTGAACAAATTATCTTT--------CAACGCAATTCACATGAAAACATCCAC-CAGGTTGCtcaagtctcagcttaaatatcacctcactggaggaattccttgaATGCATTATTTTGTCTCTTGGAAATCTCTTATTCCTTCATAACATTCATCACAATTTGTTTGTGTACTTTCTCATAAAACCAGAAATCTGATCTGCTTTACTTATTTGACATTGAATAAATGGTTGTATATATTTATGC----TGAATGAATGAATGGTCTCAGAACA-T-AAAAAATCTGCTAACATTCCAGAATGAAATATAGAC--AGAG-TG--AAAACCATG-GAATGAATAACCA
s panTro5.chr6             142765532 344 - 175400573 TTAAACAATAGACTTCCTTCTGAGCAAATTATCTTT--------CAATGCAATTCACATGAAAACATCCAC-CAGGTTGCtcaagtctcagcttaaatatcacctcactggaggaattccttgaacgcactatttTGTCTCTTGGAAATCTCTTATTCCTTCATAACATTCATCACAATTTGTTTGTGTACTTTCTCATAAAACCAGAAATCTGATCTGCTTTACTTATTTGACATTGAATAAATGGTTGTATATATTTATGC----TGAATGAATGAATGGTCTCAGAACA-T-AAAAAATCTGCTAACATTCCAGAATGAAATATAGAC--AGAG-TG--AAAACCATG-GAATGAATAACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913189 344 - 173848474 TTAAACAATAGACTTCCTTCTGAGCAAATTATCTTT--------CAATGCAATTCACATGAAAACATCCAC-CAGGTTGCtcaagtctcagcttaaatatcacctcactggaggaattccttgaacgcactatttTGTCTCTTGGAAATCTCTTATTCCTTCATAACATTCATCACAATTTGTTTGTGTACTTTCTCATAAAACCAGAAATCTGATCTGCTTTACTTATTTGACATTGAATAAATGGTTGTATATATTTATGC----TGAATGAATGAATGGTCTCAGAACA-T-AAAAAATCTGCTAACATTCCAGAATGAAATATAGAC--AGAG-TG--AAAACCATG-GAATGAATAACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437408 345 +   2807050 TTAAACAATAGACTTCCTTCTGAGCAAATAATCTTT--------CAACGCAATTCACATGAAAACATCCAC-CAGGTTGCtcaagtctcagcttaaatatcacctcactggaggaattccttgaATGCATTATTTTGTCTCTTGGAAATCTCTTATTCCTTCATAACATTCATCACAATTTGTTTGTGTACTTTCTCATAAAACCAGAAATCTGATCTGCTTTACTTATTTGACATTGAATAAATGGTTGTATATATTTATGC----TGAATGAATGAATGGTCTCAGAACA-TAAAAAAATCTGCTAACATTCCAGAATGAAATATAGAC--AGAG-TG--AAAACCATG-GAATGAATAACCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751381 346 - 122973662 TTAAACAATAGACTAACTTCTGAGCAAATTATCTTT--------CAACGCTATTCACATGAATACATCCAC-CAGGTTGCtcaagtctcagcttaaatatcacctcactggaggaaCTATTT----GCACTATTTTGTCTCTTGGAAATCTCTTATTCCTTCATAACATTCATCACAATTTATTTGTGTACTTTCTCATAAAGCCAGAAATCTGATCTGCTTTACTTATTTGACATtgaataaatggttgtatatatttatgctaaatgaatgaatgaatgGTCTCAGAACA-T-AAAAAATCTGCTAACATTCCAGCATGAAATATAGACAGAGAG-TG--AAAACCACG-GAATGAATAACCA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138691600 344 - 171630274 ttaaacaatagacctccttctgaccaaattatcttt--------cagcgttattcaaatgaatacatccgc-catgttgctcaagtctcagcttaaatatcacctcattgggggaattctttgaATGCACTATTTTGTCTCTTGGTGATCTCTTATTCCTTCACAACATTCATCACAATTCGTATGTGCGCTTTCCCATAAAGCCAGAGGTCTGATCTGCTTTACTTATTTGACATTGAATAAATGCTTGTATATATTTATGC----TGAATGAATGAATGGTCTCAGAACA-T-TAAAAATATGCTAACGTTCCAGCATGGAATAGACAG--AGAG-TG--AAAACCATG-GAATGAATAACCA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            246736 344 +   1154217 ttaaacaatagacttccttctgaccaaattatctta--------caacgttattcacatgaatacatccac-catgttgctcaagtctcagcttaagtatcacctctttgggggaattctttgaatacactattttgtctcgtggcgatctcttattccttcataacatttatcataatttgtatGTGCACTTTCCCATAAAGCCAGAAGTCTGATCTGCTTTACTTATTTGACATTGAATAAATGCTTGCACATATTTTTGC----TGAATGAATGAATGCTCTCAGAACA-T-AAAAAATGTGCTAACATTCCAACGTGAAATAGACAG--AGAA-TG--AAAACCATG-GAATGAATAACCA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14063911 340 +  15232693 ttaaacaatagacctccttctgaccaaattatcttt--------caatgttattcacatgaatacatccgc-catgttgctcaagtctcagcttaaatatcacctcattgggggaattctttgaatgcactattttgtctcgtggagatctcttattccttcataacatttatcacaatttgtatGTGCACTTTCCCATAAGGCCAGAAGTCTGATCTACTTTATTTATTTGACATTGAATAAATGCTTGTATATATTTATGC----TGAATGAATGAATGGTCTCAGAACA-T-AAAAAATATGCTAACATTCTAATGTGAAAT----AG--AGAG-TG--AAAACCATG-AAATGAATAACCA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      313618 346 +    446445 ttaaacaatagacctccttctgaccaaattatcttt--------cagtgttattcacatgaatacatccgc-catgttgctcaagtctcagcttaaatatcacctcattgggggaattctttgaacgccctattttgtctcttggcgatctcttattccttcataacattcATCACAATTTGTATGTGCACTTTCCCATAAAGCCAGAAGTCTGATCTGCTTTACTTATTTGACATTGAATAAATGCTTGTATATGTTTATGC----TGAATGAATGAATGGTCTCAGAACA-T-AAAAAATATGCTAACATTCCAGCATGAAATAGACAG--AGGA-TGGAAAAACCATG-GAATGAATAATCA
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70415984 352 -  72498081 ---tgtaacagacttccttctgactgaactgcccttacagttcacaatgttattcacaggaataaatccatatatataacttaagtctcagattaaa-gtcagttcctcagggaaattccttcaatccaccaTTTTTTCTCATGGAAATCTCTTATTCCTTTATAACCTTCATCACAATTTGTACATGTACTTTCCCATGAAGTGAGAAATCAGATCTGCTTTATTTATTTGGCCTTAATTAAATAGTTCTATAGATTAATGC----TGAATGAATGAATGATACCAGAAAAGT-AAGAAATCTATTCAAATTTCAGCATGAGATTGAGAC--TGAACTG--AAAGCCATGAGAATGAATACCCA
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15366699   8 -  18854210 I

a score=355164.000000
s hg38.chr6_KI270758v1_alt     69963  91 +     76752 -------------------ATAAACAAATGCAAAAGTTTCCCATTTGTA------TGGAGGAGATTATGTGGGACAAAATAATAAAGTCACTCACCTGCTTCAAAC-----CTTTCTTCAG
s panTro5.chr6             142765876  88 - 175400573 -------------------ATAAACAAATGCAAAAGTTTCCCATTTGTA------TGGAGGAGATTATGTGGGACAAAATAAT---GTCACTCACCTGCTTCAAAC-----CTTTCTTCAG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913533  88 - 173848474 -------------------ATAAACAAATGCAAAAGTTTCCCATTTGTA------TGGAGGAGATTATGTGGGACAAAATAAT---GTCACTCACCTGCTTCAAAC-----CTTTCTTCAG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437753  89 +   2807050 -------------------ATAAACAAATGCAAAAGTTTCCCATTTGTA------TGGAGGAGATTATGTGGGACAAAATAAT--AGTCACTCACCTGCTTCAAAC-----CTTTCTTCAG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751727  88 - 122973662 -------------------ATAAACAAATGCAAAAGTTTCCCATTTGTA------TGGAGGAGATTATGTGGGGCAAAATAAT---GTCACTCACCTGCTTCAAAC-----CTTTCTTCAG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138691944  91 - 171630274 -------------------ATAAACAAACGCAAAAGTTTCCCATTTGTA------CGGAAGATATTACGTGGGATGAAGTAATAAGGTAACTCACCTGCTTCAAAC-----CTTTCTTCAG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            247080  91 +   1154217 -------------------ATAAACAAATGCAAAATTTTCCCATGTGTA------TGGAAGAGATTATGTGGGACGAAATAATAAGGTAACTCACCTGCTTCGAAC-----CTTTCTTCAG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14064251  91 +  15232693 -------------------ATAAACAAATGCAAAAGCTTCCCATTTGTA------TGGAAGAGATTATGTGGGATGAAATAATAAGGTAACTCACCTGCTTCAAAC-----CTTTCTTCAG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      313964  91 +    446445 -------------------ATAAACAAACGCAAAAGTTTCCCATTTGTA------TGGAAGAGATTATGTAGGATGAAATAATAAGGTAACTCCCCTGCTTCAAAC-----CTTTCTTCAG
i aotNan1.NW_018508875v1   C 0 C 0
s otoGar3.GL873550          15366707 102 -  18854210 -------------------ATAAACAAATGCAAGAATTTCTCATTTGTATATGAGTGGAAGAGATTATGTGGGGTAAAACAGTAAGGTTGCTCACTTGCTTTGAACTGTTTCTTTCTCCAG
i otoGar3.GL873550         I 8 C 0
s canFam3.chr12             70416336 115 -  72498081 ACCAGGTTTTATTGGGAGTTTATATAAATATAAGATTTTCTCATTTGTA------TAGAAGAGATTATGTGGGACAAAATAATAAGGTCACTCACCTACTTTGAATTGTCCTTTTCTCCAG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=19701.000000
s hg38.chr6_KI270758v1_alt     70054 5 +     76752 TCAAA
s panTro5.chr6             142765964 5 - 175400573 TCAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913621 5 - 173848474 TCAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437842 5 +   2807050 TCAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751815 5 - 122973662 TCAAA
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138692035 5 - 171630274 TCAAA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            247171 5 +   1154217 TCAAA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14064342 5 +  15232693 TCAAA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      314055 5 +    446445 Tcaaa
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70416451 5 -  72498081 TTAAA
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15366809 0 -  18854210 C

a score=163.000000
s hg38.chr6_KI270758v1_alt     70059  4 +     76752 A------ACA-
s panTro5.chr6             142765969  4 - 175400573 A------ACA-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913626  4 - 173848474 A------ACA-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437847  4 +   2807050 A------ACA-
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751820 10 - 122973662 AACAAAGACA-
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016107339v1    14064347  4 +  15232693 A------ACA-
i cebCap1.NW_016107339v1   C 0 I 8
s canFam3.chr12             70416456  4 -  72498081 -------AAAG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e aotNan1.NW_018508875v1      314060  0 +    446445 C
e calJac3.chr4             138692040  0 - 171630274 C
e saiBol1.JH378315            247176  0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15366809  0 -  18854210 C

a score=9864.000000
s hg38.chr6_KI270758v1_alt     70063 13 +     76752 ACAggctgggcac
s panTro5.chr6             142765973 13 - 175400573 ACAggctgggcgc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913630 13 - 173848474 ACAggctgggcgc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437851 13 +   2807050 ACAggctgggcac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751830 13 - 122973662 ACAGCctgggcgc
i nomLeu3.chr1a            C 0 C 0
s canFam3.chr12             70416460 13 -  72498081 AAAAGAAAAAAAC
i canFam3.chr12            C 0 I 219
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e cebCap1.NW_016107339v1    14064351  8 +  15232693 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e aotNan1.NW_018508875v1      314060  0 +    446445 C
e calJac3.chr4             138692040  0 - 171630274 C
e saiBol1.JH378315            247176  0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15366809  0 -  18854210 C

a score=233805.000000
s hg38.chr6_KI270758v1_alt     70076 255 +     76752 tgtggctcacgcctgtaatcccagcactttgggagaccaaggtgggcggatcacaaggtcaggagtttgcaaccagcttggccaacatggtgaaatctcatctctactaaaaatacgaagacattagccaggcatggtgacgggcgcctgtaatcccagctactcggaaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagccgagatcgcaccactgcactccagcccaggcaaca
s panTro5.chr6             142765986 255 - 175400573 tgtggctcacgcctgtaatcccagcactttgggagaccgaggtgggcggatcacaaggtcaggagtttgcaaccagcttggccaacatggtgaaatctcatctctactaaaaatacgaagacattagccaggcatggtgacgggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagccgagatcgcaccactgcactccagcccaggcaaca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913643 255 - 173848474 tgtggctcacgcctgtaatcccagcactttgggagaccgaggtgggcggatcacaaggtcaggagtttgcaaccagcttggccaacatggtgaaatctcatctctactaaaaatacgaagacattagccaggcatggtgacgggtgcctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtgagccgagatcgcaccactgcactccagcccaggcaaca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2437864 255 +   2807050 tgtggctcacgcctgtaatcccagcactttgggagaccaaggtgggcggatcacaaggtcaggagtttgcaaccagcttggccaacatggtgaaatctcatctctaccaaaaatacgaagacattagccaggcatggtgacgggcgcctgtaatcccagctactcggaaggctgaagcaggagaattgcttgaacccaggaggcagaggttgcagtgagccgagatcgcaccactgcactccagcccaggcaaca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45751843 254 - 122973662 tgtggctcacgcctgtaatcccagcactttgggagaccgaggcgggcagatcacaaggtcagaagtttgcaaccagcttgg-caatatggtgaaatctcatctctactaaaaatatgaagacattagccaggcatggtgacgggcacctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcggaggttgcagtgagccgagatcgcgccactgcactccagcccacgcaaca
i nomLeu3.chr1a            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e cebCap1.NW_016107339v1    14064351   8 +  15232693 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e aotNan1.NW_018508875v1      314060   0 +    446445 C
e calJac3.chr4             138692040   0 - 171630274 C
e canFam3.chr12             70416473 219 -  72498081 I
e saiBol1.JH378315            247176   0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15366809   0 -  18854210 C

a score=12110.000000
s hg38.chr6_KI270758v1_alt     70331 15 +     76752 gtgtgaga------------------------------ctccatc
s panTro5.chr6             142766241 15 - 175400573 gtgtgaga------------------------------ctccatc
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913898 15 - 173848474 gtgtgaga------------------------------ctccatc
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438119 15 +   2807050 gtgtgaga------------------------------ctccatc
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752097 15 - 122973662 gtgcgaga------------------------------ctccatc
i nomLeu3.chr1a            C 0 C 0
s canFam3.chr12             70416692 45 -  72498081 GTGTGAAATAAAAAAAANNNNNNNNNNATTGTTCCTTTCTCCAGT
i canFam3.chr12            I 219 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e cebCap1.NW_016107339v1    14064351  8 +  15232693 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e aotNan1.NW_018508875v1      314060  0 +    446445 C
e calJac3.chr4             138692040  0 - 171630274 C
e saiBol1.JH378315            247176  0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e otoGar3.GL873550          15366809  0 -  18854210 C

a score=11423.000000
s hg38.chr6_KI270758v1_alt     70346 10 +     76752 -tcaaaacaac
s panTro5.chr6             142766256 10 - 175400573 -tcaaaacaac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913913 10 - 173848474 -tcaaaacaac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438134 10 +   2807050 -tcaaaacaac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752112 10 - 122973662 -tcaaaacaac
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550          15366809 10 -  18854210 -TCTAAAAAAC
i otoGar3.GL873550         C 0 I 1
s canFam3.chr12             70416737 10 -  72498081 CTAAAAAGAA-
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e cebCap1.NW_016107339v1    14064351  8 +  15232693 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e aotNan1.NW_018508875v1      314060  0 +    446445 C
e calJac3.chr4             138692040  0 - 171630274 C
e saiBol1.JH378315            247176  0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=2836.000000
s hg38.chr6_KI270758v1_alt     70356 3 +     76752 aac
s panTro5.chr6             142766266 3 - 175400573 aac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913923 3 - 173848474 aac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438144 3 +   2807050 aac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752122 3 - 122973662 aac
i nomLeu3.chr1a            C 0 C 0
s saiBol1.JH378315            247176 3 +   1154217 AAC
i saiBol1.JH378315         C 0 C 0
s otoGar3.GL873550          15366820 2 -  18854210 AA-
i otoGar3.GL873550         I 1 C 0
s canFam3.chr12             70416747 3 -  72498081 AAG
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e cebCap1.NW_016107339v1    14064351 8 +  15232693 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e aotNan1.NW_018508875v1      314060 0 +    446445 C
e calJac3.chr4             138692040 0 - 171630274 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=4936.000000
s hg38.chr6_KI270758v1_alt     70359 3 +     76752 aac
s panTro5.chr6             142766269 3 - 175400573 aac
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913926 3 - 173848474 aac
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438147 3 +   2807050 aac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752125 3 - 122973662 aac
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138692040 3 - 171630274 AAC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            247179 3 +   1154217 AGC
i saiBol1.JH378315         C 0 C 0
s otoGar3.GL873550          15366822 3 -  18854210 AAC
i otoGar3.GL873550         C 0 I 3
s canFam3.chr12             70416750 2 -  72498081 AA-
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e cebCap1.NW_016107339v1    14064351 8 +  15232693 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e aotNan1.NW_018508875v1      314060 0 +    446445 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=3121.000000
s hg38.chr6_KI270758v1_alt     70362 12 +     76752 aacaacaaca--ac
s panTro5.chr6             142766272 12 - 175400573 aacaacaaca--aa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913929 12 - 173848474 aacaacaaca--ac
i panPan2.chr6             C 0 I 3
s gorGor5.CYUI01000036v1     2438150 12 +   2807050 aacaacaaca--ac
i gorGor5.CYUI01000036v1   C 0 I 3
s nomLeu3.chr1a             45752128 10 - 122973662 aacaaaaaaa----
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138692043 10 - 171630274 AACAACAACA----
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            247182 10 +   1154217 AACAACCACA----
i saiBol1.JH378315         C 0 C 0
s aotNan1.NW_018508875v1      314060 12 +    446445 aacaacaacaac--
i aotNan1.NW_018508875v1   C 0 I 1
s otoGar3.GL873550          15366828  8 -  18854210 GACAAAAA------
i otoGar3.GL873550         I 3 C 0
s canFam3.chr12             70416752  3 -  72498081 ---AAA--------
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e cebCap1.NW_016107339v1    14064351  8 +  15232693 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=75218.000000
s hg38.chr6_KI270758v1_alt     70374 19 +     76752 aaATCACACGGGAAATAAC
s panTro5.chr6             142766284 19 - 175400573 aaaTCACACGGGAAATAAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913944 19 - 173848474 AAATCACACGGGAAATAAC
i panPan2.chr6             I 3 C 0
s gorGor5.CYUI01000036v1     2438165 19 +   2807050 aaATCACATGGGAAATAAT
i gorGor5.CYUI01000036v1   I 3 C 0
s nomLeu3.chr1a             45752138 19 - 122973662 aaaTCACACGGGAAATAAC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138692053 19 - 171630274 AAATCACATGGGAAATAAT
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            247192 19 +   1154217 AAATCACATGGGAAATAAT
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14064359 19 +  15232693 AAATCACATGGGAAATAAT
i cebCap1.NW_016107339v1   I 8 C 0
s aotNan1.NW_018508875v1      314073 19 +    446445 aaaccacaTGGGAAATAAT
i aotNan1.NW_018508875v1   I 1 C 0
s otoGar3.GL873550          15366836 18 -  18854210 -AATTACGTGGAAAAATAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70416755 19 -  72498081 AAACCATATGGGAAACTAT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e micMur3.chr6               4508669 149 + 123392446 I
e proCoq1.NW_012150019v1      173865 168 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=188737.000000
s hg38.chr6_KI270758v1_alt     70393 40 +     76752 GCCAAGAACATGTCTTATGTACTACTGAGATACTCCCCTC
s panTro5.chr6             142766303 40 - 175400573 GCCAAGAACATGTCTTATGTACTACTGAGATACTCCCCTC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140913963 40 - 173848474 GCCAAGAACATGTCTTATGTACTACTGAGATACTCCCCTC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438184 40 +   2807050 GCCAAGAACATGTCTTACGTACTACTGAGATACTCCCCTC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752157 40 - 122973662 GCCAAGAACGTGTCTTATGTACTACTGAGATACTCTTCTC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138692072 37 - 171630274 GC---GAACGCATCTTATGTACTACTGGGATACTCTCCTC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            247211 40 +   1154217 GCGAAGAACACATCTTATGTACTACAGGAATACTCTCCTC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14064378 40 +  15232693 GCAAAGAACACATCTTATGTACTACAGGGATACTCTCCTC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      314092 40 +    446445 GCGAAGAACACGTCTGATGTACTACTGGGATACTCTCCTC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4508818 40 + 123392446 GCCAAGAACATGTCTCACGAACTAGTGAAATACTCCCCTC
i micMur3.chr6             I 149 I 2
s proCoq1.NW_012150019v1      174033 40 +   1371726 GCCAAGAACATGTCTCATGAACTAGTGAAATACTCCCCTC
i proCoq1.NW_012150019v1   I 168 I 7
s otoGar3.GL873550          15366854 40 -  18854210 GCCAAGAACATGTTTCATTAATTAGTGAAACATTCCCCCT
i otoGar3.GL873550         C 0 I 5
s canFam3.chr12             70416774 39 -  72498081 ATCAAAAACATGTCTTCTCAACTAGTTGGATGCTTTACT-
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=58391.000000
s hg38.chr6_KI270758v1_alt     70433 15 +     76752 CCTCCTCCCTGTATC
s panTro5.chr6             142766343 15 - 175400573 CCTCCTCCCTGTATC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140914003 15 - 173848474 CCTCCTCCCTGTATC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438224 15 +   2807050 CCTCCTCCCTGTATC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752197 15 - 122973662 CCTCCCCCCTGTATC
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138692109 13 - 171630274 CCTCCTCCCCG--TC
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            247251 15 +   1154217 CTTCCTCCCTGTATC
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14064418 15 +  15232693 CCTCCTGCCTGTATC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      314132 15 +    446445 CCCACTCCCTGTACC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4508860 15 + 123392446 CCTGCTCCCTGTATC
i micMur3.chr6             I 2 C 0
s otoGar3.GL873550          15366899 15 -  18854210 ACTGTTCCCTGTATC
i otoGar3.GL873550         I 5 C 0
s canFam3.chr12             70416813 14 -  72498081 -CTTATTCCCTTATT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e proCoq1.NW_012150019v1      174073  7 +   1371726 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=497203.000000
s hg38.chr6_KI270758v1_alt     70448 86 +     76752 TTTCTGGACTCCTA----GCTTCAAA-----ATAAAATTTCCAGAAGATGGCATGTCTCTGGAAAATGCCCAGGAAATGCCTCATTAAATCCTGG
s panTro5.chr6             142766358 86 - 175400573 TTTCTGGACTCCTA----GCTTCAAA-----ATAAAATTTCCAGAAGACGGCATGTCTCTGGAAAATGCCCAGGAAATGCCTCATTAAACCCTGG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140914018 86 - 173848474 TTTCTGGGCTCCTA----GCTTCAAA-----ATAAAATTTCCAGAAGACGGCATGTCTCTGGAAAATGCCCAGGAAATGCCTCATTAAACCCTGG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438239 86 +   2807050 TTTCTGGACTCCTA----GCTTCAAA-----ATAAAATTTCCAGAAGATGGCATGTTTCTGGAAAATGCCCAGGAAATGCCTCATTAAATCCTGG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752212 86 - 122973662 TTTCTGGACTCCTA----GCTTCAAA-----ATAAAATTTCCAGAAGATGGCACGTCTCTGGAAAATGCCTAGGAAATGCCTCATTAAATCCTGG
i nomLeu3.chr1a            C 0 C 0
s calJac3.chr4             138692122 86 - 171630274 TTTCTGGACTCCTA----GCTTCAAA-----ATAAAATTTCCAGGAGATGACACAACTCTGGAAAATACCCAGGAAATGCCTCATTAAATCCTGG
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            247266 86 +   1154217 TTTCTGGTCTCCTA----GCTTCAAA-----ATAAAATTTCCAGAAGATGACACATCTCTGGAAAATGCCCAGGAAATGCCTCATTAAATCCTGG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14064433 86 +  15232693 TTTCTGGTCTCCTA----GCTTCAAA-----CTAAAATTTCCAGAAGATGACACATCTCTGGAAAATGCCCAGGAAATGCCTCATTAAATCCTGG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      314147 85 +    446445 TTTCTGGACTCCTA----GCTTCAAA-----AT-AAATTTCCAGAAGATGACACATCTCTGGAAAATACCCAGGAAATGCCTCATTAAATCCTGG
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4508875 91 + 123392446 TTTCTGGGCTCCCA----GATTCAAAATATTATAAAACCTCCAGAAAATGGCACCTCTCTGGAAAATGCCCCGATAATGCCTCATGAAGTCCTGG
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      174080 91 +   1371726 TTTCTGGACTCCCA----GCTTCGAAATATTATAAAATCTCCGGAAGATGACACCTCTCTGGAAAATGCCCAGATAATGCCTCATGAAATCCTGG
i proCoq1.NW_012150019v1   I 7 C 0
s otoGar3.GL873550          15366914 85 -  18854210 TTTCTGGACTTCTA----CCTTCAA------ATAAAATCTCCAGAAGATGGCACCTCTCCAGAAAATGCCCTGGAAATGCCTCATGAAATTCTGG
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70416827 90 -  72498081 TTTTTGGACTCCTACCTGCCTTCAAA-----ATAAAATTTCCAGAATATAGCACATCTCTGAAAATTGCCCTGGATATGCCTCATGAAATTCTGA
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=13880.000000
s hg38.chr6_KI270758v1_alt     70534 3 +     76752 GGC
s panTro5.chr6             142766444 3 - 175400573 GGC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140914104 3 - 173848474 GGC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438325 3 +   2807050 GGC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752298 3 - 122973662 GGC
i nomLeu3.chr1a            C 0 C 0
s cebCap1.NW_016107339v1    14064519 3 +  15232693 GGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      314232 3 +    446445 GGC
i aotNan1.NW_018508875v1   C 0 C 0
s micMur3.chr6               4508966 3 + 123392446 GGC
i micMur3.chr6             C 0 C 0
s proCoq1.NW_012150019v1      174171 3 +   1371726 GGC
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15366999 3 -  18854210 AGC
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70416917 3 -  72498081 GGT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e calJac3.chr4             138692208 0 - 171630274 C
e saiBol1.JH378315            247352 0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=313671.000000
s hg38.chr6_KI270758v1_alt     70537 125 +     76752 AGTCGAAGCCACATGACAACATTAGAGTTACTCACTAGCATATAGCTTTGCTTTTCTCCAGTCTAAAATAAAAC--AAATGAATTACATTCTCTCATTCACAAAACTTTCACTTCAGAGTATGAAAT
s panTro5.chr6             142766447 125 - 175400573 AGTCGAAGCCACAAGACAACATTAGAGTTACTCACTAGCATATAGCTTTGCTTTTCTCCAGTCTAAAATAAAAC--AAATGAATTACATTCTCTCATTCACGAAACTTTCACTTCAGAGTATGAAAT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140914107 125 - 173848474 AGTCGAAGCCACAAGACAACATTAGAGTTACTCACTAGCATATAGCTTTGCTTTTCTCCAGTCTAAAATAAAAC--AAATGAATTACATTCTCTCATTCACGAAACTTTCACTTCAGAGTATGAAAT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438328 125 +   2807050 AGTGGAAGCCACATGACAACATTAGAGTTACTCACTAGCATATAGCTTTGCTTTTCTCCAGTCTAAAATAAAAC--AAATGAATTACATTCTCTCATTCACAAAACTTTCACTTCAGAGTATGAAAT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752301 125 - 122973662 AGTCGAAGCCACAAGACAACATTAGAGTTACTCACTAGCATATAGCTTTGCTTTTCTCCAGTCTAAAATAAAAC--AAATGAATTACATTCTCTCATTCACAAAACTTTCACTTCAGAGTATGAAAT
i nomLeu3.chr1a            C 0 C 0
s micMur3.chr6               4508969 124 + 123392446 AACTGAAGCCGTAAGACAA-ATTGGAGTTACTCATCAGCATATAACTTTGCATTTCTCCGGTCTGAAATAAAAC--AAAGGAATTAGATTCTCTCAGTAATAAGATCTTCACTTCAGAATATAAAAT
i micMur3.chr6             C 0 N 0
s proCoq1.NW_012150019v1      174174 124 +   1371726 AACTGAAGACATAAGACAA-ATTAGAGTTACTCACCAGCATATAACTTTGCATTTCTCCAGTCTGAAATAAAAC--AAAGGAGTTAGATTTTCTCATTCATAAGATCTTCACTTCAGAATATAAAAT
i proCoq1.NW_012150019v1   C 0 C 0
s otoGar3.GL873550          15367002 127 -  18854210 AACTGAAGCCATAAGATGACACTGGAGTTACTCACCAGCATGTAACTTTGCTTTTCTCTAGTCTGAAATAAAACAGAAAAAAATTAGATTCTCTCATTCATAAGACCTTCACTTCACAATATACAAT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70416920 124 -  72498081 GTCTGAAGTCCTAAGACAACATC--AATTACTCACCAGCATATAATTTTGCTTTTCTCCAGTCTGAAATAAAAAA-AAAGGAATTAGATTCTCCCATTAATAGTACCTTCACTCTAGGGTATTAAAC
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522   0 +  15232693 C
e aotNan1.NW_018508875v1      314235   0 +    446445 C
e calJac3.chr4             138692208   0 - 171630274 C
e saiBol1.JH378315            247352   0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=86485.000000
s hg38.chr6_KI270758v1_alt     70662 46 +     76752 TACTGAGACCAC----ATGAAACTTGAAGGTTTATGACAGTGCTATATTT
s panTro5.chr6             142766572 46 - 175400573 TACTGAGACCAC----ATGAAACTTGAAGGTTTATGACAGTGCTATATTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140914232 46 - 173848474 TACTGAGACCAC----ATGAAACTTGAAGGTTTATGACAGTGCTATATTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438453 46 +   2807050 TACTGAGACCAC----ATGAAACTTGAAGGTTTATGACAGTGCTATATTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752426 46 - 122973662 TACTGAGACCAC----ATGAAACTTGAAGGTTTATGACAGTGCTATATTT
i nomLeu3.chr1a            C 0 C 0
s proCoq1.NW_012150019v1      174298 46 +   1371726 TATTGTGACTTT----ATGAAGTCTGAAGGTTTATGATAGTGCTATATTT
i proCoq1.NW_012150019v1   C 0 N 0
s otoGar3.GL873550          15367129 50 -  18854210 GACTGTGACTTTTTAAATGTAATCTGCAGGTTTCTGATAGTGCTATATTT
i otoGar3.GL873550         C 0 C 0
s canFam3.chr12             70417044 46 -  72498081 TGCTGCAACCCT----CTAAAATATGAAGATGTATGATAGTGCTATATTT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522  0 +  15232693 C
e aotNan1.NW_018508875v1      314235  0 +    446445 C
e calJac3.chr4             138692208  0 - 171630274 C
e saiBol1.JH378315            247352  0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=73836.000000
s hg38.chr6_KI270758v1_alt     70708 59 +     76752 CTAGGTTTACCATTTCTTAAGAACAGTTCAAGG-TATTTGTCTT-TTTTACATCTCCTGTT
s panTro5.chr6             142766618 59 - 175400573 CTAGGTTTACCATTTCTTAAGAACAGTTCAGGG-TATTTGTCTT-TTTTACATCTCCTGTT
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140914278 59 - 173848474 CTAGGTTTACCATTTCTTAAGAACAGTTCAGGG-TATTTGTCTT-TTTTACATCTCCTGTT
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438499 59 +   2807050 CTGGGTTTACCATTTCTTAAGAACAGTTCAGGG-TATTTGTCTT-TTTTACATCTCCTGTT
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752472 59 - 122973662 CTAGGTTTATCATTTCTTAAGAACAGTTCAGGG-TATTTCTCTT-TTTTACATCTCCTGTT
i nomLeu3.chr1a            C 0 C 0
s otoGar3.GL873550          15367179 60 -  18854210 CTTTGGTGAATGTCTTTTAATGAAAGTTCTGGG-GCTCTGTCTTCTTTTACCTCTCCTATT
i otoGar3.GL873550         C 0 N 0
s canFam3.chr12             70417090 57 -  72498081 TTGTGTTCATCACCTC--AATGACAATTCTGGGATATTTGTCTT-CTTTA-ATCTCCTGTT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522  0 +  15232693 C
e aotNan1.NW_018508875v1      314235  0 +    446445 C
e calJac3.chr4             138692208  0 - 171630274 C
e saiBol1.JH378315            247352  0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=5075.000000
s hg38.chr6_KI270758v1_alt     70767 4 +     76752 ctac
s panTro5.chr6             142766677 4 - 175400573 CTAC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140914337 4 - 173848474 CTAC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2438558 4 +   2807050 ctac
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45752531 4 - 122973662 CTAC
i nomLeu3.chr1a            C 0 I 3219
s canFam3.chr12             70417147 4 -  72498081 CTAT
i canFam3.chr12            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522 0 +  15232693 C
e aotNan1.NW_018508875v1      314235 0 +    446445 C
e calJac3.chr4             138692208 0 - 171630274 C
e saiBol1.JH378315            247352 0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=910.000000
s hg38.chr6_KI270758v1_alt     70771 1 +     76752 t
s panTro5.chr6             142766681 1 - 175400573 T
i panTro5.chr6             C 0 I 3217
s panPan2.chr6             140914341 1 - 173848474 T
i panPan2.chr6             C 0 I 3227
s gorGor5.CYUI01000036v1     2438562 1 +   2807050 t
i gorGor5.CYUI01000036v1   C 0 C 0
s canFam3.chr12             70417151 1 -  72498081 T
i canFam3.chr12            C 0 I 34134
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522 0 +  15232693 C
e aotNan1.NW_018508875v1      314235 0 +    446445 C
e calJac3.chr4             138692208 0 - 171630274 C
e saiBol1.JH378315            247352 0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e nomLeu3.chr1a             45752535 3219 - 122973662 I

a score=26281.000000
s hg38.chr6_KI270758v1_alt     70772 287 +     76752 gggttcaagcgattctcctccctcagcctccctagtagctgggattacaggcacccaccactgcacccagctaatttttttttttttttttttt--gtatttttagtagagacaaggtttcaccatgttggccaggctggtcttgaactcctgacttcaagagatccacccatctcagcctcccaaagtgctgggattacaggtatgagccaccacacccggtcTAttttatttttttagagacagcgtcttgctctgttgcccaggctggaatgcagttgcccaatca
s gorGor5.CYUI01000036v1     2438563 289 +   2807050 gggttcaagcgattctcctccctcagcctccctagtagctgggattacaggcacccaccactgcacccagctaattttttttttttttttttttttgtatttttagtagagacgaggtttcaccatgttggccaggctggtcttgaactcctgacttcaagagatccacccatctcagcctcccaaactgctgggattacaggtatgagccaccacacccggtcTAttttatttttttagagacagcgtcttgctctgttgcccaggctggaatgcaattgcccagtca
i gorGor5.CYUI01000036v1   C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522   0 +  15232693 C
e aotNan1.NW_018508875v1      314235   0 +    446445 C
e calJac3.chr4             138692208   0 - 171630274 C
e canFam3.chr12             70417152 34134 -  72498081 I
e saiBol1.JH378315            247352   0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I
e panPan2.chr6             140914342 3227 - 173848474 I
e nomLeu3.chr1a             45752535 3219 - 122973662 I
e panTro5.chr6             142766682 3217 - 175400573 I

a score=660951.000000
s hg38.chr6_KI270758v1_alt     71059 608 +     76752 tGAATGCCTGTTCTACAGTAAGTCTAAGGAGAAAATCGCAGCCTGCCCCCAGCTCTCTACAGTTACTTTGAAAGTGGAAGTAATAAAAATCACCCCAGGAGACTTTGGACTGGACTGAGCTGCAGAATGATAGGAATTCTAATGTGTGCTTTTGT------GGACAATATTCAGTGTAACTCCCTTCTCTCACTTGCAAAGGGCTGAAACCACATTATTCAGGGAGCAGGAATCATCTTCCTGTATGATATCCAGGTCTGTGGATCATCCCATTGTTCAACTCACAAAGTTAACTGATTTA-AAAATAAAACCAAAAGAAGCACACTTCT--CGACCACACCATATTCACCAGTGGAGAGCATGTGCAGAGCTGTGCAGGG-GAAATCACAGCTCAGAAATGCAGGGCTCTGTGCTTCAAGAACCTTAGGGCT-----------------------TCAAGAGTAGAATAGAAATTATAATACAGTTGTACAGCGCCAGA-ATAAAATGTGCTCAAAAGGAATTGTCTCTTGACATTTCACATTCTTCCCAAGTTTAAGTCTTGTTTCTTCATGTCACA-AAGGTTCACAGGTAATCAGAGACACAATTAGCAGTTACATAAATATTAGTATT-GAGCCACTGA
s panTro5.chr6             142769899 606 - 175400573 TGAATGCCTGTTCTACAGTAAGTCTAAGGAGAAAATCGCAGCCTGCCCCCAGCTCTCTACAGTTACTTTGAAAGTGGAAGTAATAAAAATCACCCCAGGAGACTTTGGACTGGACTGAGCTACAGAATGATAGGAATTCTAATGTGTGCTTTTGT------GGACAATACTCAGTGTAACTCCCTTCTCTCACTTGCAAAGGGCTGAAACCACATTATTCAGGGAGCAGGAATCATCTTCCTGTATGATATCCAGGTCTGTGGATCATCCCATTGTTCAACTCACAAAGTTAACTGATTTA-AAAATAAAACCAAAAGAAGCACACTTCT--CGACCACACCATATTCACCAGTGGAGAGCATGTGCAGAGCTGTGCAGGG-GAAATCACAGCTCAGAAATGCAGGGCTCTGTGCTTCAAGAACCTTAGGGCT-----------------------TCAATAGTAGAATAGAAATTATAATACAGTTGTACAGTGCCAGA-ATAAAATGTGCTCAACAGGAATTGTCTTTC--TGTTTCACATTCTTCCCAAGTTTAAGTCTTGTTTCTTCATGTCACA-AAGGTTCACAGGTAATCAGAGACACAATTAGCAGTTACATAAATATTAGTATT-GAGCCACTGA
i panTro5.chr6             I 3217 C 0
s panPan2.chr6             140917569 606 - 173848474 TGAATGCCTGTTCTACAGTAAGTCTAAGGAGAAAATCGCAGCCTGCCCCCAGCTCTCTACAGTTACTTTGAAAGTGGAAGTAATAAAAATCACCCCAGGAGACTTTGGACTGGACTGAGCTACAGAATGATAGGAATTCTAATGTGTGCTTTTGT------GGACAATACTCAGTGTAACTCCCTTCTCTCACTTGCAAAGGGCTGAAACCCCATTATTCAGGGAGCAGGGATCATCTTCCTGTATGATATCCAGGTCTGTGGATCATCCCATTGTTCAACTCACAAAGTTAACTGATTTA-AAAATAAAACCAAAAGAAGCACACTTCT--CGACCACACCATATTCACCAGTGGAGAGCATGTGCAGAGCTGTGCAGGG-GAAATCACAGCTCAGAAATGCAGGGCTCTGTGCTTCAAGAACCTTAGGGCT-----------------------TCAATAGTAGAATAGAAATTATAATACAGTTGTACAGTGCCAGA-ATAAAATGTGCTCAAAAGGAATTGTCTTTC--TGTTTCACATTCTTCCCAAGTTTAAGTCTTGTTTCTTCATGTCACA-AAGGTTCACAGGTAATCAGAGACACAATTAGCAATTACATAAATATTAGTATT-GAGCCACTGA
i panPan2.chr6             I 3227 C 0
s gorGor5.CYUI01000036v1     2438852 608 +   2807050 tgAATGCCTGTTCTACAGTAAGTCTAAGGAGAAAATCACAGCCTGCCCCCAGCTCTCTACAGTTACTTTGAAAGTGGAAGTAATAAAAATCACCCCAGGAGACTTTGGACTGGACTGAGCTGCAGAATGATAGGAATTCTAATGTGTGCTTTTGT------GGACAATATTCAGTGTAACTCCCTTCTCTCACTTGCAAAGGGCTGAAACCACATTATTCAGGGAGCAGGAATCATCTTCCTGTATGATATCCAGGTCTGTGGATCATCCCATTGTTCAACTCACAAAGTTAACTGATTTA-AAAATAAAACCAAAAGAAGCACACTTCT--CGACCACACCATATTCACCAGTGGAGAGCATGTGCAAAGCTGTGCAGGG-GAAATCACAGCTCAGAAATGCAGGGCTCTGTGCTTCAAGAACCTTAGGGCT-----------------------TCAATAGTAGAATAGAAATTATAATACAGTTGTACAGTGCCAGA-ATAAAATGTGCTCAAAAGGAATTGTCTTTTGACATTTCACATTCTTCCCAAGTTTAAGTCTTGTTTCTTCATGTCACA-AAGGTTCACAGGTAATCAGAGACACAATTAGCAGTTACATAAATATTAGTATT-GAGCCACTGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45755754 595 - 122973662 TGAATGCCTGTTCTAGAGCAAATCTAAGGAGAAAATCGCAGCCTGCCCCCAGCTCTCTACAGCTACTTTGAAAGTGGAAGTAATAAAAATCACCCCAGGAGACTTTGGACGGGACTGAGCTACAGAATGATAGGAATTCTAATGTGAGC------------------TACTCAGTGTAGCTCCCTTCTCTCATTTGCAAAGGACTGAAACCACATTATTCAGGGAGTAGGAATCATCTTCCTGTATGATATCCAGGTCTGTGGATCATCTCAATATTCAACTCACAAAGTTAACTGATTTA-AAAATAAAACCAAAAGAAGCACACTTCT-CCGACCACATCATGTTCACCGATGGAGGACATGTGCAGAGCTGTGCAGGG-GAAATCACAGCTCAGAAATGCAGGGCTCTGTGCTTCAAGAACCTTAGGGCT-----------------------TCAATAGTAGAATAGAAATCATAACACAGTTGTACAGTGCCAGA-ATAAAATGTGCTCAAAAGGAATTGTCTTTC--TGTTTCACATTCTTCCCAAGTTTAAGTCTTGTTTCTTCATGTCACA-AAGGTTTACAGATAATCAGAGACACAATTAGCAATTGCATAAATATTAGTATT-GAGCCACTAA
i nomLeu3.chr1a            I 3219 C 0
s canFam3.chr12              2064102 615 +  72498081 TGAATGCCTCTCCTAGAATGGATCCAGTGAAAAAGTCACAACCTGTCTGCAGTTCT-TGCAGCTACTTTGAAAGTGGAGGTAAGAAAGGTCATCCTAGGGGACTTTGGACTGG-TGGGGCTATAGAACAATA-----------GTGTGCCTTGGTTAAAAAAAAAAAAGCTCAGTGTAGCTTCCTCCTCCTACCTGCAAAGGGCTGAAATCACATTATTCAGGAAGAGAGAATCCTCTTCCTGTGTGATATTCAAGGATGTTGGTCATCCCAATGTTGAACTCACAAAGTTAACCGATTGAGGGAACAAGAGTAAGAGATATAGGCTTCTTCCTACCATACCCTAACTGGCACTG------------AAAGCTGTGCAGGGAAAAATAAGAGTTGGAAAATAAAGGACTTTGTGCTCTGTAAAGCTTAGGGCTGTATTTCCAAATCTTTAGGGCTCCCCAAAGTAAAATGGGAATAATAACACGGTTATATGATCTTAGACATAGAATGTGCTCAAAAGGCATT-TCTTAC--TACTTCA-ATTCTTTCCACATCCAAGTCATGTTTTTTCATGTCACACAAGGCTTACAGATAATTAAGGACACAAATAGCTGTTGCATAGATATTAGTATGAAAGCCACTAA
i canFam3.chr12            n 34134 I 499
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522   0 +  15232693 C
e aotNan1.NW_018508875v1      314235   0 +    446445 C
e calJac3.chr4             138692208   0 - 171630274 C
e saiBol1.JH378315            247352   0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=152805.000000
s hg38.chr6_KI270758v1_alt     71667 132 +     76752 GAATTTGGCCAAAGGGAAACC-AAAGTCCTAAATAAATATTCTCTAGATCCAGGGAGGTACATTCCACCTGTTAAGAA-TCAGATTTATTTGGATATAATTTGCATAAAATGAAATGCATTATT-TGAAATGTAC
s panTro5.chr6             142770505 132 - 175400573 GAATTTGGCCAAAGGGAAACC-AAAGTCCTAAATAAATATTCTCTAGATCCAGGGAGGTACATTCCACCTGTTAAGAA-TAAGAtttatttggatataatttgcataaaatgaaatgcattatt-tgaaatgtac
i panTro5.chr6             C 0 I 3537
s panPan2.chr6             140918175 133 - 173848474 GAATTTGGCCAAAGGGAAACC-AAAGTCCTAAATAAATATTCTCTAGATCCAGGGAGGTACATTCCACCTGTTAAGAATTCAGAtttatttggatataatttgcataaaatgaaatgcattatt-tgaaatgtac
i panPan2.chr6             C 0 I 3471
s gorGor5.CYUI01000036v1     2439460 132 +   2807050 GAATTTGACCAAAGGGAAACC-AAAGTCCTAAATAAATATTCTCTAGATCCAGGGAGGTACATTCCACCTGTTAAGAA-TCAGATTTATTTGGATATAATTTGCATAAAATGAAATGCATTATT-TGAAATGTAC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45756349 134 - 122973662 TAGTTTGGCCAAAGGGAAACCTAGAGTTCTAAATAAATATTCTCTAGACCCAGGGAGGTACATTCCACCTGTTAAGAATTCAGAtttatttggatataatttgcataaaatgaaatgcattatt-tgaaatgtac
i nomLeu3.chr1a            C 0 I 3175
s canFam3.chr12              2065216 133 +  72498081 CAATCTGGCCAAAGGAATACC-AAGATCTTAAATAAATATTCTCTAGAAACAGTGAGGTACATCTGACCttttagaaa-tcaaatttatggagatataatttgcatacagtggaatgcatggttatgaaatgtac
i canFam3.chr12            I 499 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522   0 +  15232693 C
e aotNan1.NW_018508875v1      314235   0 +    446445 C
e calJac3.chr4             138692208   0 - 171630274 C
e saiBol1.JH378315            247352   0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=4095.000000
s hg38.chr6_KI270758v1_alt     71799 3 +     76752 att
s panTro5.chr6             142774174 3 - 175400573 att
i panTro5.chr6             I 3537 C 0
s panPan2.chr6             140921779 3 - 173848474 att
i panPan2.chr6             I 3471 C 0
s gorGor5.CYUI01000036v1     2439592 3 +   2807050 att
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45759658 3 - 122973662 att
i nomLeu3.chr1a            I 3175 C 0
s canFam3.chr12              2065349 3 +  72498081 att
i canFam3.chr12            C 0 n 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522 0 +  15232693 C
e aotNan1.NW_018508875v1      314235 0 +    446445 C
e calJac3.chr4             138692208 0 - 171630274 C
e saiBol1.JH378315            247352 0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=849428.000000
s hg38.chr6_KI270758v1_alt     71802 1036 +     76752 cagactatcaccaaagagtctaactgcatcaggaatgcataaaataaa-tgcactgctgagagaaaatggtgccaacttgtaggaagtgaatttaaggatttggtggctgatccagcaaaaagttatgacaatgaggtgacagtagcccacatggctttattttggcaaaactttgacaagtttgcacatgtaggaagtttctcatagcatgaaactgtccaggggctacagagacaccatctggaaggagaaga---catgaaaattcaggggcagagggggagatgaaaggaagctcacatgtgtaggtgatatcactcaa-agcacaatggggaggttctgacttagagcactc--aaggaaagcagtggcttgggtttttgtttggttggttggttttgtttttgtcctagagtttatcttatcctggctagcacatgtcaggtacagcttcaaggggtatgcaaagcaggcaaactttaaatggctaaaattctgttcatttgggttatgtttaaaacaattcgatgtgtaacatttttagttccacactggtaggcttttaaactaaaagtcttagtctgctgtagaaaaataaacagcctaagggccaatatataagacccatttttggctcatttgtataacacaactttggaaataaggactgtctataagaataaagacaaaatgaaccacagatcattgtaccttagttgaaaaaattgtttcctacagggatatgaatctacaactctgaaaggatgatacatgtatactggaattaaacaattaagtaaatggatggtgagggtaggagtgatagagaagcaagagacagataagggaggctatagataagcaaagagaaaagctagaatgacccatgtgttaccagactggatttggaaacagtatgaactcatattgaccttatggttacataaata----tttatagatatgtacatattcatcggttattatatagagatatatatatctatatatacagatatattatagagatatatatatctatata
s panTro5.chr6             142774177 1011 - 175400573 cagactatcaccaaagagtctaactgcatcaggaatgcataaaataaa-tgcactgctgagagaaaatggtgccaacttgtaggaagtgaatttaaggatttggtggctgatccagcaaaaagttatgacaatgaggtgacagtagcccacatggctttattttggcaaaactttgacaagtttgcacatgtaggaagtctctcatagcatgaaactgtccaggggctacagagacaccatctggaaggagaagaagacatgagaattcaggggcagagggggagatgaaaggaagctcacatgtataggtgatatcactcaatagcacaatggggaggttctgacttacagcactc--aaggaaagcagtggcttgggcttttgtttgtttgtttggttttgtttttgtcctagagtttatcttatcctggctagcacatgtcaggtacagcttcaaggggtatgcaaagcaggcaaactttaaatggctaaaattctgttcatttgggttatgtttaaaacaattcgatgtgtaacatttttagttccacactggtaggcttttaaactaaaagtctcagtctgctgtagaaaagtaaacagcctaagggccaatatataagacccatttttggctcatttgtacaacacaactttggaaataaggactgtctataagaataaagacaaaatgaaccacagatcattgtaccttagttgaaaaaattgtttcctacagggatatgaatctacaactctgaaaggatgatacatgtatactggaattaaacaattaagtaaatggatggtgatggtgggagtgatagagaagcaagagacagataagggaggctatagataagcaaagagaaaagctagaatgacccatgtgttaccagactggatttggaaacagtatgaactcatattgaccttatggttacataaataaatatttatagatatgtacatattcatcggttattatatagagatatatatat---------------------------------atctatata
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140921782 1002 - 173848474 cagactatcaccaaagagtctaactgcatcaggaatgcataaaataaa-tgcactgctgagagaaaattgtgccaacttgtaggaagtgaatttaaggatttggtggctgatccagcaaaaagttatgacaatgaggtgacagtagcccacatggctttattttggcaaaactttgacaagtttgcacatgtaggaagtctctcatagcatgaaactgtccaggggctacagagacaccatctggaaggagaagaagacatgagaattcaggggcagagggggagatgaaaggaagctcacatgtataggtgatatcactcaatagcacaatggggaggttctgacttagatcactc--aaggaaagcagtggcttgggtttttgtttgtttggttggttttgtttttgtcctagagtttatcttatcctggctagcacatgtcaggtacagcttcaaggggtatgcaaagcaggcaaactttaaatggctaaaattctgttcatttgggtta-gtttaaaacaattcgatgtgtaacatttttagttccacactggtaggcttttaaactaaaagtctcagtttgctgtagaaaaataaacagcctaagggccaatatataagacccatttttggctcatttgtataacacaactttggaaataaggactgtctataagaataaagacaaaatgaaccacagatcattgtaccttagttgaaaagattgtttcctacagggatatgaatctacaactctgaaaggatgatacatgtatactggaattaaacaattaagtaaatggatggtgatggtgggagtgatagagaagaaagagacagacaagggaggctatagataagcaaagagaaaagctagaatgacccatgtgttaccagactggatttggaaacagtatgaactcatattgaccttatggttacataaataaatatttatagatatgtacatattcatcggttattatatag--------atat---------------------------------atctatata
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2439595 1002 +   2807050 cagactatcatcaaagagtctaactgcatcaggaatgcataaaataaa-tgcactgctgagagaaaatggtgccaacttgtaggaagcgaatttaaggatttggtggctgatccagcaaaaagttatgacaatgaggtgacagtagcccacatggctttattttggcaaaactttgacaagtttgcacatgtaggaagtctctcatagcatgaaactgtccagaggctacagagacaccatctggaaggagaaga---catgagaattcaggggcagagggggagatgaaaggaagctcacatgtataggtgatatcactcaatagcacaatggggaggttccgacttagagcactc--aaggaaagcagtggcttgggtttttgtttgtttggttggttttgtttttgtcctagagtttatcttatcctggctagcacatgtcaggtacagcttcaaggggtatgcaaagcaggcaaactttaaatggctaaaattctgttcatttgggttatgtttaaaacaattcgatgtgtaacatttttagttccacactggtaggcttttaaactaaaagtcttagtctgctctagaaaaataaacagcctaagggccaatatataagacccatttttggctcatttgtataacacaactttggaaataaggactgtctataagaataaagacaaaatgaaccacagatcattgtaccttagttgaaaaaattgtttcctacagggatatgaatctacaactctgaaaggatgatacatgtatactggaattaaacaattaagtaaatggatggtgatggtgggagtgatagagaagcaagagacagataagggaggctatagataagcaaagagaaaagctagaatgacccatgtgttaccagactggatttggaaacagtatgaactcatattgaccttatggttacataaata----tttatagatatgtacatattcatcggttattatatagagatat--atat---------------------------------atctatata
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45759661  952 - 122973662 cagactatcaccaaagaatctaactgcatcaggaatgcattaaagaaacttcactgaagggagaaaatggtggtaacttgtaggaagcgaatttaaggatgtggtggctgatccagcaaaaactcatgacaatgaggtgacagtagcccacacggctttattttggcaaaactttgacaagtttgcatgtgtgggaagtctctcatagcatg-aacagtccaggggctacagagacaccatctggaaggggaagaagacatgagaattcaggggcagagggggagatgaaagggagcccacatgtataggtgatatcactcaatagcacaatggggaggttctgacctagagcactttgaaggacagcagtgacttgggtttttgtttgc----tttgttttgtttttgtcctagagtttatcttatcctggctagcacatgtcaggtacagcttcaaggggtatgcaaagcaggcaaactttaaattgctaaaattctgtccatttgggttatatttaaaacaattcgatgtgtaacatttttagttccacactggtaggcttttaaactcaaagtcttagtctgctgtggaaaaataaacagcctaagggccaatatataagacccatttttggctcatttgtataacacaactttggaaataaggactgtctataagaataaagacaaaatgaaccacagatcattgtatcttagttgaaaaaattgtttcctacagggatatgaatctacaactctgaaaggatgatacatgtatactggaattaaacaattaagtaaatggatggtgatggtgggagtgatagacaagtaagacacagataagggaggctatagataaggaaagagaaaagctagaatgacccatgtgttaccagactggatttggaaacagtatgaactcatattgagcttatggttacagaaataa------------------------------------------------atat------------------------------------------
i nomLeu3.chr1a            C 0 C 0
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522    0 +  15232693 C
e aotNan1.NW_018508875v1      314235    0 +    446445 C
e calJac3.chr4             138692208    0 - 171630274 C
e canFam3.chr12              2065352    0 +  72498081 I
e saiBol1.JH378315            247352    0 +   1154217 C
e macFas5.chr4             138503236 2555 + 170955103 I
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=7133.000000
s hg38.chr6_KI270758v1_alt     72838 20 +     76752 tacaga-----tatatagatataaa
s panTro5.chr6             142775188 20 - 175400573 tacaga-----tatatagatataaa
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140922784 20 - 173848474 tacaga-----tatatagatataaa
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2440597 25 +   2807050 tacagatatattatatagatataaa
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45760613  1 - 122973662 -----------t-------------
i nomLeu3.chr1a            C 0 C 0
s macFas5.chr4             138505791 20 + 170955103 tatggt-----tacataaataaata
i macFas5.chr4             I 2555 I 2
e manLeu1.NW_012101600v1       83397 2673 -    115496 I
e cebCap1.NW_016107339v1    14064522  0 +  15232693 C
e aotNan1.NW_018508875v1      314235  0 +    446445 C
e calJac3.chr4             138692208  0 - 171630274 C
e canFam3.chr12              2065352  0 +  72498081 I
e saiBol1.JH378315            247352  0 +   1154217 C
e rheMac8.chr4             139336005 2540 - 172585720 I
e macNem1.NW_012013344v1      210050 2557 +    407600 I
e chlSab2.chr17             39660138 3009 +  71996105 I
e cerAty1.NW_012003702v1       82004 2552 +    463628 I

a score=447154.000000
s hg38.chr6_KI270758v1_alt     72858 122 +     76752 tatagatatgtatatattcatcggttagtatacacacatacatttatttccttgctctgccagccaagagtgcctggagcaaatgacatcccagtagcaactcactcacacacccagaccta
s panTro5.chr6             142775208 122 - 175400573 tatagatatgtatatattcatcggttagtatacacacatacatttatttccttgctctgccagccaagagtgcctggagcgaatgacatcccagtagcaactcactcacacacccagaccta
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140922804 122 - 173848474 tatagatatgtatatattcattggttagtatacacacatacatttatttccttgctctgccagccaagagtgcctggagcaaatgacatcccagtagcaactcattcacacacccagaccta
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2440622 122 +   2807050 tatagatatgtatatattcatcggttagtatacacacatacatttatttccttgctctgccagccaagagtgcctggagcaaatgacatcccagtagcaactcactcacacacccagaccta
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45760614 118 - 122973662 tatagatatgtatatattcatcggttagtatacacacatacatttatttccttgctctgccagccaagagtgcctgcagcaaatgacatcccagtagcaac----tcacactcctagagcta
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139338545 118 - 172585720 tatggatatgtatatattcatcagttaacatacacacatacatttatttccttgctctaccagccaaaagcgcctggagcaaatgacatcccagtagcaac----tcacacacctagagctg
i rheMac8.chr4             I 2540 C 0
s macFas5.chr4             138505813 118 + 170955103 tatggatatgtatatattcatcagttaatatacacacatacatttatttccttgctctgccagccaaaagctcctggagcaaatgacatcccagtagcaac----tcacacacctagagccg
i macFas5.chr4             I 2 C 0
s macNem1.NW_012013344v1      212607 118 +    407600 tatggatatgtatatattcatcagttaatatacacacatacatttatttccttgctctgccagccaaaagctcctggagcaaatgacatcccagtagcaac----tcacacacctagagccg
i macNem1.NW_012013344v1   I 2557 C 0
s cerAty1.NW_012003702v1       84556 118 +    463628 tatggatatgtatatattcatcagttaatatacacacatacatttatttccttgctctaccagccaaaagcgcctggagcaaatgacatcccagtagcaac----tcacacacctagagctg
i cerAty1.NW_012003702v1   I 2552 C 0
s manLeu1.NW_012101600v1       86070 118 -    115496 tatggatatgtatatattcatcagttaatatacacacatacatttatttccttgctctgccagtcaaaagctcctggagcaaatgacatcccagtagcaac----tcacacacctagagccg
i manLeu1.NW_012101600v1   I 2673 C 0
e cebCap1.NW_016107339v1    14064522   0 +  15232693 C
e aotNan1.NW_018508875v1      314235   0 +    446445 C
e calJac3.chr4             138692208   0 - 171630274 C
e canFam3.chr12              2065352   0 +  72498081 I
e saiBol1.JH378315            247352   0 +   1154217 C
e chlSab2.chr17             39660138 3009 +  71996105 I

a score=2517084.000000
s hg38.chr6_KI270758v1_alt     72980 535 +     76752 agattttggtttttaacaccattctccaataaaaggaaccagggctccttggagaaatggctgattctaggccagagcgtgtaataccagaaagtaagaaaatgctcaaaacaaccacaacaacaagaacgaaaacaacaagaataacaaaagtaaacacaatgataggaatatgtcaaagaggcacaggggtcaactgaaagacctcccaatggaccacactggaaaattttaagcaaaaacaaaagagaagttattattgaattatagcccaagtataaaataaatatccatgatatttacactgaaataaaaatgattacataatttaataaattgagagatattagacacatct---gtgt-ggaagaattccagataatttatgtagaaactgtcctccc-aaaaggtggaacgtaactttccacttcttaagtgtggattgcacatagtgattttcttccaaaaagtacagtatgaaaaggggtaggggaagaggtaattttatagtgaagaaacctgacaaacattacctcag
s panTro5.chr6             142775330 538 - 175400573 agattttggtttttaacaccattctccaataaaaggaaccagggctccttggagaaatggctgattctaggccacagcgtgtaataccagaaagtaagaaaatgctcaaaacaaccgcaacaacaagaacgaaaacaacaagaataacaaaagtaaacacaatgataggaatatgtcaaagaggcacaggggtcaactgaaagacctcccaatggaccacactggaaaattttaagcaaaaacaaaagagaagttattattgaattatagcccaagtataaaataaatatccatgatatttacactgaaataaaaatgattacataatttaataaattgagagctattagacacatcttctgtgt-ggaagaattccagataatttatgtagaaactgtcctccc-aaaaggtggaacgtaactttccacttcttaagtgtggattgcacatagtgattttcttccaaaaagtacagtatgaaaaggggtaggggaagaagtaattttatagtgaagaaacctgacaaacattacctcag
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140922926 538 - 173848474 agattttggtttttaacaccattctccaataaaaggaaccagggctccttggagaaatggctgattctaggccagagcgtgtaataccagaaagtaagaaaatgctcaaaacaaccgcaacaacaagaacgaaaacaacaagaataacaaaagtaaacacaatgataggaatatgtcaaagaggcacaggggtcaactgaaagacctcccaatggaccacactggaaaattttaagcaaaaacaaaagagaagttattattgaattatagcccaagtataaaataaatatccatgatatttacactgaaataaaaatgattacataatttaataaattgagagctattagacacatcttctgtgt-ggaagaattccagataatttatgtagaaactgccctccc-aaaaggtggaacgtaactttccacttcttaagtgtggattgcacatagtgattttcttccaaaaagtacagtatgaaaaggggtaggggaagaagtaattttatagtgaagaaacctgacaaacattacctcag
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2440744 534 +   2807050 agattttggtttttaacaccattctccaataaaaggaaccagggctccttggagaaatggctgattctaggccagagcgtgtaataccagaaagtaagaaaatgctcaaaacaaccgcaacaacaagaacgaa---aacaagaataacaaaagtaaacacaatgataggaatatgtcaaagaggcacaggggtcaactgaaagacctcccaatggaccacactggaaaatttaaagcaaaaacaaaagagaagttattattgaattatagcccaagtataaaataaatatccatgatatttacactgaaataaaaatgattacataatttaataaattgagagctattagacacatcttctgtgt-ggaagaattccagataatttatgtagaaactgtcct-cc-aaaaggtggaatgtaactttccacttcttaagtgtggattgcacatagtgattttcttccaaaaagtacagtatgaaaaggggtaggggaagaagtaattttatagtgaagaaacctgacaaacattacctcag
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45760732 537 - 122973662 agattttggtttttaacaccattctccaataaaaggaaccagggctccctggagaaatggctgattctaggccagagcgtgtaataccagaaagtgagaaactgctcaaaacaaccacaacaagaagaacgaaaaca--aagaataacaaaagtaaacacaatgataggaatatgtcaaagaggcacaggggtcaactgaaagacctcccaatggaccacactggaaaattttaagcaaaaacaaaagagaagttattattgaattatagcccaagtataaaataaatatcaatgatatttacactgaaataaaaatgattatataatttaataaattgagagatattagacacatcttctgtgt-ggaagaattccaaataatttatgtagaaactgtcctcccaaaaaggtggaacgtaactttccacttcttaagtgtggattgtacatcgtgattttcttccaaaaagtacagtatgaaaaggggtaggggaagaagtaatttgatagtgaagaaatctgacaaacattacctcag
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139338663 537 - 172585720 agattttggtttttaacaccattctccaataaaaggaaccagggctccttggagaaatggctggttctaggctgaagcgtgtaataccagaaagtaagaaaatgctcaaaacaaccacaacaacaagaacgga---tacaacaataataaaagtaaacacaatgataggaatatgtcacaaaagcacaggggtcagctgaaagacctcccaatggaccacactggaaaatttaaagtaaaaataaaagaaaagttattattgaattatagcccaagtataaaataaatatcaatgatatttacactgaaataaaaatgattacataatttaataaattgagagagattagacacatcttctgtgtaggaagaattccaaataatttatgtagaaaccgtcctctcaaaaaggtggaatgtaactttccacttcttaagtgtggaatgtacatagtgattttctaccaaaaagtacagtatgagaaggggtaggggaagaagtcattttacagtgaagaaatctgacaaacatttcctcag
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138505931 537 + 170955103 agattttggtttttaacaccattctccaaaaaaaggaaccagggctccttggagaaatggctggttccaggctgcagcgtgtaataccagaaagtaagaaaatgctcaaaacaaccacaacaacaagaatgaa---aacaacaataataaaagtaaacacaatgataggaatatgtcacaaaagcacaggggtcagctgaaagacctcccaatggaccacactggaaaatttaaagcaaaaataaaagaaaagttattatagaattatagcccaagtataaaataaatatcaatgatatttacactgaaataaaaatgattacataatttaataaattgagagagattagacacatcttctgtgtaggaagaattccaaataatttatgtagaaaccatcctctcaaaaaggtggaatgtaactttccacttcttaagtgtggattgtacatagtgattttctaccaaaaagtacagtatgagaaggggtaggggaagaagtcattttacagtgaagaaacctgacaaacatttcctcag
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      212725 537 +    407600 agattttggtttttaacaccattctccaaaaaaaggaaccagggctccttggagaaatggctggttccaggctgcagcgtgtaataccagaaagtaagaaaatgctcaaaacaaccacaacaacaagaatgaa---aacaacaataataaaagtaaacacaatgataggaatatgtcacaaaagcacaggggtcagctgaaagacctcccaatggaccacactggaaaatttaaagcaaaaataaaagaaaagttattatagaattatagcccaagtataaaataaatatcaatgatatttacactgaaataaaaatgattacataatttaataaattgagagagattagacacatcttctgtgtaggaagaattccaaataatttatgtagaaaccatcctctcaaaaaggtggaatgtaactttccacttcttaagtgtggattgtacatagtgattttctaccaaaaagtacagtatgagaaggggtaggggaagaagtcattttacagtgaagaaacctgacaaacatttcctcag
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       84674 537 +    463628 agattttggttttgaacaccattctccaataaaaggaaccagggctccttggagaaatggctggttctaggctgaagcgtgtaataccagaaagtaagaaaatgctcaaaacaaccacaacaacaagaacaga---tacaacaataataaaagtaaacacaatgataggaatatgtcacaaaagcacaggggtcagctgaaagacctcccaatggaccacactggaaaatttaaagcaaaaataaaagaaaagttattattgaattatagcccaagtataaaataaatatcaatgatatttacactgaaataaaaatgattacataatttaataaattgagagagattagacacatcttctgtgtgggaagaattccaaataatttatgtagaaaccgtcctctcaaaaaggtggaatgtaactttccacttcttaagtgtggattgtacatagtgattttctaccaaaaagtacagtatgagaaggagtagaggaagaagtcattttacagtgaagaaatctgacaaacatttcctcag
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39663147 537 +  71996105 agattttggtttttaacaccattctccaataaaaggaaccagggctccttggagaaatggctggttctaggctgcagcgtgtaataccagaaagtaagaaaatgctcaaaacaaccacaacaagaagaatgaa---aacaacaataataaaagtaaacacaatgataggaatatgtcacaaaagcacaggggtcagttgaaagacctcccaatggaccacactggaaaatttaaagcaaaaataaaagaaaagttattattgaattatagcccaagtataaaataaatatctgtgatatttacactgaaataaaaatgattacataatttaagaaattgagagagattagacacatcttctgtgtgggaagaattccaaataatttatgtagaaaccgtcctctcaaaaaggtggaatgtaactttccacttcttaagtgtggattgtacatagtgattttctaccaaaaagtacagtatgagaaggggtaggggaagaagtcattttacagtgaagaaacctgacaaacatttcctcag
i chlSab2.chr17            I 3009 C 0
s manLeu1.NW_012101600v1       86188 536 -    115496 agattttggtttttaacaccattctccaataaaaggaaccagggctccttggagaaatggctggttctaggctgccgcgtgtaataccagaaagtaagaaaatgctcaaaacaaccacaacaacaagaatgaa---aacaacaataataaaagtaaacacaatgataggaatatgtcacaaaagcacaggggtcagctgaaagacctcccaatggaccacactggaaaatttaaagtaaaaataaaagaaaagttattatagaattatagcccaagtataaaataaatatcaatgatatttacactgaaataaaaatgattacataatttaataaattgagagagattagacacatcttctgtgtgggaa-aattccaaataattaatgtagaaaccgtcctctcaaaaaggtggaatgtaactttccacttcttaagtgtggattgtatgtagtgattttctaccaaaaagtacagtatgagaaggggtaggggaagaagtcattttacagtgaagaaacctgacaaacatttcctcag
i manLeu1.NW_012101600v1   C 0 C 0
e cebCap1.NW_016107339v1    14064522   0 +  15232693 C
e aotNan1.NW_018508875v1      314235   0 +    446445 C
e calJac3.chr4             138692208   0 - 171630274 C
e canFam3.chr12              2065352   0 +  72498081 I
e saiBol1.JH378315            247352   0 +   1154217 C

a score=3961379.000000
s hg38.chr6_KI270758v1_alt     73515  849 +     76752 ctaggtgatcagggttaacatcatagtaa--gtcatgttgattataggtatccttgatattttctgatgagaactgtcctacacatcagt--------ggttttatcccccaaacaaattgctc----ctaaccgttta--aaaaatcaaca-aaacccaaaatg-agaacattctatagagtacctt--------cctcaaaactgtcaaggtcatcaaaaacaagaaaagcctgagaaactgtcacagcgaagagcagcctaggctgatatgacaactaaatataacgaggtattctggatgggatcctgaagtgaaaaaagaacattaggtaaaag-aaagaaaaattgaatagagtacgggcttcagttagtcacaatgcagcaggattagtccattagttgtgactattgaac-----------------catacaaatata------------------------aaatgttaacaat-------aggcaaaacagggagtggggtacatgggaactcctctaccatctttgcaacttttctataaatctaaaactattctaaaat-----------------aaaat----------------------ctgatttcaaaaTATATGTAAATAGA--CAT---------------------ACATGTAGTGCAGTCCACAATTCT--------------TAAAATCAACTAACATATTTATTTTGTTACATAT----TTATTTAAAAAATTAAGAATTCACTG------------AAAATGGGGA-------------------CAATAAAAAG-------AAAA-------atatatatctatatatatatatgaaga-----agtattcaaaaatcaatagaagagaatcttccagagataaggaaag------ttagacatctacagattgaaaagactcaT-----GAATGGT-------CAGAGTAATA----------GGGTCAGGGTAGAAATCCTCACTAAATTCATCTATATgaaaaagctgcctataaaagagcatgaatcaaactggcatcccatttcccatca
s panTro5.chr6             142775868  839 - 175400573 ccaggtgatcagggttaacatcatagtaa--gtcatgttgattataggtatcctcgatattttgtgatgagaactgtcctacacatcagt--------ggttttatcccccaaacaaattgctc----ctaaccgttta--aaaaatcaaca-aaacccaaaatg-agaacattctatagagtacctt--------cctcaaaactgtcaaggtcatcaaaaacaagaaaagcctgagaaactgtcacagagaagagcagcctaggctgacatgacaactaaatataacgaggtattctggatgggatcctgaagtgaaaaaagaacattaggtaaaag-aaagaaaaattgaatagagtacaggcttcagttagtcacaatgcagcaggattagttcattagttgtgactattgaac-----------------catacaaatata------------------------aaatgttaacaat-------aggcgaaacagggagtagggtacatgggaactcctccaccatctttgcaacttttctataaatctaaaactattctaaaat-----------------aaaat----------------------ctgatttcaaaaTATATGTAAATAGA--CAT---------------------ACATGTAGTGCAGTCCACAATTCT--------------TAAAATCAACTAACAtatttattttgttatatat----ttatttaAAAAATTAAGAATTGATTG------------AAAATGGGGA-------------------CAATAAAAAG-------AAAA-------ATATATAT----------ATATgaaga-----agtattcaaaaatcaatagaagagaatcttccagagataaggaaag------ttagacatctacagattgaaaagactcaT-----GAATGGT-------CAAAGTAATA----------GGGTCAGGGTAGAAATCCTCACTAAATTCATCTGTATgaaaaagctgcctataaaagagcatgaatcaaactggcatcccatttcccatca
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140923464  838 - 173848474 ccaggtgatcagggttaacatcatagtaa--gtcatgttgattataggtatcctcgatattttgtgatgagaactgtcctacacatcagt--------ggttttatcccccaaacaaattgctc----ctaaccgttta--aaaaatcaaca-aaacccaaaatg-agaacattctatagagtacctt--------cctcaaaactgtcaaggtcatcaaaaacaagaaaagcctgagaaactgtcacagagaagagcagcctaggctgacatgacaactaaatataatgaggtattctggatgggatcctgaagtgaaaaaagaacattaggtaaaag-aaagaaaaattgaatagagtacaggcttcagttagtcacaatgcagcaggattagttcattagttgtgacgattgaac-----------------catacaaatat-------------------------aaatgttaacaat-------aggcgaaacagggagtagggtacatgggaactcctccaccatctttgcaacttttctataaatctaaaactattctaaaat-----------------aaaat----------------------ctgatttcaaaaTATATGTAAATAGA--CAT---------------------ACATGTAGTGCAGTCCACAATTCT--------------TAAAATCAACTAACAtatttattttgttatatat----ttatttaAAAAATTAAGAATTGATTG------------AAAATGGGGA-------------------CAATAAAAAG-------AAAA-------ATATATAT----------ATATGAAGA-----AGTATTCAAAAATCAATAGAAGAGAATCTTCCAGAGATAAGGAAAG------TTAGACATCTACAGATTGAAAAGACTCAT-----GAATGGT-------CAAAGTAATA----------GGGTCAGGGTAGAAATCCTCACTAAATTCATCTGTATGaaaaagctgcctataaaagagcatgaatcaaactggcatcccatttcccatca
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2441278  841 +   2807050 ctaggtgatcagggttaacatcatagtaa--gtcatgttgattataggtatccttgatattttctgatgagaattgtcctacacatcagt--------ggttttatcccccaaacaaattgctc----ctaactgttta--aaaaatcaaca-aaacccaaaatg-agaacattctatagagtacctt--------cctcaaaactgtcaaggtcatcaaaaacaagaaaagcctgagaaactgtcacagagaagagcagcctaggctgatatgacaactaaatataacgaggtattctggatgggatcctgaagtgaaaaaagaacattaggtaaaag-aaagaaaaattgaatagagtacaggcttcagttagtcacaatgcagcaggattagtccattagttgtgactattgaac-----------------catacaaatata------------------------aaatgttaacaat-------aggcgaaacagggagtggggtacatgggaactcctctaccatctttgcaacttttctataaatctaaaactattctaaaat-----------------aaaat----------------------ctgatttcaaaaTATATGTAAATAGA--CAT---------------------ACATGTAGTGCAGTCCACAATTCT--------------TAAAATCAACTAACATATTTATTTTGTTACATAT----TTATTTAAAAAATTAAGAATTCACTG------------AAAATGGGGA-------------------CAATAAAAAG-------AAAA-------ATATATAT--------ATATATGAAGA-----AATATTCAAAAATCAATAGAAGAGAATCTTCCAGAGATAAGGAAAG------TTAGTCATCTACAGACTGAAAAGACTCAT-----GAATGGT-------CAGAGTAATA----------GGGTCAGGGTAGAAATCCTCACTAAATTCATCTGTATgaaaaagctgcctataaaagagcatgaatcaaactggcatcccatttcccatca
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45761269  843 - 122973662 ccaggtgatcaaggttaacatcatagtaa--gtcatgttgattataggtatccttgatattttgtgatgagagttgtcctacacattggt--------ggttttatcccccaaacaaattgctcctgtctaaccattta--aaaaatcaaca-aaacccaaaatg-agaacattctatagagtacctt--------cctcaaaactgtcaaggtcatcaaaaacaagaaaagcctgagaaactgtcacagacaagagttgcctaggttgacatgacaactaaatataacgaggtattctggatgggatcctgaaatgaaagaagaacattaggtaaaag-taagaaaaaccgaatagagtacaggcttcagttggtcacagtgcagcaggattagtccattagttgtgactactgaac-----------------catacaaatata------------------------aaatgttaacaat-------aggtgaaatagggagtgaggtacatgggacctcctctaccatctttgcaacttttctataaatct-aaactattctaaaat-----------------aaaaT----------------------CTGACTTCAAAATATATGTAAATAGA--CAT---------------------ACATGTACTGCAGTCCACAATTCT--------------TAAAATCAACTAACATATTTATTTTGTTACATAT----TTATTT-AAAAATTAAGAATTGATTG-----------AAAAATGGGGA-------------------CAATAAAAAG-------AAAAT------ATATATAT----------ATATAAAGA-----AGTATTCAAAAATCAATAGGAGAGAATCTTCCAGAGATAAGGAAAG------TTAGACATCTACAAATTGAAAAGACTCAT-----GAAAGGT-------CAGAGTAATA----------GGGTCAGGGTAGAAATCCTCACCAAATTCATCTGTATgaaaaagccgcctataaaagagcatgaatcaaactggcatcccatgtcccatca
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139339200  845 - 172585720 ccaggtgatcaaggttaacatcatcataa--gtcatgttgattataggtatccctgatattttgtgataagaattgtcctacgcatctgt--------ggttttatcccccaaacaaattgttcctgtctagccattta--aaaaatcaaca-aaacccaaaatg-agaacatgctataaagtacctt--------cctcaaaactgtcaaggtcatcaaaatcaaggaaagcctgagaaactgtcacagacgagaggagcctaggctgacatgacaactaaatataacgaggcattctagatgggatcccgaaatgaagaaagaacattaggtaaaag-taagaaaaattgagtagagtacaggctttagttagtcacaatgcagcagaattagtccattaattgtaactattgaac-----------------cacacaaatata------------------------aaatgttaacaat-------gggcaaaacagggcgt-gggtacatgggaactcctgtaccatctttgcaacttttctataaatctaaaactattctaaaat-----------------aaaaT----------------------CTGACTTCAAAATACATGTAAATAGA--CAT---------------------ACATGTAGTGCAGTCCTCAGTTCT--------------TAAAATCAACTAAC--ATTTA-TTTGTTACATAT----TTATTT-AAAAATTAAGAATTGATTG-----------AAAAATGGGGA-------------------CAATAAAAAG-------A----------ATATATATACATATACACATATAAAGA-----AGTATTCAAAAACCAATAGAAGAGAATCTTCCATAGATAAGGAAAG------TTAGACATCTACAAATTGAAAAGACTCA------GAATGGT-------CAGAGTAATA----------GGGTCAGGGTAGAAATCCTCACCAAATTCATCTCCATgaaaaagtcatctataaaagaggatgaatcaaacaggcatcccattttccatca
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138506468  847 + 170955103 ccaggtgatcaaggttaacatcatcataa--gtcatgttgattataggtatccctgatattttgtgatgagaattgtcctacacatctgt--------ggttttatcccccaaacaaattgttcctgtctagccattta--aaaattcaaca-aaacccaaaatg-agaacatgctataaagtacctt--------cctcaaaactgtcaaggtcatcaaaaacaaggaaagcctgagaaactgtcacagacgagaggagcctaggctgacatgacaactaaatataacgaggcattctggatgggatcccgaaatgaagaaagaacattaggtaaaag-taagaaaaattgagtagagtacaggctttagttagtcacaatgcagcagaattagtccattaattgtaactattgaac-----------------cacacaaatata------------------------aaatgttaacaat-------gggcaaaacagggcgt-gggtacatgggaactcctgtaccatctttgcaacttttctataaatctaaaactattctaaaat-----------------aaaaT----------------------CTGACTTCAAAATACATGTAAATAGA--CAT---------------------ACATGTAGTGCAGTCCTCAATTCT--------------TAAAATCAACTAACATATTTA-TTTGTTACATAT----TTATTT-AAAAATTAAGAATTGATTG-----------AAACATGGGGA-------------------CAATAAAAAG-------A----------atatatatacatatacatatataAAGA-----AGTATTCAAAAACCAATAGAAGAGAATCTTCCAGAGATAAGGAAAG------TTAGACATCTACAGAATGAAAAGACTCA------GAATGGT-------CAGAGTAATA----------GGGTCAGTGTAGAAATCCTCACCAAATTCATCTCCATGaaaaagtcatctatagaagagcatggatcaaacaggcatcccatttcccatca
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      213262  850 +    407600 ccaggtgatcaaggttaacatcatcataa--gtcatgttgattataggtatccctgatattttgtgatgagaattgtcctacgcatctgt--------ggttttatcccccaaacaaattgttcctgtctagccattta--aaaattcaaca-aaaccc--aatg-agaacatgctataaagtacctt--------cctcaaaactgtcaaggtcatcaaaaacaaggaaagcctgagaaactgtcacagacgagaggagcctaggctgacatgacaactaaatataacaaggcattctggatgggatcccgaaatgaagaaagaacattaggtaaaag-taagaaaaattgagtagggtacaggctttagttagtcacaatgcagcagaattagtccattaattgtaactattgaac-----------------cacacaaatata------------------------aaatgttaacaat-------gggcaaaacagggcgt-gggtacatgggaactcctgtaccatctttgcaacttttctataaatctaaaactattc-----t-----------------aaaat----------------------CTGACTTCAAAATACATGTAAATAGA--CAT---------------------ACATGTAGTGCAGTCCTCAATTCT--------------TAAAATCAACTAACATATTTA-TTTGTTACATAT----TTATTT-AAAAATTAAGAATTGATTG-----------AAACATGGGGA-------------------CAATAAAAAG-------AatatatatacatatatatacatatacatatataAAGA-----AGTATTCAAAAACCAACAGAAGAGAATCTTCCAGAGATAAGGAAAG------TTAGACATCTACAGAATGAAAAGACTCA------GAATGGT-------CAGAGTAATA----------GGGTCAGGGTAGAAATCCTCACCAAATTCATCTCCATGaaaaagtcatctatagaagagcatggatcaaacaggcatcccatttcccatca
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       85211  847 +    463628 ccaggtgatcaaggttaacatcatcataa--gtcctgttgattataggtatccctgatattttgtgatgagaattgtcctatgcattggt--------ggttttatcccccaaacaaattgttcctgtctaaccattta--aaaaatcaaca-aaacccaaaacg-agaacatgctataaagtacctt--------cctcaaaactgtcaaggtcatcaaaaacaaggaaagcctgagaaactgtcacagacgagaggagcctaggctgacatgacaactaaagataacgaggcattctggatgggatcccgaaatgaagaaagaacattaggtaaaag-taagaaaaactgagtagagtacaggctttagttagtcacaatgcagcagaattagtccattaattgtaactattgaac-----------------cacacaaatata------------------------aaatgttaacaat-------gggtgaaacagggcgt-gggtacatgggaactcctgtaccatctttgcaacttttctataaatctaaaactattctaaaat-----------------caaaT----------------------CTGACTTCAAAATACATGTAAATAGA--CAC---------------------ACATGTAGTGCAGTCCTCAATTCT--------------TAAAATCAACTAACATATTTA-TTTGTTACATAT----TTATTT-AAAAATTAAGAATTGATTG-----------AAACATGGGGA-------------------CAATAAAAAG-------A----------atatatatacatatacatatataAAGA-----AGTATTCAAAAACCAATAGAGGAGAATCTTCCAGAGATAAGGAAAG------TTAGACATCTACAGATTGAAAAGACTCA------GAATGGT-------CAGAGTAATA----------GGGTCATGGTAGAAATCCTCACCAAATTCATCTCCATGaaaaagtcatctataaaacagcacgaatcaaacaggcatcccatttcccatca
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39663684  845 +  71996105 ccaggtgatcagggttaacatcgtcataa--gtcatgttgattataggtatccctgatattttgtgatgagaattgtcctacgcatctgt--------ggttttatcccccaaacaaattgttcctgtctaaccattta--aaaaatcaaca-aaacccaaaatg-agaacatgctataaagtacctt--------cctcaaaactgtcaaggtcatcaaaaacaaggaaagcctgagaaactgtcacagacaagaggagcctaggctgatatgacaaataaaaataacgaagcattctggatgggatcccgaaatgaagaaagaacattaggtaaaag-taagaaaaattgagtagagtacaggctttagttagtcacaatgcagcataattagtccattaattgtaactattgaac-----------------cacacaaatata------------------------aaatgttaacaat-------gggtgaaacagggcgtggggtacatgggaactcctgtaccatctttgcaacttttctataaatctagaactattctaaaat-----------------aaaat----------------------ctgacttcaaaaTACATGTAAATAGA--CAT---------------------ACATGTAGTGTAGTCCTCAATTCT--------------TAAAATCAACTAAC--ATCTA-CTTGTTACATAT----TTATTT-AAAAATTAAGAATTGATTG-----------AAAAATGGGGA-------------------CAATAAAAAG-------AA-----------AAATATGTGTATATTTACATgaaga-----agtattcaaaaaccaatagaagagaatcttccagagataaggaaag------ttagacatctacaaattgaaaagactca------GAATGGT-------CAGAGTAATA----------GGGTCAGGGTAGAAATCCTCACCAAATTCATCTCCATGaaaaagccatctataagagaggatgaatcaaacaggcatcccattttccatca
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       86724  858 -    115496 ccaggtgatcaaggttaacatcgtcataa--gtcatgttgattataggtatccctgatattttgtgatgagaattgtcctacgcatctgt--------ggttttatcttccaaacaaattgttcctgtctagtcattta--aaaattcaaca-aaacccaaaatg-agaacatgctataaagtacctt--------cctcaaaactgtcaaggtcatcaaaaacaaggaaagcctgagaaactgtcacagacgagagaagcctaggctgacatgacaactaaatataacgaggcattctggatgggatcccgagatgaagaaagaacattaggtaaaag-taagaaaaattgagtagcgtacaggctttagttagtcacaatgcagcagaattagtccattaattgtaactattgaac-----------------cacacaaatata------------------------aaatgttaacaat-------gggtgaaacagggcgtggggtacatgggaactcctgtaccatctttgcaacttttctataaatctaaaactattctaaaat-----------------caaaT----------------------CTGACTTCAAAATACATGTAAATAGA--CAT---------------------ACATGTAGTGCAGTCCTCAATTCT--------------TAAAATCAACTAACATATTTA-TTTGTTACATAT----TTATTT-AAAAATTAAGAATTGATTG-----------AAAAATGGGGA-------------------CAATAAAAAG-------AatatatatacatatatatacatatacatatataAAGA-----AGTATTCAAAAACCAATAGAAGAGAATCTTCCAGAGATAAGGAAAG------TTAGACGTCTACAGATTGAAAAGACTCA------GAATGGT-------CAGAGTAATA----------GGGTCATGGTAGAAATCCTCACCAAATTCATCTCCATGaaaaagtcatctatagaagagcatgaatcaaacaggcatcccatttcccatca
i manLeu1.NW_012101600v1   C 0 C 0
s canFam3.chr12             70451286 1039 -  72498081 ccaggtgatcaagattaacgtcaaaagtgttgtcatgttgaccacatgtacccttgacatgatgtga------ctgt-ctacac-tcaatagagtgtgggcttcatccccaaaacacataactcttgtctaaccatttaagaaaaatgaagacaaaccctaattgaaggacattctataaaatactttgtcagaactcttcaaaccatcaaagtaattaaaaat----aaattatgagaaatcgtcatagccaagagtggcctaggttgacatgacaaattaatgtaatatggta-tctggataaaatactagaacagaaaaagagaattaggtaaaaactaaggaaatctgaataaggcatgaacttcagttaataataatgcatcaacattggtttattag-tgtgagtatagcactatgtaaaaatgtataatatataaatatatataaaacgtatatcattttatacaaatgtttaaaatgctaatagggtaaaccaggatg--gagtacatggcaacacctgcactaactctg-ggctcttctataaatctaaaaccattgtaaaatTgggtgggggaatggacaaaataggtgaaggggattaagaggtacaaacttccagttaca---aaatagaatcatcacagggatgagaagtatagcacagggaatatggttaataatattgtaataatatatgatgacagcaactaccttat----tgtggtaagcatggcataatgtgtagaattgtcaaatcactatgttgtacacctaaaacaaatatgttatgtcaactatacttcagtaaaaaGTCATTGTAAAA-------ATTAATATAAATACACACATAGTGGAATCCACAATTTTTGAAATTCATTA------ACCTATTTATAAATTAAGAAAGAATTGATTAAAAATGGGAACAGTGAAAAGAAATATATATGCAATGTTATATATACATAACAATATATATACACTGAGACAAGG-AGAAATCTTCACCAAGTAAATCTCTATGAAAAGATTATCTATAAAAGGACAtgttctaatatgg-----gactttctacca
i canFam3.chr12            I 34134 I 173
e cebCap1.NW_016107339v1    14064522    0 +  15232693 C
e aotNan1.NW_018508875v1      314235    0 +    446445 C
e calJac3.chr4             138692208    0 - 171630274 C
e saiBol1.JH378315            247352    0 +   1154217 C

a score=1472487.000000
s hg38.chr6_KI270758v1_alt     74364 310 +     76752 gcattattacataatagaaaccagtacagtaatgccttctaatttctgaggtgatcaagagtttaatatttagctagaatataaatagtatcttgggagaaag--tattttttgttatgcatggtctcagaaatcttacctactacataatccgttggaaaaatattgaagataatatcccagaggaatgaaGGCCTAAGCCAAGAGACTGGATCCAATCCAGTTGAATAGTGATAAGAATTTCAAAGTAACAAATGGCAGGAGATTCAGAAAGTATTCAAGGTTGCAGAAGCTGTGACTCCATTAAAATTG
s panTro5.chr6             142776707 310 - 175400573 gcattattacataagagaaaccaggacagtaatgccttctaatttctgaggtgatcaagaggttaatatttagctagaatataaatagtatcttgggagaaag--tattttttgttatgcatggtctcagaaatcttacctactacataatctgttggaaaaatattgaagataatatcccagaggaatgaaggcctaagccaagagaCTGGATCCAATCCAGTTGAATAGTGATAAGAATTTCAAAGTAACAAATGGCAGGAGATTCAGAAAGTATTCAAGGTTGCAGAAGCTGTGACTCCATTAAAATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140924302 310 - 173848474 gcattattacataagagaaaccaggacagtaatgccttctaatttctgaggtgatcaagaggttaatatttagctagaatataaatagtatcttgggagaaag--tattttttgttatgcatggtctcagaaatcttacctactacataatctgttggaaaaatattgaagataatatcccagaggaatgaaGGCCTAAGCCAAGAGACTGGATCCAATCCAGTTGAATAGTGATAAGAATTTCAAAGTAACAAATGGCAGGAGATTCAGAAAGTATTCAAGGTTGCAGAAGCTGTGACTCCATTAAAATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2442119 310 +   2807050 gcattattacataatagaaaccagtacagtaatgccttctaatttctgaggtgatcaagagtttaatatttagctagaatataaatagtatcttgggagaaag--tattttttgttatgcatggtctcagaaatcttacctactacataatccgttggaaaaatattgaagataatatcccagaggaatgaaGGCCTCAGCCAAGAGACTGGATCCAATCCAGTTGAATAGTGATAAGAATTTCAAAGTAACAAATGGCAGGAGATTCAGAAAGTATTCAAGGTTGCAGAAGCTGTGACTCCATTAAAATTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45762112 309 - 122973662 gcattattacataatagaaaccagtacagcaatgccttctaatttctgaggtgatcaag-gtttaatatttagctagaatataaatagcatcttgggagaaag--tatttttagttatgcatggtctcagaaatcttacctactacataatccgttgggaaaatattgaagataataccccagaggaatgaaggcctaagccaagaGACTGGATCCAATCCAGTTGAATAGTGATAAGAATTTCAAAGTAACAAATGGCAGGAGATTCAGAAAGTATTCAAGGTTGCAGAAGCTATGACTCCGTTAAAATTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139340045 312 - 172585720 gcattattacataatagaaaccagtacagcaatgccttgtaatttctgaggtgatcaagagtttaatatttaactagaatatgaataatattttgggagaaagaatgtttttagttatgcatggtctcagaaatcttacctactatataatctgttgggaaaatattgaagataatactccagaggaatgaagacctaagccaagagaCTGGATCCAATCTAGTTGAATAGTGGTAAGAATTTCAAAGTAACAAATGGCAGGAGATTCGGAAAGTATTCAAGGTTGCAGAAGGTGTGACTCCATTAAAATTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138507315 312 + 170955103 gcattattacataatagaaaccagtacagcaatgccttctaatttctgaggtgatcaagagtttaatatttagctagaatacaaataatattttgggagaaagaatgtttttagttatgcatggtctcagaaatcttacctactatataatctgttgggaaaatattgaagataatactccagaggaatgaagacctaagccaagaGACTGGATCCAATCTAGTTAAATAGTGATAAGAATTTCAAAGTAACAAATGGCAGGAGATTCGGAAAGTATTCAAGGTTGCAGAAGCTGTGACTCCATTAAAATTG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      214112 312 +    407600 gcattattacataatagaaaccagtacagcaatgtcttctaatttctgaggtgatcaagagtttaatatttagctagaatacaaataatattttgggagaaagaatatttttagttatgcatggtctcagaaatcttacctactatataatctgttgggaaaatattgaagataatactccagaggaatgaagacctaagccaagaGACTGGATCCAATCTAGTTAAATAGTGATAAGAATTTCAAAGTAACAAATGGCAGGAGATTCGGAAAGTATTCAAGGTTGCAGAAGCTGTGACTCCATTAAAATTG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       86058 312 +    463628 gcattactacataatagaaaccagtacagcaatgccttctaatttctaaggtgatcaagagtttaatatttagctagaatacaaataatattttaggagaaagaatatttttagttatgcatggtctcagaaatcttacctactatataatctcttgggaaaatattgaagataatactccagaggaatgaagacctaagccaagaGACTGGATCCAGTCTAGTTAAATAGTGATAAGAATTTCAAAGTAACAAATGGCAGGAGATTCGGAAAGTATTCAAGTTTGCAGAAGCTGTGACTCCATTAAAATTG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39664529 312 +  71996105 gcattattacataatagaaaccagtacagcaatgccttctaatttctgaggtgatcaagagtttaatatttagctagactataaataatattttgggagaaagaatgtttttagttacgcatggtctcagaaatcttacctactatataatctgttgggaaaatattgaagataatactccagaggaatgaagacctaagccaagagaCTGTATCCAATCTAGTTGAATAGTGGTAAGAATTTCAAAGTAAAAAATGGCAGGAGATTCGTAAAGTATTCAAGGTTGCAGAAGGTGTGACTCCATTAAAATTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       87582 312 -    115496 gcattattacataatagaaaccagtacagcaatgccttctaatttctgaggtgatcaagagtttaatatttagctagactacaaataatattttgggagaaagaatatttttagttatgcatggtctcagaaatcttacctactatataatctcttgggaaaatattgaagataatactccagaggaatgaagacctaagccaagaGACTGGATCCAGTCTAGTTAAATAGTGATAAGAATTTCAAAGTAACAAATGGCAGGAGATTCGGAAAGTATTTAAGTTTGCAGAAGCTGTGACTCCATTAAAATGG
i manLeu1.NW_012101600v1   C 0 C 0
e cebCap1.NW_016107339v1    14064522   0 +  15232693 C
e aotNan1.NW_018508875v1      314235   0 +    446445 C
e calJac3.chr4             138692208   0 - 171630274 C
e canFam3.chr12             70452325 173 -  72498081 I
e saiBol1.JH378315            247352   0 +   1154217 C

a score=411798.000000
s hg38.chr6_KI270758v1_alt     74674 80 +     76752 TAAAGTGGAAACTCAAGGATATATTTATGGTAAGTTTTAGCTTAAAAGATTTGTATTAAAGGATATCACATGGCACACCA
s panTro5.chr6             142777017 80 - 175400573 TAAAGTGGAAACTCAAGGATATATTTATGGTAAGTTTTAGCTTAAAAGATTTGTATTAAAGGATATCACATGGCACACCA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140924612 80 - 173848474 TAAAGTGGAAACTCAAGGATATATTTATGGTAAGTTTTAGCTTAAAAGATTTGTATTAAAGGATATCACATGGCACACCA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2442429 80 +   2807050 TAAAGTGGAAACTCAAGGATATATTTACGGTAAGTTTTAGCTTAAAAGATTTGTATTAAAGGATATCACATGGCACACCA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45762421 80 - 122973662 TAAAGTGGAAACTCAAGGATCTATTTCTGGTAAGTTTTAGCTTAAAAGATTTGTATTAAAGGATATCACATGGCACACCA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139340357 80 - 172585720 TAAAGTGGAAACTCAAGGATCTATTTCTGTTAAGTTTTAGCTGAAAAGATTTGTATTAAAGGATATCACATGGCATACCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138507627 80 + 170955103 TAAAGTGGAAACTCAAGGATCTATTTCTGTTAAGTTTTAGCTGAAAAGATTTGTATTAAAGGATATCACATGGCATACCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      214424 80 +    407600 TAAAGTGGAAACTCAAGGATCTATTTCTGTTAAGTTTTAGCTGAAAAGATTTGTATTAAAGGATATTACATGGCATACCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       86370 80 +    463628 TAAAGTGGAAACTCAAGGATCTATTTCTGTTAAGTTTTAGCTGGAAAGATTTGTATTAAAGGACATCACATGGCATACCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39664841 80 +  71996105 TAAAGTGGAAACTCAAGGATCTATTTCTGTTAAGTTTTAGCTGAAAAAATTTGTATTAAAGGACATCACATGGCATACCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       87894 80 -    115496 TAAAGTGGAAACTCAAGGATCTATTTCTGTTAAGTTTTAGCTGAAAAGATTTGTATTAAAGGATATCACATGGCATACCA
i manLeu1.NW_012101600v1   C 0 C 0
s canFam3.chr12             70452498 73 -  72498081 TAAACTGGAAAGGAAAGAATTTACTTCTGGGAAATGTTAGCTGAAAAGGGTTGTATTAAAGGATAGCACACAA-------
i canFam3.chr12            I 173 C 0
e cebCap1.NW_016107339v1    14064522  0 +  15232693 C
e aotNan1.NW_018508875v1      314235  0 +    446445 C
e calJac3.chr4             138692208  0 - 171630274 C
e saiBol1.JH378315            247352  0 +   1154217 C

a score=55320.000000
s hg38.chr6_KI270758v1_alt     74754 11 +     76752 ACTATTTGGTA
s panTro5.chr6             142777097 11 - 175400573 ACTATTTGGTA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140924692 11 - 173848474 ACTATTTGGTA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2442509 11 +   2807050 ACTATTTGGTA
i gorGor5.CYUI01000036v1   C 0 C 0
s rheMac8.chr4             139340437 11 - 172585720 ACTATTTGGTA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138507707 11 + 170955103 ACTATTTGGTA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      214504 11 +    407600 ACTATTTGGTA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       86450 11 +    463628 ACTATTTGGTA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39664921 11 +  71996105 ACTATTTGGTA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       87974 11 -    115496 ACTATTTGGTA
i manLeu1.NW_012101600v1   C 0 C 0
s canFam3.chr12             70452571 11 -  72498081 ACTACTTGGTA
i canFam3.chr12            C 0 C 0
e cebCap1.NW_016107339v1    14064522  0 +  15232693 C
e aotNan1.NW_018508875v1      314235  0 +    446445 C
e calJac3.chr4             138692208  0 - 171630274 C
e saiBol1.JH378315            247352  0 +   1154217 C
e nomLeu3.chr1a             45762501  0 - 122973662 C

a score=6006.000000
s hg38.chr6_KI270758v1_alt     74765 1 +     76752 A
s panTro5.chr6             142777108 1 - 175400573 A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140924703 1 - 173848474 A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2442520 1 +   2807050 A
i gorGor5.CYUI01000036v1   C 0 C 0
s rheMac8.chr4             139340448 1 - 172585720 A
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138507718 1 + 170955103 A
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      214515 1 +    407600 A
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       86461 1 +    463628 A
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39664932 1 +  71996105 A
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       87985 1 -    115496 A
i manLeu1.NW_012101600v1   C 0 C 0
s saiBol1.JH378315            247352 1 +   1154217 A
i saiBol1.JH378315         C 0 C 0
s canFam3.chr12             70452582 1 -  72498081 A
i canFam3.chr12            C 0 C 0
e cebCap1.NW_016107339v1    14064522 0 +  15232693 C
e aotNan1.NW_018508875v1      314235 0 +    446445 C
e calJac3.chr4             138692208 0 - 171630274 C
e nomLeu3.chr1a             45762501 0 - 122973662 C

a score=3550.000000
s hg38.chr6_KI270758v1_alt     74766 2 +     76752 GT-
s panTro5.chr6             142777109 2 - 175400573 GT-
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140924704 2 - 173848474 GT-
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2442521 2 +   2807050 GT-
i gorGor5.CYUI01000036v1   C 0 C 0
s rheMac8.chr4             139340449 2 - 172585720 GC-
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138507719 2 + 170955103 GC-
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      214516 2 +    407600 GC-
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       86462 2 +    463628 GC-
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39664933 2 +  71996105 GC-
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       87986 2 -    115496 GC-
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138692208 2 - 171630274 GC-
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            247353 2 +   1154217 GC-
i saiBol1.JH378315         C 0 C 0
s canFam3.chr12             70452583 2 -  72498081 -TT
i canFam3.chr12            C 0 C 0
e cebCap1.NW_016107339v1    14064522 0 +  15232693 C
e aotNan1.NW_018508875v1      314235 0 +    446445 C
e nomLeu3.chr1a             45762501 0 - 122973662 C

a score=4248348.000000
s hg38.chr6_KI270758v1_alt     74768 549 +     76752 AGAAAGCTAGATGCTGATAC--ACTCAGGCAGTAATAATACTCCTAACC--ATCATGGGAGTTCTTCAGTGAAGACACTCCTGCCCTGCCACTGTCTGCAATCAGCTTGGAGAAGAGAGCTTATAAGGTGGAAAAATAACAACAAGCAGGCAGTGTGTTCAAAGAGGGTGGGAGCCCACAAATGACAACTG-----TCTATGGTGTGAGCATAGAAGATTCAGAGAA-AAAAACCATCCTGGATAAACTACATGCAGA----------GTGGGAAGAGAAAATACTATGAGATAAATTAAAGTGTTTTAAAGGAGTATGGGGCATGATTTTATGCAATTGCTAAAGCATAAGAACAGATAAATCATTTGGTCTGATACTAGGAAAATTCTCTTTC-----------------------------------AGAAGAAATTTTGATATAATC-----ATATATGTTTTCTGTCAGTATTCAGATTTTACAAATGGCCAATGAGCAAAAGG---TAAGACTCTTGTCCTTTCAGGAAAGAATATCAATATTAGTATCCATAACAATGTAGAAGTAAAAGTGTAACTGGTGTAACT-AGTGAAAAGTGGACAGAT---A
s panTro5.chr6             142777111 549 - 175400573 AGAAAGCTAGATGCTGATAC--ACTCAGGCAGTAATAATACTCCTAACC--ATCATGGGAGTTCTTCAGTGAAGACACTCCTGCCCTGCCACTGTCTGCAATCAGCTTGGAGAAGAGAGCTTATAAGGTGGAAAAATAACAACAAGCAGGTAGTGTGTTCAAAGAAGGTGGGAGCCCACAAATGACAACTG-----TCTATGGTGTGAGCATAGAAGATTCAGAGAA-AAAAACCATCCTGGATAAACTACATGCAGA----------GTGGGAAGAGAAAATACTATGAGATAAATTAAAGTGTTTTAAAGAAGTATGGGGCATGATTTTACGCAATTGCTAAAGTATAAGAACAGATAAATCATTTGGTCTGATACTAGGAAAATTCTCTTTC-----------------------------------AGAGGAAATTTTGATATAATC-----ATATATGTTTTCTGTCAGTATTCAGATTTTACAAATGACCAATGAGCAAAAGG---TAAGACTCTTGTCCTTTCAGGAAAGAATATCAATATTAATATCCATAACAATGTAGAAGTAAAAGTGTAACTGGTGTAACT-AGTGAAAAGTGGACAGAT---A
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140924706 549 - 173848474 AGAAAGCTAGATGCTGATAC--ACTCAGGCAGTAATAATACTCCTAACC--ATCATGGGAGTTCTTCAGTGAAGACACTCCTGCCCTGCCACTGTCTGCAATCAGCTTGGAGAAGAGAGCTTATAAGGTGGAAAAATAACAACAAGCAGGTAGTGTGTTCAAAGAAGGTGGGAGCCCACAAATGACAACTG-----TCTATGGTGTGAGCATAGAAGATTCAGAGAA-AAAAACCATCCTGGATAAACTACATGCAGA----------GTGGGAAGAGAAAATACTATGAGATAAATTAAAGTGTTTTAAAGAAGTATGGGGCATGATTTTACGCAATTGCTAAAGTATAAGAACAGATAAATCATTTGGTCTGATACTAGGAAAATTCTCTTTC-----------------------------------AGAGGAAATTTTGATATAATC-----ATATATGTTTTCTGTCAGTATTCAGATTTTACAAATGACCAATGAGCAAAAGG---TAAGACTCTTGTCCTTTCAGGAAAGAATATCAATATTAATATCCATAACAATGTAGAAGTAAAAGTGTAACTGGTGTAACT-AGTGAAAAGTGGACAGAT---A
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2442523 549 +   2807050 AGAAAGCTAGATGCTGATAC--ACTCAGGCAGTAATAATACTCCTAACC--ATCGTGGGAGTTCTTCAGTGAAGACACTCCTGCCCTGCCACTGTCTGCAATCAGCTTGGAGAAGAGAGCTCATAAGATGGAAAAATAACAACAAGCAGGCAGTGTGTTCAAAGAGGGTGGGAGCCCACAAATGACAACTG-----TCTATGGTGTGAGCATAGAAGATTCAGAGAA-AAAAACCATCTTGGATAAACTACATGCAGA----------GTGGGAAGAGAAAATACTATGAGATAAATTAAAGTGTTTTAAAGAAGTATGGGGCATGATTTTATGCAATTGCTAAAGTATAAGAACAGATAAATCATTTGGTGTGATACTAGGAAAATTCTCTTTC-----------------------------------AGAAGAAATTTTGATATAATC-----ATATATGTTTTCTGTCAGTATTCAGATTTTACAAATGACCAATGAGCAAAAGG---TAAGACTCTTGTCCTTTCAGGAAAGAATATCAATATTAGTATCCATAACAATGTAGAAGTAAAAGTGTAACTGGTGTAACT-AGTGAAAAGTGGACAGAT---A
i gorGor5.CYUI01000036v1   C 0 C 0
s rheMac8.chr4             139340451 550 - 172585720 AGAAAGCTAGACAGTGACAC--ACTCAGGCAGTAGTAATACTCCTCAGC--ATCGTGAGAGTTCTTTAGTGAAGATACTCCTGCCCTGTCACTGTTTGCAATCAGCTTGGAGAGGAGAGCTCGTAATGTGGAAAAATAACAATAAGCAGGCAGCGTGTTCAAAGAGGGTGGGAGCCCACCAATGACAACTG-----TCTATGGTGTGAGTATAGAAGATTTAGGGGA-AAAAACCATCCTGGATAAACTACACGTAGA----------GTGGGAAGAGAAAATACTATGAGATAGAT--AAGTGTTTTAAAGAAGTATGGGGCATGATTTTATGCAATTGCTGAAGTATAAGAACAGATAACTCATTTGCTCTAATACTAGGAAAATTCTCCTTC-----------------------------------AGAAGAAATTTTGATATAATC-----ATATATCTTTTCTGTCAGTATTCAGATTTTACAGATGACCAATGAGCAAAAGGTAACAAGACTCTTATCCTTTCAGGAAAGAATATCAACACTAATATCCATAACAATATAGAAGTAAAAGTGTAACTGGTGTAACT-AGTGAAGAGTGGACAGAT---G
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138507721 551 + 170955103 AGAAAGCTAGACAGTGACAC--ACTCAGGCAGTAGTAATACTCCTAAGC--ATCGTGAGAGTTCTTTAGTGAAGATACTCCTGCCCTGTCACTGTTTGCAATCAGCTTGGAGAGGAGAGCTCGTAATGTGGAAAAATAACAATAAGTAGGCAGTGTGTTCAAAGAGGGTGGGAGCCCACCAATGACAACTG-----TCTATGGTGTGAGTATAGAAGATTCAGGGAATAAAAACCATCCTGGATAAACTACACGCAGA----------GTGGGAAGAGAAAATACTATGAGGTAGAT--AAGTGTTTTAAAGAAGTATGGGGCATGATTTTATGCAATTGCTAAAGTATAAGAACAGATAACTCATTTTGTCTAATACTAGGAAAATTCTCCTTC-----------------------------------AGAAGAAATTTTGATATAATC-----ATCTATCTTTTCTGTCAGTATTCAGATTTTACAGATGACCAATGAGCAAAAGGTAATAAGACTCTTGTCCTTTCAGGAAAGAATATCAACACTAATATCCATAACAATATAGAAGTAAAAGTGTAACTGGTGTAACT-AGTGAAGAGTGGACAGAT---G
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      214518 551 +    407600 AGAAAGCTAGACACTGACAC--ACTCAGGCAGTAGTAATACTCCTAAGC--ATCGTGAGAGTTCTTTAGTGAAGATCCTCCTGCCCTGTCATTGTTTGCAATCAGCTTGGAGAGGAGAGCTCGTAATGTGGGAAAATAACAATAAGTAGGCAGCATGTTCAAAGAGGGTGGGAGCCCACCAATGACAACTG-----TCTATGGTGTGAGTATAGAAGATTCAGGGAATAAAAACCATCCTGGATAAACTACACGCAGA----------GTGGGAAGAGAAAATACTATGAGGTAGAT--AAGTGTTTTAAAGAAGTATGGGGCATGATTTTATGCAATTGCTAAAGTATAAGAACAGATAACTCATTTTGTCTAATACTAGGAAAATTCTCCTTC-----------------------------------AGAAGAAATTTTGATATAATC-----ATCTATCTTTTCTGTCAGTATTCAGATTTTACAGATGACCAATGAGCAAAAGGTAATAAGACTCTTGTCCTTTCAGGAAAGAATATCAACACTAATATCCATAACAATATAGAAGTAAAAGTGTAACTGGTGTAACT-AGTGAAGAGTGGACAGAT---G
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       86464 550 +    463628 AGAAAGCTAGACACTGACAC--ATTCAGGCAGTAGTAACACTCCTCAGC--ATCGTGAGAGTTCTTTAGTGAAGATCCTCCTGCCCTGTCATTGTTTGCAATCAGCTTGGAGAGGAGAGCTCGTAATGTGGAAAAACAACAATAAGTAGGCAGCGTGTTCAAAGAGGGTGGGAGCCCACCAATGACAACTG-----TCTATGGTGTGAGTATAGAAGATTCAGGGAA-AAAAACCATCCTGGATAAAGTACACGCAGA----------GTGGGAAGAGAAAATACTATGAGATAGAT--AAGTGTTTTAAAGAAGTATGGGGCATGATTTTATGCAATTGCTAAAGTATAAGAACAGATAACTCATTTGGTCTAATACTAGGAAAATTCTCCTTC-----------------------------------AGAAGAAATTTTGATATAATC-----ATATATCTTTTCTGTCAGTATTCAGATTTTACAGATGACCAATGAGCAAAAGGTAATAAGACTCTTGTCCTTTCAGGAAAGAATATCAATACTAATATCCATAACAATATAGAAGTAAAAGTGTAACTGGTGTAACT-AGTGAAGAGTGGACAGAT---G
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39664935 548 +  71996105 AGAAAGCTAGACACTGACAC--ACTCAGGCAGTAGTAATACTCCTAAGC--ATCGTGAGAGTTCTTCAGTGAAGATACTCCTGCCCTGTCACTGTTTGCAATCAGCTTGGAGAGGAGAGCTCGTAATGTGGAAAAATAACAATAAGCAGGCAGCGTGTTCAAAGAGGGTGGGAGCCCACCAATGACAACTG-----TCTATGGTGTGAGTATAGAAGATTCAGGGAAAAAAAACCATCCTGGATAAACTACACGCAGA----------ATGGGAAGAGAAAATACTATGAGATAGAT--AAGTGTTTTAAAGAAGTATGGGGCATGATTTTATGCAATTGCTAAAGTATAAGAACAGATAACTCATTTGGTCTAATACTAGGAAAATTCTCCTTC-----------------------------------AGAAGAAATTTTGATATAATC-----ATATATCTTTTCTGTCAGTATTCAGATTTTACAGATGACCAATGAGCAAAAGG---TAAGACTCTTGTCCTTTCAGGAAAGAATATCAATACTAATATCCATAACAATATAGAAGTAAAAGTGTAACTGGTGTAACT-AGTGAAGAGTGGACAGAT---G
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       87988 551 -    115496 AGAAAGCTAGACAGTGACAC--ACTCAGGCAGTAGTAATACTCCTCAGC--ATCGTGAGAGTTCTTTAGTGAAGATACTCCTGCCCTGTCATTGTTTGCAATCAGCTTGGAGAGGAGAGCTCGTAATGTGCAAAAATAACAATAAGTAGGCAGCGTGTTCAAAGAGGGTGGGAGTCCACCAATGACAACTG-----TCTATGGTGTGAGTATAGAAGATTCAGGGGAAAAAAACCATCCTGGATAAACTACACAAAGA----------GTGGGAAGAGAAAATACTATGAGATAGAT--AAGTGTTTTAAAGAAGTACGGGGCATGATTTTATGCAATTGCTAAAGTATAAGAACAGATAACTCATTTGGTCTAATACTAGGAAAATTCTCCTTC-----------------------------------AGAAGAAATTTTGATATAATC-----ATATATCTTTTCTGTCAGTATTCAGATTTTACAGATGACCAATGAGCAAAAGGTAATAAGACTCTTGTCCTTTCAGGAAAGAATATCAACACTAATATCCATAACAATATAGAAGCAAAAGTGTAACTGGTGTAACT-AGTGAAGAGTGGACAGAT---G
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138692210 547 - 171630274 AGAAAGCTAGACTCTGACAC--ACTCAAGCAGTAATAATGCTCCTAAACTAATTGTCAGAGTTCTTTAGTGAAGATACTCCTGCTCTGCCACGGTCTGCAATCAGCTTGGAGAGGAGAGCTCGTAATGTGGAAAAATAACAAT-AGCAGGCAGCGTGTTTGAAGA-GGTGGGAACCCACAAATGACAACTG-----TCTATGGTGTGAGCATAGACAACTCAGAGAA-AACAAGTATCCTGGATAAACTACGTGCAGA----------GTGGGAAGAGGAAATACTATAAGATAAATTAAGGTGTTTTAAAGAAGTATGGGGCATGATTTTATGCCATTGCTAAAGTATAAGAACAGATCAATCATTTGGTCTAATACTATGAATATTTTCCTTC-----------------------------------AGAAGAAATTTTGATATAATCATTTAATGGATGTTCTCTGTCAGTATTCAGATTTTACAGATGACCAATGAGCAAAAGG---TAAGACTCTTGTCACTTCAGGAAAGAATATGAATATTAATATCCATAACAATATAGGAGTAAAAGTGTAA-TG----------TTGAAAAGTGGACAGACACTA
i calJac3.chr4             C 0 C 0
s saiBol1.JH378315            247355 544 +   1154217 AGAAAGCTATACTCTGACACTTACTTAAGCTGTAATAATACTCCTAAAC--ATTGTGAGAGTTCTTTAGTGAAGATACTCCTGCTCTGCCACTGTCTGCAATCAGCTTGGAGCAGAGAGCTCGTAATGTGGAAAAATAACAAT-AGCAGGCAGCGTGTTTAGAGAGGGTGGGAACCCGCAAATGACAACTG-----TCTATGGGGTGAGTATAGACGACTCAGAGAA-AACAATTATCCTGGATAAACTACGTGCAGA----------GTAGGAAGAGAAAATACCATGACATAAATTAAGGTGTTTTAAAGAAGTATGGGGCATGATTTTATGCAATTGCTAAAGTATAAGAACAGATACATCATTTGGTCTAGTACCAGGAATATTTTCCGTC-------------------------------------AAGAAATTTTGATATAATCATTTAATATGTGTTCTCTGCCAGTATTCAGATTTTACAGATGACCAACGAGCAAAAGG---TAAGACTCTTGTCATTTCAGGAAAGAATATCAATATTAATATCCATAACAATATAGAAGTAAAAGTGTAACTG----------TTGAAAAGTGGACAGAC---A
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14064522 544 +  15232693 AGAAAGCTAGACTCCGACAC--ACTCAGGCAGTAATGATACTCCTAAAC--ATTGTTAGAGTTCTTTAGTGAAGATACTTCTTCTCTGCCACTGTCTGCAATCAGCTTGGAGAGGAGAGCTTGTAATGTGGAAACACAACAAT-AGCAGGCAGCATGTTCGAAGAGGGTGGGAACCCACAAATGACAACTG-----TCTATGGTGTGAGTATAGACGACTCAGAGAA-AACAATTTTCCTGGATAAACTATGTGCAGA----------GTGGGAAGAGAAAATACTATGACATAAATTAAGGTGTTTTAAAGAAGTATGGGGCATGATTTTATGCAATTGCTAAAGTATAAGAACAGATAAATCATTTGGTCTAGTACTAGGAACATTTTCCTTC-----------------------------------AGAAGAAATTTTGATATAATCATTTAATATATGTTCTCTGTCAGTATTCAGATTTTACAGATGACCAATGAGCAAAAGG---TAAGACTCTTGTCATTTCAGGAAAGAATATCAATATTAATATCCATAACAATATAGAAGTAAAAGTGTAACTG----------TTGAAAAGCGGACAGAC---A
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      314235 544 +    446445 AGAAAGCTAGACTCTGACAC--ACTCGGGCAGTAATAATACTCCTAAAC--ATTGTGAGAGTTCTTTAGTGAAGATACTCCTGTTCTGACACTGTCTGCAATCAGCTTGGTGAGGAGAGCTTGTAATGTGGAAAAATAACAAT-AGCAGGCAGCGTGTTTAAAGAGGGTGGGAACCCACAAATGACAACTG-----TCTATGGTGTGAGTATAGAAGATTCAGAGAA-AACAATTGTCCTGGATAAACTACATGCAGA----------GTGGGAAGAGAAAATACTATGAGATAAATTAAGGTGTTTTAAAGAAGTATGGGGCATGATTTTATGCAATTGCTAAAGTATAAGAACAGATAAATCATTTGGTCTAGTACTAGGAATATTTTCCTTC-----------------------------------AGAAGAAATTTTGATATAATCATTTAATATATGTTCTCTGTCAGTATTCAGATTTTACACATGACCAATGAGCAAAAGG---TAAGATTCTTGTCATTTCAGGAAAGAATATCAATATTAATATCCATAACAATATAGAAGTAAAAGTGTAACTG----------TTGAAAAGCGGACAGAC---A
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70452585 593 -  72498081 ATAAAGCTAGATTCTCATGA--ACATGAGCAGTAATAGAACTCCTAGCC--ATCATGGGAGCTGTTTAGAGAAAACAC--CTGTATCACCGGTGTCTACGTTCCACTT-GAGAGGAAAGCCTCTAATGTGGGAAAATTATAGCAAGCAAGGAGAATGTTCAAAGAGGGTGGAAAACCACAAATGACAACTGATGCTCCAAAGATTTAAGTGCAGAGCATTCAGAGA--GTAAATTATCCTGCAAAAAAAATATAGAGAGAAGTGGAAGGTTGGCAGAAACGGTAACTTGAGAAAAGTTGAGGTATTTTAAAGAAGTATAAGGTATGATCTTAAGCAATTGCTGAAGTGTAAGAACAGATACATCATTTAGTATGATACCAGGAATAGTCTCCTTCTGGTGACCTAGAAGTTATGATATTGAACTTGGAAAAAAAGCAACTTTTATAGAATCATAAAGTAAATGTTTTCTGTCGGTACTCAGA--TTGGAGATAACCAATGAGCAAAAGG---GAAAAGACTTGTGTGTACA------AATATCAATATTAATACCCTTAACAATATAGAAGCTAAAGTGTAACTGGTATAACTGAGTTAAGATTGGACAAAT---A
i canFam3.chr12            C 0 I 783
e nomLeu3.chr1a             45762501   0 - 122973662 C

a score=125159.000000
s hg38.chr6_KI270758v1_alt     75317 23 +     76752 TTTTTGTATGGGTGAAGGAGGAA
s panTro5.chr6             142777660 23 - 175400573 CTTTTGTATGGGTGAAGGAGAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140925255 23 - 173848474 CTTTTGTATGGGTGAAGGAGAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2443072 23 +   2807050 TTTTTGTATGGGTGAAGGAGGAA
i gorGor5.CYUI01000036v1   C 0 C 0
s rheMac8.chr4             139341001 23 - 172585720 CTTTTGTAGGAGTGAAGGAGGAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138508272 23 + 170955103 CTTTTGTAGGAGTGAAGGAGGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      215069 23 +    407600 CTTTTGTAGGAGTGAAGGAGGAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       87014 23 +    463628 CTTTTGTAGGAGTGAAGGAGGAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39665483 23 +  71996105 CTTTCGTAGGAGTGAAGGAGGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       88539 23 -    115496 CTTTTGTAGGAGTGAAGGAGGAA
i manLeu1.NW_012101600v1   C 0 C 0
s calJac3.chr4             138692757 20 - 171630274 GTCATAGGTGATAGTAGGAA---
i calJac3.chr4             C 0 N 0
s saiBol1.JH378315            247899 23 +   1154217 GTTTTGTGTGGGTGTAGGAAGAA
i saiBol1.JH378315         C 0 I 2
s cebCap1.NW_016107339v1    14065066 23 +  15232693 CTTTTGTGTAGGTGTAGGAAGAA
i cebCap1.NW_016107339v1   C 0 I 2
s aotNan1.NW_018508875v1      314779 23 +    446445 CTTTTGTGTGGGTGTAGGAAGAA
i aotNan1.NW_018508875v1   C 0 I 2
e canFam3.chr12             70453178 783 -  72498081 I
e nomLeu3.chr1a             45762501  0 - 122973662 C

a score=171586.000000
s hg38.chr6_KI270758v1_alt     75340 29 +     76752 AATGGAGGAATGTCAGAAGCGAATATCCG
s panTro5.chr6             142777683 29 - 175400573 AATGGAGGAATGTCAGAAGCGAATATCCG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140925278 29 - 173848474 AATGGAGGAATGTCAGAAGCGAATATCCG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2443095 29 +   2807050 AATGGAGGAATGTCAGAAGCGAATATCCG
i gorGor5.CYUI01000036v1   C 0 C 0
s rheMac8.chr4             139341024 29 - 172585720 AATGGAGGAATGTCTGAAGCGAATATCCA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138508295 29 + 170955103 AATGGAGGAATGTCTGAAGCGAATATCCA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      215092 29 +    407600 AATGGAGGAATGTCTGAAGCGAATATCCA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       87037 29 +    463628 AATGGAGGAATGTCTGAAGCGAATATCCA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39665506 29 +  71996105 AACGGAGGAATGTCTGAAGCGAATATCCA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       88562 29 -    115496 AATGGAGGAATGTCTGAAGCGAATATCCA
i manLeu1.NW_012101600v1   C 0 C 0
s saiBol1.JH378315            247924 29 +   1154217 TGCGGAGGAATGTGAGAAGTGAATATCCG
i saiBol1.JH378315         I 2 C 0
s cebCap1.NW_016107339v1    14065091 29 +  15232693 TGTGGAGGAATGTGAGAAGTGAATATGCG
i cebCap1.NW_016107339v1   I 2 C 0
s aotNan1.NW_018508875v1      314804 29 +    446445 TGTGGAGGAAAGTGAGAAGTGAATATCCA
i aotNan1.NW_018508875v1   I 2 C 0
e canFam3.chr12             70453178 783 -  72498081 I
e nomLeu3.chr1a             45762501  0 - 122973662 C

a score=47325.000000
s hg38.chr6_KI270758v1_alt     75369 6 +     76752 CATAGA
s panTro5.chr6             142777712 6 - 175400573 CATAGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140925307 6 - 173848474 CATAGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2443124 6 +   2807050 CATAGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45762501 6 - 122973662 CATAGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139341053 6 - 172585720 CATAGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138508324 6 + 170955103 CATAGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      215121 6 +    407600 CATAGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       87066 6 +    463628 CATAGA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39665535 6 +  71996105 CATAGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       88591 6 -    115496 CATAGA
i manLeu1.NW_012101600v1   C 0 C 0
s saiBol1.JH378315            247953 6 +   1154217 CACAGA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14065120 6 +  15232693 CACAGA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      314833 6 +    446445 CACAGA
i aotNan1.NW_018508875v1   C 0 C 0
e canFam3.chr12             70453178 783 -  72498081 I

a score=1485508.000000
s hg38.chr6_KI270758v1_alt     75375 194 +     76752 ATGTGTAAGTCCCAGCAGT----------GCTGATATGATTTCTATAGGCGATTGCCCTCAGATGTTTGCAGAGTGTACTGCAAGTACATAAGCGTAAGAGTATTAGCTAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGT----TTTAACCTGTTGAAAGATGCTAAGAAAGAACCAACTATTAACAGTCATGCGAGGATATCTTATATG
s panTro5.chr6             142777718 194 - 175400573 ATGTGTAAGTCCCAGCAGT----------GCTGATATGCTTTCTATAGGCAATTGCCCTCAGATGTTTGCAGAGTGTACTGCAAGTACATAAGCCTAAGAGTATTAGCTAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGT----TTTAACCTGTTGAAAGATGCTAAGAAAGAACCAACTATTAACAGTCATGCGAGGATATCTTATATG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140925313 194 - 173848474 ATGTGTAAGTCCCAGCAGT----------GCTGATATGATTTCTATAGGCGATTGCCCTCAGATGTTTGCAGAGTGTACTGCAAGTACATAAGCCTAAGAGTATTAGCTAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGT----TTTAACCTGTTGAAAGATGCTAAGAAAGAACCAACTATTAACAGTCATGCGAGGATATCTTATATG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2443130 194 +   2807050 ATGTGTAAGTCCCAGCAGT----------GCTGATATGATTTCTATAGGCGATTGCCCTCAGATGTTTGCAGAGTGTACTGCAAGTACATAAGCCTAAGAGTATTAGCTAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGT----TTTAACCTGTTGAAAGATGCTAAGAAAGAACCAACTATTAACAGTCATGCGAGGATATCTTATATG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45762507 194 - 122973662 ATGTGTAAGTCCCATCAGT----------GCTGATATGATTTCTGTAGGCGATTGCCCTCTGATGTTTGCAGAGCGTACTGCAAGTACATAAGCCTAAGAATATTAGCAAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGT----TTTAACCTGTTGAAAGATACTAAGAAAGAACCAACTATTAACAGTCATGCGAGGATATCTTATATG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139341059 197 - 172585720 ATGTGTAAGTCCCAGCAAT----------GCTGATGTGATTTCTATAGGCGATTGCCCTCTGGTGTTTGCAGAGTGTACTGCAAGTACATAAGCCTAAGAGTATTAGCTAAGCACGTAAAAATGTG------------------------------------TTT-CCAGTGTGTTTTATTTAACCTGTTGAGAGATGCTAAGAAAGAACCAACTGTTAG-AGTCATGCGAGGCTATCTTATATG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138508330 197 + 170955103 ATGTGTAAGTCCCAGCAAT----------GCTGATATGATTTCTATAGGCGATTGCCCTCTGGTGTTTGCAGAGTGTACTGCAAGAACATAAGCCTAAGAGTATTAGCTAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGTTTTATTTAACCTGTTGAGAGATGCTAAGAAAGAACCAACTGTTAG-AGTCATGCGAGGCTATCTTATATG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      215127 197 +    407600 ATGTGTAAGTCCCAGCAAT----------GCTGATATGATTTCTATAGGCGATTGCCCTCTGGTGTTTGCAGAGTGTACTGCAAGAACATAAGCCTAAGAGTATTAGCTAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGTTTTATTTAACCTGTTGAGAGATGCTAAGAAAGAACCAACTGTTAG-AGTCATGCGAGGCTATCTTATATG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       87072 197 +    463628 ATGTGTAAGTCCCAGCAAT----------GCTGATATGA-TTCTATAGGCGATTGCCCTCTGGTGTTTGCAGAGTGTACTGCAAGTACATAAGCCTAAGAGTATTAGCTAAGCACATGAAAACGTG------------------------------------TTTCCCAGTGTGTTTTATTTAACCTGTTGAGAGACGCTAAGAAAGAACCAACTATTAG-AGTCATGTTAGGCTATCTTATATG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39665541 197 +  71996105 ATGTGTAAGTCCCAGCAAT----------GCTGATGTGATTTCTATAGGCGATTGCCCTCTGGTGTTTGCAGAGTGTACTGCAAGTATATAAGCCTAAGAGTATTAGCTAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGTTTTATTTAACCTGTTGAGAGACGCTAAGAAAGAACCAACTATTAG-AGTCATGTGAGGCTATCTTATATG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       88597 198 -    115496 ATGTGTAAGTCCCAGCAAT----------GCTGATGTGATTTCTATAGGCGATTGCCCTCTGGTGTTTGCAGAGTGTACTGCAAGTACATAAGCCTAAGAGTATTAGCTAAGCACATGAAAACGTG------------------------------------TTTCCCAGTGTGTTTTATTTAACCTGTTGAGAGACGCTAAGAAAGAACCAACTATTAG-AGTCATGTTAGGCTATCTTATATG
i manLeu1.NW_012101600v1   C 0 C 0
s saiBol1.JH378315            247959 190 +   1154217 ACGTGTAAGTCCCAGCAAT----------GCTGATATGAGTTCTACAGGCGATTGTCCTC---TATTTGCAAAGTGTACTGCAAGTACATAAGCCTAAGAGTATTAGCTAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGT----TTTAACCTGTTCAGAGATGCTAAGAAAGAACCAACTATTAC-AGTCATATAAGGATATCTTATATG
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14065126 190 +  15232693 ACGTGTAAGTCCCAGCAAT----------ACTGATATGAGCTCTACAGGCGATTGCCCTC---TGTGTGCAAAACGTACTGCAAGTACATATGCCTAAGGGTATTAGCTAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGT----TTTAACCTGTTGAAAGATGCTAAGAGAGAACCAACTATTAC-AGTCATATGAGGATATCTTACATG
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      314839 186 +    446445 ACGTGTAAGTCCCCGAAAT----------ACTGATATGAGTTCTACAGGCGATTGCCCGC---TGTTTCTAAAGTGTACTGCAAGTACATAAGCCTAAGAGTATTAGCTAAGCACATGAAAATGTG------------------------------------TTT-CCAGTGTGT----TTTAACCTGTTGAGAGATGCTA----AGAACCAACAATTAC-AGTGATATGAGGATATCTTATAGG
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70453961 232 -  72498081 atatataATTCCCAGCAATGCTTTTTAAAGCTAATACAATTTCTGTAGATG-CTGCCCTCTCATGTTTGTGGAGTATACTGCAAG----TAAGTCTAAGACCA--GGCTGAGTATATAAAAAAAAGCTTCTGAAAACAAATCAAGAAGCAATAAGAGAGTCATTT-CTAGTGTCT----TTTAACCTTTTGAGCAATACTAGTAAAAAGCCAACTACTAT-AGTCATGTAAGGATATATAGTATG
i canFam3.chr12            I 783 I 372

a score=13780.000000
s hg38.chr6_KI270758v1_alt     75569 2 +     76752 AA
s panTro5.chr6             142777912 2 - 175400573 AA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140925507 2 - 173848474 AA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2443324 2 +   2807050 AA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45762701 2 - 122973662 AA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139341256 2 - 172585720 AA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138508527 2 + 170955103 AA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      215324 2 +    407600 AA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       87269 2 +    463628 AA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39665738 2 +  71996105 AA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       88795 2 -    115496 AA
i manLeu1.NW_012101600v1   C 0 C 0
s saiBol1.JH378315            248149 2 +   1154217 AA
i saiBol1.JH378315         C 0 C 0
s cebCap1.NW_016107339v1    14065316 2 +  15232693 AA
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      315025 2 +    446445 AT
i aotNan1.NW_018508875v1   C 0 C 0
e canFam3.chr12             70454193 372 -  72498081 I

a score=993599.000000
s hg38.chr6_KI270758v1_alt     75571 127 +     76752 TGCATAAATTTAAAATAAATGCACTGTTTAAAACTTACCAGTAAAACAGGTGTTAC----CATGAGGAGG---------------CAGCAGCAGGGAGGAGGGAGCCCCAAAGCTGGTGTGCATGGGAAGGGAATGTCTCATAGGA
s panTro5.chr6             142777914 127 - 175400573 TGCATAAATTTAAAATAAATGCACTGCTTAAAACTTACCAGTAAAACAGGTGTTAC----CATGAGGAAG---------------CAGCAGCAGGGAGGAGGGAGCCCCAAAGCTGGTGTGCATGGGAAGGGAATGTCTCATAGGA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140925509 127 - 173848474 TGCATAAATTTAAAATAAATGCACTGCTTAAAACTTACCAGTAAAACAGGTGTTAC----CATGAGGAAG---------------CAGCAGCAGGGAGGAGGAAGCCCCAAAGCTGGTGTGCATGGGAAGGGAATGTCTCATAGGA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2443326 127 +   2807050 TGCATAAATTTAAAATAAATGCACTGTTTAAAACTTACCAGTAAAACAGGTGTTAC----CATGAGGAAG---------------CAGCAGCAGGGAGGAGAGAGCCCCAAAGCTGGTGTGCATGGGAAGGGAATGTCTCATAGGA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45762703 127 - 122973662 TACGTAAATTTAAAATAAATGCACTGTTTAAAGCTTACGAGTAAAACAGGTGTTAC----CATGAGGAAG---------------CAGCAGCAGGGAGGAGGGAGCCCCAAAGCTGGTGTGCATGGGAAGGGAACGTCTCATAGGA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139341258 130 - 172585720 TGTATAAATTTAAAATAAATGCACTGTTT-AAACTTACTAGTAAAACAGGTGTTACCATGCATGAGGAAG---------------CAGCAGCAGGGAGGAGGGAGCCCCGAAGCTGTTGTGCATGGGAAGGGAATGTCTCATGGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138508529 130 + 170955103 TGTATAAATTTAAAATAAATGCGCTGTTT-AAACTTACCAGTAAAACAGGTGTTACTATGCATGAGGAAG---------------CAGCAGCAGGGAGGAGGGAGGCCGGAAGCTGGTGTGCATGGGAAGGGAATGTCTCATGGGA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      215326 130 +    407600 TGTATAAATTTAAAATAAATGCGCTGTTT-AAACTTACCAGTAAAACAGGTGTTACTATGCATGAGGAAG---------------CAGCAGCAGGGAGGAGGGAGGCCGGAAGCTGGTGTGCATGGGAAGGGAATGTCTCATGGGA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       87271 131 +    463628 TGTGTAAATTTAAAATAAATGCGCTGTTTAAAACTTACCAGTAAAACAGGTGTTACCATGCATGAGGAAG---------------CAGCAGCAGGGAGGAGCGAGCCCCGAAGTTGGTGTGCATGGGAAGGGAATGTCTTATGGAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39665740 130 +  71996105 TGTATAAATTTAAAATAAATGCACTGTTT-AAACTTTCCAGTAAAACAGGTGTTACCATGCATGAGGAAG---------------CAGCAGCAGGGAGGAGGGAGGCCCGAAGCTGGTGGGCATGGGAAGGGAATGTCTCATGGGA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       88797 131 -    115496 TGTGTAAATTTAAAATAAATGCGCTGTTTAAAACTTACCAGTAAAACAGGTGTTACCATGCATGAGGAAG---------------CAGCAGCAGGGAGGAGCGAGCCCCGAAGTTGGTGTGCATGGGAAGGGAATGTCTCATGGAA
i manLeu1.NW_012101600v1   C 0 C 0
s saiBol1.JH378315            248151 127 +   1154217 TGCATAAATTTAAAATAAATTCACTGTTTTAAACTTACCAATAAAACAGGTGTTAC----CATGAGGAAG---------------CAGCAGCAGGGAGGAGGGAGCCCTGAGGCTGTTGTGCATGGGAAGGGAATGTCTCATAAGA
i saiBol1.JH378315         C 0 N 0
s cebCap1.NW_016107339v1    14065318 127 +  15232693 TTCATAAATTTAAAATAAATTCACTGTTTTAAACTTACCAATAAAACAGGTGCTAC----CATGAGGAAG---------------CAGCAGCAGGGAGGAGGGAGCCCCGAAGCCGTTGTGCATGGGAAGGGAATGTCTCATTAGC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      315027 126 +    446445 TGCATAAATTTAAAATAAATTCACTGTTTTAAACTTACCAATAAAGCAGGTGTTAC----CATGAGGAAG---------------CAGCAGCAGGGAGGAGGGA-CCCCGAGGCTGGTGTGCATGGAAAGGGAATGTCTCATTAGA
i aotNan1.NW_018508875v1   C 0 C 0
s canFam3.chr12             70454565 142 -  72498081 TACAGTAATTTAAAATACATGTGTCATTTAACATTTATAAATAAAATATGTGTTAC----CATGAAGAGGGAAAAATGCTTCTATAAAGAGTGGAGAAGAGAAAATCATGAAACTGGAGTGCATGGGAAGGAAATGCTTCATAGAA
i canFam3.chr12            I 372 C 0

a score=1680953.000000
s hg38.chr6_KI270758v1_alt     75698 245 +     76752 AGGGACTATACAGGTCTGTCTGGGGCCATGACAGG-GAGAGAAGTATAAAAATGAAGAATAAGGTACTCTTGTTTGGAAGAAATTGGAAAGCAGACAGAGAATTCCTCCTTAGGGAATAGCACAAAGAGAGGATCATTGATGGGCAAGAAATACTTCAGTAAGAGGATC-AGAATTCAAGTT----AATTCCACAACCAAATGTTGAAGCACTGTCATTTTTTT-TAAATGTGAAAAATATCAATGGTCACC
s panTro5.chr6             142778041 245 - 175400573 AGGGACTATACAGGTCTGTCTGGGGCCATGACAGG-GAGAGAAGTATAAAAATGAAGAATAAGGTACTCTTGTTTGGAAGAAATTGGAAAGCAGACAGAGAATTCCTCCTTAGGGAATAGCACAAAGAGAGGATCATTGATGGGCAAGAAATACTTCAGTAAGAGGATC-AGAATTCAAGTT----AATTCCACAACCAAATGTTGAAGCACTGTCATTTTTTT-TAAATGTGAAAAATATCAATGGTCACC
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140925636 245 - 173848474 AGGGACTATACAGGTCTGTCTGGGGCCATGACAGG-GAGAGAAGTATAAAAATGAAGAATAAGGTACTCTTGTTTGGAAGAAATTGGAAAGCAGACAGAGAATTCCTCCTTAGGGAATAGCACAAAGAGAGGCTCATTGATGGGCAAGAAATACTTCAGTAAGAGGATC-AGAATTCAAGTT----AATTCCACAACCAAATGTTGAAGCACTGTCATTTTTTT-TAAATGTGAAAAATATCAATGGTCACC
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2443453 245 +   2807050 AGGGACTATACAGGTCTGTCTGGGGCCATGACAGG-GAGAGAAGTATAAAAATGAAGAATAAGGTACTCTTGTTTGGAAGAAATTGGAAAGCAGACAGAGAATTCCTCCTTAGGGAATAGCACCAAGAGAGGATCATTGATGGGCAAGAAATACTTCAGTAAGAGGATC-AGAATTCAAGTT----AATTCCACAACCAAATGTTGAAGCACTGTCATTTTTTT-TTAATGTGAAAAATATCAACGGTCACC
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45762830 246 - 122973662 AGGGACTATACAGGTCTGTCTGGGGCCATGACAGG-GAGAGAAGTATAAAAATGAAGAATAAGGGACTCTTATTTGGAAGAAATTGGAAAGCAGACAGAGAATTCCTCCTTAGGGAATAGCACAAAGAGAGGATCATTGATGGGCAAGAAATACTTCAGTAAGAGGATC-AGAATTCAAGTT----AATTCCACAACCAAATGTTGAAGCACTGTCTTTTCTTTAAAAATGTGGAAAATGTCAATGGTCACC
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139341388 245 - 172585720 AGGGACTATACAGGTCTGTCTGGGGCCATGATAGG-GAAAGAAGTAT-AAAATGAAGAATAAGGGACTCTTGTTTGGAAGAAATTGGAAAGCAGACAGAGAATTCCTCCTTAGGGAATAGCACAAAGAGAGGATCATTGACGGGCAAGAAATACTTCATTAAGAGGATC-AGAATTCAAGTT----AATTCCACAACCAAATGCTGAAGCACTGTCATTTTTTAAAAAACGTAAAAAATATCAATGGTCACC
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138508659 246 + 170955103 AGGGACTATACAGGTCTGTCTAGGGCCATGACAGG-GAAAGAAGGATAAAAATGAAGAATAAGGGACTCTTGTTTGGAAGAAATTGGAAAGCAGACAGAGAATTCCTCCTTAGGGAATAGCACAAAGAGAGGATCATTGACGGGCAAGAAATACTTCAGTAAGAGGATC-AGAATTCAAGTT----AATTCCACAACCAAATGCTGAAGCACTGTCATTTTTTAAAAAACGTAAAAAATATCAATGGTCACC
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      215456 246 +    407600 AGGGACTATACAGGTCTGTCTAGGGCCATGACAGG-GAAAGAAGGATAAAAATGAAGAATAAGGGACTCTTGTTTGGAAGAAATTGGAAAGTAGACAGATAATTCCTCCTTAGAGAATAGCACAAAGAGAGGATCATTGACGGGCAAGAAATACTTCAGTAAGAGGATC-AGAATTCAAGTT----AATTCCACAACCAAATGCTGAAGCACTGTCATTTTTTAAAAAACGTAAAAAATATCAATGGTCACC
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       87402 246 +    463628 AGGGACTATGCAGGTCTGTCTGGGGCCATGACAGG-GAAAGAAGTATAAAAATGAAGAATAAGGGACTCTTGTTTGGAAGAAATTGGAAAGCAGACAGAGAATTCCTCCTTAGGGAATAGCACAAAGAGAGGATCTTTGATGGGCAAGAAATACTTCAGTAAGAGGATC-AGAATTCAAGTT----AATTCCACAACCAAATGCTGAAGCACTGTCATTTTTTTAAAAACATGAAAAATATCAATGGTCACC
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39665870 246 +  71996105 AGGGACTATACAGGTCTGTCTGGGGCCATGACAGG-GAAAGAAGTATAAAAATGAAGAATAAGGGACTCTTGTTTGGAAGAAATTGGAAAGCAGACAGAGAATTCCTCCTTAGGGAATAGCACAAAGAGAGGATCATTGACGGGCAAGAAATACTTCATTAAGAGGATC-AGAATTCAAGTT----AATTCCACAACCAAATGCTGAAGCACTGTCATTTTTTTAAAAATGTGAAAAATATCAATGGTCACC
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       88928 246 -    115496 AGGGACTATACAGGTCTGTCTGGGGCCATGACAGG-GAAAGAAGTATAAAAATGAAGAATAAGGGACTCTTGTTTGGAAGAAATTGGAAAGCAGACAGAGAATTCCTCCTTAGGGAATAGCACAAAGAGAGGATCTTTGATGGGCAAGAAATACTTCAGTAAGAGGATC-AAAATTCAAGTT----AATTCCACAACCAAATGCTGAAGCACTGTCATTTTTTTAAAAACATGAAAAATATCAATGGTCACC
i manLeu1.NW_012101600v1   C 0 C 0
s cebCap1.NW_016107339v1    14065445 241 +  15232693 AGGTATTATACAGGTCTGTCTGGGGCCATGACAGG-GAGAGAAGGATAAGAATGAAGAATAAGGGACTCTTGTTTGGAAGAAATTGGAAACCAGATAGATAATTCCTCCTTAGGGAACAGCACGAAGAGAGGATCATTGATGGGC-AAAAATACTTTATTAAGAGGGTC-AGAATTC--GTT-----ATTCCACAACCAAATGCTGAAGCACCATCATTTTTTT-TAAATATGAAAAATATCAATGGTCACC
i cebCap1.NW_016107339v1   C 0 C 0
s aotNan1.NW_018508875v1      315153 243 +    446445 AGGGATTATGCAGGTCTGTCTGGGGCCATGACAGG-GAGAGAAGGGTAAGAATGAAGAATAAGGGA-TCTCGTTTGGGAGAAATTGGAAACCAGATAGATAATTCCTCCTTAGGGAACGGCACAAAGAAAGGATCATTGATGGGCAAAAAATACTTTAGTAAGAGGATC-AGAATTCAAGTT-----ATTCCACAACCAAATGTTGAAGCACCGTCATTTTTTT-TTAATGTGAAAAATATCAATGGTCACC
i aotNan1.NW_018508875v1   C 0 I 76
s canFam3.chr12             70454707 213 -  72498081 AGAGCTAATAGTTTTCTGTCTGGGGAAATGACAGGAAAGAGAAGACTAAGGGTGAAGAATAAGGGCTACCTCTTTTGCAAGAATT------------GAGAATTCTCCCTT-GGTAAGGGCATAAA-------TCATTGGTGGGCAAGAAATATCCCCATAATGGAAACAAGAATTAAAGTTATCCAATCTCACAGCCACATGTTGAAGCATTG-----TTTTT-TAAGTGTGAAAAAT-------------
i canFam3.chr12            C 0 C 0

a score=25250.000000
s hg38.chr6_KI270758v1_alt     75943 5 +     76752 AATTG
s panTro5.chr6             142778286 5 - 175400573 AATTG
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140925881 5 - 173848474 AATTG
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2443698 5 +   2807050 AATTG
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45763076 5 - 122973662 AATTG
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139341633 5 - 172585720 AGTTG
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138508905 5 + 170955103 AGTGG
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      215702 5 +    407600 AGTGG
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       87648 5 +    463628 AGTTG
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39666116 5 +  71996105 AGTTG
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       89174 5 -    115496 AGTTG
i manLeu1.NW_012101600v1   C 0 C 0
s cebCap1.NW_016107339v1    14065686 5 +  15232693 AATTG
i cebCap1.NW_016107339v1   C 0 I 71
s canFam3.chr12             70454920 4 -  72498081 -ATTG
i canFam3.chr12            C 0 C 0
e aotNan1.NW_018508875v1      315396 76 +    446445 I

a score=52162.000000
s hg38.chr6_KI270758v1_alt     75948 12 +     76752 AGATCTTATAAA
s panTro5.chr6             142778291 12 - 175400573 AGATCTTATAAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140925886 12 - 173848474 AGATCTTATAAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2443703 12 +   2807050 AGATCTTATAAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45763081 12 - 122973662 AGACCTCATAAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139341638 12 - 172585720 AGACTTCATAAA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138508910 12 + 170955103 AGACTTCATAAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      215707 12 +    407600 AGACTTCATAAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       87653 12 +    463628 AGACTTCATAAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39666121 12 +  71996105 AGACTTCATAAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       89179 12 -    115496 AGACTTCATAAA
i manLeu1.NW_012101600v1   C 0 C 0
s canFam3.chr12             70454924 11 -  72498081 GAATCTCATAA-
i canFam3.chr12            C 0 C 0
e cebCap1.NW_016107339v1    14065691 71 +  15232693 I
e aotNan1.NW_018508875v1      315396 76 +    446445 I

a score=1284952.000000
s hg38.chr6_KI270758v1_alt     75960 187 +     76752 AACTGTGGAAGTCTAGGTCATCCAACTTACGTATTCAATATAAGAATTCTTTAACTTA---AAGTTGAAGTTGAATATCCATCTTAAGTTGAATATATTCAGAAATGTTCTTTCACAATGATAGGTA-CACCTGTGCCTTATCCAT---GTAGGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGGTTCCCTGAA
s panTro5.chr6             142778303 187 - 175400573 AACTGTGGAAGTCTAGGTCATCCAACTTACGTATTCAATATAAGAATTCTTTAACTTA---AAGTTGAAGTTGAATATCCATCTTAAGTTGAATATATTCAGAAATGTTCTTTCACAATGATAGGTA-CACCTGTGCCTTATCCAT---GTAGGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGGTTCCCTGAA
i panTro5.chr6             C 0 C 0
s panPan2.chr6             140925898 187 - 173848474 AACTGTGGAAGTCTAGGTCATCCAACTTACGTATTCAATATAAGAATTCTTTAACTTA---AAGTTGAAGTTGAATATCCATCTTAAGTTGAATATATTCAGAAATGTTCTTTCACAATGATAGGTA-CACCTGTGCCTTATCCAT---GTAGGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGGTTCCCTGAA
i panPan2.chr6             C 0 C 0
s gorGor5.CYUI01000036v1     2443715 187 +   2807050 AACTGTGGAAGTCTAGGTCATCCAACTTACGTATTCAATATAAGAATTCTTTAACTTA---AAGTTGAAGTTGAATATCCATCTTAAGTTGAATATATTCAGAAATGTTCTTTCACAATGATAGGTA-CACCTGTGCCTTATCCAT---GTAGGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGGTTCCCTGAA
i gorGor5.CYUI01000036v1   C 0 C 0
s nomLeu3.chr1a             45763093 187 - 122973662 AACTGTGGAAGTCTAGGTGATCCAATTTACGTATTCAATATAAGAACTCTTTAACTTA---AAGTTGAAGTTGAATATCCATCTTAAGTTGAATATATTCAGAAATGTTCTTTTACAATGATAGGTA-CACCTGTCCCCTATCCAT---GTAAGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGGTTCCCTGAA
i nomLeu3.chr1a            C 0 C 0
s rheMac8.chr4             139341650 181 - 172585720 AACTGTGGAAGTCTAGGTGATCCAACTTATGTATTCAATATAAGAATTCTTTAAC---------TTGAAGTTGAATATCCATCTTAAGTTGAATATATTCAGAAATGTTCTTTTACAGTGATAGGTA-CACCTGTCCCTTATCCAT---GTAGGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGATTCCCTGGA
i rheMac8.chr4             C 0 C 0
s macFas5.chr4             138508922 181 + 170955103 AACTATGGAAGTCTAGGTGATCCAACTTATGTATTCAATATAAGAATTCTTTAAC---------TTGAAGTTGAATATCCATCTTAAGTTGAATATATTCAGAAATGTTCTTTTACAGTGATAGGTA-CACCTGTCCCTTATCCAT---GTAGGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGATTCCCTGAA
i macFas5.chr4             C 0 C 0
s macNem1.NW_012013344v1      215719 181 +    407600 AACTATGGAAGTCTAGGTGATCCAACTTATGTATTCAATATAAGAATTCTTTAAC---------TTGAAGTTGAATATTCATCTTAAGTTGAATATATTCAGAAATGTTCTTTTACAGTGATAGGTA-CACCTGTCCCTTATCCAT---GTAGGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGATTCCCTGAA
i macNem1.NW_012013344v1   C 0 C 0
s cerAty1.NW_012003702v1       87665 181 +    463628 AACTGTGGAAGTCTAGGTGATCCAACTTATGTATTCAATATAAGAATTCTTTAAC---------TTGAAGTTGAATATCCATCTTAAGTTGAATATATTCAGAAATGTTCTTTTACAGTGATAGGTA-CACCTGTCCCTTATCCAT---GTAGGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGATTCCCTGAA
i cerAty1.NW_012003702v1   C 0 C 0
s chlSab2.chr17             39666133 181 +  71996105 AACTGTGGAAGTCTAAGTGATCCAACTTATGTATTCAATATAAGAATTCTTTAAC---------TTGAAGTTGAATATCCATCTTAAGTTGAATATATTCAAAAATATTCTTTTACAGTGATAGGTA-CACCTGTCCCTTATCCAT---GTAGGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGGTTCCCTGAA
i chlSab2.chr17            C 0 C 0
s manLeu1.NW_012101600v1       89191 181 -    115496 AACTGTGGAAGTCTAGGTGATCCAACTTATGTATTCAATATAAGAATTCTTTAAC---------TTGAAGTTGAATATCCATCTTAAGTTGAATATATTCAGAAATGTTCTTTTACAGTGATAGGTA-CACCTGTCCCTTATCCAT---GTAGGACTACAGAGCA-------GCTGCTGAGATCTGGAAAGGTTCCCTGAA
i manLeu1.NW_012101600v1   C 0 C 0
s cebCap1.NW_016107339v1    14065762 188 +  15232693 AACTGTGGAAGTCTAGGGGATCCAATTAATGTATTCAATATAAGAATTCTTTAAC---------TTGAAGTTGAATATCCATCTTAAGTTCAATACATTCAGAAGTGTCCTTTT-CAACGATAGGTATCACCTGTCCCTTATCCAT---GTAGGACTACAGAGCAGTCATGTACTGCTGAGATCTGGAAAGGTTCCTTGAA
i cebCap1.NW_016107339v1   I 71 C 0
s aotNan1.NW_018508875v1      315472 184 +    446445 AACTGTGGAAGTCTAGGTGATCCAACTAATGTATTCAATACAAGAATTCTTTAAC---------TTGAAGTTGAATATCCATCTTAAGTTCAATATATTCAGAAGTGTTCTTTT-CAATGATAGGTATCACCTGTCCCTTATCCAT---GTAGGACTACAGAGCGGTC----ACTGCTGAGATCTGGAACAGTTCCTTGAA
i aotNan1.NW_018508875v1   I 76 C 0
s canFam3.chr12             70454935 188 -  72498081 AACTACAG-AGCCTAGGTGATTC-----ATATATTAAATATGATAATTCTTTAACTTCTTTAAATTGAAGTTGAATACACAACTTAAGTTGAATACATTCAGCCGTATCCTTTTACAATGACAAGTATCATCTATGCCTTATGCACTTGGTAGAATTACATAGCA-------ACTGCTGACACTTGAAAAGGCTGCCTGGA
i canFam3.chr12            C 0 N 0

a score=3899070.000000
s hg38.chr6_KI270758v1_alt     76147 605 +     76752 TGTTTTGAGTTTGCAGACTG--AGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGCTCCAGGTTGCTGGATATATTTTCCAATCTATCTTATTGCACATTTATGATATAAGAAACATATTTTGCTTATGCAAAGGAGTGTCTGTAATAATCATTTTCAAGTAATGCAGGGAGCTAGACCTCTATTCATCTTATATAGGCCTCTTATATACAAGCACTTTTACAATGTTTGGAGTGCTAAGCCTTTCCTAGG-CCTGCATATTGAATTTAACACCCACATATATGTTTATTCCAGtgagaaagaaaagaaactttttatctgagtaatccaaaaatgatcaggcccagagagtcatgtaccatttcccccttgaggtaagta--accatctcttgaagctgctttctgtgtggacacttgactgactgccaccacaagtagctataaattaacctaacaatgccatacaatggacaccattactcatacctggtagttcaacaatgtgcagccaattactaatcaatgtcatttctgtaaaccaaagagaattcctgac----aattttgtcccagcccactccttgtcccctttttgcctttaaaacccagcttgt
s panTro5.chr6             142778490 605 - 175400573 TGTTTTGAGTTTGCAGACTG--AGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGCTCCAGGTTGCTGGATATATTTTCCAATCTATCTTATTGCGCATTTACGATATAAGAAACATATTTTGCTTATGCAAAGGAGTGTCTGTAATAATCATTTTCAAGTAATGCAGGGAGCTAGACCTGTATTCATCTTATATAGGCCTCTTATATATAAGCACTTTTACAATGTTTGGAGTGCTAAGCCTTTCCTAGG-CCTGCATATTGAATTTAACACCCACATATATGTTTATTCCAGtgagaaagaaaagaaactttttatctgagtaatccaaaaatgatcaggcccagagagtcatgtaccatttcccccttgagctaagta--accatctcttgaagctgcttgctgtgtggacacttgactgactgccaccacaagtagctataaattaacctaacagtgccatacaatggacaccattactcatacctggtagttcaacaatgtgcagccaattactaatcaatgtcatttctctaaaccaatgagaattcctgac----aattttgtcccagcccactccttgtcccctttttgcctttaaaaaccagcttgt
i panTro5.chr6             C 0 N 0
s panPan2.chr6             140926085 605 - 173848474 TGTTTTGAGTTTGCAGACTG--AGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGCTCCAGGTTGCTGGATATATTTTCCAATCTATCTTATTGCGCATTTATGATATAAGAAACATATTTTGCTTATGCAAAGGAGTGTCTGTAATAATCATTTTCAAGTAATGCAGGGAGCTAGACCTGTATTCATCTTATATAGGCCTCTTATATATAAGCACTTTTACAATGTTTGGAGTGCTAAGCCTTTCCTAGG-CCTGCATATTGAATTTAACACCCACATATATGTTTATTCCAGtgagaaagaaaagaaactttttatctgagtaatccaaaaatgatcaggcccagagagtcatgtaccatttcccccttgagctaagta--accatctcttgaagctgcttgctgtgtggacacttgactgactgccaccacaagtagctataaattaacctaacaatgccatacaatggacaccattactcatacctggtagttcaacaatgtgcagccaattactaatcaatgtcatttctctaaaccaatgagaattcctgac----aattttgtcccagcccactccttgtcccctttttgcctttaaaaaccagcttgt
i panPan2.chr6             C 0 N 0
s gorGor5.CYUI01000036v1     2443902 605 +   2807050 TGTTTTGAGTTTGCAGACTG--AGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGCTCCAGGTTGCTGGATATATTTTCCAATCTATCTTATTGCACATTTATGATATAAGAAACATATTTTGCTTATGCAAAGGAGTGTCTGTAATAATCATTTTCAAGTAATGCAGGGAGCTAGACCTGTATTCATCTTATATAGGCCTCTTATACACAAGCACTTTTACAATGTTTGGAGTGCTAAGCCTTTCCTAGG-CCTGCATATTGAATTTAACACCCACATATATGTTTATTCCAGtgagaaagaaaagaaactttttatctgagtaatccaaaaatgatcaggcccagagagtcatgtgccattttccccttgagctaagta--accatctcttgaagctgcttgctgtgtggacacttgactgactgccaccacaagtagctataaattaacctaacaatgccatacaatggacaccattactcatacctggtagttcaacaatgtgcagccaattactaatcaatgtcatttctgtaaaccaaagagaattcctgac----aattttgtcccagcccactccttgtcccctttttgcctttaaaacccagcttgt
i gorGor5.CYUI01000036v1   C 0 N 0
s nomLeu3.chr1a             45763280 605 - 122973662 CCTTTTGAGTTTGTAGACTC--AGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGCTCCAGGTTGCTGGATATATTTTCCAATCTATCTTAATGCACCTTTATGATTCAAGAAATATATTTTGCCTATGCAAAGGAATGTCTGTAATCATCATTTTCAAGTAATGCGGGGAGCTAGACCTGTATGCATCTTATATAGGCCTCTTATATACAAGCACTTTTACAATGTTTGGAGTGTTAAGCCTTTCCTAGG-TCTGCATATTGAATTTAACACCCACATACACGTTTATTCCAGtgagaaaggaaagaaactttttatctgagtaatccaaaaatgatcaggcccacagaatcatgtaccattttccccttgagctaagta--accatctcttgaagctgcttgctgtgtggacacttgactgactgccaccacaagtagctataaattaacctaacaatgccatacaatggacaccattactcatacctggtagttcaacaatgtgcagccaatcactaaccaatgttatttctgtaaaccaatgagaattcctggc----aattctgtcccagcccactcctcgtcccctttttgcctttaaaaaccagcttgt
i nomLeu3.chr1a            C 0 N 0
s rheMac8.chr4             139341831 605 - 172585720 CCTTTTGAGTTTGTAAACTC--AGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGCTCCAGGTTGCCGAATATATTTTCCAATCTATCTTATTGCACCTTTATGATTCAAGAAATATATTTTACCTATGCAAAGGAGTATCTGTAATAGTCATTTTCAAGTAATGCAGGCAGCTAGACCTGTATGCATCTTATATAGGCCTCTTATATACAAGCACTCTTACAATGTTTGGAGTGTTAAGCCTTTCCTAGG-TCTGCATATTGAATTTAACACCCACATATAAGTTTATTCCAGTGAGGaaaaaaagaaactttttatcagagtaatcaaaaaatgatcagggccagagagtcatgtaccatttcccccttgagctaagta--accatctcctgaagctgcttgctgtgtggacacttgactgactgctacgaaaagtagctatacattaacctaacaatgccatacaatggacaccattactcatacctggtagtttagcaatgtgcagccaatcactaataaatgttatttctgtaaaccaatgagaattcctaac----aattttgtcccagcccactccttatcccctttttgcctttaaaaaccagcttgt
i rheMac8.chr4             C 0 N 0
s macFas5.chr4             138509103 604 + 170955103 CCTTTTGAGTTTGTAAACTC--AGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGCTCCAGGTTGCTGAATATATTTTCCAATCTATCTTATTGCACCTTTATGATTCAAGAAATATATTTTACCTATGCAAAGGAGTATCTGTAATAGTCATTTTCAAGTAATGCAGGGAGCTAGACCTGTATGCATCTT-TATAGGCCTCTTATATACAAGCACTCTTACAATGTTTGGAGTGTTAAGCCTTTCCTAGG-TCTGCATATTGAATTTAACACCCACATATAAGTTTATTCCAGtgagaaaaaaaagaaactttttatcagagtaatcaaaaaatgatcagggccagagagtcatgtaccatttcccccttgagctaagta--accatctcctgaagctgcttgctgtgtggacacttgactgactgctacgaaaagtagctataaattaacctaacaatgccatacaatggacaccattactcacacctggtagttcagcaatgtgcagccaatcactaatcaatgttatttctgtaaaccaatgggaattcctaac----aattttgtcccagcccactccttatcccctttttgcctttaaaaatcagcttgt
i macFas5.chr4             C 0 N 0
s macNem1.NW_012013344v1      215900 604 +    407600 CCTTTTGAGTTTGTAAACTC--AGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGCTCCAGGTTGCCGAATATATTTTCCAATCTATCTTATTGCACCTTTATGATTCAAGAAATATATTTTACCTATGCAAAGGAGTATCTGTAATAGTCATTTTCAAGTAATGCGGGGAGCTAGACCTGTATGCATCTTATATAGGCCTCTTATATACAAGCACTCTTACAATGTTTGGAGTGTTAAGCCTTTCCTAGG-TCTGCATATTGAATTTAACACCTACATATAAGTTTATTCCAGtgagaaaaaaaagaaactttttatcagagtaatcaaaaaatgatcagggccagagagtcatgtaccatttcccctttgagctaagta--accatctcctgaagctgcttgctgtgtggacacttgactgactgctacgaaaagtagctataaattaacctaacaatgccatacaatggacaccattactcatacctggtagttcagcaatgtgcagccaatcactaatcaatgttatttctgtaaaccaacgagaattcctaac----aattttgtcccag-ccactccttatcccctttttgcctttaaaaaccagcttgt
i macNem1.NW_012013344v1   C 0 N 0
s cerAty1.NW_012003702v1       87846 605 +    463628 CCTTTTGAGTTTGTAAACTC--AGTCTTTTTAGTTAGAAAAGAGGCAAAGAAGCTCCAGGTTGCTGGATATATTTTCCAATCTATCTTATTGAACCTTTATGATTCAAGAAATATATTTTACCTATGGAAAGGAGTATCTGTAATAGTCATTTTCAAGTAATGCGGGGAGCTAGACCTGTATGCATCTTATATAGGCCTCTTATATACAAGCACTCTTACAATGTTTGGAGTGTTAAGCCTTTCCTAGG-TCTGCATATTGAATTTAACACCCACATATAAGTTTATTCCAGtgagaaaaaaaagaaactttttatcagagtaatcaaaaaatgatcagggcaagagagtcatgtaccatttcccccttgagctaagta--accgtctcctgaagctgcttgctgtgtggacacttgactgactgctatgaaaagtagctattcattaacctaacaatgccatacaatggacaccattactcacacctggtaattcagcaatgtgcagccaatcactcatcaatgttatttatgtaaaccaatgagaattcctgac----aattttgtcccagcccactccttatcccttttttgcctttaaaaaccagcttgt
i cerAty1.NW_012003702v1   C 0 N 0
s chlSab2.chr17             39666314 605 +  71996105 CCTTTTGAGTTTGTAAACTC--AGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGCTCCAGGTTGCTGGATATATTTTCCAATCTATCTTATTGCACCTTTATGATTCAAGAAATATATTTTACCTATGGAAAGGAGTATCTGTAATAGTCATTTTCAAGTAATGCGGGGAGCTAGACCTGTATGCATCTTATATAGGCCTCTTATATACAAGCACTCTTACAATGTTTGGAGTGTTAAGCCTTTCCTAGG-TCTGCATATTGAATTTAACACCCACATATAAGTTTATTCCAGTGAGGaaaaaaagaaactttttatcagagtaatcaaaaaatgatcagggccagagagtcatgtaccatttcccccttgagctaagta--accgtctcctgaagctgcttgctgtgtggacacttgactgactgctacgaaaagtagctatacattaacctaacaatgccatacaatggacaccattactcatacctggtagttcagcaatgtgcagccaatcactaatcaatgttatttatgtaaaccaacgagaattcctgaa----aattttgtcccagcccactccttatcccctttttgcctttaaaaaccagcttgt
i chlSab2.chr17            C 0 N 0
s manLeu1.NW_012101600v1       89372 605 -    115496 CCTTTTGAGTTTGTAAACTC--AGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGCTCCAGGTTGCTGAATATATTTTCCAATCTATCTTATTGCACCTTTATGATTCAAGAAATATATTTTACCTATGGAAAGGAGTATCTGTAATAGTCATTTTCAAGTAATGCGGGGAGCTAGACCTGTATGCATCTTATATAGGCCTCTTATATACAAGCACTCTTACAATGTTTGGAGTGTTAAGCCTTTCCTAGG-TCTGCATATTGAATTTAACACCCACATATAAGTTTATTCCAGtgagaaaaaaaagaaactttttatcagagtaatcaaaaaatgatcagggccagagagtcatgtaccatttcccccttgagctaagta--accgtctcctgaagctgcttgctgtgtggacacttgactgactgctatgaaaagtagctatacattaacctaacaatgccatacaatggacaccattactcacacctggtaattcagcaatgtgcagccaatcactcatcaatgttatttatgtaaaccaatgagaattcctgac----aattttgtcccagcccactccttatcccctttttgcctttaaaaaccagcttgt
i manLeu1.NW_012101600v1   C 0 N 0
s cebCap1.NW_016107339v1    14065950 609 +  15232693 TCTTTTGTGTGTGTAGACTCAAAGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGTTCCAGGTTGCTGTTTATATTTTTCAATCTATCTTATTGCATCTTTATGATTCAAGAAATATATCTT-CCTATGCATAAGAGTGTCTGTAATAATCATTTTTAAGTAACATGGGAAACTAGGCCTGTATACATCTTATATAGGCATCTTATATACAAGCACTTTTACAATGTTTGGAGTGCTAAACCTTTCCTAGGATCTGCGTATTGAATTTAACACCCACAT--ATGTTTATTCCAGtgagaaagaaaagaaactttttatctgagtaatgcaaaaatgatcaggcccagagagtcatgtaccagttccccgttgagctaaata--accatctcttgaagctgcttgctgtgtgaacacttgactgactgccaccacaaatagctataaattaacctaacaatgcgatacaatggacaccattactcatatctggttgctcaacagtgtgcagccaatcactaatcaatgttatttctgtaaaccaatgagaattcctgacaaacaattttgtaccagcccattccttgtcccctctttgcctttaaaaacctgcttgt
i cebCap1.NW_016107339v1   C 0 N 0
s aotNan1.NW_018508875v1      315656 606 +    446445 CCTTTTGTGTGTGTAG----AAAGTCTTTTTAGTTGGAAAAGAGGCAAAGAAGTTCCAGGTTGCTGTTTATATTTTCCAATCTATCTTATCGCATCTTTTTCATTCAAGAAATATATTTTGCCTATGCAAAAGAGTGTCTGTAATAATCATTTTTAAGTAACGTGGGAAACTAGACCTGTATACATCTTATATAGGCATCTTGTATACAAGCACTTTTACAACGTTTGGAGCGCTAAACCTTTCCTAGGTTCTGCCTATTGAATTTAACACCCACATACATGTTTATTCCAGTTAGAaagaaaagaaa--ttttatctgagtaacgcaaaaatgatcaggcct--agagtcatgtaccatttcccccttgagctaattaacaccgtctcttgaagctgcttgctgtgtgaacccttgactgactgccaccacagatagctataaattaacctaacaatgccatacaatggacactattactcatatctggttgctcaaaaatgtgcagccaatcactaatcaatgttatttctgtaaaccaatgagaattcctgacaaataattttgtaccagcccactccttgtcccctctttgcctttaaaaacctgcttgt
i aotNan1.NW_018508875v1   C 0 N 0

